Citrus Sinensis ID: 000194
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1880 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FR53 | 2481 | Serine/threonine-protein | yes | no | 0.994 | 0.753 | 0.814 | 0.0 | |
| Q0DJS1 | 2465 | Serine/threonine-protein | yes | no | 0.970 | 0.739 | 0.743 | 0.0 | |
| Q86C65 | 2380 | Target of rapamycin OS=Di | yes | no | 0.933 | 0.737 | 0.439 | 0.0 | |
| Q9Y7K2 | 2337 | Phosphatidylinositol 3-ki | yes | no | 0.930 | 0.748 | 0.377 | 0.0 | |
| O14356 | 2335 | Phosphatidylinositol 3-ki | no | no | 0.942 | 0.758 | 0.349 | 0.0 | |
| P32600 | 2474 | Serine/threonine-protein | yes | no | 0.936 | 0.711 | 0.350 | 0.0 | |
| P35169 | 2470 | Serine/threonine-protein | no | no | 0.941 | 0.716 | 0.337 | 0.0 | |
| Q9VK45 | 2470 | Target of rapamycin OS=Dr | yes | no | 0.932 | 0.710 | 0.336 | 0.0 | |
| Q9JLN9 | 2549 | Serine/threonine-protein | yes | no | 0.732 | 0.540 | 0.373 | 0.0 | |
| P42346 | 2549 | Serine/threonine-protein | yes | no | 0.732 | 0.540 | 0.373 | 0.0 |
| >sp|Q9FR53|TOR_ARATH Serine/threonine-protein kinase TOR OS=Arabidopsis thaliana GN=TOR PE=1 SV=1 | Back alignment and function desciption |
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Score = 3150 bits (8166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1551/1904 (81%), Positives = 1686/1904 (88%), Gaps = 34/1904 (1%)
Query: 1 MASTSQSLRYIGPPAPGAGGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGG 60
MAS SQS R+ GP A +GGGS D LNR++ADLC+ GNPKEGA LA RKH+EE RDL G
Sbjct: 16 MASPSQSHRFCGPSATASGGGSFDTLNRVIADLCSRGNPKEGAPLAFRKHVEEAVRDLSG 75
Query: 61 EAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120
EA SRFM+QLYDRI+ L+ES D AEN+GALRAIDEL ++ GENA+KVS+F+ YMRTVFE
Sbjct: 76 EASSRFMEQLYDRIANLIESTDVAENMGALRAIDELTEIGFGENATKVSRFAGYMRTVFE 135
Query: 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180
+KRD EILVLAS+VLGHLARAGGAMT+DEVEFQ+K A DWLR DRVEYRRFAAVLILKEM
Sbjct: 136 LKRDPEILVLASRVLGHLARAGGAMTSDEVEFQMKTAFDWLRVDRVEYRRFAAVLILKEM 195
Query: 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240
AENASTVFNVHV EFVDAIWVALRDP L VRERAVEALRACLRVIEKRETRWRVQWYYRM
Sbjct: 196 AENASTVFNVHVPEFVDAIWVALRDPQLQVRERAVEALRACLRVIEKRETRWRVQWYYRM 255
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS
Sbjct: 256 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 315
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYL 360
ITSLLPRIAHFLRDRFVTNYL ICMNHILTVLRIPAER SGFIALGEMAGALDGEL HYL
Sbjct: 316 ITSLLPRIAHFLRDRFVTNYLTICMNHILTVLRIPAERASGFIALGEMAGALDGELIHYL 375
Query: 361 PTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA 420
PTI SHLR+AIAPR+G+P LEA+ACVGNIA+AMG +E HVR LLD+MFS+ LS+TLVDA
Sbjct: 376 PTIMSHLRDAIAPRKGRPLLEAVACVGNIAKAMGSTVETHVRDLLDVMFSSSLSSTLVDA 435
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480
L+QIT+SIPSLLPT+QDRLLDCIS VLSKSHYSQA+P T +RG+ + + Q SD + SA
Sbjct: 436 LDQITISIPSLLPTVQDRLLDCISLVLSKSHYSQAKPPVTIVRGSTVGMAPQSSDPSCSA 495
Query: 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFT 540
VQLALQTLARFNFKGHDLLEFAR+SVV+YLDDED ATRKDAALCCC+L+ANS SG+ T
Sbjct: 496 QVQLALQTLARFNFKGHDLLEFARESVVVYLDDEDAATRKDAALCCCRLIANSLSGI--T 553
Query: 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADC 600
QFG+SRS R GG+RRRL+EE+VEKLL AVADADVTVR SIF +L+GN+ FDD+LAQAD
Sbjct: 554 QFGSSRSTRAGGRRRRLVEEIVEKLLRTAVADADVTVRKSIFVALFGNQCFDDYLAQADS 613
Query: 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE 660
L+AIFA+LNDED DVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLE SADNKCRE
Sbjct: 614 LTAIFASLNDEDLDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEL-SADNKCRE 672
Query: 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
ESAKLLGCL+RNCERLI PY+AP+ KALVARL EGTG+NANN I++GVLVTVGDLARVGG
Sbjct: 673 ESAKLLGCLVRNCERLILPYVAPVQKALVARLSEGTGVNANNNIVTGVLVTVGDLARVGG 732
Query: 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780
MRQYI ELMPLIVEAL+DGAAV KREVAVSTLGQVVQSTGYV+TPY EYP LLGLLLK
Sbjct: 733 LAMRQYIPELMPLIVEALMDGAAVAKREVAVSTLGQVVQSTGYVVTPYKEYPLLLGLLLK 792
Query: 781 MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ-LSGSHGEVTRAASDSGQHIQPMDEF 839
+L G+LVWSTRREVLKVLGIMGALDPH HKRNQQ LSGSHGEV R DSGQ I +DE
Sbjct: 793 LLKGDLVWSTRREVLKVLGIMGALDPHVHKRNQQSLSGSHGEVPRGTGDSGQPIPSIDEL 852
Query: 840 PMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPK 899
P++L PSFATSEDYYSTVAINSLMRILRD SL SYH++VV SLM IFKSMGLGCVPYLPK
Sbjct: 853 PVELRPSFATSEDYYSTVAINSLMRILRDASLLSYHKRVVRSLMIIFKSMGLGCVPYLPK 912
Query: 900 VLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR 959
VLP+LFHTVRT D+ LKD+ITW LGTLVSIVRQHIRKYL EL SL+SELWSSF+LP R
Sbjct: 913 VLPELFHTVRTSDENLKDFITWGLGTLVSIVRQHIRKYLPELLSLVSELWSSFTLPGPIR 972
Query: 960 TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG 1019
RGLPVLHL++ LCLALNDEFRT+LPVILPC IQVL DAER NDYTYV DILHTLEVFG
Sbjct: 973 PSRGLPVLHLLEHLCLALNDEFRTYLPVILPCFIQVLGDAERFNDYTYVPDILHTLEVFG 1032
Query: 1020 GTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
GTLDEHMHLLLPALIRLFKVDAPV IRR AI+TLTR+IP VQVTGHIS+LVHHLKLVLDG
Sbjct: 1033 GTLDEHMHLLLPALIRLFKVDAPVAIRRDAIKTLTRVIPCVQVTGHISALVHHLKLVLDG 1092
Query: 1080 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL 1139
KNDELRKDAVDALCCLAHALGEDFTIFI SIHKLLLKHRLRHKEFEEI R RRREPLI+
Sbjct: 1093 KNDELRKDAVDALCCLAHALGEDFTIFIESIHKLLLKHRLRHKEFEEIHARWRRREPLIV 1152
Query: 1140 GSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLR------GHQASQRSTKEDWA 1193
+TA QQLSRR+PVEVI DP+ + + DP+E+GTD Q+ +ASQRSTKEDW
Sbjct: 1153 ATTATQQLSRRLPVEVIRDPVIENEIDPFEEGTDRNHQVNDGRLRTAGEASQRSTKEDWE 1212
Query: 1194 EWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSL 1253
EWMRH SIELLKESPSPALRTCA+LAQLQPFVGRELFAAGFVSCW+QLN +SQK LV+SL
Sbjct: 1213 EWMRHFSIELLKESPSPALRTCAKLAQLQPFVGRELFAAGFVSCWAQLNESSQKQLVRSL 1272
Query: 1254 EMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFE 1313
EMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCR FAKALHYKEMEFE
Sbjct: 1273 EMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRVFAKALHYKEMEFE 1332
Query: 1314 GARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDA 1373
G RS RMDANPVAVVEALIHINNQLHQHEAAVGILTYAQ+ LDVQLKESWYEKLQRWDDA
Sbjct: 1333 GPRSKRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQQHLDVQLKESWYEKLQRWDDA 1392
Query: 1374 LKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMA 1433
LKAYT KASQ +NPH+VLEATLG+MRCLAALARWEELNNLCKEYW+PAEP+ARLEMAPMA
Sbjct: 1393 LKAYTLKASQTTNPHLVLEATLGQMRCLAALARWEELNNLCKEYWSPAEPSARLEMAPMA 1452
Query: 1434 ANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK--- 1490
A AAWNMGEWDQMAEYVSRLDDGDE+KLRGL + ++GDGSSNGTFFRAVLLVRR K
Sbjct: 1453 AQAAWNMGEWDQMAEYVSRLDDGDETKLRGLASPVSSGDGSSNGTFFRAVLLVRRAKYDE 1512
Query: 1491 -------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRR 1531
VLESYERAYSNMVRVQQLSELEEVI+Y TLPVGN +AE RR
Sbjct: 1513 AREYVERARKCLATELAALVLESYERAYSNMVRVQQLSELEEVIEYYTLPVGNTIAEERR 1572
Query: 1532 AIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARST 1591
A+IRNMWT+RIQG+KRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQA+ST
Sbjct: 1573 ALIRNMWTQRIQGSKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQAKST 1632
Query: 1592 LVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPV 1651
L+KLL +DPE S EN++YHGPPQVM YLKYQWSLGE+ KRKEAF +LQ L ELSS P
Sbjct: 1633 LLKLLPFDPEVSPENMQYHGPPQVMLGYLKYQWSLGEERKRKEAFTKLQILTRELSSVPH 1692
Query: 1652 IQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711
QS S+ ++ NVPL+ARV LKLG+W+ AL GL+D SI EI A+ +T A KW
Sbjct: 1693 SQSDILASMVSSKGANVPLLARVNLKLGTWQWALSSGLNDGSIQEIRDAFDKSTCYAPKW 1752
Query: 1712 GKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILR 1771
KAWH+WALFNTAVMSHY RG +A Q+VV AVTGYF+SIACAA+AKGVDDSLQDILR
Sbjct: 1753 AKAWHTWALFNTAVMSHYISRG--QIASQYVVSAVTGYFYSIACAANAKGVDDSLQDILR 1810
Query: 1772 LLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIG 1831
LLTLWFNHGAT +VQ AL+ GF+HVNINTWLVVLPQIIARIHSNNRAVRELIQSLL+RIG
Sbjct: 1811 LLTLWFNHGATADVQTALKTGFSHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLIRIG 1870
Query: 1832 QSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGVLVDQS 1875
++HPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSG LVDQ+
Sbjct: 1871 ENHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGALVDQA 1914
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Essential cell growth regulator that controls development from early embryo to seed production. Controls plant growth in environmental stress conditions. Acts through the phosphorylation of downstream effectors that are recruited by the binding partner RAPTOR. Acts by activating transcription, protein synthesis and ribosome biogenesis, and inhibiting mRNA degradation and autophagy. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|Q0DJS1|TOR_ORYSJ Serine/threonine-protein kinase TOR OS=Oryza sativa subsp. japonica GN=TOR PE=2 SV=3 | Back alignment and function description |
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Score = 2753 bits (7137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1392/1871 (74%), Positives = 1567/1871 (83%), Gaps = 47/1871 (2%)
Query: 46 ALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENA 105
ALRKH+EE+ARDL GEAF RFM+QLY++I LL+SND AENL ALRAID LID+ GE A
Sbjct: 40 ALRKHVEEEARDLSGEAFLRFMEQLYEQICSLLQSNDVAENLLALRAIDALIDMPFGEGA 99
Query: 106 SKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDR 165
SKVSKF+N++RTVFEVKRD E+LV AS VLGHLA+AGGAMTADEVE Q+K AL WL GDR
Sbjct: 100 SKVSKFANFLRTVFEVKRDPEVLVPASAVLGHLAKAGGAMTADEVERQIKTALGWLGGDR 159
Query: 166 VEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVI 225
VEYRRFA+VLILKEMAENASTVFNVHV EFVDAIWVALRDP AVRERAVEALRACL VI
Sbjct: 160 VEYRRFASVLILKEMAENASTVFNVHVPEFVDAIWVALRDPKQAVRERAVEALRACLHVI 219
Query: 226 EKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEI 285
EKRETRWRVQWYYRM EA Q GLG+NA VHSIHGSLLAVGELLRNTGEFMMSRYREVA+I
Sbjct: 220 EKRETRWRVQWYYRMCEAAQVGLGKNASVHSIHGSLLAVGELLRNTGEFMMSRYREVADI 279
Query: 286 VLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIAL 345
VL YL HRD+LVR SITSLLPRIAHFLRDRFVTNYLKICM+HIL VLR P ER SGF+AL
Sbjct: 280 VLNYLRHRDQLVRRSITSLLPRIAHFLRDRFVTNYLKICMDHILFVLRTPDERASGFVAL 339
Query: 346 GEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVR-GL 404
GEMAGAL EL YLP ITSHL +AIAPRRG+PSLEA++CVG+ A+AMGP MEPH+R GL
Sbjct: 340 GEMAGALGAELVPYLPLITSHLHDAIAPRRGRPSLEAISCVGSFAKAMGPAMEPHIRGGL 399
Query: 405 LDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRG 464
LD MFSAGLS LV+ALE I+ SIPSLLPTIQ+RLLDCIS L K S RP A RG
Sbjct: 400 LDAMFSAGLSDKLVEALESISTSIPSLLPTIQERLLDCISQALPK---SSVRPGAAVGRG 456
Query: 465 NVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAAL 524
+ + QQ D G VQLAL TLA FNFKGH+LLEFAR+SV+LYL+DED +TRK AA
Sbjct: 457 SRSSSLQQFVDSGGPVLVQLALGTLANFNFKGHELLEFARESVILYLEDEDCSTRKAAAT 516
Query: 525 CCCKLVANSFSGVSFTQFGASRSNRTGG-KRRRLIEELVEKLLIAAVADADVTVRHSIFS 583
CCCKLVA+S S S +QF ++R NR GG KRRRL+EE+VEKLL+AAVADADV VR S+F
Sbjct: 517 CCCKLVAHSLSASSSSQFSSNRPNRMGGAKRRRLVEEIVEKLLMAAVADADVGVRSSVFK 576
Query: 584 SLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLI 643
+LY N FDDFLAQAD +++IF ALNDE++ VRE AISVAGRLSEKNPAYVLPALRR+LI
Sbjct: 577 ALYRNPSFDDFLAQADIMTSIFVALNDEEYHVRELAISVAGRLSEKNPAYVLPALRRYLI 636
Query: 644 QLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNG 703
QLLTYL+Q S D+KCREESA+LLGCLIR+C RLI PYIAPIHKALVARL EGTG NANN
Sbjct: 637 QLLTYLDQ-SMDSKCREESARLLGCLIRSCARLILPYIAPIHKALVARLREGTGPNANNA 695
Query: 704 IISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGY 763
+ +GVL TVG+LA+VGGF MRQY+ ELMPL+V+ALLDG AV+KREVAV+TLGQV+QSTGY
Sbjct: 696 LAAGVLATVGELAKVGGFAMRQYLPELMPLVVDALLDGGAVSKREVAVATLGQVIQSTGY 755
Query: 764 VITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQ-QLSGSHGEV 822
VI+PYNEYP LLGLLLK+LNGEL WSTR EVLKVLGIMGALDPHAHKRNQ +L G H EV
Sbjct: 756 VISPYNEYPPLLGLLLKLLNGELEWSTRLEVLKVLGIMGALDPHAHKRNQHKLPGQHREV 815
Query: 823 TRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSL 882
R ++ QHI M+E P D WPSF+ SEDYYSTVAI+SLMRIL DPSL+SYHQ VVGSL
Sbjct: 816 LRPTMETAQHIVSMEELPTDFWPSFSASEDYYSTVAISSLMRILHDPSLSSYHQMVVGSL 875
Query: 883 MFIFKSMGLGCVPYLPKVLPDLFHTVRTCDD-YLKDYITWKLGTLVSIVRQHIRKYLQEL 941
+FIFKSMGLGCVPYLPKVLP+LF VR C+D LK++ITWKLGTLVSIVRQHIRKYLQE+
Sbjct: 876 IFIFKSMGLGCVPYLPKVLPELFRAVRMCEDGGLKEFITWKLGTLVSIVRQHIRKYLQEI 935
Query: 942 FSLISELW-SSFSLPATNRTYRG---LPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLS 997
SL+SELW SSFSLPA NRT +G PVLHLV+QLCLALNDEFR ++ ILP CIQVL
Sbjct: 936 LSLVSELWTSSFSLPAPNRTVQGPQASPVLHLVEQLCLALNDEFRMYILHILPSCIQVLG 995
Query: 998 DAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLI 1057
DAERCNDY YV DILHTLEVFGG LDEHMHL+ P L+RLFKV+ VDIRR AI TLT+LI
Sbjct: 996 DAERCNDYYYVPDILHTLEVFGGNLDEHMHLVAPVLVRLFKVEL-VDIRRRAIVTLTKLI 1054
Query: 1058 PRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKH 1117
P VQV H+S LVHHLKLVLDG ND+LRKDA +ALCCLAHALGEDFTIF+ SIHKLL+KH
Sbjct: 1055 PTVQVGTHVSVLVHHLKLVLDGNNDDLRKDAAEALCCLAHALGEDFTIFVSSIHKLLVKH 1114
Query: 1118 RLRHKEFEEIEGRLRRREPLILGSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQ 1177
+R+++++EIE RL RREPLI + + Q+ + + P EVISDPL+D P E+ + Q+Q
Sbjct: 1115 HMRYRKWDEIENRLLRREPLISENLSVQKYT-QCPPEVISDPLDDFGGVPSEEADETQRQ 1173
Query: 1178 LRGHQ-----------ASQRSTKEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVG 1226
R HQ ASQRST+EDWAEWMRH SI LLKESPSPALRTCARLAQLQP VG
Sbjct: 1174 PRSHQVNDVRLRSAGEASQRSTREDWAEWMRHFSIALLKESPSPALRTCARLAQLQPSVG 1233
Query: 1227 RELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPI 1286
RELFAAGF SCW+Q+N TSQ+ LV+SL+ AFSS NIPPEILATLLNLAEFMEHDEKPLPI
Sbjct: 1234 RELFAAGFASCWAQMNETSQEQLVRSLKTAFSSQNIPPEILATLLNLAEFMEHDEKPLPI 1293
Query: 1287 DIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVG 1346
D RLLGALAEKCRAFAKALHYKEMEFE S +M ANPV VVE+LIHINNQLHQHEAA+G
Sbjct: 1294 DTRLLGALAEKCRAFAKALHYKEMEFEAVCSKKMGANPVTVVESLIHINNQLHQHEAAIG 1353
Query: 1347 ILTYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALAR 1406
ILTY+Q+ L+VQLKESWYEKL RWD+ALKAY K+SQAS P L+ATLGRMRCLAALAR
Sbjct: 1354 ILTYSQQHLEVQLKESWYEKLHRWDEALKAYKAKSSQASGPLQNLDATLGRMRCLAALAR 1413
Query: 1407 WEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGN 1466
WE+L+ LC+E WT +EP+ARLEMAPMAANAAW+MGEWD MAEYVSRLDDGDE+KLR LGN
Sbjct: 1414 WEDLSALCREQWTGSEPSARLEMAPMAANAAWHMGEWDHMAEYVSRLDDGDENKLRILGN 1473
Query: 1467 TAANGDGSSNGTFFRAVLLVRRGK----------------------VLESYERAYSNMVR 1504
T A+GDGSSNG FFRAVL VR K VLESYERAY+NMVR
Sbjct: 1474 TTASGDGSSNGAFFRAVLSVRCKKYEEARVYVERARRCLATELAALVLESYERAYNNMVR 1533
Query: 1505 VQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLP 1564
VQQLSELEEVIDYCTLP+ +P+A+ RR +IRNMW ERI+GTKRNVEVWQALLAVR LVLP
Sbjct: 1534 VQQLSELEEVIDYCTLPMESPIADSRRELIRNMWNERIKGTKRNVEVWQALLAVRELVLP 1593
Query: 1565 PTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQW 1624
P ED +TW+KFA LC KSGRISQA+STLVKLLQ+DPE+S E YHG PQV+ AYLKYQ+
Sbjct: 1594 PNEDRDTWIKFAKLCWKSGRISQAKSTLVKLLQFDPESSPELTLYHGHPQVVLAYLKYQY 1653
Query: 1625 SLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRA 1684
++G++LKR++AF RLQ L+++L++ S S ++ VPLIARVYL L SWKRA
Sbjct: 1654 AVGDELKRRDAFCRLQDLSVQLATATNSYSGTLASQVATSNAGVPLIARVYLTLASWKRA 1713
Query: 1685 LPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVH 1744
L PGLDD+SI EI+ +Y+NAT A WGKAWH WALFNT VMS YTLRG P +A ++VV
Sbjct: 1714 LSPGLDDDSIQEILVSYKNATLNAKDWGKAWHLWALFNTEVMSRYTLRGRPDIAGKYVVA 1773
Query: 1745 AVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVV 1804
AVTGYF+SIACA+ KGVDDSLQDILRLLTLWFNHGAT EVQ+ALQKGF+ VNI WLVV
Sbjct: 1774 AVTGYFYSIACASTTKGVDDSLQDILRLLTLWFNHGATSEVQMALQKGFSLVNIEMWLVV 1833
Query: 1805 LPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKV 1864
LPQIIARIHSNN+ VRELIQSLLVRIG+ HPQALMYPLLVACKSIS LR+ AAQEVVDK+
Sbjct: 1834 LPQIIARIHSNNKIVRELIQSLLVRIGKDHPQALMYPLLVACKSISILRQRAAQEVVDKI 1893
Query: 1865 RQHSGVLVDQS 1875
RQHSG LVDQ+
Sbjct: 1894 RQHSGGLVDQA 1904
|
Essential cell growth regulator that controls plant development. Acts through the phosphorylation of downstream effectors that are recruited by the binding partner RAPTOR. Acts by activating transcription, protein synthesis and ribosome biogenesis, and inhibiting mRNA degradation and autophagy. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q86C65|TOR_DICDI Target of rapamycin OS=Dictyostelium discoideum GN=tor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1506 bits (3899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 836/1903 (43%), Positives = 1195/1903 (62%), Gaps = 148/1903 (7%)
Query: 24 DALNRILADLCTHGNP-KEGASLALRKHIEEQARDLGGEAFSRFMDQLYDR-ISGLLESN 81
DAL ++L DL + + AS L+ ++ Q+R++ E F++FM++L + I L+ S+
Sbjct: 12 DALTKLLNDLKSKKEEDRVKASKNLKSYVISQSREMTNENFTKFMNELNNNLIFELVNSS 71
Query: 82 DAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA 141
E +G + AIDELIDV ENA+K+++ +NY+R D ++++ASK LG LAR+
Sbjct: 72 VIPEKIGGIMAIDELIDVDYDENATKITRLANYLRIGLGFN-DFTVMLMASKALGRLARS 130
Query: 142 GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWV 201
G +TA+ VEF+V AL+WL GDR+E RR AAVL+LKE+A+NA T+F VH + FVD IWV
Sbjct: 131 SGTLTAEFVEFEVTRALEWLSGDRIEARRHAAVLVLKELAQNAPTLFYVHASSFVDLIWV 190
Query: 202 ALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSL 261
AL+DP +A+RE AVEALRACL +I +RE+R R+QWY ++++ Q +N SIHGSL
Sbjct: 191 ALKDPKVAIREGAVEALRACLELISERESRLRLQWYQKIYDEAQKSFKQNGSPESIHGSL 250
Query: 262 LAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL 321
+ V ELLRNTG+FM+S+++++ E VL+Y +HRD+LV+ ++ +L PR+A F FV NY
Sbjct: 251 ITVSELLRNTGDFMLSKFKDICETVLKYKDHRDKLVKKTVLALFPRLAVFCSRDFVLNYF 310
Query: 322 KICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLE 381
CMNH+L LR ER + FIALGE+A A+ G + YL +I +++ + + + E
Sbjct: 311 NACMNHLLAALRNQNERPTAFIALGEIAMAVGGSIKPYLDSIVVMIKQGLMTKGKQFCPE 370
Query: 382 ALACVGNIARAMGPVMEPHVRGLL-DIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLL 440
L C+ +A A+G M PH++ +L ++ S+GL+ L DAL +T+++P+L+P IQ +LL
Sbjct: 371 VLTCISMLASAVGQSMYPHMQVILPQMIVSSGLTVVLTDALRDLTINLPTLIPNIQYKLL 430
Query: 441 DCISFVLSKSHYSQA------RPAATPIRGNVMNIPQ--QVSDLNGSAPVQLALQTLARF 492
+ IS VL+ +S+ R +ATP +G +IPQ Q SD++ + LAL+TL F
Sbjct: 431 NLISQVLANKPFSEPGAPSPYRKSATPFQGG--SIPQLGQNSDVDPQM-IALALKTLGSF 487
Query: 493 NFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGG 552
+F H+LLEF R+ VV YLDD++ R++AA+ C +L+ G T G
Sbjct: 488 DFSKHNLLEFVRECVVNYLDDDNIEIRREAAITCAQLMV-----------GTEEPTPTRG 536
Query: 553 KRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDED 612
++ E++EKLL+ +AD D ++R ++ SSL FD +LAQA+ L ++F ALNDE
Sbjct: 537 HSAVIVGEVLEKLLVVGIADPDPSIRKTVLSSLEAR--FDHYLAQAENLRSLFIALNDEL 594
Query: 613 FDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRN 672
F++RE AI+V GRL+ +NPAYV+P+LR+ LIQLLT LE S D + +EESA+LLG LI
Sbjct: 595 FEIRELAITVIGRLTIRNPAYVMPSLRKTLIQLLTELE-FSGDGRNKEESARLLGHLISA 653
Query: 673 CERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMP 732
E+LI+PY+ PI KAL+ +L + +N + S VL +G+L+ VGG M Q+I L+P
Sbjct: 654 SEKLIKPYVEPILKALLPKLRD-----SNPRVASCVLAALGELSVVGGEEMVQHIDSLLP 708
Query: 733 LIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRR 792
LI++ L D ++ +KREVA+ TL Q+ STGYVI P+++YP LL LL + E + S RR
Sbjct: 709 LIIDTLQDQSSTSKREVALKTLAQLASSTGYVIKPFSKYPMLLDTLLNAIKTERIGSIRR 768
Query: 793 EVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSED 852
EV+KVLGI+G+LDP+ HK N+ G E +A D + M + + PS +ED
Sbjct: 769 EVIKVLGILGSLDPYKHKMNEL--GKRREDPKANDDKNNN---MTNEVITISPS---NED 820
Query: 853 YYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCD 912
YY TVA+ +LM+ILRDPSL+S+H V+ ++M+IFKS+ L +P+LP+++P H + T +
Sbjct: 821 YYPTVALTALMKILRDPSLSSHHTSVIQAVMYIFKSLSLKSIPFLPQIMPPFLHAMNTGE 880
Query: 913 DYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQ 972
++++ +LG+LVSIV+QHIR YL +F+LI + W+S L +P++ LV++
Sbjct: 881 PLFREFLFQQLGSLVSIVKQHIRDYLVNVFALIEKYWNSNLL---------IPIIKLVEE 931
Query: 973 LCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPA 1032
+ ALNDEF+ +LP ++P + VL +R + +L LEVFG LD+++HL++PA
Sbjct: 932 ISSALNDEFKVYLPNLIPQMLNVLH-TDRSPKRSPTTKVLRALEVFGTNLDDYLHLVIPA 990
Query: 1033 LIRLF-KVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDA 1091
+++LF +VD +R AI+T+ RL ++ + + S ++H L VLD ELR++ ++
Sbjct: 991 IVKLFEQVDVTTQVRTLAIQTIGRLCKKLNFSDYASRIIHPLARVLDSTESELREETLNT 1050
Query: 1092 LCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL-------GSTAA 1144
LC L + LG D+ IFIP + K+L + ++ +E + +L + + L+L G A
Sbjct: 1051 LCALVYQLGSDYAIFIPMVGKVLARREIQSTNYELLISKLLKNQQLMLTPGSGDDGGMGA 1110
Query: 1145 QQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGH-----QASQRSTKEDWAEWMRHL 1199
+ + + N+ S P + G K H + SQRSTKEDW EW+R
Sbjct: 1111 NRFGGDHNGHHLGEDHNNT-STPLDIGVKKLKANEQHLKNAWETSQRSTKEDWGEWIRRF 1169
Query: 1200 SIELLKESPSPALRTCARLAQ-LQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFS 1258
S+ELL+ESPSPALR+C LAQ P V +ELF AGFVSCW++L+ Q+ LV+SLE A
Sbjct: 1170 SVELLRESPSPALRSCLSLAQDYHPLV-KELFNAGFVSCWTELHEQFQEELVRSLETALL 1228
Query: 1259 SPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSN 1318
SPNIPPEIL TLLNLAEFME EKPLPIDIR LGALAEKC A+AKALHYKE EF +
Sbjct: 1229 SPNIPPEILQTLLNLAEFMELHEKPLPIDIRTLGALAEKCHAYAKALHYKESEFSQS--- 1285
Query: 1319 RMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYT 1378
P + +EALI INNQL Q EAA+GIL YAQK V+LKE WYEKL+RW+DAL AY
Sbjct: 1286 -----PSSTIEALISINNQLQQPEAAIGILIYAQKNHSVELKEGWYEKLRRWEDALAAYE 1340
Query: 1379 NKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW-TPAEPAARLEMAPMAANAA 1437
K N + E T+G +RCL AL WE L+ L E W + R +AP+AA AA
Sbjct: 1341 KKQKDDPNGGTI-ENTMGILRCLHALGEWERLSALSSETWKSDINDHTRATIAPLAAAAA 1399
Query: 1438 WNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVL----- 1492
WN+ WD+M EYV A N D + G+F+RA+L V
Sbjct: 1400 WNLVNWDKMDEYV----------------CAMNKD-TVEGSFYRAILEVHHDNFTLAHGF 1442
Query: 1493 -----------------ESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIR 1535
ESY RAY +VR+QQLSELEE+I+Y V +P RR +I+
Sbjct: 1443 IDHARTLVDTELTALLGESYNRAYKVVVRLQQLSELEEIIEYKKC-VDSP---ERRNMIK 1498
Query: 1536 NMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKL 1595
N W R++G + NV++WQ++LAV +LV+ P E+++ WLKF LCRK R+ A+ TL L
Sbjct: 1499 NTWKTRLRGCQHNVDIWQSILAVHSLVISPHEELDMWLKFVGLCRKGSRLGLAQKTLTML 1558
Query: 1596 LQYDPETSHE--NVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQ 1653
+ DP T+ + +V + P++ +AY+K WS G ++ AF +L+T L
Sbjct: 1559 MGKDPSTTSQFGSVLPNTHPRITFAYIKQLWSAG---AKQPAFEKLRTFVQALRD----- 1610
Query: 1654 SAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGK 1713
+ ++PL R YLKLG W+ AL L + SIP II++++ AT+C W K
Sbjct: 1611 -----------TDDLPLQGRAYLKLGEWQLALGDTLSEASIPHIISSFKAATECDPNWYK 1659
Query: 1714 AWHSWALFNTAVMSHYTLR-GLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRL 1772
AWHSWAL N V+SHY G P ++ AV +F SI+ G D SLQD LRL
Sbjct: 1660 AWHSWALINFEVVSHYEQNGGTPEQIGAHLLPAVHSFFKSISL-----GPDRSLQDTLRL 1714
Query: 1773 LTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQ 1832
LTLWF HGA +EV+ AL +GF ++I+TWL V+PQIIARIH+ VR L+ L+ IG+
Sbjct: 1715 LTLWFKHGAQKEVEAALMQGFNTISIDTWLHVIPQIIARIHAPVLPVRRLLHELIDTIGK 1774
Query: 1833 SHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGVLVDQS 1875
HPQAL+YPL VA KS S R AAA+ ++DK+R+HS LVDQ+
Sbjct: 1775 EHPQALVYPLTVATKSHSPARLAAAKSLMDKMRKHSATLVDQA 1817
|
Regulates cell growth, chemotaxis, signal relay and the actin cytoskeleton. Functions as a part of 2 distinct protein complexes TORC1 and TORC2. TORC1 is a rapamycin-sensitive complex that controls cell growth in response to nutrients and growth factors. The second TOR complex, TORC2, is presumed to be indirectly negatively modulated by rapamycin and regulates actin polarization. TORC2 but not TORC1 negatively regulates phagocytosis. TORC2-dependent regulation of the cytoskeleton may follow differential phosphorylation of pkbA. May have some protein kinase activity, as it appears to phosphorylate pkgB. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|Q9Y7K2|TOR2_SCHPO Phosphatidylinositol 3-kinase tor2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tor2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1176 bits (3042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 711/1884 (37%), Positives = 1087/1884 (57%), Gaps = 135/1884 (7%)
Query: 40 KEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDV 99
+ A+ L +++ +R+L GEA +F + + + L+ S D + L + AI+ LID
Sbjct: 15 RNKAANDLYEYVIAYSRELSGEALVQFNNDVNKYVYTLIHSTDPLDRLAGVTAINRLIDY 74
Query: 100 ALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALD 159
GE+ +++++F+NY+R + D++ VLA+K LG LA GGA+T++ V F+VK AL+
Sbjct: 75 E-GEDTTRITRFANYLRIILP-GTDQKATVLAAKALGRLAVPGGALTSEFVNFEVKRALE 132
Query: 160 WLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALR 219
WL+G+R E RR+AAVLILKE+A+N ST+ H+ + +W LRDP + +R + +AL
Sbjct: 133 WLQGERNENRRYAAVLILKELAKNTSTLIYAHIDSIFELLWHGLRDPKVTIRIASADALS 192
Query: 220 ACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY 279
L+++ +R++ R+QWY + Q G+ + + + IHGSLL +L G FM RY
Sbjct: 193 EFLKIVRQRDSSIRLQWYTSILNEAQRGVAQGSSDY-IHGSLLVYRQLFLKAGMFMHERY 251
Query: 280 REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERD 339
REV++I+L++ +H+D L+R ++T L+ +A + D FV+NYL +CM H+L +L+ +
Sbjct: 252 REVSDIILQFRDHKDLLIRKTVTELIATLAAYNPDEFVSNYLHVCMLHLLNLLKKENVKM 311
Query: 340 SGFIALGEMAGALDGELFHYLPTITSHLREAIAPR-RGKPSLEA--LACVGNIARAMGPV 396
F +G++A A+ + YL I ++E++ R K + +A C+ ++ A+G
Sbjct: 312 LAFATIGKVAVAITNSIIPYLDPICDSIKESLKIHIRNKSASDAAIFQCISLLSIALGQA 371
Query: 397 MEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQAR 456
+ L D++F++GLS AL + +IP LLP IQ+RLLD +S +LS +
Sbjct: 372 FSNYAYDLFDLIFASGLSEASYRALSDLAHNIPPLLPVIQERLLDMLSKILSGRPFI--- 428
Query: 457 PAATPIRGNVMNIPQQVS----------DLNGSAPVQ---LALQTLARFNFKGHDLLEFA 503
P P PQ V+ G P LAL+ L F+F G+ L EF
Sbjct: 429 PPGCP--------PQYVARSLKSSKSASLKTGFFPNDVYILALKVLGNFDFSGYILNEFV 480
Query: 504 RDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVE 563
+D VV+YL++ D RK A++ C +L A ++T +++ E++E
Sbjct: 481 KDCVVVYLENNDPEVRKTASITCSQLFARD-----------PILSQTSDHAIQVVAEVLE 529
Query: 564 KLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVA 623
KLL + D +R ++ +SL + F+ LAQAD + +F A+NDE+F VRE A+ +
Sbjct: 530 KLLTVGICDTVPDIRLTVLNSL--DSRFNKHLAQADKIRLLFIAINDENFAVRESALRII 587
Query: 624 GRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAP 683
GRL+ NPAYV+P LR+ +++ LT L+ S+ + +EE+AKLL LI RLI ++ P
Sbjct: 588 GRLNVYNPAYVMPYLRKIMLKTLTILDYSTII-RTKEENAKLLCLLIAAAPRLIESHVEP 646
Query: 684 IHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAA 743
I + L+ + + + I A + ++ ++G++ ++ G + +I +LMPLI+EAL D ++
Sbjct: 647 ILQILLPKAKDSSSIVA-----ASIVNSLGEICQISGEVIVPFIKDLMPLIIEALQDQSS 701
Query: 744 VTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA 803
+R A+ LG + STGYVI PY E+P LL +L+ + E + RRE +K++G +GA
Sbjct: 702 PIRRAAALKALGNLSSSTGYVIDPYIEFPSLLDILIGITKTEQDITIRRETIKLIGTLGA 761
Query: 804 LDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMD-LWPSFATSEDYYSTVAINSL 862
LDP+ H+ ++ T ++I P M + PS S++YY TV I +L
Sbjct: 762 LDPNRHRVLEK-------GTEKVVPEQKNIPPDISLLMSGIGPS---SDEYYPTVVITAL 811
Query: 863 MRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWK 922
M IL+DPSL +H V+ ++M+IFK+MGL C P+L +++P+ +RTC + ++ +
Sbjct: 812 MSILKDPSLTIHHTAVIQAVMYIFKTMGLRCAPFLSQIIPEFIAVMRTCPTNILEFYFQQ 871
Query: 923 LGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFR 982
L LV IVRQHIR +L +LF LI + W+ P +N + +L L++ L A+ EF+
Sbjct: 872 LSILVLIVRQHIRSFLPDLFKLIKDFWN----PHSNLQF---TILSLIESLARAMQGEFK 924
Query: 983 THLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLF-KVDA 1041
+LP +L +Q+ + +LH VFG TL ++ H+LL ++RL+ + D
Sbjct: 925 PYLPSLLVMMLQIFDSDVSVD-SVSTKKVLHAFIVFGDTLADYFHMLLDPILRLYERNDV 983
Query: 1042 PVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGE 1101
+ I+ + + T+ RL + ++ + S ++H + +L N L + ++D +C L + L
Sbjct: 984 SIGIKESIMITIGRLSMVINLSEYASRIIHPVMRMLSCNNASLIRVSMDTVCALIYQLNV 1043
Query: 1102 DFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLILGSTAAQQLSRRVPVEVISDPLN 1161
DF IFIP I K L + + H+ + + + + +PL + + P E P
Sbjct: 1044 DFAIFIPMIDKCLKMNGVTHETYSILVEQFLQEQPLPI---------KLNPYEKYDKPKL 1094
Query: 1162 DVDSDPYEDGTDA----QKQLRGH-QASQRSTKEDWAEWMRHLSIELLKESPSPALRTCA 1216
DV + + + Q+ LR +ASQRSTK+DW EW+R L + LL+ESPS ALR CA
Sbjct: 1095 DVVASAADITSKKLPVNQEILRNAWEASQRSTKDDWQEWIRRLGVALLRESPSHALRACA 1154
Query: 1217 RLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNLAEF 1276
LA + R+LF A FVSCWS+L Q+ LV+S+E+A +SP+I PEI+ LLNLAEF
Sbjct: 1155 ALAAAYQPLARDLFNASFVSCWSELYDHFQEELVKSIEIALTSPHISPEIIQILLNLAEF 1214
Query: 1277 MEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINN 1336
MEHD+KPLPIDIR LGA A KC AFAKALHYKE+EF + V +EALI INN
Sbjct: 1215 MEHDDKPLPIDIRTLGAYAAKCHAFAKALHYKELEF--IEEELVTKPSVDTIEALISINN 1272
Query: 1337 QLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYTNK-ASQASNPHIVLEATL 1395
QL Q +AA+GIL +AQ+ + LKE+WYEKLQRW+DAL AY + A+ A N E T+
Sbjct: 1273 QLQQPDAAIGILKHAQQHDKMNLKETWYEKLQRWEDALSAYEKREAAGAGN----FEITM 1328
Query: 1396 GRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDD 1455
G++RCL AL W+ L+ L +E W A AR +AP++ AAW +G+W+QM EY+S +
Sbjct: 1329 GKLRCLHALGEWDRLSQLAQENWIHAGHDARRYIAPLSVAAAWGLGQWEQMDEYISVMK- 1387
Query: 1456 GDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVL----------ESYERAYSNMVRV 1505
ES + N F A + R + L ESY RAYS VRV
Sbjct: 1388 -SESPDKAFFNAIV---ALHRSQFEEAASYITRARDLLDTELTALVGESYNRAYSVAVRV 1443
Query: 1506 QQLSELEEVIDYCTLPVGNPVAEGR---RAIIRNMWTERIQGTKRNVEVWQALLAVRALV 1562
Q LSELEE+I Y AE + R +I+ W R++G +RNV+VWQ +L +R+LV
Sbjct: 1444 QMLSELEEIITYKK-------AEDKPEVREMIKKTWVRRLKGCQRNVDVWQRMLRIRSLV 1496
Query: 1563 LPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKY 1622
+ P +++E W+KFA+LCRKSGRIS A+ +L LL+ D + V P ++YA LK+
Sbjct: 1497 ISPRDNMEMWIKFANLCRKSGRISLAKKSLNLLLEDDENLDNSLVLKKTHPSIVYANLKF 1556
Query: 1623 QWSLGEDLKRKEAFARLQTLAMELSSCPVIQSA---ASTSLTTATSTN-----VPLIARV 1674
W++ D KRK A +Q +L S + A STS+ T S L+AR
Sbjct: 1557 LWAV--DDKRK-ALNSMQEFTSQLISDINVDPALFVQSTSVNTQKSQEEIQYYFHLLARC 1613
Query: 1675 YLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWAL--FNTAVMSHYTLR 1732
Y K G W++ + + S ++ +Y ATQ +KW KAWHSWAL F +
Sbjct: 1614 YHKQGQWQQEIENNWSEGSFDGVLQSYMYATQFDSKWYKAWHSWALANFEAVKFLEQSEE 1673
Query: 1733 GLPSVA-PQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQK 1791
+PS A Q+++ AV G+F SIA +KG +LQD LRLL LWF G V L
Sbjct: 1674 QIPSAAYEQYIIPAVKGFFKSIAL---SKG---NLQDTLRLLNLWFKFGNNSNVINTLNV 1727
Query: 1792 GFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISN 1851
G + VNI+ WL V+PQ+IARIH+++ +VR+ + LL +G++HPQAL+YPL VA KS S+
Sbjct: 1728 GISTVNIDIWLDVIPQLIARIHASSLSVRKSVHQLLSDVGRAHPQALVYPLTVAAKSQSS 1787
Query: 1852 LRRAAAQEVVDKVRQHSGVLVDQS 1875
R+ AA ++D ++ HS LV+Q+
Sbjct: 1788 ARQNAALAIMDSLKTHSPRLVEQA 1811
|
Phosphatidylinositol 3-kinase homolog required for G1 progression. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 1 EC: 3 EC: 7 |
| >sp|O14356|TOR1_SCHPO Phosphatidylinositol 3-kinase tor1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tor1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1082 bits (2797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 653/1866 (34%), Positives = 1047/1866 (56%), Gaps = 94/1866 (5%)
Query: 38 NPKEGASLA----LRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAI 93
N E LA L++ + ++L GE+ +RF + + RI L+ S+D+ E G + AI
Sbjct: 9 NKNESIQLAAADQLKEFVHSSTKELSGESLARFNNDINRRIFELIHSHDSHERFGGILAI 68
Query: 94 DELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQ 153
+LI+ + + +S+++NY+R D + L++KVLGHLA +GG + A+ VEF+
Sbjct: 69 GKLIEFESEGDVTNLSRYANYLRMTLP-STDWHSMELSAKVLGHLAASGGTLAAEFVEFE 127
Query: 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRER 213
V+ A +WL+GDR E +R AA+LI+K +A+N+ T+ ++++E +W LRDP +RE
Sbjct: 128 VQRAFEWLQGDRQEQKRMAAILIIKALAQNSPTLVYLYISEIFQNLWTGLRDPKPLIRET 187
Query: 214 AVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE 273
A +AL A L V+ +RE + ++Q + + + GL R + V +HGSLLA EL +G
Sbjct: 188 AADALGASLDVVCQREAKVQLQCFNEVLLQAEHGL-RQSSVEYLHGSLLAYKELFEKSGS 246
Query: 274 FMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLR 333
F+ Y E ++ LR EHRD +R I LLP ++ + +F YL M ++L+ +R
Sbjct: 247 FIREHYTEFCDLALRLREHRDNSIRRCIVFLLPTLSEYNPKKFQQRYLDSFMVYLLSHIR 306
Query: 334 IPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR-RGKPSLE--ALACVGNIA 390
E+ F A+G +A A++ + YL I +R+ + + R K E C+G +A
Sbjct: 307 KDKEKSLAFEAIGRIAMAVNEAMIPYLQNILKVIRDTLTAKVREKTQYEKPVFECIGMLA 366
Query: 391 RAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKS 450
A+ + R LL ++FS LS L AL ++ +IP LL IQ+RLL+ +S +L+
Sbjct: 367 AAVKLELLEDSRSLLGLIFSCELSVHLRQALVKMAENIPPLLAPIQERLLNMVSQILTGK 426
Query: 451 HYS-QARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVL 509
++ + TP N+ + + + + LAL+TL FNF G+ L+ F ++SV+
Sbjct: 427 NFEIRTNDTYTPSFTNIYSAREPDQRSKSTESIILALETLGTFNFTGYSLISFIQESVLS 486
Query: 510 YLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAA 569
YL++++ R AA CC++ A +T + E++EKLL
Sbjct: 487 YLENDNSEIRIAAARTCCQVFARD-----------PICRKTNPLAVESVAEVLEKLLTLG 535
Query: 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEK 629
+AD+D +R ++ S L + FD LA D + +F ALNDE F +RE AI + GRL+
Sbjct: 536 IADSDPKIRETVLSLL--DERFDRHLAHPDNIRCLFIALNDEVFSIREIAIIIIGRLALY 593
Query: 630 NPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALV 689
NPA+V+P+LR+ +IQLL+ +E S +++ +EESA+LL L+ LI+PYI I ++
Sbjct: 594 NPAHVMPSLRKTIIQLLSDMEYS-GNSRQKEESAQLLKLLVSKARTLIKPYIQSIIHVIL 652
Query: 690 ARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVEALLDGAAVTKRE 748
+ + + G+ S ++ +G+LA V G M + M LI+ L D ++ KR
Sbjct: 653 PK-----AADTSPGVSSAIISALGELASVEGEDMPVDVRGSFMKLILVNLQDQSSTLKRL 707
Query: 749 VAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHA 808
++ L ++ +GYVI PY +YP LLG L+ +L E RREVL+ LG++GALDP+
Sbjct: 708 ASLKCLRKLCGRSGYVIQPYLDYPPLLGALIGILQSEQPTPIRREVLRTLGVLGALDPYT 767
Query: 809 HKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRD 868
+ +++S +S + H P + +PS Y+ VA+ +L+ IL+D
Sbjct: 768 YLTTEEVSDD-----LQSSHNNAHGVP--QISAAQYPSLEN----YAMVAVVTLIGILKD 816
Query: 869 PSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVS 928
SL+ +H VV ++M I MG +LP+V+P +++ ++ +L TL S
Sbjct: 817 SSLSMHHSSVVQAVMHICSQMGSKSTVFLPQVVPTFLQVMQSLSASSAEFYFQQLTTLTS 876
Query: 929 IVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVI 988
I+ +IR Y+ ++F+L W S T L +L L+ + +AL DEF+ +LP I
Sbjct: 877 IIGPNIRDYVSDIFNLSKVFWES-------TTSLLLVILELIDAIAIALQDEFKFYLPQI 929
Query: 989 LPCCIQVLS-DAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDA-PVDIR 1046
L C ++ S D +Y +L + +FG ++E+MHL+LP +IR F+ D P+ R
Sbjct: 930 LSCMLKAFSLDNTSSRSVSY--KVLQSFVIFGSNIEEYMHLVLPVIIRSFERDTIPLGFR 987
Query: 1047 RAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIF 1106
++A++ + +L V + H S ++H L +L N +LR +D LC + LG D++IF
Sbjct: 988 KSALKCIAQLFQSVNFSDHASRIIHPLVRMLGKSNGDLRAVIMDTLCAIVSQLGYDYSIF 1047
Query: 1107 IPSIHKLLLKHRLRHKEFEEIEGRLRRREPLILGSTAAQQLSRRVPVEVISDPLNDVDSD 1166
IP ++K+L+ H++ H +E + RL + EPL ++ R + P + D
Sbjct: 1048 IPMVNKVLVSHKISHPAYELLVSRLLKGEPLP-KDVVVKEFKPRPSTK----PFSTQDEV 1102
Query: 1167 PYEDGTDAQKQLRGHQASQRSTKEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVG 1226
+ D ++SQ+ T++DW +W+R +SIELLKESPS ALR+C+ LA + +
Sbjct: 1103 LTKLPVDQASLKAAWESSQKLTRDDWQDWIRRISIELLKESPSSALRSCSTLAGIYHPLA 1162
Query: 1227 RELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPI 1286
R+LF F+SCW +L +++K+LV+S+E+A ++PNI EIL TLLNLAE+ME ++ LPI
Sbjct: 1163 RDLFNVSFLSCWDELTESNKKNLVKSIELAMNAPNISVEILQTLLNLAEYMEREDHTLPI 1222
Query: 1287 DIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVG 1346
I+++ A A KC +AKALHY E++F + ++ +E+LI INN L Q +AAVG
Sbjct: 1223 PIKVISAHASKCNVYAKALHYTELQFVQETKEEVS---ISTIESLITINNHLQQSDAAVG 1279
Query: 1347 ILTYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALAR 1406
+L Y ++ LKE+WYEKL RWDDAL AY ++ + + E +G++RC AL
Sbjct: 1280 MLQYTKEHKQFSLKETWYEKLHRWDDALAAYEHREREGDSS---FEINIGKLRCYYALGD 1336
Query: 1407 WEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGN 1466
W+ L+ L ++ W +E R +AP+AA AAW +G+W+ ++EYVS +D + K
Sbjct: 1337 WDHLSELAQKAWVTSEQEHREAIAPLAAAAAWGLGQWNLISEYVSAMDRDPQDK-EFFSA 1395
Query: 1467 TAANGDGSSNGTF-----FRAVLLVRRGKVL-ESYERAYSNMVRVQQLSELEEVIDYCTL 1520
+A G N + R +L+ ++ ESY RAY MV+ Q LSELEE+IDY
Sbjct: 1396 ISAVHLGQYNKAYGHIERHRDILVNDLSSIIGESYNRAYGIMVKSQMLSELEEIIDY--- 1452
Query: 1521 PVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCR 1580
N E ++ W +R++G ++NV+VW L RALVL P + E W+K A LCR
Sbjct: 1453 -KKNMQYENNLDSLKKTWRKRLEGCQKNVDVWHNTLRFRALVLSPQDSPEMWIKLADLCR 1511
Query: 1581 KSGRISQARSTLVKLLQYDPETSH--ENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFAR 1638
+S R+ + L L+ DP ++ ++++ P V+Y YLKY W+ + + A +
Sbjct: 1512 RSDRLKLSNQCLTYLMGRDPSNAYPLDSLKLLN-PHVVYTYLKYLWATDQ---KNIAVSE 1567
Query: 1639 LQTLAMELSSCPVIQSAASTSLT------TATSTNVPLIARVYLKLGSWKRALPPGLDDE 1692
L+ LSS + S+ L + +S +AR + KLG WK++L ++ E
Sbjct: 1568 LEEFTSYLSSKHGYKMGDSSKLVDILASSSVSSEERSFLARCFHKLGKWKKSLQDSVNQE 1627
Query: 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHY--TLRGLP-SVAPQFVVHAVTGY 1749
S+ +I+ Y AT W KAWHSWAL N V+ +Y T G+ + Q++V A+ G+
Sbjct: 1628 SVRDILNCYFYATLFDKSWYKAWHSWALANFEVVGYYEQTEHGVTQDMYEQYIVPAIKGF 1687
Query: 1750 FHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQII 1809
FHS +SLQDILRLL LWF G +V A+ +GF++V ++TWL V+PQ+I
Sbjct: 1688 FHSSVL-----NQKNSLQDILRLLNLWFKFGEHSDVAAAIVEGFSNVPMDTWLEVIPQLI 1742
Query: 1810 ARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSG 1869
ARIH+++ +VR + LL IG+ HPQAL+Y L V+ KS + ++ +A+ ++D + HS
Sbjct: 1743 ARIHTSSSSVRASVHQLLSDIGRVHPQALVYSLTVSSKSTNPQQKHSAKSIMDSMLSHSD 1802
Query: 1870 VLVDQS 1875
LV Q+
Sbjct: 1803 TLVRQA 1808
|
Phosphatidylinositol 3-kinase homolog required for G1 progression and entry into stationary phase. Also required for the onset of meiosis and sporulation under nitrogen and carbon starvation conditions. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 1 EC: 3 EC: 7 |
| >sp|P32600|TOR2_YEAST Serine/threonine-protein kinase TOR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOR2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1045 bits (2703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 676/1928 (35%), Positives = 1036/1928 (53%), Gaps = 167/1928 (8%)
Query: 39 PKEGASLA--LRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDEL 96
P+E AS A L + AR++ E F RF + L ++I L+ ++E +G + A+D L
Sbjct: 98 PQERASGANELSTTLTSLAREVSAEQFQRFSNSLNNKIFELIHGFTSSEKIGGILAVDTL 157
Query: 97 IDVALG--ENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQV 154
I L E ++ S+ +NY+R + D E++ LA+ LG L GG +T+D VEF+V
Sbjct: 158 ISFYLSTEELPNQTSRLANYLRVLIP-SSDIEVMRLAANTLGRLTVPGGTLTSDFVEFEV 216
Query: 155 KMALDWL--------RGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDP 206
+ +DWL ++EYRR AA+LI+K +A+N+ + +V +D IWV LRD
Sbjct: 217 RTCIDWLTLTADNNSSSSKLEYRRHAALLIIKALADNSPYLLYPYVNSILDNIWVPLRDA 276
Query: 207 TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGE 266
L +R A AL CL +I+ R+ QW+ R+F+ GL N S+H +LL E
Sbjct: 277 KLIIRLDAAVALGKCLTIIQDRDPALGKQWFQRLFQGCTHGLSLNTN-DSVHATLLVFRE 335
Query: 267 LLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMN 326
LL ++ +Y ++ + ++Y E++ ++R + ++LP +A F F YL M
Sbjct: 336 LLSLKAPYLRDKYDDIYKSTMKYKEYKFDVIRREVYAILPLLAAFDPAIFTKKYLDRIMV 395
Query: 327 HILTVLR-----IPAERDSGFI--ALGEMAGALDGELFHYLPTITSHLREAIAPR---RG 376
H L L+ D FI ++G++A + + Y+ I ++RE + + R
Sbjct: 396 HYLRYLKNIDMNAANNSDKPFILVSIGDIAFEVGSSISPYMTLILDNIREGLRTKFKVRK 455
Query: 377 KPSLEALACVGNIARAMGPVMEPHV-RGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTI 435
+ + C+G +A A+GP H+ + LL++M + +S + + L + IPSL T+
Sbjct: 456 QFEKDLFYCIGKLACALGPAFAKHLNKDLLNLMLNCPMSDHMQETLMILNEKIPSLESTV 515
Query: 436 QDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGS------------APVQ 483
R+L+ +S LS + Q+ N +I + N S Q
Sbjct: 516 NSRILNLLSISLSGEKFIQSNQYDF---NNQFSIEKARKSRNQSFMKKTGESNDDITDAQ 572
Query: 484 LALQTLARFNFKGHD--LLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQ 541
+ +Q H L EF R + Y++ ED + RK AAL C L
Sbjct: 573 ILIQCFKMLQLIHHQYSLTEFVRLITISYIEHEDSSVRKLAALTSCDLFIKD-------- 624
Query: 542 FGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCL 601
+T + E++ KLL+ A+ D +R I L N FD LAQ D L
Sbjct: 625 ---DICKQTSVHALHSVSEVLSKLLMIAITDPVAEIRLEILQHLGSN--FDPQLAQPDNL 679
Query: 602 SAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREE 661
+F ALNDE F ++ AI + GRLS NPAYV+P+LR+ L++LLT L+ S+ K +EE
Sbjct: 680 RLLFMALNDEIFGIQLEAIKIIGRLSSVNPAYVVPSLRKTLLELLTQLKFSNMPKK-KEE 738
Query: 662 SAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF 721
SA LL LI + + + +PYI PI ++ + + A++ + S L +G+L+ VGG
Sbjct: 739 SATLLCTLINSSDEVAKPYIDPILDVILPKCQD-----ASSAVASTALKVLGELSVVGGK 793
Query: 722 GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKM 781
M +Y+ ELMPLI+ D + KR+ A++TLGQ+ S+GYV+ P +YP+LLG+L+ +
Sbjct: 794 EMTRYLKELMPLIINTFQDQSNSFKRDAALTTLGQLAASSGYVVGPLLDYPELLGILINI 853
Query: 782 LNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPM 841
L E RR ++++GI+GALDP+ H+ + S S V + A P + +
Sbjct: 854 LKTENNPHIRRGTVRLIGILGALDPYKHREIEVTSNSKSSVEQNA--------PSIDIAL 905
Query: 842 DLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVL 901
+ ++++YY TV I++LM+IL DPSL+ +H + ++M IF+++GL CV +L +++
Sbjct: 906 LMQGVSPSNDEYYPTVVIHNLMKILNDPSLSIHHTAAIQAIMHIFQNLGLRCVSFLDQII 965
Query: 902 PDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTY 961
P + +R+C D+ +LG+L+SIV+QHIR ++++++ +I E + L T
Sbjct: 966 PGIILVMRSCPPSQLDFYFQQLGSLISIVKQHIRPHVEKIYGVIREFFPIIKLQIT---- 1021
Query: 962 RGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGT 1021
++ +++ + AL EF+ +P L + +L + ++ N + IL +L FG
Sbjct: 1022 ----IISVIESISKALEGEFKRFVPETLTFFLDILEN-DQSNKRIVPIRILKSLVTFGPN 1076
Query: 1022 LDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKN 1081
L+++ HL++P ++R+ + A +++ +I TL RL + ++ S +V L +L+ +
Sbjct: 1077 LEDYSHLIMPIVVRMTEYSAG-SLKKISIITLGRLAKNINLSEMSSRIVQALVRILNNGD 1135
Query: 1082 DELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLILGS 1141
EL K ++ L L LG DF +F+P I+K LL++R++H ++++ +L E L
Sbjct: 1136 RELTKATMNTLSLLLLQLGTDFVVFVPVINKALLRNRIQHSVYDQLVNKLLNNECL---- 1191
Query: 1142 TAAQQLSRRVPVEVISDPLNDV-DSDPYEDGTDAQKQLRGHQ-------ASQRSTKEDWA 1193
P +I D N+V + YED K SQ+ TKEDW
Sbjct: 1192 ----------PTNIIFDKENEVPERKNYEDEMQVTKLPVNQNILKNAWYCSQQKTKEDWQ 1241
Query: 1194 EWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSL 1253
EW+R LSI+LLKESPS LR+C+ L + + RELF A F SCW +L + Q+ L+Q+L
Sbjct: 1242 EWIRRLSIQLLKESPSACLRSCSSLVSVYYPLARELFNASFSSCWVELQTSYQEDLIQAL 1301
Query: 1254 EMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFE 1313
A SS PPEI LLNL EFMEHD+KPLPI I LG A+KC AFAKALHYKE+EF
Sbjct: 1302 CKALSSSENPPEIYQMLLNLVEFMEHDDKPLPIPIHTLGKYAQKCHAFAKALHYKEVEFL 1361
Query: 1314 GARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDA 1373
N + +EALI INNQLHQ ++A+GIL +AQ+ ++QLKE+WYEKLQRW+DA
Sbjct: 1362 EEPKN-------STIEALISINNQLHQTDSAIGILKHAQQHNELQLKETWYEKLQRWEDA 1414
Query: 1374 LKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMA 1433
L AY K + + +E +G++R L AL WEEL+ L E W A+P + MAP+A
Sbjct: 1415 LAAYNEKEAAGEDS---VEVMMGKLRSLYALGEWEELSKLASEKWGTAKPEVKKAMAPLA 1471
Query: 1434 ANAAWNMGEWDQMAEYVS--RLDDGDESKLRGLGNTAANGDGSSNGTFFRAV-LLVRRGK 1490
A AAW + +WD++A+Y S + D+ + N + F A LLV
Sbjct: 1472 AGAAWGLEQWDEIAQYTSVMKSQSPDKEFYDAILCLHRNNFKKAEVHIFNARDLLVTELS 1531
Query: 1491 VL--ESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRN 1548
L ESY RAY+ +VR Q ++ELEE+I Y LP + +R +R W R+ G ++N
Sbjct: 1532 ALVNESYNRAYNVVVRAQIIAELEEIIKYKKLPQNS----DKRLTMRETWNTRLLGCQKN 1587
Query: 1549 VEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVR 1608
++VWQ +L VR+LV+ P ED + +KFA+LCRKSGR++ A+ L LL+ + H N
Sbjct: 1588 IDVWQRILRVRSLVIKPKEDAQVRIKFANLCRKSGRMALAKKVLNTLLEETDDPDHPNTA 1647
Query: 1609 YHGPPQVMYAYLKYQWSLG-EDLKRKEAFARLQTLAMELSSCP---VIQSAASTS--LTT 1662
PP V+YA LKY W+ G +D K+ +A +L P + QS S +
Sbjct: 1648 KASPP-VVYAQLKYLWATGLQDEALKQLINFTSRMAHDLGLDPNNMIAQSVPQQSKRVPR 1706
Query: 1663 ATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722
L+AR +LK G W+ L P + I+ +Y AT W KAWH+WAL N
Sbjct: 1707 HVEDYTKLLARCFLKQGEWRVCLQPKWRLSNPDSILGSYLLATHFDNTWYKAWHNWALAN 1766
Query: 1723 TAVMSHYTL---------------------RGLPSVAP--------------QFVVHAVT 1747
V+S T G+ V + V+ A+
Sbjct: 1767 FEVISMLTSVSKKKQEGSDASSVTDINEFDNGMIGVNTFDAKEVHYSSNLIHRHVIPAIK 1826
Query: 1748 GYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQ 1807
G+FHSI+ + + SLQD LRLLTLWF G E A+ +GF + I TWL VLPQ
Sbjct: 1827 GFFHSISLSESS-----SLQDALRLLTLWFTFGGIPEATQAMHEGFNLIQIGTWLEVLPQ 1881
Query: 1808 IIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQH 1867
+I+RIH N+ V + SLL +G++HPQAL+YPL+VA KS S R+ AA +++K+R H
Sbjct: 1882 LISRIHQPNQIVSRSLLSLLSDLGKAHPQALVYPLMVAIKSESLSRQKAALSIIEKMRIH 1941
Query: 1868 SGVLVDQS 1875
S VLVDQ+
Sbjct: 1942 SPVLVDQA 1949
|
Phosphatidylinositol 3-kinase homolog, component of both TORC1 and TORC2. TORC1 regulates multiple cellular processes to control cell growth in response to environmental signals. Nutrient limitation and environmental stress signals cause inactivation of TORC1. Active TORC1 positively controls ribosome biogenesis via control of rRNA, ribosomal protein and tRNA gene expression, and rRNA processing. TORC1 positively controls protein biosynthesis by regulation of mRNA stability, translation initiation factor activity, and high-affinity amino acid permeases that serve to provide amino acids for use by the translation machinery. TORC1 also promotes growth by sequestering a number of nutrient and general stress-responsive transcription factors in the cytoplasm. TORC1 negatively controls macroautophagy, a process to recycle surplus cytoplasmic mass under nutrient starvation conditions. TORC1 controls many of these processes via TIP41-TAP42-mediated inhibition of the type 2A-related phosphatases PP2A and SIT4. TORC2 regulates cell cycle-dependent polarization of the actin-cytoskeleton, cell wall integrity, and receptor endocytosis. TORC2 controls polarity of the actin cytoskeleton, which is required for orienting the secretory pathway toward discrete growth sites, via the RHO1/PKC1/MAPK cell integrity pathway by activating the RHO1 guanine nucleotide exchange factor ROM2. TORC2 phosphorylates the AGC kinase YPK2, an upstream effector of the cell integrity pathway. TORC2 negatively regulates calcineurin-dependent stress signaling via phosphorylation of its effector SLM1-SLM2. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|P35169|TOR1_YEAST Serine/threonine-protein kinase TOR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 996 bits (2576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 659/1953 (33%), Positives = 1044/1953 (53%), Gaps = 183/1953 (9%)
Query: 26 LNRILADLCT-HGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAA 84
L +I +L + + ++ AS++L + +L E F + + ++I L+ + +
Sbjct: 74 LEKIFRELTSDYKEERKLASISLFDLLVSLEHELSIEEFQAVSNDINNKILELVHTKKTS 133
Query: 85 ENLGALRAIDELIDV-ALGEN-ASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG 142
+GA+ +ID LI A E ++ S+ + Y+R + D E++ LA+K LG LA G
Sbjct: 134 TRVGAVLSIDTLISFYAYTERLPNETSRLAGYLRGLIP-SNDVEVMRLAAKTLGKLAVPG 192
Query: 143 GAMTADEVEFQVKMALDWLRGD---------RVEYRRFAAVLILKEMAENASTVFNVHVA 193
G T+D VEF++K L+WL + ++ + AA+LI+ +AEN + ++
Sbjct: 193 GTYTSDFVEFEIKSCLEWLTASTEKNSFSSSKPDHAKHAALLIITALAENCPYLLYQYLN 252
Query: 194 EFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAP 253
+D IW ALRDP L +R A L CL + R+ + QW R+ + + G N
Sbjct: 253 SILDNIWRALRDPHLVIRIDASITLAKCLSTLRNRDPQLTSQWVQRLATSCEYGFQVNT- 311
Query: 254 VHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR 313
+ IH SLL E+L F+ + ++ + Y H+ +++R I ++P +A F
Sbjct: 312 LECIHASLLVYKEILFLKDPFLNQVFDQMCLNCIAYENHKAKMIREKIYQIVPLLASFNP 371
Query: 314 DRFVTNYLKICMNHILTVL------RIPAERDSG---FIALGEMAGALDGELFHYLPTIT 364
F YL M++ L +L +IP +D I++G++A + ++ Y+ I
Sbjct: 372 QLFAGKYLHQIMDNYLEILTNAPANKIPHLKDDKPQILISIGDIAYEVGPDIAPYVKQIL 431
Query: 365 SHLREAIAPR---RGKPSLEALACVGNIARAMGPVMEPHV-RGLLDIMFSAGLSTTLVDA 420
++ + + R K E C+G +A +GPV+ + R +LD+MF LS + +
Sbjct: 432 DYIEHDLQTKFKFRKKFENEIFYCIGRLAVPLGPVLGKLLNRNILDLMFKCPLSDYMQET 491
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQ----------ARPAATPIRGNVMNIP 470
+ +T IPSL P I D LL+ + LS + + Q +R A R NI
Sbjct: 492 FQILTERIPSLGPKINDELLNLVCSTLSGTPFIQPGSPMEIPSFSRERAREWRNK--NIL 549
Query: 471 QQVSDLNG-SAPVQLALQTLARF-NFKGH-DLLEFARDSVVLYLDDEDKATRKDAALCCC 527
Q+ + N + +++ +Q N K L+EF R + Y++ D RK AAL C
Sbjct: 550 QKTGESNDDNNDIKIIIQAFRMLKNIKSRFSLVEFVRIVALSYIEHTDPRVRKLAALTSC 609
Query: 528 KLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG 587
++ + +T + E++ KLL +AD +R + +L
Sbjct: 610 EIYVKD-----------NICKQTSLHSLNTVSEVLSKLLAITIADPLQDIRLEVLKNL-- 656
Query: 588 NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLT 647
N FD LAQ D L +F AL+DE F+++ A+ + GRLS NPAYV+P++R+ L++LLT
Sbjct: 657 NPCFDPQLAQPDNLRLLFTALHDESFNIQSVAMELVGRLSSVNPAYVIPSIRKILLELLT 716
Query: 648 YLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISG 707
L+ S++ + +EE+A LL LIR+ + + +PYI P+ L+ + + + + S
Sbjct: 717 KLKFSTSSRE-KEETASLLCTLIRSSKDVAKPYIEPLLNVLLPKFQDTSST-----VAST 770
Query: 708 VLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITP 767
L T+G+L+ VGG M+ Y+ +L PLI++ D + KRE A+ LGQ+ S+GYVI P
Sbjct: 771 ALRTIGELSVVGGEDMKIYLKDLFPLIIKTFQDQSNSFKREAALKALGQLAASSGYVIDP 830
Query: 768 YNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAAS 827
+YP+LLG+L+ +L E + RR+ + ++GI+GA+DP+ K EVT
Sbjct: 831 LLDYPELLGILVNILKTENSQNIRRQTVTLIGILGAIDPYRQKER--------EVTSTTD 882
Query: 828 DSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFK 887
S + P + + + ++++YY+TV I+ L++IL+DPSL+SYH V+ ++M IF+
Sbjct: 883 ISTEQNAPPIDIALLMQGMSPSNDEYYTTVVIHCLLKILKDPSLSSYHTAVIQAIMHIFQ 942
Query: 888 SMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISE 947
++GL CV +L +++P + +RTC L ++ +L +L+ IVRQHIR ++ +F I +
Sbjct: 943 TLGLKCVSFLDQIIPTILDVMRTCSQSLLEFYFQQLCSLIIIVRQHIRPHVDSIFQAIKD 1002
Query: 948 LWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTY 1007
S L T ++ +++ + AL EF+ +P+ L + +L + ++ +D
Sbjct: 1003 FSSVAKLQIT--------LVSVIEAISKALEGEFKRLVPLTLTLFLVILEN-DKSSDKVL 1053
Query: 1008 VLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHIS 1067
+L LE FG L+ + HL+ P ++++ + + +++R+AI T+ +L V + S
Sbjct: 1054 SRRVLRLLESFGPNLEGYSHLITPKIVQMAEFTSG-NLQRSAIITIGKLAKDVDLFEMSS 1112
Query: 1068 SLVHHLKLVLDGK-NDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEE 1126
+VH L VL +DEL K ++ L L +G F IFIP I+++L+K ++H +++
Sbjct: 1113 RIVHSLLRVLSSTTSDELSKVIMNTLSLLLIQMGTSFAIFIPVINEVLMKKHIQHTIYDD 1172
Query: 1127 IEGRLRRREPLILGSTAAQQLSRRVPVEVISDPLNDVDSDPYE--DGTDA--------QK 1176
+ R+ + L P +++ N D P E + DA Q
Sbjct: 1173 LTNRILNNDVL--------------PTKILE--ANTTDYKPAEQMEAADAGVAKLPINQS 1216
Query: 1177 QLRGH-QASQRSTKEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFV 1235
L+ +SQ+ TKEDW EW + LSI+LLKESPS ALR C+ LA + + +ELF F
Sbjct: 1217 VLKSAWNSSQQRTKEDWQEWSKRLSIQLLKESPSHALRACSNLASMYYPLAKELFNTAFA 1276
Query: 1236 SCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALA 1295
W++L + Q+ L+ SL +A SSP PPEI TLLNL EFMEHD+K LPI + LG A
Sbjct: 1277 CVWTELYSQYQEDLIGSLCIALSSPLNPPEIHQTLLNLVEFMEHDDKALPIPTQSLGEYA 1336
Query: 1296 EKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL 1355
E+C A+AKALHYKE++F N + +E+LI INNQL+Q +AA+GIL +AQ+
Sbjct: 1337 ERCHAYAKALHYKEIKFIKEPEN-------STIESLISINNQLNQTDAAIGILKHAQQHH 1389
Query: 1356 DVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCK 1415
+QLKE+W+EKL+RW+DAL AY N+ +A + + TLG+MR L AL WE+L+ L
Sbjct: 1390 SLQLKETWFEKLERWEDALHAY-NEREKAGDTSV--SVTLGKMRSLHALGEWEQLSQLAA 1446
Query: 1416 EYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRL--DDGDESKLRGLGNTAANG-D 1472
W ++ + +AP+AA AAW +GEWD + +Y+S + D+ + N D
Sbjct: 1447 RKWKVSKLQTKKLIAPLAAGAAWGLGEWDMLEQYISVMKPKSPDKEFFDAILYLHKNDYD 1506
Query: 1473 GSSNGTFFRAVLLVRRGKVL--ESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGR 1530
+S LLV L ESY RAYS +VR Q ++E EE+I Y LP P +E +
Sbjct: 1507 NASKHILNARDLLVTEISALINESYNRAYSVIVRTQIITEFEEIIKYKQLP---PNSE-K 1562
Query: 1531 RAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARS 1590
+ +N+WT+R+ G ++NV++WQ +L VR+LV+ P +D++ W+KFA+LCRKSGR+ A
Sbjct: 1563 KLHYQNLWTKRLLGCQKNVDLWQRVLRVRSLVIKPKQDLQIWIKFANLCRKSGRMRLANK 1622
Query: 1591 TLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARL----QTLAMEL 1646
L LL+ + S N + PP V+YA LKY W+ G KEA L LA +L
Sbjct: 1623 ALNMLLEGGNDPSLPNT-FKAPPPVVYAQLKYIWATG---AYKEALNHLIGFTSRLAHDL 1678
Query: 1647 SSCPVIQSAASTSLTTATST-----NVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAY 1701
P A S L++A++ L+AR +LK G W+ A P + + I+ +Y
Sbjct: 1679 GLDPNNMIAQSVKLSSASTAPYVEEYTKLLARCFLKQGEWRIATQPNWRNTNPDAILGSY 1738
Query: 1702 RNATQCATKWGKAWHSWALFNTAVMS---------------------------------- 1727
AT W KAWH+WAL N V+S
Sbjct: 1739 LLATHFDKNWYKAWHNWALANFEVISMVQEETKLNGGKNDDDDDTAVNNDNVRIDGSILG 1798
Query: 1728 --HYTLRG--LP-SVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGAT 1782
T+ G P + + VV A+ G+FHSI+ + LQD LRLLTL FN G
Sbjct: 1799 SGSLTINGNRYPLELIQRHVVPAIKGFFHSISLLETS-----CLQDTLRLLTLLFNFGGI 1853
Query: 1783 EEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPL 1842
+EV A+ +GF + I WL VLPQ+I+RIH + V + SLL +G++HPQAL+YPL
Sbjct: 1854 KEVSQAMYEGFNLMKIENWLEVLPQLISRIHQPDPTVSNSLLSLLSDLGKAHPQALVYPL 1913
Query: 1843 LVACKSISNLRRAAAQEVVDKVRQHSGVLVDQS 1875
VA KS S R+ AA +++K+R HS VLV+Q+
Sbjct: 1914 TVAIKSESVSRQKAALSIIEKIRIHSPVLVNQA 1946
|
Phosphatidylinositol 3-kinase homolog, component of TORC1, which regulates multiple cellular processes to control cell growth in response to environmental signals. Nutrient limitation and environmental stress signals cause inactivation of TORC1. Active TORC1 positively controls ribosome biogenesis via control of rRNA, ribosomal protein and tRNA gene expression, and rRNA processing. TORC1 positively controls protein biosynthesis by regulation of mRNA stability, translation initiation factor activity, and high-affinity amino acid permeases that serve to provide amino acids for use by the translation machinery. TORC1 also promotes growth by sequestering a number of nutrient and general stress-responsive transcription factors in the cytoplasm. TORC1 negatively controls macroautophagy, a process to recycle surplus cytoplasmic mass under nutrient starvation conditions. TORC1 controls many of these processes via TIP41-TAP42-mediated inhibition of the type 2A-related phosphatases PP2A and SIT4. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9VK45|TOR_DROME Target of rapamycin OS=Drosophila melanogaster GN=Tor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 954 bits (2467), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 671/1995 (33%), Positives = 1014/1995 (50%), Gaps = 241/1995 (12%)
Query: 38 NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELI 97
N + A+ L +++ + R++ E ++F D+ I ++ + D E G A+ LI
Sbjct: 20 NVQNKATQDLLFYVKTELREMSQEELAQFFDEFDHHIFTMVNATDINEKKGGALAMKCLI 79
Query: 98 DVALGENASK-VSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKM 156
+ A K +S + N +R + + D ++ +A++ L LA + AD +F +K
Sbjct: 80 NCEGSLTARKGISPYLNRLRDLLLIN-DVSVMEIAARSLVKLANMPTSKGADSFDFDIKK 138
Query: 157 ALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVE 216
A + LRG+R EYRR +AV IL+E+A T F H+ F + I+ A+ DP A+RE A E
Sbjct: 139 AFEVLRGERQEYRRHSAVFILRELAIALPTYFYQHILTFFEVIFNAIFDPKPAIRESAGE 198
Query: 217 ALRACLRVIEKRETRWRV---QWYYRMFEAT-------------QDGLGRNAPVHSIHGS 260
ALRA L V +RE+ + QWY ++ Q G+ R+ IHG
Sbjct: 199 ALRAALIVTAQRESTKQSSEPQWYRICYDEANGSFNADLGSSKDQKGVTRD---DRIHGG 255
Query: 261 LLAVGELLRNTGEFMMSRYREVAEIVL-----RYLEHRDRLVRLS-ITSLLPRI------ 308
L+ EL R RY + + ++LE S + +L+PR+
Sbjct: 256 LVVFNELFRCANATWERRYTSLKTLFPKTQHNKFLEASSSSSMGSQLNTLVPRLKVPFID 315
Query: 309 ----------------------------AHFLRDRFVTNYLKICMNHILTVLRIPAERDS 340
+ + ++ +Y IC N +
Sbjct: 316 KLGSTQTHLGEGEHHKGVAKFASHNVLESAYAQEILQEHYTSICDNVLEQRTSKSPYVQQ 375
Query: 341 GFIALGEMAGALDGELF--HYLPTITSHLREAIAPRRGKPSLEALA--CVGNIARAMGPV 396
+ + A + +F YL T SHL + + RGK +A +G +A A+
Sbjct: 376 ALLQILPRLAAFNRAVFVEKYLQTCVSHLMQIL---RGKEKDRTVAYITIGYMAVAVQSA 432
Query: 397 MEPHVRGLLDIMFSAGLSTTLVDALE-----QITVSIPSLLPTIQDRLLDCISFVLSKSH 451
+E H+ ++ + A S L + + I L ++ + D + +L +
Sbjct: 433 IEVHLSSIMTSVKVALPSKDLTSKRKVPVDPAVFACITLLAHAVKSEIADDVKDILEQMF 492
Query: 452 YSQARPAATP-IRGNVMNIPQQVSDL---------------------------------- 476
Y+ PA T +R N+PQ S +
Sbjct: 493 YTGLSPALTVCLRELSENVPQLKSAITEGLIGILSQVLMNKAAILPYTALPTIAIDGSLM 552
Query: 477 -NGS-APVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSF 534
NG A LAL+TL FNF+ ++L+F + ++ E + R +A C +L+ +
Sbjct: 553 QNGDGATTVLALKTLGTFNFEEQNMLDFVQRCADYFIVHEQQEIRLEAVQTCTRLLKLAV 612
Query: 535 SGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDF 594
+S S + ++E+LL+ A+ D D VR I SL + FD
Sbjct: 613 Q--------SSESMENSKTLSDTVSHVIERLLMVAITDMDCNVRIRILRSL--DETFDGK 662
Query: 595 LAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSA 654
LAQ + L+++F L+DE F++RE A+ GRLS NPAYV+P LR +I+L+T L+ S
Sbjct: 663 LAQPESLNSLFITLHDEIFEIRELAMVTIGRLSSINPAYVMPKLRTTMIELITDLKYSGM 722
Query: 655 DNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGD 714
++ +E+SAK+L L+ + RLI Y+ PI KALV +L E +N G+I VL T+GD
Sbjct: 723 -SRNKEQSAKMLDHLVISTPRLISSYMNPILKALVPKLHEP---ESNPGVILNVLRTIGD 778
Query: 715 LARVGGFG--MRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYP 772
LA V G M + +L+ +++E L D + KR VA+ TLGQ++ +TG V+TPY++YP
Sbjct: 779 LAEVNGGSDEMELWADDLLSILLEMLGDAGSPDKRGVALWTLGQLISATGRVVTPYHKYP 838
Query: 773 QLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQH 832
L+ +L+ L E S RRE ++VLG++GA+DP+ HK N+ L S + A G+
Sbjct: 839 VLIDILINFLKTEQRRSIRRETIRVLGLLGAMDPYKHKMNKGLIDSQKDNVLIAYSDGKV 898
Query: 833 IQPMDEFPMDLWPSFATS-EDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGL 891
+ D +L + + ++YY VAI +LMRILRDP+L++ H VV ++ FIF+S+G+
Sbjct: 899 DESQDISTAELLVNMGNALDEYYPAVAIAALMRILRDPTLSTRHTSVVQAVTFIFQSLGI 958
Query: 892 GCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSS 951
CVPYL +VLP+L VRT D+ L++++ +L LV+ V+ HI Y+ ++F LI E W +
Sbjct: 959 KCVPYLAQVLPNLLDNVRTADNNLREFLFQQLAILVAFVKLHIISYMGDIFKLIKEFW-T 1017
Query: 952 FSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDI 1011
+ P N +++L++Q+ +AL EFR +L ++P ++VL + D +
Sbjct: 1018 INTPLQN------TLINLIEQIAVALGCEFRDYLAELIPQILRVLQH-DNSKDRMVTRRL 1070
Query: 1012 LHTLEVFGGTLDEHMHLLLPALIRLFKVD-APVDIRRAAIETLTRLIPRVQVTGHISSLV 1070
L L+ FG TL ++ L+LP +++LF P + A+ET+ L ++ T S ++
Sbjct: 1071 LQALQKFGSTLGYYLPLILPPIVKLFDSPYVPQQVSMVALETINNLACQLDFTDFSSRII 1130
Query: 1071 HHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGR 1130
H L VLD + ELR A+ L LA LG+ + +F+P + + L KHR+ E+EE+ +
Sbjct: 1131 HPLVRVLDAE-PELRDQAMTTLRSLAKQLGKKYLVFVPMVQRTLNKHRIVDPEYEELLSK 1189
Query: 1131 LRRREPLILGSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQASQRSTKE 1190
++ L A + R + + D +S+ + Q ++R +K+
Sbjct: 1190 IKSCSTLADSYGAGESELRPSRFKNNEPFVTDRNSNNKNLQVTTNELRTAWQVTRRVSKD 1249
Query: 1191 DWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLV 1250
DW EW++ LSI LLKESPS ALR C LAQ + R+LF A F+SCW++L+ + L
Sbjct: 1250 DWVEWLKRLSIGLLKESPSHALRACRSLAQEYDTLLRDLFNAAFISCWTELSPDLKNELT 1309
Query: 1251 QSLEMAFSSPNIPPEILATLLNLAEFMEH-DEKPLPIDIRLLGALAEKCRAFAKALHYKE 1309
QSL A ++ PEI T+LNLAEFMEH D P+PI+ +LLG A CRA+AKAL YKE
Sbjct: 1310 QSLIQALQVTDM-PEITQTILNLAEFMEHCDRDPIPIETKLLGTRAMACRAYAKALRYKE 1368
Query: 1310 MEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILT---YAQKELDVQLKESWYEK 1366
EF R D+ V E+LI INN+L Q EAA G+LT A EL+VQ + WYEK
Sbjct: 1369 EEF----LLREDSQ---VFESLILINNKLQQREAAEGLLTRYRNAANELNVQGR--WYEK 1419
Query: 1367 LQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAAR 1426
L WD+AL+ Y S+ LEA LG MRCL AL W EL+N+ K W A+
Sbjct: 1420 LHNWDEALEHYERNLKTDSSD---LEARLGHMRCLEALGDWSELSNVTKHEWENFGTEAK 1476
Query: 1427 LEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLV 1486
P+AA AAW + +W+ M EYV + + + +G+++RAVL V
Sbjct: 1477 SRAGPLAAVAAWGLQDWEAMREYVRCI-----------------PEDTQDGSYYRAVLAV 1519
Query: 1487 RRGKVL----------------------ESYERAYSNMVRVQQLSELEEVIDYCTLPVGN 1524
ESYERAY MV VQ L+ELEEVI Y +P
Sbjct: 1520 HHDDFETAQRLIDETRDLLDTELTSMAGESYERAYGAMVCVQMLAELEEVIQYKLIP--- 1576
Query: 1525 PVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGR 1584
RR ++ MW +R+QG +R VE W+ ++ V +LV+ P ED+ TWLK+ASLCRKSG
Sbjct: 1577 ----ERREPLKTMWWKRLQGGQRLVEDWRRIIQVHSLVVKPHEDIHTWLKYASLCRKSGS 1632
Query: 1585 ISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARL----Q 1640
+ + TLV LL DP+ + PQV YAY KY + + + +EA+ +L
Sbjct: 1633 LHLSHKTLVMLLGTDPKLNPNQPLPCNQPQVTYAYTKY---MAANNQLQEAYEQLTHFVS 1689
Query: 1641 TLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAA 1700
T + ELS P + L+AR YL++ +W+ L + ++I +
Sbjct: 1690 TYSQELSCLPP---------EALKQQDQRLMARCYLRMATWQNKLQDSIRPDAIQGALEC 1740
Query: 1701 YRNATQCATKWGKAWHSWALFNTAV-----------------MSHYTLRGLPS---VAPQ 1740
+ AT W KAWH WA N V M GL S + +
Sbjct: 1741 FEKATSYDPNWYKAWHLWAYMNFKVVQAQKSALDKQQPPGASMGMTMGSGLDSDLMIIQR 1800
Query: 1741 FVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINT 1800
+ V AV G+F SI+ KG +SLQD LRLLTLWF++G EV AL G + INT
Sbjct: 1801 YAVPAVQGFFRSISL---IKG--NSLQDTLRLLTLWFDYGNHAEVYEALLSGMKLIEINT 1855
Query: 1801 WLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEV 1860
WL V+PQ+IARI ++ + V +LI LL+ IG++HPQAL+YPL VA KS S RR AA ++
Sbjct: 1856 WLQVIPQLIARIDTHRQLVGQLIHQLLMDIGKNHPQALVYPLTVASKSASLARRNAAFKI 1915
Query: 1861 VDKVRQHSGVLVDQS 1875
+D +R+HS LV+Q+
Sbjct: 1916 LDSMRKHSPTLVEQA 1930
|
Promotes cell and tissue growth, maintains tissue homeostatis and controls responses to environmental stress and aging. Regulates growth during animal development by coupling growth factor signaling to nutrient availability. Central regulators of autophagy. May be involved in atg1 phosphorylation. May also be involved, directly or indirectly, in the control of neuronal function. Phosphorylates S6K/p70S6K, in vitro. May regulate the activity of S6K. Overexpression inhibits growth and reduces cell size. Affects the timing of neuronal cell differentiation. Hyperactivation of the signaling leads to accelerated differentiation, whereas inhibition of the signaling retards differentiation. Thus, in addition to controlling growth of the cell in which it resides, it can also influence growth of distant cells and organs during development via a humoral mechanism. In short, during development, it primarily controls growth, whereas in the adult, where there is relatively little growth, it controls aging and other aspects of nutrient-related physiology. Rag GTPases act as activators of TORC1 in response to amino acid signals. Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|Q9JLN9|MTOR_MOUSE Serine/threonine-protein kinase mTOR OS=Mus musculus GN=Mtor PE=1 SV=2 | Back alignment and function description |
|---|
Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/1528 (37%), Positives = 865/1528 (56%), Gaps = 150/1528 (9%)
Query: 269 RNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFV-TNYLKICMNH 327
R + M ++ +V + VL+ ++ L++++I +LLPR+A F F T YL+ MNH
Sbjct: 360 RCCRDLMEEKFDQVCQWVLKCRSSKNSLIQMTILNLLPRLAAFRPSAFTDTQYLQDTMNH 419
Query: 328 ILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAP------RRGKPSLE 381
+L+ ++ ER + F ALG ++ A+ E YLP + +R A+ P R+ ++
Sbjct: 420 VLSCVKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDIIRAALPPKDFAHKRQKTVQVD 479
Query: 382 A--LACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRL 439
A C+ +ARAMGP ++ ++ LL+ M + GLS L L ++ IP L IQD L
Sbjct: 480 ATVFTCISMLARAMGPGIQQDIKELLEPMLAVGLSPALTAVLYDLSRQIPQLKKDIQDGL 539
Query: 440 LDCISFVLSKS---HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKG 496
L +S VL H + A + + + SD+ A + LAL+TL F F+G
Sbjct: 540 LKMLSLVLMHKPLRHPGMPKGLAHQLASPGLTTLPEASDV---ASITLALRTLGSFEFEG 596
Query: 497 HDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRR 556
H L +F R +L+ E K R +AA C +L+ S +S S++ +
Sbjct: 597 HSLTQFVRHCADHFLNSEHKEIRMEAARTCSRLLTPSIHLISGHAHVVSQTAV------Q 650
Query: 557 LIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVR 616
++ +++ KLL+ + D D +R+ + +SL + FD LAQA+ L A+F ALND+ F++R
Sbjct: 651 VVADVLSKLLVVGITDPDPDIRYCVLASL--DERFDAHLAQAENLQALFVALNDQVFEIR 708
Query: 617 EYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL 676
E AI GRLS NPA+V+P LR+ LIQ+LT LE S + +E+SA++LG L+ N RL
Sbjct: 709 ELAICTVGRLSSMNPAFVMPFLRKMLIQILTELEHSGI-GRIKEQSARMLGHLVSNAPRL 767
Query: 677 IRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE 736
IRPY+ PI KAL+ +L + + N G+I+ VL T+G+LA+V G MR+++ EL +I++
Sbjct: 768 IRPYMEPILKALILKL-KDPDPDPNPGVINNVLATIGELAQVSGLEMRKWVDELFIIIMD 826
Query: 737 ALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLK 796
L D + + KR+VA+ TLGQ+V STGYV+ PY +YP LL +LL L E TRRE ++
Sbjct: 827 MLQDSSLLAKRQVALWTLGQLVASTGYVVEPYRKYPTLLEVLLNFLKTEQNQGTRREAIR 886
Query: 797 VLGIMGALDPHAHKRNQQLSGSHGEVTRAA------------SDSGQHIQPMDEFPMDLW 844
VLG++GALDP+ HK N + + + + + + + M P+D
Sbjct: 887 VLGLLGALDPYKHKVNIGMIDQSRDASAVSLSESKSSQDSSDYSTSEMLVNMGNLPLD-- 944
Query: 845 PSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDL 904
++Y V++ +LMRI RD SL+ +H VV ++ FIFKS+GL CV +LP+V+P
Sbjct: 945 -------EFYPAVSMVALMRIFRDQSLSHHHTMVVQAITFIFKSLGLKCVQFLPQVMPTF 997
Query: 905 FHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGL 964
+ +R CD +++++ +LG LVS V+ HIR Y+ E+ +L+ E W N + +
Sbjct: 998 LNVIRVCDGAIREFLFQQLGMLVSFVKSHIRPYMDEIVTLMREFW------VMNTSIQST 1051
Query: 965 PVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDE 1024
+L L++Q+ +AL EF+ +LP ++P ++V + + +L +++FG LD+
Sbjct: 1052 IIL-LIEQIVVALGGEFKLYLPQLIPHMLRVFMH-DNSQGRIVSIKLLAAIQLFGANLDD 1109
Query: 1025 HMHLLLPALIRLFKV-DAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDE 1083
++HLLLP +++LF + P+ R+AA+ET+ RL + T + S ++H + LD ++ E
Sbjct: 1110 YLHLLLPPIVKLFDAPEVPLPSRKAALETVDRLTESLDFTDYASRIIHPIVRTLD-QSPE 1168
Query: 1084 LRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRR--------RE 1135
LR A+D L L LG+ + IFIP ++K+L++HR+ H+ ++ + R+ + +
Sbjct: 1169 LRSTAMDTLSSLVFQLGKKYQIFIPMVNKVLVRHRINHQRYDVLICRIVKGYTLADEEED 1228
Query: 1136 PLI-----LGSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQASQRSTKE 1190
PLI L S+ L+ PVE + P+ + + + QK A++R +K+
Sbjct: 1229 PLIYQHRMLRSSQGDALASG-PVE--TGPMKKL----HVSTINLQK---AWGAARRVSKD 1278
Query: 1191 DWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLV 1250
DW EW+R LS+ELLK+S SP+LR+C LAQ + R+LF A FVSCWS+LN Q L+
Sbjct: 1279 DWLEWLRRLSLELLKDSSSPSLRSCWALAQAYNPMARDLFNAAFVSCWSELNEDQQDELI 1338
Query: 1251 QSLEMAFSSPNIPPEILATLLNLAEFMEHDEK-PLPI----DIRLLGALAEKCRAFAKAL 1305
+S+E+A +S +I E+ TLLNLAEFMEH +K PLP+ I LLG A KCRA+AKAL
Sbjct: 1339 RSIELALTSQDI-AEVTQTLLNLAEFMEHSDKGPLPLRDDNGIVLLGERAAKCRAYAKAL 1397
Query: 1306 HYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL-DVQLKESWY 1364
HYKE+EF+ + A++E+LI INN+L Q EAA G+L YA K +++++ +WY
Sbjct: 1398 HYKELEFQKGPTP-------AILESLISINNKLQQPEAASGVLEYAMKHFGELEIQATWY 1450
Query: 1365 EKLQRWDDALKAYTNKA-SQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEP 1423
EKL W+DAL AY K + +P E LGRMRCL AL W +L+ C E WT
Sbjct: 1451 EKLHEWEDALVAYDKKMDTNKEDP----ELMLGRMRCLEALGEWGQLHQQCCEKWTLVND 1506
Query: 1424 AARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAV 1483
+ +MA MAA AAW +G+WD M EY T + +G F+RAV
Sbjct: 1507 ETQAKMARMAAAAAWGLGQWDSMEEY-----------------TCMIPRDTHDGAFYRAV 1549
Query: 1484 L------------LVRRGKVL----------ESYERAYSNMVRVQQLSELEEVIDYCTLP 1521
L + + + L ESY RAY MV LSELEEVI Y +P
Sbjct: 1550 LALHQDLFSLAQQCIDKARDLLDAELTAMAGESYSRAYGAMVSCHMLSELEEVIQYKLVP 1609
Query: 1522 VGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRK 1581
RR IIR +W ER+QG +R VE WQ +L VR+LV+ P ED+ TWLK+ASLC K
Sbjct: 1610 -------ERREIIRQIWWERLQGCQRIVEDWQKILMVRSLVVSPHEDMRTWLKYASLCGK 1662
Query: 1582 SGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQT 1641
SGR++ A TLV LL DP ++ PQV YAY+K W + ++ +AF +Q
Sbjct: 1663 SGRLALAHKTLVLLLGVDPSRQLDHPLPTAHPQVTYAYMKNMW---KSARKIDAFQHMQH 1719
Query: 1642 LAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAY 1701
+ Q A +T L+AR +LKLG W+ L G+++ +IP+++ Y
Sbjct: 1720 FVQTMQQ--QAQHAIATEDQQHKQELHKLMARCFLKLGEWQLNL-QGINESTIPKVLQYY 1776
Query: 1702 RNATQCATKWGKAWHSWALFNTAVMSHY 1729
AT+ W KAWH+WA+ N + HY
Sbjct: 1777 SAATEHDRSWYKAWHAWAVMNFEAVLHY 1804
|
Serine/threonine protein kinase which is a central regulator of cellular metabolism, growth and survival in response to hormones, growth factors, nutrients, energy and stress signals. Functions as part of 2 structurally and functionally distinct signaling complexes mTORC1 and mTORC2 (mTOR complex 1 and 2). Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. This includes phosphorylation of EIF4EBP1 and release of its inhibition toward the elongation initiation factor 4E (eiF4E). Moreover, phosphorylates and activates RPS6KB1 and RPS6KB2 that promote protein synthesis by modulating the activity of their downstream targets including ribosomal protein S6, eukaryotic translation initiation factor EIF4B and the inhibitor of translation initiation PDCD4. Regulates ribosome synthesis by activating RNA polymerase III-dependent transcription through phosphorylation and inhibition of MAF1 a RNA polymerase III-repressor. In parallel to protein synthesis, also regulates lipid synthesis through SREBF1/SREBP1 and LPIN1. To maintain energy homeostasis mTORC1 may also regulate mitochondrial biogenesis through regulation of PPARGC1A. mTORC1 also negatively regulates autophagy through phosphorylation of ULK1. Under nutrient sufficiency, phosphorylates ULK1 at 'Ser-757', disrupting the interaction with AMPK and preventing activation of ULK1. Also prevents autophagy through phosphorylation of the autophagy inhibitor DAP. mTORC1 exerts a feedback control on upstream growth factor signaling that includes phosphorylation and activation of GRB10 a INSR-dependent signaling suppressor. Among other potential targets mTORC1 may phosphorylate CLIP1 and regulate microtubules. As part of the mTORC2 complex MTOR may regulate other cellular processes including survival and organization of the cytoskeleton. Plays a critical role in the phosphorylation at 'Ser-473' of AKT1, a pro-survival effector of phosphoinositide 3-kinase, facilitating its activation by PDK1. mTORC2 may regulate the actin cytoskeleton, through phosphorylation of PRKCA, PXN and activation of the Rho-type guanine nucleotide exchange factors RHOA and RAC1A or RAC1B. mTORC2 also regulates the phosphorylation of SGK1 at 'Ser-422'. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|P42346|MTOR_RAT Serine/threonine-protein kinase mTOR OS=Rattus norvegicus GN=Mtor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 929 bits (2400), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/1528 (37%), Positives = 865/1528 (56%), Gaps = 150/1528 (9%)
Query: 269 RNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFV-TNYLKICMNH 327
R + M ++ +V + VL+ ++ L++++I +LLPR+A F F T YL+ MNH
Sbjct: 360 RCCRDLMEEKFDQVCQWVLKCRSSKNSLIQMTILNLLPRLAAFRPSAFTDTQYLQDTMNH 419
Query: 328 ILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAP------RRGKPSLE 381
+L+ ++ ER + F ALG ++ A+ E YLP + +R A+ P R+ ++
Sbjct: 420 VLSCVKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDIIRAALPPKDFAHKRQKTVQVD 479
Query: 382 A--LACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRL 439
A C+ +ARAMGP ++ ++ LL+ M + GLS L L ++ IP L IQD L
Sbjct: 480 ATVFTCISMLARAMGPGIQQDIKELLEPMLAVGLSPALTAVLYDLSRQIPQLKKDIQDGL 539
Query: 440 LDCISFVLSKS---HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKG 496
L +S VL H + A + + + SD+ A + LAL+TL F F+G
Sbjct: 540 LKMLSLVLMHKPLRHPGMPKGLAHQLASPGLTTLPEASDV---ASITLALRTLGSFEFEG 596
Query: 497 HDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRR 556
H L +F R +L+ E K R +AA C +L+ S +S S++ +
Sbjct: 597 HSLTQFVRHCADHFLNSEHKEIRMEAARTCSRLLTPSIHLISGHAHVVSQTAV------Q 650
Query: 557 LIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVR 616
++ +++ KLL+ + D D +R+ + +SL + FD LAQA+ L A+F ALND+ F++R
Sbjct: 651 VVADVLSKLLVVGITDPDPDIRYCVLASL--DERFDAHLAQAENLQALFVALNDQVFEIR 708
Query: 617 EYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL 676
E AI GRLS NPA+V+P LR+ LIQ+LT LE S + +E+SA++LG L+ N RL
Sbjct: 709 ELAICTVGRLSSMNPAFVMPFLRKMLIQILTELEHSGI-GRIKEQSARMLGHLVSNAPRL 767
Query: 677 IRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE 736
IRPY+ PI KAL+ +L + + N G+I+ VL T+G+LA+V G MR+++ EL +I++
Sbjct: 768 IRPYMEPILKALILKL-KDPDPDPNPGVINNVLATIGELAQVSGLEMRKWVDELFVIIMD 826
Query: 737 ALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLK 796
L D + + KR+VA+ TLGQ+V STGYV+ PY +YP LL +LL L E TRRE ++
Sbjct: 827 MLQDSSLLAKRQVALWTLGQLVASTGYVVEPYRKYPTLLEVLLNFLKTEQNQGTRREAIR 886
Query: 797 VLGIMGALDPHAHKRNQQLSGSHGEVTRAA------------SDSGQHIQPMDEFPMDLW 844
VLG++GALDP+ HK N + + + + + + + M P+D
Sbjct: 887 VLGLLGALDPYKHKVNIGMIDQSRDASAVSLSESKSSQDSSDYSTSEMLVNMGNLPLD-- 944
Query: 845 PSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDL 904
++Y V++ +LMRI RD SL+ +H VV ++ FIFKS+GL CV +LP+V+P
Sbjct: 945 -------EFYPAVSMVALMRIFRDQSLSHHHTMVVQAITFIFKSLGLKCVQFLPQVMPTF 997
Query: 905 FHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGL 964
+ +R CD +++++ +LG LVS V+ HIR Y+ E+ +L+ E W N + +
Sbjct: 998 LNVIRVCDGAIREFLFQQLGMLVSFVKSHIRPYMDEIVTLMREFW------VMNTSIQST 1051
Query: 965 PVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDE 1024
+L L++Q+ +AL EF+ +LP ++P ++V + + +L +++FG LD+
Sbjct: 1052 IIL-LIEQIVVALGGEFKLYLPQLIPHMLRVFMH-DNSQGRIVSIKLLAAIQLFGANLDD 1109
Query: 1025 HMHLLLPALIRLFKV-DAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDE 1083
++HLLLP +++LF + P+ R+AA+ET+ RL + T + S ++H + LD ++ E
Sbjct: 1110 YLHLLLPPIVKLFDAPEVPLPSRKAALETVDRLTESLDFTDYASRIIHPIVRTLD-QSPE 1168
Query: 1084 LRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRR--------RE 1135
LR A+D L L LG+ + IFIP ++K+L++HR+ H+ ++ + R+ + +
Sbjct: 1169 LRSTAMDTLSSLVFQLGKKYQIFIPMVNKVLVRHRINHQRYDVLICRIVKGYTLADEEED 1228
Query: 1136 PLI-----LGSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQASQRSTKE 1190
PLI L S+ L+ PVE + P+ + + + QK A++R +K+
Sbjct: 1229 PLIYQHRMLRSSQGDALASG-PVE--TGPMKKL----HVSTINLQK---AWGAARRVSKD 1278
Query: 1191 DWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLV 1250
DW EW+R LS+ELLK+S SP+LR+C LAQ + R+LF A FVSCWS+LN Q L+
Sbjct: 1279 DWLEWLRRLSLELLKDSSSPSLRSCWALAQAYNPMARDLFNAAFVSCWSELNEDQQDELI 1338
Query: 1251 QSLEMAFSSPNIPPEILATLLNLAEFMEHDEK-PLPI----DIRLLGALAEKCRAFAKAL 1305
+S+E+A +S +I E+ TLLNLAEFMEH +K PLP+ I LLG A KCRA+AKAL
Sbjct: 1339 RSIELALTSQDI-AEVTQTLLNLAEFMEHSDKGPLPLRDDNGIVLLGERAAKCRAYAKAL 1397
Query: 1306 HYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL-DVQLKESWY 1364
HYKE+EF+ + A++E+LI INN+L Q EAA G+L YA K +++++ +WY
Sbjct: 1398 HYKELEFQKGPTP-------AILESLISINNKLQQPEAASGVLEYAMKHFGELEIQATWY 1450
Query: 1365 EKLQRWDDALKAYTNKA-SQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEP 1423
EKL W+DAL AY K + +P E LGRMRCL AL W +L+ C E WT
Sbjct: 1451 EKLHEWEDALVAYDKKMDTNKDDP----ELMLGRMRCLEALGEWGQLHQQCCEKWTLVND 1506
Query: 1424 AARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAV 1483
+ +MA MAA AAW +G+WD M EY T + +G F+RAV
Sbjct: 1507 ETQAKMARMAAAAAWGLGQWDSMEEY-----------------TCMIPRDTHDGAFYRAV 1549
Query: 1484 L------------LVRRGKVL----------ESYERAYSNMVRVQQLSELEEVIDYCTLP 1521
L + + + L ESY RAY MV LSELEEVI Y +P
Sbjct: 1550 LALHQDLFSLAQQCIDKARDLLDAELTAMAGESYSRAYGAMVSCHMLSELEEVIQYKLVP 1609
Query: 1522 VGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRK 1581
RR IIR +W ER+QG +R VE WQ +L VR+LV+ P ED+ TWLK+ASLC K
Sbjct: 1610 -------ERREIIRQIWWERLQGCQRIVEDWQKILMVRSLVVSPHEDMRTWLKYASLCGK 1662
Query: 1582 SGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQT 1641
SGR++ A TLV LL DP ++ PQV YAY+K W + ++ +AF +Q
Sbjct: 1663 SGRLALAHKTLVLLLGVDPSRQLDHPLPTVHPQVTYAYMKNMW---KSARKIDAFQHMQH 1719
Query: 1642 LAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAY 1701
+ Q A +T L+AR +LKLG W+ L G+++ +IP+++ Y
Sbjct: 1720 FVQTMQQQA--QHAIATEDQQHKQELHKLMARCFLKLGEWQLNL-QGINESTIPKVLQYY 1776
Query: 1702 RNATQCATKWGKAWHSWALFNTAVMSHY 1729
AT+ W KAWH+WA+ N + HY
Sbjct: 1777 SAATEHDRSWYKAWHAWAVMNFEAVLHY 1804
|
Serine/threonine protein kinase which is a central regulator of cellular metabolism, growth and survival in response to hormones, growth factors, nutrients, energy and stress signals. Functions as part of 2 structurally and functionally distinct signaling complexes mTORC1 and mTORC2 (mTOR complex 1 and 2). Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. This includes phosphorylation of EIF4EBP1 and release of its inhibition toward the elongation initiation factor 4E (eiF4E). Moreover, phosphorylates and activates RPS6KB1 and RPS6KB2 that promote protein synthesis by modulating the activity of their downstream targets including ribosomal protein S6, eukaryotic translation initiation factor EIF4B and the inhibitor of translation initiation PDCD4. Regulates ribosome synthesis by activating RNA polymerase III-dependent transcription through phosphorylation and inhibition of MAF1 a RNA polymerase III-repressor. In parallel to protein synthesis, also regulates lipid synthesis through SREBF1/SREBP1 and LPIN1. To maintain energy homeostasis mTORC1 may also regulate mitochondrial biogenesis through regulation of PPARGC1A. mTORC1 also negatively regulates autophagy through phosphorylation of ULK1. Under nutrient sufficiency, phosphorylates ULK1 at 'Ser-757', disrupting the interaction with AMPK and preventing activation of ULK1. Also prevents autophagy through phosphorylation of the autophagy inhibitor DAP. mTORC1 exerts a feedback control on upstream growth factor signaling that includes phosphorylation and activation of GRB10 a INSR-dependent signaling suppressor. Among other potential targets mTORC1 may phosphorylate CLIP1 and regulate microtubules. As part of the mTORC2 complex MTOR may regulate other cellular processes including survival and organization of the cytoskeleton. Plays a critical role in the phosphorylation at 'Ser-473' of AKT1, a pro-survival effector of phosphoinositide 3-kinase, facilitating its activation by PDK1. mTORC2 may regulate the actin cytoskeleton, through phosphorylation of PRKCA, PXN and activation of the Rho-type guanine nucleotide exchange factors RHOA and RAC1A or RAC1B. mTORC2 also regulates the phosphorylation of SGK1 at 'Ser-421'. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1880 | ||||||
| 224060923 | 2483 | predicted protein [Populus trichocarpa] | 0.996 | 0.754 | 0.862 | 0.0 | |
| 224105777 | 2482 | predicted protein [Populus trichocarpa] | 0.996 | 0.755 | 0.856 | 0.0 | |
| 359475536 | 2469 | PREDICTED: serine/threonine-protein kina | 0.994 | 0.756 | 0.845 | 0.0 | |
| 449479024 | 2470 | PREDICTED: LOW QUALITY PROTEIN: serine/t | 0.994 | 0.757 | 0.861 | 0.0 | |
| 356539702 | 2468 | PREDICTED: serine/threonine-protein kina | 0.993 | 0.756 | 0.848 | 0.0 | |
| 356497486 | 2468 | PREDICTED: serine/threonine-protein kina | 0.993 | 0.756 | 0.848 | 0.0 | |
| 359475538 | 2442 | PREDICTED: serine/threonine-protein kina | 0.979 | 0.754 | 0.832 | 0.0 | |
| 356539704 | 2441 | PREDICTED: serine/threonine-protein kina | 0.979 | 0.754 | 0.837 | 0.0 | |
| 356497488 | 2441 | PREDICTED: serine/threonine-protein kina | 0.979 | 0.754 | 0.838 | 0.0 | |
| 297852694 | 2482 | hypothetical protein ARALYDRAFT_474140 [ | 0.995 | 0.753 | 0.817 | 0.0 |
| >gi|224060923|ref|XP_002300288.1| predicted protein [Populus trichocarpa] gi|222847546|gb|EEE85093.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3324 bits (8619), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1649/1912 (86%), Positives = 1753/1912 (91%), Gaps = 38/1912 (1%)
Query: 1 MASTSQSLRY-IGPPAPGAGGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLG 59
MASTSQSLR+ +GP GGGS DALNRILADLCT GNPKEGA+LALRKH+EE+ARD+
Sbjct: 1 MASTSQSLRFLVGPATTAPGGGSFDALNRILADLCTRGNPKEGATLALRKHLEEEARDIS 60
Query: 60 GEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVF 119
GEAF RFMD LY+RIS LLESN+ AENLGALRA DELIDVALGENASKVSKF+ YMR+VF
Sbjct: 61 GEAFPRFMDHLYERISSLLESNEVAENLGALRATDELIDVALGENASKVSKFAIYMRSVF 120
Query: 120 EVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKE 179
EVKRD E+L AS+VLGHLARAGGAMTADEVEFQVKMALDWL D+ E+R FAAVLILKE
Sbjct: 121 EVKRDPEVLTHASRVLGHLARAGGAMTADEVEFQVKMALDWLHNDKAEFRLFAAVLILKE 180
Query: 180 MAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYR 239
+AENASTVFNVHV EFVDAIWVALR PTLA+RERAVEALRACLRVIEKRETRWRVQWYYR
Sbjct: 181 VAENASTVFNVHVPEFVDAIWVALRHPTLAIRERAVEALRACLRVIEKRETRWRVQWYYR 240
Query: 240 MFEATQDGLGRNAPVHSIHGSLLAVGELLR-NTGEFMMSRYREVAEIVLRYLEHRDRLVR 298
MFEATQDGLG+NAPVHSIHGSLLAVGELLR NTGEFMMSRYREVA+IVLRYLEHRDRLVR
Sbjct: 241 MFEATQDGLGKNAPVHSIHGSLLAVGELLRLNTGEFMMSRYREVADIVLRYLEHRDRLVR 300
Query: 299 LSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFH 358
LSITSLLPRIAHFLRDRFVTNYL+ICMNHIL VLRIPAER SGFIALGEMAGALDGEL H
Sbjct: 301 LSITSLLPRIAHFLRDRFVTNYLEICMNHILAVLRIPAERGSGFIALGEMAGALDGELEH 360
Query: 359 YLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLV 418
YLPTIT+HLR+AIAPRR KPSLEALACVGNIA+AM MEP+VR LLD+M SAGLS TLV
Sbjct: 361 YLPTITAHLRDAIAPRRAKPSLEALACVGNIAKAMKTAMEPYVRSLLDVMLSAGLSPTLV 420
Query: 419 DALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNG 478
+ALEQI+ SIPSLLPTIQ+RLLDCIS LSKSH+SQ+R A +RG++ N PQQVSDL+G
Sbjct: 421 EALEQISDSIPSLLPTIQERLLDCISLALSKSHFSQSRAAIHTVRGSMTNAPQQVSDLSG 480
Query: 479 SAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVS 538
SA VQLALQTLARFNFKGH+LLEFAR+SVV+YLDDED ATRKDAALCCCKLVANSFS +
Sbjct: 481 SALVQLALQTLARFNFKGHELLEFARESVVVYLDDEDGATRKDAALCCCKLVANSFSAMV 540
Query: 539 FTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQA 598
TQ G+ RSNRTGGKR RL+EELVEKLLIAAVADADVTVR SIFSSL+GNRGFDDFLAQA
Sbjct: 541 STQVGSGRSNRTGGKRWRLVEELVEKLLIAAVADADVTVRQSIFSSLHGNRGFDDFLAQA 600
Query: 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKC 658
D LSA+FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYL+QS ADNKC
Sbjct: 601 DILSAVFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLKQS-ADNKC 659
Query: 659 REESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARV 718
REESAKLLGCLIRNCE+L+ PYIAP+HKALVARLLEGTG+NANNGIISGVLVTVGDLARV
Sbjct: 660 REESAKLLGCLIRNCEQLVLPYIAPVHKALVARLLEGTGVNANNGIISGVLVTVGDLARV 719
Query: 719 GGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLL 778
GGF MRQYISELMPLIVEALLDGAA TKREVAV+TLGQVVQSTGYVITPY EYPQLLGLL
Sbjct: 720 GGFAMRQYISELMPLIVEALLDGAAATKREVAVATLGQVVQSTGYVITPYTEYPQLLGLL 779
Query: 779 LKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ-LSGSHGEVTRAASDSGQHIQPMD 837
LK+LNGEL W+TRREVLKVLGIMGALDPH HKRNQQ L GSHGEV RAASDSGQHI MD
Sbjct: 780 LKLLNGELGWTTRREVLKVLGIMGALDPHVHKRNQQNLPGSHGEVARAASDSGQHIPSMD 839
Query: 838 EFPMDLWPSFATSEDYYSTV-AINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY 896
E PMDLWPSFATSEDYYSTV AINSLMRILRDPSLASYHQ+VVGSLMFIFKSMGLGCVPY
Sbjct: 840 ELPMDLWPSFATSEDYYSTVVAINSLMRILRDPSLASYHQRVVGSLMFIFKSMGLGCVPY 899
Query: 897 LPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPA 956
LPKVLPDLFHTVRTCDD LKD+ITWKLGTLVSIVRQHIRKYL EL SLISELWSSFSLPA
Sbjct: 900 LPKVLPDLFHTVRTCDDCLKDFITWKLGTLVSIVRQHIRKYLPELLSLISELWSSFSLPA 959
Query: 957 TNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLE 1016
R RG PVLHLV+QLCLALNDEFR HLPVILPCC+QVLSDAERCNDY+YVLDILHTLE
Sbjct: 960 PIRPPRGFPVLHLVEQLCLALNDEFRKHLPVILPCCLQVLSDAERCNDYSYVLDILHTLE 1019
Query: 1017 VFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLV 1076
VFGGTLDEHMHLLLPALIRLFKVDA VDIRRAAI+TLTRLIP VQVTGHIS+LVHHLKLV
Sbjct: 1020 VFGGTLDEHMHLLLPALIRLFKVDASVDIRRAAIKTLTRLIPCVQVTGHISALVHHLKLV 1079
Query: 1077 LDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREP 1136
LDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGR RRREP
Sbjct: 1080 LDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRFRRREP 1139
Query: 1137 LILGSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQ-----------ASQ 1185
+ILGSTAAQ+LSRR+PVEVISDPLND+++DPYEDG D Q+ LRGHQ ASQ
Sbjct: 1140 IILGSTAAQRLSRRLPVEVISDPLNDMENDPYEDGIDMQRHLRGHQVNDGRLRTAGEASQ 1199
Query: 1186 RSTKEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATS 1245
RST+EDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCW+QLN S
Sbjct: 1200 RSTREDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWAQLNEAS 1259
Query: 1246 QKHLVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKAL 1305
QKHLV+SLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALA+KCRAFAKAL
Sbjct: 1260 QKHLVRSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALADKCRAFAKAL 1319
Query: 1306 HYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYE 1365
HYKEMEFEG+RS +MDANPVAVVE LIHINNQLHQHEAAVGILTYAQ+ LDVQLKESWYE
Sbjct: 1320 HYKEMEFEGSRSKKMDANPVAVVETLIHINNQLHQHEAAVGILTYAQQLLDVQLKESWYE 1379
Query: 1366 KLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAA 1425
KLQRWDDALKAYT KASQ S+PH+VLEATLGRMRCLAALARWEELNNLCKEYWTPAEP+A
Sbjct: 1380 KLQRWDDALKAYTVKASQVSSPHLVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPSA 1439
Query: 1426 RLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLL 1485
RLEMAPMAA+AAWNMGEWDQMAEYVSRLDDGDE+K+RGLGNTAA+GDGSSNGTFFRAVLL
Sbjct: 1440 RLEMAPMAASAAWNMGEWDQMAEYVSRLDDGDETKIRGLGNTAASGDGSSNGTFFRAVLL 1499
Query: 1486 VRRGK----------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVG 1523
VR+ K VLESYERAY NMVRVQQLSELEEVIDYCTLP G
Sbjct: 1500 VRKEKYDEAREYVERARKCLATELAALVLESYERAYVNMVRVQQLSELEEVIDYCTLPAG 1559
Query: 1524 NPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSG 1583
NPVAEGRRA+IRNMWTERI+G KRNVEVWQ LLAVRALVLPPTED++ WLKFASLCRKS
Sbjct: 1560 NPVAEGRRALIRNMWTERIRGAKRNVEVWQLLLAVRALVLPPTEDIDNWLKFASLCRKSN 1619
Query: 1584 RISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643
RISQARSTLVKLLQYDPETS ENVRYHGPPQVM AYLKYQWSLGED KRKEAFARLQ LA
Sbjct: 1620 RISQARSTLVKLLQYDPETSPENVRYHGPPQVMLAYLKYQWSLGEDHKRKEAFARLQDLA 1679
Query: 1644 MELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRN 1703
+ELSS P +QS SL +T NV L+ARVY LG+W+ L PGLDD+SI EI+ ++RN
Sbjct: 1680 IELSSAPNMQSITPISLMGSTGQNVHLLARVYRTLGAWQWTLSPGLDDDSIQEILLSFRN 1739
Query: 1704 ATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVD 1763
ATQ AT+WGKAWHSWALFNTAVMS YTL+GLP+VA QFVV AVTGYFHSIACAA+AKGVD
Sbjct: 1740 ATQYATEWGKAWHSWALFNTAVMSQYTLQGLPNVASQFVVSAVTGYFHSIACAANAKGVD 1799
Query: 1764 DSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELI 1823
DSLQDILRLLTLWFNHGA+ EVQ+ALQKGF+HVNINTWLVVLPQIIARIHSN AVRELI
Sbjct: 1800 DSLQDILRLLTLWFNHGASAEVQMALQKGFSHVNINTWLVVLPQIIARIHSNTHAVRELI 1859
Query: 1824 QSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGVLVDQS 1875
QSLLVRIGQSHPQALMYPLLVACKSISNLR+AAA+EVV+KVR+HSGVLVDQ+
Sbjct: 1860 QSLLVRIGQSHPQALMYPLLVACKSISNLRKAAAEEVVNKVRKHSGVLVDQA 1911
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224105777|ref|XP_002313929.1| predicted protein [Populus trichocarpa] gi|222850337|gb|EEE87884.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3318 bits (8604), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1637/1911 (85%), Positives = 1739/1911 (90%), Gaps = 37/1911 (1%)
Query: 1 MASTSQSLRYIGPPAPGAGGG-SLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLG 59
MASTSQSLR++ PA GG S DALNRILADLC GNPKEGA+LALRKH+EE+ARDL
Sbjct: 1 MASTSQSLRFLAGPATTGPGGGSFDALNRILADLCIRGNPKEGATLALRKHLEEEARDLS 60
Query: 60 GEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVF 119
GE+F RFMD LY+RIS LLE+N+ AENLGALRAIDELID+ LGENASKVSKF+ YMR+VF
Sbjct: 61 GESFPRFMDHLYERISSLLETNEVAENLGALRAIDELIDIELGENASKVSKFAVYMRSVF 120
Query: 120 EVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKE 179
EVKRD ++L LAS+VLGHLARAGGAMTADEV+FQVKMAL WLR D+ E+R FAAVLILKE
Sbjct: 121 EVKRDLDVLTLASRVLGHLARAGGAMTADEVKFQVKMALGWLRKDKAEFRLFAAVLILKE 180
Query: 180 MAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYR 239
+AENASTVFNVHV EFV+AIWVALR PTLA+RE+AVEALRACLRVIEKRETRWRVQWYYR
Sbjct: 181 IAENASTVFNVHVTEFVEAIWVALRHPTLAIREKAVEALRACLRVIEKRETRWRVQWYYR 240
Query: 240 MFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRL 299
MFEATQDGLG+NAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRL
Sbjct: 241 MFEATQDGLGKNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRL 300
Query: 300 SITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHY 359
SITSLLPRIAHFLRDRFVTNYL+ICMNHIL VLRIPAER SGFIALGEMAGALDGEL HY
Sbjct: 301 SITSLLPRIAHFLRDRFVTNYLEICMNHILAVLRIPAERGSGFIALGEMAGALDGELVHY 360
Query: 360 LPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVD 419
LPTIT+HLR+AIAPRR KPSLEAL CVGNIA+AMGP MEP VR LLD+MFSAGLS+TLVD
Sbjct: 361 LPTITAHLRDAIAPRRAKPSLEALVCVGNIAKAMGPAMEPFVRSLLDVMFSAGLSSTLVD 420
Query: 420 ALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGS 479
ALEQI+VSIPSLLPTIQ+RLLDCIS VLSKSHYSQ R A P+RG PQQVSDL+GS
Sbjct: 421 ALEQISVSIPSLLPTIQERLLDCISLVLSKSHYSQPRTAVPPVRGGAGIAPQQVSDLSGS 480
Query: 480 APVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSF 539
A VQL LQTLARFNFKGH+LLEFAR+SV++YLDDED ATRKDAALCCCKLVA+SFSG++
Sbjct: 481 ALVQLTLQTLARFNFKGHELLEFARESVLVYLDDEDGATRKDAALCCCKLVADSFSGMTS 540
Query: 540 TQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQAD 599
TQFG+ RSNR GGKR RL+EELVEKLLIAAVADAD+TVR SIFSSL+GNRGFD+FLAQAD
Sbjct: 541 TQFGSIRSNRNGGKRWRLVEELVEKLLIAAVADADITVRQSIFSSLHGNRGFDNFLAQAD 600
Query: 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCR 659
L+A+FAALNDEDFDVREYAIS+AGRLSEKNPAYVLPALRRHLIQLLTYL+Q SADNKCR
Sbjct: 601 SLTAVFAALNDEDFDVREYAISLAGRLSEKNPAYVLPALRRHLIQLLTYLKQ-SADNKCR 659
Query: 660 EESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG 719
EESAKLLGCLIRNCERL+ PYIAPIHKALVARL EGTG+NANNGIISGVLVTVGDLARVG
Sbjct: 660 EESAKLLGCLIRNCERLVLPYIAPIHKALVARLNEGTGVNANNGIISGVLVTVGDLARVG 719
Query: 720 GFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLL 779
GF MRQYISELMPLIVEALLDGAA TKREVAV+TLGQVVQSTGYVITPYNEYPQLLGLLL
Sbjct: 720 GFAMRQYISELMPLIVEALLDGAAATKREVAVATLGQVVQSTGYVITPYNEYPQLLGLLL 779
Query: 780 KMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ-LSGSHGEVTRAASDSGQHIQPMDE 838
K LNGELVWSTRREVLKVLGIMGALDP HKRNQQ L GSHGEV RAASDSGQHI MDE
Sbjct: 780 KFLNGELVWSTRREVLKVLGIMGALDPLVHKRNQQSLPGSHGEVARAASDSGQHIPSMDE 839
Query: 839 FPMDLWPSFATSEDYYST-VAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYL 897
PMD WPSFATSEDYY T VAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY+
Sbjct: 840 LPMDFWPSFATSEDYYPTVVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYI 899
Query: 898 PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPAT 957
PKVLPDLFHTVRTCDDYLKD+I WKLGTLVSIVRQHIRKYL EL SLISELWSSFSLPAT
Sbjct: 900 PKVLPDLFHTVRTCDDYLKDFIMWKLGTLVSIVRQHIRKYLPELLSLISELWSSFSLPAT 959
Query: 958 NRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEV 1017
R RG PVLHLV+QLCLALNDEFR HLPVILP CIQVLSDAERCNDYTY LDILHTLEV
Sbjct: 960 IRPSRGFPVLHLVEQLCLALNDEFRRHLPVILPSCIQVLSDAERCNDYTYALDILHTLEV 1019
Query: 1018 FGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVL 1077
FGGTLDEHMHLLLPALIRLFKVDA VDIRRAAI+TLTRLIP VQV GHIS+LVHHLKLVL
Sbjct: 1020 FGGTLDEHMHLLLPALIRLFKVDASVDIRRAAIKTLTRLIPCVQVIGHISALVHHLKLVL 1079
Query: 1078 DGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPL 1137
DGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRL+HKEFEEIEGRLRRREPL
Sbjct: 1080 DGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLQHKEFEEIEGRLRRREPL 1139
Query: 1138 ILGSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQ-----------ASQR 1186
ILGSTAAQ+LSRR+PVEVISDPLND+++DPY+DG D Q+ L GHQ ASQR
Sbjct: 1140 ILGSTAAQRLSRRLPVEVISDPLNDMENDPYDDGVDMQRHLSGHQVNDSQLRTAGEASQR 1199
Query: 1187 STKEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQ 1246
STKEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPF+GRELFAAGFVSCW+QLN SQ
Sbjct: 1200 STKEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFIGRELFAAGFVSCWAQLNEASQ 1259
Query: 1247 KHLVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALH 1306
KHLV+SLEMAFSS NIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALA+KC AFAKALH
Sbjct: 1260 KHLVRSLEMAFSSQNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALADKCHAFAKALH 1319
Query: 1307 YKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEK 1366
YKEMEFEG+ S +MDANPVAVVE LIHINNQLHQHEAAVGILTYAQ+ LDVQLKESWYEK
Sbjct: 1320 YKEMEFEGSLSKKMDANPVAVVETLIHINNQLHQHEAAVGILTYAQQNLDVQLKESWYEK 1379
Query: 1367 LQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAAR 1426
LQRWDDALKAYT KASQ S+PH+VLEATLGRMRCLA LARWEELNNLCKEYWTPAEP+AR
Sbjct: 1380 LQRWDDALKAYTVKASQVSSPHLVLEATLGRMRCLAQLARWEELNNLCKEYWTPAEPSAR 1439
Query: 1427 LEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLV 1486
LEMAPMAA+AAWNMGEWDQMAEYVSRLDDGDE+KLRGLGNTAA+GDGSSNGTFFRAVLLV
Sbjct: 1440 LEMAPMAASAAWNMGEWDQMAEYVSRLDDGDETKLRGLGNTAASGDGSSNGTFFRAVLLV 1499
Query: 1487 RRGK----------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGN 1524
RRGK VLESYERAY NM+RVQQLSELEEVIDY TLPVGN
Sbjct: 1500 RRGKYDEAGEYVERARKCLATELAALVLESYERAYDNMIRVQQLSELEEVIDYYTLPVGN 1559
Query: 1525 PVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGR 1584
PVAEGRRA+IRNMWTERIQG KRNVEVWQALLAVRALVLPP ED++ WLKFASLCRKS R
Sbjct: 1560 PVAEGRRALIRNMWTERIQGAKRNVEVWQALLAVRALVLPPIEDIDNWLKFASLCRKSNR 1619
Query: 1585 ISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644
IS ARSTLVKLLQYDPETS EN+RYHGPPQVM AYLKYQWSLGED KRKEAF+RLQ LA+
Sbjct: 1620 ISHARSTLVKLLQYDPETSPENMRYHGPPQVMLAYLKYQWSLGEDHKRKEAFSRLQDLAI 1679
Query: 1645 ELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNA 1704
ELSS P +QS T L +T NV L+ARVY LG W+ AL PGLDD+SI EI++++ NA
Sbjct: 1680 ELSSTPNMQSIIPTGLMGSTGQNVHLLARVYRILGIWQWALSPGLDDDSIQEILSSFSNA 1739
Query: 1705 TQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDD 1764
TQ TKWGKAWHSWALFNT VMSHYTLRG P+VA QFVV AVTGYFHSIA AA+AKGVD
Sbjct: 1740 TQYETKWGKAWHSWALFNTGVMSHYTLRGFPNVASQFVVAAVTGYFHSIAYAANAKGVDG 1799
Query: 1765 SLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQ 1824
SLQDILRLLTLWFNHG T EVQ+ALQKGFAHVNINTWL VLPQIIARIH NN A+RELIQ
Sbjct: 1800 SLQDILRLLTLWFNHGDTAEVQMALQKGFAHVNINTWLAVLPQIIARIHLNNHALRELIQ 1859
Query: 1825 SLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGVLVDQS 1875
SLLVRIGQSHPQALMYPLLVACKSISNLR+AAA+EVV+KVRQHSGVLVDQ+
Sbjct: 1860 SLLVRIGQSHPQALMYPLLVACKSISNLRKAAAEEVVNKVRQHSGVLVDQA 1910
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475536|ref|XP_002275591.2| PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3289 bits (8528), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1615/1909 (84%), Positives = 1735/1909 (90%), Gaps = 40/1909 (2%)
Query: 1 MASTSQSLRYIGPPAPGAGGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGG 60
MAST+QS+R+ P A G SLDALNRILADLC G PK+GA+LAL+ H+EE+ARDL G
Sbjct: 1 MASTAQSIRFGAP----AAGSSLDALNRILADLCARGPPKDGAALALKIHLEEEARDLSG 56
Query: 61 EAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120
EAFSRFMDQLYDRIS LL+SND AEN+GALRAIDELIDVALGE+ASKVSKFS Y+RTVFE
Sbjct: 57 EAFSRFMDQLYDRISNLLDSNDVAENMGALRAIDELIDVALGESASKVSKFSGYVRTVFE 116
Query: 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180
KRDR++L+LAS VLGHLARAGGAMTADEVE QV+ AL+WLRG+R+EYRRFAAVLILKEM
Sbjct: 117 AKRDRDVLILASTVLGHLARAGGAMTADEVECQVQNALEWLRGERIEYRRFAAVLILKEM 176
Query: 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240
AENASTVFNVHV EFVDAIWVALRDPTL +RERAVEALRACLRVIEKRETRWRVQWYYRM
Sbjct: 177 AENASTVFNVHVPEFVDAIWVALRDPTLPIRERAVEALRACLRVIEKRETRWRVQWYYRM 236
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVA+IV+ YLEH+DRLVRLS
Sbjct: 237 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVADIVITYLEHKDRLVRLS 296
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYL 360
ITSLLPRIAHFLRDRFVTNYL ICMNHIL VLR PAERDSGFIALGEMAGALDGEL HY+
Sbjct: 297 ITSLLPRIAHFLRDRFVTNYLNICMNHILAVLRQPAERDSGFIALGEMAGALDGELVHYM 356
Query: 361 PTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA 420
PTI SHLR+AIAPRRG+PSL+AL CVG+IA+AMG VMEP+VR LLD+MF GLS L++A
Sbjct: 357 PTIISHLRDAIAPRRGRPSLDALTCVGSIAKAMGSVMEPYVRSLLDVMFFPGLSHALIEA 416
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480
LEQIT SIPSLLPTIQDRLLDCIS LS+SHY ARPA RG+ +N QQV D + A
Sbjct: 417 LEQITASIPSLLPTIQDRLLDCISIALSRSHYPLARPAVAMARGSTVNTAQQVLDFSSPA 476
Query: 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFT 540
VQL+LQTLA FNFKGH+LLEFAR+SVV+YLDDED ATRKDAALCCC L+ANSFSG +
Sbjct: 477 LVQLSLQTLAHFNFKGHELLEFARESVVVYLDDEDGATRKDAALCCCSLIANSFSGTTCP 536
Query: 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADC 600
QF +SRSNRTGGKRRRL+EE+VEKLLIAA+ADADVTVR SIF SL+ N GFD+FLAQAD
Sbjct: 537 QFSSSRSNRTGGKRRRLVEEIVEKLLIAAIADADVTVRRSIFLSLHENGGFDEFLAQADS 596
Query: 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE 660
LSA+FAALNDEDFDVREYAISV+GRLSEKNPAYVLPALRRHLIQLLTYLEQ SAD+KCRE
Sbjct: 597 LSAVFAALNDEDFDVREYAISVSGRLSEKNPAYVLPALRRHLIQLLTYLEQ-SADSKCRE 655
Query: 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
ESAKLLGCLIRNCERLI PYIAPIHKALVA+L EG+G+NANNGIISGVLVTVGDLARVGG
Sbjct: 656 ESAKLLGCLIRNCERLILPYIAPIHKALVAKLAEGSGVNANNGIISGVLVTVGDLARVGG 715
Query: 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780
MR +++LMPLIVEAL+DGAAVTKREVAV+TLGQVVQSTGYVI PYN YPQLLGLLLK
Sbjct: 716 SAMRDNVTDLMPLIVEALMDGAAVTKREVAVATLGQVVQSTGYVIAPYNAYPQLLGLLLK 775
Query: 781 MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ-LSGSHGEVTRAASDSGQHIQPMDEF 839
+LNGEL W+TRREVLKVLGIMGALDPH HKRNQQ L G HGEV R ASD+GQHI+ MDE
Sbjct: 776 LLNGELAWTTRREVLKVLGIMGALDPHVHKRNQQCLPGLHGEVARPASDTGQHIRSMDEL 835
Query: 840 PMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPK 899
PMDLWPSFATSEDYYSTVAINSLMRILRD SL+SYHQKVVGSLMFIFKSMGLGCVPYLPK
Sbjct: 836 PMDLWPSFATSEDYYSTVAINSLMRILRDASLSSYHQKVVGSLMFIFKSMGLGCVPYLPK 895
Query: 900 VLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR 959
VLPDLF TVRTC+D LK++ITWKLGTLVSIVRQHIRKYL EL LISELW SFSLP++NR
Sbjct: 896 VLPDLFLTVRTCEDGLKEFITWKLGTLVSIVRQHIRKYLPELLLLISELWPSFSLPSSNR 955
Query: 960 TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG 1019
GLP+LHLV+QLCLALNDEFRT+LP+ILP CIQVLSDAERCNDYTYVLDILHTLEVFG
Sbjct: 956 PVHGLPILHLVEQLCLALNDEFRTYLPLILPSCIQVLSDAERCNDYTYVLDILHTLEVFG 1015
Query: 1020 GTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
GTLDEHMHLLLPALIRLFKVDA V IRRAA +TLTRLIPRVQVTGHIS+LVHHLKLVLDG
Sbjct: 1016 GTLDEHMHLLLPALIRLFKVDASVAIRRAAFKTLTRLIPRVQVTGHISALVHHLKLVLDG 1075
Query: 1080 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL 1139
KNDELRKDAVDALCCLAHALG DFTIFIPSIHKLL+KHRLRHKEFEEIEGRL+RREPLIL
Sbjct: 1076 KNDELRKDAVDALCCLAHALGGDFTIFIPSIHKLLMKHRLRHKEFEEIEGRLQRREPLIL 1135
Query: 1140 GSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQ-----------ASQRST 1188
GSTAAQ+L R PVEV SDPLNDV++DPYEDG+DAQ+Q+RGHQ ASQRST
Sbjct: 1136 GSTAAQRLISRFPVEVTSDPLNDVENDPYEDGSDAQRQIRGHQVNDGRLRTAGEASQRST 1195
Query: 1189 KEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKH 1248
KEDWAEWMRH SIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCW+QLN TSQK
Sbjct: 1196 KEDWAEWMRHFSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWAQLNDTSQKQ 1255
Query: 1249 LVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1308
LV+SLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK
Sbjct: 1256 LVRSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1315
Query: 1309 EMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQ 1368
EMEFEGARS +MDANPVAVVEALIHINNQLHQHEAAVGILTYAQ+ LDVQLKESWYEKLQ
Sbjct: 1316 EMEFEGARSKKMDANPVAVVEALIHINNQLHQHEAAVGILTYAQQNLDVQLKESWYEKLQ 1375
Query: 1369 RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE 1428
RWDDALKAYT KASQAS PH+VLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE
Sbjct: 1376 RWDDALKAYTAKASQASTPHLVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE 1435
Query: 1429 MAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRR 1488
MAPMAANAAWNMGEWDQMA+YVSRLDDGDE+KLR LGNT A+GDGSSNGTFFRAVLLVRR
Sbjct: 1436 MAPMAANAAWNMGEWDQMADYVSRLDDGDETKLRVLGNTTASGDGSSNGTFFRAVLLVRR 1495
Query: 1489 GK----------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPV 1526
GK VLESY+RAYSNMVRVQQLSELEEVIDYCTLPVGNPV
Sbjct: 1496 GKYDEAREFVERARKCLATELAALVLESYDRAYSNMVRVQQLSELEEVIDYCTLPVGNPV 1555
Query: 1527 AEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRIS 1586
AEGRRA+IRNMWTERIQG KRNVEVWQ LLAVRALVLPP ED+E WLKF+ LCRK+GRIS
Sbjct: 1556 AEGRRALIRNMWTERIQGAKRNVEVWQVLLAVRALVLPPIEDIENWLKFSYLCRKNGRIS 1615
Query: 1587 QARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646
QARSTL+KLLQYDPETS ENVRYHGPPQVM AYLKYQWSLGEDLKRKEAF RLQ LA+EL
Sbjct: 1616 QARSTLIKLLQYDPETSPENVRYHGPPQVMVAYLKYQWSLGEDLKRKEAFGRLQNLAIEL 1675
Query: 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ 1706
SS IQSA ST L + +S +VPL+ARVY +LG+W+ AL P LD++SI EI++A+RNATQ
Sbjct: 1676 SSAN-IQSATSTGLMSTSSVSVPLLARVYRRLGTWQWALSPALDEDSIQEILSAFRNATQ 1734
Query: 1707 CATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSL 1766
CATKW KAWHSWALFNTAVMSHYTLRG P++A QFVV AVTGYFHSIA AA+AKGVDDSL
Sbjct: 1735 CATKWAKAWHSWALFNTAVMSHYTLRGFPNIAAQFVVAAVTGYFHSIAFAANAKGVDDSL 1794
Query: 1767 QDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSL 1826
QDILRLLTLWFNHGAT EVQ+AL KGF++VNI+TWLVVLPQIIARIHSNN AVRELIQSL
Sbjct: 1795 QDILRLLTLWFNHGATAEVQMALHKGFSYVNIDTWLVVLPQIIARIHSNNHAVRELIQSL 1854
Query: 1827 LVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGVLVDQS 1875
LVRIG+SHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSG LVDQ+
Sbjct: 1855 LVRIGESHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGTLVDQA 1903
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449479024|ref|XP_004155484.1| PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase TOR-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3267 bits (8471), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1644/1909 (86%), Positives = 1744/1909 (91%), Gaps = 39/1909 (2%)
Query: 1 MASTSQSLRYIGPPAPGAGGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGG 60
MA++ QSLR + GG+ D+LNRIL+DLCT G+PKEGA AL+KHIEE ARDL G
Sbjct: 1 MATSGQSLR---SSSAATSGGNFDSLNRILSDLCTRGHPKEGAPSALKKHIEEAARDLNG 57
Query: 61 EAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120
EAFSRFMDQLYDRIS LLESND AENLGALRAIDELIDVALGENASKVSKFSNY+R+VFE
Sbjct: 58 EAFSRFMDQLYDRISTLLESNDVAENLGALRAIDELIDVALGENASKVSKFSNYIRSVFE 117
Query: 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180
+KRD EILVLAS+VLGHLARAGGAMTADEVE QVK+ALDWLRG+R+EYRRFAAVLILKEM
Sbjct: 118 LKRDPEILVLASRVLGHLARAGGAMTADEVEHQVKIALDWLRGERIEYRRFAAVLILKEM 177
Query: 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240
AENASTVFNVHV EFVDAIWVALRDP LAVRERAVEALRACLRVIEKRETRWRVQWYYRM
Sbjct: 178 AENASTVFNVHVPEFVDAIWVALRDPQLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 237
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
FEATQDGLG+NAPVHSIHGSLLAVGELLRNTGEFMMSRYREVA+IVLRYLEHRDRLVRLS
Sbjct: 238 FEATQDGLGKNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVADIVLRYLEHRDRLVRLS 297
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYL 360
ITSLLPRIAHFLRDRFVTNYL ICMNHILTVLR PAER SGFIALGEMAGALDGEL +YL
Sbjct: 298 ITSLLPRIAHFLRDRFVTNYLTICMNHILTVLRTPAERASGFIALGEMAGALDGELKYYL 357
Query: 361 PTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA 420
PTIT+HLR+AIAPRRG+PSLEALACVG+IA+AMGP ME HVRGLLD+MFSAGLS TLV++
Sbjct: 358 PTITNHLRDAIAPRRGRPSLEALACVGSIAKAMGPAMESHVRGLLDVMFSAGLSHTLVES 417
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480
LEQIT SIP LL +IQ+RLLD IS VLSKSH Q R AA R NVM +PQ VSDL GS+
Sbjct: 418 LEQITTSIPILLSSIQERLLDSISMVLSKSHSPQGRAAAVVGRANVMTVPQPVSDLCGSS 477
Query: 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFT 540
VQLALQTLARFNFKGHDLLEFAR+SVV+YLDDED ATRKDAALCCC+LV+NSFS ++ T
Sbjct: 478 LVQLALQTLARFNFKGHDLLEFARESVVVYLDDEDGATRKDAALCCCRLVSNSFSVMACT 537
Query: 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADC 600
QFG SRS+R GG+RRRL+EELVEKLLIAAVADADV VR+SIF SL+GNRGFDDF+AQAD
Sbjct: 538 QFGTSRSSRAGGRRRRLVEELVEKLLIAAVADADVAVRNSIFVSLHGNRGFDDFIAQADS 597
Query: 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE 660
LSA+FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYL+Q SADNKCRE
Sbjct: 598 LSAVFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLDQ-SADNKCRE 656
Query: 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
ESAKLLGCLIRNCERLI PYIAP+HKALVARL EGTG+NANNGII+GVLVTVGDLARVGG
Sbjct: 657 ESAKLLGCLIRNCERLILPYIAPVHKALVARLSEGTGVNANNGIITGVLVTVGDLARVGG 716
Query: 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780
F MRQY+ ELMPLIVEALLDGAAV KREVAVSTLGQVVQSTGYVITPYNEYP LLGLLLK
Sbjct: 717 FAMRQYLPELMPLIVEALLDGAAVAKREVAVSTLGQVVQSTGYVITPYNEYPLLLGLLLK 776
Query: 781 MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQ-QLSGSHGEVTRAASDSGQHIQPMDEF 839
+LNGEL WSTRREVLKVLGIMGALDPH HKRNQ L GSHGEVTRAASDSGQHIQ +DE
Sbjct: 777 LLNGELAWSTRREVLKVLGIMGALDPHVHKRNQLSLPGSHGEVTRAASDSGQHIQSVDEL 836
Query: 840 PMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPK 899
PM+LWPSFATSEDYYSTVAI+SL+RILRDPSLASYH KVVGSLMFIFKSMGLG VPYLPK
Sbjct: 837 PMELWPSFATSEDYYSTVAISSLLRILRDPSLASYHLKVVGSLMFIFKSMGLGSVPYLPK 896
Query: 900 VLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR 959
VLPDLFHTV TCDD LKD+ITWKLGTLVSIVRQHIRKYL EL SLISELWSSF+ P+T+R
Sbjct: 897 VLPDLFHTVSTCDDTLKDFITWKLGTLVSIVRQHIRKYLPELLSLISELWSSFNFPSTSR 956
Query: 960 TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG 1019
G PVLHLV+QLCLALNDEFR L +ILPCCIQVLSDAERCNDYTYVLDILHTLEVFG
Sbjct: 957 PPLGYPVLHLVEQLCLALNDEFRMILHIILPCCIQVLSDAERCNDYTYVLDILHTLEVFG 1016
Query: 1020 GTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
GTLDEHMHLLLPALIRLFKVDAP DIRRAAI TLTRLIPRVQVTGHISSLVHHLKLVLDG
Sbjct: 1017 GTLDEHMHLLLPALIRLFKVDAPADIRRAAIRTLTRLIPRVQVTGHISSLVHHLKLVLDG 1076
Query: 1080 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL 1139
+NDEL+KDAVDALCCLA ALGEDFT+FIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL
Sbjct: 1077 RNDELQKDAVDALCCLAQALGEDFTVFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL 1136
Query: 1140 GSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQ-----------ASQRST 1188
GST AQ+LSRRVPVEVISDPLNDVD DPYED +D KQ RGHQ ASQRST
Sbjct: 1137 GSTTAQRLSRRVPVEVISDPLNDVDIDPYEDKSDVHKQFRGHQVNDGRLRTAGEASQRST 1196
Query: 1189 KEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKH 1248
KEDWAEWMRH SIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCW+QLN TSQK
Sbjct: 1197 KEDWAEWMRHFSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWAQLNETSQKQ 1256
Query: 1249 LVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1308
LV+SLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK
Sbjct: 1257 LVRSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1316
Query: 1309 EMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQ 1368
EMEFEGARS +MDANPV+VVEALIHINNQLHQHEAAVGILTYAQ L VQLKESWYEKLQ
Sbjct: 1317 EMEFEGARSKKMDANPVSVVEALIHINNQLHQHEAAVGILTYAQLHLGVQLKESWYEKLQ 1376
Query: 1369 RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE 1428
RW+DALKAYT KASQASNPH+VL+A LGRMRCLAALARWEELNNLCKEYWTPAEPAARLE
Sbjct: 1377 RWEDALKAYTAKASQASNPHLVLDAMLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE 1436
Query: 1429 MAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRR 1488
MAPMAA+AAWNMGEWDQMAEYVSRLDDGDE+KLR LGNTAA+GDGSS+GTF+RAVLLVR+
Sbjct: 1437 MAPMAASAAWNMGEWDQMAEYVSRLDDGDETKLRSLGNTAASGDGSSSGTFYRAVLLVRK 1496
Query: 1489 GK----------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPV 1526
GK VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPV
Sbjct: 1497 GKYDEAREFVDRARKCLATELAALVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPV 1556
Query: 1527 AEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRIS 1586
AEGRRA+IRNMWTERIQG KRNVEVWQA+LAVRALVLPPTED+ETWLKFASLCRKSGR+S
Sbjct: 1557 AEGRRALIRNMWTERIQGAKRNVEVWQAVLAVRALVLPPTEDIETWLKFASLCRKSGRVS 1616
Query: 1587 QARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646
QARSTLVKLLQYDPETS EN Y GPPQVM AYLKYQWSLGED+KRKEAFARLQ L+ EL
Sbjct: 1617 QARSTLVKLLQYDPETS-ENGWYSGPPQVMLAYLKYQWSLGEDIKRKEAFARLQVLSREL 1675
Query: 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ 1706
SS P+IQ A SL++ S+ VPL+ARV L+LG+W+ AL PGLDD+SI EI+ A+RNATQ
Sbjct: 1676 SSSPIIQPAKHISLSSGRSSTVPLLARVCLELGTWQWALSPGLDDDSIQEILTAFRNATQ 1735
Query: 1707 CATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSL 1766
CA W KAWH WALFNTAVMSHYT+RG P VA QFVV AVTGYFHSIACAA++KGVDDSL
Sbjct: 1736 CANTWAKAWHMWALFNTAVMSHYTMRGFPDVAAQFVVAAVTGYFHSIACAANSKGVDDSL 1795
Query: 1767 QDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSL 1826
QDILRLLTLWFNHGAT +VQ+ALQKGFAHVNINTWLVVLPQIIARIHSNN AVRELIQSL
Sbjct: 1796 QDILRLLTLWFNHGATADVQMALQKGFAHVNINTWLVVLPQIIARIHSNNHAVRELIQSL 1855
Query: 1827 LVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGVLVDQS 1875
LVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGVLVDQ+
Sbjct: 1856 LVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGVLVDQA 1904
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356539702|ref|XP_003538334.1| PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3247 bits (8418), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1619/1909 (84%), Positives = 1744/1909 (91%), Gaps = 41/1909 (2%)
Query: 1 MASTSQSLRYIGPPAPGAGGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGG 60
MA+ SQS RYIGPP+ G G DALNRILADLCT GNPKEGASLAL+KH+EE+ARD+ G
Sbjct: 1 MATASQSHRYIGPPSVAPGPG--DALNRILADLCTRGNPKEGASLALKKHLEEEARDISG 58
Query: 61 EAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120
EAFSRFMDQLYDRISGLL+S+D AENLGALRAIDELIDVALGENASKVS+FS+YMR VF+
Sbjct: 59 EAFSRFMDQLYDRISGLLDSSDVAENLGALRAIDELIDVALGENASKVSRFSSYMRIVFD 118
Query: 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180
KRD EILVLAS+VLGHLARAGGAMTADEVE QVK+ALDWLRG+RVEYRRFAAVLILKEM
Sbjct: 119 TKRDPEILVLASRVLGHLARAGGAMTADEVERQVKIALDWLRGNRVEYRRFAAVLILKEM 178
Query: 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240
AENASTVFNVHV EFVDAIWVALRDP L VRERAVEALRACLRVIEKRETRWRVQWYYRM
Sbjct: 179 AENASTVFNVHVPEFVDAIWVALRDPVLPVRERAVEALRACLRVIEKRETRWRVQWYYRM 238
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
FEATQDGLG+NAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS
Sbjct: 239 FEATQDGLGKNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 298
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYL 360
ITSLLPRIAHFLRDRFVTNYL ICM+HIL+VL++P +RDSGFIALGEMAGALDGEL HYL
Sbjct: 299 ITSLLPRIAHFLRDRFVTNYLTICMDHILSVLKVPQDRDSGFIALGEMAGALDGELIHYL 358
Query: 361 PTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA 420
PTIT+HLREAIAPRR KPSLEALACVG+IA+AMG MEPHVRGLLDIMFS GLST LV+A
Sbjct: 359 PTITTHLREAIAPRRIKPSLEALACVGSIAKAMGSAMEPHVRGLLDIMFSTGLSTVLVEA 418
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480
LEQI+ SIPSLLPTIQDRLLD IS VLSKSHY RPA + RG ++N+PQQVS+LNGSA
Sbjct: 419 LEQISTSIPSLLPTIQDRLLDSISMVLSKSHYHLGRPAQSVGRGTIINVPQQVSELNGSA 478
Query: 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFT 540
+QLALQTLARFNFKGH+LLEFAR+SVV+YLDDED ATRKDAALCCC+L+A+SFSG++ +
Sbjct: 479 LIQLALQTLARFNFKGHELLEFARESVVVYLDDEDGATRKDAALCCCRLIASSFSGMACS 538
Query: 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADC 600
FG+SR R+GGKRRRL+EELVEKLLI+AVADADVTVRHSIF+SL+G+RGFD++LAQAD
Sbjct: 539 HFGSSRLTRSGGKRRRLVEELVEKLLISAVADADVTVRHSIFTSLHGDRGFDEYLAQADN 598
Query: 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE 660
LSA+FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ SAD+KC+E
Sbjct: 599 LSAVFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ-SADSKCKE 657
Query: 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
ESAKL+GCLIRNCERLI PYIAPIHKALVARL++ +NAN G ISGVLVTVGDLARVGG
Sbjct: 658 ESAKLIGCLIRNCERLIIPYIAPIHKALVARLID---VNANTGTISGVLVTVGDLARVGG 714
Query: 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780
F MRQYI ELMPLIVEALLDGAAV+KREVAV+TLGQVVQSTGYVITPYNEYPQLLGLLLK
Sbjct: 715 FAMRQYIPELMPLIVEALLDGAAVSKREVAVATLGQVVQSTGYVITPYNEYPQLLGLLLK 774
Query: 781 MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ-LSGSHGEVTRAASDSGQHIQPMDEF 839
+LNGELVWSTRREVLKVLGIMGALDPH HKRNQ+ L G HG+VTR ASDS Q IQ MDEF
Sbjct: 775 LLNGELVWSTRREVLKVLGIMGALDPHLHKRNQKTLPGPHGDVTRPASDSSQQIQSMDEF 834
Query: 840 PMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPK 899
P+DLWPSFA+S+DYYSTVAINSLMRILRDPSLASYH KVVGSLMFIFKSMGLGCVPYLPK
Sbjct: 835 PLDLWPSFASSDDYYSTVAINSLMRILRDPSLASYHLKVVGSLMFIFKSMGLGCVPYLPK 894
Query: 900 VLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR 959
VLPDLFHTVRTC+D LKD+ITWKLGTLVSIVRQHIRKYLQ+L SLISE WS+F+LPA R
Sbjct: 895 VLPDLFHTVRTCEDSLKDFITWKLGTLVSIVRQHIRKYLQDLLSLISEFWSAFTLPAPAR 954
Query: 960 TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG 1019
G PVLHLV+QLCLALNDEFRT+LPVILP CIQVLSDAERCNDYTYVLDILHTLEVFG
Sbjct: 955 PGPGYPVLHLVEQLCLALNDEFRTYLPVILPGCIQVLSDAERCNDYTYVLDILHTLEVFG 1014
Query: 1020 GTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
GTLDEHMHLLLPALIRLFKVDA VDIRRAAI+TLT LIPRVQVTGHISSLVHHLKLVLDG
Sbjct: 1015 GTLDEHMHLLLPALIRLFKVDASVDIRRAAIKTLTSLIPRVQVTGHISSLVHHLKLVLDG 1074
Query: 1080 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL 1139
KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLL K+RLRHKEFEEIEGRL+RREPLIL
Sbjct: 1075 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLQKYRLRHKEFEEIEGRLQRREPLIL 1134
Query: 1140 GSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQ-----------ASQRST 1188
G TA+Q+L+RR+PVEVISDPL+DV+ DPYEDG+DA K LR HQ ASQRST
Sbjct: 1135 GITASQRLNRRLPVEVISDPLDDVEIDPYEDGSDAHK-LRDHQVNDGRLRTAGEASQRST 1193
Query: 1189 KEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKH 1248
KEDWAEWMRH SI+LLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCW+QLN TSQK
Sbjct: 1194 KEDWAEWMRHFSIQLLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWAQLNETSQKQ 1253
Query: 1249 LVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1308
LVQ+LEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK
Sbjct: 1254 LVQNLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1313
Query: 1309 EMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQ 1368
EMEFEGARS +MDANPVAVVE LIHIN+QLHQHEAA+GILTYAQ+ LD QLKESWYEKLQ
Sbjct: 1314 EMEFEGARSKKMDANPVAVVEVLIHINSQLHQHEAALGILTYAQQHLDFQLKESWYEKLQ 1373
Query: 1369 RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE 1428
RWDDALKAYT KASQA++PH+VL+ATLG+MRCLAALA+W+ELN LCKE+WTPAEPAARLE
Sbjct: 1374 RWDDALKAYTAKASQATSPHLVLDATLGKMRCLAALAQWDELNILCKEFWTPAEPAARLE 1433
Query: 1429 MAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRR 1488
MAPMAA+AAWNMGEWDQMAEYVSRLDDGDE+KLRGLGNTAA+ DGSS+GTFFRAVLLVRR
Sbjct: 1434 MAPMAASAAWNMGEWDQMAEYVSRLDDGDETKLRGLGNTAASSDGSSSGTFFRAVLLVRR 1493
Query: 1489 GK----------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPV 1526
GK VLESYERAYSNMVRVQQLSELEEVIDY TLP+GN V
Sbjct: 1494 GKYDEAREYVERARKCLATELAALVLESYERAYSNMVRVQQLSELEEVIDYRTLPIGNRV 1553
Query: 1527 AEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRIS 1586
A+ RRA+IRNMWT+RI+G K NVEVWQALLAVRALVLPP EDVE+WLKFASLCRKSGRIS
Sbjct: 1554 ADERRALIRNMWTQRIEGAKSNVEVWQALLAVRALVLPPVEDVESWLKFASLCRKSGRIS 1613
Query: 1587 QARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646
QA+STLVKLLQYDPE S ENVRYHGPPQVM AYLKYQWSLGED KR+EAF RLQ LAMEL
Sbjct: 1614 QAKSTLVKLLQYDPEKSPENVRYHGPPQVMLAYLKYQWSLGEDSKRREAFIRLQNLAMEL 1673
Query: 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ 1706
SS P IQ +S T + +VPL+ARVYL LGSW+ +L PGL DESI +I+ A+ ATQ
Sbjct: 1674 SSAPNIQPVTPSSFTNGLNLSVPLLARVYLNLGSWQWSLSPGLVDESIKDILNAFTKATQ 1733
Query: 1707 CATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSL 1766
A KW KAWH WALFNTAVMSHYTLRG P VA QFV AVTGYFHSIACAA++KGVDDSL
Sbjct: 1734 YANKWAKAWHKWALFNTAVMSHYTLRGFPDVAAQFVAAAVTGYFHSIACAANSKGVDDSL 1793
Query: 1767 QDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSL 1826
QDILRLLTLWFNHGAT EVQ+AL+KGF+ VNINTWLVVLPQIIARIHSNN AVRELIQSL
Sbjct: 1794 QDILRLLTLWFNHGATAEVQMALKKGFSLVNINTWLVVLPQIIARIHSNNHAVRELIQSL 1853
Query: 1827 LVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGVLVDQS 1875
LVRIGQ+HPQALMYPLLVACKSISNLR+AAAQEVVDKVRQHSGVLVDQ+
Sbjct: 1854 LVRIGQNHPQALMYPLLVACKSISNLRKAAAQEVVDKVRQHSGVLVDQA 1902
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497486|ref|XP_003517591.1| PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3228 bits (8369), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1620/1909 (84%), Positives = 1738/1909 (91%), Gaps = 41/1909 (2%)
Query: 1 MASTSQSLRYIGPPAPGAGGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGG 60
MA+ SQS RYIG P G G DALNRILADLCT GNPKEGASLAL+KH+EE+ARD+ G
Sbjct: 1 MATASQSHRYIG--PPSVGPGPGDALNRILADLCTRGNPKEGASLALKKHLEEEARDISG 58
Query: 61 EAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120
EAFSRFMDQLYDRISGLL+S+D AENLGALRAIDELIDVALGENASKVS+FS+YMR VF+
Sbjct: 59 EAFSRFMDQLYDRISGLLDSSDVAENLGALRAIDELIDVALGENASKVSRFSSYMRIVFD 118
Query: 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180
KRD EILVLAS+VLGHLARAGGAMTADEVE QVK+ALDWLRG+RVEYRRFAAVLILKEM
Sbjct: 119 TKRDPEILVLASRVLGHLARAGGAMTADEVERQVKIALDWLRGNRVEYRRFAAVLILKEM 178
Query: 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240
AENASTVFNVHV EFVDAIWVALRDP L VRERAVEALRACLRVIEKRETRWRVQWYYRM
Sbjct: 179 AENASTVFNVHVPEFVDAIWVALRDPALPVRERAVEALRACLRVIEKRETRWRVQWYYRM 238
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
FEATQDGLG+NAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS
Sbjct: 239 FEATQDGLGKNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 298
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYL 360
ITSLLPRIAHFLRDRFVTNYL ICM+HIL+VL+ P +RDSGFIALGEMAGALDGEL HYL
Sbjct: 299 ITSLLPRIAHFLRDRFVTNYLTICMDHILSVLKAPQDRDSGFIALGEMAGALDGELIHYL 358
Query: 361 PTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA 420
PTIT+HLREAIAPRR KPSLEALACVG+IA+AMG MEPHVRGLLDIMFS GLST LV+A
Sbjct: 359 PTITTHLREAIAPRRIKPSLEALACVGSIAKAMGSAMEPHVRGLLDIMFSTGLSTVLVEA 418
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480
LEQI+ SIPSLLPTIQ RLLD IS VLSKSHY RPA + RG ++N+PQQVS+LNGSA
Sbjct: 419 LEQISTSIPSLLPTIQGRLLDSISMVLSKSHYHLGRPAQSVGRGIIINVPQQVSELNGSA 478
Query: 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFT 540
VQLALQTLARFNFKGH+LLEFAR+SVV+YLDDED ATRKDAALCCC+L+A+SFSG++ +
Sbjct: 479 LVQLALQTLARFNFKGHELLEFARESVVVYLDDEDGATRKDAALCCCRLIASSFSGMACS 538
Query: 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADC 600
FG+SR R+GGKRR L+EELVEKLLI+AVADADVTVRHSIF+SL+G+RGFD++LAQAD
Sbjct: 539 HFGSSRLTRSGGKRRILVEELVEKLLISAVADADVTVRHSIFTSLHGDRGFDEYLAQADN 598
Query: 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE 660
LSA+FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ SAD+KC+E
Sbjct: 599 LSAVFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ-SADSKCKE 657
Query: 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
ESAKL+GCLIRNCERLI PY APIHKALVARL++ +NAN G ISGVLVTVGDLARVGG
Sbjct: 658 ESAKLIGCLIRNCERLILPYTAPIHKALVARLVD---VNANTGTISGVLVTVGDLARVGG 714
Query: 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780
F MRQYI ELMPLIVEALLDGAAV+KREVAV+TLGQVVQSTGYVITPYNEYPQLLGLLLK
Sbjct: 715 FAMRQYIPELMPLIVEALLDGAAVSKREVAVATLGQVVQSTGYVITPYNEYPQLLGLLLK 774
Query: 781 MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ-LSGSHGEVTRAASDSGQHIQPMDEF 839
+LNGELVWSTRREVLKVLGIMGALDPH HKRNQ+ L G HG+VTR+ASDS Q IQ MDEF
Sbjct: 775 LLNGELVWSTRREVLKVLGIMGALDPHLHKRNQKTLPGPHGDVTRSASDSSQQIQSMDEF 834
Query: 840 PMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPK 899
PMDLWPSFA+S+DYYSTVAINSLMRILRDPSLASYH KVVGSLMFIFKSMGLGCVPYLPK
Sbjct: 835 PMDLWPSFASSDDYYSTVAINSLMRILRDPSLASYHLKVVGSLMFIFKSMGLGCVPYLPK 894
Query: 900 VLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR 959
VLPDLFHTVRTC+D LKD+ITWKLGTLVSIVRQHIRKYLQ+L SLISE WS+F+LPA R
Sbjct: 895 VLPDLFHTVRTCEDSLKDFITWKLGTLVSIVRQHIRKYLQDLLSLISEFWSAFTLPAPAR 954
Query: 960 TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG 1019
G PVLHLV+QLCLALNDEFRT+LPVILP CIQVLSDAERCNDYTYVLDILHTLEVFG
Sbjct: 955 PGLGYPVLHLVEQLCLALNDEFRTYLPVILPGCIQVLSDAERCNDYTYVLDILHTLEVFG 1014
Query: 1020 GTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
GTLDEHMHLLLPALIR FKVDA VDIRRAAI+TLT LIPRVQVTGHISSLVHHLKLVLDG
Sbjct: 1015 GTLDEHMHLLLPALIRFFKVDASVDIRRAAIKTLTSLIPRVQVTGHISSLVHHLKLVLDG 1074
Query: 1080 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL 1139
KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLL K+RLRHKEFEEIEGRL+RREPLIL
Sbjct: 1075 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLQKYRLRHKEFEEIEGRLQRREPLIL 1134
Query: 1140 GSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQ-----------ASQRST 1188
G TA+Q+L+RR+PVEVISDPL+DV+ DPYEDG+DA K LRGHQ ASQRST
Sbjct: 1135 GITASQRLNRRLPVEVISDPLDDVEIDPYEDGSDAHK-LRGHQVNDGRLRTAGEASQRST 1193
Query: 1189 KEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKH 1248
KEDWAEWMRH SI+LLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCW+QLN TSQK
Sbjct: 1194 KEDWAEWMRHFSIQLLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWAQLNETSQKQ 1253
Query: 1249 LVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1308
LV++LEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK
Sbjct: 1254 LVRNLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1313
Query: 1309 EMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQ 1368
EMEFEGARS +MDANPVAVVEALIHINNQLHQHEAAVGILTYAQ+ LD QLKESWYEKLQ
Sbjct: 1314 EMEFEGARSKKMDANPVAVVEALIHINNQLHQHEAAVGILTYAQQHLDFQLKESWYEKLQ 1373
Query: 1369 RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE 1428
RWDDALKAYT KASQA++PH+VL+ATLG+MRCLAALA+W+ELN LCKE+WTPAEPAARLE
Sbjct: 1374 RWDDALKAYTAKASQATSPHLVLDATLGKMRCLAALAQWDELNILCKEFWTPAEPAARLE 1433
Query: 1429 MAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRR 1488
MAPMAANAAWNMGEWDQMAEYVSRLDDGDE+KLRGLGNTAA+ DGSS+GTFFRAVLLVRR
Sbjct: 1434 MAPMAANAAWNMGEWDQMAEYVSRLDDGDETKLRGLGNTAASSDGSSSGTFFRAVLLVRR 1493
Query: 1489 GK----------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPV 1526
GK VLESYERAYSNMVRVQQLSELEEVIDY TLP G+ V
Sbjct: 1494 GKYDEAREYVERARKCLATELAALVLESYERAYSNMVRVQQLSELEEVIDYRTLPTGDQV 1553
Query: 1527 AEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRIS 1586
AE RRA+IRNMWT+RI+G K NVEVWQALL VRALVLPP EDVETWLKFASLCRKSGRIS
Sbjct: 1554 AEERRALIRNMWTQRIEGAKSNVEVWQALLVVRALVLPPVEDVETWLKFASLCRKSGRIS 1613
Query: 1587 QARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646
QA+STLVKLLQYDPE S ENVRYHGPPQVM AYLKYQWSLGED KR+EAF RLQ LAMEL
Sbjct: 1614 QAKSTLVKLLQYDPEKSPENVRYHGPPQVMLAYLKYQWSLGEDSKRREAFIRLQNLAMEL 1673
Query: 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ 1706
SS P IQ +S T + +VPL+ARVYL LGSW+ +L PGL DESI +I+ A+ ATQ
Sbjct: 1674 SSAPSIQPVTPSSFTNGLNPSVPLLARVYLNLGSWQWSLSPGLVDESIKDILNAFTKATQ 1733
Query: 1707 CATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSL 1766
A KW KAWH WALFNTAVMSHYTLRG P VA QFV AVTGYFHSIACAA++KGVDDSL
Sbjct: 1734 YANKWAKAWHKWALFNTAVMSHYTLRGFPDVAAQFVAAAVTGYFHSIACAANSKGVDDSL 1793
Query: 1767 QDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSL 1826
QDILRLLTLWFNHGAT EVQ+AL+KGF+ VNINTWLVVLPQIIARIHSNN AVRELIQSL
Sbjct: 1794 QDILRLLTLWFNHGATAEVQMALKKGFSLVNINTWLVVLPQIIARIHSNNHAVRELIQSL 1853
Query: 1827 LVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGVLVDQS 1875
LVRIGQ+HPQALMYPLLVACKSISNLR+AAAQEVVDKVRQHSGVLVDQ+
Sbjct: 1854 LVRIGQNHPQALMYPLLVACKSISNLRKAAAQEVVDKVRQHSGVLVDQA 1902
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475538|ref|XP_002275614.2| PREDICTED: serine/threonine-protein kinase TOR-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3216 bits (8338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1589/1909 (83%), Positives = 1708/1909 (89%), Gaps = 67/1909 (3%)
Query: 1 MASTSQSLRYIGPPAPGAGGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGG 60
MAST+QS+R+ P A G SLDALNRILADLC G PK+GA+LAL+ H+EE+ARDL G
Sbjct: 1 MASTAQSIRFGAP----AAGSSLDALNRILADLCARGPPKDGAALALKIHLEEEARDLSG 56
Query: 61 EAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120
EAFSRFMDQLYDRIS LL+SND AEN+GALRAIDELIDVALGE+ASKVSKFS Y+RTVFE
Sbjct: 57 EAFSRFMDQLYDRISNLLDSNDVAENMGALRAIDELIDVALGESASKVSKFSGYVRTVFE 116
Query: 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180
KRDR++L+LAS VLGHLARAGGAMTADEVE QV+ AL+WLRG+R+EYRRFAAVLILKEM
Sbjct: 117 AKRDRDVLILASTVLGHLARAGGAMTADEVECQVQNALEWLRGERIEYRRFAAVLILKEM 176
Query: 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240
AENASTVFNVHV EFVDAIWVALRDPTL +RERAVEALRACLRVIEKRETRWRVQWYYRM
Sbjct: 177 AENASTVFNVHVPEFVDAIWVALRDPTLPIRERAVEALRACLRVIEKRETRWRVQWYYRM 236
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVA+IV+ YLEH+DRLVRLS
Sbjct: 237 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVADIVITYLEHKDRLVRLS 296
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYL 360
ITSLLPRIAHFLRDRFVTNYL ICMNHIL VLR PAERDSGFIALGEMAGALDGEL HY+
Sbjct: 297 ITSLLPRIAHFLRDRFVTNYLNICMNHILAVLRQPAERDSGFIALGEMAGALDGELVHYM 356
Query: 361 PTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA 420
PTI SHLR+AIAPRRG+PSL+AL CVG+IA+AMG VMEP+VR LLD+MF GLS L++A
Sbjct: 357 PTIISHLRDAIAPRRGRPSLDALTCVGSIAKAMGSVMEPYVRSLLDVMFFPGLSHALIEA 416
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480
LEQIT SIPSLLPTIQDRLLDCIS LS+SHY ARPA RG+ +N QQV D + A
Sbjct: 417 LEQITASIPSLLPTIQDRLLDCISIALSRSHYPLARPAVAMARGSTVNTAQQVLDFSSPA 476
Query: 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFT 540
VQL+LQTLA FNFKGH+LLEFAR+SVV+YLDDED ATRKDAALCCC L+ANSFSG +
Sbjct: 477 LVQLSLQTLAHFNFKGHELLEFARESVVVYLDDEDGATRKDAALCCCSLIANSFSGTTCP 536
Query: 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADC 600
QF +SRSNRTGGKRRRL+EE+VEKLLIAA+ADADVTVR SIF SL+ N GFD+FLAQAD
Sbjct: 537 QFSSSRSNRTGGKRRRLVEEIVEKLLIAAIADADVTVRRSIFLSLHENGGFDEFLAQADS 596
Query: 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE 660
LSA+FAALNDEDFDVREYAISV+GRLSEKNPAYVLPALRRHLIQLLTYLEQ SAD+KCRE
Sbjct: 597 LSAVFAALNDEDFDVREYAISVSGRLSEKNPAYVLPALRRHLIQLLTYLEQ-SADSKCRE 655
Query: 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
ESAKLLGCLIRNCERLI PYIAPIHKALVA+L EG+G+NANNGIISGVLVTVGDLARVGG
Sbjct: 656 ESAKLLGCLIRNCERLILPYIAPIHKALVAKLAEGSGVNANNGIISGVLVTVGDLARVGG 715
Query: 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780
MR +++LMPLIVEAL+DGAAVTKREVAV+TLGQVVQSTGYVI PYN YPQLLGLLLK
Sbjct: 716 SAMRDNVTDLMPLIVEALMDGAAVTKREVAVATLGQVVQSTGYVIAPYNAYPQLLGLLLK 775
Query: 781 MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ-LSGSHGEVTRAASDSGQHIQPMDEF 839
+LNGEL W+TRREVLKVLGIMGALDPH HKRNQQ L G HGEV R ASD+GQHI+ MDE
Sbjct: 776 LLNGELAWTTRREVLKVLGIMGALDPHVHKRNQQCLPGLHGEVARPASDTGQHIRSMDEL 835
Query: 840 PMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPK 899
PMDLWPSFATSEDYYSTVAINSLMRILRD SL+SYHQKVVGSLMFIFKSMGLGCVPYLPK
Sbjct: 836 PMDLWPSFATSEDYYSTVAINSLMRILRDASLSSYHQKVVGSLMFIFKSMGLGCVPYLPK 895
Query: 900 VLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR 959
VLPDLF TVRTC+D LK++ITWKLGTLVSIVRQHIRKYL EL LISELW SFSLP++NR
Sbjct: 896 VLPDLFLTVRTCEDGLKEFITWKLGTLVSIVRQHIRKYLPELLLLISELWPSFSLPSSNR 955
Query: 960 TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG 1019
GLP+LHLV+QLCLALNDEFRT+LP+ILP CIQVLSDAERCNDYTYVLDILHTLEVFG
Sbjct: 956 PVHGLPILHLVEQLCLALNDEFRTYLPLILPSCIQVLSDAERCNDYTYVLDILHTLEVFG 1015
Query: 1020 GTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
GTLDEHMHLLLPALIRLFKVDA V IRRAA +TLTRLIPRVQVTGHIS+LVHHLKLVLDG
Sbjct: 1016 GTLDEHMHLLLPALIRLFKVDASVAIRRAAFKTLTRLIPRVQVTGHISALVHHLKLVLDG 1075
Query: 1080 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL 1139
KNDELRKDAVDALCCLAHALG DFTIFIPSIHKLL+KHRLRHKEFEEIEGRL+RREPLIL
Sbjct: 1076 KNDELRKDAVDALCCLAHALGGDFTIFIPSIHKLLMKHRLRHKEFEEIEGRLQRREPLIL 1135
Query: 1140 GSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQ-----------ASQRST 1188
GSTAAQ+L R PVEV SDPLNDV++DPYEDG+DAQ+Q+RGHQ ASQRST
Sbjct: 1136 GSTAAQRLISRFPVEVTSDPLNDVENDPYEDGSDAQRQIRGHQVNDGRLRTAGEASQRST 1195
Query: 1189 KEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKH 1248
KEDWAEWMRH SIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCW+QLN TSQK
Sbjct: 1196 KEDWAEWMRHFSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWAQLNDTSQKQ 1255
Query: 1249 LVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1308
LV+SLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK
Sbjct: 1256 LVRSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1315
Query: 1309 EMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQ 1368
EMEFEGARS +MDANPVAVVEALIHINNQLHQHEAAVGILTYAQ+ LDVQLKESWYEKLQ
Sbjct: 1316 EMEFEGARSKKMDANPVAVVEALIHINNQLHQHEAAVGILTYAQQNLDVQLKESWYEKLQ 1375
Query: 1369 RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE 1428
RWDDALKAYT KASQAS PH+VLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE
Sbjct: 1376 RWDDALKAYTAKASQASTPHLVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE 1435
Query: 1429 MAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRR 1488
MAPMAANAAWNMGEWDQMA+YVSRLDDGDE+KLR LGNT A+GDGSSNGTFFRAVLLVRR
Sbjct: 1436 MAPMAANAAWNMGEWDQMADYVSRLDDGDETKLRVLGNTTASGDGSSNGTFFRAVLLVRR 1495
Query: 1489 GK----------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPV 1526
GK VLESY+RAYSNMVRVQQLSELE
Sbjct: 1496 GKYDEAREFVERARKCLATELAALVLESYDRAYSNMVRVQQLSELE-------------- 1541
Query: 1527 AEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRIS 1586
ERIQG KRNVEVWQ LLAVRALVLPP ED+E WLKF+ LCRK+GRIS
Sbjct: 1542 -------------ERIQGAKRNVEVWQVLLAVRALVLPPIEDIENWLKFSYLCRKNGRIS 1588
Query: 1587 QARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646
QARSTL+KLLQYDPETS ENVRYHGPPQVM AYLKYQWSLGEDLKRKEAF RLQ LA+EL
Sbjct: 1589 QARSTLIKLLQYDPETSPENVRYHGPPQVMVAYLKYQWSLGEDLKRKEAFGRLQNLAIEL 1648
Query: 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ 1706
SS IQSA ST L + +S +VPL+ARVY +LG+W+ AL P LD++SI EI++A+RNATQ
Sbjct: 1649 SSAN-IQSATSTGLMSTSSVSVPLLARVYRRLGTWQWALSPALDEDSIQEILSAFRNATQ 1707
Query: 1707 CATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSL 1766
CATKW KAWHSWALFNTAVMSHYTLRG P++A QFVV AVTGYFHSIA AA+AKGVDDSL
Sbjct: 1708 CATKWAKAWHSWALFNTAVMSHYTLRGFPNIAAQFVVAAVTGYFHSIAFAANAKGVDDSL 1767
Query: 1767 QDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSL 1826
QDILRLLTLWFNHGAT EVQ+AL KGF++VNI+TWLVVLPQIIARIHSNN AVRELIQSL
Sbjct: 1768 QDILRLLTLWFNHGATAEVQMALHKGFSYVNIDTWLVVLPQIIARIHSNNHAVRELIQSL 1827
Query: 1827 LVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGVLVDQS 1875
LVRIG+SHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSG LVDQ+
Sbjct: 1828 LVRIGESHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGTLVDQA 1876
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356539704|ref|XP_003538335.1| PREDICTED: serine/threonine-protein kinase TOR-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3189 bits (8267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1599/1909 (83%), Positives = 1720/1909 (90%), Gaps = 68/1909 (3%)
Query: 1 MASTSQSLRYIGPPAPGAGGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGG 60
MA+ SQS RYIGPP+ G G DALNRILADLCT GNPKEGASLAL+KH+EE+ARD+ G
Sbjct: 1 MATASQSHRYIGPPSVAPGPG--DALNRILADLCTRGNPKEGASLALKKHLEEEARDISG 58
Query: 61 EAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120
EAFSRFMDQLYDRISGLL+S+D AENLGALRAIDELIDVALGENASKVS+FS+YMR VF+
Sbjct: 59 EAFSRFMDQLYDRISGLLDSSDVAENLGALRAIDELIDVALGENASKVSRFSSYMRIVFD 118
Query: 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180
KRD EILVLAS+VLGHLARAGGAMTADEVE QVK+ALDWLRG+RVEYRRFAAVLILKEM
Sbjct: 119 TKRDPEILVLASRVLGHLARAGGAMTADEVERQVKIALDWLRGNRVEYRRFAAVLILKEM 178
Query: 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240
AENASTVFNVHV EFVDAIWVALRDP L VRERAVEALRACLRVIEKRETRWRVQWYYRM
Sbjct: 179 AENASTVFNVHVPEFVDAIWVALRDPVLPVRERAVEALRACLRVIEKRETRWRVQWYYRM 238
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
FEATQDGLG+NAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS
Sbjct: 239 FEATQDGLGKNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 298
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYL 360
ITSLLPRIAHFLRDRFVTNYL ICM+HIL+VL++P +RDSGFIALGEMAGALDGEL HYL
Sbjct: 299 ITSLLPRIAHFLRDRFVTNYLTICMDHILSVLKVPQDRDSGFIALGEMAGALDGELIHYL 358
Query: 361 PTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA 420
PTIT+HLREAIAPRR KPSLEALACVG+IA+AMG MEPHVRGLLDIMFS GLST LV+A
Sbjct: 359 PTITTHLREAIAPRRIKPSLEALACVGSIAKAMGSAMEPHVRGLLDIMFSTGLSTVLVEA 418
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480
LEQI+ SIPSLLPTIQDRLLD IS VLSKSHY RPA + RG ++N+PQQVS+LNGSA
Sbjct: 419 LEQISTSIPSLLPTIQDRLLDSISMVLSKSHYHLGRPAQSVGRGTIINVPQQVSELNGSA 478
Query: 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFT 540
+QLALQTLARFNFKGH+LLEFAR+SVV+YLDDED ATRKDAALCCC+L+A+SFSG++ +
Sbjct: 479 LIQLALQTLARFNFKGHELLEFARESVVVYLDDEDGATRKDAALCCCRLIASSFSGMACS 538
Query: 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADC 600
FG+SR R+GGKRRRL+EELVEKLLI+AVADADVTVRHSIF+SL+G+RGFD++LAQAD
Sbjct: 539 HFGSSRLTRSGGKRRRLVEELVEKLLISAVADADVTVRHSIFTSLHGDRGFDEYLAQADN 598
Query: 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE 660
LSA+FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ SAD+KC+E
Sbjct: 599 LSAVFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ-SADSKCKE 657
Query: 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
ESAKL+GCLIRNCERLI PYIAPIHKALVARL++ +NAN G ISGVLVTVGDLARVGG
Sbjct: 658 ESAKLIGCLIRNCERLIIPYIAPIHKALVARLID---VNANTGTISGVLVTVGDLARVGG 714
Query: 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780
F MRQYI ELMPLIVEALLDGAAV+KREVAV+TLGQVVQSTGYVITPYNEYPQLLGLLLK
Sbjct: 715 FAMRQYIPELMPLIVEALLDGAAVSKREVAVATLGQVVQSTGYVITPYNEYPQLLGLLLK 774
Query: 781 MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ-LSGSHGEVTRAASDSGQHIQPMDEF 839
+LNGELVWSTRREVLKVLGIMGALDPH HKRNQ+ L G HG+VTR ASDS Q IQ MDEF
Sbjct: 775 LLNGELVWSTRREVLKVLGIMGALDPHLHKRNQKTLPGPHGDVTRPASDSSQQIQSMDEF 834
Query: 840 PMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPK 899
P+DLWPSFA+S+DYYSTVAINSLMRILRDPSLASYH KVVGSLMFIFKSMGLGCVPYLPK
Sbjct: 835 PLDLWPSFASSDDYYSTVAINSLMRILRDPSLASYHLKVVGSLMFIFKSMGLGCVPYLPK 894
Query: 900 VLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR 959
VLPDLFHTVRTC+D LKD+ITWKLGTLVSIVRQHIRKYLQ+L SLISE WS+F+LPA R
Sbjct: 895 VLPDLFHTVRTCEDSLKDFITWKLGTLVSIVRQHIRKYLQDLLSLISEFWSAFTLPAPAR 954
Query: 960 TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG 1019
G PVLHLV+QLCLALNDEFRT+LPVILP CIQVLSDAERCNDYTYVLDILHTLEVFG
Sbjct: 955 PGPGYPVLHLVEQLCLALNDEFRTYLPVILPGCIQVLSDAERCNDYTYVLDILHTLEVFG 1014
Query: 1020 GTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
GTLDEHMHLLLPALIRLFKVDA VDIRRAAI+TLT LIPRVQVTGHISSLVHHLKLVLDG
Sbjct: 1015 GTLDEHMHLLLPALIRLFKVDASVDIRRAAIKTLTSLIPRVQVTGHISSLVHHLKLVLDG 1074
Query: 1080 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL 1139
KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLL K+RLRHKEFEEIEGRL+RREPLIL
Sbjct: 1075 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLQKYRLRHKEFEEIEGRLQRREPLIL 1134
Query: 1140 GSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQ-----------ASQRST 1188
G TA+Q+L+RR+PVEVISDPL+DV+ DPYEDG+DA K LR HQ ASQRST
Sbjct: 1135 GITASQRLNRRLPVEVISDPLDDVEIDPYEDGSDAHK-LRDHQVNDGRLRTAGEASQRST 1193
Query: 1189 KEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKH 1248
KEDWAEWMRH SI+LLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCW+QLN TSQK
Sbjct: 1194 KEDWAEWMRHFSIQLLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWAQLNETSQKQ 1253
Query: 1249 LVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1308
LVQ+LEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK
Sbjct: 1254 LVQNLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1313
Query: 1309 EMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQ 1368
EMEFEGARS +MDANPVAVVE LIHIN+QLHQHEAA+GILTYAQ+ LD QLKESWYEKLQ
Sbjct: 1314 EMEFEGARSKKMDANPVAVVEVLIHINSQLHQHEAALGILTYAQQHLDFQLKESWYEKLQ 1373
Query: 1369 RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE 1428
RWDDALKAYT KASQA++PH+VL+ATLG+MRCLAALA+W+ELN LCKE+WTPAEPAARLE
Sbjct: 1374 RWDDALKAYTAKASQATSPHLVLDATLGKMRCLAALAQWDELNILCKEFWTPAEPAARLE 1433
Query: 1429 MAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRR 1488
MAPMAA+AAWNMGEWDQMAEYVSRLDDGDE+KLRGLGNTAA+ DGSS+GTFFRAVLLVRR
Sbjct: 1434 MAPMAASAAWNMGEWDQMAEYVSRLDDGDETKLRGLGNTAASSDGSSSGTFFRAVLLVRR 1493
Query: 1489 GK----------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPV 1526
GK VLESYERAYSNMVRVQQLSELE
Sbjct: 1494 GKYDEAREYVERARKCLATELAALVLESYERAYSNMVRVQQLSELE-------------- 1539
Query: 1527 AEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRIS 1586
ERI+G K NVEVWQALLAVRALVLPP EDVE+WLKFASLCRKSGRIS
Sbjct: 1540 -------------ERIEGAKSNVEVWQALLAVRALVLPPVEDVESWLKFASLCRKSGRIS 1586
Query: 1587 QARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646
QA+STLVKLLQYDPE S ENVRYHGPPQVM AYLKYQWSLGED KR+EAF RLQ LAMEL
Sbjct: 1587 QAKSTLVKLLQYDPEKSPENVRYHGPPQVMLAYLKYQWSLGEDSKRREAFIRLQNLAMEL 1646
Query: 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ 1706
SS P IQ +S T + +VPL+ARVYL LGSW+ +L PGL DESI +I+ A+ ATQ
Sbjct: 1647 SSAPNIQPVTPSSFTNGLNLSVPLLARVYLNLGSWQWSLSPGLVDESIKDILNAFTKATQ 1706
Query: 1707 CATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSL 1766
A KW KAWH WALFNTAVMSHYTLRG P VA QFV AVTGYFHSIACAA++KGVDDSL
Sbjct: 1707 YANKWAKAWHKWALFNTAVMSHYTLRGFPDVAAQFVAAAVTGYFHSIACAANSKGVDDSL 1766
Query: 1767 QDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSL 1826
QDILRLLTLWFNHGAT EVQ+AL+KGF+ VNINTWLVVLPQIIARIHSNN AVRELIQSL
Sbjct: 1767 QDILRLLTLWFNHGATAEVQMALKKGFSLVNINTWLVVLPQIIARIHSNNHAVRELIQSL 1826
Query: 1827 LVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGVLVDQS 1875
LVRIGQ+HPQALMYPLLVACKSISNLR+AAAQEVVDKVRQHSGVLVDQ+
Sbjct: 1827 LVRIGQNHPQALMYPLLVACKSISNLRKAAAQEVVDKVRQHSGVLVDQA 1875
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497488|ref|XP_003517592.1| PREDICTED: serine/threonine-protein kinase TOR-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3171 bits (8221), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1600/1909 (83%), Positives = 1715/1909 (89%), Gaps = 68/1909 (3%)
Query: 1 MASTSQSLRYIGPPAPGAGGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGG 60
MA+ SQS RYIG P G G DALNRILADLCT GNPKEGASLAL+KH+EE+ARD+ G
Sbjct: 1 MATASQSHRYIG--PPSVGPGPGDALNRILADLCTRGNPKEGASLALKKHLEEEARDISG 58
Query: 61 EAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120
EAFSRFMDQLYDRISGLL+S+D AENLGALRAIDELIDVALGENASKVS+FS+YMR VF+
Sbjct: 59 EAFSRFMDQLYDRISGLLDSSDVAENLGALRAIDELIDVALGENASKVSRFSSYMRIVFD 118
Query: 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180
KRD EILVLAS+VLGHLARAGGAMTADEVE QVK+ALDWLRG+RVEYRRFAAVLILKEM
Sbjct: 119 TKRDPEILVLASRVLGHLARAGGAMTADEVERQVKIALDWLRGNRVEYRRFAAVLILKEM 178
Query: 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240
AENASTVFNVHV EFVDAIWVALRDP L VRERAVEALRACLRVIEKRETRWRVQWYYRM
Sbjct: 179 AENASTVFNVHVPEFVDAIWVALRDPALPVRERAVEALRACLRVIEKRETRWRVQWYYRM 238
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
FEATQDGLG+NAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS
Sbjct: 239 FEATQDGLGKNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 298
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYL 360
ITSLLPRIAHFLRDRFVTNYL ICM+HIL+VL+ P +RDSGFIALGEMAGALDGEL HYL
Sbjct: 299 ITSLLPRIAHFLRDRFVTNYLTICMDHILSVLKAPQDRDSGFIALGEMAGALDGELIHYL 358
Query: 361 PTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA 420
PTIT+HLREAIAPRR KPSLEALACVG+IA+AMG MEPHVRGLLDIMFS GLST LV+A
Sbjct: 359 PTITTHLREAIAPRRIKPSLEALACVGSIAKAMGSAMEPHVRGLLDIMFSTGLSTVLVEA 418
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480
LEQI+ SIPSLLPTIQ RLLD IS VLSKSHY RPA + RG ++N+PQQVS+LNGSA
Sbjct: 419 LEQISTSIPSLLPTIQGRLLDSISMVLSKSHYHLGRPAQSVGRGIIINVPQQVSELNGSA 478
Query: 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFT 540
VQLALQTLARFNFKGH+LLEFAR+SVV+YLDDED ATRKDAALCCC+L+A+SFSG++ +
Sbjct: 479 LVQLALQTLARFNFKGHELLEFARESVVVYLDDEDGATRKDAALCCCRLIASSFSGMACS 538
Query: 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADC 600
FG+SR R+GGKRR L+EELVEKLLI+AVADADVTVRHSIF+SL+G+RGFD++LAQAD
Sbjct: 539 HFGSSRLTRSGGKRRILVEELVEKLLISAVADADVTVRHSIFTSLHGDRGFDEYLAQADN 598
Query: 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE 660
LSA+FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ SAD+KC+E
Sbjct: 599 LSAVFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ-SADSKCKE 657
Query: 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
ESAKL+GCLIRNCERLI PY APIHKALVARL++ +NAN G ISGVLVTVGDLARVGG
Sbjct: 658 ESAKLIGCLIRNCERLILPYTAPIHKALVARLVD---VNANTGTISGVLVTVGDLARVGG 714
Query: 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780
F MRQYI ELMPLIVEALLDGAAV+KREVAV+TLGQVVQSTGYVITPYNEYPQLLGLLLK
Sbjct: 715 FAMRQYIPELMPLIVEALLDGAAVSKREVAVATLGQVVQSTGYVITPYNEYPQLLGLLLK 774
Query: 781 MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ-LSGSHGEVTRAASDSGQHIQPMDEF 839
+LNGELVWSTRREVLKVLGIMGALDPH HKRNQ+ L G HG+VTR+ASDS Q IQ MDEF
Sbjct: 775 LLNGELVWSTRREVLKVLGIMGALDPHLHKRNQKTLPGPHGDVTRSASDSSQQIQSMDEF 834
Query: 840 PMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPK 899
PMDLWPSFA+S+DYYSTVAINSLMRILRDPSLASYH KVVGSLMFIFKSMGLGCVPYLPK
Sbjct: 835 PMDLWPSFASSDDYYSTVAINSLMRILRDPSLASYHLKVVGSLMFIFKSMGLGCVPYLPK 894
Query: 900 VLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR 959
VLPDLFHTVRTC+D LKD+ITWKLGTLVSIVRQHIRKYLQ+L SLISE WS+F+LPA R
Sbjct: 895 VLPDLFHTVRTCEDSLKDFITWKLGTLVSIVRQHIRKYLQDLLSLISEFWSAFTLPAPAR 954
Query: 960 TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG 1019
G PVLHLV+QLCLALNDEFRT+LPVILP CIQVLSDAERCNDYTYVLDILHTLEVFG
Sbjct: 955 PGLGYPVLHLVEQLCLALNDEFRTYLPVILPGCIQVLSDAERCNDYTYVLDILHTLEVFG 1014
Query: 1020 GTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
GTLDEHMHLLLPALIR FKVDA VDIRRAAI+TLT LIPRVQVTGHISSLVHHLKLVLDG
Sbjct: 1015 GTLDEHMHLLLPALIRFFKVDASVDIRRAAIKTLTSLIPRVQVTGHISSLVHHLKLVLDG 1074
Query: 1080 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL 1139
KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLL K+RLRHKEFEEIEGRL+RREPLIL
Sbjct: 1075 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLQKYRLRHKEFEEIEGRLQRREPLIL 1134
Query: 1140 GSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQ-----------ASQRST 1188
G TA+Q+L+RR+PVEVISDPL+DV+ DPYEDG+DA K LRGHQ ASQRST
Sbjct: 1135 GITASQRLNRRLPVEVISDPLDDVEIDPYEDGSDAHK-LRGHQVNDGRLRTAGEASQRST 1193
Query: 1189 KEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKH 1248
KEDWAEWMRH SI+LLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCW+QLN TSQK
Sbjct: 1194 KEDWAEWMRHFSIQLLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWAQLNETSQKQ 1253
Query: 1249 LVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1308
LV++LEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK
Sbjct: 1254 LVRNLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1313
Query: 1309 EMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQ 1368
EMEFEGARS +MDANPVAVVEALIHINNQLHQHEAAVGILTYAQ+ LD QLKESWYEKLQ
Sbjct: 1314 EMEFEGARSKKMDANPVAVVEALIHINNQLHQHEAAVGILTYAQQHLDFQLKESWYEKLQ 1373
Query: 1369 RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE 1428
RWDDALKAYT KASQA++PH+VL+ATLG+MRCLAALA+W+ELN LCKE+WTPAEPAARLE
Sbjct: 1374 RWDDALKAYTAKASQATSPHLVLDATLGKMRCLAALAQWDELNILCKEFWTPAEPAARLE 1433
Query: 1429 MAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRR 1488
MAPMAANAAWNMGEWDQMAEYVSRLDDGDE+KLRGLGNTAA+ DGSS+GTFFRAVLLVRR
Sbjct: 1434 MAPMAANAAWNMGEWDQMAEYVSRLDDGDETKLRGLGNTAASSDGSSSGTFFRAVLLVRR 1493
Query: 1489 GK----------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPV 1526
GK VLESYERAYSNMVRVQQLSELE
Sbjct: 1494 GKYDEAREYVERARKCLATELAALVLESYERAYSNMVRVQQLSELE-------------- 1539
Query: 1527 AEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRIS 1586
ERI+G K NVEVWQALL VRALVLPP EDVETWLKFASLCRKSGRIS
Sbjct: 1540 -------------ERIEGAKSNVEVWQALLVVRALVLPPVEDVETWLKFASLCRKSGRIS 1586
Query: 1587 QARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646
QA+STLVKLLQYDPE S ENVRYHGPPQVM AYLKYQWSLGED KR+EAF RLQ LAMEL
Sbjct: 1587 QAKSTLVKLLQYDPEKSPENVRYHGPPQVMLAYLKYQWSLGEDSKRREAFIRLQNLAMEL 1646
Query: 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ 1706
SS P IQ +S T + +VPL+ARVYL LGSW+ +L PGL DESI +I+ A+ ATQ
Sbjct: 1647 SSAPSIQPVTPSSFTNGLNPSVPLLARVYLNLGSWQWSLSPGLVDESIKDILNAFTKATQ 1706
Query: 1707 CATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSL 1766
A KW KAWH WALFNTAVMSHYTLRG P VA QFV AVTGYFHSIACAA++KGVDDSL
Sbjct: 1707 YANKWAKAWHKWALFNTAVMSHYTLRGFPDVAAQFVAAAVTGYFHSIACAANSKGVDDSL 1766
Query: 1767 QDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSL 1826
QDILRLLTLWFNHGAT EVQ+AL+KGF+ VNINTWLVVLPQIIARIHSNN AVRELIQSL
Sbjct: 1767 QDILRLLTLWFNHGATAEVQMALKKGFSLVNINTWLVVLPQIIARIHSNNHAVRELIQSL 1826
Query: 1827 LVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGVLVDQS 1875
LVRIGQ+HPQALMYPLLVACKSISNLR+AAAQEVVDKVRQHSGVLVDQ+
Sbjct: 1827 LVRIGQNHPQALMYPLLVACKSISNLRKAAAQEVVDKVRQHSGVLVDQA 1875
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297852694|ref|XP_002894228.1| hypothetical protein ARALYDRAFT_474140 [Arabidopsis lyrata subsp. lyrata] gi|297340070|gb|EFH70487.1| hypothetical protein ARALYDRAFT_474140 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 3167 bits (8212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1557/1904 (81%), Positives = 1690/1904 (88%), Gaps = 33/1904 (1%)
Query: 1 MASTSQSLRYIGPPAPGAGGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGG 60
MAS SQS R+ GP A +GGGS D LNR++ADLC+ GNPKEGA LA RKH+EE RDL G
Sbjct: 16 MASPSQSHRFCGPSATASGGGSFDTLNRVIADLCSRGNPKEGAPLAFRKHVEEAVRDLSG 75
Query: 61 EAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120
EA SRFM+QLYDRI+ L+ES D AEN+GALRAIDEL ++ GENA+KVS+F+ YMRTVFE
Sbjct: 76 EASSRFMEQLYDRIANLIESTDVAENMGALRAIDELTEIGFGENATKVSRFAGYMRTVFE 135
Query: 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180
+KRD EILVLAS+VLGHLARAGGAMT+DEVEFQ+K A DWLR DRVEYRRFAAVLILKEM
Sbjct: 136 LKRDPEILVLASRVLGHLARAGGAMTSDEVEFQMKTAFDWLRVDRVEYRRFAAVLILKEM 195
Query: 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240
AENASTVFNVHV EFVDAIWVALRDP L VRERAVEALRACLRVIEKRETRWRVQWYYRM
Sbjct: 196 AENASTVFNVHVPEFVDAIWVALRDPQLQVRERAVEALRACLRVIEKRETRWRVQWYYRM 255
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS
Sbjct: 256 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 315
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYL 360
ITSLLPRIAHFLRDRFVTNYL ICMNHILTVLRIPAER SGFIALGEMAGALDGEL HYL
Sbjct: 316 ITSLLPRIAHFLRDRFVTNYLTICMNHILTVLRIPAERASGFIALGEMAGALDGELIHYL 375
Query: 361 PTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA 420
PTI SHLR+AIAPR+G+P LEA+ACVGNIA+AMG +E HVR LLD+MFS+GLS+TLVDA
Sbjct: 376 PTIMSHLRDAIAPRKGRPLLEAVACVGNIAKAMGSTVETHVRDLLDVMFSSGLSSTLVDA 435
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480
L+QIT+SIPSLLPT+QDRLLDCIS VLSKSHYSQA+P T IRG+ + + Q SD + SA
Sbjct: 436 LDQITISIPSLLPTVQDRLLDCISLVLSKSHYSQAKPPVTVIRGSTVGMSPQSSDPSCSA 495
Query: 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFT 540
VQLALQTLARFNFKGHDLLEFAR+SVV+YLDDED ATRKDAALCCC+L+ANS SG+ T
Sbjct: 496 QVQLALQTLARFNFKGHDLLEFARESVVVYLDDEDAATRKDAALCCCRLIANSLSGI--T 553
Query: 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADC 600
QFG+SRS R GG+RRRL+EE+VEKLL AVADADVTVR SIF SLYGN+ FDD+LAQAD
Sbjct: 554 QFGSSRSTRAGGRRRRLVEEIVEKLLRTAVADADVTVRKSIFVSLYGNQCFDDYLAQADS 613
Query: 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE 660
L+AIFA+LNDED DVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLE SSADNKCRE
Sbjct: 614 LTAIFASLNDEDLDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLELSSADNKCRE 673
Query: 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
ESAKLLGCL+RNCERL+ PY+AP+ KALVARL EGTG+NANN I++GVLVTVGDLARVGG
Sbjct: 674 ESAKLLGCLVRNCERLVLPYVAPVQKALVARLSEGTGVNANNNIVTGVLVTVGDLARVGG 733
Query: 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780
MRQYI ELMPLIVEAL+DGAAV KREVAVSTLGQVVQSTGYV+TPY EYP LLGLLLK
Sbjct: 734 LAMRQYIPELMPLIVEALMDGAAVAKREVAVSTLGQVVQSTGYVVTPYKEYPLLLGLLLK 793
Query: 781 MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ-LSGSHGEVTRAASDSGQHIQPMDEF 839
+L G+LVWSTRREVLKVLGIMGALDPH HKRNQQ LSGSHGEV R DSGQ I +DE
Sbjct: 794 LLKGDLVWSTRREVLKVLGIMGALDPHVHKRNQQSLSGSHGEVPRGTGDSGQPIPSIDEL 853
Query: 840 PMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPK 899
P++L PSFATSEDYYSTVAINSLMRILRD SL SYH++VV SLM IFKSMGLGCVPYLPK
Sbjct: 854 PVELRPSFATSEDYYSTVAINSLMRILRDASLLSYHKRVVRSLMIIFKSMGLGCVPYLPK 913
Query: 900 VLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR 959
VLP+LFHTVRT D+ LKD+ITW LGTLVSIVRQHIRKYL EL SL+SELWSSF+LP R
Sbjct: 914 VLPELFHTVRTSDENLKDFITWGLGTLVSIVRQHIRKYLPELLSLVSELWSSFTLPGPIR 973
Query: 960 TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG 1019
RGLPVLHL++ LCLALNDEFRT+LPVILPC IQVL DAER NDYTYV DILHTLEVFG
Sbjct: 974 PSRGLPVLHLLEHLCLALNDEFRTYLPVILPCFIQVLGDAERFNDYTYVPDILHTLEVFG 1033
Query: 1020 GTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
GTLDEHMHLLLPALIRLFKVDAPV IRR AI+TLTR+IP VQVTGHIS+LVHHLKLVLDG
Sbjct: 1034 GTLDEHMHLLLPALIRLFKVDAPVAIRRDAIKTLTRVIPCVQVTGHISALVHHLKLVLDG 1093
Query: 1080 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL 1139
KNDELRKDAVDALCCLAHALGEDFTIFI SIHKLLLKHRLRHKEFEEI R R+REPLI+
Sbjct: 1094 KNDELRKDAVDALCCLAHALGEDFTIFIESIHKLLLKHRLRHKEFEEIHSRWRKREPLIV 1153
Query: 1140 GSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLR------GHQASQRSTKEDWA 1193
+TA QQLSRR+PVEVI DP+ + + DP+E+GTD Q+ +ASQRSTKEDW
Sbjct: 1154 ATTATQQLSRRLPVEVIRDPVIENEIDPFEEGTDRNHQVNDGRLRTAGEASQRSTKEDWE 1213
Query: 1194 EWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSL 1253
EWMRH SIELLKESPSPALRTCA+LAQLQPFVGRELFAAGFVSCW+QLN +SQK LV+SL
Sbjct: 1214 EWMRHFSIELLKESPSPALRTCAKLAQLQPFVGRELFAAGFVSCWAQLNESSQKQLVRSL 1273
Query: 1254 EMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFE 1313
EMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCR FAKALHYKEMEFE
Sbjct: 1274 EMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRVFAKALHYKEMEFE 1333
Query: 1314 GARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDA 1373
G RS RMDANPVAVVEALIHINNQLHQHEAAVGILTYAQ+ LDVQLKESWYEKLQRWDDA
Sbjct: 1334 GPRSRRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQQHLDVQLKESWYEKLQRWDDA 1393
Query: 1374 LKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMA 1433
LKAYT KASQ SNPH+VLEATLG+MRCLAALARWEELNNLCKEYW+PAEP+ARLEMAPMA
Sbjct: 1394 LKAYTLKASQTSNPHLVLEATLGQMRCLAALARWEELNNLCKEYWSPAEPSARLEMAPMA 1453
Query: 1434 ANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK--- 1490
A AAWNMGEWDQMAEYVSRLDDGDE+KLRGL + ++GDGSSNGTFFRAVLLVRRGK
Sbjct: 1454 AQAAWNMGEWDQMAEYVSRLDDGDETKLRGLASPVSSGDGSSNGTFFRAVLLVRRGKYDE 1513
Query: 1491 -------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRR 1531
VLESYERAYSNMVRVQQLSELEEVI+Y TLPVGN +AE RR
Sbjct: 1514 AREYVERARKCLATELAALVLESYERAYSNMVRVQQLSELEEVIEYYTLPVGNTIAEERR 1573
Query: 1532 AIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARST 1591
A+IRNMWT+RIQG+KRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQA+ST
Sbjct: 1574 ALIRNMWTQRIQGSKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQAKST 1633
Query: 1592 LVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPV 1651
L+KLL +DPE S EN++YHGPPQVM YLKYQWSLGE+ KRKEAF +LQ L ELSS P
Sbjct: 1634 LLKLLPFDPEVSPENMQYHGPPQVMLGYLKYQWSLGEERKRKEAFTKLQILTRELSSVPH 1693
Query: 1652 IQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711
QS S+ ++ NVPL+ARV LKLG+W+ AL GL+D SI EI A+ +T+ A KW
Sbjct: 1694 SQSDILASMVSSKGANVPLLARVNLKLGTWQWALSSGLNDGSIQEIRDAFDKSTRYAPKW 1753
Query: 1712 GKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILR 1771
KAWH+WALFNTAVMSHY RG +A QFVV AVTGYF+SIACAA+AKGVDDSLQDILR
Sbjct: 1754 AKAWHTWALFNTAVMSHYISRG--QIASQFVVSAVTGYFYSIACAANAKGVDDSLQDILR 1811
Query: 1772 LLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIG 1831
LLTLWFNHGAT +VQ AL+ GF+HVNINTWLVVLPQIIARIHSNNRAVRELIQSLL+RIG
Sbjct: 1812 LLTLWFNHGATADVQTALKTGFSHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLIRIG 1871
Query: 1832 QSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGVLVDQS 1875
++HPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSG LVDQ+
Sbjct: 1872 ENHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGALVDQA 1915
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1880 | ||||||
| TAIR|locus:2031090 | 2481 | TOR "target of rapamycin" [Ara | 0.803 | 0.608 | 0.785 | 0.0 | |
| ASPGD|ASPL0000006879 | 2385 | torA [Emericella nidulans (tax | 0.451 | 0.355 | 0.378 | 4.9e-308 | |
| POMBASE|SPBC216.07c | 2337 | tor2 "phosphatidylinositol kin | 0.530 | 0.427 | 0.384 | 2.8e-304 | |
| UNIPROTKB|E1BFB4 | 2551 | MTOR "Uncharacterized protein" | 0.747 | 0.551 | 0.367 | 1.9e-298 | |
| UNIPROTKB|P42345 | 2549 | MTOR "Serine/threonine-protein | 0.747 | 0.551 | 0.367 | 3e-298 | |
| UNIPROTKB|E2R2L2 | 2550 | MTOR "Uncharacterized protein" | 0.747 | 0.551 | 0.367 | 1e-297 | |
| RGD|68371 | 2549 | Mtor "mechanistic target of ra | 0.747 | 0.551 | 0.366 | 1.3e-297 | |
| MGI|MGI:1928394 | 2549 | Mtor "mechanistic target of ra | 0.748 | 0.552 | 0.365 | 1.3e-297 | |
| UNIPROTKB|F1RHR8 | 2551 | MTOR "Uncharacterized protein" | 0.748 | 0.551 | 0.366 | 1.7e-297 | |
| UNIPROTKB|F1NUX4 | 2455 | MTOR "Uncharacterized protein" | 0.742 | 0.568 | 0.370 | 2.8e-293 |
| TAIR|locus:2031090 TOR "target of rapamycin" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 6045 (2133.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 1195/1522 (78%), Positives = 1297/1522 (85%)
Query: 1 MASTSQSLRYIXXXXXXXXXXSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGG 60
MAS SQS R+ S D LNR++ADLC+ GNPKEGA LA RKH+EE RDL G
Sbjct: 16 MASPSQSHRFCGPSATASGGGSFDTLNRVIADLCSRGNPKEGAPLAFRKHVEEAVRDLSG 75
Query: 61 EAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120
EA SRFM+QLYDRI+ L+ES D AEN+GALRAIDEL ++ GENA+KVS+F+ YMRTVFE
Sbjct: 76 EASSRFMEQLYDRIANLIESTDVAENMGALRAIDELTEIGFGENATKVSRFAGYMRTVFE 135
Query: 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180
+KRD EILVLAS+VLGHLARAGGAMT+DEVEFQ+K A DWLR DRVEYRRFAAVLILKEM
Sbjct: 136 LKRDPEILVLASRVLGHLARAGGAMTSDEVEFQMKTAFDWLRVDRVEYRRFAAVLILKEM 195
Query: 181 AENASTVFNVHVAEFVDAIWVALRDPTXXXXXXXXXXXXXXXXXIEKRETRWRVQWYYRM 240
AENASTVFNVHV EFVDAIWVALRDP IEKRETRWRVQWYYRM
Sbjct: 196 AENASTVFNVHVPEFVDAIWVALRDPQLQVRERAVEALRACLRVIEKRETRWRVQWYYRM 255
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS
Sbjct: 256 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 315
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYL 360
ITSLLPRIAHFLRDRFVTNYL ICMNHILTVLRIPAER SGFIALGEMAGALDGEL HYL
Sbjct: 316 ITSLLPRIAHFLRDRFVTNYLTICMNHILTVLRIPAERASGFIALGEMAGALDGELIHYL 375
Query: 361 PTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA 420
PTI SHLR+AIAPR+G+P LEA+ACVGNIA+AMG +E HVR LLD+MFS+ LS+TLVDA
Sbjct: 376 PTIMSHLRDAIAPRKGRPLLEAVACVGNIAKAMGSTVETHVRDLLDVMFSSSLSSTLVDA 435
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480
L+QIT+SIPSLLPT+QDRLLDCIS VLSKSHYSQA+P T +RG+ + + Q SD + SA
Sbjct: 436 LDQITISIPSLLPTVQDRLLDCISLVLSKSHYSQAKPPVTIVRGSTVGMAPQSSDPSCSA 495
Query: 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFT 540
VQLALQTLARFNFKGHDLLEFAR+SVV+YLDDED ATRKDAALCCC+L+ANS SG+ T
Sbjct: 496 QVQLALQTLARFNFKGHDLLEFARESVVVYLDDEDAATRKDAALCCCRLIANSLSGI--T 553
Query: 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADC 600
QFG+SRS R GG+RRRL+EE+VEKLL AVADADVTVR SIF +L+GN+ FDD+LAQAD
Sbjct: 554 QFGSSRSTRAGGRRRRLVEEIVEKLLRTAVADADVTVRKSIFVALFGNQCFDDYLAQADS 613
Query: 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE 660
L+AIFA+LNDED DVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLE S ADNKCRE
Sbjct: 614 LTAIFASLNDEDLDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLELS-ADNKCRE 672
Query: 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
ESAKLLGCL+RNCERLI PY+AP+ KALVARL EGTG+NANN I++GVLVTVGDLARVGG
Sbjct: 673 ESAKLLGCLVRNCERLILPYVAPVQKALVARLSEGTGVNANNNIVTGVLVTVGDLARVGG 732
Query: 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQXXXXXXX 780
MRQYI ELMPLIVEAL+DGAAV KREVAVSTLGQVVQSTGYV+TPY EYP
Sbjct: 733 LAMRQYIPELMPLIVEALMDGAAVAKREVAVSTLGQVVQSTGYVVTPYKEYPLLLGLLLK 792
Query: 781 XXXXXXVWSTRREVLKVLGIMGALDPHAHKRNQQ-LSGSHGEVTRAASDSGQHIQPMDEF 839
VWSTRREVLKVLGIMGALDPH HKRNQQ LSGSHGEV R DSGQ I +DE
Sbjct: 793 LLKGDLVWSTRREVLKVLGIMGALDPHVHKRNQQSLSGSHGEVPRGTGDSGQPIPSIDEL 852
Query: 840 PMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPK 899
P++L PSFATSEDYYSTVAINSLMRILRD SL SYH++VV SLM IFKSMGLGCVPYLPK
Sbjct: 853 PVELRPSFATSEDYYSTVAINSLMRILRDASLLSYHKRVVRSLMIIFKSMGLGCVPYLPK 912
Query: 900 VLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR 959
VLP+LFHTVRT D+ LKD+ITW LGTLVSIVRQHIRKYL EL SL+SELWSSF+LP R
Sbjct: 913 VLPELFHTVRTSDENLKDFITWGLGTLVSIVRQHIRKYLPELLSLVSELWSSFTLPGPIR 972
Query: 960 TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG 1019
RGLPVLHL++ LCLALNDEFRT+LPVILPC IQVL DAER NDYTYV DILHTLEVFG
Sbjct: 973 PSRGLPVLHLLEHLCLALNDEFRTYLPVILPCFIQVLGDAERFNDYTYVPDILHTLEVFG 1032
Query: 1020 GTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
GTLDEHMHLLLPALIRLFKVDAPV IRR AI+TLTR+IP VQVTGHIS+LVHHLKLVLDG
Sbjct: 1033 GTLDEHMHLLLPALIRLFKVDAPVAIRRDAIKTLTRVIPCVQVTGHISALVHHLKLVLDG 1092
Query: 1080 KNDELRKDAVDALCCLAHALGEDFTIFIPSIXXXXXXXXXXXXEFEEIEGRLRRREPLIL 1139
KNDELRKDAVDALCCLAHALGEDFTIFI SI EFEEI R RRREPLI+
Sbjct: 1093 KNDELRKDAVDALCCLAHALGEDFTIFIESIHKLLLKHRLRHKEFEEIHARWRRREPLIV 1152
Query: 1140 GSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLR-GH-----QASQRSTKEDWA 1193
+TA QQLSRR+PVEVI DP+ + + DP+E+GTD Q+ G +ASQRSTKEDW
Sbjct: 1153 ATTATQQLSRRLPVEVIRDPVIENEIDPFEEGTDRNHQVNDGRLRTAGEASQRSTKEDWE 1212
Query: 1194 EWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSL 1253
EWMRH SIELLKESPSPALRTCA+LAQLQPFVGRELFAAGFVSCW+QLN +SQK LV+SL
Sbjct: 1213 EWMRHFSIELLKESPSPALRTCAKLAQLQPFVGRELFAAGFVSCWAQLNESSQKQLVRSL 1272
Query: 1254 EMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFE 1313
EMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCR FAKALHYKEMEFE
Sbjct: 1273 EMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRVFAKALHYKEMEFE 1332
Query: 1314 GARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDA 1373
G RS RMDANPVAVVEALIHINNQLHQHEAAVGILTYAQ+ LDVQLKESWYEKLQRWDDA
Sbjct: 1333 GPRSKRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQQHLDVQLKESWYEKLQRWDDA 1392
Query: 1374 LKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTXXXXXXXXXXXXXX 1433
LKAYT KASQ +NPH+VLEATLG+MRCLAALARWEELNNLCKEYW+
Sbjct: 1393 LKAYTLKASQTTNPHLVLEATLGQMRCLAALARWEELNNLCKEYWSPAEPSARLEMAPMA 1452
Query: 1434 XXXXWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLE 1493
WNMGEWDQMAEYVSRLDDGDE+KLRGL + ++GDGSSNGTFFRAVLLVRR K E
Sbjct: 1453 AQAAWNMGEWDQMAEYVSRLDDGDETKLRGLASPVSSGDGSSNGTFFRAVLLVRRAKYDE 1512
Query: 1494 SYERAYSNMVRVQQLSELEEVI 1515
+ R Y R +EL ++
Sbjct: 1513 A--REYVERARKCLATELAALV 1532
|
|
| ASPGD|ASPL0000006879 torA [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 1416 (503.5 bits), Expect = 4.9e-308, Sum P(3) = 4.9e-308
Identities = 345/912 (37%), Positives = 497/912 (54%)
Query: 849 TSEDYYSTVAINSLMR-ILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHT 907
++E+YY TV I++LM+ ILR+ SLA YH V+ +++ IFK++GL CVP+L +++P
Sbjct: 812 SNEEYYPTVVIHTLMQNILRENSLAQYHSAVIDAIVTIFKTLGLKCVPFLGQIIPGFISV 871
Query: 908 VR-TCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELW-SSFSLPATNRTYRGLP 965
+R + L+ Y ++ LV+IVRQHIR +L E+ +I E W +S+ + AT
Sbjct: 872 IRGSPSSRLESYFN-QMAILVNIVRQHIRAFLPEIIEVIREFWDTSYQVQAT-------- 922
Query: 966 VLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEH 1025
+L LV + +L EF+ +L ++P + L + + ILH+ VFG + +E+
Sbjct: 923 ILSLVDAIAKSLEGEFKKYLANLIPPMLDTL-EKDNTPRRQPSERILHSFLVFGSSGEEY 981
Query: 1026 MHLLLPALIRLF-KVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDEL 1084
MHL++P+++RLF + P IR++AI++LT+L +V V+ S +VH L V+ G + L
Sbjct: 982 MHLIVPSIVRLFDRSQNPASIRKSAIDSLTKLSRQVNVSDFASLIVHSLSRVVAGNDRML 1041
Query: 1085 RKDAVDALCCLAHALGEDFTIFIPSIXXXXXXXXXXXXEFEEIEGRLRRREPLILGSTAA 1144
R+ A+D +C L LG+DF +I + ++ + +L++ +PL
Sbjct: 1042 RQAAMDCICSLIFQLGQDFNHYIHLLNKVLKHHQVNHVNYQILVTKLQKGDPL------P 1095
Query: 1145 QQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQASQRSTKEDWAEWMRHLSIELL 1204
Q L+ ++D N + + + Q ASQ+ST+EDW EW+R S+ELL
Sbjct: 1096 QDLNPDESYAPLADDANYAEIGQKKMVVNQQHLKNAWDASQKSTREDWQEWIRRFSVELL 1155
Query: 1205 KESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPP 1264
KESPSPALR CA LA + + R+LF A FVSCW++L Q+ LV+S+E A +SPNIPP
Sbjct: 1156 KESPSPALRACASLAGIYQPLARDLFNAAFVSCWTELYDQYQEELVRSIEKALTSPNIPP 1215
Query: 1265 EILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANP 1324
EIL LLNLAEFMEHD+K LPIDIR LG A KC AFAKALHYKE+EFE D N
Sbjct: 1216 EILQILLNLAEFMEHDDKALPIDIRTLGKYAAKCHAFAKALHYKELEFE------QDQNS 1269
Query: 1325 VAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQA 1384
AV EALI INNQL Q +AA+GIL AQ DV+LKE+W+EKLQRW++AL AY K +
Sbjct: 1270 GAV-EALITINNQLQQSDAAIGILRKAQAYRDVELKETWFEKLQRWEEALAAY--KRREK 1326
Query: 1385 SNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTXXXXXXXXXXXXXXXXXXWNMGEWD 1444
+P T+G+MRCL AL W+ L++L +E W W G+W+
Sbjct: 1327 IDPDS-FGITMGKMRCLHALGEWKVLSDLAQEKWNQASLEHRKSIAPLAAAAAWGRGQWE 1385
Query: 1445 QMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFF----RAVLLVRRGKVL-ESYERAY 1499
M Y+ + + + A + + + R L +L ESY RAY
Sbjct: 1386 LMDSYLGVMKEQSPDRSFFGAILAIHRNQFDEAIMYIEKARNGLDTELSALLGESYNRAY 1445
Query: 1500 SNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQXXXXXX 1559
+ +VRVQ L+ELEE+I Y VG+P R+ +R W R+ G ++NVEVWQ
Sbjct: 1446 NVVVRVQMLAELEEIITY-KQNVGDPE---RQEAMRQTWNRRLLGCQQNVEVWQRMLKVR 1501
Query: 1560 XXXXPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAY 1619
P E+++ W+KFA+LCRKS R+ A +L L P+ + R PP+V YA
Sbjct: 1502 ALVTTPRENLDMWIKFANLCRKSNRMGLAERSLASLETVIPD-GNGGTRTISPPEVTYAR 1560
Query: 1620 LKYQWSLGED-----LKRK------EAFARLQTLAMELSSCPVIQXXXXXXXXXXXXXNV 1668
LK+ W+ G + R+ E F R L S I
Sbjct: 1561 LKFSWATGRQREALHMLREFTANLTEDFTRFNALVASQSDHNGINGVNGIAEGNHTDIMA 1620
Query: 1669 ------------PLIARVYLKLGSWKRALPPG-LDDESIPEIIAAYRNATQCATKWGKAW 1715
L+A+ YL+LG W+ AL G E + E++ AY AT+ KAW
Sbjct: 1621 LRERVGDVNKFRKLLAKSYLRLGEWQTALQRGDWRPEHVREVLNAYSAATRYNRDSYKAW 1680
Query: 1716 HSWALFNTAVMS 1727
HSWAL N V++
Sbjct: 1681 HSWALANFEVVT 1692
|
|
| POMBASE|SPBC216.07c tor2 "phosphatidylinositol kinase Tor2" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1783 (632.7 bits), Expect = 2.8e-304, Sum P(2) = 2.8e-304
Identities = 401/1043 (38%), Positives = 599/1043 (57%)
Query: 849 TSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTV 908
+S++YY TV I +LM IL+DPSL +H V+ ++M+IFK+MGL C P+L +++P+ +
Sbjct: 798 SSDEYYPTVVITALMSILKDPSLTIHHTAVIQAVMYIFKTMGLRCAPFLSQIIPEFIAVM 857
Query: 909 RTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLH 968
RTC + ++ +L LV IVRQHIR +L +LF LI + W+ P +N + +L
Sbjct: 858 RTCPTNILEFYFQQLSILVLIVRQHIRSFLPDLFKLIKDFWN----PHSNLQFT---ILS 910
Query: 969 LVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHL 1028
L++ L A+ EF+ +LP +L +Q+ D++ D +LH VFG TL ++ H+
Sbjct: 911 LIESLARAMQGEFKPYLPSLLVMMLQIF-DSDVSVDSVSTKKVLHAFIVFGDTLADYFHM 969
Query: 1029 LLPALIRLF-KVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKD 1087
LL ++RL+ + D + I+ + + T+ RL + ++ + S ++H + +L N L +
Sbjct: 970 LLDPILRLYERNDVSIGIKESIMITIGRLSMVINLSEYASRIIHPVMRMLSCNNASLIRV 1029
Query: 1088 AVDALCCLAHALGEDFTIFIPSIXXXXXXXXXXXXEFEEIEGRLRRREPLILGSTAAQQL 1147
++D +C L + L DF IFIP I + + + + +PL + ++
Sbjct: 1030 SMDTVCALIYQLNVDFAIFIPMIDKCLKMNGVTHETYSILVEQFLQEQPLPIKLNPYEKY 1089
Query: 1148 SRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGH-QASQRSTKEDWAEWMRHLSIELLKE 1206
+ ++V++ D+ S Q+ LR +ASQRSTK+DW EW+R L + LL+E
Sbjct: 1090 DKP-KLDVVASAA-DITSKKLPVN---QEILRNAWEASQRSTKDDWQEWIRRLGVALLRE 1144
Query: 1207 SPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEI 1266
SPS ALR CA LA + R+LF A FVSCWS+L Q+ LV+S+E+A +SP+I PEI
Sbjct: 1145 SPSHALRACAALAAAYQPLARDLFNASFVSCWSELYDHFQEELVKSIEIALTSPHISPEI 1204
Query: 1267 LATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVA 1326
+ LLNLAEFMEHD+KPLPIDIR LGA A KC AFAKALHYKE+EF + V
Sbjct: 1205 IQILLNLAEFMEHDDKPLPIDIRTLGAYAAKCHAFAKALHYKELEF--IEEELVTKPSVD 1262
Query: 1327 VVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYTNK-ASQAS 1385
+EALI INNQL Q +AA+GIL +AQ+ + LKE+WYEKLQRW+DAL AY + A+ A
Sbjct: 1263 TIEALISINNQLQQPDAAIGILKHAQQHDKMNLKETWYEKLQRWEDALSAYEKREAAGAG 1322
Query: 1386 NPHIVLEATLGRMRCLAALARWEELNNLCKEYWTXXXXXXXXXXXXXXXXXXWNMGEWDQ 1445
N E T+G++RCL AL W+ L+ L +E W W +G+W+Q
Sbjct: 1323 N----FEITMGKLRCLHALGEWDRLSQLAQENWIHAGHDARRYIAPLSVAAAWGLGQWEQ 1378
Query: 1446 MAEYVS--RLDDGDESKLRGLG--NTAANGDGSSNGTFFRAVLLVRRGKVL-ESYERAYS 1500
M EY+S + + D++ + + + + +S T R +L ++ ESY RAYS
Sbjct: 1379 MDEYISVMKSESPDKAFFNAIVALHRSQFEEAASYITRARDLLDTELTALVGESYNRAYS 1438
Query: 1501 NMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQXXXXXXX 1560
VRVQ LSELEE+I Y P R +I+ W R++G +RNV+VWQ
Sbjct: 1439 VAVRVQMLSELEEIITYKKAE-DKPEV---REMIKKTWVRRLKGCQRNVDVWQRMLRIRS 1494
Query: 1561 XXXPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYL 1620
P +++E W+KFA+LCRKSGRIS A+ +L LL+ D + V P ++YA L
Sbjct: 1495 LVISPRDNMEMWIKFANLCRKSGRISLAKKSLNLLLEDDENLDNSLVLKKTHPSIVYANL 1554
Query: 1621 KYQWSLGEDLKRKEAFARLQT-LAMELSSCPVIQXXXXXXXXXXXXXNVP----LIARVY 1675
K+ W++ + K + + L +++ P + + L+AR Y
Sbjct: 1555 KFLWAVDDKRKALNSMQEFTSQLISDINVDPALFVQSTSVNTQKSQEEIQYYFHLLARCY 1614
Query: 1676 LKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS--HYTLRG 1733
K G W++ + + S ++ +Y ATQ +KW KAWHSWAL N + +
Sbjct: 1615 HKQGQWQQEIENNWSEGSFDGVLQSYMYATQFDSKWYKAWHSWALANFEAVKFLEQSEEQ 1674
Query: 1734 LPSVA-PQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKG 1792
+PS A Q+++ AV G+F SIA + KG +LQD LRLL LWF G V L G
Sbjct: 1675 IPSAAYEQYIIPAVKGFFKSIALS---KG---NLQDTLRLLNLWFKFGNNSNVINTLNVG 1728
Query: 1793 FAHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNL 1852
+ VNI+ WL V+PQ+IARIH+++ +VR+ + LL +G++HPQAL+YPL VA KS S+
Sbjct: 1729 ISTVNIDIWLDVIPQLIARIHASSLSVRKSVHQLLSDVGRAHPQALVYPLTVAAKSQSSA 1788
Query: 1853 RRAAAQEVVDKVRQHSGVLVDQS 1875
R+ AA ++D ++ HS LV+Q+
Sbjct: 1789 RQNAALAIMDSLKTHSPRLVEQA 1811
|
|
| UNIPROTKB|E1BFB4 MTOR "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 2277 (806.6 bits), Expect = 1.9e-298, Sum P(3) = 1.9e-298
Identities = 549/1492 (36%), Positives = 828/1492 (55%)
Query: 273 EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFV-TNYLKICMNHILTV 331
+ M ++ +V + VL+ ++ L++++I +LLPR+A F F T YL+ MNH+L+
Sbjct: 364 DLMEEKFDQVCQWVLKCRNSKNSLIQMTILNLLPRLAAFRPSAFTDTQYLQDTMNHVLSC 423
Query: 332 LRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR-----RGKP-SLEA--L 383
++ ER + F ALG ++ A+ E YLP + +R A+ P+ R K ++A
Sbjct: 424 VKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDIIRAALPPKDFAHKRQKAMQVDATVF 483
Query: 384 ACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCI 443
C+ +ARAMGP ++ ++ LL+ M + GLS L L ++ IP L IQD LL +
Sbjct: 484 TCISMLARAMGPGIQQDIKELLEPMLAVGLSPALTAVLYDLSRQIPQLKKDIQDGLLKML 543
Query: 444 SFVLSKS---HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLL 500
S VL H + A + + + SD+ GS + LAL+TL F F+GH L
Sbjct: 544 SLVLMHKPLRHPGMPKGLAHQLASPGLTTLPEASDV-GS--ITLALRTLGSFEFEGHSLT 600
Query: 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560
+F R +L+ E K R +AA C +L+ S +S S++ +++ +
Sbjct: 601 QFVRHCADHFLNSEHKEIRMEAARTCSRLLTPSVHLISGHAHVVSQT------AVQVVAD 654
Query: 561 LVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAI 620
++ KLL+ + D D +R+ + +SL + FD LAQA+ L A+F ALND+ F++RE AI
Sbjct: 655 VLSKLLVVGITDPDPDIRYCVLASL--DERFDAHLAQAENLQALFVALNDQVFEIRELAI 712
Query: 621 SVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680
GRLS NPA+V+P LR+ LIQ+LT LE S + +E+SA++LG L+ N RLIRPY
Sbjct: 713 CTVGRLSSMNPAFVMPFLRKMLIQILTELEHSGI-GRIKEQSARMLGHLVSNAPRLIRPY 771
Query: 681 IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD 740
+ PI KAL+ +L + + N G+I+ VL T+G+LA+V G MR+++ EL +I++ L D
Sbjct: 772 MEPILKALILKLKDPDP-DPNPGVINNVLATIGELAQVSGLEMRKWVDELFIIIMDMLQD 830
Query: 741 GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQXXXXXXXXXXXXXVWSTRREVLKVLGI 800
+ + KR+VA+ TLGQ+V STGYV+ PY +YP TRRE ++VLG+
Sbjct: 831 SSLLAKRQVALWTLGQLVASTGYVVEPYRKYPTLLEVLLNFLKTEQNQGTRREAIRVLGL 890
Query: 801 MGALDPHAHKRNQQL---SGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTV 857
+GALDP+ HK N + S V+ + S S Q M + +++Y V
Sbjct: 891 LGALDPYKHKVNIGMIDQSRDASAVSLSESKSSQDSSDYSTSEMLVNMGNLPLDEFYPAV 950
Query: 858 AINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKD 917
++ +LMRI RD SL+ +H VV ++ FIFKS+GL CV +LP+V+P + +R CD +++
Sbjct: 951 SMVALMRIFRDQSLSHHHTMVVQAITFIFKSLGLKCVQFLPQVMPTFLNVIRVCDGAIRE 1010
Query: 918 YITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLAL 977
++ +LG LVS V+ HIR Y+ E+ +L+ E W N + + +L L++Q+ +AL
Sbjct: 1011 FLFQQLGMLVSFVKSHIRPYMDEIVTLMREFW------VMNTSIQSTIIL-LIEQIVVAL 1063
Query: 978 NDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLF 1037
EF+ +LP ++P ++V + + + +L +++FG LD+++HLLLP +++LF
Sbjct: 1064 GGEFKLYLPQLIPHMLRVFMH-DNSSGRIVSIKLLAAIQLFGANLDDYLHLLLPPIVKLF 1122
Query: 1038 KV-DAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLA 1096
+AP+ R+AA+ET+ RL + T + S ++H + LD ++ ELR A+D L L
Sbjct: 1123 DAPEAPLPSRKAALETVDRLTESLDFTDYASRIIHPIVRTLD-QSPELRSTAMDTLSSLV 1181
Query: 1097 HALGEDFTIFIPSIXXXXXXXXXXXXEFEEIEGRLRRREPLILGSTAAQQLSRRVPVEVI 1156
LG+ + IFIP + ++ + R+ + L R+
Sbjct: 1182 FQLGKKYQIFIPMVNKVLVRHRINHQRYDVLICRIVKGYTLADEEEDPLIYQHRMLRSGQ 1241
Query: 1157 SDPL--NDVDSDPYEDGTDAQKQL-RGHQASQRSTKEDWAEWMRHLSIELLKESPSPALR 1213
D L V++ P + + L + A++R +K+DW EW+R LS+ELLK+S SP+LR
Sbjct: 1242 GDALASGPVETGPMKKLHVSTINLQKAWGAARRVSKDDWLEWLRRLSLELLKDSSSPSLR 1301
Query: 1214 TCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNL 1273
+C LAQ + R+LF A FVSCWS+LN Q L++S+E+A +S +I E+ TLLNL
Sbjct: 1302 SCWALAQAYNPMARDLFNAAFVSCWSELNEDQQDELIRSIELALTSQDIA-EVTQTLLNL 1360
Query: 1274 AEFMEHDEK-PLPI-D---IRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVV 1328
AEFMEH +K PLP+ D I LLG A KCRA+AKALHYKE+EF+ + P A++
Sbjct: 1361 AEFMEHSDKGPLPLRDDNGIVLLGERAAKCRAYAKALHYKELEFQKGPT------P-AIL 1413
Query: 1329 EALIHINNQLHQHEAAVGILTYAQKEL-DVQLKESWYEKLQRWDDALKAYTNKA-SQASN 1386
E+LI INN+L Q EAA G+L YA K +++++ +WYEKL W+DAL AY K + +
Sbjct: 1414 ESLISINNKLQQPEAAAGVLEYAMKHFGELEIQATWYEKLHEWEDALVAYDKKMDTNKDD 1473
Query: 1387 PHIVLEATLGRMRCLAALARWEELNNLCKEYWTXXXXXXXXXXXXXXXXXXWNMGEWDQM 1446
P ++L GRMRCL AL W +L+ C E WT W +G+WD M
Sbjct: 1474 PELML----GRMRCLEALGEWGQLHQQCCEKWTLVNDETQAKMARMAAAAAWGLGQWDSM 1529
Query: 1447 AEYVSRL--DDGDESKLRGLGNTAANGD--GSSNGTFFRAV-LLVRRGKVL--ESYERAY 1499
EY + D D + R + A + D + +A LL + ESY RAY
Sbjct: 1530 EEYTCMIPRDTHDGAFYRAV--LALHQDLFSLAQQCIDKARDLLDAELTAMAGESYSRAY 1587
Query: 1500 SNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQXXXXXX 1559
MV LSELEEVI Y +P RR IIR +W ER+QG +R VE WQ
Sbjct: 1588 GAMVSCHMLSELEEVIQYKLVPE-------RREIIRQIWWERLQGCQRIVEDWQKILMVR 1640
Query: 1560 XXXXPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDP--ETSHENVRYHGPPQVMY 1617
P ED+ TWLK+ASLC KSGR++ A TLV LL DP + H H PQV Y
Sbjct: 1641 SLVVSPHEDMRTWLKYASLCGKSGRLALAHKTLVLLLGVDPSRQLDHPLPTVH--PQVTY 1698
Query: 1618 AYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQXXXXXXXXXXXXXNVPLIARVYLK 1677
AY+K W + ++ +AF +Q + Q L+AR +LK
Sbjct: 1699 AYMKNMW---KSARKIDAFQHMQHFVQTMQQ--QAQHAIATEDQQHKQELHKLMARCFLK 1753
Query: 1678 LGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHY 1729
LG W+ L G+++ +IP+++ Y AT+ W KAWH+WA+ N + HY
Sbjct: 1754 LGEWQLNLQ-GINESTIPKVLQYYSAATEHDRSWYKAWHAWAVMNFEAVLHY 1804
|
|
| UNIPROTKB|P42345 MTOR "Serine/threonine-protein kinase mTOR" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 2275 (805.9 bits), Expect = 3.0e-298, Sum P(3) = 3.0e-298
Identities = 549/1492 (36%), Positives = 827/1492 (55%)
Query: 273 EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFV-TNYLKICMNHILTV 331
+ M ++ +V + VL+ ++ L++++I +LLPR+A F F T YL+ MNH+L+
Sbjct: 364 DLMEEKFDQVCQWVLKCRNSKNSLIQMTILNLLPRLAAFRPSAFTDTQYLQDTMNHVLSC 423
Query: 332 LRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR-----RGKP-SLEA--L 383
++ ER + F ALG ++ A+ E YLP + +R A+ P+ R K ++A
Sbjct: 424 VKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDIIRAALPPKDFAHKRQKAMQVDATVF 483
Query: 384 ACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCI 443
C+ +ARAMGP ++ ++ LL+ M + GLS L L ++ IP L IQD LL +
Sbjct: 484 TCISMLARAMGPGIQQDIKELLEPMLAVGLSPALTAVLYDLSRQIPQLKKDIQDGLLKML 543
Query: 444 SFVLSKS---HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLL 500
S VL H + A + + + SD+ GS + LAL+TL F F+GH L
Sbjct: 544 SLVLMHKPLRHPGMPKGLAHQLASPGLTTLPEASDV-GS--ITLALRTLGSFEFEGHSLT 600
Query: 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560
+F R +L+ E K R +AA C +L+ S +S S++ +++ +
Sbjct: 601 QFVRHCADHFLNSEHKEIRMEAARTCSRLLTPSIHLISGHAHVVSQT------AVQVVAD 654
Query: 561 LVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAI 620
++ KLL+ + D D +R+ + +SL + FD LAQA+ L A+F ALND+ F++RE AI
Sbjct: 655 VLSKLLVVGITDPDPDIRYCVLASL--DERFDAHLAQAENLQALFVALNDQVFEIRELAI 712
Query: 621 SVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680
GRLS NPA+V+P LR+ LIQ+LT LE S + +E+SA++LG L+ N RLIRPY
Sbjct: 713 CTVGRLSSMNPAFVMPFLRKMLIQILTELEHSGI-GRIKEQSARMLGHLVSNAPRLIRPY 771
Query: 681 IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD 740
+ PI KAL+ +L + + N G+I+ VL T+G+LA+V G MR+++ EL +I++ L D
Sbjct: 772 MEPILKALILKLKDPDP-DPNPGVINNVLATIGELAQVSGLEMRKWVDELFIIIMDMLQD 830
Query: 741 GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQXXXXXXXXXXXXXVWSTRREVLKVLGI 800
+ + KR+VA+ TLGQ+V STGYV+ PY +YP TRRE ++VLG+
Sbjct: 831 SSLLAKRQVALWTLGQLVASTGYVVEPYRKYPTLLEVLLNFLKTEQNQGTRREAIRVLGL 890
Query: 801 MGALDPHAHKRNQQL---SGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTV 857
+GALDP+ HK N + S V+ + S S Q M + +++Y V
Sbjct: 891 LGALDPYKHKVNIGMIDQSRDASAVSLSESKSSQDSSDYSTSEMLVNMGNLPLDEFYPAV 950
Query: 858 AINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKD 917
++ +LMRI RD SL+ +H VV ++ FIFKS+GL CV +LP+V+P + +R CD +++
Sbjct: 951 SMVALMRIFRDQSLSHHHTMVVQAITFIFKSLGLKCVQFLPQVMPTFLNVIRVCDGAIRE 1010
Query: 918 YITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLAL 977
++ +LG LVS V+ HIR Y+ E+ +L+ E W N + + +L L++Q+ +AL
Sbjct: 1011 FLFQQLGMLVSFVKSHIRPYMDEIVTLMREFW------VMNTSIQSTIIL-LIEQIVVAL 1063
Query: 978 NDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLF 1037
EF+ +LP ++P ++V + + +L +++FG LD+++HLLLP +++LF
Sbjct: 1064 GGEFKLYLPQLIPHMLRVFMH-DNSPGRIVSIKLLAAIQLFGANLDDYLHLLLPPIVKLF 1122
Query: 1038 KV-DAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLA 1096
+AP+ R+AA+ET+ RL + T + S ++H + LD ++ ELR A+D L L
Sbjct: 1123 DAPEAPLPSRKAALETVDRLTESLDFTDYASRIIHPIVRTLD-QSPELRSTAMDTLSSLV 1181
Query: 1097 HALGEDFTIFIPSIXXXXXXXXXXXXEFEEIEGRLRRREPLILGSTAAQQLSRRVPVEVI 1156
LG+ + IFIP + ++ + R+ + L R+
Sbjct: 1182 FQLGKKYQIFIPMVNKVLVRHRINHQRYDVLICRIVKGYTLADEEEDPLIYQHRMLRSGQ 1241
Query: 1157 SDPL--NDVDSDPYEDGTDAQKQL-RGHQASQRSTKEDWAEWMRHLSIELLKESPSPALR 1213
D L V++ P + + L + A++R +K+DW EW+R LS+ELLK+S SP+LR
Sbjct: 1242 GDALASGPVETGPMKKLHVSTINLQKAWGAARRVSKDDWLEWLRRLSLELLKDSSSPSLR 1301
Query: 1214 TCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNL 1273
+C LAQ + R+LF A FVSCWS+LN Q L++S+E+A +S +I E+ TLLNL
Sbjct: 1302 SCWALAQAYNPMARDLFNAAFVSCWSELNEDQQDELIRSIELALTSQDIA-EVTQTLLNL 1360
Query: 1274 AEFMEHDEK-PLPI-D---IRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVV 1328
AEFMEH +K PLP+ D I LLG A KCRA+AKALHYKE+EF+ + P A++
Sbjct: 1361 AEFMEHSDKGPLPLRDDNGIVLLGERAAKCRAYAKALHYKELEFQKGPT------P-AIL 1413
Query: 1329 EALIHINNQLHQHEAAVGILTYAQKEL-DVQLKESWYEKLQRWDDALKAYTNKA-SQASN 1386
E+LI INN+L Q EAA G+L YA K +++++ +WYEKL W+DAL AY K + +
Sbjct: 1414 ESLISINNKLQQPEAAAGVLEYAMKHFGELEIQATWYEKLHEWEDALVAYDKKMDTNKDD 1473
Query: 1387 PHIVLEATLGRMRCLAALARWEELNNLCKEYWTXXXXXXXXXXXXXXXXXXWNMGEWDQM 1446
P ++L GRMRCL AL W +L+ C E WT W +G+WD M
Sbjct: 1474 PELML----GRMRCLEALGEWGQLHQQCCEKWTLVNDETQAKMARMAAAAAWGLGQWDSM 1529
Query: 1447 AEYVSRL--DDGDESKLRGLGNTAANGD--GSSNGTFFRAV-LLVRRGKVL--ESYERAY 1499
EY + D D + R + A + D + +A LL + ESY RAY
Sbjct: 1530 EEYTCMIPRDTHDGAFYRAV--LALHQDLFSLAQQCIDKARDLLDAELTAMAGESYSRAY 1587
Query: 1500 SNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQXXXXXX 1559
MV LSELEEVI Y +P RR IIR +W ER+QG +R VE WQ
Sbjct: 1588 GAMVSCHMLSELEEVIQYKLVPE-------RREIIRQIWWERLQGCQRIVEDWQKILMVR 1640
Query: 1560 XXXXPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDP--ETSHENVRYHGPPQVMY 1617
P ED+ TWLK+ASLC KSGR++ A TLV LL DP + H H PQV Y
Sbjct: 1641 SLVVSPHEDMRTWLKYASLCGKSGRLALAHKTLVLLLGVDPSRQLDHPLPTVH--PQVTY 1698
Query: 1618 AYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQXXXXXXXXXXXXXNVPLIARVYLK 1677
AY+K W + ++ +AF +Q + Q L+AR +LK
Sbjct: 1699 AYMKNMW---KSARKIDAFQHMQHFVQTMQQ--QAQHAIATEDQQHKQELHKLMARCFLK 1753
Query: 1678 LGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHY 1729
LG W+ L G+++ +IP+++ Y AT+ W KAWH+WA+ N + HY
Sbjct: 1754 LGEWQLNLQ-GINESTIPKVLQYYSAATEHDRSWYKAWHAWAVMNFEAVLHY 1804
|
|
| UNIPROTKB|E2R2L2 MTOR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 2269 (803.8 bits), Expect = 1.0e-297, Sum P(3) = 1.0e-297
Identities = 548/1492 (36%), Positives = 826/1492 (55%)
Query: 273 EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFV-TNYLKICMNHILTV 331
+ M ++ +V + VL+ ++ L++++I +LLPR+A F F T YL+ MNH+L+
Sbjct: 364 DLMEEKFDQVCQWVLKCRNSKNSLIQMTILNLLPRLAAFRPSAFTDTQYLQDTMNHVLSC 423
Query: 332 LRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR-----RGKP-SLEA--L 383
++ ER + F ALG ++ A+ E YLP + +R A+ P+ R K ++A
Sbjct: 424 VKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDIIRAALPPKDFAHKRQKAMQVDATVF 483
Query: 384 ACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCI 443
C+ +ARAMGP ++ ++ LL+ M + GLS L L ++ IP L IQD LL +
Sbjct: 484 TCISMLARAMGPGIQQDIKELLEPMLAVGLSPALTAVLYDLSRQIPQLKKDIQDGLLKML 543
Query: 444 SFVLSKS---HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLL 500
S VL H + A + + + SD+ GS + LAL+TL F F+GH L
Sbjct: 544 SLVLMHKPLRHPGMPKGLAHQLASPGLTALPEASDV-GS--ITLALRTLGSFEFEGHSLT 600
Query: 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560
+F R +L+ E K R +AA C +L+ S +S S++ +++ +
Sbjct: 601 QFVRHCADHFLNSEHKEIRMEAARTCSRLLTPSVHLISGHAHVVSQT------AVQVVAD 654
Query: 561 LVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAI 620
++ KLL+ + D D +R+ + +SL + FD LAQA+ L A+F ALND+ F++RE AI
Sbjct: 655 VLSKLLVVGITDPDPDIRYCVLASL--DERFDAHLAQAENLQALFVALNDQVFEIRELAI 712
Query: 621 SVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680
GRLS NPA+V+P LR+ LIQ+LT LE S + +E+SA++LG L+ N RLIRPY
Sbjct: 713 CTVGRLSSMNPAFVMPFLRKMLIQILTELEHSGI-GRIKEQSARMLGHLVSNAPRLIRPY 771
Query: 681 IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD 740
+ PI KAL+ +L + + N G+I+ VL T+G+LA+V G MR+++ EL +I++ L D
Sbjct: 772 MEPILKALILKLKDPDP-DPNPGVINNVLATIGELAQVSGLEMRKWVDELFIIIMDMLQD 830
Query: 741 GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQXXXXXXXXXXXXXVWSTRREVLKVLGI 800
+ + KR+VA+ TLGQ+V STGYV+ PY +YP TRRE ++VLG+
Sbjct: 831 SSLLAKRQVALWTLGQLVASTGYVVEPYRKYPTLLEVLLNFLKTEQNQGTRREAIRVLGL 890
Query: 801 MGALDPHAHKRNQQL---SGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTV 857
+GALDP+ HK N + S V+ + S S Q M + +++Y V
Sbjct: 891 LGALDPYKHKVNIGMIDQSRDASAVSLSESKSSQDSSDYSTSEMLVNMGNLPLDEFYPAV 950
Query: 858 AINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKD 917
++ +LMRI RD SL+ +H VV ++ FIFKS+GL CV +LP+V+P + +R CD +++
Sbjct: 951 SMVALMRIFRDQSLSHHHTMVVQAITFIFKSLGLKCVQFLPQVMPTFLNVIRVCDGAIRE 1010
Query: 918 YITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLAL 977
++ +LG LVS V+ HIR Y+ E+ +L+ E W N + + +L L++Q+ +AL
Sbjct: 1011 FLFQQLGMLVSFVKSHIRPYMDEIVTLMREFW------VMNTSIQSTIIL-LIEQIVVAL 1063
Query: 978 NDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLF 1037
EF+ +LP ++P ++V + + +L +++FG LD+++HLLLP +++LF
Sbjct: 1064 GGEFKLYLPQLIPHMLRVFMH-DNSPGRIVSIKLLAAIQLFGANLDDYLHLLLPPIVKLF 1122
Query: 1038 KV-DAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLA 1096
+ P+ R+AA+ET+ RL + T + S ++H + LD ++ ELR A+D L L
Sbjct: 1123 DAPEVPLPSRKAALETVDRLTESLDFTDYASRIIHPIVRTLD-QSPELRPTAMDTLSSLV 1181
Query: 1097 HALGEDFTIFIPSIXXXXXXXXXXXXEFEEIEGRLRRREPLILGSTAAQQLSRRVPVEVI 1156
LG+ + IFIP + ++ + R+ + L R+
Sbjct: 1182 FQLGKKYQIFIPMVNKVLVRHRINHQRYDVLICRIVKGYTLADEEEDPLIYQHRMLRSGQ 1241
Query: 1157 SDPL--NDVDSDPYEDGTDAQKQL-RGHQASQRSTKEDWAEWMRHLSIELLKESPSPALR 1213
D L V++ P + + L + A++R +K+DW EW+R LS+ELLK+S SP+LR
Sbjct: 1242 GDALASGPVETGPMKKLHVSTINLQKAWGAARRVSKDDWLEWLRRLSLELLKDSSSPSLR 1301
Query: 1214 TCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNL 1273
+C LAQ + R+LF A FVSCWS+LN Q L++S+E+A +S +I E+ TLLNL
Sbjct: 1302 SCWALAQAYNPMARDLFNAAFVSCWSELNEDQQDELIRSIELALTSQDIA-EVTQTLLNL 1360
Query: 1274 AEFMEHDEK-PLPI-D---IRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVV 1328
AEFMEH +K PLP+ D I LLG A KCRA+AKALHYKE+EF+ + P A++
Sbjct: 1361 AEFMEHSDKGPLPLRDDNGIVLLGERAAKCRAYAKALHYKELEFQKGPT------P-AIL 1413
Query: 1329 EALIHINNQLHQHEAAVGILTYAQKEL-DVQLKESWYEKLQRWDDALKAYTNKA-SQASN 1386
E+LI INN+L Q EAA G+L YA K +++++ +WYEKL W+DAL AY K + +
Sbjct: 1414 ESLISINNKLQQPEAAAGVLEYAMKHFGELEIQATWYEKLHEWEDALVAYDKKMDTNKDD 1473
Query: 1387 PHIVLEATLGRMRCLAALARWEELNNLCKEYWTXXXXXXXXXXXXXXXXXXWNMGEWDQM 1446
P ++L GRMRCL AL W +L+ C E WT W +G+WD M
Sbjct: 1474 PELML----GRMRCLEALGEWGQLHQQCCEKWTLVNDETQAKMARMAAAAAWGLGQWDSM 1529
Query: 1447 AEYVSRL--DDGDESKLRGLGNTAANGD--GSSNGTFFRAV-LLVRRGKVL--ESYERAY 1499
EY + D D + R + A + D + +A LL + ESY RAY
Sbjct: 1530 EEYTCMIPRDTHDGAFYRAV--LALHQDLFSLAQQCIDKARDLLDAELTAMAGESYSRAY 1587
Query: 1500 SNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQXXXXXX 1559
MV LSELEEVI Y +P RR IIR +W ER+QG +R VE WQ
Sbjct: 1588 GAMVSCHMLSELEEVIQYKLVPE-------RREIIRQIWWERLQGCQRIVEDWQKILMVR 1640
Query: 1560 XXXXPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDP--ETSHENVRYHGPPQVMY 1617
P ED+ TWLK+ASLC KSGR++ A TLV LL DP + H H PQV Y
Sbjct: 1641 SLVVSPHEDMRTWLKYASLCGKSGRLALAHKTLVLLLGVDPSRQLDHPLPTVH--PQVTY 1698
Query: 1618 AYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQXXXXXXXXXXXXXNVPLIARVYLK 1677
AY+K W + ++ +AF +Q + Q L+AR +LK
Sbjct: 1699 AYMKNMW---KSTRKIDAFQHMQHFVQTMQQ--QAQHAIATEDQQHKQELHKLMARCFLK 1753
Query: 1678 LGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHY 1729
LG W+ L G+++ +IP+++ Y AT+ W KAWH+WA+ N + HY
Sbjct: 1754 LGEWQLNLQ-GINESTIPKVLQYYSAATEHDRSWYKAWHAWAVMNFEAVLHY 1804
|
|
| RGD|68371 Mtor "mechanistic target of rapamycin (serine/threonine kinase)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 2273 (805.2 bits), Expect = 1.3e-297, Sum P(3) = 1.3e-297
Identities = 547/1492 (36%), Positives = 825/1492 (55%)
Query: 273 EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFV-TNYLKICMNHILTV 331
+ M ++ +V + VL+ ++ L++++I +LLPR+A F F T YL+ MNH+L+
Sbjct: 364 DLMEEKFDQVCQWVLKCRSSKNSLIQMTILNLLPRLAAFRPSAFTDTQYLQDTMNHVLSC 423
Query: 332 LRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR-----RGKP-SLEA--L 383
++ ER + F ALG ++ A+ E YLP + +R A+ P+ R K ++A
Sbjct: 424 VKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDIIRAALPPKDFAHKRQKTVQVDATVF 483
Query: 384 ACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCI 443
C+ +ARAMGP ++ ++ LL+ M + GLS L L ++ IP L IQD LL +
Sbjct: 484 TCISMLARAMGPGIQQDIKELLEPMLAVGLSPALTAVLYDLSRQIPQLKKDIQDGLLKML 543
Query: 444 SFVLSKS---HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLL 500
S VL H + A + + + SD+ A + LAL+TL F F+GH L
Sbjct: 544 SLVLMHKPLRHPGMPKGLAHQLASPGLTTLPEASDV---ASITLALRTLGSFEFEGHSLT 600
Query: 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560
+F R +L+ E K R +AA C +L+ S +S S++ +++ +
Sbjct: 601 QFVRHCADHFLNSEHKEIRMEAARTCSRLLTPSIHLISGHAHVVSQT------AVQVVAD 654
Query: 561 LVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAI 620
++ KLL+ + D D +R+ + +SL + FD LAQA+ L A+F ALND+ F++RE AI
Sbjct: 655 VLSKLLVVGITDPDPDIRYCVLASL--DERFDAHLAQAENLQALFVALNDQVFEIRELAI 712
Query: 621 SVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680
GRLS NPA+V+P LR+ LIQ+LT LE S + +E+SA++LG L+ N RLIRPY
Sbjct: 713 CTVGRLSSMNPAFVMPFLRKMLIQILTELEHSGI-GRIKEQSARMLGHLVSNAPRLIRPY 771
Query: 681 IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD 740
+ PI KAL+ +L + + N G+I+ VL T+G+LA+V G MR+++ EL +I++ L D
Sbjct: 772 MEPILKALILKLKDPDP-DPNPGVINNVLATIGELAQVSGLEMRKWVDELFVIIMDMLQD 830
Query: 741 GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQXXXXXXXXXXXXXVWSTRREVLKVLGI 800
+ + KR+VA+ TLGQ+V STGYV+ PY +YP TRRE ++VLG+
Sbjct: 831 SSLLAKRQVALWTLGQLVASTGYVVEPYRKYPTLLEVLLNFLKTEQNQGTRREAIRVLGL 890
Query: 801 MGALDPHAHKRNQQL---SGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTV 857
+GALDP+ HK N + S V+ + S S Q M + +++Y V
Sbjct: 891 LGALDPYKHKVNIGMIDQSRDASAVSLSESKSSQDSSDYSTSEMLVNMGNLPLDEFYPAV 950
Query: 858 AINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKD 917
++ +LMRI RD SL+ +H VV ++ FIFKS+GL CV +LP+V+P + +R CD +++
Sbjct: 951 SMVALMRIFRDQSLSHHHTMVVQAITFIFKSLGLKCVQFLPQVMPTFLNVIRVCDGAIRE 1010
Query: 918 YITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLAL 977
++ +LG LVS V+ HIR Y+ E+ +L+ E W N + + +L L++Q+ +AL
Sbjct: 1011 FLFQQLGMLVSFVKSHIRPYMDEIVTLMREFW------VMNTSIQSTIIL-LIEQIVVAL 1063
Query: 978 NDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLF 1037
EF+ +LP ++P ++V + + +L +++FG LD+++HLLLP +++LF
Sbjct: 1064 GGEFKLYLPQLIPHMLRVFMH-DNSQGRIVSIKLLAAIQLFGANLDDYLHLLLPPIVKLF 1122
Query: 1038 KV-DAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLA 1096
+ P+ R+AA+ET+ RL + T + S ++H + LD ++ ELR A+D L L
Sbjct: 1123 DAPEVPLPSRKAALETVDRLTESLDFTDYASRIIHPIVRTLD-QSPELRSTAMDTLSSLV 1181
Query: 1097 HALGEDFTIFIPSIXXXXXXXXXXXXEFEEIEGRLRRREPLILGSTAAQQLSRRVPVEVI 1156
LG+ + IFIP + ++ + R+ + L R+
Sbjct: 1182 FQLGKKYQIFIPMVNKVLVRHRINHQRYDVLICRIVKGYTLADEEEDPLIYQHRMLRSSQ 1241
Query: 1157 SDPL--NDVDSDPYEDGTDAQKQL-RGHQASQRSTKEDWAEWMRHLSIELLKESPSPALR 1213
D L V++ P + + L + A++R +K+DW EW+R LS+ELLK+S SP+LR
Sbjct: 1242 GDALASGPVETGPMKKLHVSTINLQKAWGAARRVSKDDWLEWLRRLSLELLKDSSSPSLR 1301
Query: 1214 TCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNL 1273
+C LAQ + R+LF A FVSCWS+LN Q L++S+E+A +S +I E+ TLLNL
Sbjct: 1302 SCWALAQAYNPMARDLFNAAFVSCWSELNEDQQDELIRSIELALTSQDIA-EVTQTLLNL 1360
Query: 1274 AEFMEHDEK-PLPI-D---IRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVV 1328
AEFMEH +K PLP+ D I LLG A KCRA+AKALHYKE+EF+ + P A++
Sbjct: 1361 AEFMEHSDKGPLPLRDDNGIVLLGERAAKCRAYAKALHYKELEFQKGPT------P-AIL 1413
Query: 1329 EALIHINNQLHQHEAAVGILTYAQKEL-DVQLKESWYEKLQRWDDALKAYTNKA-SQASN 1386
E+LI INN+L Q EAA G+L YA K +++++ +WYEKL W+DAL AY K + +
Sbjct: 1414 ESLISINNKLQQPEAASGVLEYAMKHFGELEIQATWYEKLHEWEDALVAYDKKMDTNKDD 1473
Query: 1387 PHIVLEATLGRMRCLAALARWEELNNLCKEYWTXXXXXXXXXXXXXXXXXXWNMGEWDQM 1446
P ++L GRMRCL AL W +L+ C E WT W +G+WD M
Sbjct: 1474 PELML----GRMRCLEALGEWGQLHQQCCEKWTLVNDETQAKMARMAAAAAWGLGQWDSM 1529
Query: 1447 AEYVSRL--DDGDESKLRGLGNTAANGD--GSSNGTFFRAV-LLVRRGKVL--ESYERAY 1499
EY + D D + R + A + D + +A LL + ESY RAY
Sbjct: 1530 EEYTCMIPRDTHDGAFYRAV--LALHQDLFSLAQQCIDKARDLLDAELTAMAGESYSRAY 1587
Query: 1500 SNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQXXXXXX 1559
MV LSELEEVI Y +P RR IIR +W ER+QG +R VE WQ
Sbjct: 1588 GAMVSCHMLSELEEVIQYKLVPE-------RREIIRQIWWERLQGCQRIVEDWQKILMVR 1640
Query: 1560 XXXXPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDP--ETSHENVRYHGPPQVMY 1617
P ED+ TWLK+ASLC KSGR++ A TLV LL DP + H H PQV Y
Sbjct: 1641 SLVVSPHEDMRTWLKYASLCGKSGRLALAHKTLVLLLGVDPSRQLDHPLPTVH--PQVTY 1698
Query: 1618 AYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQXXXXXXXXXXXXXNVPLIARVYLK 1677
AY+K W + ++ +AF +Q + Q L+AR +LK
Sbjct: 1699 AYMKNMW---KSARKIDAFQHMQHFVQTMQQ--QAQHAIATEDQQHKQELHKLMARCFLK 1753
Query: 1678 LGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHY 1729
LG W+ L G+++ +IP+++ Y AT+ W KAWH+WA+ N + HY
Sbjct: 1754 LGEWQLNLQ-GINESTIPKVLQYYSAATEHDRSWYKAWHAWAVMNFEAVLHY 1804
|
|
| MGI|MGI:1928394 Mtor "mechanistic target of rapamycin (serine/threonine kinase)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 2273 (805.2 bits), Expect = 1.3e-297, Sum P(3) = 1.3e-297
Identities = 545/1490 (36%), Positives = 824/1490 (55%)
Query: 273 EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFV-TNYLKICMNHILTV 331
+ M ++ +V + VL+ ++ L++++I +LLPR+A F F T YL+ MNH+L+
Sbjct: 364 DLMEEKFDQVCQWVLKCRSSKNSLIQMTILNLLPRLAAFRPSAFTDTQYLQDTMNHVLSC 423
Query: 332 LRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR-----RGKP-SLEA--L 383
++ ER + F ALG ++ A+ E YLP + +R A+ P+ R K ++A
Sbjct: 424 VKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDIIRAALPPKDFAHKRQKTVQVDATVF 483
Query: 384 ACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCI 443
C+ +ARAMGP ++ ++ LL+ M + GLS L L ++ IP L IQD LL +
Sbjct: 484 TCISMLARAMGPGIQQDIKELLEPMLAVGLSPALTAVLYDLSRQIPQLKKDIQDGLLKML 543
Query: 444 SFVLSKS---HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLL 500
S VL H + A + + + SD+ A + LAL+TL F F+GH L
Sbjct: 544 SLVLMHKPLRHPGMPKGLAHQLASPGLTTLPEASDV---ASITLALRTLGSFEFEGHSLT 600
Query: 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560
+F R +L+ E K R +AA C +L+ S +S S++ +++ +
Sbjct: 601 QFVRHCADHFLNSEHKEIRMEAARTCSRLLTPSIHLISGHAHVVSQT------AVQVVAD 654
Query: 561 LVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAI 620
++ KLL+ + D D +R+ + +SL + FD LAQA+ L A+F ALND+ F++RE AI
Sbjct: 655 VLSKLLVVGITDPDPDIRYCVLASL--DERFDAHLAQAENLQALFVALNDQVFEIRELAI 712
Query: 621 SVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680
GRLS NPA+V+P LR+ LIQ+LT LE S + +E+SA++LG L+ N RLIRPY
Sbjct: 713 CTVGRLSSMNPAFVMPFLRKMLIQILTELEHSGI-GRIKEQSARMLGHLVSNAPRLIRPY 771
Query: 681 IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD 740
+ PI KAL+ +L + + N G+I+ VL T+G+LA+V G MR+++ EL +I++ L D
Sbjct: 772 MEPILKALILKLKDPDP-DPNPGVINNVLATIGELAQVSGLEMRKWVDELFIIIMDMLQD 830
Query: 741 GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQXXXXXXXXXXXXXVWSTRREVLKVLGI 800
+ + KR+VA+ TLGQ+V STGYV+ PY +YP TRRE ++VLG+
Sbjct: 831 SSLLAKRQVALWTLGQLVASTGYVVEPYRKYPTLLEVLLNFLKTEQNQGTRREAIRVLGL 890
Query: 801 MGALDPHAHKRNQQL---SGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTV 857
+GALDP+ HK N + S V+ + S S Q M + +++Y V
Sbjct: 891 LGALDPYKHKVNIGMIDQSRDASAVSLSESKSSQDSSDYSTSEMLVNMGNLPLDEFYPAV 950
Query: 858 AINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKD 917
++ +LMRI RD SL+ +H VV ++ FIFKS+GL CV +LP+V+P + +R CD +++
Sbjct: 951 SMVALMRIFRDQSLSHHHTMVVQAITFIFKSLGLKCVQFLPQVMPTFLNVIRVCDGAIRE 1010
Query: 918 YITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLAL 977
++ +LG LVS V+ HIR Y+ E+ +L+ E W N + + +L L++Q+ +AL
Sbjct: 1011 FLFQQLGMLVSFVKSHIRPYMDEIVTLMREFW------VMNTSIQSTIIL-LIEQIVVAL 1063
Query: 978 NDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLF 1037
EF+ +LP ++P ++V + + +L +++FG LD+++HLLLP +++LF
Sbjct: 1064 GGEFKLYLPQLIPHMLRVFMH-DNSQGRIVSIKLLAAIQLFGANLDDYLHLLLPPIVKLF 1122
Query: 1038 KV-DAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLA 1096
+ P+ R+AA+ET+ RL + T + S ++H + LD ++ ELR A+D L L
Sbjct: 1123 DAPEVPLPSRKAALETVDRLTESLDFTDYASRIIHPIVRTLD-QSPELRSTAMDTLSSLV 1181
Query: 1097 HALGEDFTIFIPSIXXXXXXXXXXXXEFEEIEGRLRRREPLILGSTAAQQLSRRVPVEVI 1156
LG+ + IFIP + ++ + R+ + L R+
Sbjct: 1182 FQLGKKYQIFIPMVNKVLVRHRINHQRYDVLICRIVKGYTLADEEEDPLIYQHRMLRSSQ 1241
Query: 1157 SDPL--NDVDSDPYEDGTDAQKQL-RGHQASQRSTKEDWAEWMRHLSIELLKESPSPALR 1213
D L V++ P + + L + A++R +K+DW EW+R LS+ELLK+S SP+LR
Sbjct: 1242 GDALASGPVETGPMKKLHVSTINLQKAWGAARRVSKDDWLEWLRRLSLELLKDSSSPSLR 1301
Query: 1214 TCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNL 1273
+C LAQ + R+LF A FVSCWS+LN Q L++S+E+A +S +I E+ TLLNL
Sbjct: 1302 SCWALAQAYNPMARDLFNAAFVSCWSELNEDQQDELIRSIELALTSQDIA-EVTQTLLNL 1360
Query: 1274 AEFMEHDEK-PLPI-D---IRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVV 1328
AEFMEH +K PLP+ D I LLG A KCRA+AKALHYKE+EF+ + P A++
Sbjct: 1361 AEFMEHSDKGPLPLRDDNGIVLLGERAAKCRAYAKALHYKELEFQKGPT------P-AIL 1413
Query: 1329 EALIHINNQLHQHEAAVGILTYAQKEL-DVQLKESWYEKLQRWDDALKAYTNKA-SQASN 1386
E+LI INN+L Q EAA G+L YA K +++++ +WYEKL W+DAL AY K + +
Sbjct: 1414 ESLISINNKLQQPEAASGVLEYAMKHFGELEIQATWYEKLHEWEDALVAYDKKMDTNKED 1473
Query: 1387 PHIVLEATLGRMRCLAALARWEELNNLCKEYWTXXXXXXXXXXXXXXXXXXWNMGEWDQM 1446
P ++L GRMRCL AL W +L+ C E WT W +G+WD M
Sbjct: 1474 PELML----GRMRCLEALGEWGQLHQQCCEKWTLVNDETQAKMARMAAAAAWGLGQWDSM 1529
Query: 1447 AEYVSRL--DDGDESKLRGLGNTAANGD--GSSNGTFFRAV-LLVRRGKVL--ESYERAY 1499
EY + D D + R + A + D + +A LL + ESY RAY
Sbjct: 1530 EEYTCMIPRDTHDGAFYRAV--LALHQDLFSLAQQCIDKARDLLDAELTAMAGESYSRAY 1587
Query: 1500 SNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQXXXXXX 1559
MV LSELEEVI Y +P RR IIR +W ER+QG +R VE WQ
Sbjct: 1588 GAMVSCHMLSELEEVIQYKLVPE-------RREIIRQIWWERLQGCQRIVEDWQKILMVR 1640
Query: 1560 XXXXPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAY 1619
P ED+ TWLK+ASLC KSGR++ A TLV LL DP ++ PQV YAY
Sbjct: 1641 SLVVSPHEDMRTWLKYASLCGKSGRLALAHKTLVLLLGVDPSRQLDHPLPTAHPQVTYAY 1700
Query: 1620 LKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQXXXXXXXXXXXXXNVPLIARVYLKLG 1679
+K W + ++ +AF +Q + Q L+AR +LKLG
Sbjct: 1701 MKNMW---KSARKIDAFQHMQHFVQTMQQ--QAQHAIATEDQQHKQELHKLMARCFLKLG 1755
Query: 1680 SWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHY 1729
W+ L G+++ +IP+++ Y AT+ W KAWH+WA+ N + HY
Sbjct: 1756 EWQLNLQ-GINESTIPKVLQYYSAATEHDRSWYKAWHAWAVMNFEAVLHY 1804
|
|
| UNIPROTKB|F1RHR8 MTOR "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 2267 (803.1 bits), Expect = 1.7e-297, Sum P(3) = 1.7e-297
Identities = 547/1491 (36%), Positives = 826/1491 (55%)
Query: 273 EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFV-TNYLKICMNHILTV 331
+ M ++ +V + VL+ ++ L++++I +LLPR+A F F T YL+ MNH+L+
Sbjct: 364 DLMEEKFDQVCQWVLKCRNSKNSLIQMTILNLLPRLAAFRPSAFTDTQYLQDTMNHVLSC 423
Query: 332 LRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR-----RGKP-SLEA--L 383
++ ER + F ALG ++ A+ E YLP + +R A+ P+ R K ++A
Sbjct: 424 VKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDIIRAALPPKDFAHKRQKAMQVDATVF 483
Query: 384 ACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCI 443
C+ +ARAMGP ++ ++ LL+ M + GLS L L ++ IP L IQD LL +
Sbjct: 484 TCISMLARAMGPGIQQDIKELLEPMLAVGLSPALTAVLYDLSRQIPQLKKDIQDGLLKML 543
Query: 444 SFVLSKS---HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLL 500
S VL H + A + + + SD+ GS + LAL+TL F F+GH L
Sbjct: 544 SLVLMHKPLRHPGMPKGLAHQLASPSLTTLPEASDV-GS--ITLALRTLGSFEFEGHSLT 600
Query: 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560
+F R +L+ E K R +AA C +L+ S +S S++ +++ +
Sbjct: 601 QFVRHCADHFLNSEHKEIRMEAARTCSRLLTPSVHLISGHAHVVSQT------AVQVVAD 654
Query: 561 LVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAI 620
++ KLL+ + D D +R+ + +SL + FD LAQA+ L A+F ALND+ F++RE AI
Sbjct: 655 VLSKLLVVGITDPDPDIRYCVLASL--DERFDAHLAQAENLQALFVALNDQVFEIRELAI 712
Query: 621 SVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680
GRLS NPA+V+P LR+ LIQ+LT LE S + +E+SA++LG L+ N RLIRPY
Sbjct: 713 CTVGRLSSMNPAFVMPFLRKMLIQILTELEHSGI-GRIKEQSARMLGHLVSNAPRLIRPY 771
Query: 681 IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD 740
+ PI KAL+ +L + + N G+I+ VL T+G+LA+V G MR+++ EL +I++ L D
Sbjct: 772 MEPILKALILKLKDPDP-DPNPGVINNVLATIGELAQVSGLEMRKWVDELFIIIMDMLQD 830
Query: 741 GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQXXXXXXXXXXXXXVWSTRREVLKVLGI 800
+ + KR+VA+ TLGQ+V STGYV+ PY +YP TRRE ++VLG+
Sbjct: 831 SSLLAKRQVALWTLGQLVASTGYVVEPYRKYPTLLEVLLNFLKTEQNQGTRREAIRVLGL 890
Query: 801 MGALDPHAHKRNQQL---SGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTV 857
+GALDP+ HK N + S V+ + S S Q M + +++Y V
Sbjct: 891 LGALDPYKHKVNIGMIDQSRDASAVSLSESKSSQDSSDYSTSEMLVNMGNLPLDEFYPAV 950
Query: 858 AINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKD 917
++ +LMRI RD SL+ +H VV ++ FIFKS+GL CV +LP+V+P + +R CD +++
Sbjct: 951 SMVALMRIFRDQSLSHHHTMVVQAITFIFKSLGLKCVQFLPQVMPTFLNVIRVCDGAIRE 1010
Query: 918 YITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLAL 977
++ +LG LVS V+ HIR Y+ E+ +L+ E W N + + +L L++Q+ +AL
Sbjct: 1011 FLFQQLGMLVSFVKSHIRPYMDEIVTLMREFW------VMNTSIQSTIIL-LIEQIVVAL 1063
Query: 978 NDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLF 1037
EF+ +LP ++P ++V + + +L +++FG LD+++HLLLP +++LF
Sbjct: 1064 GGEFKLYLPQLIPHMLRVFMH-DNSPGRIVSIKLLAAIQLFGANLDDYLHLLLPPIVKLF 1122
Query: 1038 KV-DAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLA 1096
+ P+ R+AA+ET+ RL + T + S ++H + LD ++ ELR A+D L L
Sbjct: 1123 DAPEVPLPSRKAALETVDRLTESLDFTDYASRIIHPIVRTLD-QSPELRPTAMDTLSSLV 1181
Query: 1097 HALGEDFTIFIPSIXXXXXXXXXXXXEFEEIEGRLRRREPLILGSTAAQQLSRRVPVEVI 1156
LG+ + IFIP + ++ + R+ + L R+
Sbjct: 1182 FQLGKKYQIFIPMVNKVLVRHRINHQRYDILICRIVKGYTLADEEEDPLIYQHRMLRSGQ 1241
Query: 1157 SDPL--NDVDSDPYEDGTDAQKQL-RGHQASQRSTKEDWAEWMRHLSIELLKESPSPALR 1213
D L V++ P + + L + A++R +K+DW EW+R LS+ELLK+S SP+LR
Sbjct: 1242 GDALASGPVETGPMKKLHVSTINLQKAWGAARRVSKDDWLEWLRRLSLELLKDSSSPSLR 1301
Query: 1214 TCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNL 1273
+C LAQ + R+LF A FVSCWS+LN Q L++S+E+A +S +I E+ TLLNL
Sbjct: 1302 SCWALAQAYNPMARDLFNAAFVSCWSELNEDQQDELIRSIELALTSQDIA-EVTQTLLNL 1360
Query: 1274 AEFMEHDEK-PLPI-D---IRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVV 1328
AEFMEH +K PLP+ D I LLG A KCRA+AKALHYKE+EF+ + P A++
Sbjct: 1361 AEFMEHSDKGPLPLRDDNGIVLLGERAAKCRAYAKALHYKELEFQKGPT------P-AIL 1413
Query: 1329 EALIHINNQLHQHEAAVGILTYAQKEL-DVQLKESWYEKLQRWDDALKAYTNKA-SQASN 1386
E+LI INN+L Q EAA G+L YA K +++++ +WYEKL W+DAL AY K + +
Sbjct: 1414 ESLISINNKLQQPEAAAGVLEYAMKHFGELEIQATWYEKLHEWEDALVAYDKKMDTNKDD 1473
Query: 1387 PHIVLEATLGRMRCLAALARWEELNNLCKEYWTXXXXXXXXXXXXXXXXXXWNM-GEWDQ 1445
P ++L GRMRCL AL W +L+ C E WT W + G+WD
Sbjct: 1474 PELML----GRMRCLEALGEWGQLHQQCCEKWTLVNDETQAKMARMAAAAAWGLAGQWDS 1529
Query: 1446 MAEYVSRL--DDGDESKLRGLGNTAANGD--GSSNGTFFRAV-LLVRRGKVL--ESYERA 1498
M EY + D D + R + A + D + +A LL + ESY RA
Sbjct: 1530 MEEYTCMIPRDTHDGAFYRAV--LALHQDLFSLAQQCIDKARDLLDAELTAMAGESYSRA 1587
Query: 1499 YSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQXXXXX 1558
Y MV LSELEEVI Y +P RR IIR +W ER+QG +R VE WQ
Sbjct: 1588 YGAMVSCHMLSELEEVIQYKLVPE-------RREIIRQIWWERLQGCQRIVEDWQRILMV 1640
Query: 1559 XXXXXPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYA 1618
P ED+ TWLK+ASLC KSGR++ A TLV LL DP ++ G PQV YA
Sbjct: 1641 RSLVVSPHEDMRTWLKYASLCGKSGRLALAHKTLVLLLGVDPSRQLDHPLPTGHPQVTYA 1700
Query: 1619 YLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQXXXXXXXXXXXXXNVPLIARVYLKL 1678
Y+K W + ++ +AF +Q + Q L+AR +LKL
Sbjct: 1701 YMKNMW---KSARKIDAFQHMQHFVQTMQQ--QAQRAIATEDQQHKQELHKLMARCFLKL 1755
Query: 1679 GSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHY 1729
G W+ L G+++ +IP+++ Y AT+ W KAWH+WA+ N + HY
Sbjct: 1756 GEWQLNLQ-GINESTIPKVLQYYSAATEHDRSWYKAWHAWAVMNFEAVLHY 1805
|
|
| UNIPROTKB|F1NUX4 MTOR "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 2293 (812.2 bits), Expect = 2.8e-293, Sum P(3) = 2.8e-293
Identities = 557/1503 (37%), Positives = 840/1503 (55%)
Query: 273 EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTN-YLKICMNHILTV 331
+ M ++ +V + VL+ ++ L+++++ +LLPR+A F F + YL MNH+L+
Sbjct: 282 DLMEEKFDQVCQWVLKCRTSKNSLIQMTVLNLLPRLAAFRPSAFTADQYLPDTMNHVLSC 341
Query: 332 LRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR----RGKPSLEALA--- 384
++ ER + F ALG ++ A+ E YLP + ++ A+ P+ + + S++ A
Sbjct: 342 VKKEKERTAAFQALGLLSVAVRSEFQAYLPKVLEIIKAALPPKDFAHKRQKSVQVDATVF 401
Query: 385 -CVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCI 443
C+ +ARAMGP ++ ++ LL+ M + GLS L L ++ IP L IQD LL +
Sbjct: 402 TCISMLARAMGPSIQQDIKELLEPMLAVGLSPALTAVLYDLSRQIPQLKKDIQDGLLKML 461
Query: 444 SFVLSKS---HYSQARPAATPIRG-NVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDL 499
S VL H + A + ++ NIP+ SD+ GS + LAL+TL F F+GH L
Sbjct: 462 SLVLMHKPLRHPGMPKGLAHQLASPSLTNIPE-ASDV-GS--ITLALRTLGSFEFEGHSL 517
Query: 500 LEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIE 559
+F R +L+ E K R +AA C +L+ S +S S++ +++
Sbjct: 518 TQFVRHCADHFLNSEHKEIRMEAARTCSRLLTPSIHLISGHAHVVSQT------AVQVVA 571
Query: 560 ELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYA 619
+++ KLL+ + D D +R + +SL + FD LAQA+ L A+F ALND+ F++RE A
Sbjct: 572 DVLSKLLVVGITDPDPDIRFCVLASL--DERFDAHLAQAENLQALFVALNDQVFEIRELA 629
Query: 620 ISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679
I GRLS NPA+V+P LR+ LIQ+LT LE S + +E+SA++LG L+ N RLIRP
Sbjct: 630 ICTVGRLSSMNPAFVMPFLRKMLIQILTELEHSGV-GRIKEQSARMLGHLVSNAPRLIRP 688
Query: 680 YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALL 739
Y+ PI KAL+ +L + + N G+I+ VL T+G+LA+V G MR+++ EL +I++ L
Sbjct: 689 YMEPILKALIVKLKDPDP-DPNPGVINNVLATIGELAQVSGLEMRKWVDELFIIIMDMLQ 747
Query: 740 DGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQXXXXXXXXXXXXXVWSTRREVLKVLG 799
D + + KR+VA+ TLGQ+V STGYV+ PY +YP TRRE ++VLG
Sbjct: 748 DSSLLAKRQVALWTLGQLVASTGYVVEPYRKYPTLLEVLLNFLKTEQNQGTRREAIRVLG 807
Query: 800 IMGALDPHAHKRNQQL---SGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYST 856
++GALDP+ HK N + S V+ + S S Q M + +++Y
Sbjct: 808 LLGALDPYKHKVNIGMIDQSRDASAVSLSESKSSQDSSDYSTSEMLVNMGNLPLDEFYPA 867
Query: 857 VAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLK 916
V++ +LMRI RD SL+ +H VV ++ FIFKS+GL CV +LP+V+P + +R CD ++
Sbjct: 868 VSMVALMRIFRDQSLSQHHTMVVQAITFIFKSLGLKCVQFLPQVMPTFLNVIRVCDGAIR 927
Query: 917 DYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLA 976
+++ +LG LVS VR HIR Y+ E+ +L+ + W N + + +L L++Q+ +A
Sbjct: 928 EFLFQQLGMLVSFVRSHIRPYMDEIVTLMRDFW------VMNNSIQSTIIL-LIEQIVVA 980
Query: 977 LNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRL 1036
L EF+ +LP ++P ++V + + +L+ +++FG LD+++HLLLP +++L
Sbjct: 981 LGGEFKLYLPQLIPHMLRVFMH-DNSQSRIVSVKLLNAIQLFGANLDDYLHLLLPPIVKL 1039
Query: 1037 FKV-DAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCL 1095
F DAPV R+AA+ET+ RL + T + S ++H + LD ++ ELR A+D L L
Sbjct: 1040 FDAPDAPVVARKAALETVDRLTESLDFTDYASRIIHPIVRTLD-QSPELRTTAMDTLSSL 1098
Query: 1096 AHALGEDFTIFIPSIXXXXXXXXXXXXEFEEIEGRL--------RRREPLI-----LGST 1142
LG+ + IFIP + ++ + R+ +PLI L S
Sbjct: 1099 VFQLGKKYQIFIPMVNKVLVRHRINHQRYDVLICRIVKGYTLADEEEDPLIYQHRMLRSN 1158
Query: 1143 AAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQASQRSTKEDWAEWMRHLSIE 1202
+ L+ PVE + P+ + + + QK G A++R +K+DW EW+R LS+E
Sbjct: 1159 QGETLASG-PVE--TGPMKKL----HVSTINLQKAW-G--AARRVSKDDWLEWLRRLSLE 1208
Query: 1203 LLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNI 1262
LLK+S SP+LR+C LAQ + R+LF A FVSCWS+LN Q L++S+E+A +S +I
Sbjct: 1209 LLKDSSSPSLRSCWALAQAYNPMARDLFNAAFVSCWSELNEDQQDELIRSIELALTSQDI 1268
Query: 1263 PPEILATLLNLAEFMEHDEK-PLPI-D---IRLLGALAEKCRAFAKALHYKEMEFEGARS 1317
E+ TLLNLAEFMEH +K PLP+ D I LLG A KCRA+AKALHYKE+EF+ +
Sbjct: 1269 A-EVTQTLLNLAEFMEHSDKGPLPLRDDNGIVLLGERAAKCRAYAKALHYKELEFQKGPT 1327
Query: 1318 NRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL-DVQLKESWYEKLQRWDDALKA 1376
P A++E+LI INN+L Q EAA G+L YA K +++++ +WYEKL W+DAL A
Sbjct: 1328 ------P-AILESLISINNKLQQPEAAAGVLEYAMKHFGELEIQATWYEKLHEWEDALVA 1380
Query: 1377 YTNKA-SQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTXXXXXXXXXXXXXXXX 1435
Y K + +P ++L GRMRCL AL W +L+ C E WT
Sbjct: 1381 YDKKMDTNKDDPELML----GRMRCLEALGEWGQLHQQCCEKWTQVNDETQAKMARMAAA 1436
Query: 1436 XXWNMGEWDQMAEYVSRL--DDGDESKLRGLGNTAANGD--GSSNGTFFRAV-LLVRRGK 1490
W +G+WD M EY + D D + R + A + D + +A LL
Sbjct: 1437 AAWGLGQWDSMEEYTCMIPRDTHDGAFYRAV--LALHQDLFSLAQQCIDKARDLLDAELT 1494
Query: 1491 VL--ESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRN 1548
+ ESY RAY MV Q LSELEEVI Y +P RR IIR +W ER+QG +R
Sbjct: 1495 AMAGESYSRAYGAMVSCQMLSELEEVIQYKLVPE-------RREIIRQIWWERLQGCQRI 1547
Query: 1549 VEVWQXXXXXXXXXXPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDP--ETSHEN 1606
VE WQ P ED+ TWLK+ASLC KSGR++ A TLV LL DP + H
Sbjct: 1548 VEDWQRILMVRSLVVNPHEDMRTWLKYASLCGKSGRLALAHKTLVLLLGVDPSRQLDHPL 1607
Query: 1607 VRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQXXXXXXXXXXXXX 1666
H PQV YAY+K+ W + ++ +AF +Q + Q
Sbjct: 1608 PTVH--PQVTYAYMKHMW---KSARKIDAFQHMQHFVQTMQQ--QAQHAIATEDQQHKQE 1660
Query: 1667 NVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726
L+AR +LKLG W+ L G+++ +IP+++ Y AT+ W KAWH+WA+ N +
Sbjct: 1661 LHKLMARCFLKLGEWQLNLQ-GINESTIPKVLQYYSAATEHDRNWYKAWHAWAVMNFEAV 1719
Query: 1727 SHY 1729
HY
Sbjct: 1720 LHY 1722
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0DJS1 | TOR_ORYSJ | 2, ., 7, ., 1, 1, ., 1 | 0.7439 | 0.9702 | 0.7399 | yes | no |
| Q9FR53 | TOR_ARATH | 2, ., 7, ., 1, 1, ., 1 | 0.8146 | 0.9946 | 0.7537 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1880 | |||
| COG5032 | 2105 | COG5032, TEL1, Phosphatidylinositol kinase and pro | 1e-117 | |
| pfam02259 | 350 | pfam02259, FAT, FAT domain | 7e-85 | |
| pfam11865 | 160 | pfam11865, DUF3385, Domain of unknown function (DU | 4e-58 | |
| pfam13646 | 88 | pfam13646, HEAT_2, HEAT repeats | 0.001 | |
| COG5215 | 858 | COG5215, KAP95, Karyopherin (importin) beta [Intra | 0.004 |
| >gnl|CDD|227365 COG5032, TEL1, Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 412 bits (1060), Expect = e-117
Identities = 367/1677 (21%), Positives = 641/1677 (38%), Gaps = 146/1677 (8%)
Query: 256 SIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDR 315
+H S L E E + + V L L+++ + +LP + FL
Sbjct: 35 LLHVSFLDYKEKD----ERLSNVNDLVRNSTQSLLNTISNLIKI-VKFVLPLKSFFLSPI 89
Query: 316 FVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRR 375
F + M IL + AL A D L L TI L + + R
Sbjct: 90 FA-KLRALPMTKILCISADTYCLSLSIKAL-----ADDESLTTILKTIRELLSKFLLRLR 143
Query: 376 GKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTI 435
+G +A+ LL + LS L + ++ SL T+
Sbjct: 144 LLFL-----FIGLLAQKFSEAQSKLFFKLLLSILKEILSDAYEALLNDLLENLKSLKETL 198
Query: 436 QDRLLDCISFVLSKSHYSQA--RPAATP----IRGNVMNIPQQVSDLNGSAPVQL-ALQT 488
Q+RLL + + +++ R + +++ S PV +
Sbjct: 199 QNRLLPLLFNISDGNYFKVEIGRKLLDHLNALGQILDCQKIAKITKSFRSLPVIIKKFLN 258
Query: 489 LARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSN 548
L + L F R S++ YLD + K + C L
Sbjct: 259 LLLIKVSYY-LPSFFRLSLLSYLDHFETDLFKTFLVTSCFLFF----------VDEICKP 307
Query: 549 RTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAAL 608
+ + E+L + L I D+ +R S SSL FD LA D + +F
Sbjct: 308 ESEHLAEEVSEKLSKFLTIEI-IDSFPEIRISALSSLLVI--FDYHLALPDAVRLLFGES 364
Query: 609 NDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGC 668
ND+ F + E A+ GRL PA VLP+L L+ LLT L+ S E SA+LL
Sbjct: 365 NDKVFLISELALDSTGRLLRVLPARVLPSLFEFLLSLLTVLK-ISGLILEFEISAQLLCN 423
Query: 669 LIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFG-MRQYI 727
LIR+ +L+ I+P ++ + I+++N IS + +G+L + G + Y
Sbjct: 424 LIRSSNQLLTSLISPYFLFILPKC-----IDSSNSEISYRVENLGELKDILGLDRITDYQ 478
Query: 728 SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELV 787
+ + LI+ ++ + V KRE Q+ VI P+ +YP+ L L +K++ V
Sbjct: 479 ALSLRLIIVSIQLRSFVFKREAINQIFKQL---ASIVIKPFLDYPKRLDLPIKIVTVVYV 535
Query: 788 WSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPS- 846
RR K+ G++G++D ++H + S S P + P+ L
Sbjct: 536 ALLRRPTEKLSGVLGSIDKYSHIE-----------SEEMSSS---DFPWTKNPVGLQLLA 581
Query: 847 ----FATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLP 902
+ +D Y TV+ +L+ IL+ P L+ H ++ ++M I S+G + P
Sbjct: 582 VYGFIRSIDDLYFTVSDPTLIEILKLPVLSIVHSAIIEAIMLIKLSLGSESSQFEDLN-P 640
Query: 903 DLFHTVRTCD-DYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTY 961
+ + Y L +V IR + + + S ++ L
Sbjct: 641 SFLYIFSNNSISDILFYFQNFLELIVIAFFPLIRSEIIGIVLISSLFSKTWIL------- 693
Query: 962 RGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLD--ILHTLEVFG 1019
L ++ + +L AL E + P + + ++ +Y+ V +L L FG
Sbjct: 694 LKLLLIAFISKLISALQGELKMLAPTLFTLFLVLVERY-LDVEYSSVSFKLLLVILVYFG 752
Query: 1020 GTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
G L+ + L+L ++ L + IE L++ ++ + S L+ L L
Sbjct: 753 GNLESLVLLILDLIVMLVEYTELGLQESIFIERLSQFFKFKNLSENASRLLPPLMDNLS- 811
Query: 1080 KNDELRKDAVDALCCLAHALGEDFTI-FIPSIHKLL-LKHRLRHKEFEEIEGRLRRREPL 1137
K+ ELR + D + L L D I FIP I+ L R+ ++ + E L
Sbjct: 812 KSHELRCVSEDDVSALLIQLLTDRVICFIPVINSSLGDSRRIFLSLLAQLLDDSLKEESL 871
Query: 1138 ILGSTAAQQLSRRVPVEVISDPLNDVDSDPYED---GTDAQKQLRGHQA---SQRSTKED 1191
L V + + Q +A K+
Sbjct: 872 P------YNL--NVDRGTDLREF--FQTVKSKAEVLSMLPFVQSILFEAWNRVDFLLKDF 921
Query: 1192 WAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQ 1251
W E + +L + LLKE P ALR C+ L+ L +GREL+ + CW +L + ++ L++
Sbjct: 922 WQEELDNLLVALLKELPFMALRDCSILSDLYFMLGRELWNSVSFECWLELMNSYKRLLIK 981
Query: 1252 SLEMAFSSPNIPPEILATLL---NLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1308
SL+ P IP IL LL NL EF EH K LP+ +G C AK LH +
Sbjct: 982 SLKSKLHLPTIPILILQMLLDSKNLTEFTEHQLKNLPLPSLSIGFYESLCSFLAKLLHDE 1041
Query: 1309 EMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQ 1368
E+ F +E L+ +N ++Q + IL + + QLK + LQ
Sbjct: 1042 ELYFFPLLFVS-------SLETLLSVNYHINQLDLRPNILKHFGSFVRFQLKPHLVKYLQ 1094
Query: 1369 RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE 1428
RW +AL Y S+ + + ++R + AL + E ++L + + R
Sbjct: 1095 RWYEALNRYFELLSKGDR---LFAISFTKLRNVDALGKLELYSSLAEIDMFLSLHRRRKL 1151
Query: 1429 MAPMAANAAWNMGEWDQMAEYVS---------RLDDGDESKLRGLGNTAANGDGSSNGTF 1479
+ + A A +GEW + + + + + D
Sbjct: 1152 LETLVATAYEQVGEWYKAQQLYEVAQRKARSKEFPFSLQYLYWHINDI-DCADK-LQSVL 1209
Query: 1480 FRAVLL--VRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNM 1537
L+ + + ES+ RA + ++ SELEE+ID + A ++ +
Sbjct: 1210 AELSLVTGISELLLEESWRRALFSNIKDSLESELEEIIDGMYKSNEDFGALMLLSLSAEL 1269
Query: 1538 WTERIQG---TKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVK 1594
W + ++G +++++ + ++V+ P ++ E ++KF LC S S+ ++
Sbjct: 1270 WDKILEGRSSCSKSIKLSLNIWLDLSIVVSPKDEPELFIKFVELCEASSIRSKLLEKNIQ 1329
Query: 1595 LL--QYDPETSHENV-RYHGPPQVMYAYLKYQWSLG---EDLKRKEAFARLQTLAMELSS 1648
L + + S R PP LK + L+ L + + L S
Sbjct: 1330 ELLEKLEEIKSPLGTLRDRLPPPWALLDLKRLLATWRQNAFLRINPELLPLLSSLLNLQS 1389
Query: 1649 CPVI-QSAASTSLTTATSTN--VPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNAT 1705
+ Q + S +A S N + + +L K+ S ++ Y
Sbjct: 1390 SSLSKQLVSRGSSESAISINSFASVARKHFLPDNQLKKIYQLSNILISEAFLLLRYLLLC 1449
Query: 1706 QCATKWGKAWHS-WALFNTAVMSHYTLRGLPSVAP----QFVVHAVTGYFHSIACAAHAK 1760
+ + KA + W L N + S ++ + F S A
Sbjct: 1450 RLGRRELKAGLNVWNLTNLELFSDIQESEFFEWGKNLKLLSIIPPIEEIFLSN-----AL 1504
Query: 1761 GVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINT-WLVVLPQIIARIHSNNRAV 1819
++D+L+ L L+ G+ + A + + +I + V+P I + S +
Sbjct: 1505 SCYLQVKDLLKKLNLFELLGSLLSAKDAAGSYYKNFHIFDLEISVIPFIPQLLSSLSLLD 1564
Query: 1820 RELIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGVLVDQSC 1876
QSLL +IG+ HPQAL++ L A +S + + + A + +K R H LV ++
Sbjct: 1565 LNSAQSLLSKIGKEHPQALVFTLRSAIESTALSKESVALSLENKSRTHDPSLVKEAL 1621
|
Length = 2105 |
| >gnl|CDD|216950 pfam02259, FAT, FAT domain | Back alignment and domain information |
|---|
Score = 281 bits (722), Expect = 7e-85
Identities = 130/385 (33%), Positives = 183/385 (47%), Gaps = 75/385 (19%)
Query: 1430 APMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRG 1489
AP+A AAW +G+WD+M EY+S + + S + +F++A+L + R
Sbjct: 1 APLALEAAWRLGQWDEMDEYLSSMKEA-----------------SPDRSFYQALLALHRN 43
Query: 1490 K----------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVA 1527
ESY RAY +VR+QQL+ELEE I Y +
Sbjct: 44 DFDEAERYIDKARQLLDTELSALPGESYNRAYPLLVRLQQLAELEEAIQYKSKLGDGSSE 103
Query: 1528 EGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLP------PTEDVETWLKFASLCRK 1581
+ IR W +R+ G + +VE+WQ +L+ R+LVL P E E WLKFA+L RK
Sbjct: 104 SLKS--IRQTWRKRLPGCQDDVEIWQDILSWRSLVLSLINYRGPHELAEMWLKFANLARK 161
Query: 1582 SGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQ- 1640
SGR S A L+KLL YD P V+ AY KY W+ G+ ++EA +L+
Sbjct: 162 SGRFSLAEKALLKLLTYDTRED--------LPNVVIAYAKYLWAKGQ---QQEAIQKLRE 210
Query: 1641 ----TLAMELSSCPVIQSAASTSLTTATSTNV-----PLIARVYLKLGSWKRALPPGLDD 1691
L+ + S + + +STN+ L+AR +LKLG W L
Sbjct: 211 FVSCYLSKPVGSSSDSELLLGLTYEVISSTNLEYFEAKLLARCFLKLGEWLDKLQMNWGQ 270
Query: 1692 ESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYT--LRGLPSVAPQFVVHAVTGY 1749
EI+ AYR A Q +W KAWHSWAL N V+ + ++VV AV GY
Sbjct: 271 GKKDEILQAYRTAVQFDDQWYKAWHSWALANFEVLQLDEQEPLAPSELRSEYVVPAVEGY 330
Query: 1750 FHSIACAAHAKGVDDSLQDILRLLT 1774
S++ + SLQD+LRLLT
Sbjct: 331 LKSLSL-----SSEKSLQDLLRLLT 350
|
The FAT domain is named after FRAP, ATM and TRRAP. Length = 350 |
| >gnl|CDD|204764 pfam11865, DUF3385, Domain of unknown function (DUF3385) | Back alignment and domain information |
|---|
Score = 197 bits (502), Expect = 4e-58
Identities = 75/168 (44%), Positives = 106/168 (63%), Gaps = 8/168 (4%)
Query: 764 VITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVT 823
V+ PY +YP+LLG+LL +L E W RRE LK+LGI+GALDP+ HK ++ +
Sbjct: 1 VVEPYLDYPELLGVLLNILKTETSWEVRRETLKLLGILGALDPYKHKEIER--NLSDGQS 58
Query: 824 RAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLM 883
+S + L PS S++YY TV INSL++IL+DPSL+S+H VV ++M
Sbjct: 59 A---ESTNKCTDILLLMKGLSPS---SDEYYPTVVINSLLKILKDPSLSSHHTAVVQAIM 112
Query: 884 FIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVR 931
IFKS+GL CVP+LP+V+P +RT L ++ +L TLVSIV+
Sbjct: 113 NIFKSLGLKCVPFLPQVIPPFLSVIRTLPASLLEFYFQQLSTLVSIVK 160
|
This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 160 to 172 amino acids in length. This domain is found associated with pfam00454, pfam02260, pfam02985, pfam02259 and pfam08771. Length = 160 |
| >gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 18/106 (16%)
Query: 562 VEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAIS 621
+E LL A ++D D VR + +L G G + L A+ L D D +VR A
Sbjct: 1 LEALLEALLSDPDPEVRAAAARAL-GELGDPEALP------ALLELLKDPDPEVRRAAAE 53
Query: 622 VAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLG 667
G+L + LPAL L Q D R +A L
Sbjct: 54 ALGKLGDPE---ALPALLELL--------QDDDDAVVRAAAASALA 88
|
This family includes multiple HEAT repeats. Length = 88 |
| >gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.004
Identities = 42/221 (19%), Positives = 79/221 (35%), Gaps = 17/221 (7%)
Query: 845 PSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDL 904
ED + +RIL + V ++ + S+ Y K +P L
Sbjct: 589 RDIEDVED----QLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYL 644
Query: 905 FHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGL 964
+ D ++ + +G L + + Y L S + + SS AT+R +
Sbjct: 645 TRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSS---EATHRDLKPA 701
Query: 965 PVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLD--------ILHTLE 1016
+L + + LA+ F ++L +I+ Q S+ + +D YV D +
Sbjct: 702 -ILSVFGDIALAIGANFESYLDMIMMLFQQA-SELDPHSDEVYVDDYRKNAVQLVNCAYV 759
Query: 1017 VFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLI 1057
G + + +LP +I +F + E TR
Sbjct: 760 GIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAA 800
|
Length = 858 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1880 | |||
| KOG0891 | 2341 | consensus DNA-dependent protein kinase [Replicatio | 100.0 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 100.0 | |
| COG5032 | 2105 | TEL1 Phosphatidylinositol kinase and protein kinas | 100.0 | |
| KOG0889 | 3550 | consensus Histone acetyltransferase SAGA, TRRAP/TR | 100.0 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 100.0 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 100.0 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 100.0 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 100.0 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 100.0 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.96 | |
| KOG0892 | 2806 | consensus Protein kinase ATM/Tel1, involved in tel | 99.95 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.95 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.94 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.93 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.91 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 99.9 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.86 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.75 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.72 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.69 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.65 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.65 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.64 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.64 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.54 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.51 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.45 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.14 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.14 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 99.04 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.02 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.0 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 98.98 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 98.97 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 98.94 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.93 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.89 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 98.87 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.84 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 98.78 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 98.77 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 98.66 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 98.66 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 98.62 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 98.61 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.49 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 98.48 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.48 | |
| KOG0891 | 2341 | consensus DNA-dependent protein kinase [Replicatio | 98.41 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 98.36 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 98.35 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 98.32 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.24 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.18 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.17 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 98.17 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 98.14 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 98.09 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 98.04 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 97.96 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.94 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 97.91 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.9 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.85 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 97.85 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 97.78 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 97.77 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 97.74 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 97.74 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 97.74 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 97.73 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 97.71 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.7 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 97.67 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 97.67 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 97.65 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 97.62 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.62 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 97.58 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 97.55 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 97.51 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 97.47 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.46 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.38 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 97.37 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.36 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 97.35 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 97.25 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 97.15 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 97.14 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 97.14 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.1 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 97.09 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 97.09 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 97.08 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 97.07 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 97.06 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.03 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 97.02 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 97.02 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 96.97 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 96.93 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 96.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 96.92 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 96.92 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 96.86 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 96.85 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 96.78 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 96.77 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.76 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 96.73 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 96.7 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.69 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 96.68 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 96.67 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 96.67 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 96.65 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 96.64 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 96.62 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.47 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 96.43 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 96.43 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 96.38 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 96.36 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 96.33 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 96.33 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.32 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 96.32 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 96.2 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.19 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 96.14 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 96.07 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 96.05 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 96.03 | |
| KOG2081 | 559 | consensus Nuclear transport regulator [Intracellul | 96.03 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.0 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 95.91 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 95.86 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 95.82 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 95.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 95.79 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 95.76 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 95.74 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 95.67 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 95.63 | |
| KOG2021 | 980 | consensus Nuclear mRNA export factor receptor LOS1 | 95.58 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 95.56 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 95.54 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 95.46 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.46 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 95.4 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 95.31 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 95.3 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 95.26 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 95.22 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 95.05 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 95.04 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 94.98 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 94.97 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 94.92 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 94.83 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 94.8 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 94.65 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.62 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 94.38 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 94.28 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 94.28 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 94.25 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 93.94 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 93.89 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 93.88 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 93.72 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 93.66 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 93.65 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 93.54 | |
| PF08713 | 213 | DNA_alkylation: DNA alkylation repair enzyme; Inte | 93.11 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 93.09 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 92.95 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 92.8 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 92.65 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 92.63 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 92.61 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 92.6 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 92.49 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 92.44 | |
| PF08767 | 319 | CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 | 92.2 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 92.19 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 92.16 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 91.95 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 91.78 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 91.75 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 91.56 | |
| PF08767 | 319 | CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 | 91.41 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 91.36 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 91.31 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 91.22 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 91.14 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 91.11 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 91.05 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 91.02 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 90.98 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 90.89 | |
| COG5095 | 450 | TAF6 Transcription initiation factor TFIID, subuni | 90.85 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 90.7 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 90.52 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 90.49 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 90.17 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 90.14 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 90.05 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 90.05 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 90.01 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 89.85 | |
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 89.71 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 89.63 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 89.46 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 89.39 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 89.34 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 89.3 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 89.26 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 89.01 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 88.83 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 88.62 | |
| COG5095 | 450 | TAF6 Transcription initiation factor TFIID, subuni | 88.51 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 88.24 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 88.02 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 87.9 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 87.56 | |
| PF12765 | 42 | Cohesin_HEAT: HEAT repeat associated with sister c | 87.56 | |
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 87.54 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 87.44 | |
| PF11919 | 90 | DUF3437: Domain of unknown function (DUF3437); Int | 87.31 | |
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 87.12 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 86.93 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 86.8 | |
| COG5101 | 1053 | CRM1 Importin beta-related nuclear transport recep | 86.75 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 86.6 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 86.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 86.5 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 86.38 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 85.7 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 85.51 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 85.45 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 85.38 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 85.16 | |
| KOG1851 | 1710 | consensus Uncharacterized conserved protein [Funct | 84.92 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 84.83 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 84.73 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 84.73 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 84.51 | |
| KOG0803 | 1312 | consensus Predicted E3 ubiquitin ligase [Posttrans | 84.5 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 84.23 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 84.16 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 84.0 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 83.92 | |
| PF11707 | 330 | Npa1: Ribosome 60S biogenesis N-terminal; InterPro | 83.89 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 83.89 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 83.79 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 83.49 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 83.44 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 83.44 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 83.3 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 83.24 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 83.21 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 82.86 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 82.62 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 82.61 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 82.16 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 81.95 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 81.86 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 81.8 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 81.44 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 81.21 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 80.91 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 80.81 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 80.44 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 80.32 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 80.3 |
| >KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-152 Score=1532.99 Aligned_cols=1759 Identities=41% Similarity=0.693 Sum_probs=1532.1
Q ss_pred HHHHHHHHHHcCCCC-chhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccC
Q 000194 24 DALNRILADLCTHGN-PKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALG 102 (1880)
Q Consensus 24 ~~~~~l~~~l~s~~~-~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~ 102 (1880)
..+..++..|++++. .+.+|++|+..+|....++++.+.+.+|.+.++++++++.+..+.+.+.||+.++..++.+...
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~f~~~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~t 84 (2341)
T KOG0891|consen 5 SVLKQYFSGLKSRNKSEQAQAARELFNYVTSELRELSAEESARFSNDLNHNIFELVHCLDSNERIGGILAIALLISFEGT 84 (2341)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccchhhHHHHHHHHHhhhc
Confidence 378899999999875 4445999999999999999999999999999999999999999999999999999999888622
Q ss_pred c-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHH
Q 000194 103 E-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMA 181 (1880)
Q Consensus 103 ~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la 181 (1880)
+ ......++.+||+.+++ +.|..++..|++++|.++..++...+++++++++.+++|+ ++..+.+|++|+...+.++
T Consensus 85 ~~~~~~~s~~~n~l~~l~~-~~~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~-~~~~~~~~~~a~~~~~~l~ 162 (2341)
T KOG0891|consen 85 EHDRKNISRLANYLRYLLP-SNDVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWL-GERQEYRRLAAVLIIKELA 162 (2341)
T ss_pred ccccchhHhHHHHHHHhhc-cCChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHh-hhhhhhhhHHHHHhhhhHh
Confidence 2 34557899999999998 5699999999999999999999999999999999999999 6777889999999999999
Q ss_pred hhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHH
Q 000194 182 ENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSL 261 (1880)
Q Consensus 182 ~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al 261 (1880)
.++|..++|+++.++..+|.+++|+++.+|..|+.|++.++..+.+|+.....+||+.+++.+..++..+. .. .|+++
T Consensus 163 ~~~P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~~~~~~~~~~~rcvd~~~~~l~~~~-~~-~~~~~ 240 (2341)
T KOG0891|consen 163 DNVPTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQREAKLKPQWYQRCVDEARHGLSSDG-VK-IHASL 240 (2341)
T ss_pred hcCcHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhccchhhhHHHHHHHHhccccccchH-HH-hhhHH
Confidence 99999999999999999999999999999999999999999999988877888999999999999988753 23 89999
Q ss_pred HHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchH
Q 000194 262 LAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSG 341 (1880)
Q Consensus 262 ~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a 341 (1880)
++++++.+....++ .+++.++.........++..++..+...+|.+|.+.+..|...|++..|.+++..+.+.+ ..|
T Consensus 241 ~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~lk~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~--~~~ 317 (2341)
T KOG0891|consen 241 LVYNELLRISDPFL-EKYDSTCVRQAKGKLLKSIVIRMTLSQILPLLAAFNPAKFQVKYLHTEMDHLLSILRKEK--TRA 317 (2341)
T ss_pred HHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhccccHHHHHHhccHHHhhhhhhhhHHHHHHHHHHHHHHhhhccc--hhH
Confidence 99999999776555 778888888888888999999999999999999999999988999999999999988433 899
Q ss_pred HHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCC---CCCchHHHHHHHHHHHhCCCchHHH-HHHHHHHHhcCCCHHH
Q 000194 342 FIALGEMAGALDGELFHYLPTITSHLREAIAPRRG---KPSLEALACVGNIARAMGPVMEPHV-RGLLDIMFSAGLSTTL 417 (1880)
Q Consensus 342 ~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~---~~~~~a~~~l~~la~~~g~~~~~~l-~~ll~~l~~~~ls~~l 417 (1880)
+..||.+|.+++..+.+|...|...|.+.+..... +-....|.|++.++.++|+.+..++ ..+|+.++.++.++.+
T Consensus 318 ~~~i~~ia~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~il~~~~~~~~~~~l 397 (2341)
T KOG0891|consen 318 FVSIGEIAVALGSSMSPYLSNILDHIRQTLPTKDLARKKFEKSVFTCIGLLASALGPADQKDLNKDILEQMFKCTLSDSL 397 (2341)
T ss_pred HHHHHHHHHHhhhhhhhhhcchhhhhhhcchhhhHHHHhcchhHHHHHHHHhhccCHHHHHhHHHHHHHHHhcCCchHHH
Confidence 99999999999999999998888888887754311 1134789999999999999776666 7899999999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-cCCCccccccCCchhHHHHHHhhcccccCC
Q 000194 418 VDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNV-MNIPQQVSDLNGSAPVQLALQTLARFNFKG 496 (1880)
Q Consensus 418 ~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~ 496 (1880)
.+++..++..+|++.+.+++++++.++.++.|..+.+++.......... .....+.++ +...+..|+++++.|.|.+
T Consensus 398 ~e~l~~l~~rl~~l~~~i~~rll~~~~~vl~~~a~~~~~~~~vl~~~~~p~~~~~~~~~--~~~~~~~a~~~l~~~~~~~ 475 (2341)
T KOG0891|consen 398 LERLFILSQRIPKLGQSIQDRLLNMTSQVLSGKAFIQPGQFTVLPKLAIPKAILQKTGD--STDDIQLAFKTLGGFKFSG 475 (2341)
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHhCccccCccccCccchhcccchhhhhccc--ccHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999988776433211110000 001111222 2223678999999999999
Q ss_pred CcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChh
Q 000194 497 HDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVT 576 (1880)
Q Consensus 497 ~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~ 576 (1880)
+....|++.++..|++++++++|+.|+.+||.++..+.. ..++++...+.+..++.+++..+++|+|+.
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~-----------~~~~~~~~~~~v~~vl~~ll~~aia~~~~~ 544 (2341)
T KOG0891|consen 476 YSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDII-----------CSQTSPHALQVVKEVLSALLTVAIADTDPD 544 (2341)
T ss_pred hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhh-----------hhcccchHHHHHHHHHHHHHHHhccCCCcc
Confidence 999999999999999999999999999999999987653 224555566789999999999999999999
Q ss_pred HHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCCh
Q 000194 577 VRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADN 656 (1880)
Q Consensus 577 vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~ 656 (1880)
+|.+++.+++ .+|+++++|+++++.++.+++|+...++..+..++|+++..||++++|++|+..+..++.++.+ +..
T Consensus 545 i~~~v~~~l~--~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~s-g~~ 621 (2341)
T KOG0891|consen 545 IRIRVLSSLN--ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFS-GMA 621 (2341)
T ss_pred hhhhHHhhhc--cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhc-chH
Confidence 9999999996 7999999999999999999999999999999999999999999999999999999999999998 888
Q ss_pred HhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHH
Q 000194 657 KCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE 736 (1880)
Q Consensus 657 ~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~ 736 (1880)
+..++.+..++.++...+..+.||+.+++..+++.+.+. .+.+..++..++++|+.++|+.+..+++.+++.+.+
T Consensus 622 r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~-----~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~ 696 (2341)
T KOG0891|consen 622 RTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDP-----SSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIK 696 (2341)
T ss_pred HhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhcc-----chhhHHHHHHHHHHHHHhccchhhhccchHHHHHHH
Confidence 888999999999999999999999999999999999986 668888999999999999999999999999999999
Q ss_pred HHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccC
Q 000194 737 ALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLS 816 (1880)
Q Consensus 737 ~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~ 816 (1880)
.++|.++..+|.++++++|++.+.+|+++.||.++|.+++.+.+.++++....+|+++++.+|.+|++|||+++......
T Consensus 697 ~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~~~~~~~~~~ 776 (2341)
T KOG0891|consen 697 MLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPYKHKVTEGTS 776 (2341)
T ss_pred HHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchhHHHHHhhhh
Confidence 99998888999999999999999999999999999999999999999888999999999999999999999987654321
Q ss_pred CCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCC
Q 000194 817 GSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY 896 (1880)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~ 896 (1880)
..... . ........+....... .+..++||+.+.+..|+.+++|++++.+|..++++++.||.++|.+|..|
T Consensus 777 ~~~~~-~----~~~k~~~~~~~~~~~~---~~~~~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~ 848 (2341)
T KOG0891|consen 777 ASKIS-S----EQIKSDIDISLLESGV---NPSNDEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLF 848 (2341)
T ss_pred hHhhh-h----ccccccchHHHHHhhh---hhhhhhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhh
Confidence 00000 0 0000000111011111 23448899999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHH
Q 000194 897 LPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLA 976 (1880)
Q Consensus 897 l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~ 976 (1880)
+++++|.++.+.+.+..+.+++++.+++.++-.+++|+++|++.++..+.++|+... .++.+++.+++.+..+
T Consensus 849 l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~~~~~~h~~~~~~~i~~~i~~~~~~~~-------~l~~~~~~l~~~i~~~ 921 (2341)
T KOG0891|consen 849 LDQVIPTLIDVMRSCPPNLREFYFQQLTSLVAIVRQHIRPYMESIFTLIKDFWPPDT-------SLQITIISLIEDIAVA 921 (2341)
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHhhhhhhhccchhHhhhhhhHHHHHHhhhhhHH-------HHHHHHHHHHHHHHHH
Confidence 999999999999999899999999999999999999999999999999999997322 1345789999999999
Q ss_pred hhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCC-CcHHHHHHHHHHHHh
Q 000194 977 LNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVD-APVDIRRAAIETLTR 1055 (1880)
Q Consensus 977 l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~l~~~-~~~~vr~~ai~~l~~ 1055 (1880)
++.+|+.|+|..++..+..+ ..+++.++.....++.++..+|...+.|.|.+.|.++++++.. .+..+|..++.+++.
T Consensus 922 l~~~f~~~l~~~~~~~l~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~ 1000 (2341)
T KOG0891|consen 922 LGGEFKKYLPELLPTMLTVL-QHDKSKDRVVSRKVLQSLQKFGSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGR 1000 (2341)
T ss_pred HHhHHHHhhhhhccchheee-cccccchHHHHHHhhHHHHhcCccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHH
Confidence 99999999999999999999 5567777888888999999999999999999999999999875 678899999999999
Q ss_pred hcccccccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHhCCCCchhHHHHHHHHhcCC
Q 000194 1056 LIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRRE 1135 (1880)
Q Consensus 1056 l~~~~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~fip~i~~~l~~~~~~~~~~~~~~~~~~~~~ 1135 (1880)
+..++++..|.++|++++.|.+... .+++..++++|+.+..++|..|.+|+|++.+.+...++.|..|+..+.++..+.
T Consensus 1001 l~~~~~~~~~~s~i~~~~~r~l~~s-~el~~~~~~~l~~l~~~~~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (2341)
T KOG0891|consen 1001 LAQQVDLSEYASRIIHPLVRVLSSS-PELRDVIMDTLIALVKQLGKDFAIFIPMVNKKLVEHRIQHSTYDELVSKLLQNE 1079 (2341)
T ss_pred HHHhhHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHhhcCceeehHHHHHHHHhhhhhhhHHHHHHHHHHhcCC
Confidence 9999999999999999999999987 999999999999999999999999999999999999999999999999999888
Q ss_pred CcccCchhHhhhhccCCccccCCCCCCCCCCCCCCCchhhhh-ccccccCCCCChhhHHHHHHHHHHHHHhcCCCHHHHH
Q 000194 1136 PLILGSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQ-LRGHQASQRSTKEDWAEWMRHLSIELLKESPSPALRT 1214 (1880)
Q Consensus 1136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~w~~W~~~~~~~ll~~sps~~ir~ 1214 (1880)
+++.+......+. .|.... .+...+.. +....... .+.|...++.+++||.+|.++.++.+++++||+++|+
T Consensus 1080 ~l~~~~~~~~~~~--~~~~~~----~~~~~~~~-~l~~~~~~l~~~w~~~~~~s~d~~~e~~~~~~i~~lk~~~s~~lr~ 1152 (2341)
T KOG0891|consen 1080 PLPDDVLSAGESD--RPSRQM----NSDPADVT-KLPVNQNALKKAWESSQRVSKDDWQEWIRRLSIELLKESPSHALRA 1152 (2341)
T ss_pred ccCcccccccccc--Cccccc----cccccccc-hhhhhHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhcchhhHHH
Confidence 7765432111100 000000 00000000 11111111 2334467889999999999999999999999999999
Q ss_pred HHHHHhhChhhHHHhHhHHHHHHHHhhcHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 000194 1215 CARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGAL 1294 (1880)
Q Consensus 1215 c~~la~~~~~la~~Lf~~aF~s~w~~l~~~~~~~l~~~l~~~l~~~~~p~~i~q~ll~l~efm~~~~~~l~i~~~~l~~~ 1294 (1880)
|..++..+.++++++||++|.|||.+++++.|..+.+.++-+++++++| +++|+++|++|||+|+++|+||+..+|+..
T Consensus 1153 ~~~l~~~~~~l~r~~f~~~~~s~w~e~~~~~q~~l~~~le~~~~~~~i~-e~~q~l~nl~ef~eh~~~plpi~~~~L~~~ 1231 (2341)
T KOG0891|consen 1153 CSSLAQAYYPLARDLFNAAFVSCWTELDSSYQNDLIKSLEIALSSPDIP-EIIQTLLNLAEFMEHDDKPLPIPIKTLGLY 1231 (2341)
T ss_pred HHhhhhhccccchhhhhHHHHHHhhhcccchhhhhhhhHHHHHhCCccH-HHHHhhhhHHHHHHhcccCCCcchhhHHHH
Confidence 9999999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHH
Q 000194 1295 AEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDAL 1374 (1880)
Q Consensus 1295 a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~e~lg~W~~Al 1374 (1880)
+.+|++|++||+|+|.+|... ...++++.++.+++.++++|.+.|+.+++++....++++.|||++.+|++|+
T Consensus 1232 ~~~c~a~~~~l~y~el~~~~~-------~~~~~i~sl~~~~~~~q~~~~a~~i~~~a~~~~~l~~~e~w~e~l~~~~d~l 1304 (2341)
T KOG0891|consen 1232 AEKCRAYAKALHYKELEFLKE-------PSPDTIESLISINNKLQQREAAIGVLKYAQQHSELQLKETWYEKLHRWEDAL 1304 (2341)
T ss_pred HHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHhhcccchhHHHhccHHHHHHhHHHHHHhhhcccccccchhHh
Confidence 999999999999999999754 2357899999999999999999999999998888999999999999999999
Q ss_pred HHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcC
Q 000194 1375 KAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLD 1454 (1880)
Q Consensus 1375 ~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~ 1454 (1880)
.+|+........ ..+...|.|+|+.++|+|+.+.......|.....+.+..++|.++.++|.+++|+.+.+|++.++
T Consensus 1305 ~a~~~~~~~~~~---~~e~~~g~~~~~~~lg~w~~l~~~~~~~~~~~~~~~~~~~ap~a~~~~~~~~~w~~~~~~~s~~~ 1381 (2341)
T KOG0891|consen 1305 AAYELREKAGDS---SFELRMGKMRCLEALGDWDELSQLASEKWEVAGQEAKHKMAPLAAAAAWGLGQWDTMAEYVSVMS 1381 (2341)
T ss_pred hhhhcccchhhh---hHHHHhhhhhhhhhhhhHHHHhhhhcccCCCcchhHHHHHHHHHHHhhhccccchhhhhhccccc
Confidence 999987643222 24678999999999999999998888899888888899999999999999999999999998877
Q ss_pred CCCcchhhccccccccCCCCCchHHHHHHHHHHhcC----------------------hhhhHHHHHHHHHHhHhhhhHH
Q 000194 1455 DGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK----------------------VLESYERAYSNMVRVQQLSELE 1512 (1880)
Q Consensus 1455 ~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~----------------------~~esy~ray~~l~~lq~L~ELe 1512 (1880)
.. +.+..|+++++++|+.. ..|||+|+|..++..|++.|+|
T Consensus 1382 ~~-----------------~~~~~~~~a~~a~~~~~~~~~~~~~~~~~dll~~e~~~~~~Es~sr~y~~~~~~~~~~e~E 1444 (2341)
T KOG0891|consen 1382 ED-----------------SQDKAFFRAILALHRDEFEKAVKLIERARDLLDTELTAMAGESYNRAYGVMVRAQMLAELE 1444 (2341)
T ss_pred cc-----------------chhhHHHHHHHhhhhhHHHHHHHhcccHHHHHHHHHHHHHhhHHhhchhhhhhhhhhhhHH
Confidence 53 56788999998888742 4699999999999999999999
Q ss_pred HHHHhhcCCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHH
Q 000194 1513 EVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTL 1592 (1880)
Q Consensus 1513 E~i~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L 1592 (1880)
|+++|++.+ +++..+.+.|.+|+.+|++..++|++++.+|.++++|+++..+|+||+.+|||+|+..++.+.+
T Consensus 1445 ~~~~~k~~~-------~r~~~i~~~~~~~l~~~q~~~~~wq~~lr~~~~v~~p~~~~~~~ik~a~~cr~s~~~~l~~~~l 1517 (2341)
T KOG0891|consen 1445 EIIEYKKLP-------ERRPIIAKTWWKRLQGCQKNVDDWQRILRVRSLVLSPQEDMEMWIKFASLCRKSGRLALARKLL 1517 (2341)
T ss_pred HHHHhhccc-------chhHHHHHHHHhhHHHhhccHHHHHHHHHHhhhccCCCcchHHHHHHHHHhHHhHHHHHHHHHH
Confidence 999999765 4567789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccc-ccc-ccccCcchhh
Q 000194 1593 VKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAAS-TSL-TTATSTNVPL 1670 (1880)
Q Consensus 1593 ~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~l 1670 (1880)
..+++-.+............|.+++++.|++|..+. ..+|++.+..+...+..+....++.. ... .+.......+
T Consensus 1518 ~~~L~~~~~~~~~~~~~~~~P~~v~a~~~~~~~~~~---~~~~~~~~~~~~s~l~~d~~~~~~~~~~~~~~~~~~~~~~l 1594 (2341)
T KOG0891|consen 1518 NELLERDPSSDLPLPLKARLPQVVYAYLKYLWATDS---KDEAINTLQEFTSTLNSDLGSDPDELLSEPTEAEKQEYTKL 1594 (2341)
T ss_pred HHHHhcCccccccccccccChHHHHHHHhHHHhhcc---chHHHHHhHHHHHHHHhhcCCCchhhhhcccchhhhHHHHH
Confidence 998876654432222244579999999999999985 57899999887766554322111000 000 1112445788
Q ss_pred HHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhc---c---------------
Q 000194 1671 IARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTL---R--------------- 1732 (1880)
Q Consensus 1671 ~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~---~--------------- 1732 (1880)
.|+|++++|+|......+++...++.++++|..|+.+++.|||+||.||..||+.+...+. .
T Consensus 1595 ~a~~~l~~~~w~~~~~~s~~~~~~~~~L~~y~~at~~d~~~ykawh~~a~a~f~~V~~l~~~~~~~~~~~~~~~~~~~~~ 1674 (2341)
T KOG0891|consen 1595 LARCFLKLGEWQQLLQDSWRTSALDGILQSYLLATQFDRGWYKAWHQWALANFEVVQMLKQVTKAKYAPGANIWNMPDYL 1674 (2341)
T ss_pred HHHHHHhhccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccCCccccccchhhc
Confidence 9999999999999888888888899999999999999999999999999999998875211 0
Q ss_pred ---CCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHHHHHHHHH
Q 000194 1733 ---GLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQII 1809 (1880)
Q Consensus 1733 ---~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQLi 1809 (1880)
.+......|+++|++|||+++.++ .++.+||++|+++|||+||+..+|..++..++..++++.|+.++|||+
T Consensus 1675 ~~~~~~~~~~~~~v~avk~ff~~~~~~-----~~s~lqdtlrl~~L~f~~g~~~~v~q~i~~~~~~~~i~~wl~~ipqLi 1749 (2341)
T KOG0891|consen 1675 GSNSDLMLIHHYAVPAVKGFFRSISLS-----PGSSLQDTLRLLTLWFDFGDNKDVYQALLEGINLIPIDTWLEVIPQLI 1749 (2341)
T ss_pred cCcCCccchHHHHHHHHHHHHHHHhhc-----ccccHHHHHHHHHHHHhcCCCchHHHHHHhhhhHhhHHHHHHhHHHHH
Confidence 111234579999999999999996 345599999999999999999999999999999999999999999999
Q ss_pred HhccCCChhHHHHHHHHHHHHHhhCchhhHHHHHHHhcCCcHHHHHHHHHHHHHHhhccccccccccc
Q 000194 1810 ARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGVLVDQSCY 1877 (1880)
Q Consensus 1810 aRi~~~~~~v~~~l~~lL~~i~~~hPqa~ly~L~~~~kS~~~~R~~~a~~Il~~~~~~~~~lv~~a~~ 1877 (1880)
|||+.+...+++.+++++..+|+.||||++|+++++++|.+..|+++|..|+++|+.|++.||+||.+
T Consensus 1750 ari~~~~~~~~~l~~~ll~dig~~~pqA~iy~ltvas~s~~~~r~~~a~~ile~m~~~~~~Lv~~a~l 1817 (2341)
T KOG0891|consen 1750 ARIHTPDQLVVQLVLQLLSDIGRAHPQALVYPLTVASKSKSVARQKAALSILEKMREHSPTLVRQARL 1817 (2341)
T ss_pred HHHhccchHHHHHHHHHHHHhhhcchhhhhHHHHHHHhcchHHHHHhHHHHHHHHHHhhHhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999975
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-56 Score=582.23 Aligned_cols=639 Identities=17% Similarity=0.274 Sum_probs=496.6
Q ss_pred HHHHHHHHHHHHHhcCC----CHHHHHHHHHHhhChhhHHHhHhHHHHHHHHhhcHHHHHHHHHHHHHHhCCCCC-----
Q 000194 1192 WAEWMRHLSIELLKESP----SPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNI----- 1262 (1880)
Q Consensus 1192 w~~W~~~~~~~ll~~sp----s~~ir~c~~la~~~~~la~~Lf~~aF~s~w~~l~~~~~~~l~~~l~~~l~~~~~----- 1262 (1880)
+.+|+.+++..+|...+ ++.+.+|+.....+..+...|.|++.+-|....+++.|..+.+.+..+|.....
T Consensus 1237 ~~eW~~~w~~~Li~ka~~s~~~~ifs~cs~~~k~D~~~t~fLlP~ill~vll~~~~e~~~~V~~eil~vl~~~~~~t~ns 1316 (2382)
T KOG0890|consen 1237 YREWLSRWSLKLIAKAESSEASPLFSLCSIIVKDDFKVTRFLLPYILLDVLLVCEEEDRNSVTEEILSVLDEAATNTINS 1316 (2382)
T ss_pred HHHHHHHHHHHHHHhccccccchHHHHHHHHHhccchhHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhccccccccc
Confidence 88999999999888733 567777777777777899999999999999999999899999998888876321
Q ss_pred -----ChHHHHHHHHHHHHhhhCC----------C----------------------------CC-CCCHHHHHHHHHhc
Q 000194 1263 -----PPEILATLLNLAEFMEHDE----------K----------------------------PL-PIDIRLLGALAEKC 1298 (1880)
Q Consensus 1263 -----p~~i~q~ll~l~efm~~~~----------~----------------------------~l-~i~~~~l~~~a~~c 1298 (1880)
.+-.+|++..+.||+.+.. + .| -||..+|+.++.+|
T Consensus 1317 ~~~~~d~~~~~~VF~~ld~l~qw~r~~~q~~~~~k~~~sk~~R~~~~~~~~Tt~~~~~~~v~~fL~~iP~~tLa~aSfrc 1396 (2382)
T KOG0890|consen 1317 RGTASDRLCVQFVFYVLDYLYQWARHKKQELAEKKKIWSKVNRFWKSIMSWTTTGEDIEGVQSFLDLIPSDTLARASFRC 1396 (2382)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhheeeeccccCCCchhhhHHHHhhccHHHHHHHHHhh
Confidence 1346788888888776531 0 02 47888999999999
Q ss_pred cchhhhhhhccchhcccccccCCCCcHH-HHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHHHHH
Q 000194 1299 RAFAKALHYKEMEFEGARSNRMDANPVA-VVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAY 1377 (1880)
Q Consensus 1299 ~a~a~AL~y~E~~~~~~~~~~~~~~~~~-~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~e~lg~W~~Al~~y 1377 (1880)
++|++|++|+|.++..... .+..+ ..-.|..+|..|+|||++.|+.......+.+..+-.-+|..|+|.+|..||
T Consensus 1397 ~~y~RalmylEs~~~~ek~----~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~~qil~~e~~g~~~da~~Cy 1472 (2382)
T KOG0890|consen 1397 KAYARALMYLESHRSTEKE----KETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSLYQQILEHEASGNWADAAACY 1472 (2382)
T ss_pred HHHHHHHHHHHHhccccch----hHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccHHHHHHHHHhhccHHHHHHHH
Confidence 9999999999998432211 11222 334556699999999999999984333334444444599999999999999
Q ss_pred HHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCCCC
Q 000194 1378 TNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGD 1457 (1880)
Q Consensus 1378 ~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~ 1457 (1880)
++..+.+++. ...+.|.++|..++|+++++....++.|.. .+++..++..+..+|+|++++||.+++|.. +.+.
T Consensus 1473 e~~~q~~p~~---~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~--~~n~ 1546 (2382)
T KOG0890|consen 1473 ERLIQKDPDK---EKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS--DRNI 1546 (2382)
T ss_pred HHhhcCCCcc---ccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh--cccc
Confidence 9998765442 235789999999999999999988888754 456677888899999999999999999988 3222
Q ss_pred cchhhc-cccccccCCCCCchHHHHHHHHHHhcC--------hhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchh
Q 000194 1458 ESKLRG-LGNTAANGDGSSNGTFFRAVLLVRRGK--------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAE 1528 (1880)
Q Consensus 1458 ~~~~~~-l~~~~~~~~~~~~~~f~~a~~~i~~~~--------~~esy~ray~~l~~lq~L~ELeE~i~~~~~~~~~~~~~ 1528 (1880)
.+.-.. +|..+........-.|+..+--.+... ..+||.|+|+.++++|++.|+++.++.......+.
T Consensus 1547 e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~--- 1623 (2382)
T KOG0890|consen 1547 EYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDE--- 1623 (2382)
T ss_pred cchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccc---
Confidence 221122 455544444444445555443322211 23499999999999999999999998664322111
Q ss_pred hHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcCCc-------ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 000194 1529 GRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPT-------EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPE 1601 (1880)
Q Consensus 1529 ~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~-------e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~ 1601 (1880)
.-..-...|..|+..+++++...++||+.|+.++... +..++|+++|++||++|+++.|.++|.++...
T Consensus 1624 -~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~--- 1699 (2382)
T KOG0890|consen 1624 -DSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES--- 1699 (2382)
T ss_pred -cccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc---
Confidence 1111237899999999999999999999999998631 34899999999999999999999999988754
Q ss_pred CCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhh
Q 000194 1602 TSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSW 1681 (1880)
Q Consensus 1602 ~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w 1681 (1880)
..|.+.+|+||++|.+|+ ...|+..|++.+...-.+. +. ..+. .+ ...+-....++.+++|+|
T Consensus 1700 ---------r~~~i~~E~AK~lW~~gd---~~~Al~~Lq~~l~~~~~~~--~~-~~~~-~p-~~~n~~i~~~~~L~~~~~ 1762 (2382)
T KOG0890|consen 1700 ---------RLPEIVLERAKLLWQTGD---ELNALSVLQEILSKNFPDL--HT-PYTD-TP-QSVNLLIFKKAKLKITKY 1762 (2382)
T ss_pred ---------ccchHHHHHHHHHHhhcc---HHHHHHHHHHHHHhhcccc--cC-Cccc-cc-hhhhhhhhhhHHHHHHHH
Confidence 258999999999999996 4789999999885432210 00 0000 00 112234456899999999
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCC--CchhhHHHHHHHHHHHHHhhcccc
Q 000194 1682 KRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLP--SVAPQFVVHAVTGYFHSIACAAHA 1759 (1880)
Q Consensus 1682 ~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~--~~~~~~~~~ai~~y~~si~~~~~~ 1759 (1880)
+.++. .-..++++++|+.|++..|+|++.+++.|.|.++++..+.....+ .....|++ ++-.|++|+.+|
T Consensus 1763 ~~es~----n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~-~~~~~~~sl~yg--- 1834 (2382)
T KOG0890|consen 1763 LEESG----NFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLK-AIYFFGRALYYG--- 1834 (2382)
T ss_pred HHHhc----chhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHH-HHHHHHHHHHhc---
Confidence 99875 245799999999999999999999999999999998876432211 13345777 999999999885
Q ss_pred CCCcchHHhHHHHHHHHHhcCCcH-----------------HHHHHHHhcccCCChhhHHHHHHHHHHhccCCChhHHHH
Q 000194 1760 KGVDDSLQDILRLLTLWFNHGATE-----------------EVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVREL 1822 (1880)
Q Consensus 1760 ~~~~~~~q~~~RlLtLwf~~g~~~-----------------~v~~~~~~~~~~ip~~~wl~~ipQLiaRi~~~~~~v~~~ 1822 (1880)
+.+.+|.||||+|||+|+|... .++..+.+++..+|+|.||++.+||+|||+||+.+|.++
T Consensus 1835 --~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y~f~ta~sQLlSRicH~~~dV~~v 1912 (2382)
T KOG0890|consen 1835 --NQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPTYQFYTAYSQLLSRICHPNQDVARV 1912 (2382)
T ss_pred --chhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcCCchHHHHH
Confidence 6889999999999999985432 245667889999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCchhhHHHHHHHhcCCcHHHHHHHHHHHHHHhhccc---ccccc
Q 000194 1823 IQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSG---VLVDQ 1874 (1880)
Q Consensus 1823 l~~lL~~i~~~hPqa~ly~L~~~~kS~~~~R~~~a~~Il~~~~~~~~---~lv~~ 1874 (1880)
|.+||.++..+|||+++|.+++.+||..+.|+++|+.|+++-+.+++ +||.+
T Consensus 1913 l~~II~~l~~~YPqq~lW~~~a~~kS~~p~R~~R~keIL~k~~~~~~~~~~l~~d 1967 (2382)
T KOG0890|consen 1913 LKHIIAKLVLAYPQQTLWQSAALSKSNVPSRVERCKEILTKSRRQKPDYKKLLSD 1967 (2382)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 99999999999999999999999999999999999999998887666 55533
|
|
| >COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-53 Score=595.91 Aligned_cols=1512 Identities=22% Similarity=0.252 Sum_probs=1094.7
Q ss_pred hHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchh
Q 000194 275 MMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDG 354 (1880)
Q Consensus 275 ~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la~~v~~ 354 (1880)
+...++.++........+....++ .+.-+++....+.+.-|.. |.+..|+.++....+......... +++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~s~~f~~-~~~~~~~~i~~~~~~~~~~~~~~~-------~~~- 119 (2105)
T COG5032 50 LSNVNDLVRNSTQSLLNTISNLIK-IVKFVLPLKSFFLSPIFAK-LRALPMTKILCISADTYCLSLSIK-------ALA- 119 (2105)
T ss_pred hcchHHHHHhhhhhhhhhhhhhhh-HHHHHHHHHHhhccHHHHH-HhccchhHHhhhhhhhhhhcccch-------hhh-
Confidence 445666677777776677777777 7888899999999999998 988888886665543322221111 222
Q ss_pred hhhhhhhHHHHHHHHhhcCCC-CCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChH
Q 000194 355 ELFHYLPTITSHLREAIAPRR-GKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLP 433 (1880)
Q Consensus 355 ~~~p~l~~i~~~l~~~l~~~~-~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~ 433 (1880)
+.++++.+...+++.+ .+- -+.+ ..|.|+|..+..+++.+..++..++.....+.+++........+.+.++.+.+
T Consensus 120 -~~~~~~~~~~~~~~~~-~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~e~~~~~~~ 196 (2105)
T COG5032 120 -DDESLTTILKTIRELL-SKFLLRLR-LLFLFIGLLAQKFSEAQSKLFFKLLLSILKEILSDAYEALLNDLLENLKSLKE 196 (2105)
T ss_pred -ccHHHhHHHHHHHHHh-HHHHHHHH-HHHHHHHHHhhhhhHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHhhcccchH
Confidence 4678888888888888 432 1222 67899999999998887777766665556667788888888888899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-------cCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHH
Q 000194 434 TIQDRLLDCISFVLSKSHYSQARPAATPIRGNV-------MNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDS 506 (1880)
Q Consensus 434 ~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~ 506 (1880)
+++.++.+++...+.|..|.............. .....-.....+.+.....+..+..+.+. ..+..+++..
T Consensus 197 ~~~~~l~~~l~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~-~~~~~~~~~~ 275 (2105)
T COG5032 197 TLQNRLLPLLFNISDGNYFKVEIGRKLLDHLNALGQILDCQKIAKITKSFRSLPVIIKKFLNLLLIKVS-YYLPSFFRLS 275 (2105)
T ss_pred HHHHHHHHHHHhhcCccceeccccccchhhHHHhhhhhhccchhhhhhhhcCChhHHHHHHHHhhhHhe-eeccchhhhh
Confidence 999999999998888876654322211000000 00000000011122223333333333222 2344677888
Q ss_pred HhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000194 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY 586 (1880)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1880)
...|+++.+..+++.+..+||.++.....+ .++.....+.+...+.+++...+.++.+++|..++..+.
T Consensus 276 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~i~-----------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (2105)
T COG5032 276 LLSYLDHFETDLFKTFLVTSCFLFFVDEIC-----------KPESEHLAEEVSEKLSKFLTIEIIDSFPEIRISALSSLL 344 (2105)
T ss_pred hhHhhcCcchhHHHHHHhhheeeeeecccc-----------CcccccchHHHHHHHHHHHhhhcccccHHHHHHHHhccc
Confidence 889999999999999999888777554421 122233455667777788888889999999999666663
Q ss_pred CCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHH
Q 000194 587 GNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLL 666 (1880)
Q Consensus 587 ~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L 666 (1880)
..||.+++.++.+...+...+|..+..+..+....+++...+|+.+.|.+++.+.+....+..+ +.....+.....+
T Consensus 345 --~~fd~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~~l~~~-~~~~~~~~~~~~~ 421 (2105)
T COG5032 345 --VIFDYHLALPDAVRLLFGESNDKVFLISELALDSTGRLLRVLPARVLPSLFEFLLSLLTVLKIS-GLILEFEISAQLL 421 (2105)
T ss_pred --cccCccccCHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhccHHhhhhHHHHHHHHhhhhhhhc-chHHHHHHHHHHH
Confidence 6888899999999999999999999999999999999999999999999999999999988887 6777777888888
Q ss_pred HHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcC-CchhhhHHhHHHHHHHHHhcCCchh
Q 000194 667 GCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG-FGMRQYISELMPLIVEALLDGAAVT 745 (1880)
Q Consensus 667 ~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g-~~~~~~~~~l~p~l~~~l~d~~~~~ 745 (1880)
..++........++..+.+..+++...+. ........+..+|++...+| ..+.+|.....+.+...+++..+..
T Consensus 422 ~~~i~~~~~l~~~~~~~~~~~~l~~~~d~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 496 (2105)
T COG5032 422 CNLIRSSNQLLTSLISPYFLFILPKCIDS-----SNSEISYRVENLGELKDILGLDRITDYQALSLRLIIVSIQLRSFVF 496 (2105)
T ss_pred HHHHhhhHHhhhhhcchhHHhhhhHhhcc-----ccHHHHHHHHHHHHHHHHhhhhhccHHHHHhhhHhHHHHHHhhccc
Confidence 88998888888888888888888888875 35566677788999998888 5678888888888888888877778
Q ss_pred hHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCccccccc
Q 000194 746 KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRA 825 (1880)
Q Consensus 746 ~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~ 825 (1880)
+|+++..++++++. .++.++.++|..+.....+.+......+|+.+.++.|.+|++||+.++...+......
T Consensus 497 ~~~~~~~~~~~l~~---~~~~~~l~~~~~~~~p~~I~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~s~~~~----- 568 (2105)
T COG5032 497 KREAINQIFKQLAS---IVIKPFLDYPKRLDLPIKIVTVVYVALLRRPTEKLSGVLGSIDKYSHIESEEMSSSDF----- 568 (2105)
T ss_pred hhhHHHHHHHHHHH---hhhhhhhhhHHHhCcceeEEEeecchhhhHHHHHHHHHHHHhhHHHHHHHhcccccCC-----
Confidence 99999999999987 6678888888877777777666655666999999999999999987765433111000
Q ss_pred CCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHH
Q 000194 826 ASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLF 905 (1880)
Q Consensus 826 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll 905 (1880)
........+ ....+....++.++.|.++....|+.+|+++..+.+|.+++++++.++..++..+.++.+.. |.++
T Consensus 569 --~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~ 643 (2105)
T COG5032 569 --PWTKNPVGL--QLLAVYGFIRSIDDLYFTVSDPTLIEILKLPVLSIVHSAIIEAIMLIKLSLGSESSQFEDLN-PSFL 643 (2105)
T ss_pred --hhHhcchhh--HHHHHhccccccchhhhhhhhHHHHHHhhhHHhhcccCchHHHHHHHHHHHHhhhccccccC-chHH
Confidence 000000010 00001111356778888888889999999998877776679999999999999999999888 9999
Q ss_pred HHHhcCCcchhHHHHHH-HHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhcc
Q 000194 906 HTVRTCDDYLKDYITWK-LGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTH 984 (1880)
Q Consensus 906 ~~l~~~~~~~~~~~~~~-l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~y 984 (1880)
....+......+..+++ +..++.++.++++.++..+......+|.... -.+..++..++.+...+..+++.+
T Consensus 644 ~i~~n~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~~e~~~~ 716 (2105)
T COG5032 644 YIFSNNSISDILFYFQNFLELIVIAFFPLIRSEIIGIVLISSLFSKTWI-------LLKLLLIAFISKLISALQGELKML 716 (2105)
T ss_pred HHHHhccHhHHHHHHHHHHHHHHHhhccchHHHHHhHHHHHHHHHHhhh-------hhHhhHHHHHHHHHHHhccchhhh
Confidence 99888876666666665 8888889999999999888877776666311 012234567888887777789889
Q ss_pred chhhHHHHHHhcccc-cccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHH-HHhhcccccc
Q 000194 985 LPVILPCCIQVLSDA-ERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIET-LTRLIPRVQV 1062 (1880)
Q Consensus 985 l~~l~p~ll~~l~~~-~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~-l~~l~~~~~~ 1062 (1880)
.+.++...+.....- +...+......++..+..++..++.+++.++|.+.++.+.... .....+.-+ ++.++...++
T Consensus 717 ~~~~~~~~~~l~~~~~~~~~s~~~~~~i~~~~~~~~~~l~~~~~~~l~~i~~~~e~~~~-~l~~~~~i~~~~~f~~~~n~ 795 (2105)
T COG5032 717 APTLFTLFLVLVERYLDVEYSSVSFKLLLVILVYFGGNLESLVLLILDLIVMLVEYTEL-GLQESIFIERLSQFFKFKNL 795 (2105)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhcccChhHHHHHHHHHHHHHHHhhhhcc-ccHHHhHHHHHHHHHHhhhh
Confidence 888888887776521 1111111223455666778888899999999988888865422 333444433 6777777888
Q ss_pred cchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcccccc-chhHHHHHH-HhCCCCchhHHHHHHHHhcCCCcccC
Q 000194 1063 TGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTI-FIPSIHKLL-LKHRLRHKEFEEIEGRLRRREPLILG 1140 (1880)
Q Consensus 1063 ~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~-fip~i~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ 1140 (1880)
..+++++++++.+.+... ..++...++.++.+..+.+.++.. |+|.+...+ ...++.|+.|..++++-.++++++..
T Consensus 796 ~~~~~~l~~~l~~~l~~~-~~l~~~~~~~~~~l~~~~~~~~~~~fi~~~~~~l~~~~~~~~~~l~~l~~~~~k~~~~~~~ 874 (2105)
T COG5032 796 SENASRLLPPLMDNLSKS-HELRCVSEDDVSALLIQLLTDRVICFIPVINSSLGDSRRIFLSLLAQLLDDSLKEESLPYN 874 (2105)
T ss_pred HHHHHHHHHHHHHHHhhh-HHHHhhhHhhHHHHHHHHhhhhhhhhhhhHHHhhHHHHHHHHHHHHHHhhcccccccchhh
Confidence 899999999999999877 889999999999999999999998 999887777 56667788888888888777766542
Q ss_pred chhHhhhhccCCccccCCCCCCCCCCCCCCCchhhh--------hccccccCCCCChhhHHHHHHHHHHHHHhcCCCHHH
Q 000194 1141 STAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQK--------QLRGHQASQRSTKEDWAEWMRHLSIELLKESPSPAL 1212 (1880)
Q Consensus 1141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~w~~W~~~~~~~ll~~sps~~i 1212 (1880)
..-. ..... .+. . ...+...+... ....|..++..+++.|++|..++.++++++.|+.++
T Consensus 875 l~~~------~~~~~--~~~--~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~l 942 (2105)
T COG5032 875 LNVD------RGTDL--REF--F--QTVKSKAEVLSMLPFVQSILFEAWNRVDFLLKDFWQEELDNLLVALLKELPFMAL 942 (2105)
T ss_pred ccee------eceec--ccc--c--cChHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHhccchHHh
Confidence 1100 00000 000 0 00000000001 001122556789999999999999999999999999
Q ss_pred HHHHHHHhhChhhHHHhHhHHHHHHHHhhcHHHHHHHHHHHHHHhCCCCCChHHHHHHH---HHHHHhhhCCCCCCCCHH
Q 000194 1213 RTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLL---NLAEFMEHDEKPLPIDIR 1289 (1880)
Q Consensus 1213 r~c~~la~~~~~la~~Lf~~aF~s~w~~l~~~~~~~l~~~l~~~l~~~~~p~~i~q~ll---~l~efm~~~~~~l~i~~~ 1289 (1880)
+.|+.++..+.++++++|+..+..||.++....++.+...+..++..+..|+.+.+..+ |+.||++|..+.++++..
T Consensus 943 ~~~s~l~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~ 1022 (2105)
T COG5032 943 RDCSILSDLYFMLGRELWNSVSFECWLELMNSYKRLLIKSLKSKLHLPTIPILILQMLLDSKNLTEFTEHQLKNLPLPSL 1022 (2105)
T ss_pred hhcchhHHHHhhccHHHHhHHhHHHHHHHhhhhhHHHHHhHHHHhhcCCCCchhhhhhhhhcchhhhhhhhhheecchhh
Confidence 99999999899999999999999999999988999999999999999999999999999 999999999999999888
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcC
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQR 1369 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~e~lg~ 1369 (1880)
..+.....|+.+++++|+.|.++-.. .....++.+++++..+++.|...|+..........++++.|++.+++
T Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~si~t~ls~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 1095 (2105)
T COG5032 1023 SIGFYESLCSFLAKLLHDEELYFFPL-------LFVSSLETLLSVNYHINQLDLRPNILKHFGSFVRFQLKPHLVKYLQR 1095 (2105)
T ss_pred hhhHHHHHHHHHHHHhHHHHHHhccc-------chHHHHHHHHhhhhhhhhhhhccCcchhhhhhhHHhhhHHHHHHHHH
Confidence 88899999999999999999988532 12478899999999999999999977665555556667899999999
Q ss_pred HHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHH
Q 000194 1370 WDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEY 1449 (1880)
Q Consensus 1370 W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~ 1449 (1880)
|.+++..|....... . ...+...+.+++....+.|+....+++..|-......|.-..+.++.++|..|.|+....+
T Consensus 1096 ~~~~l~~~~~~~~~~-~--~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~q~~ 1172 (2105)
T COG5032 1096 WYEALNRYFELLSKG-D--RLFAISFTKLRNVDALGKLELYSSLAEIDMFLSLHRRRKLLETLVATAYEQVGEWYKAQQL 1172 (2105)
T ss_pred HHHHHHHHHHHHhhc-c--chhHHHHhhhhhhhHHHHHHHHHHHHHHhhhhccCcchhhhhHHHHHHHHHHHhHHHHHHH
Confidence 999999998877543 1 2245678999999999999998888876553333333455677899999999999999999
Q ss_pred HhhcCCCC-cchhhccccccccCCCCCchHHHHHHHHHHh-c---------ChhhhHHHHHHHHHHhHhhhhHHHHHH--
Q 000194 1450 VSRLDDGD-ESKLRGLGNTAANGDGSSNGTFFRAVLLVRR-G---------KVLESYERAYSNMVRVQQLSELEEVID-- 1516 (1880)
Q Consensus 1450 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~-~---------~~~esy~ray~~l~~lq~L~ELeE~i~-- 1516 (1880)
.+.+.... ....... ...... ...+...-..+..+.. . ...++|.+++-...+.+...|++|++.
T Consensus 1173 ~e~~~~k~~~~~~~~s-~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~i~~~~~w~~a~~~~~~~~~~~~~~e~~~~~ 1250 (2105)
T COG5032 1173 YEVAQRKARSKEFPFS-LQYLYW-HINDIDCADKLQSVLAELSLVTGISELLLEESWRRALFSNIKDSLESELEEIIDGM 1250 (2105)
T ss_pred HHHHhhhcccccCchh-hHHHHH-cccchhhHhhhhhhhhhcccccchhhhccchhHHHHHhhhHHhhhhhhhhHHhhhh
Confidence 88764321 0000000 000000 0000111111111111 0 146789999999999999999999998
Q ss_pred hhcCCCCCCchhhH--HHHHHHHHHHHHhh---ccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcC-ChhHHHH
Q 000194 1517 YCTLPVGNPVAEGR--RAIIRNMWTERIQG---TKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSG-RISQARS 1590 (1880)
Q Consensus 1517 ~~~~~~~~~~~~~~--~~~l~~~W~~Rl~~---~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g-~~~~a~~ 1590 (1880)
+++.... ... ...+.+.|..++.+ +...+..|..+...+..+..+.+..+.|++|++.|++.+ +..+...
T Consensus 1251 ~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1326 (2105)
T COG5032 1251 YKSNEDF----GALMLLSLSAELWDKILEGRSSCSKSIKLSLNIWLDLSIVVSPKDEPELFIKFVELCEASSIRSKLLEK 1326 (2105)
T ss_pred hhcccch----HHHHHHHHHHhccchhhcchhhhhHHHHHHHHHHHHHhhhcCHhhhhhHHHHHHHHHhhhhHHHHhcch
Confidence 4443211 222 34566799999999 999999999999999999988776789999999999999 7777777
Q ss_pred HHHHHhcCCC-CCCcccc-cCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccc----ccccccc--
Q 000194 1591 TLVKLLQYDP-ETSHENV-RYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSA----ASTSLTT-- 1662 (1880)
Q Consensus 1591 ~L~~l~~~~~-~~~~~~~-~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~----~~~~~~~-- 1662 (1880)
.+..+.+-.. ...+.+. ....+|.+.+...+..|.... +..+......+...+....+.++. ...+...
T Consensus 1327 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1403 (2105)
T COG5032 1327 NIQELLEKLEEIKSPLGTLRDRLPPPWALLDLKRLLATWR---QNAFLRINPELLPLLSSLLNLQSSSLSKQLVSRGSSE 1403 (2105)
T ss_pred hHHHHHhccccccchhhhhhhcCCCCchhhhhhhhhhHHH---Hhhhhhhchhhccccchhhhccchhccccccccchhh
Confidence 7766654321 1111111 122346777888888887763 222333333322111110000000 0000000
Q ss_pred ---ccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHH-HHHHHHHHHHhhhccCC----
Q 000194 1663 ---ATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHS-WALFNTAVMSHYTLRGL---- 1734 (1880)
Q Consensus 1663 ---~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~-wA~~n~~~~~~~~~~~~---- 1734 (1880)
......+...++....+.|......+....+...+...|..+..+...|+++|+. |+..|.+.+.+......
T Consensus 1404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1483 (2105)
T COG5032 1404 SAISINSFASVARKHFLPDNQLKKIYQLSNILISEAFLLLRYLLLCRLGRRELKAGLNVWNLTNLELFSDIQESEFFEWG 1483 (2105)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence 0001123344555555778776654444566777888899999999899999999 99998887765322110
Q ss_pred CCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhh-HHHHHHHHHHhcc
Q 000194 1735 PSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINT-WLVVLPQIIARIH 1813 (1880)
Q Consensus 1735 ~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~-wl~~ipQLiaRi~ 1813 (1880)
......+..++++..+.++..+ +.-..++.+|...+|+..|....+.++...+........ |+.++||+..+++
T Consensus 1484 ~~~~~~~~~~~~~~~~~s~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1558 (2105)
T COG5032 1484 KNLKLLSIIPPIEEIFLSNALS-----CYLQVKDLLKKLNLFELLGSLLSAKDAAGSYYKNFHIFDLEISVIPFIPQLLS 1558 (2105)
T ss_pred hhhHHhccCCchhHHHHhhhcc-----chHHHHHHHHhhHHHHHhhhhhhHHHHHHhhhhhcccccccccccchhhhhhh
Confidence 0112345567888888888774 456799999999999999997777777777777777666 9999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhCchhhHHHHHHHhcCCcHHHHHHHHHHHHHHhhccccccccccc
Q 000194 1814 SNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGVLVDQSCY 1877 (1880)
Q Consensus 1814 ~~~~~v~~~l~~lL~~i~~~hPqa~ly~L~~~~kS~~~~R~~~a~~Il~~~~~~~~~lv~~a~~ 1877 (1880)
.........++.++.++|+.|||++.|+|.++.+|....+...+..+..+.+.|.|.+|.++..
T Consensus 1559 ~l~~~~~~~~~~~l~~~~~~~~~a~~~~L~~~~~s~~~~~e~~~~~~~~~~~~~~~~~v~~~~~ 1622 (2105)
T COG5032 1559 SLSLLDLNSAQSLLSKIGKEHPQALVFTLRSAIESTALSKESVALSLENKSRTHDPSLVKEALE 1622 (2105)
T ss_pred hcchhHHHHHHHHHHhhhhhchhhhhhhhhHHHHHhhhhhHhHHHHHhhhhhcCChhhHhHHHh
Confidence 9888888999999999999999999999999999999999999999999999999999998854
|
|
| >KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=430.99 Aligned_cols=562 Identities=19% Similarity=0.292 Sum_probs=430.8
Q ss_pred CHHHHHHHHHHhhChhhHHHhHhHHHHHHHHhhcHHHHHHHHHHHHHHhCCC------CCChHHHHHHHHHHHHhhhCCC
Q 000194 1209 SPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSP------NIPPEILATLLNLAEFMEHDEK 1282 (1880)
Q Consensus 1209 s~~ir~c~~la~~~~~la~~Lf~~aF~s~w~~l~~~~~~~l~~~l~~~l~~~------~~p~~i~q~ll~l~efm~~~~~ 1282 (1880)
+..+-+..+++..++..|..+|...|...|..++++++..+++.+...+++. +.-|.++.+++ |-+..+.+
T Consensus 2336 ~~~l~~l~~i~~~~~~~a~~~w~~~Fp~~w~~l~~de~~~~~~~~i~flS~~~h~~q~~~~pnvln~~v---~s~~~~~~ 2412 (3550)
T KOG0889|consen 2336 ADFLDPLLQIQHHDDKVAEKLWVGLFPIVWSSLSKDEIRNLAGSIIPFLSSGYHIKQQGCRPNVLNALV---ESLVKIVP 2412 (3550)
T ss_pred HhhHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcCHhhhhcccchhccccccchhhhhhccchhHHHHHH---HHHHhhcc
Confidence 4567777888888999999999999999999999999999999999999885 23356666654 55667888
Q ss_pred CCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHH
Q 000194 1283 PLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKES 1362 (1880)
Q Consensus 1283 ~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~ 1362 (1880)
++++|+.++...+...|+|++++.++|.+..+. +.+......++.++|.+||..|++.|..+|+|+..... ..+..+.
T Consensus 2413 ~~~lpp~Li~yl~kt~~~wh~~I~lLE~~~~~~-~~~~~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~~-~eT~~a~ 2490 (3550)
T KOG0889|consen 2413 PIELPPHLIKYLGKTYNLWHTSIRLLEDHQSNK-EMENTKGDESCLDSLAELYRSLNEEDMFYGLWRRRAKF-PETMVAL 2490 (3550)
T ss_pred CCCCCHHHHHHHhccchHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhcc-HHHHHHH
Confidence 899999999999999999999999999876543 11111234678899999999999999999999976654 4567788
Q ss_pred HHHHhcCHHHHHHHHHHHHhcc---CCCchhHH---hHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHH
Q 000194 1363 WYEKLQRWDDALKAYTNKASQA---SNPHIVLE---ATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANA 1436 (1880)
Q Consensus 1363 ~~e~lg~W~~Al~~y~~~~~~~---~~~~~~~~---~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~a 1436 (1880)
.||++|.|++|+..|++.+... .-|.+..| |...|++|...|.||+.+.++++..-. ..+..++
T Consensus 2491 s~eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~~~Ey~lWed~WI~Ca~eL~QWdvl~e~~k~~~~----------~~llle~ 2560 (3550)
T KOG0889|consen 2491 SYEQLGFWEEAQSLYEKAQVKAREGAIPYSESEYKLWEDHWIRCASELQQWDVLTEFGKHEGN----------YELLLEC 2560 (3550)
T ss_pred HHHHhhhHHHHhhHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----------ceeeeeh
Confidence 8999999999999999987532 11211122 568999999999999999999965321 1266799
Q ss_pred HHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcC----------hhh-------------
Q 000194 1437 AWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK----------VLE------------- 1493 (1880)
Q Consensus 1437 aw~l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~----------~~e------------- 1493 (1880)
+||+.||+.+++........... .......+|+++.++++.. +.|
T Consensus 2561 aWrlsdw~~~~~~l~~~~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e~~~l~i~~w~~lP 2628 (3550)
T KOG0889|consen 2561 AWRLSDWNDQKDALEQKAKSLSD------------VPGFRKELYDAFLALQKKNSNGVGEFERLIGEAIQLAIREWRQLP 2628 (3550)
T ss_pred hccCCcchhHHHHHHHhhhccCC------------CCcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999877754332111 0133456777777665521 122
Q ss_pred --hHHHHHHHHHHhHhhhhHHHHHHhh-cCCCCC----CchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcC--
Q 000194 1494 --SYERAYSNMVRVQQLSELEEVIDYC-TLPVGN----PVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLP-- 1564 (1880)
Q Consensus 1494 --sy~ray~~l~~lq~L~ELeE~i~~~-~~~~~~----~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~-- 1564 (1880)
++...++.+..+|++.|++|..++. ....++ ...-...+.+.++|++|+++.++|++.|.++++||+.+++
T Consensus 2629 ~~v~~~h~~lL~~~QqivEl~Ea~~I~s~l~~~n~~n~~~~~~d~Ksil~~Wr~RlP~~~Dd~~~Wsdl~~WRq~~y~~I 2708 (3550)
T KOG0889|consen 2629 ERVNHGHVPLLQAFQQIVELQEAAQIYSDLNDGNVQNLDNKAQDIKSILQTWRDRLPNVWDDMNQWSDLITWRQHAYSMI 2708 (3550)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 2233478999999999999998855 333332 1112446778999999999999999999999999998864
Q ss_pred -----C------------------cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHH
Q 000194 1565 -----P------------------TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLK 1621 (1880)
Q Consensus 1565 -----~------------------~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak 1621 (1880)
+ ++.++.-++||+.|||+|-.+.|.+.|.++.+... -.+..++.|
T Consensus 2709 ~~~~~~~~~~~~~~~ns~~~~~Gyhe~A~~in~fakvArkh~l~~vcl~~L~~iytlp~------------veiqdaF~K 2776 (3550)
T KOG0889|consen 2709 NKAYLPLVPYKQNASNSNNLYRGYHELAWAINRFAKVARKHGLPDVCLNQLAKIYTLPN------------VEIQDAFQK 2776 (3550)
T ss_pred HHHhcccchhhhccCCcchHHHhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccCc------------chHHHHHHH
Confidence 2 12366778999999999999999999999876521 244555555
Q ss_pred HHHhcCCcchHHHHHHHHHHH---HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHH
Q 000194 1622 YQWSLGEDLKRKEAFARLQTL---AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEII 1698 (1880)
Q Consensus 1622 ~lw~~g~~~~~~~Al~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~ 1698 (1880)
+- +++..+++.- ...++...+ ++. ..-..+..|..+.+.|.++.+++. .++..
T Consensus 2777 ~r---------eq~~c~l~~~~e~~~gLevi~s----TNl-----~yF~~~q~aeff~lkG~f~~kL~~------~eeAn 2832 (3550)
T KOG0889|consen 2777 LR---------EQAKCYLQNKNELKTGLEVIES----TNL-----MYFSDRQKAEFFTLKGMFLEKLGK------FEEAN 2832 (3550)
T ss_pred HH---------HHHHHHhcChHHHHHHHHHHhc----ccH-----HHHhhHHHHHHHHhhhHHHHHhcC------cchhH
Confidence 53 2333333321 111111000 000 112356789999999999999853 47889
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHh
Q 000194 1699 AAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFN 1778 (1880)
Q Consensus 1699 ~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~ 1778 (1880)
+.|..|++++....|+|..||.|++..++... ....++.+||.||++++.+.+ .+.++..+.|+|+|.=-
T Consensus 2833 ~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~------~ni~~a~~avsCyLqA~~~~~----~skaRk~iakvLwLls~ 2902 (3550)
T KOG0889|consen 2833 KAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEP------VNISFACNAVSCYLQAARLYN----SSKARKLIAKVLWLLSF 2902 (3550)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC------cccHHHHHHHHHHHHHhcccc----chhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999986431 124799999999999999864 35578888999888866
Q ss_pred cCCcHHHHHHHHhcccCCChhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCchhhHHHHHHHh
Q 000194 1779 HGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVAC 1846 (1880)
Q Consensus 1779 ~g~~~~v~~~~~~~~~~ip~~~wl~~ipQLiaRi~~~~~~v~~~l~~lL~~i~~~hPqa~ly~L~~~~ 1846 (1880)
+.+...+.+++.+.+..||+|.|+.|||||+.-+.+.+ ...+..+|.+|++.||||+.||+..+.
T Consensus 2903 dda~~~l~~~~~k~l~~ip~~~wl~~IPQLl~sLs~~e---~~~~~~iL~kia~~yPQal~f~lRta~ 2967 (3550)
T KOG0889|consen 2903 DDSLGTLGDVFDKFLGEIPVWNWLYFIPQLLTSLSKKE---AKLVRLILIKIAKSYPQALYFPLRTAR 2967 (3550)
T ss_pred ccccchHHHHHHHhhccCCchhhhhhhHHHHhhccccc---hhHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 66666889999999999999999999999999999988 467889999999999999999998764
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=423.36 Aligned_cols=679 Identities=17% Similarity=0.170 Sum_probs=499.7
Q ss_pred HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChh--hhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcc
Q 000194 43 ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAA--ENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120 (1880)
Q Consensus 43 aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~--~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~ 120 (1880)
|...|..+. ++.+..+..++.++.++.+...+.+++++.+ .|..|+-.|-++.+. .+.+.++..+|+..+++
T Consensus 223 a~~~l~~l~--El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~----Ap~~~k~~~~~~~~lv~ 296 (1075)
T KOG2171|consen 223 AKSALEALI--ELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY----APAMCKKLALLGHTLVP 296 (1075)
T ss_pred HHHHHHHHH--HHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh----hHHHhhhchhhhccHHH
Confidence 333344444 5568888889999999999888888876654 444444444444433 55666666776666665
Q ss_pred c--------CCC--------------hHHHHHHHHHHHHHhhh-CCCCchhHHHHHHHHHHhhhc---CCCcchhHHHHH
Q 000194 121 V--------KRD--------------REILVLASKVLGHLARA-GGAMTADEVEFQVKMALDWLR---GDRVEYRRFAAV 174 (1880)
Q Consensus 121 ~--------~~d--------------~~v~~~aa~~l~~L~~~-~g~~~~~~v~~~~~~~~~~l~---~~~~~~~R~aA~ 174 (1880)
. ..| ......|.++++|++.+ ||... ++.+++|+. ...+|..|+||+
T Consensus 297 ~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v-------~p~~~~~l~~~l~S~~w~~R~AaL 369 (1075)
T KOG2171|consen 297 VLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV-------LPPLFEALEAMLQSTEWKERHAAL 369 (1075)
T ss_pred HHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe-------hHHHHHHHHHHhcCCCHHHHHHHH
Confidence 2 111 23678899999999997 43332 344445543 567889999999
Q ss_pred HHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCC-
Q 000194 175 LILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAP- 253 (1880)
Q Consensus 175 ~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~- 253 (1880)
++|+.+++||++.|.+.+++|++.++++|.||||+||.||++|++++.+.+. +..+++++..+.+.+...+.++..
T Consensus 370 ~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~---p~iqk~~~e~l~~aL~~~ld~~~~~ 446 (1075)
T KOG2171|consen 370 LALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ---PEIQKKHHERLPPALIALLDSTQNV 446 (1075)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc---HHHHHHHHHhccHHHHHHhcccCch
Confidence 9999999999999999999999999999999999999999999999987655 446677788888888888877643
Q ss_pred hhHHHHHHHHHHHHHHcchhhhHHHHHHHHH-HHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhh
Q 000194 254 VHSIHGSLLAVGELLRNTGEFMMSRYREVAE-IVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVL 332 (1880)
Q Consensus 254 ~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~-~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L 332 (1880)
+...|+|..+++...++.++.+.||++.+++ .+...++++.+.||+.++++|+++|..+.+.|.+ |++.+||+|..+|
T Consensus 447 rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~p-Y~d~~Mp~L~~~L 525 (1075)
T KOG2171|consen 447 RVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIP-YFDRLMPLLKNFL 525 (1075)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHh-HHHHHHHHHHHHH
Confidence 6678888888888888999999999999999 6667778899999999999999999999999986 8899999999999
Q ss_pred cCCC------CcchHHHHHHHHHhhchh-hhhhhhhHHHHHHHHh---hcCCCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 000194 333 RIPA------ERDSGFIALGEMAGALDG-ELFHYLPTITSHLREA---IAPRRGKPSLEALACVGNIARAMGPVMEPHVR 402 (1880)
Q Consensus 333 ~~~~------~r~~a~~alg~la~~v~~-~~~p~l~~i~~~l~~~---l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~ 402 (1880)
.+.+ .|+..++|+|.++.+||+ .|.|+..++|+.+... ..+.+...+.+.+.+|+++|+.+|++|.||++
T Consensus 526 ~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~ 605 (1075)
T KOG2171|consen 526 QNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLP 605 (1075)
T ss_pred hCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHH
Confidence 8754 268899999999999996 5778888888877665 33333333567899999999999999999999
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCch
Q 000194 403 GLLDIMFSA-GLSTTLVDALEQITV-SIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480 (1880)
Q Consensus 403 ~ll~~l~~~-~ls~~l~~~l~~i~~-~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1880)
.+||+++.+ .+.++..-. ...+. ....+. . ++.+. +.++. ...+ .+. ...
T Consensus 606 ~Vmppl~~ta~~~p~~~~~-d~~d~e~~~~~~-~-----~e~~~--~~~~e--------------~~~I--~Ts---vl~ 657 (1075)
T KOG2171|consen 606 VVMPPLLKTARLDPDVALS-DEEDEEEEQDLD-G-----WEVVE--LGDKE--------------NIGI--RTS---VLD 657 (1075)
T ss_pred HHhHHHHHhhccCCcccCc-Cchhhhhccccc-c-----chhhc--cCCce--------------eeee--eeh---hHH
Confidence 999999975 233322100 00000 000000 0 00000 00000 0000 011 112
Q ss_pred hHHHHHHhhccccc-CCCcchhhHHHHHh---h-hccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchh
Q 000194 481 PVQLALQTLARFNF-KGHDLLEFARDSVV---L-YLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRR 555 (1880)
Q Consensus 481 ~~~~Al~~L~~~~~-~~~~l~~~v~~~~~---~-~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (1880)
+++.|+++|++|.- .+..|.||+.+++. + +..+.|++||++|+.+++.++.+....+. + + .....
T Consensus 658 eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~--~---~-----p~~l~ 727 (1075)
T KOG2171|consen 658 EKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQ--G---G-----PEYLK 727 (1075)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhc--c---C-----hHHHH
Confidence 45789999999943 24567788887643 3 34467999999999998888765543220 0 0 11367
Q ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHhccCC-CCc------chhhccH--hhHHHHHH---HhC---------CCC--
Q 000194 556 RLIEELVEKLLIAAVADADVTVRHSIFSSLYGN-RGF------DDFLAQA--DCLSAIFA---ALN---------DED-- 612 (1880)
Q Consensus 556 ~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~-~~f------d~~L~~~--~~l~~L~~---~l~---------D~~-- 612 (1880)
+++..+.+.++.+...+|+++|-.+++++|+.+ ..+ +++...- .+...+.. ..+ |.+
T Consensus 728 ~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~ 807 (1075)
T KOG2171|consen 728 QLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIE 807 (1075)
T ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhH
Confidence 889999999999999999999999999998631 111 1111100 00111110 000 111
Q ss_pred ---------HhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHH
Q 000194 613 ---------FDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAP 683 (1880)
Q Consensus 613 ---------~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~ 683 (1880)
..+-..+.+++..+++...+.+.|.+..+....+..+..+ .... |+.|.++++++++.+++...+|.+.
T Consensus 808 eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~-~~~~-r~~av~~~~d~ie~~~~a~~~~~~~ 885 (1075)
T KOG2171|consen 808 EEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSK-KTVA-RQWAVCIFDDLIEGCGEASAKYKER 885 (1075)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcC-CcHH-HHHHHHHHHHHHHhcccccchHHHH
Confidence 1234567788888999999999999999888877777766 4555 9999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCc-----hhhHHHHHHHHHHHH
Q 000194 684 IHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAA-----VTKREVAVSTLGQVV 758 (1880)
Q Consensus 684 il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~-----~~~r~~Al~~Lg~l~ 758 (1880)
+++.++..+.+. +++|++++.+++|.+++.+|...++.+...+|.+...++.... ...+++|+.++++++
T Consensus 886 ~~p~~~~~~~d~-----~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~ 960 (1075)
T KOG2171|consen 886 FLPLVLEALQDS-----DPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKIL 960 (1075)
T ss_pred HHHHHHHHcCCC-----CHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHH
Confidence 999999999985 8999999999999999999999999999999999999875422 234589999999999
Q ss_pred hhcCcccccCCcchHHHHHHHHHhcCCCC
Q 000194 759 QSTGYVITPYNEYPQLLGLLLKMLNGELV 787 (1880)
Q Consensus 759 ~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~ 787 (1880)
.+....+ | ++++++.++..|-..++
T Consensus 961 ~~~~~~i-~---vdqvl~~~l~~LPl~~D 985 (1075)
T KOG2171|consen 961 LFNPNRI-P---VDQVLPAWLSWLPLKED 985 (1075)
T ss_pred HhCCccC-c---HHHHHHHHHHhCCCccc
Confidence 8876653 2 46899999998854333
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=359.54 Aligned_cols=619 Identities=17% Similarity=0.222 Sum_probs=470.9
Q ss_pred CCHHHHHHHHHHHcCCC-CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhcc
Q 000194 21 GSLDALNRILADLCTHG-NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDV 99 (1880)
Q Consensus 21 ~~~~~~~~l~~~l~s~~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~ 99 (1880)
+=|+++.++.+.|.++. +..++|..+|.+++|+.+..+..+...++++-+..++.++++++++..|.-|+.++|++|-.
T Consensus 125 ~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 125 HWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred cchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 44999999999999987 57888999999999999999999988999999999999999999999999999999999877
Q ss_pred ccCcchhHHHHHHHHHHhhccc--CCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc---CCCcchhHHHHH
Q 000194 100 ALGENASKVSKFSNYMRTVFEV--KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR---GDRVEYRRFAAV 174 (1880)
Q Consensus 100 ~~~~~~~~~~~~~~~L~~~l~~--~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~---~~~~~~~R~aA~ 174 (1880)
. +.+...+...||..+|.. +.|++|++..|.+|..|.+. .++-+.+.+..++||+- .+.+++.-..|+
T Consensus 205 ~---~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev----r~dkl~phl~~IveyML~~tqd~dE~VALEAC 277 (885)
T KOG2023|consen 205 Q---TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV----RPDKLVPHLDNIVEYMLQRTQDVDENVALEAC 277 (885)
T ss_pred C---cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh----cHHhcccchHHHHHHHHHHccCcchhHHHHHH
Confidence 4 445666777888888864 55789999999999999886 33333344566666642 566778889999
Q ss_pred HHHHHHHhh--cCccchhchHHHHHHHHHHhcCCch--------------------------------------------
Q 000194 175 LILKEMAEN--ASTVFNVHVAEFVDAIWVALRDPTL-------------------------------------------- 208 (1880)
Q Consensus 175 ~~l~~la~~--~p~~l~~~l~~i~~~i~~~l~D~~~-------------------------------------------- 208 (1880)
.+|-.+|+. +++.+.||+++++|.++.+|+-.+.
T Consensus 278 EFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDddd 357 (885)
T KOG2023|consen 278 EFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDD 357 (885)
T ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccc
Confidence 999999998 6678999999999999999863321
Q ss_pred ------------hHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhH
Q 000194 209 ------------AVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMM 276 (1880)
Q Consensus 209 ------------~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~ 276 (1880)
.+|+..+.||..+..+ .+.+.+..++|-+...|.+. .|.+++++++|+|++++++.++|.
T Consensus 358 De~DDdD~~~dWNLRkCSAAaLDVLanv-------f~~elL~~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~ 429 (885)
T KOG2023|consen 358 DEDDDDDAFSDWNLRKCSAAALDVLANV-------FGDELLPILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFV 429 (885)
T ss_pred cccccccccccccHhhccHHHHHHHHHh-------hHHHHHHHHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcc
Confidence 2455555555544433 33456778888888888875 599999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC-CC-CcchHHHHHHHHHhhchh
Q 000194 277 SRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI-PA-ERDSGFIALGEMAGALDG 354 (1880)
Q Consensus 277 ~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~-~~-~r~~a~~alg~la~~v~~ 354 (1880)
||++++++.++.+++++.+.||...|+++++.+.|.-.+=...|+.++|..++..+-+ .+ ...+|..+++.+-+..|+
T Consensus 430 p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~ 509 (885)
T KOG2023|consen 430 PHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGE 509 (885)
T ss_pred cchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999998765433446888888888776543 33 347999999999999999
Q ss_pred hhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCch--HHHHHHHHHHHhc-C-CCHH------HHHHHHHH
Q 000194 355 ELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVME--PHVRGLLDIMFSA-G-LSTT------LVDALEQI 424 (1880)
Q Consensus 355 ~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~--~~l~~ll~~l~~~-~-ls~~------l~~~l~~i 424 (1880)
++.||+..|++.+.-+++....+.-.-.+.++|.+|..+|..+. .|++-+||+|++. . ++++ +.+|+..+
T Consensus 510 eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsi 589 (885)
T KOG2023|consen 510 ELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSI 589 (885)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 99999999999999999877666666789999999999999764 3899999998852 2 2222 22333332
Q ss_pred HHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHH
Q 000194 425 TVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFAR 504 (1880)
Q Consensus 425 ~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~ 504 (1880)
+. || |..|.||..
T Consensus 590 a~----------------------------------------------------------AL---------~~gF~P~~~ 602 (885)
T KOG2023|consen 590 AS----------------------------------------------------------AL---------GVGFLPYAQ 602 (885)
T ss_pred HH----------------------------------------------------------HH---------hccccccCH
Confidence 21 21 112223322
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHh
Q 000194 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSS 584 (1880)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1880)
++...-++ -++ .|.++..+...........+... -.+..+++.+.+ .
T Consensus 603 ~Vy~Rc~~----il~-----~t~q~~~~~~~~~~~~~pdkdfi----I~sLDL~SGLae--------------------g 649 (885)
T KOG2023|consen 603 PVYQRCFR----ILQ-----KTLQLLAKVQQDPTVEAPDKDFI----IVSLDLLSGLAE--------------------G 649 (885)
T ss_pred HHHHHHHH----HHH-----HHHHHHHhccCCccccCCCcceE----EEeHHHHhHHHH--------------------H
Confidence 22111000 000 01111111100000000000000 002333443333 2
Q ss_pred ccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHH
Q 000194 585 LYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAK 664 (1880)
Q Consensus 585 l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~ 664 (1880)
|+ ....+.+++..++..++.|+.|+.++||++++.++|.+++.++..|.|.+..++.-+...+.. .....-.+|+|
T Consensus 650 Lg--~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~--~~isv~nNA~W 725 (885)
T KOG2023|consen 650 LG--SHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNP--ENISVCNNAIW 725 (885)
T ss_pred hh--hchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCCh--hhchHHHHHHH
Confidence 32 234566677788999999999999999999999999999999999999998877655544322 23345678999
Q ss_pred HHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCch
Q 000194 665 LLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAV 744 (1880)
Q Consensus 665 ~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~ 744 (1880)
++|.++...+...+||+.+++..|+..++... ....+.++...|||.|+...++.++|+++.++..++..++.-.+.
T Consensus 726 AiGeia~k~g~~~~~~v~~vl~~L~~iin~~~---~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~Dn 802 (885)
T KOG2023|consen 726 AIGEIALKMGLKMKQYVSPVLEDLITIINRQN---TPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDN 802 (885)
T ss_pred HHHHHHHHhchhhhhHHHHHHHHHHHHhcccC---chHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999988653 467888999999999999999999999999999999999877778
Q ss_pred hhHHHHHHHHHHHHhhc
Q 000194 745 TKREVAVSTLGQVVQST 761 (1880)
Q Consensus 745 ~~r~~Al~~Lg~l~~~~ 761 (1880)
+.++.|..+++.++.-.
T Consensus 803 eEK~sAFrG~c~mi~vN 819 (885)
T KOG2023|consen 803 EEKESAFRGLCNMINVN 819 (885)
T ss_pred hhHHHHHHHHHHheeeC
Confidence 89999999999987654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=376.08 Aligned_cols=311 Identities=36% Similarity=0.626 Sum_probs=251.3
Q ss_pred HHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcC-------------------
Q 000194 1430 APMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK------------------- 1490 (1880)
Q Consensus 1430 ~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~------------------- 1490 (1880)
||++++|||++|+||.+.++++..+.+ +.+..||+++.++++++
T Consensus 1 ~~~~~eaaWrl~~Wd~l~~~~~~~~~~-----------------~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l 63 (352)
T PF02259_consen 1 APLAAEAAWRLGDWDLLEEYLSQSNED-----------------SPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDEL 63 (352)
T ss_pred ChHHHHHHHhcCChhhHHHHHhhccCC-----------------ChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999877642 33467888888877653
Q ss_pred ---hhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcC---
Q 000194 1491 ---VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLP--- 1564 (1880)
Q Consensus 1491 ---~~esy~ray~~l~~lq~L~ELeE~i~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~--- 1564 (1880)
..+||.|+|+.|+++|+|+||||++++......+ ....+.+.+.|++|++++++++++|++||++|+++++
T Consensus 64 ~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~~---~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~ 140 (352)
T PF02259_consen 64 SALSSESYQRAYPSLVKLQQLVELEEIIELKSNLSQN---PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLIL 140 (352)
T ss_pred HHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhccc---HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccc
Confidence 4689999999999999999999999998432211 4567789999999999999999999999999999999
Q ss_pred -CcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 000194 1565 -PTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643 (1880)
Q Consensus 1565 -~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~ 1643 (1880)
+.+..++|++|+++|||+|++++|.++|.++.++++..+. ..|.+.+|+||++|++|+ +.+|+..|+.++
T Consensus 141 ~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~------~~~~v~~e~akllw~~g~---~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 141 LPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES------LLPRVFLEYAKLLWAQGE---QEEAIQKLRELL 211 (352)
T ss_pred chhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC------CCcchHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 8899999999999999999999999999999876543211 268999999999999995 689999999988
Q ss_pred H-HhcCCCccc---ccc--------ccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc
Q 000194 1644 M-ELSSCPVIQ---SAA--------STSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711 (1880)
Q Consensus 1644 ~-~~~~~~~~~---~~~--------~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~ 1711 (1880)
. .+....... ... .........+..++.|++++++|+|..+++.....+..+++.+.|+.|++++|+|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 291 (352)
T PF02259_consen 212 KCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW 291 (352)
T ss_pred HHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence 7 333221000 000 0000011245578899999999999998721134578899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCC---CchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHH
Q 000194 1712 GKAWHSWALFNTAVMSHYTLRGLP---SVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLT 1774 (1880)
Q Consensus 1712 ~k~w~~wA~~n~~~~~~~~~~~~~---~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLt 1774 (1880)
+|+||+||.+|+++++........ +...+|+..||+||++|+.+| +++.++++|||||
T Consensus 292 ~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~-----~~~~~~~~~RlLt 352 (352)
T PF02259_consen 292 EKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLG-----SKYVRQDLPRLLT 352 (352)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhC-----CCchHHHhhHhcC
Confidence 999999999999999876432110 246789999999999999986 6789999999996
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-29 Score=314.38 Aligned_cols=904 Identities=16% Similarity=0.189 Sum_probs=602.7
Q ss_pred HHHHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhh-cCCChhhhhhHHHHHhHhhccc
Q 000194 23 LDALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLL-ESNDAAENLGALRAIDELIDVA 100 (1880)
Q Consensus 23 ~~~~~~l~~~l~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~-~s~~~~~r~~~i~ai~~Li~~~ 100 (1880)
..-+.+|++.|.|+.+++++ |-+.|...- +. +. +...+..+. +++++..|.-|...+..|+...
T Consensus 3 ~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~----~~--~~--------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~ 68 (1075)
T KOG2171|consen 3 SAPLEQLLQQLLSPDNEVRRQAEEALETLA----KT--EP--------LLPALAHILATSADPQVRQLAAVLLRKLLTKH 68 (1075)
T ss_pred hhHHHHHHHHhcCCCchHHHHHHHHHHHhh----cc--cc--------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 34588999999999887776 544333222 11 11 222333333 4566666655555555554432
Q ss_pred cCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCC-CchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHH
Q 000194 101 LGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGA-MTADEVEFQVKMALDWLRGDRVEYRRFAAVLILK 178 (1880)
Q Consensus 101 ~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~-~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~ 178 (1880)
... +.....+.-.-|..++..-....|++.-|.++..+++.-.. .|++++++++.-+ .+.+...|..|+.+|.
T Consensus 69 w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~-----~S~~~~~rE~al~il~ 143 (1075)
T KOG2171|consen 69 WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQST-----KSPNPSLRESALLILS 143 (1075)
T ss_pred hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHh-----cCCCcchhHHHHHHHH
Confidence 111 22233344444444444456789999999999999986222 6888877766544 3566789999999999
Q ss_pred HHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHH----hhccCCCCh
Q 000194 179 EMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQ----DGLGRNAPV 254 (1880)
Q Consensus 179 ~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~----~~l~~~~~~ 254 (1880)
.+.+.-+..+.+|+..+.+.+.++|.||+..||-+|..|++.+...+. .+. ...+.+..++|.++ ..+... +.
T Consensus 144 s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~-~~~-~~~~~~~~llP~~l~vl~~~i~~~-d~ 220 (1075)
T KOG2171|consen 144 SLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLE-NNK-SEVDKFRDLLPSLLNVLQEVIQDG-DD 220 (1075)
T ss_pred hhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhc-cch-HHHHHHHHHhHHHHHHhHhhhhcc-ch
Confidence 999999999999999999999999999998899999999999988764 111 12223444455444 434443 34
Q ss_pred hHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhc--chhHHHHHHHHHhHhHhhhChhhHH--HHHHHHHHHHHHH
Q 000194 255 HSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEH--RDRLVRLSITSLLPRIAHFLRDRFV--TNYLKICMNHILT 330 (1880)
Q Consensus 255 ~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~--~~~~Vr~~~~~~i~~la~~~~~~f~--~~yl~~~~~~Ll~ 330 (1880)
+....++.+|.++++..+.++.+++.++++..+....+ -+..+|..++..|-.+++++|..-- ..|.+++++.++.
T Consensus 221 ~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~ 300 (1075)
T KOG2171|consen 221 DAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLA 300 (1075)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHH
Confidence 66788888999999999999999999999988887765 4788999999999999999775421 2477888888887
Q ss_pred hhcCCC------------------CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHH
Q 000194 331 VLRIPA------------------ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1880)
Q Consensus 331 ~L~~~~------------------~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~ 392 (1880)
.+.... ....|.++|..+|..+|.. ..+|.+++.+...++..+-+.+.+++.+++.+++.
T Consensus 301 ~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~--~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EG 378 (1075)
T KOG2171|consen 301 MMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK--QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEG 378 (1075)
T ss_pred hcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh--hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 764211 0236777777777777652 34566777777777554434445667777766665
Q ss_pred hCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCcc
Q 000194 393 MGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQ 472 (1880)
Q Consensus 393 ~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1880)
.++.+.+.++.
T Consensus 379 c~~~m~~~l~~--------------------------------------------------------------------- 389 (1075)
T KOG2171|consen 379 CSDVMIGNLPK--------------------------------------------------------------------- 389 (1075)
T ss_pred cHHHHHHHHHH---------------------------------------------------------------------
Confidence 43322222222
Q ss_pred ccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCcccccccc
Q 000194 473 VSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGG 552 (1880)
Q Consensus 473 ~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 552 (1880)
+-+.+++++.|+|+.||.||..+++++-.... +
T Consensus 390 ------------------------------Il~~Vl~~l~DphprVr~AA~naigQ~stdl~-----------------p 422 (1075)
T KOG2171|consen 390 ------------------------------ILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ-----------------P 422 (1075)
T ss_pred ------------------------------HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc-----------------H
Confidence 23345577888899999998888887643111 0
Q ss_pred chhHHHHHHHHHHHHHHhcCCC-hhHHHHHHHhcc----C--CCCcchhhccHhhHH-HHHHHhCCCCHhHHHHHHHHHH
Q 000194 553 KRRRLIEELVEKLLIAAVADAD-VTVRHSIFSSLY----G--NRGFDDFLAQADCLS-AIFAALNDEDFDVREYAISVAG 624 (1880)
Q Consensus 553 ~~~~~~~~vl~~Ll~~~~~d~~-~~vR~~~l~~l~----~--~~~fd~~L~~~~~l~-~L~~~l~D~~~~VR~~a~~~l~ 624 (1880)
...+...+.+..++.....++. ++|...+..++- + ...+.+|| +.++. .+..+++...+.||+.++..||
T Consensus 423 ~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL--d~lm~~~l~~L~~~~~~~v~e~vvtaIa 500 (1075)
T KOG2171|consen 423 EIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL--DGLMEKKLLLLLQSSKPYVQEQAVTAIA 500 (1075)
T ss_pred HHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 1222334444433333334443 455554444431 1 12345666 35566 4555666778899999999999
Q ss_pred hhhcCCcccccHHHHHHHHHHHHHHhcCCCCh---HhHHHHHHHHHHHHHhCc-ccccCchHHHHHHHHHHhccCCCCCC
Q 000194 625 RLSEKNPAYVLPALRRHLIQLLTYLEQSSADN---KCREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINA 700 (1880)
Q Consensus 625 ~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~---~~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~ 700 (1880)
..+......+.||+..+|..+...+++. ++. ..|....++++.++.+.+ +.+.|+...+++.++....+. .+.
T Consensus 501 svA~AA~~~F~pY~d~~Mp~L~~~L~n~-~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~--~~~ 577 (1075)
T KOG2171|consen 501 SVADAAQEKFIPYFDRLMPLLKNFLQNA-DDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSD--QDD 577 (1075)
T ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHhCC-CchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccc--hhh
Confidence 9999888889999998887777777765 322 345567788888888876 789999999999998875222 122
Q ss_pred ChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhc--------CC---------------------------chh
Q 000194 701 NNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD--------GA---------------------------AVT 745 (1880)
Q Consensus 701 ~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d--------~~---------------------------~~~ 745 (1880)
+...++..+...+.+++..|++|.||++.+||.+++..+- +. -.+
T Consensus 578 dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~ 657 (1075)
T KOG2171|consen 578 DDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLD 657 (1075)
T ss_pred ccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHH
Confidence 4556677788899999999999999999999999997631 10 013
Q ss_pred hHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCccccccc
Q 000194 746 KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRA 825 (1880)
Q Consensus 746 ~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~ 825 (1880)
.++.|...|+.++..++..+.||.. ++++..+..++-..+..||.+++.+++.+-.- . ++...+.|
T Consensus 658 eK~~A~~~Lv~~a~~lk~~F~pYve--~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~--~-~~A~~~~p--------- 723 (1075)
T KOG2171|consen 658 EKETACEALGEYAKELKEAFAPYVE--QVVELMVPLLKFYFHDGVRKAAAESMPQLLTC--A-LKACQGGP--------- 723 (1075)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHH--HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--H-HHHhccCh---------
Confidence 5678999999999999999999975 67776666666667889999999998875310 0 00000000
Q ss_pred CCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCC--CCcchhhHH
Q 000194 826 ASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCV--PYLPKVLPD 903 (1880)
Q Consensus 826 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~--~~l~~iip~ 903 (1880)
. ....+ -..+.+.++..+.++...+....+.+++...++.+|+.|. +++..++-.
T Consensus 724 ---------~---~l~~l-----------~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~ 780 (1075)
T KOG2171|consen 724 ---------E---YLKQL-----------WEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGG 780 (1075)
T ss_pred ---------H---HHHHH-----------HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHH
Confidence 0 00011 1356778888887776667777889999999999998763 466665555
Q ss_pred HHHHHh----cCC-----------c-----chh---HHHH----HHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCc
Q 000194 904 LFHTVR----TCD-----------D-----YLK---DYIT----WKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPA 956 (1880)
Q Consensus 904 ll~~l~----~~~-----------~-----~~~---~~~~----~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~ 956 (1880)
+...+. ... + .+. .+++ ..+..++...+.++.|+++.+.+.+..+|......
T Consensus 781 ~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~- 859 (1075)
T KOG2171|consen 781 LLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTV- 859 (1075)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcH-
Confidence 544332 110 0 011 1223 23344444557789999999999999999866421
Q ss_pred ccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHh-cchhhhhhhhHHHHHH
Q 000194 957 TNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG-GTLDEHMHLLLPALIR 1035 (1880)
Q Consensus 957 ~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g-~~~~~~~~~ilp~l~~ 1035 (1880)
. ++ -.+.+++.+..-.++.-.+|...++|.++..+.+.+-..++..+.. +..+..+| ....+.+...+|.+..
T Consensus 860 ---~-r~-~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYG-iGvlaq~~g~~y~~v~~~~l~~L~~ 933 (1075)
T KOG2171|consen 860 ---A-RQ-WAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYG-MGVLAQFGGEDYAPVCSEALPLLVQ 933 (1075)
T ss_pred ---H-HH-HHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHHHHcCcchHHHHHHHHHHHHH
Confidence 1 22 5677888888888899999999999999999987542222222222 22233333 3334445556777777
Q ss_pred hhcCC-----CcHHHHHHHHHHHHhhcccc-cccchhHhHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHHhcccccc---
Q 000194 1036 LFKVD-----APVDIRRAAIETLTRLIPRV-QVTGHISSLVHHLKLVLDGK-NDELRKDAVDALCCLAHALGEDFTI--- 1105 (1880)
Q Consensus 1036 ~l~~~-----~~~~vr~~ai~~l~~l~~~~-~~~~~~~~ii~~l~~~l~~~-~~~l~~~al~~L~~l~~~~g~~f~~--- 1105 (1880)
.+... ........|+.++++++... +-.+ ++..++.++..|... +.+--....+.||.|..+-......
T Consensus 934 ~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~-vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n 1012 (1075)
T KOG2171|consen 934 VLQPPLARTEENRRATENAIGAIAKILLFNPNRIP-VDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIVLGPNN 1012 (1075)
T ss_pred HHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCc-HHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCCeeeCCCc
Confidence 77543 34456778888888887763 3344 778888887777643 4567788899999998875544433
Q ss_pred -chhHHHHHHHh
Q 000194 1106 -FIPSIHKLLLK 1116 (1880)
Q Consensus 1106 -fip~i~~~l~~ 1116 (1880)
.+|.|..++..
T Consensus 1013 ~~ip~i~~v~~~ 1024 (1075)
T KOG2171|consen 1013 QNIPKILSVCAE 1024 (1075)
T ss_pred ccchHHHHHHHh
Confidence 55666655544
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-29 Score=298.17 Aligned_cols=751 Identities=17% Similarity=0.223 Sum_probs=498.8
Q ss_pred HHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHH-----------HHHhhcc
Q 000194 52 EEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSN-----------YMRTVFE 120 (1880)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~-----------~L~~~l~ 120 (1880)
+..+.++..++|.+|+..+..-+.+ -++++..+..+|+...|.|...+.........||.. ++.+.+.
T Consensus 22 e~~l~~~~~~nf~~F~~~Ls~vl~n-~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~ 100 (859)
T KOG1241|consen 22 EKQLEQAQSQNFPQFLVLLSEVLAN-DNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLG 100 (859)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc-cCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Confidence 3456677788899998777652222 234566677889999999998875445666777763 5555553
Q ss_pred cCCChHHHHHHHHHHHHHhhh--CCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh-cCccchhchHHHHH
Q 000194 121 VKRDREILVLASKVLGHLARA--GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN-ASTVFNVHVAEFVD 197 (1880)
Q Consensus 121 ~~~d~~v~~~aa~~l~~L~~~--~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~-~p~~l~~~l~~i~~ 197 (1880)
+.++.....|+++++.+|.. +.+.|+++++..+.++-+ +.....|.+++.+++++++. .|..+..+.+.++.
T Consensus 101 -~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~----~~~~~~k~~slealGyice~i~pevl~~~sN~iLt 175 (859)
T KOG1241|consen 101 -SPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGE----EQASMVKESSLEALGYICEDIDPEVLEQQSNDILT 175 (859)
T ss_pred -CCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhccc----ccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHH
Confidence 56788999999999999874 778899998887777643 34447899999999999998 77899999999999
Q ss_pred HHHHHhc--CCchhHHHHHHHHHHHHHHHHhh-hch-hhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh
Q 000194 198 AIWVALR--DPTLAVRERAVEALRACLRVIEK-RET-RWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE 273 (1880)
Q Consensus 198 ~i~~~l~--D~~~~VR~aA~~al~~~~~~i~~-r~~-~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~ 273 (1880)
.|..+++ .|+..||-||..||-.++++... .+. ..++.+++.+++.+ .++ +.+++++|+.+|..+....-+
T Consensus 176 aIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEat----q~~-d~~i~~aa~~ClvkIm~LyY~ 250 (859)
T KOG1241|consen 176 AIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEAT----QSP-DEEIQVAAFQCLVKIMSLYYE 250 (859)
T ss_pred HHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecc----cCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 9999997 78899999999999999998873 221 13444445544443 334 578999988888887776678
Q ss_pred hhHHHHHH-HHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhc
Q 000194 274 FMMSRYRE-VAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGAL 352 (1880)
Q Consensus 274 ~~~~~~~~-i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la~~v 352 (1880)
||.+|+.+ ++..-+....+.++.|...+++-+..+++- ++ +-.+. +....+++..-..-. ++
T Consensus 251 ~m~~yM~~alfaitl~amks~~deValQaiEFWsticeE---Ei-----D~~~e-~~e~~d~~~~p~~~~-----fa--- 313 (859)
T KOG1241|consen 251 FMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEE---EI-----DLAIE-YGEAVDQGLPPSSKY-----FA--- 313 (859)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH---HH-----HHHHH-HHHHhhcCCCchhhH-----HH---
Confidence 99999998 666666666788899998888888777642 11 00000 000001100000000 00
Q ss_pred hhhhhhhhhHHHHHHHHhhcCCCCC-------CCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000194 353 DGELFHYLPTITSHLREAIAPRRGK-------PSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQIT 425 (1880)
Q Consensus 353 ~~~~~p~l~~i~~~l~~~l~~~~~~-------~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~ 425 (1880)
..-++.+++.+.+.|.....+ +..++-.|+..+++.+|.++.|++ +
T Consensus 314 ----~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~V---l-------------------- 366 (859)
T KOG1241|consen 314 ----RQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHV---L-------------------- 366 (859)
T ss_pred ----HHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhh---H--------------------
Confidence 011234444555555321111 112455666666666665544422 2
Q ss_pred HhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHH
Q 000194 426 VSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARD 505 (1880)
Q Consensus 426 ~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~ 505 (1880)
||++
T Consensus 367 ---------------------------------------------------------------------------~Fie- 370 (859)
T KOG1241|consen 367 ---------------------------------------------------------------------------PFIE- 370 (859)
T ss_pred ---------------------------------------------------------------------------HHHH-
Confidence 2222
Q ss_pred HHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000194 506 SVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSL 585 (1880)
Q Consensus 506 ~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1880)
..+.++++.-|.+|+.+.+.++.- |++.-+.
T Consensus 371 ---e~i~~pdwr~reaavmAFGSIl~g----------------------------------------p~~~~Lt------ 401 (859)
T KOG1241|consen 371 ---ENIQNPDWRNREAAVMAFGSILEG----------------------------------------PEPDKLT------ 401 (859)
T ss_pred ---HhcCCcchhhhhHHHHHHHhhhcC----------------------------------------Cchhhhh------
Confidence 124455666777777766554420 0000000
Q ss_pred cCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHH--HHHHHHHHHHHHhcCCCChHhHHHHH
Q 000194 586 YGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA--LRRHLIQLLTYLEQSSADNKCREESA 663 (1880)
Q Consensus 586 ~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~--l~~~l~~~l~~l~~~~~~~~~r~~a~ 663 (1880)
+.. +..++.+...+.|++.-||.++.+.+|++++++|..+.+. +...+.-++..+.+ .++...++|
T Consensus 402 -------~iV--~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D---ePrva~N~C 469 (859)
T KOG1241|consen 402 -------PIV--IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND---EPRVASNVC 469 (859)
T ss_pred -------HHH--hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh---CchHHHHHH
Confidence 000 1236667777889999999999999999999999765542 23333444555544 478888999
Q ss_pred HHHHHHHHhCcc---------cccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHH
Q 000194 664 KLLGCLIRNCER---------LIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLI 734 (1880)
Q Consensus 664 ~~L~~l~~~~~~---------~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l 734 (1880)
|.+..|++++.+ ...||++.|+..|+..-...+ ...++++.++..+|+++.........|-+..+.+.+
T Consensus 470 WAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~d--gnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~i 547 (859)
T KOG1241|consen 470 WAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRAD--GNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVI 547 (859)
T ss_pred HHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccc--cchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 999999965322 344788999999988765432 136788999999999999998887777766666666
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccc
Q 000194 735 VEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ 814 (1880)
Q Consensus 735 ~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~ 814 (1880)
...|... +. +++...... ..+.+|-..|.+.| +.+-. | +
T Consensus 548 l~kl~q~---------i~--~~~l~~~dr-----~q~~eLQs~Lc~~L----------------q~i~r------k-~-- 586 (859)
T KOG1241|consen 548 LEKLDQT---------IS--SQILSLADR-----AQLNELQSLLCNTL----------------QSIIR------K-V-- 586 (859)
T ss_pred HHHHHHH---------HH--HHhccHhhH-----HHHHHHHHHHHHHH----------------HHHHH------H-c--
Confidence 6655321 11 111000000 00111222222221 11100 0 0
Q ss_pred cCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCC
Q 000194 815 LSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCV 894 (1880)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~ 894 (1880)
.. + -.-+.+.+|+.+++++..+.-...|..++-|+..+..++|..|.
T Consensus 587 -~~----------~----------------------~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~ 633 (859)
T KOG1241|consen 587 -GS----------D----------------------IREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFA 633 (859)
T ss_pred -cc----------c----------------------chhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHH
Confidence 00 0 00134788999999998754456789999999999999999999
Q ss_pred CCcchhhHHHHHHHhcCCcc-hhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHH
Q 000194 895 PYLPKVLPDLFHTVRTCDDY-LKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQL 973 (1880)
Q Consensus 895 ~~l~~iip~ll~~l~~~~~~-~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l 973 (1880)
.|++.+.|-+...++++++. +-..+....|.+.+.++..|.||.+++|..+.+.++.+.++.. .+..++++++.|
T Consensus 634 kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~----vKP~IlS~FgDI 709 (859)
T KOG1241|consen 634 KYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRN----VKPAILSVFGDI 709 (859)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCcccccc----ccchHHHHHHHH
Confidence 99999999999999887665 3345567789999999999999999999999999987765432 345899999999
Q ss_pred HHHhhhhhhccchhhHHHHHHhccc-ccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHH
Q 000194 974 CLALNDEFRTHLPVILPCCIQVLSD-AERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIET 1052 (1880)
Q Consensus 974 ~~~l~~~f~~yl~~l~p~ll~~l~~-~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~ 1052 (1880)
+.++|.+|.+|+..++|.+...-+- .|.. + ....+|+ .++|+.++++
T Consensus 710 AlaIg~~F~~Yl~~vm~llq~as~~~~d~~-~---------------~~~~dYv----------------d~LRe~~lea 757 (859)
T KOG1241|consen 710 ALAIGADFEPYLEMVMPLLQQASSVQTDPA-D---------------DSMVDYV----------------DELREGILEA 757 (859)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhccCCCC-c---------------ccHHHHH----------------HHHHHHHHHH
Confidence 9999999999999999998765421 1110 0 0112222 3455555555
Q ss_pred HHhhccc-------ccccchhHhHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHhccccccc
Q 000194 1053 LTRLIPR-------VQVTGHISSLVHHLKLVLDGKN--DELRKDAVDALCCLAHALGEDFTIF 1106 (1880)
Q Consensus 1053 l~~l~~~-------~~~~~~~~~ii~~l~~~l~~~~--~~l~~~al~~L~~l~~~~g~~f~~f 1106 (1880)
...+..+ .-+.||++.|++.+-++-..++ ..+..+++..++.|+..+|++...|
T Consensus 758 y~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~ 820 (859)
T KOG1241|consen 758 YTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKL 820 (859)
T ss_pred HHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhh
Confidence 5444332 2356899999998888876554 4688999999999999999775433
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-24 Score=241.52 Aligned_cols=691 Identities=16% Similarity=0.162 Sum_probs=437.2
Q ss_pred HHHHhhhChHHHHHHHHHHHHHHHhhh--cCCChhhhhhHHHHHhHhhccccCcchhHHHHHHH-------HHH----hh
Q 000194 52 EEQARDLGGEAFSRFMDQLYDRISGLL--ESNDAAENLGALRAIDELIDVALGENASKVSKFSN-------YMR----TV 118 (1880)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~l~~~i~~l~--~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~-------~L~----~~ 118 (1880)
+.++.+++...|.+|+.-+.+ .++ ++.+.-+-.+|+...++|+.-++....+...||.. +++ +.
T Consensus 26 E~ql~~l~~~dF~qf~~ll~q---vl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~a 102 (858)
T COG5215 26 EAQLLELQSGDFEQFISLLVQ---VLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRA 102 (858)
T ss_pred HHHHHHhccccHHHHHHHHHH---HHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 457788999999999877776 344 34444456779999999988764434445556653 332 22
Q ss_pred cccCCChHHHHHHHHHHHHHhhh--CCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh-cCccchhchHHH
Q 000194 119 FEVKRDREILVLASKVLGHLARA--GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN-ASTVFNVHVAEF 195 (1880)
Q Consensus 119 l~~~~d~~v~~~aa~~l~~L~~~--~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~-~p~~l~~~l~~i 195 (1880)
+. +.++.....|++.++.+|.- +.+.++++.+..+.++- ++..++.+.+++.+++++++. +|..+...-+.+
T Consensus 103 L~-s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg----~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~i 177 (858)
T COG5215 103 LK-SPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVG----DEQPVSGKCESLGICGYHCESEAPEDLIQMSNVI 177 (858)
T ss_pred hc-CCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhcc----ccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHH
Confidence 32 56789999999999999874 67789998887777663 466778899999999999998 676777777888
Q ss_pred HHHHHHHhc--CCchhHHHHHHHHHHHHHHHHhhhc--hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc
Q 000194 196 VDAIWVALR--DPTLAVRERAVEALRACLRVIEKRE--TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT 271 (1880)
Q Consensus 196 ~~~i~~~l~--D~~~~VR~aA~~al~~~~~~i~~r~--~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~ 271 (1880)
+-.|..+-+ .+...||-+|..||...+..++..- ...++.+++.+++.. ..+ +.+.+|++.-+|..+....
T Consensus 178 l~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceat----q~~-d~e~q~aafgCl~kim~Ly 252 (858)
T COG5215 178 LFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEAT----QGN-DEELQHAAFGCLNKIMMLY 252 (858)
T ss_pred HHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhc----cCC-cHHHHHHHHHHHHHHHHHH
Confidence 877776553 7788999999999999776666421 124445555555443 333 5788999887887777666
Q ss_pred hhhhHHHHHHHHHHH-HHHhhcchhHHHHHHHHHhHhHhhh----------Ch------hhHHHHHHHHHHHHHHHhhcC
Q 000194 272 GEFMMSRYREVAEIV-LRYLEHRDRLVRLSITSLLPRIAHF----------LR------DRFVTNYLKICMNHILTVLRI 334 (1880)
Q Consensus 272 ~~~~~~~~~~i~~~l-l~~~~~~~~~Vr~~~~~~i~~la~~----------~~------~~f~~~yl~~~~~~Ll~~L~~ 334 (1880)
-+||.+|++..+-.+ .+...+.+..|...+++-+..+++- .| ..|.......++|.|++.|.+
T Consensus 253 Y~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~ 332 (858)
T COG5215 253 YKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEK 332 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHh
Confidence 689999999866544 4566888999999999999888742 11 124444456688888888865
Q ss_pred CC------C---cchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCC-chHHHHHH
Q 000194 335 PA------E---RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPV-MEPHVRGL 404 (1880)
Q Consensus 335 ~~------~---r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~-~~~~l~~l 404 (1880)
.. + ..+|-.||..++..+|+.+ +.+++..+.+.+...+-..++.+..+||.+.+.-.++ ++|++++.
T Consensus 333 q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i---~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qa 409 (858)
T COG5215 333 QGEDYYGDDWNPSMAASSCLQLFAQLKGDKI---MRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQA 409 (858)
T ss_pred cCCCccccccchhhhHHHHHHHHHHHhhhHh---HHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhh
Confidence 21 1 2477888888888888753 3335555666665444344566777777666521111 44555554
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHH
Q 000194 405 LDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQL 484 (1880)
Q Consensus 405 l~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1880)
+|-+.
T Consensus 410 lp~i~--------------------------------------------------------------------------- 414 (858)
T COG5215 410 LPGIE--------------------------------------------------------------------------- 414 (858)
T ss_pred hHHHH---------------------------------------------------------------------------
Confidence 44322
Q ss_pred HHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHH
Q 000194 485 ALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEK 564 (1880)
Q Consensus 485 Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~ 564 (1880)
T Consensus 415 -------------------------------------------------------------------------------- 414 (858)
T COG5215 415 -------------------------------------------------------------------------------- 414 (858)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH--HHHH
Q 000194 565 LLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHL 642 (1880)
Q Consensus 565 Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l 642 (1880)
..++|+..-|+..+.+++|+++.+.|..+.|.. ....
T Consensus 415 -----------------------------------------n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~v 453 (858)
T COG5215 415 -----------------------------------------NEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEV 453 (858)
T ss_pred -----------------------------------------HhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHH
Confidence 111122222222222222222222221111110 0000
Q ss_pred HHHHHHHhcCCCChHhHHHHHHHHHHHHH-------hCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHH
Q 000194 643 IQLLTYLEQSSADNKCREESAKLLGCLIR-------NCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDL 715 (1880)
Q Consensus 643 ~~~l~~l~~~~~~~~~r~~a~~~L~~l~~-------~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~L 715 (1880)
...+..+.+. ++.....+|.+-.++. ..+..+.||.+.|++.|+...... ..+.+.+...+.++|.|
T Consensus 454 sa~liGl~D~---p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~---~Ne~n~R~s~fsaLgtl 527 (858)
T COG5215 454 SASLIGLMDC---PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELA---LNESNLRVSLFSALGTL 527 (858)
T ss_pred HHHHhhhhcc---chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHH
Confidence 1111122221 2222333444333333 335667788889999988875432 13567788889999999
Q ss_pred HHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHH
Q 000194 716 ARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVL 795 (1880)
Q Consensus 716 a~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l 795 (1880)
...+++.+.+-+..+.....+.+. ..+..+|++...-.. .+++ ++...
T Consensus 528 i~~~~d~V~~~~a~~~~~~~~kl~---------~~isv~~q~l~~eD~---------~~~~------------elqSN-- 575 (858)
T COG5215 528 ILICPDAVSDILAGFYDYTSKKLD---------ECISVLGQILATEDQ---------LLVE------------ELQSN-- 575 (858)
T ss_pred HhhcchhHHHHHHHHHHHHHHHHH---------HHHHHhhhhhhhHHH---------HHHH------------HHHHH--
Confidence 988887776655555555444332 234444443211100 0111 11111
Q ss_pred HHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhH
Q 000194 796 KVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYH 875 (1880)
Q Consensus 796 ~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~ 875 (1880)
.+|.+.++-.-+ + ++++ -..+.+++.++++|.....+..|
T Consensus 576 -~~~vl~aiir~~----------------~--------~~ie---------------~v~D~lm~Lf~r~les~~~t~~~ 615 (858)
T COG5215 576 -YIGVLEAIIRTR----------------R--------RDIE---------------DVEDQLMELFIRILESTKPTTAF 615 (858)
T ss_pred -HHHHHHHHHHhc----------------C--------CCcc---------------cHHHHHHHHHHHHHhccCCchhh
Confidence 122222210000 0 0111 11256788888998765455678
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCC
Q 000194 876 QKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLP 955 (1880)
Q Consensus 876 ~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~ 955 (1880)
..|..||..+..+++.+|..|+++++|-+...++..+.-+-..+...+|.+...++..|.+|.+.+|..+.+.+......
T Consensus 616 ~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~ 695 (858)
T COG5215 616 GDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATH 695 (858)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhc
Confidence 89999999999999999999999999999999954433456677788899999999999999999999999888765432
Q ss_pred cccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCc--------hhhHHHHHHHHHHHhcchhhhhh
Q 000194 956 ATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCND--------YTYVLDILHTLEVFGGTLDEHMH 1027 (1880)
Q Consensus 956 ~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~--------~~~~~~il~~l~~~g~~~~~~~~ 1027 (1880)
| .++..++++++.++.++|.+|.+|+..++-++.+.-+- +...+ ......+..+++.+|....+-+.
T Consensus 696 ---R-~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~-~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~ 770 (858)
T COG5215 696 ---R-DLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASEL-DPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVR 770 (858)
T ss_pred ---c-ccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-CCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 2 24558999999999999999999999999888765431 21111 11223455566666666655566
Q ss_pred hhHHHHHHhh
Q 000194 1028 LLLPALIRLF 1037 (1880)
Q Consensus 1028 ~ilp~l~~~l 1037 (1880)
.++|.+..++
T Consensus 771 ~v~Pyv~sif 780 (858)
T COG5215 771 SVLPYVISIF 780 (858)
T ss_pred HhhhHHHHHH
Confidence 6666555443
|
|
| >KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-26 Score=298.90 Aligned_cols=621 Identities=17% Similarity=0.204 Sum_probs=387.9
Q ss_pred CCCChhhHHHHHHHHHHHHHhcC---CCHHHHHHHHHHhhChhhHHHhHhHHHHHHHHhhcHH---HHHHHHHHHH-HHh
Q 000194 1185 QRSTKEDWAEWMRHLSIELLKES---PSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNAT---SQKHLVQSLE-MAF 1257 (1880)
Q Consensus 1185 ~~~~~~~w~~W~~~~~~~ll~~s---ps~~ir~c~~la~~~~~la~~Lf~~aF~s~w~~l~~~---~~~~l~~~l~-~~l 1257 (1880)
+..+.+.|..|+..++..++... -++.. +..++--....+-.-|.+|....++. ........|. ..+
T Consensus 1617 ~~t~~es~s~w~s~~~ls~f~~c~~~~~~~~------~st~~~~~~t~i~~~i~~~l~~~s~~~~~~~~~~~~yi~~~~~ 1690 (2806)
T KOG0892|consen 1617 QQTNNESLSNWLSEFALKLFNMCGRSSTTHS------LSTYMANFSTSICQLIICLLLLESDFNPGNNLKQKDYIFELIL 1690 (2806)
T ss_pred hhhhccchhhHHHHHHHHHHHHHhccCCchh------hccccccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHh
Confidence 45678899999999998876541 11111 22333333334444455555444443 2223333333 233
Q ss_pred CCCC-CChHHHHHHHHHHHHhhhCCC-----------CCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcH
Q 000194 1258 SSPN-IPPEILATLLNLAEFMEHDEK-----------PLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPV 1325 (1880)
Q Consensus 1258 ~~~~-~p~~i~q~ll~l~efm~~~~~-----------~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~ 1325 (1880)
.+-. ...++..+-+|+.++..++.. .++++.........+|..|...+.+.-....+. ....
T Consensus 1691 ~sl~~n~~~~~~m~~ni~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~e~s~~~~t~~~~k~------k~~e 1764 (2806)
T KOG0892|consen 1691 SSLLKNSNSIFKMDMNILKYLRRQLGCHAFNPFEIYYWLPIVYSVAASTAYDCLLFEYSLLSLTIHSPKN------KRDE 1764 (2806)
T ss_pred hccccchhHHHHHHHHHHHHHHHhhchhhhcchhhhccccHHHHHHHHHHHHHHHHHHHHHHHhhcCccc------chhH
Confidence 3322 334688888999999887643 356666666777777877777776654433211 1123
Q ss_pred HHHHHHHH----HHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHH
Q 000194 1326 AVVEALIH----INNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCL 1401 (1880)
Q Consensus 1326 ~~~e~L~~----iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl 1401 (1880)
..+..|++ +|.++|+||+.+|+........ .++ .-+|+.++|..|+..|+-.- ..+. .+...|..+.|
T Consensus 1765 ~~~~~lqDil~~~y~~I~~pD~lyG~~~~~~~~~-~~l--~~~~he~~w~~aL~~~d~~~-~~~s----s~~~~~~~~sL 1836 (2806)
T KOG0892|consen 1765 LDITLLQDILKKAYESINCPDALYGIKRPTSLKN-LIL--ITAEHEKNWPRALSYYDLAD-MYPS----SEDEAGFINSL 1836 (2806)
T ss_pred HHHHHHHHHHHHHHhhCCCcchhcccCCcccccc-ccc--chhhhhhhHHHHHHhhcchh-hccc----hHhHhHHHHHH
Confidence 34444544 5999999999999987543322 222 23899999999999998653 2222 24569999999
Q ss_pred HHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHh---hcCCCCcchhhccccccccCCCCCchH
Q 000194 1402 AALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVS---RLDDGDESKLRGLGNTAANGDGSSNGT 1478 (1880)
Q Consensus 1402 ~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~ 1478 (1880)
.+.|.-..+.-+.++.|... ..++......-++|||++|+||....+.. .... +. +| ..
T Consensus 1837 q~~g~~~I~~~y~~Gl~~~~-~~~~~~~~e~~Ye~awr~g~Wd~~t~~~~~~~~~~~-~~--y~--------------e~ 1898 (2806)
T KOG0892|consen 1837 QNAGFFHILEFYIDGLKSND-KIDEPSNEELVYEAAWRLGKWDILTLSLVDQNKTKG-DY--YH--------------ES 1898 (2806)
T ss_pred HHhcchhHHHHHhcChhhhh-hhhhhhhhhhhHHHHHhcCCcccCCcchhhhhhhhc-hh--HH--------------HH
Confidence 99999888887777776432 44455555677999999999999876652 2111 10 00 11
Q ss_pred HHHHHHHHHhc----------------------ChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHH
Q 000194 1479 FFRAVLLVRRG----------------------KVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRN 1536 (1880)
Q Consensus 1479 f~~a~~~i~~~----------------------~~~esy~ray~~l~~lq~L~ELeE~i~~~~~~~~~~~~~~~~~~l~~ 1536 (1880)
.|.+..+++.. ..-|+-.--|..+.++|.+.++|-+.+....... +.....+.-
T Consensus 1899 ~f~~l~al~ere~e~~yl~le~a~~~~v~~i~~~see~~~~~y~~l~~L~~l~~l~~i~~l~~~~~~----~~~~~~~~~ 1974 (2806)
T KOG0892|consen 1899 LFEALRALHEREIEGSYLHLEDARNKKVLLINPNSEESSLSFYATLYDLQFLVTLEPIRCLQSTADK----HQSNTDILQ 1974 (2806)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhhHhhhhhhcc----hhhhhHHHH
Confidence 22333333221 1345666679999999999999999874432111 222344667
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhhcCCc-----------ccHHH-----HHHHHHHHHhcCChhHHHHH---HHHHhc
Q 000194 1537 MWTERIQGTKRNVEVWQALLAVRALVLPPT-----------EDVET-----WLKFASLCRKSGRISQARST---LVKLLQ 1597 (1880)
Q Consensus 1537 ~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~-----------e~~~~-----~lk~a~laRk~g~~~~a~~~---L~~l~~ 1597 (1880)
.|++-++.....++..+..+.-|+.+++.. ++... -+....++|.....+.-.+. +.....
T Consensus 1975 k~~t~~q~~~~~~~~~~~~~~d~n~l~s~~~l~~~l~~~~~~~~~~~l~~~g~e~~~la~~~~~~~~~~~~~r~~~~i~~ 2054 (2806)
T KOG0892|consen 1975 KWKTNLQLSSQLMECLSLLIEDRNVLLSLLQLHKQLSESQLADLASLLKYYGLELCKLAESFLIADLLQNIARAFPVIML 2054 (2806)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhchhhHHhHHHhhHHHHH
Confidence 788888777788888888888777776421 11111 11223333333322222221 111111
Q ss_pred CCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHH
Q 000194 1598 YDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLK 1677 (1880)
Q Consensus 1598 ~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~ 1677 (1880)
.. .-...++.+...|+.+.. +..+++-.....-++..- ..+. ........+.....|++.
T Consensus 2055 ~~------------~~~~~~s~aq~~~k~~~~-~~~e~iL~~~~~kne~~~--~~s~-----~~~~~~~lk~~~~~~~a~ 2114 (2806)
T KOG0892|consen 2055 SI------------KLLCKFSLAQENLKHDID-KLSEAILWQRDEKNEAII--SLSE-----SLAKNNSLKEFPSDIYAV 2114 (2806)
T ss_pred HH------------HHHhhhhhhhhhccchhh-hhHHHHHHHHHhhhhHHH--HHHh-----hhhhcchhhhhHHHHHHH
Confidence 00 011122333334444322 112222111111011000 0000 000001122456789999
Q ss_pred HhhhHhhcCCCCCCCCHHHHHHHHHH-HHhhcccc------------hHHHHHHHHHHHHHHHhhhcc------------
Q 000194 1678 LGSWKRALPPGLDDESIPEIIAAYRN-ATQCATKW------------GKAWHSWALFNTAVMSHYTLR------------ 1732 (1880)
Q Consensus 1678 lg~w~~~~~~~~~~~~~~~i~~~y~~-a~~~~~~~------------~k~w~~wA~~n~~~~~~~~~~------------ 1732 (1880)
+|+|..+.+ .+....|++.|.. +.....++ .++|.+.|.|-|..+...+.+
T Consensus 2115 ~g~Wlaetk----~ens~~i~e~yl~~a~~~ae~~d~e~~~~~~~~~s~a~~~~akysd~~~~~~~~~~~sse~et~~~l 2190 (2806)
T KOG0892|consen 2115 LGKWLAETK----SENSALISEKYLEKAVSLAEHYDNESCKALIYCQSFAQFCLAKYSDPDYQEDEERRSSSEFETLKDL 2190 (2806)
T ss_pred HHHHHHHhh----ccchhhhHHHHHHHHHHHhhhcchhHHHHHHhHHHHHHHHHHhccCchhhhHHHHHhHHHHhhHHHH
Confidence 999999886 4566677776653 43332221 368888888877665533210
Q ss_pred ------C--------------------------------CCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHH
Q 000194 1733 ------G--------------------------------LPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLT 1774 (1880)
Q Consensus 1733 ------~--------------------------------~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLt 1774 (1880)
+ .++.+.+|+..|++||++++..+ .++.-.-+.|+++
T Consensus 2191 ~k~~~~~~~~~~er~~q~~~~~~~~~~rq~~lDe~~l~~l~~~r~~fL~~Alt~Yl~cl~~~-----~~~D~~~i~R~cs 2265 (2806)
T KOG0892|consen 2191 QKLERSTVEASNEREEQMRKNHHVRVQRQLILDEEELLALSEDRSKFLTLALTNYLNCLSES-----DEYDVDLIFRCCS 2265 (2806)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHhhc-----ccccHHHHHHHhh
Confidence 0 01245679999999999999885 5677777999999
Q ss_pred HHHhcCCcHHHHHHHHhcccCCChhhHHHHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhCchhhHHHHHHHhcC-----
Q 000194 1775 LWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIH-SNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKS----- 1848 (1880)
Q Consensus 1775 Lwf~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQLiaRi~-~~~~~v~~~l~~lL~~i~~~hPqa~ly~L~~~~kS----- 1848 (1880)
+||++.+..+++..+++.+.+||+|+|++|+.||.|||+ ..+..+++.+..|+.+++++||+|++|.|+.....
T Consensus 2266 lWfsns~~~evn~~mk~~i~~ipsyKFip~~yQlAaRl~~~~~~~fq~~L~~Li~r~~~dhPyhtly~L~~L~~~~rd~e 2345 (2806)
T KOG0892|consen 2266 LWFSNSHLKEVNNSLKHEIQTVPSYKFIPLVYQLAARLGNSENNSFQKSLTSLIYRVGRDHPYHTLYQLLSLVNAVRDNE 2345 (2806)
T ss_pred hhccccchHHHHHHHHHHhccCCcchhHHHHHHHHHHhccccCchHHHHHHHHHHHHhccCchHHHHHHHHHHhcCcChh
Confidence 999999999999999999999999999999999999999 68889999999999999999999999999987632
Q ss_pred -----C---cHHHHHHHHHHHHHHhhcccccccccc
Q 000194 1849 -----I---SNLRRAAAQEVVDKVRQHSGVLVDQSC 1876 (1880)
Q Consensus 1849 -----~---~~~R~~~a~~Il~~~~~~~~~lv~~a~ 1876 (1880)
. +..|+.+|+.++.......+++|.|.+
T Consensus 2346 ~~n~sr~sl~~~rki~a~l~~~~v~~~~~~~v~~v~ 2381 (2806)
T KOG0892|consen 2346 DENRSRGSIDRDRKIAAELDLCDVNQGAGNMVRQLE 2381 (2806)
T ss_pred hhhhcccccchhHHHHHHHhhhHhhccchhHHHHHH
Confidence 1 257888899999999988888888743
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=261.03 Aligned_cols=500 Identities=20% Similarity=0.291 Sum_probs=379.9
Q ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcch------hhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcC
Q 000194 556 RLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDD------FLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEK 629 (1880)
Q Consensus 556 ~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~------~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~ 629 (1880)
+.++.+++++++- +..++|.+|..++.+++ .|.. +..-..++..+|...+|++++||......+.-|.+.
T Consensus 170 rpl~~mipkfl~f-~~h~spkiRs~A~~cvN---q~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 170 RPLNIMIPKFLQF-FKHPSPKIRSHAVGCVN---QFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred CchHHhHHHHHHH-HhCCChhHHHHHHhhhh---heeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 4578888898875 68899999999999885 2211 111235788999999999999999999999999999
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHh--CcccccCchHHHHHHHHHHhccCCC----------
Q 000194 630 NPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRN--CERLIRPYIAPIHKALVARLLEGTG---------- 697 (1880)
Q Consensus 630 ~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~--~~~~~~py~~~il~~ll~~l~~~~~---------- 697 (1880)
.|..++|+++.++.-.+...++. +..+.-+||+....+++. ++..+.||++.++++|+..+...+.
T Consensus 246 r~dkl~phl~~IveyML~~tqd~--dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~ee 323 (885)
T KOG2023|consen 246 RPDKLVPHLDNIVEYMLQRTQDV--DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEE 323 (885)
T ss_pred cHHhcccchHHHHHHHHHHccCc--chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccc
Confidence 99999999998776556555543 455778899999999987 6788999999999999987642210
Q ss_pred ----C-------------------------------------CCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHH
Q 000194 698 ----I-------------------------------------NANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE 736 (1880)
Q Consensus 698 ----~-------------------------------------~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~ 736 (1880)
+ ..+.+++.....+++.|+.+.|+++ ++.++|.+.+
T Consensus 324 D~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el---L~~l~PlLk~ 400 (885)
T KOG2023|consen 324 DESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL---LPILLPLLKE 400 (885)
T ss_pred cccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH---HHHHHHHHHH
Confidence 0 0125677778889999999988765 4467888888
Q ss_pred HHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccC
Q 000194 737 ALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLS 816 (1880)
Q Consensus 737 ~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~ 816 (1880)
.|... .+.+|++++.+||.+++++-.-+.||. |++++.+++.|.+ ..+-||.-+..+++..|. |. .
T Consensus 401 ~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~L--peLip~l~~~L~D-KkplVRsITCWTLsRys~---wv---~---- 466 (885)
T KOG2023|consen 401 HLSSE-EWKVREAGVLALGAIAEGCMQGFVPHL--PELIPFLLSLLDD-KKPLVRSITCWTLSRYSK---WV---V---- 466 (885)
T ss_pred HcCcc-hhhhhhhhHHHHHHHHHHHhhhcccch--HHHHHHHHHHhcc-CccceeeeeeeeHhhhhh---hH---h----
Confidence 77753 688999999999999999876666764 8999999999964 467888877777666441 11 0
Q ss_pred CCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCC
Q 000194 817 GSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY 896 (1880)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~ 896 (1880)
..+.++|+.. ++..|++.+-|.. ..++.+++.|+..+-...|...+||
T Consensus 467 ------------------------------~~~~~~~f~p-vL~~ll~~llD~N-K~VQEAAcsAfAtleE~A~~eLVp~ 514 (885)
T KOG2023|consen 467 ------------------------------QDSRDEYFKP-VLEGLLRRLLDSN-KKVQEAACSAFATLEEEAGEELVPY 514 (885)
T ss_pred ------------------------------cCChHhhhHH-HHHHHHHHHhccc-HHHHHHHHHHHHHHHHhccchhHHH
Confidence 0112345544 4555556555554 3467788888888888889999999
Q ss_pred cchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHH--HhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHH
Q 000194 897 LPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIR--KYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLC 974 (1880)
Q Consensus 897 l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~--~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~ 974 (1880)
+..|+..+...++..+..-.-.+++++|++.+.+|.+.. .|++-+|+-+.+.|+..+. ++ ....+++.|+.+++
T Consensus 515 l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd--~D--KdLfPLLEClSsia 590 (885)
T KOG2023|consen 515 LEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSD--SD--KDLFPLLECLSSIA 590 (885)
T ss_pred HHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCc--cc--chHHHHHHHHHHHH
Confidence 999999999999877655455677999999999998874 7999999999999987542 22 22348999999999
Q ss_pred HHhhhhhhccchhhHHHHHHhcccc---------cc---cCchh---hHHHHHHHHHH-Hhcchhhhhhh--hHHHHHHh
Q 000194 975 LALNDEFRTHLPVILPCCIQVLSDA---------ER---CNDYT---YVLDILHTLEV-FGGTLDEHMHL--LLPALIRL 1036 (1880)
Q Consensus 975 ~~l~~~f~~yl~~l~p~ll~~l~~~---------~~---~~~~~---~~~~il~~l~~-~g~~~~~~~~~--ilp~l~~~ 1036 (1880)
.+++..|.||.++++....+++.+. +. ..++. +++..++.+.. +|.++++.+.. ++..+...
T Consensus 591 ~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C 670 (885)
T KOG2023|consen 591 SALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQC 670 (885)
T ss_pred HHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHH
Confidence 9999999999999999998888621 10 12222 34666666644 66666655532 34444444
Q ss_pred hcCCCcHHHHHHHHHHHHhhccc--ccccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhccccccchhHHHHHH
Q 000194 1037 FKVDAPVDIRRAAIETLTRLIPR--VQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLL 1114 (1880)
Q Consensus 1037 l~~~~~~~vr~~ai~~l~~l~~~--~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~fip~i~~~l 1114 (1880)
+.. ...+||++|...+|++++. -.+.|++...+..+...++..+-...++|+.+++.++.++|.+..+|++.|..-|
T Consensus 671 ~~D-~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L 749 (885)
T KOG2023|consen 671 LQD-EVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDL 749 (885)
T ss_pred hcc-CChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHH
Confidence 433 4788999999999999875 3466788888887777776666788999999999999999999999988776655
Q ss_pred H
Q 000194 1115 L 1115 (1880)
Q Consensus 1115 ~ 1115 (1880)
.
T Consensus 750 ~ 750 (885)
T KOG2023|consen 750 I 750 (885)
T ss_pred H
Confidence 4
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-20 Score=225.52 Aligned_cols=801 Identities=17% Similarity=0.175 Sum_probs=496.7
Q ss_pred HHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhc-
Q 000194 151 EFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE- 229 (1880)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~- 229 (1880)
...++-++..| ++++.....-|+..++-++...|. .++..+++.+..++-......|+.+.-+|......+.-..
T Consensus 46 ~kvv~~lLklL-~D~ngEVQnlAVKClg~lvsKvke---~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~ 121 (1233)
T KOG1824|consen 46 RKVVKMLLKLL-EDKNGEVQNLAVKCLGPLVSKVKE---DQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSS 121 (1233)
T ss_pred hHHHHHHHHHH-hccCcHHHHHHHHHHHHHHhhchH---HHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccc
Confidence 34455555555 456666677788888888855443 4778888888888777777888888888876644333100
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCC-hhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhH
Q 000194 230 TRWRVQWYYRMFEATQDGLGRNAP-VHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRI 308 (1880)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~l 308 (1880)
........+++.+.+.+++....+ ..++--++..++.++...|+++.+.-..+...++..+.+....||+.++.+|+.+
T Consensus 122 ~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~l 201 (1233)
T KOG1824|consen 122 SFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHL 201 (1233)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHH
Confidence 113345567777877777654322 2356677778888888888888775556777777778888899999999999999
Q ss_pred hhhChhhHHHHHHHHHHHHHHHhhcCCC---CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCC---CCCCCchH
Q 000194 309 AHFLRDRFVTNYLKICMNHILTVLRIPA---ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR---RGKPSLEA 382 (1880)
Q Consensus 309 a~~~~~~f~~~yl~~~~~~Ll~~L~~~~---~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~---~~~~~~~a 382 (1880)
|.+.+.. .+..++.+|+.-|.+.. .-....+|||.++++.|.++..|++.+++.+.++.... ..+.++..
T Consensus 202 a~~~~~~----ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~ 277 (1233)
T KOG1824|consen 202 ASSCNRD----LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYC 277 (1233)
T ss_pred HHhcCHH----HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHH
Confidence 9988763 24677888888776542 22468899999999999999999999999999998433 22335678
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 000194 383 LACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPI 462 (1880)
Q Consensus 383 ~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~ 462 (1880)
+++++.+......++.||.++++..+++ .|+ .+|.-.+.
T Consensus 278 lQale~fl~rcp~ei~p~~pei~~l~l~-------------------------------yis----YDPNy~yd------ 316 (1233)
T KOG1824|consen 278 LQALESFLRRCPKEILPHVPEIINLCLS-------------------------------YIS----YDPNYNYD------ 316 (1233)
T ss_pred HHHHHHHHHhChhhhcccchHHHHHHHH-------------------------------Hhc----cCCCCCCC------
Confidence 9999999999888999999888776442 221 11110000
Q ss_pred CCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCC--ChHHHHHHHHHHHHhhhccCCCcccc
Q 000194 463 RGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDE--DKATRKDAALCCCKLVANSFSGVSFT 540 (1880)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~--~~~VR~aAa~~~~~l~~~~~~~~~~~ 540 (1880)
++|.++ + +++..-+. + + .-..|-|++ ++.||+||++++..++..-.+
T Consensus 317 ----------~~eDed------~-~~~ed~eD--d---e----~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E----- 365 (1233)
T KOG1824|consen 317 ----------TEEDED------A-MFLEDEED--D---E----QDDEYSDDEDMSWKVRRAAAKCLEAVISSRLE----- 365 (1233)
T ss_pred ----------Cccchh------h-hhhhcccc--c---h----hccccccccchhHHHHHHHHHHHHHHHhccHH-----
Confidence 000000 0 00000000 0 0 012455544 589999999988877753221
Q ss_pred ccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc----CCC-----------------Ccch-hhc--
Q 000194 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY----GNR-----------------GFDD-FLA-- 596 (1880)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~----~~~-----------------~fd~-~L~-- 596 (1880)
+.......+-+.++. -+.|.++.|+..++.++. -.. .++. +|.
T Consensus 366 ------------~L~~~~q~l~p~lI~-RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~ 432 (1233)
T KOG1824|consen 366 ------------MLPDFYQTLGPALIS-RFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQ 432 (1233)
T ss_pred ------------HHHHHHHHhCHHHHH-HHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhh
Confidence 123333333344443 368889999988777641 000 1111 121
Q ss_pred cHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHH-HHHHHHhCcc
Q 000194 597 QADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL-LGCLIRNCER 675 (1880)
Q Consensus 597 ~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~-L~~l~~~~~~ 675 (1880)
.+.+++.+-..+.+.+...|..++..|..+....|+...+++...+.-....+.+-......+..++-. .+.++.+.++
T Consensus 433 ~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~ 512 (1233)
T KOG1824|consen 433 VPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPE 512 (1233)
T ss_pred hHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChh
Confidence 234566666666676767889999999999999998776666655554555554321233445555544 4556677789
Q ss_pred cccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhc-------CCchhhhHHhHHHHHHHHHhcC-CchhhH
Q 000194 676 LIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG-------GFGMRQYISELMPLIVEALLDG-AAVTKR 747 (1880)
Q Consensus 676 ~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~-------g~~~~~~~~~l~p~l~~~l~d~-~~~~~r 747 (1880)
.|.||++.+.+.++....++ -+.+...++...+.+.++. +.+..||+.+++...++.|... .+.++|
T Consensus 513 ~fhp~~~~Ls~~v~~aV~d~-----fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVk 587 (1233)
T KOG1824|consen 513 VFHPHLSALSPPVVAAVGDP-----FYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVK 587 (1233)
T ss_pred hcccchhhhhhHHHHHhcCc-----hHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHH
Confidence 99999999999999998875 7788888888888888764 3567899999999999988632 367899
Q ss_pred HHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCC
Q 000194 748 EVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAAS 827 (1880)
Q Consensus 748 ~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~ 827 (1880)
+.|+.++|+++...|.... .+.|..++.++.-++++ -+|..|+|++..+.. .|...
T Consensus 588 eraIscmgq~i~~fgD~l~--~eL~~~L~il~eRl~nE---iTRl~AvkAlt~Ia~-S~l~i------------------ 643 (1233)
T KOG1824|consen 588 ERAISCMGQIIANFGDFLG--NELPRTLPILLERLGNE---ITRLTAVKALTLIAM-SPLDI------------------ 643 (1233)
T ss_pred HHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHhch---hHHHHHHHHHHHHHh-cccee------------------
Confidence 9999999999999987644 34588999999999865 679999999887642 11110
Q ss_pred CCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCC-cchhhHHHHH
Q 000194 828 DSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY-LPKVLPDLFH 906 (1880)
Q Consensus 828 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~-l~~iip~ll~ 906 (1880)
+ + .+ ..+.++..|..-++... .....+...++..++++.+....++ ++.++-.+..
T Consensus 644 ---------~-----l---~~-----~l~~il~~l~~flrK~~-r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~ 700 (1233)
T KOG1824|consen 644 ---------D-----L---SP-----VLTEILPELASFLRKNQ-RALRLATLTALDKLVKNYSDSIPAELLEAVLVELPP 700 (1233)
T ss_pred ---------e-----h---hh-----hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhh
Confidence 0 0 00 11333444444443221 1233456667777777776655443 3444444444
Q ss_pred HHhcCCcchhHHHHHHHHHHHHHH----HHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhh
Q 000194 907 TVRTCDDYLKDYITWKLGTLVSIV----RQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFR 982 (1880)
Q Consensus 907 ~l~~~~~~~~~~~~~~l~~lv~~~----~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~ 982 (1880)
.+..++-.+-+..+..+.++..+- -.+-.+++++++..+..-+- +.. . ...++....+++..-..++.
T Consensus 701 Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spll----qg~---a-l~~~l~~f~alV~t~~~~l~ 772 (1233)
T KOG1824|consen 701 LISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLL----QGG---A-LSALLLFFQALVITKEPDLD 772 (1233)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccc----cch---H-HHHHHHHHHHHHhcCCCCcc
Confidence 444333334455555555555432 23445777777776653221 110 0 01233333333333333332
Q ss_pred ccchhhHHHHHHhcccccc---c--CchhhHHHHHHHHHHHhcchhhhhhhhH-HHHHHhhcCCCcHHHHHHHHHHHHhh
Q 000194 983 THLPVILPCCIQVLSDAER---C--NDYTYVLDILHTLEVFGGTLDEHMHLLL-PALIRLFKVDAPVDIRRAAIETLTRL 1056 (1880)
Q Consensus 983 ~yl~~l~p~ll~~l~~~~~---~--~~~~~~~~il~~l~~~g~~~~~~~~~il-p~l~~~l~~~~~~~vr~~ai~~l~~l 1056 (1880)
| -.++..+..+-. + ..+..-..+-.|..++.....+--..+. ..++++.....+..+|.-|+-++|.+
T Consensus 773 -y-----~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGEl 846 (1233)
T KOG1824|consen 773 -Y-----ISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGEL 846 (1233)
T ss_pred -H-----HHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhh
Confidence 3 334444432210 0 1122222233333333222222222222 22333333446788999999999999
Q ss_pred cccccccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhccccccchhHHHHHH
Q 000194 1057 IPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLL 1114 (1880)
Q Consensus 1057 ~~~~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~fip~i~~~l 1114 (1880)
.+..+.++.. .+-..++..+++++++++.+|-.+|+.+..- ....|+|-|...+
T Consensus 847 gr~~~~s~~~-e~~~~iieaf~sp~edvksAAs~ALGsl~vg---nl~~yLpfil~qi 900 (1233)
T KOG1824|consen 847 GRRKDLSPQN-ELKDTIIEAFNSPSEDVKSAASYALGSLAVG---NLPKYLPFILEQI 900 (1233)
T ss_pred ccCCCCCcch-hhHHHHHHHcCCChHHHHHHHHHHhhhhhcC---chHhHHHHHHHHH
Confidence 9987765532 2223556889999999999999999999761 2234555554443
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-19 Score=215.89 Aligned_cols=868 Identities=15% Similarity=0.179 Sum_probs=505.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCC---CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHH----HHHHHhhhcCCChh
Q 000194 12 GPPAPGAGGGSLDALNRILADLCTHG---NPKEGASLALRKHIEEQARDLGGEAFSRFMDQL----YDRISGLLESNDAA 84 (1880)
Q Consensus 12 ~~~~~~~~~~~~~~~~~l~~~l~s~~---~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l----~~~i~~l~~s~~~~ 84 (1880)
+|| -....-++.+..++.+.|++.. ++..++--+..+++...+.. |..++... .+-+..-+.++-..
T Consensus 116 l~P-~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr-----~g~ll~~fh~~il~~l~~ql~s~R~a 189 (1233)
T KOG1824|consen 116 LPP-SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR-----FGTLLPNFHLSILKCLLPQLQSPRLA 189 (1233)
T ss_pred CCC-ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh-----hcccCcchHHHHHHHHhhcccChHHH
Confidence 677 4557788899999999998764 33333322333333222211 22222222 22233335567777
Q ss_pred hhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc--
Q 000194 85 ENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-- 162 (1880)
Q Consensus 85 ~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~-- 162 (1880)
.|+.++.|++.|.....++ -+..-....++++=+ .......+.--++++.++...|.....+.++.++.+.+|..
T Consensus 190 VrKkai~~l~~la~~~~~~--ly~~li~~Ll~~L~~-~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~ 266 (1233)
T KOG1824|consen 190 VRKKAITALGHLASSCNRD--LYVELIEHLLKGLSN-RTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKI 266 (1233)
T ss_pred HHHHHHHHHHHHHHhcCHH--HHHHHHHHHHhccCC-CCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhccc
Confidence 8899999999997654222 111111233344333 34567788889999999998777777788888888888874
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 000194 163 GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALR-DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMF 241 (1880)
Q Consensus 163 ~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~-D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l 241 (1880)
++.++..|...+++++.+.+.||.-+.||.+.++...+..+. ||+..--.. .+--...++. .+...+
T Consensus 267 e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~-eDed~~~~ed---~eDde~-------- 334 (1233)
T KOG1824|consen 267 EEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTE-EDEDAMFLED---EEDDEQ-------- 334 (1233)
T ss_pred ccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCc-cchhhhhhhc---cccchh--------
Confidence 455667999999999999999999999999999999999886 887532110 1111111111 111000
Q ss_pred HHHHhhccCCC--ChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhC-------
Q 000194 242 EATQDGLGRNA--PVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFL------- 312 (1880)
Q Consensus 242 ~~~~~~l~~~~--~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~------- 312 (1880)
.+.-.+.+ +|.+|.+|+.++..++..-.|.+...+..+++.+++.++.|++.|+..++++.-.+-...
T Consensus 335 ---~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~ 411 (1233)
T KOG1824|consen 335 ---DDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVL 411 (1233)
T ss_pred ---ccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccc
Confidence 01111222 499999999999999998888888899999999999999999999998887765543111
Q ss_pred ---------hhhHHHHHHHHHHHHHHHhhcC------CCCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCC
Q 000194 313 ---------RDRFVTNYLKICMNHILTVLRI------PAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGK 377 (1880)
Q Consensus 313 ---------~~~f~~~yl~~~~~~Ll~~L~~------~~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~ 377 (1880)
+..|-..++.+..+.+...+.+ .+.|..+|..|.++....++.+.++++.+++.|...|.+++..
T Consensus 412 ~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSss 491 (1233)
T KOG1824|consen 412 ADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSS 491 (1233)
T ss_pred cCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccch
Confidence 1112235777777777766642 2356789999999999999989999999999999999876543
Q ss_pred C--CchHHHHHHHHHHHhCC-CchHHHHHHHHHHHhcCCCHHHH---HHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCC
Q 000194 378 P--SLEALACVGNIARAMGP-VMEPHVRGLLDIMFSAGLSTTLV---DALEQITVSIPSLLPTIQDRLLDCISFVLSKSH 451 (1880)
Q Consensus 378 ~--~~~a~~~l~~la~~~g~-~~~~~l~~ll~~l~~~~ls~~l~---~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~ 451 (1880)
. ...++.++..+....|+ .|.||+..+.+++..+--.+... ++|... ..+.+.|. +
T Consensus 492 s~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~------------~~lvkvir------p 553 (1233)
T KOG1824|consen 492 SNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVC------------QQLVKVIR------P 553 (1233)
T ss_pred HHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHH------------HHHHHHhc------c
Confidence 2 24566666666556665 79999999888877542222211 122111 01111110 0
Q ss_pred CCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHH---HHHhhhcc--CCChHHHHHHHHHH
Q 000194 452 YSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFAR---DSVVLYLD--DEDKATRKDAALCC 526 (1880)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~---~~~~~~l~--~~~~~VR~aAa~~~ 526 (1880)
.. ++ ..|+ ..||+. .+++..+. +.+.+||.+|..++
T Consensus 554 l~---~~-------------------------------~~~d-----~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscm 594 (1233)
T KOG1824|consen 554 LQ---PP-------------------------------SSFD-----ASPYVKTMYDCTLQRLKATDSDQEVKERAISCM 594 (1233)
T ss_pred cC---CC-------------------------------ccCC-----CChhHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 00 00 0011 123333 34444443 45789999998888
Q ss_pred HHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC----CCCcc--hhhccHhh
Q 000194 527 CKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG----NRGFD--DFLAQADC 600 (1880)
Q Consensus 527 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~----~~~fd--~~L~~~~~ 600 (1880)
++++..... ....-+..+++.|++..-.|+ .|.+++++++. .-.++ +.| .++
T Consensus 595 gq~i~~fgD-----------------~l~~eL~~~L~il~eRl~nEi---TRl~AvkAlt~Ia~S~l~i~l~~~l--~~i 652 (1233)
T KOG1824|consen 595 GQIIANFGD-----------------FLGNELPRTLPILLERLGNEI---TRLTAVKALTLIAMSPLDIDLSPVL--TEI 652 (1233)
T ss_pred HHHHHHHhh-----------------hhhhhhHHHHHHHHHHHhchh---HHHHHHHHHHHHHhccceeehhhhH--HHH
Confidence 877754321 122335666777777655544 56677776641 11122 111 234
Q ss_pred HHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCc
Q 000194 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680 (1880)
Q Consensus 601 l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py 680 (1880)
++.+...+.......|......+..|.+.....+.+++-+.++.-+..+-.. .+...-+.|..++..++...+..+...
T Consensus 653 l~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lise-sdlhvt~~a~~~L~tl~~~~ps~l~~~ 731 (1233)
T KOG1824|consen 653 LPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISE-SDLHVTQLAVAFLTTLAIIQPSSLLKI 731 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 5555555544445677778888888877765555555544443333333333 466777889999999998877777777
Q ss_pred hHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHH----HH
Q 000194 681 IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTL----GQ 756 (1880)
Q Consensus 681 ~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~L----g~ 756 (1880)
..++++.++..++.+.. ..+.....+.-+..+.....+.+. |. .++..+..-.-++........|..++ ++
T Consensus 732 ~~~iL~~ii~ll~Spll---qg~al~~~l~~f~alV~t~~~~l~-y~-~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~ 806 (1233)
T KOG1824|consen 732 SNPILDEIIRLLRSPLL---QGGALSALLLFFQALVITKEPDLD-YI-SLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAA 806 (1233)
T ss_pred hhhhHHHHHHHhhCccc---cchHHHHHHHHHHHHHhcCCCCcc-HH-HHHHHHcCCcccccccchhHHHHHHHHHHHHH
Confidence 77888888888876521 111222222333334333333332 22 22222221111111111223344443 44
Q ss_pred HHhhcCcccccCCcchHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCC
Q 000194 757 VVQSTGYVITPYNEYPQLLGLLLKMLNG-ELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQP 835 (1880)
Q Consensus 757 l~~~~~~~i~p~~~~p~ll~~Ll~~L~~-~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1880)
++..++.+ -+.+...+..-+.+ ..+..+|.-|+-.+|.+|--.+.
T Consensus 807 Lt~~~~~~------s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~---------------------------- 852 (1233)
T KOG1824|consen 807 LTCACPQK------SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL---------------------------- 852 (1233)
T ss_pred HHHhcccc------chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC----------------------------
Confidence 44444422 23556666555543 33567787788888888721000
Q ss_pred CcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcch
Q 000194 836 MDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYL 915 (1880)
Q Consensus 836 ~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~ 915 (1880)
.+..+ |++++ +..++.|+- +...++..|++.+ .+--++.++|.++..+.+. |..
T Consensus 853 ------------s~~~e-~~~~i----ieaf~sp~e-dvksAAs~ALGsl-------~vgnl~~yLpfil~qi~sq-pk~ 906 (1233)
T KOG1824|consen 853 ------------SPQNE-LKDTI----IEAFNSPSE-DVKSAASYALGSL-------AVGNLPKYLPFILEQIESQ-PKR 906 (1233)
T ss_pred ------------Ccchh-hHHHH----HHHcCCChH-HHHHHHHHHhhhh-------hcCchHhHHHHHHHHHhcc-hHh
Confidence 01112 23444 455666642 3344444444433 2345677888888877654 333
Q ss_pred hHHHHHHHHHHHHHHH-HhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHh-----------------
Q 000194 916 KDYITWKLGTLVSIVR-QHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLAL----------------- 977 (1880)
Q Consensus 916 ~~~~~~~l~~lv~~~~-~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l----------------- 977 (1880)
+..++..|-.++.... ..+.||++.|..++........ +..| ..+-.|++.++-.=
T Consensus 907 QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~e--egtR----~vvAECLGkL~l~epesLlpkL~~~~~S~a~ 980 (1233)
T KOG1824|consen 907 QYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAE--EGTR----NVVAECLGKLVLIEPESLLPKLKLLLRSEAS 980 (1233)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccch--hhhH----HHHHHHhhhHHhCChHHHHHHHHHHhcCCCc
Confidence 3444444544444332 3467999999999987765433 1222 13445555443111
Q ss_pred -----------------hhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcC-
Q 000194 978 -----------------NDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKV- 1039 (1880)
Q Consensus 978 -----------------~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~l~~- 1039 (1880)
+.-+.+|+.+-+..++..++|+|. .+.--++.++.++..+=+..+..++|.+++++-.
T Consensus 981 ~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl----~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~e 1056 (1233)
T KOG1824|consen 981 NTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDL----EVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSE 1056 (1233)
T ss_pred chhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCch----hHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHh
Confidence 113556777777788888877653 3333344444444443333333444444433310
Q ss_pred --------------------CCcHHHHHHHHHHHHhhcc
Q 000194 1040 --------------------DAPVDIRRAAIETLTRLIP 1058 (1880)
Q Consensus 1040 --------------------~~~~~vr~~ai~~l~~l~~ 1058 (1880)
+...++|+.|.+++-.+..
T Consensus 1057 TkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLd 1095 (1233)
T KOG1824|consen 1057 TKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLD 1095 (1233)
T ss_pred hhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHH
Confidence 1246899999999977654
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-20 Score=220.08 Aligned_cols=723 Identities=17% Similarity=0.196 Sum_probs=445.4
Q ss_pred chhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHhhhchh----hHHHHHH--
Q 000194 167 EYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPT--LAVRERAVEALRACLRVIEKRETR----WRVQWYY-- 238 (1880)
Q Consensus 167 ~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~--~~VR~aA~~al~~~~~~i~~r~~~----~~~~~~~-- 238 (1880)
.+.|..|-..|.+++. ..+++++..+-..|.|.+ ..+|.+|.-.|+..+. .+|+. ....|+.
T Consensus 15 ~n~~~~Ae~~l~~~~~-------~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~---akd~~~k~~~~qRWl~l~ 84 (859)
T KOG1241|consen 15 QNVRKRAEKQLEQAQS-------QNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLT---AKDPERKQQYQQRWLQLP 84 (859)
T ss_pred cchHHHHHHHHHHHHh-------ccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhc---cCCHHHHHHHHHHHHcCC
Confidence 3456666667777664 356677777777777654 6789999998888653 24432 3445642
Q ss_pred -----HHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcch-hHHHHHHHHHhHhHhhhC
Q 000194 239 -----RMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRD-RLVRLSITSLLPRIAHFL 312 (1880)
Q Consensus 239 -----~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~-~~Vr~~~~~~i~~la~~~ 312 (1880)
.+-.-+...|+++. .+....|..+++.+... |.=....++++..+.+...... ..+++.++.+||.++...
T Consensus 85 ~e~reqVK~~il~tL~~~e-p~~~s~Aaq~va~IA~~--ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i 161 (859)
T KOG1241|consen 85 AEIREQVKNNILRTLGSPE-PRRPSSAAQCVAAIACI--ELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDI 161 (859)
T ss_pred HHHHHHHHHHHHHHcCCCC-CCccchHHHHHHHHHHh--hCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC
Confidence 23334455677664 34455555666666542 1112334455555555444433 359999999999999754
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCC----CCcchHHHHHHHHHhhchhhhhhh--hhHHHHHHHHhhcCCCCCCCchHHHHH
Q 000194 313 RDRFVTNYLKICMNHILTVLRIP----AERDSGFIALGEMAGALDGELFHY--LPTITSHLREAIAPRRGKPSLEALACV 386 (1880)
Q Consensus 313 ~~~f~~~yl~~~~~~Ll~~L~~~----~~r~~a~~alg~la~~v~~~~~p~--l~~i~~~l~~~l~~~~~~~~~~a~~~l 386 (1880)
..+-.......++..+..-.++. ..|-+|..||-+-.+..+..|..- .+.||+.+.++-+..+.+.+..+|.|+
T Consensus 162 ~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~Cl 241 (859)
T KOG1241|consen 162 DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCL 241 (859)
T ss_pred CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHH
Confidence 33333333456665555555443 247788888877666666555422 245788888877666555667899999
Q ss_pred HHHHHHhCCCchHHHHH-HHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 000194 387 GNIARAMGPVMEPHVRG-LLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGN 465 (1880)
Q Consensus 387 ~~la~~~g~~~~~~l~~-ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~ 465 (1880)
-+|+.-+.+.+.|||.+ ++..-+..-.|+.-..+++.+ .++.+|.+.-.|.... .|+-...+.+|
T Consensus 242 vkIm~LyY~~m~~yM~~alfaitl~amks~~deValQai-----EFWsticeEEiD~~~e--~~e~~d~~~~p------- 307 (859)
T KOG1241|consen 242 VKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAI-----EFWSTICEEEIDLAIE--YGEAVDQGLPP------- 307 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH-----HHHHHHHHHHHHHHHH--HHHHhhcCCCc-------
Confidence 99999999999999986 444333322244434445444 4555565554443211 01111101110
Q ss_pred ccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhh---ccCCChHHHHHHHHHHHHhhhccCCCcccccc
Q 000194 466 VMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLY---LDDEDKATRKDAALCCCKLVANSFSGVSFTQF 542 (1880)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~---l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~ 542 (1880)
.....|.+++. .+.|.+.+.+.+. -+++++.+-+||+ +|..++.....
T Consensus 308 --------------~~~~fa~~a~~-------~v~P~Ll~~L~kqde~~d~DdWnp~kAAg-~CL~l~A~~~~------- 358 (859)
T KOG1241|consen 308 --------------SSKYFARQALQ-------DVVPVLLELLTKQDEDDDDDDWNPAKAAG-VCLMLFAQCVG------- 358 (859)
T ss_pred --------------hhhHHHHHHHh-------HhhHHHHHHHHhCCCCcccccCcHHHHHH-HHHHHHHHHhc-------
Confidence 00111111111 1112222222221 1234567777665 56666543321
Q ss_pred CCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHH
Q 000194 543 GASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISV 622 (1880)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~ 622 (1880)
..++..|++ +++.-+..||++-|.++..+|
T Consensus 359 ------------D~Iv~~Vl~-Fiee~i~~pdwr~reaavmAF------------------------------------- 388 (859)
T KOG1241|consen 359 ------------DDIVPHVLP-FIEENIQNPDWRNREAAVMAF------------------------------------- 388 (859)
T ss_pred ------------ccchhhhHH-HHHHhcCCcchhhhhHHHHHH-------------------------------------
Confidence 012233332 233334555555555555554
Q ss_pred HHhhhc-CCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccccc--CchHHHHHHHHHHhccCCCCC
Q 000194 623 AGRLSE-KNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIR--PYIAPIHKALVARLLEGTGIN 699 (1880)
Q Consensus 623 l~~l~~-~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~--py~~~il~~ll~~l~~~~~~~ 699 (1880)
|.+-+ -+|....|...+.+..++..+. + +..-.|..++|.||.+++..+..+- .|..+++..++..+.+
T Consensus 389 -GSIl~gp~~~~Lt~iV~qalp~ii~lm~-D-~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D----- 460 (859)
T KOG1241|consen 389 -GSILEGPEPDKLTPIVIQALPSIINLMS-D-PSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND----- 460 (859)
T ss_pred -HhhhcCCchhhhhHHHhhhhHHHHHHhc-C-chhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-----
Confidence 43222 1222233444443333344333 3 4666778899999999999886654 4678899999999997
Q ss_pred CChhHHHHHHHHHHHHHHhcC---------CchhhhHHhHHHHHHHHHh--cCCchhhHHHHHHHHHHHHhhcCcccccC
Q 000194 700 ANNGIISGVLVTVGDLARVGG---------FGMRQYISELMPLIVEALL--DGAAVTKREVAVSTLGQVVQSTGYVITPY 768 (1880)
Q Consensus 700 ~~~~v~~~~~~~l~~La~~~g---------~~~~~~~~~l~p~l~~~l~--d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~ 768 (1880)
.+.+..+++.++-.|++... +...||++.++..+++.-. |.+....|.+|..+|+.++.+....
T Consensus 461 -ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~---- 535 (859)
T KOG1241|consen 461 -EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD---- 535 (859)
T ss_pred -CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH----
Confidence 67888888888888875431 2344677777777777653 3445678999999999999886542
Q ss_pred CcchHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCC
Q 000194 769 NEYPQLLGLLLKMLNGELVWSTRREVLKVLGI-MGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSF 847 (1880)
Q Consensus 769 ~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~-lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 847 (1880)
-||.+.+..+-++.. +. .++. +. ++
T Consensus 536 -vy~~v~~~~l~il~k-----l~-q~i~--~~~l~--------------------------------------------- 561 (859)
T KOG1241|consen 536 -VYPMVQKLTLVILEK-----LD-QTIS--SQILS--------------------------------------------- 561 (859)
T ss_pred -HHHHHHHHHHHHHHH-----HH-HHHH--HHhcc---------------------------------------------
Confidence 244444444433321 00 0000 00 00
Q ss_pred CCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcC-CcchhHHHHHHHHHH
Q 000194 848 ATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTC-DDYLKDYITWKLGTL 926 (1880)
Q Consensus 848 ~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~-~~~~~~~~~~~l~~l 926 (1880)
.++ . ..+.+.+...+..+..|.+.+|++..++-+++|..|++.++.. +....+.+|..++++
T Consensus 562 --~~d---r------------~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl 624 (859)
T KOG1241|consen 562 --LAD---R------------AQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTL 624 (859)
T ss_pred --Hhh---H------------HHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHH
Confidence 000 0 0011233456777888888899998899999999999999873 233788999999999
Q ss_pred HHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchh
Q 000194 927 VSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYT 1006 (1880)
Q Consensus 927 v~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~ 1006 (1880)
+..+|..|..|+|.+.+.+...+.+... .++- ..++++++.++.+++++|.||+..++..+++.|+++ ..+|.
T Consensus 625 ~~~Lg~~F~kym~~f~pyL~~gL~n~~e----~qVc-~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~--~~hR~ 697 (859)
T KOG1241|consen 625 AESLGKGFAKYMPAFKPYLLMGLSNFQE----YQVC-AAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSP--NLHRN 697 (859)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHhhcchH----HHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCc--ccccc
Confidence 9999999999999999999888854321 1111 267999999999999999999999999999999874 35788
Q ss_pred hHHHHHHHHH----HHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccccc--ccchhHhHHHHHHHhhCCC
Q 000194 1007 YVLDILHTLE----VFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQ--VTGHISSLVHHLKLVLDGK 1080 (1880)
Q Consensus 1007 ~~~~il~~l~----~~g~~~~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~~~--~~~~~~~ii~~l~~~l~~~ 1080 (1880)
++..||++|. .+|.+|+.|+..++|.+...-... ....+ ..+|+
T Consensus 698 vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~----------------~d~~~~~~~dYv-------------- 747 (859)
T KOG1241|consen 698 VKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQ----------------TDPADDSMVDYV-------------- 747 (859)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc----------------CCCCcccHHHHH--------------
Confidence 8888888885 468889999998888776432100 00001 11222
Q ss_pred CHHHHHHHHHHHHHHHHHhcc-----ccccchhHHHHHHHhC
Q 000194 1081 NDELRKDAVDALCCLAHALGE-----DFTIFIPSIHKLLLKH 1117 (1880)
Q Consensus 1081 ~~~l~~~al~~L~~l~~~~g~-----~f~~fip~i~~~l~~~ 1117 (1880)
.++|+.++++-..++.-++. -..+|+|.|...+.+-
T Consensus 748 -d~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I 788 (859)
T KOG1241|consen 748 -DELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRI 788 (859)
T ss_pred -HHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHH
Confidence 36788888888888887772 2348999999988774
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-24 Score=222.85 Aligned_cols=160 Identities=49% Similarity=0.827 Sum_probs=131.4
Q ss_pred ccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCccccccc
Q 000194 764 VITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDL 843 (1880)
Q Consensus 764 ~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 843 (1880)
|+.||.+||+|++.|+++|++++++.+|++++|++|.|||+|||++|.+....+... ..+......+......+.
T Consensus 1 Vv~PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~ 75 (160)
T PF11865_consen 1 VVDPYLDYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS-----SENSNDESTDISLPMMGI 75 (160)
T ss_pred CcchHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc-----cccccccchhhHHhhccC
Confidence 578999999999999999999999999999999999999999999986654111000 000000000110011111
Q ss_pred CCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcchhHHHHHHH
Q 000194 844 WPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKL 923 (1880)
Q Consensus 844 ~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l 923 (1880)
.++.++||+++++++|+++|+|++++++|.++++|++.||+++|.+|+||+++|+|.+++++++++++++|+++++|
T Consensus 76 ---~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL 152 (160)
T PF11865_consen 76 ---SPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQL 152 (160)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 000194 924 GTLVSIVR 931 (1880)
Q Consensus 924 ~~lv~~~~ 931 (1880)
+.++.++|
T Consensus 153 ~~lv~ivk 160 (160)
T PF11865_consen 153 ADLVSIVK 160 (160)
T ss_pred HHHHHHhC
Confidence 99998764
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.6e-18 Score=193.73 Aligned_cols=562 Identities=12% Similarity=0.137 Sum_probs=360.6
Q ss_pred HHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHH
Q 000194 485 ALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEK 564 (1880)
Q Consensus 485 Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~ 564 (1880)
++..+..++........++...+..--+.....+..++..+|+......- .+...+..+-++-.
T Consensus 117 l~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~----------------Pe~li~~sN~il~a 180 (858)
T COG5215 117 LLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEA----------------PEDLIQMSNVILFA 180 (858)
T ss_pred HHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccC----------------HHHHHHHhhHHHHH
Confidence 34444444443333344555544433333344566667777877664321 00122333333333
Q ss_pred HHHHHh-cCCChhHHHHHHHhccCC-----CCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH
Q 000194 565 LLIAAV-ADADVTVRHSIFSSLYGN-----RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL 638 (1880)
Q Consensus 565 Ll~~~~-~d~~~~vR~~~l~~l~~~-----~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l 638 (1880)
++.-+. ++++..||.+++.+|-+. ..|...-...-+++....+-+-++.+++.+|+-++.++...+-....|++
T Consensus 181 iv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ym 260 (858)
T COG5215 181 IVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYM 260 (858)
T ss_pred HHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443333 578999999999998420 01110000011334444556777899999999999999887765566777
Q ss_pred HHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhC--cccc---------c------CchHHHHHHHHHHhcc--CCCCC
Q 000194 639 RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNC--ERLI---------R------PYIAPIHKALVARLLE--GTGIN 699 (1880)
Q Consensus 639 ~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~--~~~~---------~------py~~~il~~ll~~l~~--~~~~~ 699 (1880)
.+.|..+......+ +..++..+|.+....+++.- +... + .-+..+++.++..+.. ++..+
T Consensus 261 E~aL~alt~~~mks-~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~ 339 (858)
T COG5215 261 ENALAALTGRFMKS-QNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYG 339 (858)
T ss_pred HHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 77777766666666 56677778888887776421 1111 1 1145678888887764 22223
Q ss_pred CChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcc-cccCCcchHHHHHH
Q 000194 700 ANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV-ITPYNEYPQLLGLL 778 (1880)
Q Consensus 700 ~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~-i~p~~~~p~ll~~L 778 (1880)
.+.++.-++..|+...++..|+.+.. .++..+-+.++.. ++..|++|+.++|.+...-..+ .+||. |+.++.+
T Consensus 340 DdWn~smaA~sCLqlfaq~~gd~i~~---pVl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~~lT~~V--~qalp~i 413 (858)
T COG5215 340 DDWNPSMAASSCLQLFAQLKGDKIMR---PVLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCEDCLTKIV--PQALPGI 413 (858)
T ss_pred cccchhhhHHHHHHHHHHHhhhHhHH---HHHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHHHHHhhH--HhhhHHH
Confidence 46777778888999999988875433 2555555666644 6889999999999987654443 35553 7888888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcc-----cCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCccc
Q 000194 779 LKMLNGELVWSTRREVLKVLGIMGA-----LDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDY 853 (1880)
Q Consensus 779 l~~L~~~~~~~vr~~~l~~lg~lga-----ldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 853 (1880)
.+... +..--++..+..|+|.+.. ++|-. +
T Consensus 414 ~n~m~-D~~l~vk~ttAwc~g~iad~va~~i~p~~--------------------------------------------H 448 (858)
T COG5215 414 ENEMS-DSCLWVKSTTAWCFGAIADHVAMIISPCG--------------------------------------------H 448 (858)
T ss_pred HHhcc-cceeehhhHHHHHHHHHHHHHHHhcCccc--------------------------------------------c
Confidence 88776 4455677888899888752 22211 1
Q ss_pred chHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCC-------CCCCCcchhhHHHHHHHhc--CCcchhHHHHHHHH
Q 000194 854 YSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGL-------GCVPYLPKVLPDLFHTVRT--CDDYLKDYITWKLG 924 (1880)
Q Consensus 854 ~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~-------~~~~~l~~iip~ll~~l~~--~~~~~~~~~~~~l~ 924 (1880)
.+. .+.+++..|.|....+ ..+.-+.+.++.++.+ ...+|.+.|+..++..-.. .+.+.|...|..||
T Consensus 449 l~~-~vsa~liGl~D~p~~~--~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLg 525 (858)
T COG5215 449 LVL-EVSASLIGLMDCPFRS--INCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALG 525 (858)
T ss_pred ccH-HHHHHHhhhhccchHH--hhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 112 2233334455543221 1334444444444322 1234555555555554332 23458999999999
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHhhcCC----C----C-CcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHh
Q 000194 925 TLVSIVRQHIRKYLQELFSLISELWSSF----S----L-PATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQV 995 (1880)
Q Consensus 925 ~lv~~~~~~i~~y~~~i~~~i~~~~~~~----~----~-~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~ 995 (1880)
+++....+.+.+.+-.+.+.+.+.+... . . ....-+.++..++.+++++.+..+.++.+--.+++.+++++
T Consensus 526 tli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~ 605 (858)
T COG5215 526 TLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRI 605 (858)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 9999877766655554444444333221 0 0 00011234557889999999999999999999999999999
Q ss_pred cccccccCchhhHHHHHHHHH-HHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc--ccccchhHhHHHH
Q 000194 996 LSDAERCNDYTYVLDILHTLE-VFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR--VQVTGHISSLVHH 1072 (1880)
Q Consensus 996 l~~~~~~~~~~~~~~il~~l~-~~g~~~~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~--~~~~~~~~~ii~~ 1072 (1880)
|+..+.+.-..-+.-.++++. ++++.|+.|+..++|.+.+.+.. ....+-..|+..+|+|++. .+|.+|...++..
T Consensus 606 les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~-~d~~v~~~avglvgdlantl~~df~~y~d~~ms~ 684 (858)
T COG5215 606 LESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNC-TDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSS 684 (858)
T ss_pred HhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcc-hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 976422211111223334443 36778999999999999999832 3556778999999999997 6799999999999
Q ss_pred HHHhhCCCC--HHHHHHHHHHHHHHHHHhccccccchhHHHHHHHhCC
Q 000194 1073 LKLVLDGKN--DELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHR 1118 (1880)
Q Consensus 1073 l~~~l~~~~--~~l~~~al~~L~~l~~~~g~~f~~fip~i~~~l~~~~ 1118 (1880)
|...|+++. .++|++++.+++.++..+|.+|.+|+..|.-.+.+..
T Consensus 685 LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas 732 (858)
T COG5215 685 LVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQAS 732 (858)
T ss_pred HHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 999998764 6899999999999999999999999999999888753
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-13 Score=159.32 Aligned_cols=725 Identities=17% Similarity=0.185 Sum_probs=415.1
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchh
Q 000194 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNV 190 (1880)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~ 190 (1880)
|...|..++.+.-|.+-+..-.++++++.-.-+...-.||...+-.+-.++- +.+--+|..+-.++.-|+..|+-
T Consensus 400 fnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkILvVieplli-ded~yar~egreIisnLakaaGl---- 474 (1172)
T KOG0213|consen 400 FNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLI-DEDYYARVEGREIISNLAKAAGL---- 474 (1172)
T ss_pred HHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeEEEeeccee-cchHHHhhchHHHHHHHHHHhhh----
Confidence 4455555565544555566677778777664222222233222211112221 23335667777788888776552
Q ss_pred chHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc
Q 000194 191 HVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN 270 (1880)
Q Consensus 191 ~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~ 270 (1880)
..++..+-.-+-..++.||..++.|++.+.+.+. ++.++|-+....++..+|..||.++.+...+...
T Consensus 475 --a~mistmrpDidn~deYVRnttarafavvasalg----------ip~llpfLkavc~SkkSwqaRhTgIkivqqIail 542 (1172)
T KOG0213|consen 475 --ATMISTMRPDIDNKDEYVRNTTARAFAVVASALG----------IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAIL 542 (1172)
T ss_pred --HHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhC----------cHHHHHHHHHHhccccchhhhchhhHHHHHHHHH
Confidence 2333334444456678999999999988766544 2333333333334554699999999999999887
Q ss_pred chhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCc--chHHHHHHHH
Q 000194 271 TGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAER--DSGFIALGEM 348 (1880)
Q Consensus 271 ~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r--~~a~~alg~l 348 (1880)
.|-...||+..+++.+-..+.+++..||-.+..++..+|+.+..-=.+ .++.++-.|-.-++...-+ .+-+.|+|-+
T Consensus 543 ~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie-~fDsVlkpLwkgir~hrgk~laafLkAigyl 621 (1172)
T KOG0213|consen 543 SGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIE-QFDSVLKPLWKGIRQHRGKELAAFLKAIGYL 621 (1172)
T ss_pred hcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHHccChHHHHHHHHHhhc
Confidence 777889999999998888889999999999999999999765431111 2355554444444322222 2344555655
Q ss_pred Hhhchhhhhh-hhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHH-HHHHHHHhcCCCHHHHHHHHHHHH
Q 000194 349 AGALDGELFH-YLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVR-GLLDIMFSAGLSTTLVDALEQITV 426 (1880)
Q Consensus 349 a~~v~~~~~p-~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~-~ll~~l~~~~ls~~l~~~l~~i~~ 426 (1880)
+--...+-.. |-..+|-.+...+..++......++..+..+|...|-+ ..|+. +++|..|.+--...+ ++
T Consensus 622 iplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~-~~y~r~dilp~ff~~fw~rrm--A~----- 693 (1172)
T KOG0213|consen 622 IPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE-PAYIRFDILPEFFFSFWGRRM--AL----- 693 (1172)
T ss_pred cccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC-HHHHhhhhhHHHHhhhhhhhh--hc-----
Confidence 5444433332 33456766666554433222234667777777766642 22444 566666643100000 00
Q ss_pred hCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHH
Q 000194 427 SIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDS 506 (1880)
Q Consensus 427 ~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~ 506 (1880)
....+.+ ..+. ++..| +-+|+ .+.+..+
T Consensus 694 ---------------------drr~ykq---------------------lv~t-tv~ia-~KvG~--------~~~v~R~ 721 (1172)
T KOG0213|consen 694 ---------------------DRRNYKQ---------------------LVDT-TVEIA-AKVGS--------DPIVSRV 721 (1172)
T ss_pred ---------------------cccchhh---------------------HHHH-HHHHH-HHhCc--------hHHHHHH
Confidence 0000000 0000 01111 11221 1344455
Q ss_pred HhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCC--hhHHH----H
Q 000194 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADAD--VTVRH----S 580 (1880)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~--~~vR~----~ 580 (1880)
+..|- ++.+..|+.++.+..+++...... .+ -.++...++..++.+ +.+.+ ..|.. .
T Consensus 722 v~~lk-de~e~yrkm~~etv~ri~~~lg~~----di-----------derleE~lidgil~A-fqeqtt~d~vml~gfg~ 784 (1172)
T KOG0213|consen 722 VLDLK-DEPEQYRKMVAETVSRIVGRLGAA----DI-----------DERLEERLIDGILYA-FQEQTTEDSVMLLGFGT 784 (1172)
T ss_pred hhhhc-cccHHHHHHHHHHHHHHHhccccc----cc-----------cHHHHHHHHHHHHHH-HHhcccchhhhhhhHHH
Confidence 55543 456778888888888877543210 01 123333344444433 33322 22222 3
Q ss_pred HHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccc----ccHHHHHHHHHHHHHHhcCCCCh
Q 000194 581 IFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY----VLPALRRHLIQLLTYLEQSSADN 656 (1880)
Q Consensus 581 ~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~----v~p~l~~~l~~~l~~l~~~~~~~ 656 (1880)
+..+|. .+.-+|+ +.++..+...|+.+++.||+.|.+++++++...... .+.++.-+|.+.+ .. ..+
T Consensus 785 V~~~lg--~r~kpyl--pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEyl----ge-eyp 855 (1172)
T KOG0213|consen 785 VVNALG--GRVKPYL--PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYL----GE-EYP 855 (1172)
T ss_pred HHHHHh--hccccch--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhc----Cc-ccH
Confidence 455554 3444566 456888889999999999999999999988754322 2223332222222 22 344
Q ss_pred HhHHHHHHHHHHHHHhCc-ccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchh--hhHHhHHHH
Q 000194 657 KCREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMR--QYISELMPL 733 (1880)
Q Consensus 657 ~~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~--~~~~~l~p~ 733 (1880)
+.-...+.++..|....+ ....|=+..+++.+.|.|++. ...|..+.+.-+|.++..+++.+. .++. +-=.
T Consensus 856 EvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknr-----heKVqen~IdLvg~IadrgpE~v~aREWMR-Icfe 929 (1172)
T KOG0213|consen 856 EVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-----HEKVQENCIDLVGTIADRGPEYVSAREWMR-ICFE 929 (1172)
T ss_pred HHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhh-----HHHHHHHHHHHHHHHHhcCcccCCHHHHHH-HHHH
Confidence 444444444555554433 224555788999999999975 778888888899999988776432 2222 2222
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhcc
Q 000194 734 IVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQ 813 (1880)
Q Consensus 734 l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~ 813 (1880)
+++.|.. +..+.|.+|..+||-+++..|.. ++|..|++-|+..+ ...|.-+--+|+++|
T Consensus 930 LlelLka-hkK~iRRaa~nTfG~IakaIGPq--------dVLatLlnnLkvqe-Rq~RvcTtvaIaIVa----------- 988 (1172)
T KOG0213|consen 930 LLELLKA-HKKEIRRAAVNTFGYIAKAIGPQ--------DVLATLLNNLKVQE-RQNRVCTTVAIAIVA----------- 988 (1172)
T ss_pred HHHHHHH-HHHHHHHHHHhhhhHHHHhcCHH--------HHHHHHHhcchHHH-HHhchhhhhhhhhhh-----------
Confidence 3344443 24568899999999999887752 68889998887542 223322211222221
Q ss_pred ccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCC
Q 000194 814 QLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGC 893 (1880)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~ 893 (1880)
+-.-+-.|+++||.--+-|.. .++..+..|+..+|+..|...
T Consensus 989 -------------------------------------E~c~pFtVLPalmneYrtPe~-nVQnGVLkalsf~Feyigems 1030 (1172)
T KOG0213|consen 989 -------------------------------------ETCGPFTVLPALMNEYRTPEA-NVQNGVLKALSFMFEYIGEMS 1030 (1172)
T ss_pred -------------------------------------hhcCchhhhHHHHhhccCchh-HHHHhHHHHHHHHHHHHHHHh
Confidence 001123577888877777765 456799999999999999888
Q ss_pred CCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHH
Q 000194 894 VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQL 973 (1880)
Q Consensus 894 ~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l 973 (1880)
..|+-.+.|.+-..+.+.+...|......+.-++-.+ .---..+.++.++.-.|.+.-.+... ....+..+++.+
T Consensus 1031 kdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~--~g~g~eda~iHLLN~iWpNIle~sPh---viqa~~e~~eg~ 1105 (1172)
T KOG0213|consen 1031 KDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGV--PGTGCEDALIHLLNLIWPNILETSPH---VIQAFDEAMEGL 1105 (1172)
T ss_pred hhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCC--CCcCcHHHHHHHHHHhhhhhcCCChH---HHHHHHHHHHHH
Confidence 8999999999999998877766766554332222110 00112455666667677764322111 122567788888
Q ss_pred HHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHH
Q 000194 974 CLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLE 1016 (1880)
Q Consensus 974 ~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~ 1016 (1880)
..++|.. .++..+++-|-++.+. -|....++...+.
T Consensus 1106 r~~Lg~~------~~~~Y~~QGLFHPark-VR~~yw~vyn~my 1141 (1172)
T KOG0213|consen 1106 RVALGPQ------AMLKYCLQGLFHPARK-VRKRYWTVYNSMY 1141 (1172)
T ss_pred HHHhchH------HHHHHHHHhccCcHHH-HHHHHHHHHHhHh
Confidence 8888764 2455566666554322 2334445554443
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-12 Score=154.94 Aligned_cols=549 Identities=16% Similarity=0.190 Sum_probs=337.7
Q ss_pred CChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhh----cCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHH
Q 000194 123 RDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWL----RGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDA 198 (1880)
Q Consensus 123 ~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l----~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~ 198 (1880)
.|+-|+..++.+++-.+.+-| ++.++.+| ++.++|..||.++.+..++|.-.+-...||+..++..
T Consensus 488 ~deYVRnttarafavvasalg----------ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~i 557 (1172)
T KOG0213|consen 488 KDEYVRNTTARAFAVVASALG----------IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKI 557 (1172)
T ss_pred ccHHHHHHHHHHHHHHHHHhC----------cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHH
Confidence 467899999999998888744 22233333 2566899999999999999999888889999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHH
Q 000194 199 IWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSR 278 (1880)
Q Consensus 199 i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~ 278 (1880)
|-.+|.|.+..||-.++.|++.+++... .....-+..++.-+-.|+.++.. ..-.+-+.|+|.|+--+...-..|
T Consensus 558 i~~gl~De~qkVR~itAlalsalaeaa~----Pygie~fDsVlkpLwkgir~hrg-k~laafLkAigyliplmd~eya~y 632 (1172)
T KOG0213|consen 558 IEHGLKDEQQKVRTITALALSALAEAAT----PYGIEQFDSVLKPLWKGIRQHRG-KELAAFLKAIGYLIPLMDAEYASY 632 (1172)
T ss_pred HHHhhcccchhhhhHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHHHccC-hHHHHHHHHHhhccccccHHHHHH
Confidence 9999999999999999999998876533 34556677777777777766532 234444557777765443333333
Q ss_pred H-HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCC---CCc---chHHHHHHHHHh
Q 000194 279 Y-REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIP---AER---DSGFIALGEMAG 350 (1880)
Q Consensus 279 ~-~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~---~~r---~~a~~alg~la~ 350 (1880)
| .+++-.+.+-+++++...++.++.++.+.|.-.+.+ +.|+ .+++|.++.....- -+| ..-..+-..+|.
T Consensus 633 yTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~--~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~ 710 (1172)
T KOG0213|consen 633 YTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE--PAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAA 710 (1172)
T ss_pred hHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC--HHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHH
Confidence 3 356667777788999999999999999988755432 2244 46667666554321 122 133445556788
Q ss_pred hchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCC-CchHHHH-HHHHHHHhcCCCHHHHHHHHHHHHhC
Q 000194 351 ALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGP-VMEPHVR-GLLDIMFSAGLSTTLVDALEQITVSI 428 (1880)
Q Consensus 351 ~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~-~~~~~l~-~ll~~l~~~~ls~~l~~~l~~i~~~~ 428 (1880)
.+|. .+++..+...+.+....-+.-+.+.+..+...+|. +|..-+. .+++.
T Consensus 711 KvG~------~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidg--------------------- 763 (1172)
T KOG0213|consen 711 KVGS------DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDG--------------------- 763 (1172)
T ss_pred HhCc------hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHH---------------------
Confidence 8886 23444444444222111112245555555555554 3332221 22222
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc--ccCC--CcchhhHH
Q 000194 429 PSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF--NFKG--HDLLEFAR 504 (1880)
Q Consensus 429 p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~--~~~~--~~l~~~v~ 504 (1880)
|...+..+. . ++ ..-|..+|.+ .|.+ ....|.+.
T Consensus 764 --------------il~Afqeqt------------------------t-~d---~vml~gfg~V~~~lg~r~kpylpqi~ 801 (1172)
T KOG0213|consen 764 --------------ILYAFQEQT------------------------T-ED---SVMLLGFGTVVNALGGRVKPYLPQIC 801 (1172)
T ss_pred --------------HHHHHHhcc------------------------c-ch---hhhhhhHHHHHHHHhhccccchHHHH
Confidence 111110000 0 00 0011111111 1211 12234455
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHh
Q 000194 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSS 584 (1880)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1880)
..++..+.+..+.||..|+..|+.+..-- ..| . + ......++-| +--.+.+..|+|--+++.+
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vl-ktc-----~-----e--e~~m~~lGvv----LyEylgeeypEvLgsILgA 864 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVL-KTC-----G-----E--EKLMGHLGVV----LYEYLGEEYPEVLGSILGA 864 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHH-Hhc-----c-----H--HHHHHHhhHH----HHHhcCcccHHHHHHHHHH
Confidence 56678899999999999999888775311 111 0 0 0011111211 1123456677777777666
Q ss_pred ccC-------CCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHH-HHHHHHHHHHHHhcCCCCh
Q 000194 585 LYG-------NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA-LRRHLIQLLTYLEQSSADN 656 (1880)
Q Consensus 585 l~~-------~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~-l~~~l~~~l~~l~~~~~~~ 656 (1880)
+.. ...+-| -.++++.|.-.|...+..|+..+++++|+++...|.++.+. ..++...++..|... ..
T Consensus 865 ikaI~nvigm~km~pP---i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah--kK 939 (1172)
T KOG0213|consen 865 IKAIVNVIGMTKMTPP---IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH--KK 939 (1172)
T ss_pred HHHHHHhccccccCCC---hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH--HH
Confidence 631 111111 12578888888889999999999999999999999887642 233455566656543 45
Q ss_pred HhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHH
Q 000194 657 KCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE 736 (1880)
Q Consensus 657 ~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~ 736 (1880)
..|..|...+|.|++..++ ..++..|+..|+-. +...+.+.-.+|+..++.+|. -.++|.++.
T Consensus 940 ~iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvq-----eRq~RvcTtvaIaIVaE~c~p------FtVLPalmn 1002 (1172)
T KOG0213|consen 940 EIRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQ-----ERQNRVCTTVAIAIVAETCGP------FTVLPALMN 1002 (1172)
T ss_pred HHHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHH-----HHHhchhhhhhhhhhhhhcCc------hhhhHHHHh
Confidence 6788999999999998762 56777888777643 223333334456667776664 246777776
Q ss_pred HHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000194 737 ALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGI 800 (1880)
Q Consensus 737 ~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~ 800 (1880)
--.-+ +..+..-.+++|+-+.+++|..-.-|.. .+.+.|-..|.+ .+..-|.-+..++.-
T Consensus 1003 eYrtP-e~nVQnGVLkalsf~FeyigemskdYiy--av~PlleDAlmD-rD~vhRqta~~~I~H 1062 (1172)
T KOG0213|consen 1003 EYRTP-EANVQNGVLKALSFMFEYIGEMSKDYIY--AVTPLLEDALMD-RDLVHRQTAMNVIKH 1062 (1172)
T ss_pred hccCc-hhHHHHhHHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhcc-ccHHHHHHHHHHHHH
Confidence 55433 3457777899999999999875444432 456666666643 355556666555543
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.2e-12 Score=171.76 Aligned_cols=719 Identities=14% Similarity=0.092 Sum_probs=380.2
Q ss_pred CCCCHHHHHHHHHHHcCC--C-CchhhHHHHHHHHHHHHHhhhChHHHHHHHHH---HHHHHHhhhcCCChhhhhhHHHH
Q 000194 19 GGGSLDALNRILADLCTH--G-NPKEGASLALRKHIEEQARDLGGEAFSRFMDQ---LYDRISGLLESNDAAENLGALRA 92 (1880)
Q Consensus 19 ~~~~~~~~~~l~~~l~s~--~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~---l~~~i~~l~~s~~~~~r~~~i~a 92 (1880)
..++...+..++++|++. + ++++.|+.+|+.+.+.. .+ .++++-+ ....+..++++.+...|.-++.+
T Consensus 8 ~~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~-----~e-nR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaa 81 (2102)
T PLN03200 8 PDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTR-----EE-ARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAV 81 (2102)
T ss_pred ccchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcC-----hH-HHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 356678899999999976 3 34445888888887322 22 3444422 45666677888888788777777
Q ss_pred HhHhhccccCcchhHHH--HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCC--Cchh-HH-HHHHHHHHhhhcCC-C
Q 000194 93 IDELIDVALGENASKVS--KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGA--MTAD-EV-EFQVKMALDWLRGD-R 165 (1880)
Q Consensus 93 i~~Li~~~~~~~~~~~~--~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~--~~~~-~v-~~~~~~~~~~l~~~-~ 165 (1880)
+..|-..+ +...++. -..+.|..++. ..+.+..+.|+.+|..|+..+.. .... .+ ...++.+++.+++. +
T Consensus 82 L~nLS~~e--~nk~~Iv~~GaIppLV~LL~-sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk 158 (2102)
T PLN03200 82 LGVLCKEE--DLRVKVLLGGCIPPLLSLLK-SGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNK 158 (2102)
T ss_pred HHHHhcCH--HHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCch
Confidence 77774332 2222222 22345666665 45899999999999999876411 1101 11 23455555556532 1
Q ss_pred cc-hhHHHHHHHHHHHHhhcCccchhch-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHH-HHHHH
Q 000194 166 VE-YRRFAAVLILKEMAENASTVFNVHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY-YRMFE 242 (1880)
Q Consensus 166 ~~-~~R~aA~~~l~~la~~~p~~l~~~l-~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~-~~~l~ 242 (1880)
.+ ..+..|+.+|..|+.+....-..-+ ...+|.+...|.++++.++..|+.++...+.. .+. .+.... ...+|
T Consensus 159 ~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass---~ee-~~~aVIeaGaVP 234 (2102)
T PLN03200 159 QDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMA---FES-SISKVLDAGAVK 234 (2102)
T ss_pred hhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---ChH-HHHHHHHCCCHH
Confidence 11 2344567788888876544311111 24778888899999999999998877654321 111 111111 23455
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcc---------hhHHHHHHHHHhHhHhhhC
Q 000194 243 ATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHR---------DRLVRLSITSLLPRIAHFL 312 (1880)
Q Consensus 243 ~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~---------~~~Vr~~~~~~i~~la~~~ 312 (1880)
.+..-+.+.++..++..|+.+|+.|...+.++-..-.+ ..++.++..+..+ +...++.++++++.+|...
T Consensus 235 ~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~ 314 (2102)
T PLN03200 235 QLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM 314 (2102)
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc
Confidence 56665654333467888888888887643321111000 1122333333222 2334555666666655321
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHH
Q 000194 313 RDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1880)
Q Consensus 313 ~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~ 392 (1880)
..++++|...+...++......++|.++..+.. ++.-.+.++ .+. ...+..++..+++.
T Consensus 315 ---------~~ll~~L~~ll~s~rd~~~~ada~gALayll~l-----~d~~~~~~~-~i~------~~~v~~~LV~Llr~ 373 (2102)
T PLN03200 315 ---------SALILYLGELSESPRSPAPIADTLGALAYALMV-----FDSSAESTR-AFD------PTVIEQILVKLLKP 373 (2102)
T ss_pred ---------hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh-----cCCchhhhh-hcc------ccccHHHHHHHhCC
Confidence 234444444444333322222222222211100 000000000 000 00111122222211
Q ss_pred hCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCcc
Q 000194 393 MGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQ 472 (1880)
Q Consensus 393 ~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1880)
++-.+....+.+.|-..--++.+...+.+
T Consensus 374 --k~p~~vqe~V~eALasl~gN~~l~~~L~~------------------------------------------------- 402 (2102)
T PLN03200 374 --RDTKLVQERIIEALASLYGNAYLSRKLNH------------------------------------------------- 402 (2102)
T ss_pred --CCCchhHHHHHHHHHHhcCChHHHHHHHh-------------------------------------------------
Confidence 11000001111111000000000000000
Q ss_pred ccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCcccccccc
Q 000194 473 VSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGG 552 (1880)
Q Consensus 473 ~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 552 (1880)
.=....++.++...+.+++..++.++..+.....+.
T Consensus 403 ----------------------------~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~---------------- 438 (2102)
T PLN03200 403 ----------------------------AEAKKVLVGLITMATADVQEELIRALSSLCCGKGGL---------------- 438 (2102)
T ss_pred ----------------------------ccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHH----------------
Confidence 000112334555556667766666655544221100
Q ss_pred chhHH-HHHHHHHHHHHHhcCCChhHHHHHHHhcc---CCCCc-chhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhh
Q 000194 553 KRRRL-IEELVEKLLIAAVADADVTVRHSIFSSLY---GNRGF-DDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLS 627 (1880)
Q Consensus 553 ~~~~~-~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~---~~~~f-d~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~ 627 (1880)
...+ -...++.|+.. +..++..++..++..++ ..... -..+.....++.|..+|..++..+|+.|+++|+.++
T Consensus 439 -~~aIi~~ggIp~LV~L-L~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa 516 (2102)
T PLN03200 439 -WEALGGREGVQLLISL-LGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLC 516 (2102)
T ss_pred -HHHHHHcCcHHHHHHH-HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 0000 01123333332 34456677776665552 11100 011223456889999999999999999999999999
Q ss_pred cCCcccccHHHH--HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHH
Q 000194 628 EKNPAYVLPALR--RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGII 705 (1880)
Q Consensus 628 ~~~p~~v~p~l~--~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~ 705 (1880)
...+ .+...+. ..+..++.-+ .+ ++.+.++.|++.|..++..... ..++.++..+..+ ++.+.
T Consensus 517 ~~~~-qir~iV~~aGAIppLV~LL-~s-gd~~~q~~Aa~AL~nLi~~~d~-------~~I~~Lv~LLlsd-----d~~~~ 581 (2102)
T PLN03200 517 CHSE-DIRACVESAGAVPALLWLL-KN-GGPKGQEIAAKTLTKLVRTADA-------ATISQLTALLLGD-----LPESK 581 (2102)
T ss_pred CCcH-HHHHHHHHCCCHHHHHHHH-hC-CCHHHHHHHHHHHHHHHhccch-------hHHHHHHHHhcCC-----ChhHH
Confidence 8532 1111111 1122233333 34 5788999999999999876432 2234455555543 56777
Q ss_pred HHHHHHHHHHHHhcCCc-hhhh---HHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHH
Q 000194 706 SGVLVTVGDLARVGGFG-MRQY---ISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKM 781 (1880)
Q Consensus 706 ~~~~~~l~~La~~~g~~-~~~~---~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~ 781 (1880)
..++.++|.+....... +..- ....+|.+.+.+..+ +...++.|+++|+.++............ -..++-|+..
T Consensus 582 ~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~avv~-agaIpPLV~L 659 (2102)
T PLN03200 582 VHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESLAT-DEIINPCIKL 659 (2102)
T ss_pred HHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHH
Confidence 78888888876644331 1111 135788999988866 5678888999999998755332111111 1345566666
Q ss_pred hcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccc-hHHHHH
Q 000194 782 LNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYY-STVAIN 860 (1880)
Q Consensus 782 L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~vi~ 860 (1880)
|++. +.++++++..+|+.+..- .... ...++ ..-+++
T Consensus 660 Lss~-~~~v~keAA~AL~nL~~~--~~~~---------------------------------------q~~~~v~~GaV~ 697 (2102)
T PLN03200 660 LTNN-TEAVATQSARALAALSRS--IKEN---------------------------------------RKVSYAAEDAIK 697 (2102)
T ss_pred HhcC-ChHHHHHHHHHHHHHHhC--CCHH---------------------------------------HHHHHHHcCCHH
Confidence 6554 567899999998876420 0000 00011 123567
Q ss_pred HHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCC-cchhhHHHHHHHhcCCcchhHHHHHHHHHHHHH
Q 000194 861 SLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY-LPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSI 929 (1880)
Q Consensus 861 ~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~-l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~ 929 (1880)
.|++.|++++. .....+..++..++..-... ... -...+|.+...++..++..|+.+...|..+...
T Consensus 698 pL~~LL~~~d~-~v~e~Al~ALanLl~~~e~~-~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 698 PLIKLAKSSSI-EVAEQAVCALANLLSDPEVA-AEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKH 765 (2102)
T ss_pred HHHHHHhCCCh-HHHHHHHHHHHHHHcCchHH-HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhC
Confidence 78899988764 44567888888888754222 111 146689999999999999999999888877753
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.9e-12 Score=171.95 Aligned_cols=748 Identities=16% Similarity=0.158 Sum_probs=403.6
Q ss_pred ChHHHHHHHHHHHHHhhhCCCCchhHH---HHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC--ccchhchHHHHHH
Q 000194 124 DREILVLASKVLGHLARAGGAMTADEV---EFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS--TVFNVHVAEFVDA 198 (1880)
Q Consensus 124 d~~v~~~aa~~l~~L~~~~g~~~~~~v---~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p--~~l~~~l~~i~~~ 198 (1880)
..+..+.|...+..|++.+... -.++ ...++.++..|..+ +...|.-|+.++..++.... ..+. ....+|.
T Consensus 28 s~~~~~~Al~~Lr~Lak~~~en-R~~Ia~~aGaIP~LV~lL~sg-~~~vk~nAaaaL~nLS~~e~nk~~Iv--~~GaIpp 103 (2102)
T PLN03200 28 SPQEKELTTARLLELAKTREEA-RKAIGSHSQAMPLLVSLLRSG-TLGAKVNAAAVLGVLCKEEDLRVKVL--LGGCIPP 103 (2102)
T ss_pred CHHHHHHHHHHHHHHHhcChHH-HHHHHHccCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCHHHHHHHH--HcCChHH
Confidence 3555666666666666643111 1111 11355555566543 34456666677777876521 1111 2567777
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHH--HHHHHHHHhhccCCCChh--HHHHHHHHHHHHHHcchhh
Q 000194 199 IWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY--YRMFEATQDGLGRNAPVH--SIHGSLLAVGELLRNTGEF 274 (1880)
Q Consensus 199 i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~--~~~l~~~~~~l~~~~~~~--~~~~al~~l~~ll~~~~~~ 274 (1880)
++..|++.++..|+.|+.||..+...-. .+. .+.... ...+|.+..-+.+.+..+ .+..++.+|..|....+.+
T Consensus 104 LV~LL~sGs~eaKe~AA~AL~sLS~~~~-~D~-~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~ 181 (2102)
T PLN03200 104 LLSLLKSGSAEAQKAAAEAIYAVSSGGL-SDH-VGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGF 181 (2102)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHcCcc-hhh-hhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccch
Confidence 8888888899999999999987654210 010 111111 223444444444432111 2344456777777654433
Q ss_pred hHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCCC---CcchHHHHHHHHH
Q 000194 275 MMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIPA---ERDSGFIALGEMA 349 (1880)
Q Consensus 275 ~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~---~r~~a~~alg~la 349 (1880)
-..-.+ ..++.++..+++.++.+|..++.++..++...++. .+.-+ ...+|.|...|++.. .|..|..+|++|+
T Consensus 182 ~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~-~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLA 260 (2102)
T PLN03200 182 WSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESS-ISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALS 260 (2102)
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHH-HHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHh
Confidence 222112 25667778888899999999999998888664431 11112 356888888886532 4788999999998
Q ss_pred hhchhhhhhhh--hHHHHHHHHhhcCCCCC---------CCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHH
Q 000194 350 GALDGELFHYL--PTITSHLREAIAPRRGK---------PSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLV 418 (1880)
Q Consensus 350 ~~v~~~~~p~l--~~i~~~l~~~l~~~~~~---------~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~l~ 418 (1880)
....+ ....+ ...++.+.+.+...... ....+.-+++.|+... +.+.|++..++.. +.....+.
T Consensus 261 s~s~e-~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~-~~ll~~L~~ll~s---~rd~~~~a 335 (2102)
T PLN03200 261 SQSKE-AKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM-SALILYLGELSES---PRSPAPIA 335 (2102)
T ss_pred cCCHH-HHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc-hhhHHHHHHhhcc---cchHHHHH
Confidence 64322 11111 11233344444221111 1245666777766432 1233333322210 00000000
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCc
Q 000194 419 DALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHD 498 (1880)
Q Consensus 419 ~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~ 498 (1880)
++...++ .++.. +.+. +. ...+ +...
T Consensus 336 da~gALa------------yll~l----~d~~---------------------------~~--~~~~--------i~~~- 361 (2102)
T PLN03200 336 DTLGALA------------YALMV----FDSS---------------------------AE--STRA--------FDPT- 361 (2102)
T ss_pred HHHhhHH------------HHHHh----cCCc---------------------------hh--hhhh--------cccc-
Confidence 1000000 00000 0000 00 0000 0000
Q ss_pred chhhHHHHHhhhccCCChHH-HHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhH
Q 000194 499 LLEFARDSVVLYLDDEDKAT-RKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTV 577 (1880)
Q Consensus 499 l~~~v~~~~~~~l~~~~~~V-R~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~v 577 (1880)
-+...+..++.+.++.+ ...++.++..++.+ +..
T Consensus 362 ---~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN------------------------------------------~~l 396 (2102)
T PLN03200 362 ---VIEQILVKLLKPRDTKLVQERIIEALASLYGN------------------------------------------AYL 396 (2102)
T ss_pred ---ccHHHHHHHhCCCCCchhHHHHHHHHHHhcCC------------------------------------------hHH
Confidence 01112223333332221 21122222221110 000
Q ss_pred HHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChH
Q 000194 578 RHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNK 657 (1880)
Q Consensus 578 R~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~ 657 (1880)
-..+...+.++.|+..+.-.+.++|..++..|..++..++....-....-..+.|-.+..+ ++..
T Consensus 397 --------------~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s-~s~~ 461 (2102)
T PLN03200 397 --------------SRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL-SSEQ 461 (2102)
T ss_pred --------------HHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC-CCHH
Confidence 0111122446667777777778899999999998887765432211211112223333333 4677
Q ss_pred hHHHHHHHHHHHHHhCcccccCch-HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHH--hHHHHH
Q 000194 658 CREESAKLLGCLIRNCERLIRPYI-APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS--ELMPLI 734 (1880)
Q Consensus 658 ~r~~a~~~L~~l~~~~~~~~~py~-~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~--~l~p~l 734 (1880)
.++.|++.|+.++....+.....+ ...++.|++.++.+ +..++..++.+++.++.. .++....+. ..+|.+
T Consensus 462 iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-----~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppL 535 (2102)
T PLN03200 462 QQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-----SQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPAL 535 (2102)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHH
Confidence 888999999999864432221111 13566777777754 678999999999998863 334455452 578999
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccc
Q 000194 735 VEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ 814 (1880)
Q Consensus 735 ~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~ 814 (1880)
++.|.+. +...++.|+++|..++..... ..++.+..+|..+ ++.++..+++++|.+..+-.......
T Consensus 536 V~LL~sg-d~~~q~~Aa~AL~nLi~~~d~---------~~I~~Lv~LLlsd-d~~~~~~aL~vLgnIlsl~~~~d~~~-- 602 (2102)
T PLN03200 536 LWLLKNG-GPKGQEIAAKTLTKLVRTADA---------ATISQLTALLLGD-LPESKVHVLDVLGHVLSVASLEDLVR-- 602 (2102)
T ss_pred HHHHhCC-CHHHHHHHHHHHHHHHhccch---------hHHHHHHHHhcCC-ChhHHHHHHHHHHHHHhhcchhHHHH--
Confidence 9999876 577889999999999765322 2345566666554 56788888888887743211110000
Q ss_pred cCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCC-
Q 000194 815 LSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGC- 893 (1880)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~- 893 (1880)
.. .. ..-.++.|..+|+.++. ..+..++.++..++..-...+
T Consensus 603 --------------------------~g-------~~---~~ggL~~Lv~LL~sgs~-~ikk~Aa~iLsnL~a~~~d~~~ 645 (2102)
T PLN03200 603 --------------------------EG-------SA---ANDALRTLIQLLSSSKE-ETQEKAASVLADIFSSRQDLCE 645 (2102)
T ss_pred --------------------------Hh-------hh---ccccHHHHHHHHcCCCH-HHHHHHHHHHHHHhcCChHHHH
Confidence 00 00 01246778888887764 455677788888876322211
Q ss_pred CCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHH
Q 000194 894 VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQL 973 (1880)
Q Consensus 894 ~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l 973 (1880)
.--....+|.++..++..+...+....+.|+.+.....+.=+ ..+++
T Consensus 646 avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~-------------------------------~~~v~-- 692 (2102)
T PLN03200 646 SLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRK-------------------------------VSYAA-- 692 (2102)
T ss_pred HHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHH-------------------------------HHHHH--
Confidence 122357788888888888777777777777766642211100 00000
Q ss_pred HHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHH---hcchhhhh-hhhHHHHHHhhcCCCcHHHHHHH
Q 000194 974 CLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVF---GGTLDEHM-HLLLPALIRLFKVDAPVDIRRAA 1049 (1880)
Q Consensus 974 ~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~---g~~~~~~~-~~ilp~l~~~l~~~~~~~vr~~a 1049 (1880)
...+|++++.|++.+ ......++.++..+ ++...+.. .-.+|++++++..+ +...|+.|
T Consensus 693 ------------~GaV~pL~~LL~~~d----~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G-~~~~k~~A 755 (2102)
T PLN03200 693 ------------EDAIKPLIKLAKSSS----IEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG-TLEGKRNA 755 (2102)
T ss_pred ------------cCCHHHHHHHHhCCC----hHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC-ChHHHHHH
Confidence 123455666664421 22333333333332 22222222 34689999999876 68899999
Q ss_pred HHHHHhhcccccccc----h--hHhHHHHHHHhhCCCCHHHHHH--HHHHHHHHHHH-hcccc
Q 000194 1050 IETLTRLIPRVQVTG----H--ISSLVHHLKLVLDGKNDELRKD--AVDALCCLAHA-LGEDF 1103 (1880)
Q Consensus 1050 i~~l~~l~~~~~~~~----~--~~~ii~~l~~~l~~~~~~l~~~--al~~L~~l~~~-~g~~f 1103 (1880)
..+|..|+.+-...+ + ...++.+|...|+..|.+.... ++++|..++.. .|..|
T Consensus 756 a~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~ 818 (2102)
T PLN03200 756 ARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANF 818 (2102)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCC
Confidence 999999998754333 3 2356888999999888766665 99999999884 34444
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-12 Score=163.34 Aligned_cols=587 Identities=16% Similarity=0.163 Sum_probs=345.2
Q ss_pred HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchh---HHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC-CCC
Q 000194 70 LYDRISGLLESNDAAENLGALRAIDELIDVALGENAS---KVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG-GAM 145 (1880)
Q Consensus 70 l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~---~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~-g~~ 145 (1880)
+.+.+..++.+++++.|+|+..=+-+++.-. |..++ +......-...++ .++|.=+-+.|++.+|-.=+.| +..
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l-~~~~~v~l~~~eI~~aF~~~L-sd~dEf~QDvAsrGlglVYelgd~~~ 896 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYL-GQQPEVVLMLKEIQEAFSHLL-SDNDEFSQDVASRGLGLVYELGDSSL 896 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-ccCchhhhccHHHHHHHHHHh-cccHHHHHHHHhcCceEEEecCCchh
Confidence 3445667888999999999988887887665 32222 2222222233333 2455555566666554322222 222
Q ss_pred chhHHHHHHHHHHhh-----------------------------------------------------hcCCCcchhHHH
Q 000194 146 TADEVEFQVKMALDW-----------------------------------------------------LRGDRVEYRRFA 172 (1880)
Q Consensus 146 ~~~~v~~~~~~~~~~-----------------------------------------------------l~~~~~~~~R~a 172 (1880)
..++|+.+++.+.+. -.....|+-|.+
T Consensus 897 k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~G 976 (1702)
T KOG0915|consen 897 KKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKG 976 (1702)
T ss_pred HHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccc
Confidence 233333333332211 012345778999
Q ss_pred HHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCC
Q 000194 173 AVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNA 252 (1880)
Q Consensus 173 A~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~ 252 (1880)
|...++.|+..+...+.||+++++|.+..-=-||++.||.+-..--+.+. . ........++..++++++.++.+.
T Consensus 977 aAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li---~-D~k~~vd~y~neIl~eLL~~lt~k- 1051 (1702)
T KOG0915|consen 977 AAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALI---T-DSKKVVDEYLNEILDELLVNLTSK- 1051 (1702)
T ss_pred hhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhc---c-ChHHHHHHHHHHHHHHHHHhccch-
Confidence 99999999999999999999999999999888999999887655434332 2 112245578899999999999987
Q ss_pred ChhHHHHHHHHHHHHHHcc-hhhhHHHHHHHHHHHHHHhhcchhHHHHHH---HHHhHhHhh----hChhhHHHHHHHHH
Q 000194 253 PVHSIHGSLLAVGELLRNT-GEFMMSRYREVAEIVLRYLEHRDRLVRLSI---TSLLPRIAH----FLRDRFVTNYLKIC 324 (1880)
Q Consensus 253 ~~~~~~~al~~l~~ll~~~-~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~---~~~i~~la~----~~~~~f~~~yl~~~ 324 (1880)
.|++|.++++||..|+++. .+.+.+++.+++..+++.+++=...||+++ +.+++.++. .....=.+..++.+
T Consensus 1052 ewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~i 1131 (1702)
T KOG0915|consen 1052 EWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDII 1131 (1702)
T ss_pred hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHH
Confidence 4999999999999999954 467888999999999999999899999986 455555442 11111123467788
Q ss_pred HHHHHHh--hcC-CCCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHH
Q 000194 325 MNHILTV--LRI-PAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHV 401 (1880)
Q Consensus 325 ~~~Ll~~--L~~-~~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l 401 (1880)
+|+|+.. +.+ +..|..++.++-.++...|+.+.||++.+++.+.++...-.+ ..+.-++ -.. ...-
T Consensus 1132 LPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~----~vLnYls---~r~----~~~e 1200 (1702)
T KOG0915|consen 1132 LPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEP----QVLNYLS---LRL----INIE 1200 (1702)
T ss_pred HHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccch----HHHHHHH---Hhh----hhhH
Confidence 8888753 322 235889999999999999999999999999998887743221 1111111 111 1111
Q ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCc
Q 000194 402 RGLLDIMFSAG-LSTTLVDALEQITVSIP-SLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGS 479 (1880)
Q Consensus 402 ~~ll~~l~~~~-ls~~l~~~l~~i~~~~p-~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1880)
.+.++.+..++ -+.++.+.+..+...+- ..+..+.+++.+.+. |. . + .+. . ..-.
T Consensus 1201 ~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R----~s-V---g------l~T--------k-vg~A 1257 (1702)
T KOG0915|consen 1201 TEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVR----GS-V---G------LGT--------K-VGCA 1257 (1702)
T ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHh----cc-C---C------CCc--------c-hhHH
Confidence 23344443322 22223222222221111 011122233333322 11 0 0 000 0 0000
Q ss_pred h-hHHHHHHhhccc-ccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHH
Q 000194 480 A-PVQLALQTLARF-NFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL 557 (1880)
Q Consensus 480 ~-~~~~Al~~L~~~-~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1880)
. ...++.+...++ +|.|. +...+++.+.+-++.||++-+.+|+.++.-.-. .....+
T Consensus 1258 ~fI~~L~~r~~~emtP~sgK-----ll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~----------------dq~qKL 1316 (1702)
T KOG0915|consen 1258 SFISLLVQRLGSEMTPYSGK-----LLRALFPGAKDRNESVRKAFASAMGYLAKFSSP----------------DQMQKL 1316 (1702)
T ss_pred HHHHHHHHHhccccCcchhH-----HHHHHhhccccccHHHHHHHHHHHHHHHhcCCh----------------HHHHHH
Confidence 0 112333322222 23332 223445778888999999999999998853210 012344
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccC--CCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccccc
Q 000194 558 IEELVEKLLIAAVADADVTVRHSIFSSLYG--NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVL 635 (1880)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~--~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~ 635 (1880)
+..++..++. -.++...++.+.+..+.. .+.+..| ...++|.+|.+++++..+....=-++|..++...-..+.
T Consensus 1317 ie~~l~~~l~--k~es~~siscatis~Ian~s~e~Lkn~--asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvr 1392 (1702)
T KOG0915|consen 1317 IETLLADLLG--KDESLKSISCATISNIANYSQEMLKNY--ASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVR 1392 (1702)
T ss_pred HHHHHHHHhc--cCCCccchhHHHHHHHHHhhHHHHHhh--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhh
Confidence 4444444431 111212455444443421 0111111 245899999999988655555555667666655443332
Q ss_pred HHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccccc-CchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHH
Q 000194 636 PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIR-PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGD 714 (1880)
Q Consensus 636 p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~-py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~ 714 (1880)
=++..+++.......++ .....|.+++..+-.++......+. |++-.+...+...+..+. .+=.+..+.++..
T Consensus 1393 l~~~eiLn~iceni~nn-~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GRi-----wdGKe~iLKAl~~ 1466 (1702)
T KOG0915|consen 1393 LYLLEILNLICENITNN-ESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGRI-----WDGKEEILKALAS 1466 (1702)
T ss_pred hhHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhccc-----cccHHHHHHHHHH
Confidence 25555555555555555 5678889999998888887666555 888888888888777642 2223455566665
Q ss_pred HHHhcCCchhhhHH
Q 000194 715 LARVGGFGMRQYIS 728 (1880)
Q Consensus 715 La~~~g~~~~~~~~ 728 (1880)
....++..+..-.+
T Consensus 1467 ~~~a~~~~v~~~~~ 1480 (1702)
T KOG0915|consen 1467 AFEAGLADVKRNMS 1480 (1702)
T ss_pred HHHHhHHHHHHhch
Confidence 55555555444444
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-12 Score=151.67 Aligned_cols=697 Identities=16% Similarity=0.153 Sum_probs=394.2
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchh
Q 000194 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNV 190 (1880)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~ 190 (1880)
|...|..++.-.-|.+-+....++++++.-.-+...-.||...+-.+-.++- +.+-.+|-.+-.++..|+..|+--+
T Consensus 205 fnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILvVv~plli-ded~~~r~~g~eii~nL~~~~Gl~~-- 281 (975)
T COG5181 205 FNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILVVVGPLLI-DEDLKRRCMGREIILNLVYRCGLGF-- 281 (975)
T ss_pred HHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEEEEeecccc-CccHHHhcccHHHHHHHHHHhccce--
Confidence 3334444443222344455666677777654344443343332222222221 2233455556566666766655321
Q ss_pred chHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc
Q 000194 191 HVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN 270 (1880)
Q Consensus 191 ~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~ 270 (1880)
++..+-.-+...++.||+-+..|.+.+.+.+. ..-+..+++.++. +..+|+.||.++.+...+...
T Consensus 282 ----~vs~mrpDi~~~deYVRnvt~ra~~vva~alg-------v~~llpfl~a~c~---SrkSw~aRhTgiri~qqI~~l 347 (975)
T COG5181 282 ----SVSSMRPDITSKDEYVRNVTGRAVGVVADALG-------VEELLPFLEALCG---SRKSWEARHTGIRIAQQICEL 347 (975)
T ss_pred ----eeeeccCCcccccHHHHHHHHHHHHHHHHhhC-------cHHHHHHHHHHhc---CccchhhhchhhHHHHHHHHH
Confidence 12222234446778999999999988766544 1223444444443 444699999999999998887
Q ss_pred chhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchH----HHHHH
Q 000194 271 TGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSG----FIALG 346 (1880)
Q Consensus 271 ~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a----~~alg 346 (1880)
.|.-..+|+..++..+-.++.+++..||-.+.+++..+|+....-=.+ .++.++-.|-.-.+. .|+.. +.|+|
T Consensus 348 lG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie-~fd~vl~pLw~g~~~--hrgk~l~sfLkA~g 424 (975)
T COG5181 348 LGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIE-QFDEVLCPLWEGASQ--HRGKELVSFLKAMG 424 (975)
T ss_pred hCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchH-HHHHHHHHHHHHHHh--cCCchHHHHHHHhc
Confidence 777778899999998888889999999999999999999765431111 224444333333221 23332 33333
Q ss_pred HHHhhchhh-hhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHH-HHHHHHHHhcCCCHHHHHHHHHH
Q 000194 347 EMAGALDGE-LFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHV-RGLLDIMFSAGLSTTLVDALEQI 424 (1880)
Q Consensus 347 ~la~~v~~~-~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l-~~ll~~l~~~~ls~~l~~~l~~i 424 (1880)
.+.-....+ ...|-..+|+++...+...+.+. ...+..+-.+|.++|.+-..++ .++.|.+|++- +
T Consensus 425 ~iiplm~peYa~h~tre~m~iv~ref~spdeem-kk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~f--------w--- 492 (975)
T COG5181 425 FIIPLMSPEYACHDTREHMEIVFREFKSPDEEM-KKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPF--------W--- 492 (975)
T ss_pred cccccCChHhhhhhHHHHHHHHHHHhCCchhhc-chhHHHHHHHHhccCCCCHHHHHHhhcHHhhchH--------H---
Confidence 332222211 11233567888888774443221 2455566677888877544444 46666666420 0
Q ss_pred HHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHH
Q 000194 425 TVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFAR 504 (1880)
Q Consensus 425 ~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~ 504 (1880)
..+ ..|+. ++. ... ...+..+| +++|+ +++-
T Consensus 493 -----------~rr--------~A~dr------------~~~-------k~v-~~ttvilA-k~~g~---------~~v~ 523 (975)
T COG5181 493 -----------RRR--------SAGDR------------RSY-------KQV-VLTTVILA-KMGGD---------PRVS 523 (975)
T ss_pred -----------Hhh--------hcccc------------ccc-------cee-ehhHHHHH-HHcCC---------hHHH
Confidence 000 00100 000 000 00011111 22221 4566
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHH-----
Q 000194 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRH----- 579 (1880)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~----- 579 (1880)
+-++.++.|+.+-.|+.+|.+..+++..-.. ..+ -.++....+..++. ++.+.+..+..
T Consensus 524 ~kil~~~~De~ep~r~m~a~~vsri~~~lg~----~~~-----------dErleerl~d~il~-Afqeq~~t~~~il~~f 587 (975)
T COG5181 524 RKILEYYSDEPEPYRKMNAGLVSRIFSRLGR----LGF-----------DERLEERLYDSILN-AFQEQDTTVGLILPCF 587 (975)
T ss_pred HHHHhhccCCcchhhhhhhHHHHHHHHhccc----ccc-----------cHHHHHHHHHHHHH-HHHhccccccEEEecc
Confidence 6667778888888899888887777643321 011 11222333333333 33443332211
Q ss_pred -HHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccc-cHHHHHHHHHHHHHHhcCCCChH
Q 000194 580 -SIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV-LPALRRHLIQLLTYLEQSSADNK 657 (1880)
Q Consensus 580 -~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v-~p~l~~~l~~~l~~l~~~~~~~~ 657 (1880)
+++.++. -+.-+|+ +.++..++..|+.+.+.||+.|.++.|.|+....+.= ...+++ +...|.+-... ..++
T Consensus 588 ~tv~vsl~--~r~kp~l--~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~k-lg~iLyE~lge-~ypE 661 (975)
T COG5181 588 STVLVSLE--FRGKPHL--SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAK-LGNILYENLGE-DYPE 661 (975)
T ss_pred cceeeehh--hccCcch--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHH-HhHHHHHhcCc-ccHH
Confidence 1122221 1222444 3578888899999999999999999998876433211 122222 22222221122 2444
Q ss_pred hHHHHHHHHHHHHHhCc-ccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhh--hHHhHHHHH
Q 000194 658 CREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQ--YISELMPLI 734 (1880)
Q Consensus 658 ~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~--~~~~l~p~l 734 (1880)
.-...+.++..+..... ..++|=+..|++.+.|.+++. ...|..+.+.-+|.++..+++...+ ++. +-=.+
T Consensus 662 vLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnk-----h~Kv~~nti~lvg~I~~~~peyi~~rEWMR-IcfeL 735 (975)
T COG5181 662 VLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNK-----HQKVVANTIALVGTICMNSPEYIGVREWMR-ICFEL 735 (975)
T ss_pred HHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhh-----hHHHhhhHHHHHHHHHhcCcccCCHHHHHH-HHHHH
Confidence 43344444444444332 557788899999999999975 6777777788888888877664322 222 22234
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccc
Q 000194 735 VEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ 814 (1880)
Q Consensus 735 ~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~ 814 (1880)
++.|... +.+.|.+|..++|.+.+..|. .+++..|++-|+.. ....|.-+--+||++|-.
T Consensus 736 vd~Lks~-nKeiRR~A~~tfG~Is~aiGP--------qdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~---------- 795 (975)
T COG5181 736 VDSLKSW-NKEIRRNATETFGCISRAIGP--------QDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEY---------- 795 (975)
T ss_pred HHHHHHh-hHHHHHhhhhhhhhHHhhcCH--------HHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhh----------
Confidence 4555533 467899999999999988775 26899999988754 233333222233333210
Q ss_pred cCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCC
Q 000194 815 LSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCV 894 (1880)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~ 894 (1880)
.-+-.|+++||.--..|.. .++..+..|++.+|+..|....
T Consensus 796 --------------------------------------cgpfsVlP~lm~dY~TPe~-nVQnGvLkam~fmFeyig~~s~ 836 (975)
T COG5181 796 --------------------------------------CGPFSVLPTLMSDYETPEA-NVQNGVLKAMCFMFEYIGQASL 836 (975)
T ss_pred --------------------------------------cCchhhHHHHHhcccCchh-HHHHhHHHHHHHHHHHHHHHHH
Confidence 0012456666665555543 4567899999999999999888
Q ss_pred CCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHH
Q 000194 895 PYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLC 974 (1880)
Q Consensus 895 ~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~ 974 (1880)
.|+-.|.|.+-.++.+.++..|......+.-++-.. .-....+..+.++.-.|.+.-.+... ....+...++.++
T Consensus 837 dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc--~gtg~eda~IHLlNllwpNIle~sPh---vi~~~~Eg~e~~~ 911 (975)
T COG5181 837 DYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC--PGTGDEDAAIHLLNLLWPNILEPSPH---VIQSFDEGMESFA 911 (975)
T ss_pred HHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC--CCcccHHHHHHHHHHhhhhccCCCcH---HHHHHHHHHHHHH
Confidence 999999999999998888777776554333322210 00123455566666677764322211 1225678888899
Q ss_pred HHhhhh
Q 000194 975 LALNDE 980 (1880)
Q Consensus 975 ~~l~~~ 980 (1880)
.+++..
T Consensus 912 ~~lg~g 917 (975)
T COG5181 912 TVLGSG 917 (975)
T ss_pred HHhccH
Confidence 998865
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-12 Score=147.67 Aligned_cols=561 Identities=15% Similarity=0.185 Sum_probs=339.8
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc-CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHH
Q 000194 122 KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIW 200 (1880)
Q Consensus 122 ~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~-~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~ 200 (1880)
+.|+-|+..++.++|-.+.+-| ..+ +...++.+- +.++|..||.++.+..++++-.+....+|+..++..|-
T Consensus 292 ~~deYVRnvt~ra~~vva~alg--v~~-----llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~ 364 (975)
T COG5181 292 SKDEYVRNVTGRAVGVVADALG--VEE-----LLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCIS 364 (975)
T ss_pred cccHHHHHHHHHHHHHHHHhhC--cHH-----HHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHH
Confidence 3577899999999998888743 111 112233332 56689999999999999999999888899999999999
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc-chhhhHHHH
Q 000194 201 VALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN-TGEFMMSRY 279 (1880)
Q Consensus 201 ~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~-~~~~~~~~~ 279 (1880)
.++.|.+..||-.++.++..+++... .....-+..++.-+-.|.+++.. ..-.+-+.|.|.++-. .+++.--+-
T Consensus 365 ~~l~D~~~~vRi~tA~alS~lae~~~----Pygie~fd~vl~pLw~g~~~hrg-k~l~sfLkA~g~iiplm~peYa~h~t 439 (975)
T COG5181 365 KLLKDRSRFVRIDTANALSYLAELVG----PYGIEQFDEVLCPLWEGASQHRG-KELVSFLKAMGFIIPLMSPEYACHDT 439 (975)
T ss_pred HHhhccceeeeehhHhHHHHHHHhcC----CcchHHHHHHHHHHHHHHHhcCC-chHHHHHHHhccccccCChHhhhhhH
Confidence 99999999999999999998877543 34455566777667666655421 2234444466666553 334555556
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC---CCCc-c--hHHHHHHHHHhhch
Q 000194 280 REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI---PAER-D--SGFIALGEMAGALD 353 (1880)
Q Consensus 280 ~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~---~~~r-~--~a~~alg~la~~v~ 353 (1880)
.+.++.+++.+++++...++.+.......++..... -..|.+++.|.+++..-. ..+| . ....+-..+|.-+|
T Consensus 440 re~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~t-p~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g 518 (975)
T COG5181 440 REHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDT-PWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGG 518 (975)
T ss_pred HHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCC-HHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcC
Confidence 678889999999988887777665554444433321 223567888887776532 1222 1 11222223455555
Q ss_pred hhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCC-CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCh
Q 000194 354 GELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGP-VMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLL 432 (1880)
Q Consensus 354 ~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~-~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~ 432 (1880)
. +.+...+.+.+.+....-+.-+....+.+...+|. .|..-+
T Consensus 519 ~------~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErl------------------------------- 561 (975)
T COG5181 519 D------PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERL------------------------------- 561 (975)
T ss_pred C------hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHH-------------------------------
Confidence 4 44556666666543211111233344444444443 232211
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHH-hhcccccCCCcchhhHHHHHhhhc
Q 000194 433 PTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQ-TLARFNFKGHDLLEFARDSVVLYL 511 (1880)
Q Consensus 433 ~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~-~L~~~~~~~~~l~~~v~~~~~~~l 511 (1880)
.+++++.+...+..+... + ..+--++. ++.+.+|.+..+.+.+-..++..+
T Consensus 562 ---eerl~d~il~Afqeq~~t------------------------~-~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L 613 (975)
T COG5181 562 ---EERLYDSILNAFQEQDTT------------------------V-GLILPCFSTVLVSLEFRGKPHLSMIVSTILKLL 613 (975)
T ss_pred ---HHHHHHHHHHHHHhcccc------------------------c-cEEEecccceeeehhhccCcchHHHHHHHHHHh
Confidence 122222222111111000 0 00000000 011223444433344445567889
Q ss_pred cCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC---C
Q 000194 512 DDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG---N 588 (1880)
Q Consensus 512 ~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~---~ 588 (1880)
.++.++||..|+..|+.+.. ...+| . ....+..+= -++--.+.+..|+|--+++.++.. .
T Consensus 614 ~~k~p~vR~~aadl~~sl~~-vlk~c----------~-----e~~~l~klg-~iLyE~lge~ypEvLgsil~Ai~~I~sv 676 (975)
T COG5181 614 RSKPPDVRIRAADLMGSLAK-VLKAC----------G-----ETKELAKLG-NILYENLGEDYPEVLGSILKAICSIYSV 676 (975)
T ss_pred cCCCccHHHHHHHHHHHHHH-HHHhc----------c-----hHHHHHHHh-HHHHHhcCcccHHHHHHHHHHHHHHhhh
Confidence 99999999999998887653 22222 0 011111111 112223567778888887777641 1
Q ss_pred CCcchhhc--cHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH-HHHHHHHHHHHhcCCCChHhHHHHHHH
Q 000194 589 RGFDDFLA--QADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL-RRHLIQLLTYLEQSSADNKCREESAKL 665 (1880)
Q Consensus 589 ~~fd~~L~--~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l-~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1880)
..|+. +. -..+++.|...|...+..|....++++|.++...|.++-+.- .++...++..|... ..+.|..|...
T Consensus 677 ~~~~~-mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~--nKeiRR~A~~t 753 (975)
T COG5181 677 HRFRS-MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW--NKEIRRNATET 753 (975)
T ss_pred hcccc-cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh--hHHHHHhhhhh
Confidence 23331 10 124678888888888999999999999999999999876532 33445566666544 56778899999
Q ss_pred HHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchh
Q 000194 666 LGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVT 745 (1880)
Q Consensus 666 L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~ 745 (1880)
+|.+.+..++ ..++..|+..++-. +...+.....+|+..++++|.. .++|.++.--..+ +..
T Consensus 754 fG~Is~aiGP------qdvL~~LlnnLkvq-----eRq~RvctsvaI~iVae~cgpf------sVlP~lm~dY~TP-e~n 815 (975)
T COG5181 754 FGCISRAIGP------QDVLDILLNNLKVQ-----ERQQRVCTSVAISIVAEYCGPF------SVLPTLMSDYETP-EAN 815 (975)
T ss_pred hhhHHhhcCH------HHHHHHHHhcchHH-----HHHhhhhhhhhhhhhHhhcCch------hhHHHHHhcccCc-hhH
Confidence 9999988662 56788888877643 3334444455777788877752 4667766544433 345
Q ss_pred hHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000194 746 KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 746 ~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~l 801 (1880)
+..-.+++++-+.+++|..-.-|.. .+.+.|-..|.+ .++.-|..+..+|.-+
T Consensus 816 VQnGvLkam~fmFeyig~~s~dYvy--~itPlleDAltD-rD~vhRqta~nvI~Hl 868 (975)
T COG5181 816 VQNGVLKAMCFMFEYIGQASLDYVY--SITPLLEDALTD-RDPVHRQTAMNVIRHL 868 (975)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhcc-cchHHHHHHHHHHHHH
Confidence 6777789999999999875444432 456666666653 4666677666665443
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-10 Score=143.59 Aligned_cols=437 Identities=15% Similarity=0.201 Sum_probs=290.4
Q ss_pred hhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCc-ccc
Q 000194 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE-RLI 677 (1880)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~-~~~ 677 (1880)
.++|.|+..--|++..||.+...+|+.|.......+-.++..++-+++..+.+ ..+|+||.+|-+|.++++.-+ +.+
T Consensus 998 kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~--kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen 998 KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTS--KEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred HhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHcCCChHHH
Confidence 56888888889999999999999999999876666777888888888888765 589999999999999998754 344
Q ss_pred cCchHHHHHHHHHHhccCCCCCCChhHHHHH---HHHHHHHHHhc-----CCchhhhHHhHHHHHHH--HHhcCCchhhH
Q 000194 678 RPYIAPIHKALVARLLEGTGINANNGIISGV---LVTVGDLARVG-----GFGMRQYISELMPLIVE--ALLDGAAVTKR 747 (1880)
Q Consensus 678 ~py~~~il~~ll~~l~~~~~~~~~~~v~~~~---~~~l~~La~~~-----g~~~~~~~~~l~p~l~~--~l~d~~~~~~r 747 (1880)
...++.+-..+...+.|- ..+|+.++ +.+++.+.... |..-...++.++|.+++ .+. .-.++|
T Consensus 1076 ~e~lpelw~~~fRvmDDI-----KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims--~v~evr 1148 (1702)
T KOG0915|consen 1076 KEKLPELWEAAFRVMDDI-----KESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMS--KVNEVR 1148 (1702)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCccc--chHHHH
Confidence 555666666666666553 44555443 45555544322 33456677777887776 232 235799
Q ss_pred HHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HcccCccchhhccccCCCcccccccC
Q 000194 748 EVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGI-MGALDPHAHKRNQQLSGSHGEVTRAA 826 (1880)
Q Consensus 748 ~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~-lgaldp~~~~~~~~~~~~~~~~~~~~ 826 (1880)
..++.++..++.+.|..+.||. |.|++.|++....-++..+-.-++++.++ ..++|..+- .
T Consensus 1149 ~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~----------------s 1210 (1702)
T KOG0915|consen 1149 RFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRA----------------S 1210 (1702)
T ss_pred HHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHH----------------h
Confidence 9999999999999999999985 89999999998755566666666666443 123332210 0
Q ss_pred CCCCCC-CCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCC-ChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHH
Q 000194 827 SDSGQH-IQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDP-SLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDL 904 (1880)
Q Consensus 827 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~-s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~l 904 (1880)
...+.| .+.++.. + +..+.-.....++.+.+.++-. -+. ....+...+..+...+|...-||.++++..+
T Consensus 1211 ~aksspmmeTi~~c----i---~~iD~~vLeelip~l~el~R~sVgl~-Tkvg~A~fI~~L~~r~~~emtP~sgKll~al 1282 (1702)
T KOG0915|consen 1211 AAKSSPMMETINKC----I---NYIDISVLEELIPRLTELVRGSVGLG-TKVGCASFISLLVQRLGSEMTPYSGKLLRAL 1282 (1702)
T ss_pred hhcCCcHHHHHHHH----H---HhhhHHHHHHHHHHHHHHHhccCCCC-cchhHHHHHHHHHHHhccccCcchhHHHHHH
Confidence 000000 0011100 0 0011111223445555555432 121 2335667777788889999999999999999
Q ss_pred HHHHhcCCcchhHHHHHHHHHHHHHHHH-hHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhc
Q 000194 905 FHTVRTCDDYLKDYITWKLGTLVSIVRQ-HIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRT 983 (1880)
Q Consensus 905 l~~l~~~~~~~~~~~~~~l~~lv~~~~~-~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~ 983 (1880)
+..+++.+++.+..+..+.|-++....+ .+..++... +.+++.+.+.+ +. ....++..++.-..+.++.
T Consensus 1283 ~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~---l~~~l~k~es~------~s-iscatis~Ian~s~e~Lkn 1352 (1702)
T KOG0915|consen 1283 FPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETL---LADLLGKDESL------KS-ISCATISNIANYSQEMLKN 1352 (1702)
T ss_pred hhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHH---HHHHhccCCCc------cc-hhHHHHHHHHHhhHHHHHh
Confidence 9999998888888888888888876654 555555554 44444443311 12 4455555588899999999
Q ss_pred cchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhh-hhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccccc-
Q 000194 984 HLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDE-HMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQ- 1061 (1880)
Q Consensus 984 yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~-~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~~~- 1061 (1880)
|...++|++.=...+.++. ..+.-.++...++..|...-. |...++-.+|.-..++.+..+|..+...+..++.+..
T Consensus 1353 ~asaILPLiFLa~~ee~Ka-~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~ss 1431 (1702)
T KOG0915|consen 1353 YASAILPLIFLAMHEEEKA-NQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSS 1431 (1702)
T ss_pred hHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccc
Confidence 9999999987555432111 122234566655554443322 5556666666666666789999999999999988732
Q ss_pred --ccchhHhHHHHHHHhhCCCC
Q 000194 1062 --VTGHISSLVHHLKLVLDGKN 1081 (1880)
Q Consensus 1062 --~~~~~~~ii~~l~~~l~~~~ 1081 (1880)
..|++-.+...+...+.+.-
T Consensus 1432 s~~~p~ilkl~~~ll~~L~GRi 1453 (1702)
T KOG0915|consen 1432 SAPIPVILKLALSLLDTLNGRI 1453 (1702)
T ss_pred cCChHHHHHHHHHHHHHhhccc
Confidence 23677777777777776653
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-12 Score=150.64 Aligned_cols=369 Identities=14% Similarity=0.111 Sum_probs=258.2
Q ss_pred HHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchh
Q 000194 28 RILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENAS 106 (1880)
Q Consensus 28 ~l~~~l~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~ 106 (1880)
.+.++|.++..++|+ ||.||++.|+....+-.-+...+++.++.+ +.+.+++.+.|+||+.|+.+..-..+.+...
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~---d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~ 80 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAG---DYAYSPHANMRKGGLIGLAAVAIALGIKDAG 80 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH---HhccCcccccccchHHHHHHHHHHhccccHH
Confidence 366788888888887 899999999988888887888888777765 7889999999999999999984333233444
Q ss_pred HHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCC---------------------
Q 000194 107 KVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDR--------------------- 165 (1880)
Q Consensus 107 ~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~--------------------- 165 (1880)
++.+...-+..+|. +.|..|+..|++.+..+++...+...-|++..+.... -+..+.
T Consensus 81 Y~~~iv~Pv~~cf~-D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~-klsaDsd~~V~~~aeLLdRLikdIVte 158 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFS-DQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLC-KLSADSDQNVRGGAELLDRLIKDIVTE 158 (675)
T ss_pred HHHHhhHHHHHhcc-CccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHH-HHhcCCccccccHHHHHHHHHHHhccc
Confidence 66666667777774 7789999999999998888632221112221111111 111111
Q ss_pred ---------------------cchhHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 000194 166 ---------------------VEYRRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLR 223 (1880)
Q Consensus 166 ---------------------~~~~R~aA~~~l~~la~~~p~-~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1880)
+...|..-+.-+ .+..+.|. -|..|++.+++.+++.|.|+++.||.-+..++++++.
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl-~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVINPMTRQFLVSWL-YVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred cccccCHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 222333322222 22334555 6889999999999999999999999999999999998
Q ss_pred HHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhH-HHHHHH
Q 000194 224 VIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRL-VRLSIT 302 (1880)
Q Consensus 224 ~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~-Vr~~~~ 302 (1880)
.|....... -+..+.+.+...++++. .+.+.-|+..+.+++...|..+.+++..++..++.++.+.++. ++..+.
T Consensus 238 eI~s~P~s~---d~~~~i~vlv~~l~ss~-~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~ 313 (675)
T KOG0212|consen 238 EIRSSPSSM---DYDDMINVLVPHLQSSE-PEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQ 313 (675)
T ss_pred HHhcCcccc---CcccchhhccccccCCc-HHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHH
Confidence 776422111 24566777777888775 6778888999999999999999999999999999998877663 665544
Q ss_pred HHhHhHhhhChhhHHH--HHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCC
Q 000194 303 SLLPRIAHFLRDRFVT--NYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP 378 (1880)
Q Consensus 303 ~~i~~la~~~~~~f~~--~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~ 378 (1880)
..-+.+-....+.+.. --+..++..+...+.++. .|..++..+..+-...|.++..+.++|...+...|.+.++.+
T Consensus 314 ~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~v 393 (675)
T KOG0212|consen 314 MVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEV 393 (675)
T ss_pred HHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHH
Confidence 3333322211111111 123688888888887654 488999999999999999999999999999999998766544
Q ss_pred CchHHHHHHHHHHHhCC-CchHHHHHHHH
Q 000194 379 SLEALACVGNIARAMGP-VMEPHVRGLLD 406 (1880)
Q Consensus 379 ~~~a~~~l~~la~~~g~-~~~~~l~~ll~ 406 (1880)
-..++..++.+|..-.. ...+++..+++
T Consensus 394 vl~~L~lla~i~~s~~~~~~~~fl~sLL~ 422 (675)
T KOG0212|consen 394 VLLALSLLASICSSSNSPNLRKFLLSLLE 422 (675)
T ss_pred HHHHHHHHHHHhcCcccccHHHHHHHHHH
Confidence 34455555555554332 34556666655
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.5e-12 Score=152.82 Aligned_cols=379 Identities=14% Similarity=0.096 Sum_probs=251.4
Q ss_pred ccccccCCCCC-CCCCCCHHHHHHHHHHHcCC-C-CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-C
Q 000194 6 QSLRYIGPPAP-GAGGGSLDALNRILADLCTH-G-NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-N 81 (1880)
Q Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~s~-~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~ 81 (1880)
+..--|+||.. -.++.+.+.+...+..+.+. . .++.+|+.++..+|....-+.-.+ .. +...+.+.+.. .
T Consensus 114 ~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~--~~----~l~~l~~ai~dk~ 187 (569)
T KOG1242|consen 114 RAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE--FG----FLDNLSKAIIDKK 187 (569)
T ss_pred HHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh--hh----HHHHHHHHhcccc
Confidence 34456999988 56777777777766666543 2 466679999999986554443322 12 23334444544 4
Q ss_pred ChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhh-CCCCchhHHHHHHHHHHhh
Q 000194 82 DAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA-GGAMTADEVEFQVKMALDW 160 (1880)
Q Consensus 82 ~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~-~g~~~~~~v~~~~~~~~~~ 160 (1880)
....|.++..|+..+....+....+.+..+.+.+...+ ++.+..|+..|..+...+... .......++++.+....
T Consensus 188 ~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~-- 264 (569)
T KOG1242|consen 188 SALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNF-GDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLL-- 264 (569)
T ss_pred hhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHh-hccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHH--
Confidence 55566689999999977653222344444444444444 255788999888888887765 22223344444444443
Q ss_pred hcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Q 000194 161 LRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240 (1880)
Q Consensus 161 l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~ 240 (1880)
+. .|+.+.+++.+++.+++++|.++.-++++++|.+...|.|.++.||+++.+++..+.+++.+.+ ...+
T Consensus 265 --~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-------I~~~ 334 (569)
T KOG1242|consen 265 --EA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-------IQKI 334 (569)
T ss_pred --HH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-------HHHH
Confidence 33 8899999999999999999999999999999999999999999999999999999988877543 2334
Q ss_pred HHHHHhhccCCC--------------------------------------ChhHHHHHHHHHHHHHHc--chhhhHHHHH
Q 000194 241 FEATQDGLGRNA--------------------------------------PVHSIHGSLLAVGELLRN--TGEFMMSRYR 280 (1880)
Q Consensus 241 l~~~~~~l~~~~--------------------------------------~~~~~~~al~~l~~ll~~--~~~~~~~~~~ 280 (1880)
+|.+.++++++. +...+..++.+++.+..- ....+.|+++
T Consensus 335 ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~ 414 (569)
T KOG1242|consen 335 IPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP 414 (569)
T ss_pred HHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH
Confidence 444444333332 123334444455555442 2346778888
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC---CCcchHHHHHHHHHhhchhhhh
Q 000194 281 EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP---AERDSGFIALGEMAGALDGELF 357 (1880)
Q Consensus 281 ~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~---~~r~~a~~alg~la~~v~~~~~ 357 (1880)
++++.+-..+.+..|.||..+..+++.+-+-.. +.+++...|++...++.. .+|..+.+.++.+....|.
T Consensus 415 ~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g----~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v--- 487 (569)
T KOG1242|consen 415 SLLPGLKENLDDAVPEVRAVAARALGALLERLG----EVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGV--- 487 (569)
T ss_pred HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHH----hhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccc---
Confidence 888888887777899999999999987764333 335588899999888654 3677888888887766664
Q ss_pred hhhhHHHHHHHHhhcCCCCC--CCchHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 000194 358 HYLPTITSHLREAIAPRRGK--PSLEALACVGNIARAMGPVMEPHVRGLLDIMFS 410 (1880)
Q Consensus 358 p~l~~i~~~l~~~l~~~~~~--~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~ 410 (1880)
++...++..+.......... .+......+..+-...|..+.||+.++++.+.+
T Consensus 488 ~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k 542 (569)
T KOG1242|consen 488 EKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLK 542 (569)
T ss_pred hHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHH
Confidence 34444554444333222111 223344455555556677888999988887664
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.6e-11 Score=142.07 Aligned_cols=311 Identities=15% Similarity=0.130 Sum_probs=222.5
Q ss_pred hcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH-HHHH
Q 000194 78 LESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF-QVKM 156 (1880)
Q Consensus 78 ~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~-~~~~ 156 (1880)
...+....+.+-..++..+.....+.. ...+..-+..++. ..+..-++.|+..+..++...| ...+.+. .+..
T Consensus 105 ~~tps~~~q~~~~~~l~~~~~~~~~~~---~~~~l~~l~~ll~-~~~~~~~~~aa~~~ag~v~g~~--i~~~~~~~~l~~ 178 (569)
T KOG1242|consen 105 LDTPSKSVQRAVSTCLPPLVVLSKGLS---GEYVLELLLELLT-STKIAERAGAAYGLAGLVNGLG--IESLKEFGFLDN 178 (569)
T ss_pred cCCCcHHHHHHHHHHhhhHHHHhhccC---HHHHHHHHHHHhc-cccHHHHhhhhHHHHHHHcCcH--HhhhhhhhHHHH
Confidence 334555566666666666644321221 2345555666665 5567777888888877776422 2222222 3444
Q ss_pred HHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH
Q 000194 157 ALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW 236 (1880)
Q Consensus 157 ~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~ 236 (1880)
....+++.+...+|.++..+......+.+..+.||+..++|.|+..+.|..+.||+||.+|.++++..+.. +-
T Consensus 179 l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~-------~a 251 (569)
T KOG1242|consen 179 LSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA-------YA 251 (569)
T ss_pred HHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc-------ch
Confidence 44445555555566688889888899999999999999999999999999999999999999998876541 23
Q ss_pred HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhH
Q 000194 237 YYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRF 316 (1880)
Q Consensus 237 ~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f 316 (1880)
++.+++.++.++... .|..+.+++..+|.+..+.+..+...+.++++.+...+.+..+.||++...++-.+......
T Consensus 252 VK~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN-- 328 (569)
T KOG1242|consen 252 VKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN-- 328 (569)
T ss_pred hhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc--
Confidence 556677777666655 59999999999999999999888889999999999999999999999999999888765432
Q ss_pred HHHHHHHHHHHHHHhhcCCCC-cchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhC-
Q 000194 317 VTNYLKICMNHILTVLRIPAE-RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMG- 394 (1880)
Q Consensus 317 ~~~yl~~~~~~Ll~~L~~~~~-r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g- 394 (1880)
.-+...+|.|+.++..+.. -..+...||.- ..|..--.|-+.-+++.++.++.+........+...++.++.-+.
T Consensus 329 --~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~t-tFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveD 405 (569)
T KOG1242|consen 329 --PDIQKIIPTLLDALADPSCYTPECLDSLGAT-TFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED 405 (569)
T ss_pred --HHHHHHHHHHHHHhcCcccchHHHHHhhcce-eeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC
Confidence 2356778888999988773 34666666652 112211126667788999999965544334567888888888773
Q ss_pred -CCchHHHHHHHHH
Q 000194 395 -PVMEPHVRGLLDI 407 (1880)
Q Consensus 395 -~~~~~~l~~ll~~ 407 (1880)
..+.||++.++|.
T Consensus 406 p~~lapfl~~Llp~ 419 (569)
T KOG1242|consen 406 PKDLAPFLPSLLPG 419 (569)
T ss_pred HHHHhhhHHHHhhH
Confidence 2678888877765
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.5e-07 Score=106.64 Aligned_cols=418 Identities=15% Similarity=0.137 Sum_probs=256.7
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHH
Q 000194 198 AIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMS 277 (1880)
Q Consensus 198 ~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~ 277 (1880)
.|.++|.|.-.+-|.||+--+....+..-+ .....++.++++.+......+.....+.|++..+.+..-+-|..-.+
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~---~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~ 80 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVN---NNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG 80 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHc---cCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH
Confidence 467899999999999999887766553322 12346788888877665433222334669988888876655555556
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh
Q 000194 278 RYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE 355 (1880)
Q Consensus 278 ~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~ 355 (1880)
|.+.++.-++.++.+.+..||.-+|..+-.+|..+..++.. |++.+...+.......+ .|+.|-.--+.+-..|-+.
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~-~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV-YFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTES 159 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc-chHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999888777654 77888888777765432 3443322222221122111
Q ss_pred hhh-hhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHH
Q 000194 356 LFH-YLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPT 434 (1880)
Q Consensus 356 ~~p-~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~ 434 (1880)
-.. .++.+++.+.+-+-..++.. ..|+-.=+ .+-...|.
T Consensus 160 ~~tFsL~~~ipLL~eriy~~n~~t-------------------R~flv~Wl-----------------~~Lds~P~---- 199 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIYVINPMT-------------------RQFLVSWL-----------------YVLDSVPD---- 199 (675)
T ss_pred ccccCHHHHHHHHHHHHhcCCchH-------------------HHHHHHHH-----------------HHHhcCCc----
Confidence 001 23445555554442211110 00110000 00000000
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCC
Q 000194 435 IQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDE 514 (1880)
Q Consensus 435 i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~ 514 (1880)
+++++ ..|.+.+-+..++.|+
T Consensus 200 ---------------------------------------------------~~m~~--------yl~~~ldGLf~~LsD~ 220 (675)
T KOG0212|consen 200 ---------------------------------------------------LEMIS--------YLPSLLDGLFNMLSDS 220 (675)
T ss_pred ---------------------------------------------------HHHHh--------cchHHHHHHHHHhcCC
Confidence 11111 1233444555677888
Q ss_pred ChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchh
Q 000194 515 DKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDF 594 (1880)
Q Consensus 515 ~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~ 594 (1880)
+++||..+-.++..++ ....++|+. ++.
T Consensus 221 s~eVr~~~~t~l~~fL------------------------------------~eI~s~P~s---------------~d~- 248 (675)
T KOG0212|consen 221 SDEVRTLTDTLLSEFL------------------------------------AEIRSSPSS---------------MDY- 248 (675)
T ss_pred cHHHHHHHHHHHHHHH------------------------------------HHHhcCccc---------------cCc-
Confidence 8889864433222222 111223321 010
Q ss_pred hccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCc
Q 000194 595 LAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE 674 (1880)
Q Consensus 595 L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~ 674 (1880)
.+.++.+..-++.++++++..|+.-+..+++..|..++|++.+++...+..+.++ +....++.+...=+.+.+-++
T Consensus 249 ---~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~-e~~~i~~~a~~~n~~l~~l~s 324 (675)
T KOG0212|consen 249 ---DDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDT-EEMSIKEYAQMVNGLLLKLVS 324 (675)
T ss_pred ---ccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCC-ccccHHHHHHHHHHHHHHHHh
Confidence 2345666666778889999999999999999999999999988877777666554 222344444433333332221
Q ss_pred c-ccc--CchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHH
Q 000194 675 R-LIR--PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAV 751 (1880)
Q Consensus 675 ~-~~~--py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al 751 (1880)
. ..+ --+.+|++++.+.+.++ ....+.+++.=+..+-...+.++..|.+++.+.+++.|.|. ++++-..++
T Consensus 325 ~~~~~~~id~~~ii~vl~~~l~~~-----~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~-sd~vvl~~L 398 (675)
T KOG0212|consen 325 SERLKEEIDYGSIIEVLTKYLSDD-----REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDR-SDEVVLLAL 398 (675)
T ss_pred hhhhccccchHHHHHHHHHHhhcc-----hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCc-hhHHHHHHH
Confidence 1 111 12348999999999875 45566777777777888889999999999999999999997 466777788
Q ss_pred HHHHHHHhhcCcccccCCcchHHHHHHHHHhcCC
Q 000194 752 STLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGE 785 (1880)
Q Consensus 752 ~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~ 785 (1880)
.-+..+|...... ++-..+..|+++.+.+
T Consensus 399 ~lla~i~~s~~~~-----~~~~fl~sLL~~f~e~ 427 (675)
T KOG0212|consen 399 SLLASICSSSNSP-----NLRKFLLSLLEMFKED 427 (675)
T ss_pred HHHHHHhcCcccc-----cHHHHHHHHHHHHhhh
Confidence 8888887765432 3345666666666543
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.9e-07 Score=116.01 Aligned_cols=444 Identities=13% Similarity=0.085 Sum_probs=252.2
Q ss_pred HHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc
Q 000194 25 ALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGE 103 (1880)
Q Consensus 25 ~~~~l~~~l~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~ 103 (1880)
.+..|-+.|.+++..+++ | +++++..... ++....++.++. +++.+++...|+=+-+.+..+....
T Consensus 33 e~~ELr~~L~s~~~~~kk~a---lKkvIa~mt~---G~DvS~LF~dVv----k~~~S~d~elKKLvYLYL~~ya~~~--- 99 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAA---VKRIIANMTM---GRDVSYLFVDVV----KLAPSTDLELKKLVYLYVLSTARLQ--- 99 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHH---HHHHHHHHHC---CCCchHHHHHHH----HHhCCCCHHHHHHHHHHHHHHcccC---
Confidence 345566777777543332 4 5666643333 334444444444 5778889888877777776664432
Q ss_pred chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh
Q 000194 104 NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN 183 (1880)
Q Consensus 104 ~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~ 183 (1880)
+....-..|.+.+=+. +.++.++..|-++++.+-. +++++..+..+...+ .+++.-.|.+|++++..+-..
T Consensus 100 -pelalLaINtl~KDl~-d~Np~IRaLALRtLs~Ir~------~~i~e~l~~~lkk~L-~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 100 -PEKALLAVNTFLQDTT-NSSPVVRALAVRTMMCIRV------SSVLEYTLEPLRRAV-ADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred -hHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Confidence 2223334566666664 5688999999999987643 445555444444444 356667777777888888888
Q ss_pred cCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHH
Q 000194 184 ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLA 263 (1880)
Q Consensus 184 ~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~ 263 (1880)
.|+.+.. ..+++.+...|.|+++.|...|..+|..+... .+ ..-......+..++..+.+-++|-+. .+
T Consensus 171 ~pelv~~--~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~----~~-~~l~l~~~~~~~Ll~~L~e~~EW~Qi----~I 239 (746)
T PTZ00429 171 DMQLFYQ--QDFKKDLVELLNDNNPVVASNAAAIVCEVNDY----GS-EKIESSNEWVNRLVYHLPECNEWGQL----YI 239 (746)
T ss_pred Ccccccc--cchHHHHHHHhcCCCccHHHHHHHHHHHHHHh----Cc-hhhHHHHHHHHHHHHHhhcCChHHHH----HH
Confidence 8876431 13445555668999999988888877766431 11 11122344455556666554456533 45
Q ss_pred HHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC-CCcchHH
Q 000194 264 VGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP-AERDSGF 342 (1880)
Q Consensus 264 l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~-~~r~~a~ 342 (1880)
|..|....++ -......++..+...++|.|+.|--.++.++-.+..+......+..+..+-+-++..+.++ ..|-.++
T Consensus 240 L~lL~~y~P~-~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaL 318 (746)
T PTZ00429 240 LELLAAQRPS-DKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIVC 318 (746)
T ss_pred HHHHHhcCCC-CcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHH
Confidence 5555542221 1223457888888889999999998888888777755433344444444444444444433 3466777
Q ss_pred HHHHHHHhhchhhhhhhhhH------------------------------HHHHHHHhhcCCCCCCCchHHHHHHHHHHH
Q 000194 343 IALGEMAGALDGELFHYLPT------------------------------ITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1880)
Q Consensus 343 ~alg~la~~v~~~~~p~l~~------------------------------i~~~l~~~l~~~~~~~~~~a~~~l~~la~~ 392 (1880)
..|..++..-+.-+.+++.. |+..+.++..+.+......++.++|.+|..
T Consensus 319 r~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 319 KNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIK 398 (746)
T ss_pred HHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence 77777766655544333321 222233333322222224688999999988
Q ss_pred hCCCchHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCc
Q 000194 393 MGPVMEPHVRGLLDIMFSAG-LSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQ 471 (1880)
Q Consensus 393 ~g~~~~~~l~~ll~~l~~~~-ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1880)
+.......++.+++.+-..+ ...+....++.+.+..|.. .+...+.+.+ .
T Consensus 399 ~~~~a~~cV~~Ll~ll~~~~~~v~e~i~vik~IlrkyP~~--~il~~L~~~~----~----------------------- 449 (746)
T PTZ00429 399 VDSVAPDCANLLLQIVDRRPELLPQVVTAAKDIVRKYPEL--LMLDTLVTDY----G----------------------- 449 (746)
T ss_pred ChHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHCccH--HHHHHHHHhh----c-----------------------
Confidence 76555556666665542211 2223345566666666652 1222222110 0
Q ss_pred cccccCCchhHHHHHHhhcccc-cCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccC
Q 000194 472 QVSDLNGSAPVQLALQTLARFN-FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSF 534 (1880)
Q Consensus 472 ~~~~~~~~~~~~~Al~~L~~~~-~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~ 534 (1880)
.++..+.+.++..+.+||+|. +-+. ...+++..+..+.+ +++.||.+...++.+++...+
T Consensus 450 -~~~i~e~~AKaaiiWILGEy~~~I~~-a~~~L~~~i~~f~~-E~~~VqlqlLta~vKlfl~~p 510 (746)
T PTZ00429 450 -ADEVVEEEAKVSLLWMLGEYCDFIEN-GKDIIQRFIDTIME-HEQRVQLAILSAAVKMFLRDP 510 (746)
T ss_pred -ccccccHHHHHHHHHHHHhhHhhHhh-HHHHHHHHHhhhcc-CCHHHHHHHHHHHHHHHhcCc
Confidence 011224445566688999982 2111 11233343333333 567899888888888886543
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-07 Score=124.63 Aligned_cols=418 Identities=16% Similarity=0.155 Sum_probs=244.9
Q ss_pred HHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChH
Q 000194 47 LRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDRE 126 (1880)
Q Consensus 47 l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~ 126 (1880)
+.+++--. +.+..+.. +...+.+++.+++...|.-|-+++..+..... ..+.-..|.+.+=+. ++++.
T Consensus 27 l~kli~~~---~~G~~~~~----~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~----~~~~l~~n~l~kdl~-~~n~~ 94 (526)
T PF01602_consen 27 LKKLIYLM---MLGYDISF----LFMEVIKLISSKDLELKRLGYLYLSLYLHEDP----ELLILIINSLQKDLN-SPNPY 94 (526)
T ss_dssp HHHHHHHH---HTT---GS----THHHHHCTCSSSSHHHHHHHHHHHHHHTTTSH----HHHHHHHHHHHHHHC-SSSHH
T ss_pred HHHHHHHH---HcCCCCch----HHHHHHHHhCCCCHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHhhc-CCCHH
Confidence 66666333 34444432 34455678889999999999999998876542 233345677777675 56889
Q ss_pred HHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCC
Q 000194 127 ILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDP 206 (1880)
Q Consensus 127 v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~ 206 (1880)
++..|-++++.+. .++.++..++.+.+.+. ++++..|..|+.++..+....|+.+... +++.+...|.|+
T Consensus 95 ~~~lAL~~l~~i~------~~~~~~~l~~~v~~ll~-~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~ 164 (526)
T PF01602_consen 95 IRGLALRTLSNIR------TPEMAEPLIPDVIKLLS-DPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDK 164 (526)
T ss_dssp HHHHHHHHHHHH-------SHHHHHHHHHHHHHHHH-SSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHS
T ss_pred HHHHHHhhhhhhc------ccchhhHHHHHHHHHhc-CCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCC
Confidence 9999999999876 45666666666666665 4555788888999999999988876543 677888889999
Q ss_pred chhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChh-----------------HH--HHHHHHHHHH
Q 000194 207 TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVH-----------------SI--HGSLLAVGEL 267 (1880)
Q Consensus 207 ~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~-----------------~~--~~al~~l~~l 267 (1880)
++.|+.+|..++..+ + ..+ .........++..+.+.+..+++|. .. ...+..+..+
T Consensus 165 ~~~V~~~a~~~l~~i-~---~~~-~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~ 239 (526)
T PF01602_consen 165 DPSVVSAALSLLSEI-K---CND-DSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNL 239 (526)
T ss_dssp SHHHHHHHHHHHHHH-H---CTH-HHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHH-c---cCc-chhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHH
Confidence 999999999988877 1 011 1100233333333333333333221 11 1112222222
Q ss_pred HHcchh--------h------hHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhc
Q 000194 268 LRNTGE--------F------MMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLR 333 (1880)
Q Consensus 268 l~~~~~--------~------~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~ 333 (1880)
+...+. . -.+....++..+..++.++++.+|..++..+..++...+..+ . +... ....+.
T Consensus 240 l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v-~-~~~~----~~~~l~ 313 (526)
T PF01602_consen 240 LQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAV-F-NQSL----ILFFLL 313 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHH-G-THHH----HHHHHH
T ss_pred hhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhh-h-hhhh----hhheec
Confidence 221110 0 001233455555666666666677777777776665543221 1 1011 111222
Q ss_pred CCC---CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCC-CCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 000194 334 IPA---ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR-RGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMF 409 (1880)
Q Consensus 334 ~~~---~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~-~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~ 409 (1880)
... -|..++..+..++..- -...|++.+...+.+. ....+..++..++.++..+.+....+++.+++.+.
T Consensus 314 ~~~d~~Ir~~~l~lL~~l~~~~------n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~ 387 (526)
T PF01602_consen 314 YDDDPSIRKKALDLLYKLANES------NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLE 387 (526)
T ss_dssp CSSSHHHHHHHHHHHHHH--HH------HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHhhccccc------chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhh
Confidence 222 2555666555554322 1233455555555211 22234578899999999998888889988888776
Q ss_pred hcC--CCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHH
Q 000194 410 SAG--LSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQ 487 (1880)
Q Consensus 410 ~~~--ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~ 487 (1880)
..+ ........+..+....|.....+...+.+.+.. ..+++....++.
T Consensus 388 ~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~------------------------------~~~~~~~~~~~w 437 (526)
T PF01602_consen 388 ISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLED------------------------------ISSPEALAAAIW 437 (526)
T ss_dssp CTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTS------------------------------SSSHHHHHHHHH
T ss_pred hccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHH------------------------------hhHHHHHHHHHh
Confidence 432 556667778888888888777666666665531 113335678899
Q ss_pred hhcccccC-CC--cchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccC
Q 000194 488 TLARFNFK-GH--DLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSF 534 (1880)
Q Consensus 488 ~L~~~~~~-~~--~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~ 534 (1880)
++|+|... +. ....+++..+.. ....++.||.....++.+++...+
T Consensus 438 ilGEy~~~~~~~~~~~~~~~~l~~~-~~~~~~~vk~~ilt~~~Kl~~~~~ 486 (526)
T PF01602_consen 438 ILGEYGELIENTESAPDILRSLIEN-FIEESPEVKLQILTALAKLFKRNP 486 (526)
T ss_dssp HHHHHCHHHTTTTHHHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHHHHSC
T ss_pred hhcccCCcccccccHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHhhCC
Confidence 99998321 11 122333333333 333467888888778888776543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=0.00042 Score=89.90 Aligned_cols=207 Identities=19% Similarity=0.261 Sum_probs=131.5
Q ss_pred HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHH
Q 000194 856 TVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIR 935 (1880)
Q Consensus 856 ~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~ 935 (1880)
..+.+.|.+.+++-+. ......+.++-.|++.++.....++++.+|.++-..+..+...|...|..|-.+.. |.
T Consensus 696 ~~I~n~L~ds~qs~~~-~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~-----i~ 769 (1176)
T KOG1248|consen 696 DDIFNSLLDSFQSSSS-PAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGA-----IQ 769 (1176)
T ss_pred HHHHHHHHHHHhccch-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHH-----HH
Confidence 4566666666655432 34557788999999988866667888888887766677776677777665433332 22
Q ss_pred HhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhH---HHHH
Q 000194 936 KYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYV---LDIL 1012 (1880)
Q Consensus 936 ~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~---~~il 1012 (1880)
.+++.. +. .. .+.+.+|++.|.+-+. ++ . .+.++ ..+-
T Consensus 770 ~~~d~g-----------~e----------~~-----------~~~lnefl~~Isagl~---gd--~--~~~~as~Ivai~ 810 (1176)
T KOG1248|consen 770 SSLDDG-----------NE----------PA-----------SAILNEFLSIISAGLV---GD--S--TRVVASDIVAIT 810 (1176)
T ss_pred hhhccc-----------cc----------ch-----------HHHHHHHHHHHHhhhc---cc--H--HHHHHHHHHHHH
Confidence 221111 00 00 0112223333333211 11 1 11122 2222
Q ss_pred HHHHHHhcch-hhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc---ccccchhHhHHHHHHHhhCCCCHHHHHHH
Q 000194 1013 HTLEVFGGTL-DEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR---VQVTGHISSLVHHLKLVLDGKNDELRKDA 1088 (1880)
Q Consensus 1013 ~~l~~~g~~~-~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~---~~~~~~~~~ii~~l~~~l~~~~~~l~~~a 1088 (1880)
+.+..++..+ +++++.++..++-++..+ ..+++++|+..+..++.. ..+.+|.+.+++.+.+.+++....+|..+
T Consensus 811 ~il~e~~~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kv 889 (1176)
T KOG1248|consen 811 HILQEFKNILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKV 889 (1176)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3334455555 467777888888777554 788999999999999877 34788999999999998887778899999
Q ss_pred HHHHHHHHHHhcccc-ccchh
Q 000194 1089 VDALCCLAHALGEDF-TIFIP 1108 (1880)
Q Consensus 1089 l~~L~~l~~~~g~~f-~~fip 1108 (1880)
-..|-.|+...|.+. ..|.|
T Consensus 890 r~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 890 RLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHHHHhCHHHHHhhCH
Confidence 999999999988553 35665
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=0.00047 Score=89.52 Aligned_cols=773 Identities=14% Similarity=0.125 Sum_probs=372.6
Q ss_pred HHHHHHHHHhhhc--CCChhhhhhHHHHHhHhhccccCcchhH---HHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhh
Q 000194 67 MDQLYDRISGLLE--SNDAAENLGALRAIDELIDVALGENASK---VSKFSNYMRTVFEVKRDREILVLASKVLGHLARA 141 (1880)
Q Consensus 67 ~~~l~~~i~~l~~--s~~~~~r~~~i~ai~~Li~~~~~~~~~~---~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~ 141 (1880)
+.++.+.+..+++ +.+......++-+++.|+-.+.....+. .+-+...|.-.+ .+-+.+++.|..++..+...
T Consensus 91 Fs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~--h~~pkvRk~a~~~i~~VL~~ 168 (1176)
T KOG1248|consen 91 FSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAA--HKKPKVRKAAQRGIAAVLKG 168 (1176)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHcC
Confidence 3444455555554 6666677778888888876542222221 111222222222 34578888888888877664
Q ss_pred CCCCc-hhH--HHHHHHHHHhhhcCCCcchhHHH---HHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHH
Q 000194 142 GGAMT-ADE--VEFQVKMALDWLRGDRVEYRRFA---AVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAV 215 (1880)
Q Consensus 142 ~g~~~-~~~--v~~~~~~~~~~l~~~~~~~~R~a---A~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~ 215 (1880)
+...+ +++ .-...+.++..+...-.+..-.. .+.+|+.+....|. +.+..+-+.++..+...+..|+-.+.
T Consensus 169 p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~---~li~sl~e~lL~i~~~s~v~v~~~~~ 245 (1176)
T KOG1248|consen 169 PPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPR---PLIKSLCEVLLNITTESPVLVLLEVL 245 (1176)
T ss_pred CCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHhhcccchHHHHHHHH
Confidence 32211 111 11122333333321111111222 33444444444443 56677788888999999999988888
Q ss_pred HHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH----cchhhhHHHHHHHHHHHHHHhh
Q 000194 216 EALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLR----NTGEFMMSRYREVAEIVLRYLE 291 (1880)
Q Consensus 216 ~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~----~~~~~~~~~~~~i~~~ll~~~~ 291 (1880)
.++..++. .+.+..-......++..+...--+.+|.....+=+.++++.-. ...+......+.+....+.+..
T Consensus 246 q~l~~lf~---~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~ 322 (1176)
T KOG1248|consen 246 QCLHSLFK---KHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTILE 322 (1176)
T ss_pred HHHHHHHh---cCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHh
Confidence 88776653 2333344455666776666533333222222222223332221 2234444455555555566666
Q ss_pred cchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCC---cchHHHHHHHHHhhchhhhhhhhhHHHHHHH
Q 000194 292 HRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAE---RDSGFIALGEMAGALDGELFHYLPTITSHLR 368 (1880)
Q Consensus 292 ~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~---r~~a~~alg~la~~v~~~~~p~l~~i~~~l~ 368 (1880)
+..+.+-+++.+.+..+-..+.. +.+.+-...+..+.+.+- -..+++.+..+.+.+|+...||+-..++.|.
T Consensus 323 s~~~e~~q~a~q~l~~il~~sv~-----~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~ 397 (1176)
T KOG1248|consen 323 SLIEELVQAASQSLKEILKESVT-----VIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELSGPELTKTLEGLC 397 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcccCc-----ccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Confidence 77777767776666666544433 111111111111112221 2367888888888899876788877776665
Q ss_pred HhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHH--------------HHHHHHhCCCChHH
Q 000194 369 EAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA--------------LEQITVSIPSLLPT 434 (1880)
Q Consensus 369 ~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~l~~~--------------l~~i~~~~p~l~~~ 434 (1880)
.-=.........+.=+|+|.-..+.||.. +-.++|.=+.. .+.....+ |.-+.++|-++..+
T Consensus 398 ~lr~~~d~~~~~~ld~~IGSAV~AmGPe~---vL~~lpLnl~~-~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~s 473 (1176)
T KOG1248|consen 398 DLRASPDFFHKLQLDQCIGSAVRAMGPER---VLTILPLNLHA-ESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMS 473 (1176)
T ss_pred HhhcCCCCccHHHHHHHHHHHHHhhCHHH---HHHHcchhccc-cccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 42111111112356689999999999741 22222221111 11111111 11111111111111
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCC
Q 000194 435 IQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDE 514 (1880)
Q Consensus 435 i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~ 514 (1880)
++.+..+. . +. +. ... -+++|+.
T Consensus 474 l~~K~~~l----------~---------------------~~-~~-~~~-~~~tl~~----------------------- 496 (1176)
T KOG1248|consen 474 LQLKAKKL----------K---------------------EA-GS-QVS-LYDTLVD----------------------- 496 (1176)
T ss_pred HHHHHHhh----------h---------------------hc-cC-cHH-HHHHHHH-----------------------
Confidence 11111000 0 00 00 000 1111110
Q ss_pred ChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC----CCC
Q 000194 515 DKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG----NRG 590 (1880)
Q Consensus 515 ~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~----~~~ 590 (1880)
.++.|+.... .++. .....+..+.+.|+.. +.. .++.|..++.+|.. +..
T Consensus 497 ----------QLW~LLP~FC------~~P~--------Dl~~sF~~la~~l~~a-l~~-~~elr~~Ic~sL~~Lv~~n~~ 550 (1176)
T KOG1248|consen 497 ----------QLWSLLPGFC------NYPV--------DLAESFTDLAPILGAA-LLK-RPELRETICNSLRMLVEQNKP 550 (1176)
T ss_pred ----------HHHHhChhhh------CCCc--------cHHHHHHHHHHHHHHH-Hhc-chHhHHHHHHHHHHHHHcCCC
Confidence 0111110000 0000 0000011111111111 111 11333333333210 000
Q ss_pred -cc-----hhhc--cHhhHHHHHHHhCC------CCHhHHHHHHHHHH-hhhcCCcccccHHHHHHHHHHHHHHhcCCCC
Q 000194 591 -FD-----DFLA--QADCLSAIFAALND------EDFDVREYAISVAG-RLSEKNPAYVLPALRRHLIQLLTYLEQSSAD 655 (1880)
Q Consensus 591 -fd-----~~L~--~~~~l~~L~~~l~D------~~~~VR~~a~~~l~-~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~ 655 (1880)
-+ .++. ....++.+|..-.- .....|...+.++. ......|..+.-.+..-+........ +
T Consensus 551 ~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~----~ 626 (1176)
T KOG1248|consen 551 SSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLD----E 626 (1176)
T ss_pred cchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccch----h
Confidence 00 0000 01245555543221 23455666666555 55555665544444333322222111 1
Q ss_pred hHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHh--cCCchhhhHHhHHHH
Q 000194 656 NKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARV--GGFGMRQYISELMPL 733 (1880)
Q Consensus 656 ~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~--~g~~~~~~~~~l~p~ 733 (1880)
....-..+.+|..++...+-.-..++..+. .+.+..... .++.+..-+..-|+++... +......+++.+...
T Consensus 627 s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~----~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~ 701 (1176)
T KOG1248|consen 627 SVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENS----SSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNS 701 (1176)
T ss_pred hhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhcc----ccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Confidence 111122333444443322222222233333 333433332 3667777777888888776 233567788888888
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhcc
Q 000194 734 IVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQ 813 (1880)
Q Consensus 734 l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~ 813 (1880)
+.+.+++. +...+..++.+|..+.+..+.... .-.|.+++-++=.+ ++.+...|+.++.||-.+|++..+..
T Consensus 702 L~ds~qs~-~~~~~~~rl~~L~~L~~~~~~e~~--~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d---- 773 (1176)
T KOG1248|consen 702 LLDSFQSS-SSPAQASRLKCLKRLLKLLSAEHC--DLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLD---- 773 (1176)
T ss_pred HHHHHhcc-chHHHHHHHHHHHHHHHhccHHHH--HHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhc----
Confidence 88888865 345777889999999888762211 11234444333333 46678889999999988886322110
Q ss_pred ccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHH-HHHHHHHHHHhCCC
Q 000194 814 QLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKV-VGSLMFIFKSMGLG 892 (1880)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~-~~al~~i~~~~~~~ 892 (1880)
+.+.+ . ....++|. ..+... |-.++ .++.+. +-|+..|+...+..
T Consensus 774 --------------~g~e~--~-----------~~~lnefl-~~Isag----l~gd~--~~~~as~Ivai~~il~e~~~~ 819 (1176)
T KOG1248|consen 774 --------------DGNEP--A-----------SAILNEFL-SIISAG----LVGDS--TRVVASDIVAITHILQEFKNI 819 (1176)
T ss_pred --------------ccccc--h-----------HHHHHHHH-HHHHhh----hcccH--HHHHHHHHHHHHHHHHHHhcc
Confidence 00000 0 00011121 222222 21222 233333 66777777765544
Q ss_pred C-CCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHH-HHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHH
Q 000194 893 C-VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV-RQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLV 970 (1880)
Q Consensus 893 ~-~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~-~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i 970 (1880)
. .+++++++..+-..|....+.++..+...+..++..+ ..++.+|+|++++.+......... .....+..++
T Consensus 820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~------~~r~Kvr~Ll 893 (1176)
T KOG1248|consen 820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKI------KVRKKVRLLL 893 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhH------HHHHHHHHHH
Confidence 3 5788899998888888888888888888888888776 467889999999999874333220 1123567788
Q ss_pred HHHHHHhhh-hhhccchhhHHHHHHhc
Q 000194 971 QQLCLALND-EFRTHLPVILPCCIQVL 996 (1880)
Q Consensus 971 ~~l~~~l~~-~f~~yl~~l~p~ll~~l 996 (1880)
+.++..+|- ++++|+|...-.+|.-+
T Consensus 894 ekLirkfg~~eLe~~~pee~~klL~nI 920 (1176)
T KOG1248|consen 894 EKLIRKFGAEELESFLPEEDMKLLTNI 920 (1176)
T ss_pred HHHHHHhCHHHHHhhCHHHHHHHHHHH
Confidence 888877764 57777775555555444
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.9e-08 Score=127.41 Aligned_cols=438 Identities=17% Similarity=0.156 Sum_probs=256.0
Q ss_pred HHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHH
Q 000194 503 ARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIF 582 (1880)
Q Consensus 503 v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l 582 (1880)
+-..+.+-+.++++.+|..|..+++.+..+ .++..+++.+ ...+.|+++.||..++
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~-----------------------~~~~~l~~~v-~~ll~~~~~~VRk~A~ 135 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTP-----------------------EMAEPLIPDV-IKLLSDPSPYVRKKAA 135 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH-----------------------HHHHHHHHHH-HHHHHSSSHHHHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhccc-----------------------chhhHHHHHH-HHHhcCCchHHHHHHH
Confidence 334455667889999999888888876522 2233333333 3346899999999988
Q ss_pred HhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHH
Q 000194 583 SSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREES 662 (1880)
Q Consensus 583 ~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a 662 (1880)
.++......++.+....+++.+..++.|+++.|+.+|+.++..+ +.+|....+.+.+... .+..+-.. .++-.+...
T Consensus 136 ~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~-~L~~~l~~-~~~~~q~~i 212 (526)
T PF01602_consen 136 LALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIR-ILCQLLSD-PDPWLQIKI 212 (526)
T ss_dssp HHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHH-HHHHHHTC-CSHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHH-Hhhhcccc-cchHHHHHH
Confidence 87741111122222122688888999999999999999999998 5555432222333222 22222133 455555555
Q ss_pred HHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCC
Q 000194 663 AKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGA 742 (1880)
Q Consensus 663 ~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~ 742 (1880)
+++|..++...+..... ..+++.+.+.+.+. ++.|.-.++.++..+ .+. .+.+..+++.+.+.+.+.
T Consensus 213 l~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~-----~~~V~~e~~~~i~~l---~~~--~~~~~~~~~~L~~lL~s~- 279 (526)
T PF01602_consen 213 LRLLRRYAPMEPEDADK--NRIIEPLLNLLQSS-----SPSVVYEAIRLIIKL---SPS--PELLQKAINPLIKLLSSS- 279 (526)
T ss_dssp HHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH---SSS--HHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHhcccCChhhhhH--HHHHHHHHHHhhcc-----ccHHHHHHHHHHHHh---hcc--hHHHHhhHHHHHHHhhcc-
Confidence 55555444322211100 45777777777753 566665555444433 222 226778899999999854
Q ss_pred chhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccc
Q 000194 743 AVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEV 822 (1880)
Q Consensus 743 ~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~ 822 (1880)
+...|-.|+.+|..++......+. .+. ..+..+..+.+..+|..++.++..++. +.
T Consensus 280 ~~nvr~~~L~~L~~l~~~~~~~v~----~~~---~~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~--------------- 335 (526)
T PF01602_consen 280 DPNVRYIALDSLSQLAQSNPPAVF----NQS---LILFFLLYDDDPSIRKKALDLLYKLAN--ES--------------- 335 (526)
T ss_dssp SHHHHHHHHHHHHHHCCHCHHHHG----THH---HHHHHHHCSSSHHHHHHHHHHHHHH----HH---------------
T ss_pred cchhehhHHHHHHHhhcccchhhh----hhh---hhhheecCCCChhHHHHHHHHHhhccc--cc---------------
Confidence 677999999999999877522221 111 223344555678999999998877641 00
Q ss_pred cccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhH
Q 000194 823 TRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLP 902 (1880)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip 902 (1880)
-...+++.|++-+++.+..+....++.++..+.... .+..+.++.
T Consensus 336 -------------------------------n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~----~~~~~~~v~ 380 (526)
T PF01602_consen 336 -------------------------------NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKF----PPDAEWYVD 380 (526)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH----GSSHHHHHH
T ss_pred -------------------------------chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhcc----CchHHHHHH
Confidence 013466777777754433346677888888887766 345677788
Q ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhh
Q 000194 903 DLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFR 982 (1880)
Q Consensus 903 ~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~ 982 (1880)
.+++.+....+.....+...+..++....+.-...++.++..+ ..... ..++..+.++....++.+.
T Consensus 381 ~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l----~~~~~---------~~~~~~~~wilGEy~~~~~ 447 (526)
T PF01602_consen 381 TLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELL----EDISS---------PEALAAAIWILGEYGELIE 447 (526)
T ss_dssp HHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHH----TSSSS---------HHHHHHHHHHHHHHCHHHT
T ss_pred HHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHH----HHhhH---------HHHHHHHHhhhcccCCccc
Confidence 8888888766655655555555555432222222334443333 32221 1345555555554544444
Q ss_pred c--cchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchh--hhhhhhHHHHHHhhc-CCCcHHHHHHHHHHHHhh
Q 000194 983 T--HLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLD--EHMHLLLPALIRLFK-VDAPVDIRRAAIETLTRL 1056 (1880)
Q Consensus 983 ~--yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~--~~~~~ilp~l~~~l~-~~~~~~vr~~ai~~l~~l 1056 (1880)
. ..+.++..+.+.+.+ ....+...++.++..+....+ +....+++.+.+... ++.+.+||..|...+.-+
T Consensus 448 ~~~~~~~~~~~l~~~~~~----~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 448 NTESAPDILRSLIENFIE----ESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp TTTHHHHHHHHHHHHHTT----SHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhhcc----ccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 4 566666666666643 134466778888877654433 222355555555554 245788888887766544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.8e-06 Score=105.90 Aligned_cols=472 Identities=12% Similarity=0.040 Sum_probs=257.2
Q ss_pred HHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHH
Q 000194 155 KMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRV 234 (1880)
Q Consensus 155 ~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~ 234 (1880)
..+-+-|.+.....+|.+--.++..+..| . -+..+++.+++.+..++..+|+-..-.+..+.+ ..+
T Consensus 35 ~ELr~~L~s~~~~~kk~alKkvIa~mt~G--~----DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~--------~~p 100 (746)
T PTZ00429 35 AELQNDLNGTDSYRKKAAVKRIIANMTMG--R----DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTAR--------LQP 100 (746)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCC--C----CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc--------cCh
Confidence 33334444444445556655677766665 2 445677777788888899999988876655422 223
Q ss_pred HHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChh
Q 000194 235 QWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRD 314 (1880)
Q Consensus 235 ~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~ 314 (1880)
+..-.....+..-+.+++ ..+|--|+..++.+ ... ...+.+...+...+.++++.||++|+-++..+-..+++
T Consensus 101 elalLaINtl~KDl~d~N-p~IRaLALRtLs~I---r~~---~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe 173 (746)
T PTZ00429 101 EKALLAVNTFLQDTTNSS-PVVRALAVRTMMCI---RVS---SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ 173 (746)
T ss_pred HHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHcC---CcH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc
Confidence 334455666677777765 34455544444332 111 22334555666777899999999999999998877775
Q ss_pred hHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHH
Q 000194 315 RFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1880)
Q Consensus 315 ~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~ 392 (1880)
.+.+ ....+.|...|.+.+ ....|+.++-.+...-++.+. .....+..+...+.
T Consensus 174 lv~~---~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~-------------------- 229 (746)
T PTZ00429 174 LFYQ---QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLP-------------------- 229 (746)
T ss_pred cccc---cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhh--------------------
Confidence 4322 123334444454322 345566666665443332110 01111111111110
Q ss_pred hCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCcc
Q 000194 393 MGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQ 472 (1880)
Q Consensus 393 ~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1880)
++.+.. +-.+++.+.. +. |
T Consensus 230 ---e~~EW~----------------------------------Qi~IL~lL~~------y~---P--------------- 248 (746)
T PTZ00429 230 ---ECNEWG----------------------------------QLYILELLAA------QR---P--------------- 248 (746)
T ss_pred ---cCChHH----------------------------------HHHHHHHHHh------cC---C---------------
Confidence 011111 1112222210 00 0
Q ss_pred ccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCcccccccc
Q 000194 473 VSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGG 552 (1880)
Q Consensus 473 ~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 552 (1880)
. +++. +. .+.+.+.+.+.+.++.|.-+|++++..+...... .
T Consensus 249 -~---~~~e---~~---------------~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~----------------~ 290 (746)
T PTZ00429 249 -S---DKES---AE---------------TLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ----------------E 290 (746)
T ss_pred -C---CcHH---HH---------------HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH----------------H
Confidence 0 0000 11 1223345667777888887777766655321000 0
Q ss_pred chhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcc
Q 000194 553 KRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPA 632 (1880)
Q Consensus 553 ~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~ 632 (1880)
...+.+..+...|+. +...++++|..++..+..-..-.+.+-++ .++..|...+|+.+ ||...+++|-.++...
T Consensus 291 ~~~~~~~rl~~pLv~--L~ss~~eiqyvaLr~I~~i~~~~P~lf~~-~~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane~-- 364 (746)
T PTZ00429 291 LIERCTVRVNTALLT--LSRRDAETQYIVCKNIHALLVIFPNLLRT-NLDSFYVRYSDPPF-VKLEKLRLLLKLVTPS-- 364 (746)
T ss_pred HHHHHHHHHHHHHHH--hhCCCccHHHHHHHHHHHHHHHCHHHHHH-HHHhhhcccCCcHH-HHHHHHHHHHHHcCcc--
Confidence 011222222233333 24567889988888763100001222222 35666677788776 8999999999988644
Q ss_pred cccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHH
Q 000194 633 YVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTV 712 (1880)
Q Consensus 633 ~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l 712 (1880)
.+ ..++.++...... .+...+..+.+.+|.++...+. ....++..|+..+.+. ..+...++..+
T Consensus 365 Nv----~~IL~EL~eYa~d--~D~ef~r~aIrAIg~lA~k~~~----~a~~cV~~Ll~ll~~~------~~~v~e~i~vi 428 (746)
T PTZ00429 365 VA----PEILKELAEYASG--VDMVFVVEVVRAIASLAIKVDS----VAPDCANLLLQIVDRR------PELLPQVVTAA 428 (746)
T ss_pred cH----HHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHhcCC------chhHHHHHHHH
Confidence 22 2233333333322 4667888999999999987654 3566777777777653 22344556677
Q ss_pred HHHHHhcCCchhhhHHhHHHHHHHHH--hcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHH
Q 000194 713 GDLARVGGFGMRQYISELMPLIVEAL--LDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWST 790 (1880)
Q Consensus 713 ~~La~~~g~~~~~~~~~l~p~l~~~l--~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~v 790 (1880)
..+.+..+.. .+++.++..+ .+-.+.+.|.+.+|.||..+..... .|.++..+++-+.. ++..|
T Consensus 429 k~IlrkyP~~------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-------a~~~L~~~i~~f~~-E~~~V 494 (746)
T PTZ00429 429 KDIVRKYPEL------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-------GKDIIQRFIDTIME-HEQRV 494 (746)
T ss_pred HHHHHHCccH------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-------HHHHHHHHHhhhcc-CCHHH
Confidence 7776654442 1445555443 2334567888889999998765432 35677666655543 36789
Q ss_pred HHHHHHHHHHHcccCc
Q 000194 791 RREVLKVLGIMGALDP 806 (1880)
Q Consensus 791 r~~~l~~lg~lgaldp 806 (1880)
|.+.+.+...+-...|
T Consensus 495 qlqlLta~vKlfl~~p 510 (746)
T PTZ00429 495 QLAILSAAVKMFLRDP 510 (746)
T ss_pred HHHHHHHHHHHHhcCc
Confidence 9888887776654333
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=0.00059 Score=86.87 Aligned_cols=297 Identities=15% Similarity=0.123 Sum_probs=166.7
Q ss_pred hHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCc---cc
Q 000194 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE---RL 676 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~---~~ 676 (1880)
++.-++-.++++.--.|..|++.++.++...-. -...+++.+--..+.+.++ .+--+|.+|+-+|..++++.. ..
T Consensus 463 lv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~-d~~~l~~ale~t~~~l~~d-~~lPV~VeAalALq~fI~~~~~~~e~ 540 (1010)
T KOG1991|consen 463 LVNHVFPEFQSPYGYLRARACWVLSQFSSIDFK-DPNNLSEALELTHNCLLND-NELPVRVEAALALQSFISNQEQADEK 540 (1010)
T ss_pred HHHHhhHhhcCchhHHHHHHHHHHHHHHhccCC-ChHHHHHHHHHHHHHhccC-CcCchhhHHHHHHHHHHhcchhhhhh
Confidence 345566677888888999999999999853311 1233555555555666656 677789999999999999876 44
Q ss_pred ccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHH----Hhc-----CCchhhH
Q 000194 677 IRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEA----LLD-----GAAVTKR 747 (1880)
Q Consensus 677 ~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~----l~d-----~~~~~~r 747 (1880)
+.|+++++|+-++...++- +.+.. -.++..+....++++.||..++...+... +++ ..+.++-
T Consensus 541 ~~~hvp~~mq~lL~L~ne~-----End~L---t~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~ 612 (1010)
T KOG1991|consen 541 VSAHVPPIMQELLKLSNEV-----ENDDL---TNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKA 612 (1010)
T ss_pred HhhhhhHHHHHHHHHHHhc-----chhHH---HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHH
Confidence 9999999999999998864 23333 33556677778889999988776666554 442 1122233
Q ss_pred HHHHHHHH---HHHhhcCcccccC-CcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCccccc
Q 000194 748 EVAVSTLG---QVVQSTGYVITPY-NEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVT 823 (1880)
Q Consensus 748 ~~Al~~Lg---~l~~~~~~~i~p~-~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~ 823 (1880)
.+|.+.|. .+..+....-..+ ...|.+++.+..+|+++- .++-++++..+.-+....|
T Consensus 613 iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i-~dfyeE~~ei~~~~t~~~~----------------- 674 (1010)
T KOG1991|consen 613 IAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDI-TDFYEELLEIVSSLTFLSK----------------- 674 (1010)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhhhhhhhc-----------------
Confidence 34433333 3333322210000 112445555555555442 2344444333222111000
Q ss_pred ccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCC--CCCcchhh
Q 000194 824 RAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGC--VPYLPKVL 901 (1880)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~--~~~l~~ii 901 (1880)
.+.. . ...++..++..++|+- ..+.+.+.-++-+++..-++.+ .|...+++
T Consensus 675 -----------~Isp---~------------mW~ll~li~e~~~~~~-~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il 727 (1010)
T KOG1991|consen 675 -----------EISP---I------------MWGLLELILEVFQDDG-IDYFTDMMPALHNYVTYGTPSLLSNPDYLQIL 727 (1010)
T ss_pred -----------ccCH---H------------HHHHHHHHHHHHhhhh-HHHHHHHHHHHhhheeeCchhhhccchHHHHH
Confidence 0100 0 1244555666666654 2344444444444432222221 24334444
Q ss_pred HHHHHHHhcC---CcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcC
Q 000194 902 PDLFHTVRTC---DDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSS 951 (1880)
Q Consensus 902 p~ll~~l~~~---~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~ 951 (1880)
-.+...+-++ .++=.+.++..+..++-.++..+..|+|..+.+.......
T Consensus 728 ~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~ 780 (1010)
T KOG1991|consen 728 LEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTR 780 (1010)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhc
Confidence 4444433222 2223455677777888777777778888888888777665
|
|
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=0.00031 Score=87.13 Aligned_cols=683 Identities=16% Similarity=0.209 Sum_probs=358.6
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcC-CCcchhHHHHHHHHHHHHh-h---
Q 000194 109 SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRG-DRVEYRRFAAVLILKEMAE-N--- 183 (1880)
Q Consensus 109 ~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~-~~~~~~R~aA~~~l~~la~-~--- 183 (1880)
....+||.+.+. .|+.+++.|-++|..+....| ..- .++..+.+ .-+...|+||...++--.. +
T Consensus 5 e~l~~~l~qTl~--pdps~rk~aEr~L~~~e~q~~-y~l--------~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~ 73 (960)
T KOG1992|consen 5 ETLANYLLQTLS--PDPSVRKPAERALRSLEGQQN-YPL--------LLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIP 73 (960)
T ss_pred HHHHHHHHhcCC--CCCccCchHHHHHHHhccCCC-chH--------HHHHHHhccCcChhHHHHHHHHHHHHHHhccCc
Confidence 346778888774 589999999999876654322 111 12223333 3367889999999988765 2
Q ss_pred ---cCcc-chhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHH
Q 000194 184 ---ASTV-FNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHG 259 (1880)
Q Consensus 184 ---~p~~-l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 259 (1880)
.|.- ...--..|...|+..|-.....|+..=.+|+. .+.+++ .++--+.+++.++..+++.+ -.+..|
T Consensus 74 ~~~~~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~----~Ig~~D---FP~kWptLl~dL~~~ls~~D-~~~~~g 145 (960)
T KOG1992|consen 74 AEDSPIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALS----LIGKRD---FPDKWPTLLPDLVARLSSGD-FNVING 145 (960)
T ss_pred CCCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHH----HHhccc---cchhhHHHHHHHHhhccccc-hHHHHH
Confidence 2222 23455667777888887777777766555554 455443 22334678888999888763 455556
Q ss_pred HHHHHHHHHHc------ch------hhhHHHHHHHHHHHHH----Hhh-c-chhH-------HHHHHHHHhHhHhhhChh
Q 000194 260 SLLAVGELLRN------TG------EFMMSRYREVAEIVLR----YLE-H-RDRL-------VRLSITSLLPRIAHFLRD 314 (1880)
Q Consensus 260 al~~l~~ll~~------~~------~~~~~~~~~i~~~ll~----~~~-~-~~~~-------Vr~~~~~~i~~la~~~~~ 314 (1880)
.+..-..+... +. .+...++.+-+..+++ ..+ + .+.. |....+.+.-++..-+-.
T Consensus 146 VL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiP 225 (960)
T KOG1992|consen 146 VLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIP 225 (960)
T ss_pred HHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccch
Confidence 55444444331 01 1112222222222222 111 1 1111 111122233333333445
Q ss_pred hHHHHHHHHHHHHHHHhhcC--C-----C--------CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCC
Q 000194 315 RFVTNYLKICMNHILTVLRI--P-----A--------ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPS 379 (1880)
Q Consensus 315 ~f~~~yl~~~~~~Ll~~L~~--~-----~--------~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~ 379 (1880)
+|.|..++.-|+...+.|+. + + .|...++.+..-+...++++.||+++++...+.-|..-...++
T Consensus 226 EFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~k 305 (960)
T KOG1992|consen 226 EFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTK 305 (960)
T ss_pred HHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCcc
Confidence 67777889999988888762 1 1 1456777777778888888999999999999998865444443
Q ss_pred -----chHHHHHHHHHHHhCC--Cch--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC
Q 000194 380 -----LEALACVGNIARAMGP--VME--PHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKS 450 (1880)
Q Consensus 380 -----~~a~~~l~~la~~~g~--~~~--~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~ 450 (1880)
..|++++..+++.-.- -|. ..+..+.+.+.-..+ .+++...++.+. .-++.+..-+.|
T Consensus 306 yD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~--~lR~eDeElFED----------~pleYiRRDlEG- 372 (960)
T KOG1992|consen 306 YDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNL--ILREEDEELFED----------NPLEYIRRDLEG- 372 (960)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhccccc--ccchhhHHHhcc----------CHHHHHHHhccc-
Confidence 2467777777764211 010 111111111110000 001111111110 011122111111
Q ss_pred CCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc--ccCCCc---chhhHHHHHhhhccCCChHH--HHHHH
Q 000194 451 HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF--NFKGHD---LLEFARDSVVLYLDDEDKAT--RKDAA 523 (1880)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~--~~~~~~---l~~~v~~~~~~~l~~~~~~V--R~aAa 523 (1880)
+|.+ .....|++.++.+ .|.+.. +..++...+..|..+|+.+- ...|.
T Consensus 373 -----------------------sDvd--TRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~ai 427 (960)
T KOG1992|consen 373 -----------------------SDVD--TRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAI 427 (960)
T ss_pred -----------------------CCcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhh
Confidence 1111 1346688888876 454422 22344444555666554322 22233
Q ss_pred HHHHHhhhccCCCccccccCCccccccccchhHH----HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccH-
Q 000194 524 LCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL----IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQA- 598 (1880)
Q Consensus 524 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~- 598 (1880)
.-|..+..+.-. .++....+.. ..++ ...+++.|....+ .+-|-++..+++-.- .|-..+..+
T Consensus 428 yL~talaik~~t-------~~~Gvtstn~-lvdv~~Ff~~~ilp~L~s~~v-n~~pilka~aIKy~~---~FR~ql~~~~ 495 (960)
T KOG1992|consen 428 YLVTALAIKGQT-------AKHGVTSTNE-LVDVVDFFANQILPDLLSPNV-NEFPILKADAIKYIY---TFRNQLGKEH 495 (960)
T ss_pred hhhHHHHhhcch-------hhcceeeccc-cccHHHHHHHHhhHHhccCcc-ccccchhhcccceee---eecccCChHH
Confidence 222222222100 0000001111 1222 2233333332111 233555555555432 333334322
Q ss_pred --hhHHHHHHHhCCCCHhHHHHHHHHHHhhhcC---------CcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHH
Q 000194 599 --DCLSAIFAALNDEDFDVREYAISVAGRLSEK---------NPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLG 667 (1880)
Q Consensus 599 --~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~---------~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~ 667 (1880)
..++.+...+.-+++.|-.-|...+.++-.. .|..+.|+....+..++..+... ....-+...+++-
T Consensus 496 lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p--~~~EneylmKaIm 573 (960)
T KOG1992|consen 496 LMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLP--GKAENEYLMKAIM 573 (960)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCC--cccccHHHHHHHH
Confidence 3567777788888888887777777775321 12334566666666666555433 2244556778888
Q ss_pred HHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcC----CchhhhHHhHHHHHHHHHhcCCc
Q 000194 668 CLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG----FGMRQYISELMPLIVEALLDGAA 743 (1880)
Q Consensus 668 ~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g----~~~~~~~~~l~p~l~~~l~d~~~ 743 (1880)
.++.-..+.+.|+.+.++..|.+.+...+....+|..-...++++|.+....+ ..+..+...++|.+...|+.. =
T Consensus 574 Rii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eD-I 652 (960)
T KOG1992|consen 574 RIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSED-I 652 (960)
T ss_pred HHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHH-H
Confidence 88888888999999998888887765432222466666677788887776443 346788889999999988732 1
Q ss_pred hhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHH---HHHHHHHHcccCccchhhccccCCCcc
Q 000194 744 VTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRRE---VLKVLGIMGALDPHAHKRNQQLSGSHG 820 (1880)
Q Consensus 744 ~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~---~l~~lg~lgaldp~~~~~~~~~~~~~~ 820 (1880)
.+----++.-++.+++..+..+- ..|..+++.|+ .+..|+.+.. .++++..+---+|...
T Consensus 653 ~EfiPYvfQlla~lve~~~~~ip--~~~~~l~~~lL----sp~lW~r~gNipalvrLl~aflk~g~~~~----------- 715 (960)
T KOG1992|consen 653 QEFIPYVFQLLAVLVEHSSGTIP--DSYSPLFPPLL----SPNLWKRSGNIPALVRLLQAFLKTGSQIV----------- 715 (960)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHhc----CHHHHhhcCCcHHHHHHHHHHHhcCchhh-----------
Confidence 12223568888998888776321 11223444443 3444443322 2222222100000000
Q ss_pred cccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCC-CCCCcch
Q 000194 821 EVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG-CVPYLPK 899 (1880)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~-~~~~l~~ 899 (1880)
. ..+ ....++..+-++...++. +|| ...-+..|+....+. ..||+.+
T Consensus 716 -------------~---------------~~~-~l~~iLGifqkLiaSka~-Dh~--GF~LLn~i~~~~~~~~~~py~k~ 763 (960)
T KOG1992|consen 716 -------------E---------------AAD-KLSGILGIFQKLIASKAN-DHH--GFYLLNTIIESIPPNELAPYMKQ 763 (960)
T ss_pred -------------c---------------ccc-cchhHHHHHHHHhcCccc-chh--HHHHHHHHHhcCCHhhhhHHHHH
Confidence 0 000 012334444444444443 233 556677777776554 4689999
Q ss_pred hhHHHHHHHhcCC
Q 000194 900 VLPDLFHTVRTCD 912 (1880)
Q Consensus 900 iip~ll~~l~~~~ 912 (1880)
|.-.+++.++++.
T Consensus 764 i~~llf~Rlqnsk 776 (960)
T KOG1992|consen 764 IFGLLFQRLQNSK 776 (960)
T ss_pred HHHHHHHHHhccC
Confidence 9999999998874
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=0.00084 Score=86.17 Aligned_cols=202 Identities=17% Similarity=0.161 Sum_probs=117.4
Q ss_pred hchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 000194 190 VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLR 269 (1880)
Q Consensus 190 ~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~ 269 (1880)
.++..+++.++.+++|.+..||+.|++.++.... |.+ ......++..+++-+.-.++....|||+++|++|..
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~----rlp---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~ 409 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTS----RLP---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELAL 409 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHc----cCc---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh
Confidence 4677888999999999999999999998886543 333 223344444444422222234678999999999986
Q ss_pred cchhhhHHHHHHHHHHHHHHh--------hcchhHHHHHHHHHhHhHhh-hChhhHHHHHHHHHHHHHHHhhcCC---CC
Q 000194 270 NTGEFMMSRYREVAEIVLRYL--------EHRDRLVRLSITSLLPRIAH-FLRDRFVTNYLKICMNHILTVLRIP---AE 337 (1880)
Q Consensus 270 ~~~~~~~~~~~~i~~~ll~~~--------~~~~~~Vr~~~~~~i~~la~-~~~~~f~~~yl~~~~~~Ll~~L~~~---~~ 337 (1880)
-. =.+...++++++.++..+ -.....||.+++-++=++++ |.+.+ .++|+..+.+.|+..--.+ .-
T Consensus 410 rG-lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~-l~p~l~~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 410 RG-LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSD-LKPVLQSLASALLIVALFDREVNC 487 (1133)
T ss_pred cC-CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhh-hhHHHHHHHHHHHHHHhcCchhhH
Confidence 32 233346666776665443 12356799988766555554 55544 4557787887776543222 23
Q ss_pred cchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 000194 338 RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFS 410 (1880)
Q Consensus 338 r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~ 410 (1880)
|-+|..|+-+....-|. .|+--+++..+- +..- ..--.|+..++..+. .|..|...+++.++.
T Consensus 488 RRAAsAAlqE~VGR~~n--~p~Gi~Lis~~d-y~sV------~~rsNcy~~l~~~ia-~~~~y~~~~f~~L~t 550 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGN--FPHGISLISTID-YFSV------TNRSNCYLDLCVSIA-EFSGYREPVFNHLLT 550 (1133)
T ss_pred hHHHHHHHHHHhccCCC--CCCchhhhhhcc-hhhh------hhhhhHHHHHhHHHH-hhhhHHHHHHHHHHh
Confidence 66666666664433332 244433332221 1100 012246666555542 345566666666654
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-07 Score=108.66 Aligned_cols=189 Identities=14% Similarity=0.139 Sum_probs=138.7
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHH
Q 000194 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1880)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1880)
.+.|++..||..++.+|.. +..++.+..+..+++|+++.+|..++.+||.+...... ..+.+ ..|..
T Consensus 31 ~L~d~d~~vR~~A~~aL~~-------~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a~-~~L~~ 97 (280)
T PRK09687 31 LLDDHNSLKRISSIRVLQL-------RGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNVF-NILNN 97 (280)
T ss_pred HHhCCCHHHHHHHHHHHHh-------cCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHHH-HHHHH
Confidence 3589999999999999952 12245677788888999999999999999998753211 11222 22222
Q ss_pred -HhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH
Q 000194 649 -LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI 727 (1880)
Q Consensus 649 -l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~ 727 (1880)
+.++ +++.+|..|+..||.+..... .+.+..+..+...+.++ ++.|+..++.++|.+..
T Consensus 98 l~~~D-~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~-----~~~VR~~a~~aLg~~~~---------- 157 (280)
T PRK09687 98 LALED-KSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDK-----STNVRFAVAFALSVIND---------- 157 (280)
T ss_pred HHhcC-CCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCC-----CHHHHHHHHHHHhccCC----------
Confidence 2445 688999999999999853321 12345666677777764 78899888888875421
Q ss_pred HhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 728 SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 728 ~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
+..++.++..+.|. +..+|..|+.+||.+ +. ..|...+.|+..|.+ .++.||.+++..||.+|
T Consensus 158 ~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~----~~------~~~~~~~~L~~~L~D-~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 158 EAAIPLLINLLKDP-NGDVRNWAAFALNSN----KY------DNPDIREAFVAMLQD-KNEEIRIEAIIGLALRK 220 (280)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHhcC----CC------CCHHHHHHHHHHhcC-CChHHHHHHHHHHHccC
Confidence 46789999999987 568999999999986 11 236788889988864 47899999999998865
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3e-07 Score=107.03 Aligned_cols=239 Identities=15% Similarity=0.107 Sum_probs=148.9
Q ss_pred HHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHH
Q 000194 482 VQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEEL 561 (1880)
Q Consensus 482 ~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 561 (1880)
...|+..|+.+. . +-+...+..++.++++.+|..|+.+++++-.... ....+
T Consensus 40 R~~A~~aL~~~~---~---~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~----------------------~~~~a 91 (280)
T PRK09687 40 RISSIRVLQLRG---G---QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR----------------------CQDNV 91 (280)
T ss_pred HHHHHHHHHhcC---c---chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc----------------------chHHH
Confidence 344666666552 1 1233344566778888888888888777532110 01233
Q ss_pred HHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHH
Q 000194 562 VEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRH 641 (1880)
Q Consensus 562 l~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~ 641 (1880)
++.|......|+++.||.+++.+|+.... ......+..+..+..++.|++..||..++..||.+.. + ...|
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~-~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~-~ai~----- 162 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCK-KNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E-AAIP----- 162 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccc-cccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-HHHH-----
Confidence 44444445688888888888888863110 0001124456667777888888888888888876542 1 1112
Q ss_pred HHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 000194 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF 721 (1880)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~ 721 (1880)
.++..+. + +++.+|..|+..||.+.. --+.+.+.|+..+.+. +..|+..++.++|.+..
T Consensus 163 --~L~~~L~-d-~~~~VR~~A~~aLg~~~~--------~~~~~~~~L~~~L~D~-----~~~VR~~A~~aLg~~~~---- 221 (280)
T PRK09687 163 --LLINLLK-D-PNGDVRNWAAFALNSNKY--------DNPDIREAFVAMLQDK-----NEEIRIEAIIGLALRKD---- 221 (280)
T ss_pred --HHHHHhc-C-CCHHHHHHHHHHHhcCCC--------CCHHHHHHHHHHhcCC-----ChHHHHHHHHHHHccCC----
Confidence 2222233 3 567788888888887711 1235666677777764 77888888888776422
Q ss_pred chhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000194 722 GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1880)
Q Consensus 722 ~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg 799 (1880)
+..+|.+++.+.+.. .|..|+.+||.+ |. |..++.|.++++...+..+++.++.++.
T Consensus 222 ------~~av~~Li~~L~~~~---~~~~a~~ALg~i----g~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 222 ------KRVLSVLIKELKKGT---VGDLIIEAAGEL----GD--------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred ------hhHHHHHHHHHcCCc---hHHHHHHHHHhc----CC--------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 367888888887642 677788888875 21 4677788888864557788887776653
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=0.00081 Score=86.30 Aligned_cols=443 Identities=17% Similarity=0.177 Sum_probs=220.6
Q ss_pred hhcCccchhchHHHHHHHHHHhcCCchhHH--HHHHHHHHHHHHHHhhhchh-------hHHHHHHHHHHHHHhh-ccCC
Q 000194 182 ENASTVFNVHVAEFVDAIWVALRDPTLAVR--ERAVEALRACLRVIEKRETR-------WRVQWYYRMFEATQDG-LGRN 251 (1880)
Q Consensus 182 ~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR--~aA~~al~~~~~~i~~r~~~-------~~~~~~~~~l~~~~~~-l~~~ 251 (1880)
..-|..+-|+++.+++.+..-+++.....- ..+.+-+-.+..+ |... .....+..++.-+... =++.
T Consensus 60 QeqP~LLDp~L~~~v~~L~~~v~~~~~d~~~~~l~~e~ly~l~kv---rgyK~v~k~fPh~V~~Le~il~lL~~~npss~ 136 (1133)
T KOG1943|consen 60 QEQPHLLDPHLESIVPNLLDIVRKFTIDLGELHLAFEYLYILCKV---RGYKAVLKLFPHQVSDLEPILDLLERQNPSSF 136 (1133)
T ss_pred hhchhhccchHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh---ccchhhHHhCCcHHHHHHHHHHHHhccCcchH
Confidence 347889999999999999888887765554 2233322222221 2111 1223344444444310 0112
Q ss_pred CChhHHHHHHHHHHHHHHcchhh--------hHH--HHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH
Q 000194 252 APVHSIHGSLLAVGELLRNTGEF--------MMS--RYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL 321 (1880)
Q Consensus 252 ~~~~~~~~al~~l~~ll~~~~~~--------~~~--~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl 321 (1880)
.+|+.+..-++.|..++-+.-++ ..| .+..++.....++.... ..|++++-+++.+-. .++-. .++
T Consensus 137 ~~~~~ryilLlWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~~-~~r~~aalllsk~~s--R~D~~-~~~ 212 (1133)
T KOG1943|consen 137 SDWETRYILLLWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLISSG-ILRRSAALLLSKLFS--RTDVK-DLL 212 (1133)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHcc--cccHH-HHH
Confidence 35899999999999887643221 112 24445544444444444 677777766665431 11111 123
Q ss_pred HHHHHHHHHhhcCCCCc----chHHHHHHHHHhhchh-hhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHH-----
Q 000194 322 KICMNHILTVLRIPAER----DSGFIALGEMAGALDG-ELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIAR----- 391 (1880)
Q Consensus 322 ~~~~~~Ll~~L~~~~~r----~~a~~alg~la~~v~~-~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~----- 391 (1880)
-..+.+++.+-.....+ ..-+.++..+-..... +..||.+.....+-.+-...+.+ ...-.++-.+..
T Consensus 213 ~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~--~llrKllvKl~QRiGlv 290 (1133)
T KOG1943|consen 213 LSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQ--SLLRKLLVKLVQRIGLV 290 (1133)
T ss_pred HHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccH--hHHHHHHHHHHHHhhhe
Confidence 44444444333222222 1222333333222222 23344444443332221111100 000011111111
Q ss_pred ---------------------------------------HhCCCchHHHHHHHHHHHhcC-CCHH-----HHHHHHHHHH
Q 000194 392 ---------------------------------------AMGPVMEPHVRGLLDIMFSAG-LSTT-----LVDALEQITV 426 (1880)
Q Consensus 392 ---------------------------------------~~g~~~~~~l~~ll~~l~~~~-ls~~-----l~~~l~~i~~ 426 (1880)
.-|++...+++.+++.|++.- -++. ....+..+..
T Consensus 291 ~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~ 370 (1133)
T KOG1943|consen 291 SLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTS 370 (1133)
T ss_pred ecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHc
Confidence 123344456677777777541 1222 1223444445
Q ss_pred hCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcch---hhH
Q 000194 427 SIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLL---EFA 503 (1880)
Q Consensus 427 ~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~---~~v 503 (1880)
..| +.+.+..++.+... +. | .++...-+.||-+|+++...|--+. +-|
T Consensus 371 rlp---~~Lad~vi~svid~-----~~---p------------------~e~~~aWHgacLaLAELA~rGlLlps~l~dV 421 (1133)
T KOG1943|consen 371 RLP---PELADQVIGSVIDL-----FN---P------------------AEDDSAWHGACLALAELALRGLLLPSLLEDV 421 (1133)
T ss_pred cCc---HHHHHHHHHHHHHh-----cC---c------------------CCchhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 555 33334333332211 10 0 0112233566777777654442221 222
Q ss_pred HHHHhhhccC--------CChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCCh
Q 000194 504 RDSVVLYLDD--------EDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADV 575 (1880)
Q Consensus 504 ~~~~~~~l~~--------~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~ 575 (1880)
-..+..-+.. ....||.+|.-.|+.+... .+ . ....+++..+...|+.+++.|++.
T Consensus 422 vplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra-ys--------------~-~~l~p~l~~L~s~LL~~AlFDrev 485 (1133)
T KOG1943|consen 422 VPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARA-YS--------------P-SDLKPVLQSLASALLIVALFDREV 485 (1133)
T ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhc-CC--------------h-hhhhHHHHHHHHHHHHHHhcCchh
Confidence 2222222221 2347999999888876632 11 0 113456777888899999999999
Q ss_pred hHHHHHHHhccCC-CCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCC
Q 000194 576 TVRHSIFSSLYGN-RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSA 654 (1880)
Q Consensus 576 ~vR~~~l~~l~~~-~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~ 654 (1880)
.+|.++..+|.+. .++.. -|.=++ |....++-+...|..+..-+++-...+|.+..|.++..+... +.+.
T Consensus 486 ncRRAAsAAlqE~VGR~~n---~p~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~K---v~HW-- 556 (1133)
T KOG1943|consen 486 NCRRAASAALQENVGRQGN---FPHGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKK---VCHW-- 556 (1133)
T ss_pred hHhHHHHHHHHHHhccCCC---CCCchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcc---cccc--
Confidence 9999998888421 12111 011112 122223334455777777777777777777767666543322 4454
Q ss_pred ChHhHHHHHHHHHHHHHhCccccc-CchHHHHHH
Q 000194 655 DNKCREESAKLLGCLIRNCERLIR-PYIAPIHKA 687 (1880)
Q Consensus 655 ~~~~r~~a~~~L~~l~~~~~~~~~-py~~~il~~ 687 (1880)
+...|+.+++.|..+....++.+. -|++++++.
T Consensus 557 d~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~ 590 (1133)
T KOG1943|consen 557 DVKIRELAAYALHKLSLTEPKYLADYVLPPLLDS 590 (1133)
T ss_pred cHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhh
Confidence 678889999999888877776665 345555443
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-07 Score=127.79 Aligned_cols=271 Identities=21% Similarity=0.246 Sum_probs=176.3
Q ss_pred HHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000194 506 SVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSL 585 (1880)
Q Consensus 506 ~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1880)
.+..+++|+++.||++|+.++..+-. ...++.|. .++.|+++.||..++.+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~---------------------------~~~~~~L~-~aL~D~d~~VR~~Aa~aL 676 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP---------------------------PGFGPALV-AALGDGAAAVRRAAAEGL 676 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc---------------------------hhHHHHHH-HHHcCCCHHHHHHHHHHH
Confidence 44577888999999998887765421 11223333 346899999999998888
Q ss_pred cCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHH
Q 000194 586 YGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL 665 (1880)
Q Consensus 586 ~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1880)
.. +...+ ...+.|...++|+++.||..|+..|+.+....+ + .+ +..+. + +++.+|..|+..
T Consensus 677 ~~---l~~~~---~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~----~----~l---~~~L~-D-~d~~VR~~Av~a 737 (897)
T PRK13800 677 RE---LVEVL---PPAPALRDHLGSPDPVVRAAALDVLRALRAGDA----A----LF---AAALG-D-PDHRVRIEAVRA 737 (897)
T ss_pred HH---HHhcc---CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCH----H----HH---HHHhc-C-CCHHHHHHHHHH
Confidence 41 11101 123456677888899999999999988653221 1 12 22233 3 578888888888
Q ss_pred HHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchh
Q 000194 666 LGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVT 745 (1880)
Q Consensus 666 L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~ 745 (1880)
|+.+-. .+.++..+.|+ ++.|+..++.+|+.+....+ ..++.+...++|. +..
T Consensus 738 L~~~~~-------------~~~l~~~l~D~-----~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~-d~~ 790 (897)
T PRK13800 738 LVSVDD-------------VESVAGAATDE-----NREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDP-DPL 790 (897)
T ss_pred HhcccC-------------cHHHHHHhcCC-----CHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCC-CHH
Confidence 876511 02345566664 78899888888887643211 1256777778876 578
Q ss_pred hHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCccccccc
Q 000194 746 KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRA 825 (1880)
Q Consensus 746 ~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~ 825 (1880)
+|..|+.+|+.+- . + +.+...+...|+++ ++.||.+++++||.+|.
T Consensus 791 VR~aA~~aLg~~g----~---~----~~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~---------------------- 836 (897)
T PRK13800 791 VRAAALAALAELG----C---P----PDDVAAATAALRAS-AWQVRQGAARALAGAAA---------------------- 836 (897)
T ss_pred HHHHHHHHHHhcC----C---c----chhHHHHHHHhcCC-ChHHHHHHHHHHHhccc----------------------
Confidence 9999999998752 1 1 23445567777654 78999999998887652
Q ss_pred CCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHH
Q 000194 826 ASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLF 905 (1880)
Q Consensus 826 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll 905 (1880)
...+..|+..|+|++. .++..++.+|..+ +.-+...+.+.
T Consensus 837 ------------------------------~~a~~~L~~~L~D~~~-~VR~~A~~aL~~~---------~~~~~a~~~L~ 876 (897)
T PRK13800 837 ------------------------------DVAVPALVEALTDPHL-DVRKAAVLALTRW---------PGDPAARDALT 876 (897)
T ss_pred ------------------------------cchHHHHHHHhcCCCH-HHHHHHHHHHhcc---------CCCHHHHHHHH
Confidence 1123577888888875 3444666555543 12246778888
Q ss_pred HHHhcCCcchhHHHHHHHH
Q 000194 906 HTVRTCDDYLKDYITWKLG 924 (1880)
Q Consensus 906 ~~l~~~~~~~~~~~~~~l~ 924 (1880)
..+++.++.+|..+...|.
T Consensus 877 ~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 877 TALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHhCCCHHHHHHHHHHHh
Confidence 8888877778887766554
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.2e-07 Score=109.58 Aligned_cols=359 Identities=15% Similarity=0.123 Sum_probs=226.0
Q ss_pred CHHHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhc-CCChhhhhhHHHHHhHhhcc
Q 000194 22 SLDALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLE-SNDAAENLGALRAIDELIDV 99 (1880)
Q Consensus 22 ~~~~~~~l~~~l~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~-s~~~~~r~~~i~ai~~Li~~ 99 (1880)
.....+..++.+.|.....+ .|...+++.... +..+.--.....-+.+++.+++. ..++..+.-|.-|+-.+..+
T Consensus 64 ~~~~~~~~~~~~~S~~~~~q~~a~~~~rkllS~---~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsg 140 (514)
T KOG0166|consen 64 QASNLELMLAALYSDDPQQQLTATQAFRKLLSK---ERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASG 140 (514)
T ss_pred HhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHcc---CCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcC
Confidence 33447778888887654333 366666666532 22221111111234566666665 45577888899998888766
Q ss_pred ccCcchhHHH-HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH--HHHHHHhhhcCCCcchhHHHHHHH
Q 000194 100 ALGENASKVS-KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF--QVKMALDWLRGDRVEYRRFAAVLI 176 (1880)
Q Consensus 100 ~~~~~~~~~~-~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~--~~~~~~~~l~~~~~~~~R~aA~~~ 176 (1880)
........+. ...+.+..++. +++.+|.+.|.|+||.+|..+... .++|-. .++.++..+.....-.-.+-+..+
T Consensus 141 tse~T~~vv~agavp~fi~Ll~-s~~~~v~eQavWALgNIagds~~~-Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~ 218 (514)
T KOG0166|consen 141 TSEQTKVVVDAGAVPIFIQLLS-SPSADVREQAVWALGNIAGDSPDC-RDYVLSCGALDPLLRLLNKSDKLSMLRNATWT 218 (514)
T ss_pred chhhccccccCCchHHHHHHhc-CCcHHHHHHHHHHHhccccCChHH-HHHHHhhcchHHHHHHhccccchHHHHHHHHH
Confidence 4221111110 11234455554 668999999999999998864322 222221 455566665544333456667899
Q ss_pred HHHHHhhc-CccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH--HHHHHHHHHhhccCCCC
Q 000194 177 LKEMAENA-STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW--YYRMFEATQDGLGRNAP 253 (1880)
Q Consensus 177 l~~la~~~-p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~--~~~~l~~~~~~l~~~~~ 253 (1880)
|.-++.+. |.-=...+..++|.+...+.+.++.|...|+.|++.+.+. +....+. -..+++.+...|..++
T Consensus 219 LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg-----~ne~iq~vi~~gvv~~LV~lL~~~~- 292 (514)
T KOG0166|consen 219 LSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG-----SNEKIQMVIDAGVVPRLVDLLGHSS- 292 (514)
T ss_pred HHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-----ChHHHHHHHHccchHHHHHHHcCCC-
Confidence 99999985 6554568899999999999999999999999999866432 2222222 2356777777777654
Q ss_pred hhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhh-cchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHH
Q 000194 254 VHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLE-HRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILT 330 (1880)
Q Consensus 254 ~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~-~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~ 330 (1880)
..++-.|+.++|-++.+.++...--++ ..++.+..++. ++...+|+.++++|..+++-.+++. +..+ ..++|.|+.
T Consensus 293 ~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qi-qaVida~l~p~Li~ 371 (514)
T KOG0166|consen 293 PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQI-QAVIDANLIPVLIN 371 (514)
T ss_pred cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHH-HHHHHcccHHHHHH
Confidence 355778888888876655533222222 13334444444 6777799999999999998666543 3233 588999999
Q ss_pred hhcCCC--CcchHHHHHHHHHhhchhhhhhhh--hHHHHHHHHhhcCCCCCCCchHHHHHHHHHHH
Q 000194 331 VLRIPA--ERDSGFIALGEMAGALDGELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1880)
Q Consensus 331 ~L~~~~--~r~~a~~alg~la~~v~~~~~p~l--~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~ 392 (1880)
.|.+.. -|..|.-+|++++..-..+...|+ ..+++.+...|.-.+.+....++.++..|.+.
T Consensus 372 ~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 372 LLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 998765 467888999997655444555665 23666666666433333333566777766654
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.0027 Score=81.19 Aligned_cols=375 Identities=17% Similarity=0.179 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHcCCC-CchhhHHHHHHHHHHHHH------hhhChHHHHHHHHHHHHHHHhhhcCCChhh-hhhHHHHH-
Q 000194 23 LDALNRILADLCTHG-NPKEGASLALRKHIEEQA------RDLGGEAFSRFMDQLYDRISGLLESNDAAE-NLGALRAI- 93 (1880)
Q Consensus 23 ~~~~~~l~~~l~s~~-~~~~~aa~~l~~~v~~~~------~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~-r~~~i~ai- 93 (1880)
+++++.+-.-|.+.. +..=+|-..|+.++.+.= |.--.+-+..+++.|.+.+..++...+... .++-+...
T Consensus 126 p~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKi 205 (1010)
T KOG1991|consen 126 PGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKI 205 (1010)
T ss_pred hhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 445555555555543 233356666666665431 111122355667777777777777654321 12222221
Q ss_pred -hHhhc--cccC-cchhHHHHHHHHHHhhccc-------CCChHHH---------HHHHHHHHHHhhhCCCC---ch---
Q 000194 94 -DELID--VALG-ENASKVSKFSNYMRTVFEV-------KRDREIL---------VLASKVLGHLARAGGAM---TA--- 147 (1880)
Q Consensus 94 -~~Li~--~~~~-~~~~~~~~~~~~L~~~l~~-------~~d~~v~---------~~aa~~l~~L~~~~g~~---~~--- 147 (1880)
-+++- ++.. -+++....|......++.- .-|+++| +=|.-.+.|+-.-+|+. ..
T Consensus 206 fks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~ 285 (1010)
T KOG1991|consen 206 FKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYK 285 (1010)
T ss_pred HHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhH
Confidence 23322 2110 1344566677777776652 1244433 33444556665544332 11
Q ss_pred hH--------HHHHHHHHHhhhc--CCCcc-hhH--HHHHHHHHHHHhhcC--ccchhchHHHHHH-HHHHh--------
Q 000194 148 DE--------VEFQVKMALDWLR--GDRVE-YRR--FAAVLILKEMAENAS--TVFNVHVAEFVDA-IWVAL-------- 203 (1880)
Q Consensus 148 ~~--------v~~~~~~~~~~l~--~~~~~-~~R--~aA~~~l~~la~~~p--~~l~~~l~~i~~~-i~~~l-------- 203 (1880)
+| +...+...+..+. ..+-+ ..| .-++.++......+. +.+.||+.-|+.. |+..|
T Consensus 286 ~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~dee 365 (1010)
T KOG1991|consen 286 EFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEE 365 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHH
Confidence 11 1122222222221 11111 112 223333333332222 3678999998855 66655
Q ss_pred ---cCCchhHHH-------------HHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhcc-------CCCChhHHHHH
Q 000194 204 ---RDPTLAVRE-------------RAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLG-------RNAPVHSIHGS 260 (1880)
Q Consensus 204 ---~D~~~~VR~-------------aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~-------~~~~~~~~~~a 260 (1880)
.||+..||+ ||...+-.+ .+.|.. +-++++++-+.+-+. .+++.+.+.||
T Consensus 366 lwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~---~~KR~k----e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGA 438 (1010)
T KOG1991|consen 366 LWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTL---VSKRGK----ETLPKILSFIVDILTRYKEASPPNKNPRQKDGA 438 (1010)
T ss_pred HHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHH---HHhcch----hhhhhHHHHHHHHHHhhcccCCCccChhhhhhH
Confidence 266677772 333333322 222322 233333333332222 22346789999
Q ss_pred HHHHHHHHHcc--hhhhHHHHHHH-HHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC-
Q 000194 261 LLAVGELLRNT--GEFMMSRYREV-AEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA- 336 (1880)
Q Consensus 261 l~~l~~ll~~~--~~~~~~~~~~i-~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~- 336 (1880)
+.+++.|.+.- ..-....++.+ ..-|+..++++--..|..+|+.++.++...-.. +.-+...+....++|.+.+
T Consensus 439 L~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~d~~ 516 (1010)
T KOG1991|consen 439 LRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLNDNE 516 (1010)
T ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhccCCc
Confidence 99999998621 11222333332 335556667777889999999999888532211 1234556666667776433
Q ss_pred --CcchHHHHHHHHHhhchh---hhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 000194 337 --ERDSGFIALGEMAGALDG---ELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMF 409 (1880)
Q Consensus 337 --~r~~a~~alg~la~~v~~---~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~ 409 (1880)
.|..|..||..+..+... .+.|++|++|+.+..-...-.. ...-.++..+...+++.+.||..++.+.|.
T Consensus 517 lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En---d~Lt~vme~iV~~fseElsPfA~eL~q~La 591 (1010)
T KOG1991|consen 517 LPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN---DDLTNVMEKIVCKFSEELSPFAVELCQNLA 591 (1010)
T ss_pred CchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch---hHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence 467888888888777664 3889999999887765533221 356678888999999999999988877654
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.2e-05 Score=99.38 Aligned_cols=552 Identities=18% Similarity=0.157 Sum_probs=295.8
Q ss_pred CChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCc----cchhchHHH-HH
Q 000194 123 RDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAST----VFNVHVAEF-VD 197 (1880)
Q Consensus 123 ~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~----~l~~~l~~i-~~ 197 (1880)
+|...+..+..-+..++...|.... -...++.+-+.+ .+.. .++..+|++-++ .-.|.+..+ ++
T Consensus 94 ~di~~r~~~~~~l~~~a~~~~~~~t--r~~lipf~~e~~-~~~d--------ev~~~~a~~~~~~~~~v~~~~~~~~ll~ 162 (759)
T KOG0211|consen 94 TDIQLRLNSGRKLSNLALALGVERT--RLELIPFLTEAE-DDED--------EVLLDLAEQLGTFLPDVGGPEYAHMLLP 162 (759)
T ss_pred hhhhhhhhhhccccchhhhcccchh--hhhhhhHHHHhc-cchh--------HHHHHHHHHhcccchhccchhHHHHhhH
Confidence 3455555555555555555443322 112233333332 1111 233344444333 333444444 45
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhH-HHHHHHHHHHHHHcch-hhh
Q 000194 198 AIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHS-IHGSLLAVGELLRNTG-EFM 275 (1880)
Q Consensus 198 ~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~al~~l~~ll~~~~-~~~ 275 (1880)
.+.....+....||+.+.+.+........+.. . ...+.+ +...+... +|.. |-.++-+++...-... +.+
T Consensus 163 ~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~--~----~~~lv~-l~~~l~~~-d~~~sr~sacglf~~~~~~~~~~~v 234 (759)
T KOG0211|consen 163 PLELLATVEETGVREKAVESLLKVAVGLPKEK--L----REHLVP-LLKRLATG-DWFQSRLSACGLFGKLYVSLPDDAV 234 (759)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhcChHH--H----HHHHHH-HHHHccch-hhhhcchhhhhhhHHhccCCChHHH
Confidence 56666678888999999998887665443211 1 112222 22222222 2332 3333344444433222 334
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhch
Q 000194 276 MSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALD 353 (1880)
Q Consensus 276 ~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~ 353 (1880)
......++ -..-++.++.||.++..-++.+|...+.+.+. ..+++.+...+..+. .|..|+.+++.+.....
T Consensus 235 k~elr~~~---~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~---s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~ 308 (759)
T KOG0211|consen 235 KRELRPIV---QSLCQDDTPMVRRAVASNLGNIAKVLESEIVK---SEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD 308 (759)
T ss_pred HHHHHHHH---HhhccccchhhHHHHHhhhHHHHHHHHHHHHH---hhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC
Confidence 43333333 33346889999999999999999887775443 455666666665443 58899999999887766
Q ss_pred hhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHH-HhcCCCHHHHHHHHHHHHhCCCCh
Q 000194 354 GELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIM-FSAGLSTTLVDALEQITVSIPSLL 432 (1880)
Q Consensus 354 ~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l-~~~~ls~~l~~~l~~i~~~~p~l~ 432 (1880)
... +....+.+.+.+...+...+.+.-+...+..+...+|+.... ..+.++. ...+..+..... +++..
T Consensus 309 ~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~--~~~~~~~~~l~~~~~~e~r~--a~a~~----- 378 (759)
T KOG0211|consen 309 DDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATR--TQLVPPVSNLLKDEEWEVRY--AIAKK----- 378 (759)
T ss_pred Cch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCc--ccchhhHHHHhcchhhhhhH--Hhhcc-----
Confidence 532 333445555555554443333233344445566666662111 0001110 000110000000 00000
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc-ccC---CCcchhhHHHHHh
Q 000194 433 PTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF-NFK---GHDLLEFARDSVV 508 (1880)
Q Consensus 433 ~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~-~~~---~~~l~~~v~~~~~ 508 (1880)
..-+...... .+. .....|+++.
T Consensus 379 --------------------------------------------------~~~l~~~l~~~~~~~i~~~~ilp~~~~--- 405 (759)
T KOG0211|consen 379 --------------------------------------------------VQKLACYLNASCYPNIPDSSILPEVQV--- 405 (759)
T ss_pred --------------------------------------------------hHHHhhhcCcccccccchhhhhHHHHH---
Confidence 0000000000 000 0111244443
Q ss_pred hhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc--
Q 000194 509 LYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY-- 586 (1880)
Q Consensus 509 ~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~-- 586 (1880)
+..+.+..||.+.+..+..+.. .+++. +.+...++-+ .....|.++.||..+..-+.
T Consensus 406 -lv~d~~~~vr~a~a~~~~~~~p---------~~~k~----------~ti~~llp~~-~~~l~de~~~V~lnli~~ls~~ 464 (759)
T KOG0211|consen 406 -LVLDNALHVRSALASVITGLSP---------ILPKE----------RTISELLPLL-IGNLKDEDPIVRLNLIDKLSLL 464 (759)
T ss_pred -HHhcccchHHHHHhccccccCc---------cCCcC----------cCccccChhh-hhhcchhhHHHHHhhHHHHHHH
Confidence 3455677888766543322211 11111 1122222222 22457888999988774321
Q ss_pred -C-CCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHH
Q 000194 587 -G-NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAK 664 (1880)
Q Consensus 587 -~-~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~ 664 (1880)
. .........+...++.+.....|....+|.+.++.+..++.... ++++...+.+++..-..+ .....|+.|+.
T Consensus 465 ~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d-~v~~Ir~~aa~ 540 (759)
T KOG0211|consen 465 EEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPD-HVYSIREAAAR 540 (759)
T ss_pred HhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhh-hHHHHHHHHHH
Confidence 1 01111222234467777777778889999999999888887665 233333333333322222 34567889999
Q ss_pred HHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCch
Q 000194 665 LLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAV 744 (1880)
Q Consensus 665 ~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~ 744 (1880)
.+..++...| -.=+...+++.++....++ +.-.+.+.+.++..++.++|..+ +...++|.+.....|+ ..
T Consensus 541 ~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~-----~y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~-va 610 (759)
T KOG0211|consen 541 NLPALVETFG--SEWARLEEIPKLLAMDLQD-----NYLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDP-VA 610 (759)
T ss_pred HhHHHHHHhC--cchhHHHhhHHHHHHhcCc-----ccchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCC-ch
Confidence 9999999888 2334556666666666553 56678888999999999999865 4578999999988887 57
Q ss_pred hhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 745 TKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 745 ~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
++|-++++.|-.+....... ..-..+.+.+ ..|..+++..+|..+..++|.+.
T Consensus 611 nVR~nvak~L~~i~~~L~~~----~~~~~v~pll-~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 611 NVRINVAKHLPKILKLLDES----VRDEEVLPLL-ETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred hhhhhHHHHHHHHHhhcchH----HHHHHHHHHH-HHhccCcccchhHHHHHHHHHHH
Confidence 89999999999887655331 1112344443 44445667888988888888775
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-06 Score=103.42 Aligned_cols=349 Identities=16% Similarity=0.150 Sum_probs=221.4
Q ss_pred ccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC--C
Q 000194 511 LDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG--N 588 (1880)
Q Consensus 511 l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~--~ 588 (1880)
+.++++..+..|..+.++++..... .+...-....+++.+++..-.+..+.++..+.-+|+- .
T Consensus 75 ~~S~~~~~q~~a~~~~rkllS~~~~---------------ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAs 139 (514)
T KOG0166|consen 75 LYSDDPQQQLTATQAFRKLLSKERN---------------PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIAS 139 (514)
T ss_pred HhCCCHHHHHHHHHHHHHHHccCCC---------------CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhc
Confidence 3344555566677777777754321 0112233456778888776667778888877665531 0
Q ss_pred CCc--chhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHH------HHHHHHHhcCCCChHhHH
Q 000194 589 RGF--DDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHL------IQLLTYLEQSSADNKCRE 660 (1880)
Q Consensus 589 ~~f--d~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l------~~~l~~l~~~~~~~~~r~ 660 (1880)
..- -........++.+..++..++..|++.|+++||.++...|. +|.++ ..++..+..+ .......
T Consensus 140 gtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~-----~Rd~vl~~g~l~pLl~~l~~~-~~~~~lR 213 (514)
T KOG0166|consen 140 GTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD-----CRDYVLSCGALDPLLRLLNKS-DKLSMLR 213 (514)
T ss_pred CchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH-----HHHHHHhhcchHHHHHHhccc-cchHHHH
Confidence 000 01122334688888999999999999999999999988753 44443 3344444444 2224566
Q ss_pred HHHHHHHHHHHhC-cccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHH-hHHHHHHHHH
Q 000194 661 ESAKLLGCLIRNC-ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS-ELMPLIVEAL 738 (1880)
Q Consensus 661 ~a~~~L~~l~~~~-~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~-~l~p~l~~~l 738 (1880)
.+.|+|..+++.. |..-..-+.++++.|...+... +..|...++.++..|+....+.+.-.++ .++|.+++.|
T Consensus 214 n~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~-----D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL 288 (514)
T KOG0166|consen 214 NATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST-----DEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLL 288 (514)
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHH
Confidence 8999999999875 3222233668888888888764 8889999999999998765554443333 5688999988
Q ss_pred hcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCC
Q 000194 739 LDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGS 818 (1880)
Q Consensus 739 ~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~ 818 (1880)
... +..++..|+.++|.++.+++....-- .....++.|..++.......+|.+|+.+++-|+|=.+...
T Consensus 289 ~~~-~~~v~~PaLRaiGNIvtG~d~QTq~v-i~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qi--------- 357 (514)
T KOG0166|consen 289 GHS-SPKVVTPALRAIGNIVTGSDEQTQVV-INSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQI--------- 357 (514)
T ss_pred cCC-CcccccHHHhhccceeeccHHHHHHH-HhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHH---------
Confidence 755 45677889999999887765531111 1245788888888755566799999999999876221100
Q ss_pred cccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCc-
Q 000194 819 HGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYL- 897 (1880)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l- 897 (1880)
..+ ...-+++.|+.+|+..... .+..++=||.++...-.+.-..||
T Consensus 358 ------------------qaV--------------ida~l~p~Li~~l~~~ef~-~rKEAawaIsN~ts~g~~~qi~yLv 404 (514)
T KOG0166|consen 358 ------------------QAV--------------IDANLIPVLINLLQTAEFD-IRKEAAWAISNLTSSGTPEQIKYLV 404 (514)
T ss_pred ------------------HHH--------------HHcccHHHHHHHHhccchH-HHHHHHHHHHhhcccCCHHHHHHHH
Confidence 000 1123456777777665543 344666666666544333334454
Q ss_pred -chhhHHHHHHHhcCCcchhHHHHHHHHHHHHH
Q 000194 898 -PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSI 929 (1880)
Q Consensus 898 -~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~ 929 (1880)
..+++.|...+.-.+......++..+..+...
T Consensus 405 ~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 405 EQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 34778887777333334555566666665544
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.0062 Score=76.99 Aligned_cols=199 Identities=13% Similarity=0.134 Sum_probs=122.1
Q ss_pred hHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhh---ccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCc
Q 000194 555 RRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFL---AQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNP 631 (1880)
Q Consensus 555 ~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L---~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p 631 (1880)
.++...++...+.....|.-+-+|.+++.++.. -..+++ -+|.+++.|.+...+.+.+|-...++.|+..++.+|
T Consensus 485 ~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~--~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dp 562 (1005)
T KOG2274|consen 485 PQLLQHFLNATVNALTMDVPPPVKISAVRAFCG--YCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDP 562 (1005)
T ss_pred hhHHHHHHHHHHHhhccCCCCchhHHHHHHHHh--ccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccCh
Confidence 456666777777777778788899999998852 001221 147789999999999999999999999999999998
Q ss_pred ccccHHHHHHHHHHHHH-HhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHH
Q 000194 632 AYVLPALRRHLIQLLTY-LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLV 710 (1880)
Q Consensus 632 ~~v~p~l~~~l~~~l~~-l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~ 710 (1880)
..--..-.++....+.- +.++ +++..-..+-.++-++... ..-..|+....++.+++.+..+... ..+.....++.
T Consensus 563 ef~as~~skI~P~~i~lF~k~s-~DP~V~~~~qd~f~el~q~-~~~~g~m~e~~iPslisil~~~~~~-~~~~l~~~aid 639 (1005)
T KOG2274|consen 563 EFAASMESKICPLTINLFLKYS-EDPQVASLAQDLFEELLQI-AANYGPMQERLIPSLISVLQLNADK-APAGLCAIAID 639 (1005)
T ss_pred hhhhhhhcchhHHHHHHHHHhc-CCchHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHHHHHcCcccc-cCchhhHHHHH
Confidence 64211111111111111 3455 6776555555555555542 1223577788888888888765321 12444455556
Q ss_pred HHHHHHHhcCCch-hhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 000194 711 TVGDLARVGGFGM-RQYISELMPLIVEALLDGAAVTKREVAVSTLGQVV 758 (1880)
Q Consensus 711 ~l~~La~~~g~~~-~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~ 758 (1880)
-|..+.+..+..+ ...+...+|.+.++.-...+.+.=.+|-.+|..++
T Consensus 640 vLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 640 VLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred HHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 6666667666544 33556667777776654434444444444444443
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.8e-05 Score=92.67 Aligned_cols=376 Identities=19% Similarity=0.182 Sum_probs=220.5
Q ss_pred hHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHH
Q 000194 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560 (1880)
Q Consensus 481 ~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1880)
..+.||++|+.+.. +...|.+.-.+-....|+.+.||+.||.++.+++..+++ -...+.+
T Consensus 124 iRasALRvlSsIRv--p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e------------------~k~qL~e 183 (968)
T KOG1060|consen 124 IRASALRVLSSIRV--PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE------------------QKDQLEE 183 (968)
T ss_pred HHHHHHHHHHhcch--hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh------------------hHHHHHH
Confidence 56899999999854 244566666666778899999999999999999976542 1123556
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhccCC--CCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCC---c----
Q 000194 561 LVEKLLIAAVADADVTVRHSIFSSLYGN--RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKN---P---- 631 (1880)
Q Consensus 561 vl~~Ll~~~~~d~~~~vR~~~l~~l~~~--~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~---p---- 631 (1880)
++++| ++|.++-|.-+++.+|.++ .+++ |-+ .+-+.+...+-|-+.==+...+..|-|.+.+. |
T Consensus 184 ~I~~L----LaD~splVvgsAv~AF~evCPerld--LIH-knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~ 256 (968)
T KOG1060|consen 184 VIKKL----LADRSPLVVGSAVMAFEEVCPERLD--LIH-KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVD 256 (968)
T ss_pred HHHHH----hcCCCCcchhHHHHHHHHhchhHHH--Hhh-HHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccc
Confidence 66666 4899999999999999642 1221 111 12334444444432211233444444443321 1
Q ss_pred ---------------------cccc-HHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHH
Q 000194 632 ---------------------AYVL-PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALV 689 (1880)
Q Consensus 632 ---------------------~~v~-p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll 689 (1880)
.++. |.+ +.+++....+..+ ..+.+--.++.++-.++-.. -+..|.+.|+
T Consensus 257 ~~~e~n~~~~~~~~~~~~~~~P~~~d~D~-~lLL~stkpLl~S-~n~sVVmA~aql~y~lAP~~------~~~~i~kaLv 328 (968)
T KOG1060|consen 257 SSLEDNGRSCNLKDKYNEIRTPYVNDPDL-KLLLQSTKPLLQS-RNPSVVMAVAQLFYHLAPKN------QVTKIAKALV 328 (968)
T ss_pred cccccCcccccccccccccCCCcccCccH-HHHHHhccHHHhc-CCcHHHHHHHhHHHhhCCHH------HHHHHHHHHH
Confidence 0111 222 3455555555555 44554445555555554322 2456778888
Q ss_pred HHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCC
Q 000194 690 ARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYN 769 (1880)
Q Consensus 690 ~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~ 769 (1880)
..|+. ++.++..++.+|..++......|.||+..++- ...+....+.--+..|..++....
T Consensus 329 rLLrs------~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv------~ssDp~~vk~lKleiLs~La~esn------- 389 (968)
T KOG1060|consen 329 RLLRS------NREVQYVVLQNIATISIKRPTLFEPHLKSFFV------RSSDPTQVKILKLEILSNLANESN------- 389 (968)
T ss_pred HHHhc------CCcchhhhHHHHHHHHhcchhhhhhhhhceEe------ecCCHHHHHHHHHHHHHHHhhhcc-------
Confidence 88875 56677777888888988888888888776532 111222344444566666665432
Q ss_pred cchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCC
Q 000194 770 EYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFAT 849 (1880)
Q Consensus 770 ~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 849 (1880)
.++++.-+...+++. +..+.-+++++||.+|... .
T Consensus 390 -i~~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~-----------------------------------~-------- 424 (968)
T KOG1060|consen 390 -ISEILRELQTYIKSS-DRSFAAAAVKAIGRCASRI-----------------------------------G-------- 424 (968)
T ss_pred -HHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhh-----------------------------------C--------
Confidence 357788887777655 4468889999999987310 0
Q ss_pred CcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcC-CcchhHHHHHHHHHHHH
Q 000194 850 SEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTC-DDYLKDYITWKLGTLVS 928 (1880)
Q Consensus 850 ~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~-~~~~~~~~~~~l~~lv~ 928 (1880)
-.++.+++.|+..|+..+-. .+.++++.|=+-+..+ ..-..+|+-.+...+.+- -|..|..++|.+|..+.
T Consensus 425 ---sv~~tCL~gLv~Llsshde~----Vv~eaV~vIk~Llq~~-p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e 496 (968)
T KOG1060|consen 425 ---SVTDTCLNGLVQLLSSHDEL----VVAEAVVVIKRLLQKD-PAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCE 496 (968)
T ss_pred ---chhhHHHHHHHHHHhcccch----hHHHHHHHHHHHHhhC-hHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhh
Confidence 02367889999988765321 3455555544433332 122334555555555332 24457777777776665
Q ss_pred HHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHH
Q 000194 929 IVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQL 973 (1880)
Q Consensus 929 ~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l 973 (1880)
+ +-..+|+++..+.+.+.... +....+++.+...+
T Consensus 497 ~----vpri~PDVLR~laksFs~E~------~evKlQILnL~aKL 531 (968)
T KOG1060|consen 497 I----VPRIAPDVLRKLAKSFSDEG------DEVKLQILNLSAKL 531 (968)
T ss_pred h----cchhchHHHHHHHHhhcccc------chhhHHHHHhhhhh
Confidence 4 33456777777766665432 12233555555444
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00029 Score=90.06 Aligned_cols=324 Identities=14% Similarity=0.192 Sum_probs=194.2
Q ss_pred HHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHH-H
Q 000194 74 ISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-F 152 (1880)
Q Consensus 74 i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~-~ 152 (1880)
+++.++.++.+.-.-+...|+.+++.. .......++.++|...+. .+++.|+..+++.+++++.+......-+++ .
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l~~~~~~~L~~gL~-h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL--SPDSLLPQYQPFLQRGLT-HPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 667776654444344445566665542 222336778889999997 568999999999999998864332221222 2
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhc-hHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchh
Q 000194 153 QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVH-VAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR 231 (1880)
Q Consensus 153 ~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~-l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~ 231 (1880)
.++.++..+. +.+.....+|..+|+.++.+.+.. ..- =+..++.+...+..++..+|..+.+.+..+...-.
T Consensus 120 l~~~i~~~L~-~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~----- 192 (503)
T PF10508_consen 120 LLPLIIQCLR-DPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSP----- 192 (503)
T ss_pred HHHHHHHHHc-CCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCH-----
Confidence 4555555554 445566778889999999764321 111 01126667777777788899888887766544211
Q ss_pred hHHHHH--HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc--hhhhHHHHHHHHHHHHHHhhc--chhHHH----HHH
Q 000194 232 WRVQWY--YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT--GEFMMSRYREVAEIVLRYLEH--RDRLVR----LSI 301 (1880)
Q Consensus 232 ~~~~~~--~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~--~~~~~~~~~~i~~~ll~~~~~--~~~~Vr----~~~ 301 (1880)
..-+.. ..+++.+...+.+. |.-++..++.++.+|.... -+|+... .+++.+...+.+ .++..+ -..
T Consensus 193 ~~~~~~~~sgll~~ll~eL~~d-DiLvqlnalell~~La~~~~g~~yL~~~--gi~~~L~~~l~~~~~dp~~~~~~l~g~ 269 (503)
T PF10508_consen 193 EAAEAVVNSGLLDLLLKELDSD-DILVQLNALELLSELAETPHGLQYLEQQ--GIFDKLSNLLQDSEEDPRLSSLLLPGR 269 (503)
T ss_pred HHHHHHHhccHHHHHHHHhcCc-cHHHHHHHHHHHHHHHcChhHHHHHHhC--CHHHHHHHHHhccccCCcccchhhhhH
Confidence 111222 24888888888884 5778999999999998832 1333321 244444444432 222111 123
Q ss_pred HHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC--CCcchHHHHHHHHHhhchh-hhh-----hhhhHHHHHHHHhhcC
Q 000194 302 TSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP--AERDSGFIALGEMAGALDG-ELF-----HYLPTITSHLREAIAP 373 (1880)
Q Consensus 302 ~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~--~~r~~a~~alg~la~~v~~-~~~-----p~l~~i~~~l~~~l~~ 373 (1880)
+...+.++...+..+...| +.++..+...+... ..+..|++++|.++..+.+ .+. +-+..++..+-.....
T Consensus 270 ~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~ 348 (503)
T PF10508_consen 270 MKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKS 348 (503)
T ss_pred HHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcC
Confidence 4566667777777776644 78888888777654 3588999999999977754 222 1223334444444433
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhc
Q 000194 374 RRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSA 411 (1880)
Q Consensus 374 ~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~ 411 (1880)
...+.+..+++|++.+...-.+.-..-+..+....+..
T Consensus 349 ~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~ 386 (503)
T PF10508_consen 349 GSTELKLRALHALASILTSGTDRQDNDILSITESWYES 386 (503)
T ss_pred CchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 33333457889999887644332333444555555543
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.0072 Score=80.34 Aligned_cols=149 Identities=14% Similarity=0.221 Sum_probs=115.9
Q ss_pred chhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 000194 146 TADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVI 225 (1880)
Q Consensus 146 ~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1880)
....++++++..+..+. +..-+.|--|+.+|..+++..|.++. -+.+...|-.-+.|.+..||+||.+-++.+.-
T Consensus 810 f~~sfD~yLk~Il~~l~-e~~ialRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~DssasVREAaldLvGrfvl-- 884 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLG-ENAIALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLNDSSASVREAALDLVGRFVL-- 884 (1692)
T ss_pred HHHhhHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhccchhHHHHHHHHHHhhhhh--
Confidence 34456777888887776 55568899999999999999888654 35677778899999999999999999886642
Q ss_pred hhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHh
Q 000194 226 EKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLL 305 (1880)
Q Consensus 226 ~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i 305 (1880)
..++.+.++|+.+..++.++. .-+|..++.++.++.+..++| +.+.++|..+++..++.+..|++.|+.++
T Consensus 885 ------~~~e~~~qyY~~i~erIlDtg-vsVRKRvIKIlrdic~e~pdf--~~i~~~cakmlrRv~DEEg~I~kLv~etf 955 (1692)
T KOG1020|consen 885 ------SIPELIFQYYDQIIERILDTG-VSVRKRVIKILRDICEETPDF--SKIVDMCAKMLRRVNDEEGNIKKLVRETF 955 (1692)
T ss_pred ------ccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 233466777888888888875 678999999999998876665 34567888888877777777888887766
Q ss_pred HhH
Q 000194 306 PRI 308 (1880)
Q Consensus 306 ~~l 308 (1880)
-.+
T Consensus 956 ~kl 958 (1692)
T KOG1020|consen 956 LKL 958 (1692)
T ss_pred HHH
Confidence 554
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.7e-06 Score=113.40 Aligned_cols=257 Identities=22% Similarity=0.170 Sum_probs=140.4
Q ss_pred chhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccc-cccCCccccccccchhHH
Q 000194 479 SAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSF-TQFGASRSNRTGGKRRRL 557 (1880)
Q Consensus 479 ~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 557 (1880)
......|+..|+.+.- +-..+.+...++|+++.||.+|+.++..+.......... ..+. .........+.+.
T Consensus 635 ~~VR~~Av~~L~~~~~------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~-~~d~~VR~~A~~a 707 (897)
T PRK13800 635 PGVRRTAVAVLTETTP------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLG-SPDPVVRAAALDV 707 (897)
T ss_pred HHHHHHHHHHHhhhcc------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhc-CCCHHHHHHHHHH
Confidence 3345667777776621 112233446788999999999999988764211100000 0000 0000000001111
Q ss_pred HHHH---HHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccc
Q 000194 558 IEEL---VEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV 634 (1880)
Q Consensus 558 ~~~v---l~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v 634 (1880)
+..+ -...+...+.|+|+.||..++.+|.. ++. .+.|..+++|++.+||..+...|+.+....+..
T Consensus 708 L~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~---~~~-------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~- 776 (897)
T PRK13800 708 LRALRAGDAALFAAALGDPDHRVRIEAVRALVS---VDD-------VESVAGAATDENREVRIAVAKGLATLGAGGAPA- 776 (897)
T ss_pred HHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhc---ccC-------cHHHHHHhcCCCHHHHHHHHHHHHHhccccchh-
Confidence 1100 00122234567777777777777752 111 233455677777788887777777776543311
Q ss_pred cHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHH
Q 000194 635 LPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGD 714 (1880)
Q Consensus 635 ~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~ 714 (1880)
.|. +..+..+ +++.+|..|+..|+.+... +.+...++..+.++ ++.|+..++.+|+.
T Consensus 777 ~~~--------L~~ll~D-~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~-----d~~VR~~Aa~aL~~ 833 (897)
T PRK13800 777 GDA--------VRALTGD-PDPLVRAAALAALAELGCP---------PDDVAAATAALRAS-----AWQVRQGAARALAG 833 (897)
T ss_pred HHH--------HHHHhcC-CCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCC-----ChHHHHHHHHHHHh
Confidence 111 1222233 4677777777777666221 11223455666654 67778777777765
Q ss_pred HHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHH
Q 000194 715 LARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREV 794 (1880)
Q Consensus 715 La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~ 794 (1880)
+.. ++.++.++..|.|. +..+|..|+.+|+.+ .+ -|...+.|...++ +.+..||.++
T Consensus 834 l~~----------~~a~~~L~~~L~D~-~~~VR~~A~~aL~~~---~~--------~~~a~~~L~~al~-D~d~~Vr~~A 890 (897)
T PRK13800 834 AAA----------DVAVPALVEALTDP-HLDVRKAAVLALTRW---PG--------DPAARDALTTALT-DSDADVRAYA 890 (897)
T ss_pred ccc----------cchHHHHHHHhcCC-CHHHHHHHHHHHhcc---CC--------CHHHHHHHHHHHh-CCCHHHHHHH
Confidence 531 24457777777776 567888888888874 01 1455666666665 3477888888
Q ss_pred HHHHH
Q 000194 795 LKVLG 799 (1880)
Q Consensus 795 l~~lg 799 (1880)
.++|+
T Consensus 891 ~~aL~ 895 (897)
T PRK13800 891 RRALA 895 (897)
T ss_pred HHHHh
Confidence 77764
|
|
| >KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.052 Score=78.39 Aligned_cols=184 Identities=18% Similarity=0.242 Sum_probs=114.2
Q ss_pred HHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHH
Q 000194 605 FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPI 684 (1880)
Q Consensus 605 ~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~i 684 (1880)
..++.|.++.+|......++ ..+.|....|.+-+.+... .++ +....++.+...+|.++...+..+.|++...
T Consensus 535 ~~aia~~~~~i~~~v~~~l~--~~~~~~laQ~~~lr~~~~a----l~~-~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~ 607 (2341)
T KOG0891|consen 535 TVAIADTDPDIRIRVLSSLN--ERFDAQLAQPDLLRLLFIA----LHD-ENFAIQELATVIIGRLSSYNPAYVLPSLRKT 607 (2341)
T ss_pred HHhccCCCcchhhhHHhhhc--cchhhhhcCchhHHHHHHH----hhh-hhhhhHHhHHhhccccccccHHHHhHHHHHH
Confidence 35567888999888887776 2222222334333332222 223 3445567777788888777777777777766
Q ss_pred HHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcc
Q 000194 685 HKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV 764 (1880)
Q Consensus 685 l~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~ 764 (1880)
...+...+.-. ....+......-+..+......-+.+|++.++-.++..+++..+ .+-.+++.++|.++..+|..
T Consensus 608 ~l~~~s~l~~s----g~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s-~~~~~~~~~~~eL~~v~g~~ 682 (2341)
T KOG0891|consen 608 LLELLTELEFS----GMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSS-GVEKAVLETIGELCAVGGEE 682 (2341)
T ss_pred HHHHhchhhhc----chHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccch-hhHHHHHHHHHHHHHhccch
Confidence 65555555432 11111111111222222222334678888888888888887743 45557789999999999976
Q ss_pred cccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 765 ITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 765 i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
+..+.+ .++..+...+.+-.+..-|+++++++|.+.
T Consensus 683 ~~~~~~--~~~~~~~~~l~~~s~~~rr~aslk~l~~l~ 718 (2341)
T KOG0891|consen 683 MVKWVD--ELFSLIIKMLQDQSSLGKRLAALKALGQLE 718 (2341)
T ss_pred hhhccc--hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence 666655 577777777754445677889999998874
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0018 Score=83.80 Aligned_cols=524 Identities=15% Similarity=0.082 Sum_probs=284.8
Q ss_pred hhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhh
Q 000194 168 YRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDG 247 (1880)
Q Consensus 168 ~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~ 247 (1880)
..|..+...++.++-....-.. ...++|.+.... |....|+.+++.-++.+...+. .+++...+++.+...
T Consensus 97 ~~r~~~~~~l~~~a~~~~~~~t--r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~------~~~~~~~ll~~le~l 167 (759)
T KOG0211|consen 97 QLRLNSGRKLSNLALALGVERT--RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG------GPEYAHMLLPPLELL 167 (759)
T ss_pred hhhhhhhccccchhhhcccchh--hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc------chhHHHHhhHHHHhh
Confidence 3455554454444433222111 445666666777 8888999999888887765433 222333344444443
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcch-hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHH
Q 000194 248 LGRNAPVHSIHGSLLAVGELLRNTG-EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMN 326 (1880)
Q Consensus 248 l~~~~~~~~~~~al~~l~~ll~~~~-~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~ 326 (1880)
.... .+.+++.++..+..++.... +....++-.++..+. ...-..-|-.++.+++..+-..++.+++.- ..+
T Consensus 168 ~~~e-et~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~---~~d~~~sr~sacglf~~~~~~~~~~~vk~e---lr~ 240 (759)
T KOG0211|consen 168 ATVE-ETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLA---TGDWFQSRLSACGLFGKLYVSLPDDAVKRE---LRP 240 (759)
T ss_pred hHHH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHcc---chhhhhcchhhhhhhHHhccCCChHHHHHH---HHH
Confidence 3332 46778888887777766332 222223222222221 111112344455566655555555555432 222
Q ss_pred HHHHhhcC--CCCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 000194 327 HILTVLRI--PAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGL 404 (1880)
Q Consensus 327 ~Ll~~L~~--~~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~l 404 (1880)
...+.-+. +..|..+..-+|.+|..++++.. ...+++...+-..+....++..++.++..+..-+..+. +....+
T Consensus 241 ~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~--~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~ 317 (759)
T KOG0211|consen 241 IVQSLCQDDTPMVRRAVASNLGNIAKVLESEIV--KSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSL 317 (759)
T ss_pred HHHhhccccchhhHHHHHhhhHHHHHHHHHHHH--HhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhh
Confidence 22222222 34578899999999999987421 22334444444444444556678888888777655432 333444
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHH
Q 000194 405 LDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQL 484 (1880)
Q Consensus 405 l~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1880)
.+.+++..-++.-+. +..+.+...+.-
T Consensus 318 ~~~l~~~~~d~~~~v------------~~~~~~~~~~L~----------------------------------------- 344 (759)
T KOG0211|consen 318 TESLVQAVEDGSWRV------------SYMVADKFSELS----------------------------------------- 344 (759)
T ss_pred hHHHHHHhcChhHHH------------HHHHhhhhhhHH-----------------------------------------
Confidence 444443211110000 000111111110
Q ss_pred HHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHH
Q 000194 485 ALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEK 564 (1880)
Q Consensus 485 Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~ 564 (1880)
..+|. . +.. +.........+.+...++|.+++.-+..+-...... ++.+ ... ..+++
T Consensus 345 --~~~~~-~--~~~--~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~----------~~~~--i~~---~~ilp- 401 (759)
T KOG0211|consen 345 --SAVGP-S--ATR--TQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS----------CYPN--IPD---SSILP- 401 (759)
T ss_pred --HHhcc-c--cCc--ccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcc----------cccc--cch---hhhhH-
Confidence 00111 0 000 000112224456667788888776554443211100 0000 011 11122
Q ss_pred HHHHHhcCCChhHHHHHHHhccCC-CCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHH
Q 000194 565 LLIAAVADADVTVRHSIFSSLYGN-RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLI 643 (1880)
Q Consensus 565 Ll~~~~~d~~~~vR~~~l~~l~~~-~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~ 643 (1880)
-++..+.|++..||.+.......- ..+...-.-...++.....++|+.++||...++.+..+-..++..-.-.+.+.++
T Consensus 402 ~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slL 481 (759)
T KOG0211|consen 402 EVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLL 481 (759)
T ss_pred HHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhh
Confidence 233456899999998876654310 1110000012356667778999999999999987766655554322233344445
Q ss_pred HHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHH-hccCCCCCCChhHHHHHHHHHHHHHHhcCCc
Q 000194 644 QLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVAR-LLEGTGINANNGIISGVLVTVGDLARVGGFG 722 (1880)
Q Consensus 644 ~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~-l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~ 722 (1880)
..+.++..+ ..++.|....+.+..++...+ .+++.+.+..++.. +.+ .-..++.++...+-.++...|
T Consensus 482 p~i~el~~d-~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d-----~v~~Ir~~aa~~l~~l~~~~G-- 550 (759)
T KOG0211|consen 482 PAIVELAED-LLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPD-----HVYSIREAAARNLPALVETFG-- 550 (759)
T ss_pred hhhhhhccc-hhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhh-----hHHHHHHHHHHHhHHHHHHhC--
Confidence 555566544 457888888888888887766 34444444333333 333 256788888889999998888
Q ss_pred hhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 723 MRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 723 ~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
-.-+...++|.++....+. +.-.|.+.+.++..++.-.|..+. ...+++.+..+.. +..+.||-.+++.+-.++
T Consensus 551 ~~w~~~~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei~----~~~Llp~~~~l~~-D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 551 SEWARLEEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEIT----CEDLLPVFLDLVK-DPVANVRINVAKHLPKIL 624 (759)
T ss_pred cchhHHHhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHHH----HHHHhHHHHHhcc-CCchhhhhhHHHHHHHHH
Confidence 3345567788888877654 466888889999999988886532 2467888877665 557899999999887765
Q ss_pred c
Q 000194 803 A 803 (1880)
Q Consensus 803 a 803 (1880)
.
T Consensus 625 ~ 625 (759)
T KOG0211|consen 625 K 625 (759)
T ss_pred h
Confidence 3
|
|
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.025 Score=70.93 Aligned_cols=413 Identities=14% Similarity=0.172 Sum_probs=217.7
Q ss_pred hHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhc-----C----CchhhhHH
Q 000194 658 CREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG-----G----FGMRQYIS 728 (1880)
Q Consensus 658 ~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~-----g----~~~~~~~~ 728 (1880)
.|..|+.++..+.++....+.+-+...++.++...... ++.++.-+..+++-+..++..+ | ..+.+..+
T Consensus 378 RRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~n--PS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~ 455 (960)
T KOG1992|consen 378 RRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKN--PSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVD 455 (960)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccC--CCccccccchhhhhhHHHHhhcchhhcceeeccccccHHH
Confidence 36678899999999887777777777777777655432 2334444555555555555443 2 12233222
Q ss_pred hHHHHHHHHHhc---CCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccC
Q 000194 729 ELMPLIVEALLD---GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALD 805 (1880)
Q Consensus 729 ~l~p~l~~~l~d---~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgald 805 (1880)
-+...+..-|.. ......|..|++-+-..-.. +.| .+.-.+++.|.+.|+.+ +..|..=|..++-.+-.++
T Consensus 456 Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~q----l~~-~~lm~~~p~li~~L~a~-s~vvhsYAA~aiEkil~vr 529 (960)
T KOG1992|consen 456 FFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQ----LGK-EHLMALLPRLIRFLEAE-SRVVHSYAAIAIEKLLTVR 529 (960)
T ss_pred HHHHHhhHHhccCccccccchhhcccceeeeeccc----CCh-HHHHHHHHHHHHhccCc-chHHHHHHHHHHHhccccc
Confidence 233333333332 11233444444332221111 111 12345777788888765 4455544444443321110
Q ss_pred ccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHH
Q 000194 806 PHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFI 885 (1880)
Q Consensus 806 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i 885 (1880)
++ ++. -+ . .+..-..|....+..|.+.++-|.- .-..-...|++.+
T Consensus 530 -----------e~----------~~~---~i--f-------~~~~iap~~~~ll~nLf~a~s~p~~-~EneylmKaImRi 575 (960)
T KOG1992|consen 530 -----------EN----------SNA---KI--F-------GAEDIAPFVEILLTNLFKALSLPGK-AENEYLMKAIMRI 575 (960)
T ss_pred -----------cC----------ccc---cc--c-------chhhcchHHHHHHHHHHHhccCCcc-cccHHHHHHHHHH
Confidence 00 000 00 0 0000112335566667766654432 3345688999999
Q ss_pred HHHhCCCCCCCcchhhHHHHHHHh----c-CCcchhHHHHHHHHHHHHHHHH----hHHHhHHHHHHHHHHhhcCCCCCc
Q 000194 886 FKSMGLGCVPYLPKVLPDLFHTVR----T-CDDYLKDYITWKLGTLVSIVRQ----HIRKYLQELFSLISELWSSFSLPA 956 (1880)
Q Consensus 886 ~~~~~~~~~~~l~~iip~ll~~l~----~-~~~~~~~~~~~~l~~lv~~~~~----~i~~y~~~i~~~i~~~~~~~~~~~ 956 (1880)
+........|+.+.+++.+.+.+. + ++|..--++|..+|.++...+. .+..+...+++.+...+...-
T Consensus 576 i~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI--- 652 (960)
T KOG1992|consen 576 ISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDI--- 652 (960)
T ss_pred HHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH---
Confidence 988877778999988888876553 3 2445677888999999887753 245666666655554443210
Q ss_pred ccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHH-hcccccccCchhhHHHHHHHHHHHhcchh---hhhhhhHHH
Q 000194 957 TNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQ-VLSDAERCNDYTYVLDILHTLEVFGGTLD---EHMHLLLPA 1032 (1880)
Q Consensus 957 ~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~-~l~~~~~~~~~~~~~~il~~l~~~g~~~~---~~~~~ilp~ 1032 (1880)
...-..++++++.+...-+...-+....++|.++. .+=+ ++..-....++++++..-|+..- +.+..++..
T Consensus 653 ---~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~--r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGi 727 (960)
T KOG1992|consen 653 ---QEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWK--RSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGI 727 (960)
T ss_pred ---HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHh--hcCCcHHHHHHHHHHHhcCchhhcccccchhHHHH
Confidence 00011355566555554444222222333444331 1111 22233456677777766665432 345555666
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHhhcccc---cccchhHhHHHHHHHhhCCCC-HHHHHHHHHHHHHHHHHhccccccchh
Q 000194 1033 LIRLFKVDAPVDIRRAAIETLTRLIPRV---QVTGHISSLVHHLKLVLDGKN-DELRKDAVDALCCLAHALGEDFTIFIP 1108 (1880)
Q Consensus 1033 l~~~l~~~~~~~vr~~ai~~l~~l~~~~---~~~~~~~~ii~~l~~~l~~~~-~~l~~~al~~L~~l~~~~g~~f~~fip 1108 (1880)
+.+++-+-..+ ......+..+.... .+.||...|...+.+=+++.. +...+..+-.++..+.+.|..+
T Consensus 728 fqkLiaSka~D---h~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ik~~~~~----- 799 (960)
T KOG1992|consen 728 FQKLIASKAND---HHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTIKKGGLM----- 799 (960)
T ss_pred HHHHhcCcccc---hhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhhHH-----
Confidence 66665422112 34445555554443 356788888888777666543 5666777777777777777765
Q ss_pred HHHHHHHhCCCCchhHHHHHHHH
Q 000194 1109 SIHKLLLKHRLRHKEFEEIEGRL 1131 (1880)
Q Consensus 1109 ~i~~~l~~~~~~~~~~~~~~~~~ 1131 (1880)
+.+.+. +++...|..+.+++
T Consensus 800 -l~e~~d--~IQ~~~fg~l~e~~ 819 (960)
T KOG1992|consen 800 -LAEVID--GIQPGMFGMLLENF 819 (960)
T ss_pred -HHHHHh--hcchhHHHHHHHHh
Confidence 222222 24555555555444
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00087 Score=82.77 Aligned_cols=476 Identities=17% Similarity=0.180 Sum_probs=246.0
Q ss_pred HHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH
Q 000194 73 RISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF 152 (1880)
Q Consensus 73 ~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~ 152 (1880)
.+..|++|..-..|.-|+--|-+++.- |.+. ---|..-++++- +++.+|.+..=-=|-|-|+--..+.= +-=.
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~--G~dv--S~~Fp~VVKNVa--skn~EVKkLVyvYLlrYAEeqpdLAL-LSIn 111 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAK--GKDV--SLLFPAVVKNVA--SKNIEVKKLVYVYLLRYAEEQPDLAL-LSIN 111 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhc--CCcH--HHHHHHHHHHhh--ccCHHHHHHHHHHHHHHhhcCCCcee-eeHH
Confidence 356788887777787777777777644 3321 223555666664 56899988877777777774222110 0001
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhh
Q 000194 153 QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRW 232 (1880)
Q Consensus 153 ~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~ 232 (1880)
.+++++ .|.+.-.|-.|+.++..+= .| -..+-++-+|-.+.+||.+.||..|+.|+-.+-+.
T Consensus 112 tfQk~L----~DpN~LiRasALRvlSsIR--vp----~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL-------- 173 (968)
T KOG1060|consen 112 TFQKAL----KDPNQLIRASALRVLSSIR--VP----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL-------- 173 (968)
T ss_pred HHHhhh----cCCcHHHHHHHHHHHHhcc--hh----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC--------
Confidence 122222 4566666766665554321 11 11222334566788999999999999998765432
Q ss_pred HHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhC
Q 000194 233 RVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFL 312 (1880)
Q Consensus 233 ~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~ 312 (1880)
.++.+..+.+.+..-|.+.+ .-+.-+|+.++.++.-..=+.+.++|+++|..+...-+=+ | +.+|..|.+|+
T Consensus 174 d~e~k~qL~e~I~~LLaD~s-plVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWg----Q---vvlI~mL~RYA 245 (968)
T KOG1060|consen 174 DPEQKDQLEEVIKKLLADRS-PLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWG----Q---VVLINMLTRYA 245 (968)
T ss_pred ChhhHHHHHHHHHHHhcCCC-CcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhh----H---HHHHHHHHHHH
Confidence 12233344554445556664 5678888888887755445788899999997665422211 1 11233333333
Q ss_pred hhhHHHHHH---------------------------HHHHHHHHHhhcCC-CCcc-hHHHHHHHHHhhchhhhhh--hhh
Q 000194 313 RDRFVTNYL---------------------------KICMNHILTVLRIP-AERD-SGFIALGEMAGALDGELFH--YLP 361 (1880)
Q Consensus 313 ~~~f~~~yl---------------------------~~~~~~Ll~~L~~~-~~r~-~a~~alg~la~~v~~~~~p--~l~ 361 (1880)
..+|.++.. ++=+..|+..++.- .-|. +...+...+-- .+.| -..
T Consensus 246 R~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y----~lAP~~~~~ 321 (968)
T KOG1060|consen 246 RHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFY----HLAPKNQVT 321 (968)
T ss_pred HhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHH----hhCCHHHHH
Confidence 333322200 11111222221100 0121 11111111100 1111 122
Q ss_pred HHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHH-----HHHHhCCCChHHHH
Q 000194 362 TITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALE-----QITVSIPSLLPTIQ 436 (1880)
Q Consensus 362 ~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~-----~i~~~~p~l~~~i~ 436 (1880)
.|.+.+...|.. +..++.-+++++..++.....-|.||+.... -+.-++.....++ .++..-. -+.|.
T Consensus 322 ~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFf----v~ssDp~~vk~lKleiLs~La~esn--i~~IL 394 (968)
T KOG1060|consen 322 KIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFF----VRSSDPTQVKILKLEILSNLANESN--ISEIL 394 (968)
T ss_pred HHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceE----eecCCHHHHHHHHHHHHHHHhhhcc--HHHHH
Confidence 344444444422 2334456789999999887778899887531 1222333332222 1111000 00111
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCCh
Q 000194 437 DRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDK 516 (1880)
Q Consensus 437 ~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~ 516 (1880)
..+...|. ..|.+.++.|.++||.+.-.-....+....-++.++.+.++
T Consensus 395 rE~q~YI~-------------------------------s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde 443 (968)
T KOG1060|consen 395 RELQTYIK-------------------------------SSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDE 443 (968)
T ss_pred HHHHHHHh-------------------------------cCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccc
Confidence 11111110 01223557788888887322122223333344556776788
Q ss_pred HHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhc
Q 000194 517 ATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLA 596 (1880)
Q Consensus 517 ~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~ 596 (1880)
.|--+|+..+..++..++.. -.+++.+|....-+-.-+.-|.+++=-+++.....+.+
T Consensus 444 ~Vv~eaV~vIk~Llq~~p~~---------------------h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri- 501 (968)
T KOG1060|consen 444 LVVAEAVVVIKRLLQKDPAE---------------------HLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRI- 501 (968)
T ss_pred hhHHHHHHHHHHHHhhChHH---------------------HHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchh-
Confidence 88888888888888655411 12233333322111112344544444443211112222
Q ss_pred cHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHh
Q 000194 597 QADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLE 650 (1880)
Q Consensus 597 ~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~ 650 (1880)
-|++++.+...+.|+..+|+-..+.+-.+|--.++.. -+.+.+++.++.
T Consensus 502 ~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~-----~kll~~Yv~~L~ 550 (968)
T KOG1060|consen 502 APDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ-----TKLLVQYVFELA 550 (968)
T ss_pred chHHHHHHHHhhccccchhhHHHHHhhhhheEechhh-----HHHHHHHHHHHh
Confidence 2688999999999999999999999988887777654 344556655553
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00033 Score=89.50 Aligned_cols=311 Identities=15% Similarity=0.152 Sum_probs=189.1
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHH
Q 000194 29 ILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKV 108 (1880)
Q Consensus 29 l~~~l~s~~~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~ 108 (1880)
+|.+|.+.+.+.-. ...+++...+....++.. .+++...+...+++++...|.-++..+..++.-..+ ....+
T Consensus 43 lf~~L~~~~~e~v~---~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-~~~~~ 115 (503)
T PF10508_consen 43 LFDCLNTSNREQVE---LICDILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-AAQLL 115 (503)
T ss_pred HHHHHhhcChHHHH---HHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH-HHHHh
Confidence 88889866432222 123444444455565554 444556666788899999999999998888654311 11111
Q ss_pred --HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCc
Q 000194 109 --SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAST 186 (1880)
Q Consensus 109 --~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~ 186 (1880)
......+..++. +.|.+|.+.|++++.+|+...... ..+++......+.-+-...++..|.-+..++..++..++.
T Consensus 116 ~~~~l~~~i~~~L~-~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~ 193 (503)
T PF10508_consen 116 VDNELLPLIIQCLR-DPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPE 193 (503)
T ss_pred cCccHHHHHHHHHc-CCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHH
Confidence 234556777774 679999999999999999863211 1222222222222222233455677788888899988888
Q ss_pred cchhch-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchh--hHHHHHHHHHHHHHhhccCC-CChhHHHHHHH
Q 000194 187 VFNVHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR--WRVQWYYRMFEATQDGLGRN-APVHSIHGSLL 262 (1880)
Q Consensus 187 ~l~~~l-~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~--~~~~~~~~~l~~~~~~l~~~-~~~~~~~~al~ 262 (1880)
.+.-.. ..+++.++..+.+.+..||..|.+.+..+... . .... .+...+++++..+...-.++ ...-..-|.+.
T Consensus 194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~-~-~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~ 271 (503)
T PF10508_consen 194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET-P-HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMK 271 (503)
T ss_pred HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC-h-hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHH
Confidence 764333 24999999999999999999999988877651 1 1100 11122334444333332232 11122334444
Q ss_pred HHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh-hhHH-H---HHHHHHHHHHHHhhcCCC-
Q 000194 263 AVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR-DRFV-T---NYLKICMNHILTVLRIPA- 336 (1880)
Q Consensus 263 ~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~-~~f~-~---~yl~~~~~~Ll~~L~~~~- 336 (1880)
.++.+....+..+...++.++..+....++.++..+..|++++|.++.... ..+. . .-++.++..+.....+.+
T Consensus 272 f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~ 351 (503)
T PF10508_consen 272 FFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST 351 (503)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence 555565544445556778888888888899999999999999999985433 2222 1 122334444444444433
Q ss_pred -CcchHHHHHHHHHh
Q 000194 337 -ERDSGFIALGEMAG 350 (1880)
Q Consensus 337 -~r~~a~~alg~la~ 350 (1880)
-|..++.|++.+..
T Consensus 352 ~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 352 ELKLRALHALASILT 366 (503)
T ss_pred HHHHHHHHHHHHHHh
Confidence 36778888888753
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.018 Score=72.17 Aligned_cols=408 Identities=18% Similarity=0.146 Sum_probs=202.8
Q ss_pred hhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHH
Q 000194 290 LEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHL 367 (1880)
Q Consensus 290 ~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l 367 (1880)
++|.+..|...|+.+++.++. .+.. +.+.|.+-..|+..+ .|-.|..|.-.+...+++-+.-|++..
T Consensus 116 L~s~nq~vVglAL~alg~i~s---~Ema----rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~---- 184 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNICS---PEMA----RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAF---- 184 (866)
T ss_pred ccCCCeeehHHHHHHhhccCC---HHHh----HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHH----
Confidence 467788899999999998763 2333 455555556665443 588999999998888887554444443
Q ss_pred HHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHhCCCChHHHHHHHH
Q 000194 368 REAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMF-------SAGLSTTLVDALEQITVSIPSLLPTIQDRLL 440 (1880)
Q Consensus 368 ~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~-------~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll 440 (1880)
+..|.+++..+-...+..+..+++. +++...|...+.+.++ ..+.+++.-. ..+| .|-+|=+++
T Consensus 185 ~~lL~ek~hGVL~~~l~l~~e~c~~-~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv------~gi~--dPFLQi~iL 255 (866)
T KOG1062|consen 185 RKLLCEKHHGVLIAGLHLITELCKI-SPDALSYFRDLVPSLVKILKQLTNSGYSPEYDV------HGIS--DPFLQIRIL 255 (866)
T ss_pred HHHHhhcCCceeeeHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCc------cCCC--chHHHHHHH
Confidence 3344344444444566666666654 3333334444433332 1222211100 0111 133444445
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc----ccCCCcchhhHHHHHhhhcc-CCC
Q 000194 441 DCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF----NFKGHDLLEFARDSVVLYLD-DED 515 (1880)
Q Consensus 441 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~----~~~~~~l~~~v~~~~~~~l~-~~~ 515 (1880)
..+. +.|+... + ....=.+.|+.. +-+...-.-.+-+||..-++ .++
T Consensus 256 rlLr--iLGq~d~---------------------d-----aSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~ 307 (866)
T KOG1062|consen 256 RLLR--ILGQNDA---------------------D-----ASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSN 307 (866)
T ss_pred HHHH--HhcCCCc---------------------c-----HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCC
Confidence 4444 1222100 0 000111222222 11111111233445544433 346
Q ss_pred hHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhh
Q 000194 516 KATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFL 595 (1880)
Q Consensus 516 ~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L 595 (1880)
.+.|..|+..+++++.+.- .++|.-++..|...-..|+..
T Consensus 308 ~~LrvlainiLgkFL~n~d----------------------------------------~NirYvaLn~L~r~V~~d~~a 347 (866)
T KOG1062|consen 308 SGLRVLAINILGKFLLNRD----------------------------------------NNIRYVALNMLLRVVQQDPTA 347 (866)
T ss_pred chHHHHHHHHHHHHhcCCc----------------------------------------cceeeeehhhHHhhhcCCcHH
Confidence 6777777777777665332 222222222221101112222
Q ss_pred ccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcc
Q 000194 596 AQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCER 675 (1880)
Q Consensus 596 ~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~ 675 (1880)
.| .+=..+..|++|++..+|+.|+++.-.|...+ .| +.++.+++..|..+ +..-|...+.-+..+++...+
T Consensus 348 vq-rHr~tIleCL~DpD~SIkrralELs~~lvn~~--Nv----~~mv~eLl~fL~~~--d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 348 VQ-RHRSTILECLKDPDVSIKRRALELSYALVNES--NV----RVMVKELLEFLESS--DEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred HH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cH----HHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHhcCC
Confidence 11 23345677889999999999999999888765 23 33333444444444 566677888888899988766
Q ss_pred cccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHH-HHhcCCchhhHHHHHHHH
Q 000194 676 LIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE-ALLDGAAVTKREVAVSTL 754 (1880)
Q Consensus 676 ~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~-~l~d~~~~~~r~~Al~~L 754 (1880)
.-+=|++.++.++...=.- .+.++..+.+.-| +...++.-..-...+.-.+.. .+.+.+....-..|.|++
T Consensus 419 ~k~W~idtml~Vl~~aG~~-----V~~dv~~nll~LI---a~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~I 490 (866)
T KOG1062|consen 419 DKRWHIDTMLKVLKTAGDF-----VNDDVVNNLLRLI---ANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCI 490 (866)
T ss_pred cchhHHHHHHHHHHhcccc-----cchhhHHHHHHHH---hcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHh
Confidence 5555677766665443211 1333444433322 222122211111222222221 122222233457899999
Q ss_pred HHHHhhc---CcccccCC-cchHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHc
Q 000194 755 GQVVQST---GYVITPYN-EYPQLLGLLLKMLNGEL-VWSTRREVLKVLGIMG 802 (1880)
Q Consensus 755 g~l~~~~---~~~i~p~~-~~p~ll~~Ll~~L~~~~-~~~vr~~~l~~lg~lg 802 (1880)
|..-... +..-.|.. .-.+++..+...+.... +..++.=++.++-.+.
T Consensus 491 GEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLS 543 (866)
T KOG1062|consen 491 GEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLS 543 (866)
T ss_pred hhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 9644221 11112221 12468888888885443 4566655655555543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.044 Score=77.54 Aligned_cols=499 Identities=15% Similarity=0.113 Sum_probs=256.7
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh-----hhhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL-----DVQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~-----~~~~~~~~~ 1364 (1880)
.++....+.|.|..|+.+++...... +........+..+|...|+.+.+...+....... ........+
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 373 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYA------PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAY 373 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45667778888889988887665432 2334566778889999999999988877543211 112234457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChh
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWD 1444 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd 1444 (1880)
.+.|++++|+..|++.....++. ......+..|+...|+++.-.......... +++. .......+.+..+.|+++
T Consensus 374 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~-~~~~~~l~~~~~~~~~~~ 448 (899)
T TIGR02917 374 LALGDFEKAAEYLAKATELDPEN---AAARTQLGISKLSQGDPSEAIADLETAAQL-DPEL-GRADLLLILSYLRSGQFD 448 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhh-CCcc-hhhHHHHHHHHHhcCCHH
Confidence 88899999999999887643332 345567778888999987655444432211 1111 111224456777889998
Q ss_pred hHHHHHhhcCCCC--cc-hhhccccccccCCCCCchHHHHHHHHHHhcC-hhhhHHHHHHHHHHh-HhhhhHHHHHHhhc
Q 000194 1445 QMAEYVSRLDDGD--ES-KLRGLGNTAANGDGSSNGTFFRAVLLVRRGK-VLESYERAYSNMVRV-QQLSELEEVIDYCT 1519 (1880)
Q Consensus 1445 ~~~~~~~~~~~~~--~~-~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~-~~esy~ray~~l~~l-q~L~ELeE~i~~~~ 1519 (1880)
........+.... .. .+..++..... .+.+-+|+....+.. ....+..++..+..+ ....+.++.+++..
T Consensus 449 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 449 KALAAAKKLEKKQPDNASLHNLLGAIYLG-----KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHh-----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8777666543211 00 01111111100 001111111111100 000001111111111 11122222222111
Q ss_pred C-CCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 000194 1520 L-PVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQY 1598 (1880)
Q Consensus 1520 ~-~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~ 1598 (1880)
. ...++........+.... ....+++.-...+ +..+-....+...|+.++....+.|+++.|...+.++...
T Consensus 524 ~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~A~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 524 KVLTIDPKNLRAILALAGLY-----LRTGNEEEAVAWL--EKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHhCcCcHHHHHHHHHHH-----HHcCCHHHHHHHH--HHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 0 000000000000011110 0112222111111 1111112244678888999999999999999988887654
Q ss_pred CCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHH
Q 000194 1599 DPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKL 1678 (1880)
Q Consensus 1599 ~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~l 1678 (1880)
.+ ..+......+..+...|+ ..+|+..+++.+...... ......++.++...
T Consensus 597 ~~----------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~ 648 (899)
T TIGR02917 597 AP----------DSPEAWLMLGRAQLAAGD---LNKAVSSFKKLLALQPDS---------------ALALLLLADAYAVM 648 (899)
T ss_pred CC----------CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHc
Confidence 33 235667777888888884 678888888766431100 01112234444444
Q ss_pred hhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH---------HHhhhccCCCCc------------
Q 000194 1679 GSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV---------MSHYTLRGLPSV------------ 1737 (1880)
Q Consensus 1679 g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~---------~~~~~~~~~~~~------------ 1737 (1880)
|+ .++....|+++.+.+|+...+|..++....+. ++...... +..
T Consensus 649 ~~-------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 649 KN-------------YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYL 714 (899)
T ss_pred CC-------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHH
Confidence 33 46677888888888888888888777664321 11000000 100
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHH-HHHHHHHHhccCCC
Q 000194 1738 APQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWL-VVLPQIIARIHSNN 1816 (1880)
Q Consensus 1738 ~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl-~~ipQLiaRi~~~~ 1816 (1880)
...-...|++.|-+++... ++. +....+..++...|...+..+.+.+.+..-|.+... ..+-.+..+.+..+
T Consensus 715 ~~g~~~~A~~~~~~~~~~~-----~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKRA-----PSS--QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYD 787 (899)
T ss_pred HCCCHHHHHHHHHHHHhhC-----CCc--hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 0112357888888888764 222 556778888888898888877777777766655432 22223333333322
Q ss_pred hhHHHHHHHHHHHHHhhCchhhH--HHHHHH-hcCCcHHHHHHHHHHHHHHhhccc
Q 000194 1817 RAVRELIQSLLVRIGQSHPQALM--YPLLVA-CKSISNLRRAAAQEVVDKVRQHSG 1869 (1880)
Q Consensus 1817 ~~v~~~l~~lL~~i~~~hPqa~l--y~L~~~-~kS~~~~R~~~a~~Il~~~~~~~~ 1869 (1880)
-...++.++.+.+|.... ..+... .+... ..|...++++-...|
T Consensus 788 -----~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 788 -----KAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD----PRALEYAEKALKLAP 834 (899)
T ss_pred -----HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc----HHHHHHHHHHHhhCC
Confidence 233445555566665432 222222 22222 227777777765444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.04 Score=72.21 Aligned_cols=176 Identities=15% Similarity=0.175 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchh-hHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcC
Q 000194 706 SGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVT-KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNG 784 (1880)
Q Consensus 706 ~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~-~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~ 784 (1880)
.++-.++..++...|..+...++.+-..++..|++..+.. .-...+..+..+.-..+..+.| .-+.++.++..+++
T Consensus 751 rgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~---~~~~l~~l~~~~~s 827 (1549)
T KOG0392|consen 751 RGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP---LGSLLPRLFFFVRS 827 (1549)
T ss_pred hhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh---hhhhhhHHHHhccc
Confidence 4556678888888888888888888888888887433222 1112223333333222332333 12566677777765
Q ss_pred CCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHH
Q 000194 785 ELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMR 864 (1880)
Q Consensus 785 ~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~ 864 (1880)
. +..+|.++.+++|...... +.+ -...+++.++.
T Consensus 828 ~-~~a~r~~~ar~i~~~~k~~-----------------------------~~e----------------~m~~v~~~~~~ 861 (1549)
T KOG0392|consen 828 I-HIAVRYAAARCIGTMFKSA-----------------------------TRE----------------TMATVINGFLP 861 (1549)
T ss_pred c-hHHHHHHHHHHHHHHHHHH-----------------------------HHH----------------HHHHHHHHHhh
Confidence 4 7899999999999864210 000 01467788888
Q ss_pred HhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHH
Q 000194 865 ILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV 930 (1880)
Q Consensus 865 ~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~ 930 (1880)
.+.|.+..+.+..+.+.+..+...++...+||.+-++|.++..+.+..+++|+.....++.++..+
T Consensus 862 ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~ 927 (1549)
T KOG0392|consen 862 LLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLL 927 (1549)
T ss_pred hccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhccc
Confidence 888776656666777777777777777789999999999999998888888998888877777544
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.1e-05 Score=74.79 Aligned_cols=92 Identities=15% Similarity=0.110 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhc
Q 000194 169 RRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGL 248 (1880)
Q Consensus 169 ~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l 248 (1880)
.|.+++..|.+++.+.+..+.+|++.|++.|+.++.|++.+||..|+++|.++...... ..-.++..+++.+...+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~----~~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG----EILPYFNEIFDALCKLS 77 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999876542 22336788999999888
Q ss_pred cCCCChhHHHHHHHHHHH
Q 000194 249 GRNAPVHSIHGSLLAVGE 266 (1880)
Q Consensus 249 ~~~~~~~~~~~al~~l~~ 266 (1880)
.+++ ..++.||- .|..
T Consensus 78 ~D~d-~~Vr~~a~-~Ld~ 93 (97)
T PF12755_consen 78 ADPD-ENVRSAAE-LLDR 93 (97)
T ss_pred cCCc-hhHHHHHH-HHHH
Confidence 8885 56677763 4433
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0019 Score=80.89 Aligned_cols=300 Identities=14% Similarity=0.146 Sum_probs=192.0
Q ss_pred HHHHHHHHHcCCC--Cch--hhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHh-----hh--cCCCh-hhhhhHHHH
Q 000194 25 ALNRILADLCTHG--NPK--EGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISG-----LL--ESNDA-AENLGALRA 92 (1880)
Q Consensus 25 ~~~~l~~~l~s~~--~~~--~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~-----l~--~s~~~-~~r~~~i~a 92 (1880)
++.++++...+.. +.. ......+...+....+.++.+.-.++.++++..+.. -+ .++.. .....-+..
T Consensus 91 lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (415)
T PF12460_consen 91 LVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVIL 170 (415)
T ss_pred HHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHH
Confidence 4555665554332 111 223444667777778889988877777777665440 01 11111 112223333
Q ss_pred HhHh-hccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHH
Q 000194 93 IDEL-IDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRF 171 (1880)
Q Consensus 93 i~~L-i~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~ 171 (1880)
+..+ ..++..-..+....+.+-+..+.-...+...+..++++++.|+..-. ..+.++..++...+-+........|.
T Consensus 171 ~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~--~~~~l~~~l~~~~~~~~~~~~~~~~~ 248 (415)
T PF12460_consen 171 FSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWP--DDDDLDEFLDSLLQSISSSEDSELRP 248 (415)
T ss_pred HHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHhhhcccCCcchhH
Confidence 3333 44442222122333433333333235568889999999998887511 12233333444433332334456677
Q ss_pred HHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh---hch--h----hHHHHHHHHHH
Q 000194 172 AAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK---RET--R----WRVQWYYRMFE 242 (1880)
Q Consensus 172 aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~---r~~--~----~~~~~~~~~l~ 242 (1880)
.++.++..++.+.----.|...++++.++..+.| +.+...|+++++.++..... ++. . ++.+++..++|
T Consensus 249 ~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p 326 (415)
T PF12460_consen 249 QALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLP 326 (415)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHH
Confidence 8888887777663333346667788888888888 67788899999887654221 111 1 35566778888
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHHHcch-hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH
Q 000194 243 ATQDGLGRNAPVHSIHGSLLAVGELLRNTG-EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL 321 (1880)
Q Consensus 243 ~~~~~l~~~~~~~~~~~al~~l~~ll~~~~-~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl 321 (1880)
.+.++..+.+ .+.+..-+.||.-++.+.+ +.+.++++++++.++..++..+..++.+++.++..+..-.++.+.+ |+
T Consensus 327 ~L~~~~~~~~-~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~-hl 404 (415)
T PF12460_consen 327 KLLEGFKEAD-DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISE-HL 404 (415)
T ss_pred HHHHHHhhcC-hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHH-HH
Confidence 8888888764 3578888899999999654 6788999999999999999999999999999999998888765554 89
Q ss_pred HHHHHHHHH
Q 000194 322 KICMNHILT 330 (1880)
Q Consensus 322 ~~~~~~Ll~ 330 (1880)
+.+++.|+.
T Consensus 405 ~sLI~~LL~ 413 (415)
T PF12460_consen 405 SSLIPRLLK 413 (415)
T ss_pred HHHHHHHHh
Confidence 999998875
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.036 Score=68.55 Aligned_cols=231 Identities=23% Similarity=0.205 Sum_probs=118.3
Q ss_pred HHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHH
Q 000194 483 QLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELV 562 (1880)
Q Consensus 483 ~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 562 (1880)
-.||.-|++|.- +.+..-+-+-+..++.+.-+.||+-|+..+-+++..=+ ..+....
T Consensus 127 giAL~GLS~fvT--pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP---------------------eAlr~~F 183 (877)
T KOG1059|consen 127 GLALSGLSCIVT--PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP---------------------EALRPCF 183 (877)
T ss_pred hheecccccccC--chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh---------------------HhHhhhH
Confidence 568888888732 12222222334577888889999988876666553211 1122222
Q ss_pred HHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHH
Q 000194 563 EKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHL 642 (1880)
Q Consensus 563 ~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l 642 (1880)
+.|..-|.|+++.|..+|+..++.|+..||...+| |...+
T Consensus 184 ---------------------------------------prL~EkLeDpDp~V~SAAV~VICELArKnPknyL~-LAP~f 223 (877)
T KOG1059|consen 184 ---------------------------------------PRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ-LAPLF 223 (877)
T ss_pred ---------------------------------------HHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-ccHHH
Confidence 23334567888889999999999999999876543 22222
Q ss_pred HHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHh---c
Q 000194 643 IQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARV---G 719 (1880)
Q Consensus 643 ~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~---~ 719 (1880)
..+++ .+.+.+- -..-+.+++.|.---|.+-+..++++ ...+.. ..-.+-+.+|+..+..+ .
T Consensus 224 fkllt---tSsNNWm-LIKiiKLF~aLtplEPRLgKKLiepl----t~li~s-------T~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 224 YKLLV---TSSNNWV-LIKLLKLFAALTPLEPRLGKKLIEPI----TELMES-------TVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred HHHHh---ccCCCee-hHHHHHHHhhccccCchhhhhhhhHH----HHHHHh-------hHHHHHHHHHHHHheeehhcc
Confidence 22332 2212221 12233344444322233322323332 222221 11123334565554432 1
Q ss_pred C-CchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000194 720 G-FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVL 798 (1880)
Q Consensus 720 g-~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~l 798 (1880)
| .+-..-+.-.+.-+...+.| ++...|=.++-+++.+...+...+.. --+.+++.|. +.+..+|..|+.++
T Consensus 289 g~~d~~asiqLCvqKLr~fied-sDqNLKYlgLlam~KI~ktHp~~Vqa------~kdlIlrcL~-DkD~SIRlrALdLl 360 (877)
T KOG1059|consen 289 GMSDHSASIQLCVQKLRIFIED-SDQNLKYLGLLAMSKILKTHPKAVQA------HKDLILRCLD-DKDESIRLRALDLL 360 (877)
T ss_pred CCCCcHHHHHHHHHHHhhhhhc-CCccHHHHHHHHHHHHhhhCHHHHHH------hHHHHHHHhc-cCCchhHHHHHHHH
Confidence 1 11111111122222223333 36677888888889888766544332 2345566664 45788998888776
Q ss_pred H
Q 000194 799 G 799 (1880)
Q Consensus 799 g 799 (1880)
-
T Consensus 361 ~ 361 (877)
T KOG1059|consen 361 Y 361 (877)
T ss_pred H
Confidence 3
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.32 Score=68.76 Aligned_cols=62 Identities=23% Similarity=0.254 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~ 1643 (1880)
...|..++.+..+.|+++.|...+.++....|. ........+.+....|+ ..+|+..+++..
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~ 560 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK----------NLRAILALAGLYLRTGN---EEEAVAWLEKAA 560 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 445555566666666666666655555443321 23344445555555553 345555555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00023 Score=81.79 Aligned_cols=183 Identities=15% Similarity=0.141 Sum_probs=124.7
Q ss_pred CCCcchhHHHHHHHHHHHHhhc-----CccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHH
Q 000194 163 GDRVEYRRFAAVLILKEMAENA-----STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY 237 (1880)
Q Consensus 163 ~~~~~~~R~aA~~~l~~la~~~-----p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~ 237 (1880)
.+.+|..|..|+.-|+.+..+. +..+.+++.++++.+...+.|....|-..|+.++..+...+.. ....+.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~----~~~~~~ 92 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS----HFEPYA 92 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG----GGHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH----hHHHHH
Confidence 6788999999999999998876 3345566777778999999999999999999999888776653 234568
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHH-HHHHHHHhhcchhHHHHHHHHHhHhHhhhCh---
Q 000194 238 YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREV-AEIVLRYLEHRDRLVRLSITSLLPRIAHFLR--- 313 (1880)
Q Consensus 238 ~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i-~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~--- 313 (1880)
..++|.++..+++++ ..++.+|..+|..++..++ +...+ ...+.....++++.+|..++..+..+....+
T Consensus 93 ~~~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~ 166 (228)
T PF12348_consen 93 DILLPPLLKKLGDSK-KFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDS 166 (228)
T ss_dssp HHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchH
Confidence 889999999888875 5778888889999988554 11233 4455566789999999999998888765444
Q ss_pred hhHHH-HHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh
Q 000194 314 DRFVT-NYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE 355 (1880)
Q Consensus 314 ~~f~~-~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~ 355 (1880)
..+.. .+++.+.+.+...+.+++ .|..|-.++..+....|+.
T Consensus 167 ~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 167 SVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred hhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 33322 245788888888887654 5899999999998888874
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.017 Score=72.54 Aligned_cols=343 Identities=11% Similarity=0.112 Sum_probs=192.4
Q ss_pred hHHHHHHHHHHHHHHHhhhcC-CChhhhhhHHHHHhHhhccccCcc-hhHHHHHHH--HHHhhcc-------cCC--ChH
Q 000194 60 GEAFSRFMDQLYDRISGLLES-NDAAENLGALRAIDELIDVALGEN-ASKVSKFSN--YMRTVFE-------VKR--DRE 126 (1880)
Q Consensus 60 ~~~~~~~~~~l~~~i~~l~~s-~~~~~r~~~i~ai~~Li~~~~~~~-~~~~~~~~~--~L~~~l~-------~~~--d~~ 126 (1880)
++-+......|.+++...+++ .+...-.+.+.++-.+++-...+. ......+.+ .+..++. ... |..
T Consensus 33 ~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~ 112 (415)
T PF12460_consen 33 PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDR 112 (415)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchH
Confidence 334566666666666666654 233344445555555544321111 111112211 1222221 122 468
Q ss_pred HHHHHHHHHHHHhhhC-CCCchhHHHHHHHHHH-----hhhcCCCc---chhHHHHHHHHHHHHhhcCccchhchHHHHH
Q 000194 127 ILVLASKVLGHLARAG-GAMTADEVEFQVKMAL-----DWLRGDRV---EYRRFAAVLILKEMAENASTVFNVHVAEFVD 197 (1880)
Q Consensus 127 v~~~aa~~l~~L~~~~-g~~~~~~v~~~~~~~~-----~~l~~~~~---~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~ 197 (1880)
+...++..++.++..- .....++++......+ .-++.+.. +..+..-.++-+.++.--|+.-.|...+++.
T Consensus 113 ~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~ 192 (415)
T PF12460_consen 113 VLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQ 192 (415)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHH
Confidence 8888888888887752 2223334333333222 00011111 1222222333344444445555567778888
Q ss_pred HHHHHh-cCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhH
Q 000194 198 AIWVAL-RDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMM 276 (1880)
Q Consensus 198 ~i~~~l-~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~ 276 (1880)
.+.... ...++.+|.+++.+++.++.-.. .. +.+..+++.....+.+..+...+..++.++.-+..+-=--..
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~LvNK~~--~~----~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLVNKWP--DD----DDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCC--Ch----hhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 777644 45558889988887776543211 11 134445554444441111233455555554333221000011
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChh------------hHHHHHHHHHHHHHHHhhcCCC--CcchHH
Q 000194 277 SRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRD------------RFVTNYLKICMNHILTVLRIPA--ERDSGF 342 (1880)
Q Consensus 277 ~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~------------~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~ 342 (1880)
|...++...++..+++ +.+...+...++.+....++ -+-..++..++|.+++..+... .|...+
T Consensus 267 ~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL 344 (415)
T PF12460_consen 267 PLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYL 344 (415)
T ss_pred chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHH
Confidence 3444455566666666 66777777777777654221 1223467778888877776544 478899
Q ss_pred HHHHHHHhhchhhh-hhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 000194 343 IALGEMAGALDGEL-FHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFS 410 (1880)
Q Consensus 343 ~alg~la~~v~~~~-~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~ 410 (1880)
.|++.+...++..+ .++++.+++.+.++|...+.+....+++++..+.+.-.+.+.+|+..+++.|++
T Consensus 345 ~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 345 TALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 99999999999874 499999999999999665554556788888888877666788899999998774
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00018 Score=92.37 Aligned_cols=218 Identities=14% Similarity=0.152 Sum_probs=143.1
Q ss_pred cchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHH
Q 000194 166 VEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQ 245 (1880)
Q Consensus 166 ~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~ 245 (1880)
....|.+|+.+|..++....+ ...+..|+|.++..++|+.+.||-.|..+|.+++..+.+-.+....-+..-++|.+.
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~ 513 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLN 513 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhH
Confidence 345688888888888876544 346889999999999999999999999999999988875332222223345667666
Q ss_pred hhccCCCChhHHHHHHHHHHHHHH-------------cch----------------hhhHHHHHHHHHHHHHHhhcchhH
Q 000194 246 DGLGRNAPVHSIHGSLLAVGELLR-------------NTG----------------EFMMSRYREVAEIVLRYLEHRDRL 296 (1880)
Q Consensus 246 ~~l~~~~~~~~~~~al~~l~~ll~-------------~~~----------------~~~~~~~~~i~~~ll~~~~~~~~~ 296 (1880)
.-+.+++..-+|.+-...|+.|+. +.| .....-..-+-+.+..++.+.++.
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~ 593 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPI 593 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchH
Confidence 655553222223322223333222 111 011122222334566667788899
Q ss_pred HHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh-hhhhhhHHHHHHHHhhcC
Q 000194 297 VRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE-LFHYLPTITSHLREAIAP 373 (1880)
Q Consensus 297 Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~-~~p~l~~i~~~l~~~l~~ 373 (1880)
||++.++.|..|+.|=+.+ .-=+-++++|.+.|.+.+ .|++-|+.|.-++..||.. .. +.+++.++++|++
T Consensus 594 Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~s---eyllPLl~Q~ltD 667 (1431)
T KOG1240|consen 594 VKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVS---EYLLPLLQQGLTD 667 (1431)
T ss_pred HHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHH---HHHHHHHHHhccC
Confidence 9999999999998753321 112568889999996543 4889999999888889874 33 3456777889987
Q ss_pred CCCCCCchHHHHHHHHHH
Q 000194 374 RRGKPSLEALACVGNIAR 391 (1880)
Q Consensus 374 ~~~~~~~~a~~~l~~la~ 391 (1880)
...-+-..|+.|+..|++
T Consensus 668 ~EE~Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 668 GEEAVIVSALGSLSILIK 685 (1431)
T ss_pred cchhhHHHHHHHHHHHHH
Confidence 654444567777776665
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0002 Score=82.35 Aligned_cols=180 Identities=19% Similarity=0.236 Sum_probs=118.4
Q ss_pred CCCCHhHHHHHHHHHHhhhcCC-----cccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHH
Q 000194 609 NDEDFDVREYAISVAGRLSEKN-----PAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAP 683 (1880)
Q Consensus 609 ~D~~~~VR~~a~~~l~~l~~~~-----p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~ 683 (1880)
.+.+.+.|..|+.-|.+++..+ +..+.+.+++++..+...+.+. -......|+.++..++...+..+.||++.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~--Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL--RSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-----HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 5667788888888888777766 2233344453333333333221 23455689999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhH-HHHHHHHHhcCCchhhHHHHHHHHHHHHhhcC
Q 000194 684 IHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISEL-MPLIVEALLDGAAVTKREVAVSTLGQVVQSTG 762 (1880)
Q Consensus 684 il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l-~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~ 762 (1880)
+++.|+..+.+. ...++..+..|+..+....+ +.+.+ .+.+...+.+. +...|..++..+..++...+
T Consensus 95 ~l~~Ll~~~~~~-----~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 95 LLPPLLKKLGDS-----KKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSK-NPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHGGG--------HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHccc-----cHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHcc
Confidence 999999999975 56788888899998887644 33455 55666666654 68899999999999998888
Q ss_pred ---cccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 763 ---YVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 763 ---~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
..+.....++.+.+.+...+.+ .+++||..+-+++..+-
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D-~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSD-ADPEVREAARECLWALY 205 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTS-S-HHHHHHHHHHHHHHH
T ss_pred chHhhhcccchHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHH
Confidence 3333322346788888888864 58999999999988763
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.059 Score=63.41 Aligned_cols=179 Identities=18% Similarity=0.258 Sum_probs=117.2
Q ss_pred hHHHHHHHhCCCCHhHHHHHHHHHHhhhc----CCcc--cccHHHHHH-HHHHHHH-HhcCCCChHhHHHHHHHHHHHHH
Q 000194 600 CLSAIFAALNDEDFDVREYAISVAGRLSE----KNPA--YVLPALRRH-LIQLLTY-LEQSSADNKCREESAKLLGCLIR 671 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~----~~p~--~v~p~l~~~-l~~~l~~-l~~~~~~~~~r~~a~~~L~~l~~ 671 (1880)
....+...+.|....+|..+...+|.+.. ..|. .....+-.. +...+.. .+.+-...+++.+|.+.||.+..
T Consensus 434 aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ 513 (728)
T KOG4535|consen 434 AANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ 513 (728)
T ss_pred HHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence 34556677788889999999998887654 3332 111111111 1111111 11111234678889999999987
Q ss_pred hCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcC--CchhhhHHhHHHHHHHHHhcCCchhhHHH
Q 000194 672 NCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG--FGMRQYISELMPLIVEALLDGAAVTKREV 749 (1880)
Q Consensus 672 ~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g--~~~~~~~~~l~p~l~~~l~d~~~~~~r~~ 749 (1880)
......++-+..+++.-+..+.+.........|+-++++++|.|...-. -+-.++.++++|+++..+.+..+..+|..
T Consensus 514 vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~ 593 (728)
T KOG4535|consen 514 FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIR 593 (728)
T ss_pred HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeeh
Confidence 7666666666667766666655443223466789999999999986533 34578899999999999998878889999
Q ss_pred HHHHHHHHHhhcCcccccCCcchHHHHHHHHHh
Q 000194 750 AVSTLGQVVQSTGYVITPYNEYPQLLGLLLKML 782 (1880)
Q Consensus 750 Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L 782 (1880)
|..+|..-....|+ +.+||-....++.+|
T Consensus 594 AA~aL~vp~~re~~----~d~~~Lsw~~lv~aL 622 (728)
T KOG4535|consen 594 AAAALSVPGKREQY----GDQYALSWNALVTAL 622 (728)
T ss_pred hhhhhcCCCCcccc----hhHHhHHHHHHHHHH
Confidence 99999876554443 234555666666555
|
|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.035 Score=69.35 Aligned_cols=258 Identities=15% Similarity=0.170 Sum_probs=152.2
Q ss_pred hhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHh-----cCCchhHHHH-HHHHHHHHHHHHhhhchhhHHHHHH-HH
Q 000194 168 YRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL-----RDPTLAVRER-AVEALRACLRVIEKRETRWRVQWYY-RM 240 (1880)
Q Consensus 168 ~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l-----~D~~~~VR~a-A~~al~~~~~~i~~r~~~~~~~~~~-~~ 240 (1880)
+.|=+|=-++..+-+.-...+.|++-.++....... .|-+..+++. ...|.+.....+.+ .-...+|+. .+
T Consensus 412 ~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~--~~dF~~Wl~~~l 489 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSN--ILDFDKWLQEAL 489 (978)
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHhh
Confidence 455555555555555555555565555554444433 2334445544 45555554444432 113456764 45
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHHHH-cchhhhHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHhHhHh---hhChhh
Q 000194 241 FEATQDGLGRNAPVHSIHGSLLAVGELLR-NTGEFMMSRYREVAEIVLRYLEHR-DRLVRLSITSLLPRIA---HFLRDR 315 (1880)
Q Consensus 241 l~~~~~~l~~~~~~~~~~~al~~l~~ll~-~~~~~~~~~~~~i~~~ll~~~~~~-~~~Vr~~~~~~i~~la---~~~~~~ 315 (1880)
+|++.. ..+..+-.|...+..+|.=+. ...+.+.+ -++..++..+++. +..||-++..++..+. .|.++.
T Consensus 490 lpEl~~--~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~---l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~ds 564 (978)
T KOG1993|consen 490 LPELAN--DHGNSRIIRRRVAWILGQWVSVQQKLELKP---LLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDS 564 (978)
T ss_pred CHHhhh--cccchhHHHHHHHHHHhhhhheechHhHHH---HHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhh
Confidence 666652 111123445555566776555 22222222 2344556666665 7788999988888776 477888
Q ss_pred HHHHHHHHHHHHHHHhhcCC---CCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCC--CchHHHHHHHHH
Q 000194 316 FVTNYLKICMNHILTVLRIP---AERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP--SLEALACVGNIA 390 (1880)
Q Consensus 316 f~~~yl~~~~~~Ll~~L~~~---~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~--~~~a~~~l~~la 390 (1880)
|.+ |++.+...+...+..- +.|...+..+|.+...+++.+.||...|++.+-.--......+ +.+.+..+-.++
T Consensus 565 Flp-~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV 643 (978)
T KOG1993|consen 565 FLP-YLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLV 643 (978)
T ss_pred hhh-hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHH
Confidence 875 8888888888888643 3588999999999999999888998887765544332222222 346677888899
Q ss_pred HHhCC---CchHHHHHHHHHHHhc--C----CCHHHHHHHHHHHHhCCCChH
Q 000194 391 RAMGP---VMEPHVRGLLDIMFSA--G----LSTTLVDALEQITVSIPSLLP 433 (1880)
Q Consensus 391 ~~~g~---~~~~~l~~ll~~l~~~--~----ls~~l~~~l~~i~~~~p~l~~ 433 (1880)
.++|. .+.|++-.+++.-..- + +.++..+-+...-.++|.+-|
T Consensus 644 ~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p 695 (978)
T KOG1993|consen 644 NALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTP 695 (978)
T ss_pred HHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCH
Confidence 99996 3667776666543221 1 233334444444445554443
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00013 Score=69.44 Aligned_cols=88 Identities=20% Similarity=0.078 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCc
Q 000194 128 LVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPT 207 (1880)
Q Consensus 128 ~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~ 207 (1880)
++.+..+|...+..-|....++++..++.++..+ ++.+++.|++|+..|..++..+...+.+|+++|++.+++.+.|++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCF-DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3445556666665555567889999999999877 567778999999999999999999999999999999999999999
Q ss_pred hhHHHHHHH
Q 000194 208 LAVRERAVE 216 (1880)
Q Consensus 208 ~~VR~aA~~ 216 (1880)
+.||.+|.-
T Consensus 82 ~~Vr~~a~~ 90 (97)
T PF12755_consen 82 ENVRSAAEL 90 (97)
T ss_pred hhHHHHHHH
Confidence 999998843
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.11 Score=69.95 Aligned_cols=132 Identities=17% Similarity=0.286 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcch-hhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccc
Q 000194 555 RRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDD-FLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY 633 (1880)
Q Consensus 555 ~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~-~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~ 633 (1880)
.+.++..+..++.. +.+|...+|..++.+|+.-...|+ .|+.+++-..+-.-++|.+..||++|++++|+.+-.+|..
T Consensus 811 ~~sfD~yLk~Il~~-l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~ 889 (1692)
T KOG1020|consen 811 SQSFDPYLKLILSV-LGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL 889 (1692)
T ss_pred HHhhHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH
Confidence 44567777666554 569999999999999964233344 3567777788888899999999999999999999999876
Q ss_pred ccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccC
Q 000194 634 VLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEG 695 (1880)
Q Consensus 634 v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~ 695 (1880)
+..+..+ +...+.+ +...+|..+++.+.++....|++-+ +..+.--++.+..|+
T Consensus 890 ~~qyY~~----i~erIlD--tgvsVRKRvIKIlrdic~e~pdf~~--i~~~cakmlrRv~DE 943 (1692)
T KOG1020|consen 890 IFQYYDQ----IIERILD--TGVSVRKRVIKILRDICEETPDFSK--IVDMCAKMLRRVNDE 943 (1692)
T ss_pred HHHHHHH----HHhhcCC--CchhHHHHHHHHHHHHHHhCCChhh--HHHHHHHHHHHhccc
Confidence 6555443 3334433 4567889999999999998876521 234444445555554
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.048 Score=68.64 Aligned_cols=312 Identities=16% Similarity=0.172 Sum_probs=165.8
Q ss_pred chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh
Q 000194 104 NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN 183 (1880)
Q Consensus 104 ~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~ 183 (1880)
.+.+++..++-+.+++. ..|+-+++.|+-|+-|+... .+++++..+...-..|. +++.+.=.+++.++-++++.
T Consensus 136 s~EmardlapeVe~Ll~-~~~~~irKKA~Lca~r~irK----~P~l~e~f~~~~~~lL~-ek~hGVL~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 136 SPEMARDLAPEVERLLQ-HRDPYIRKKAALCAVRFIRK----VPDLVEHFVIAFRKLLC-EKHHGVLIAGLHLITELCKI 209 (866)
T ss_pred CHHHhHHhhHHHHHHHh-CCCHHHHHHHHHHHHHHHHc----CchHHHHhhHHHHHHHh-hcCCceeeeHHHHHHHHHhc
Confidence 34567777888888886 47899999999999999985 67777777777776664 34556678899999999998
Q ss_pred cCcc---chhchHHHHHHHHH-------------HhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhh
Q 000194 184 ASTV---FNVHVAEFVDAIWV-------------ALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDG 247 (1880)
Q Consensus 184 ~p~~---l~~~l~~i~~~i~~-------------~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~ 247 (1880)
.|+. |...+++++..+-+ ++.|| -++..... +++++.+.+. .-.+.+..++.++...
T Consensus 210 ~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dP--FLQi~iLr----lLriLGq~d~-daSd~M~DiLaqvatn 282 (866)
T KOG1062|consen 210 SPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDP--FLQIRILR----LLRILGQNDA-DASDLMNDILAQVATN 282 (866)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCch--HHHHHHHH----HHHHhcCCCc-cHHHHHHHHHHHHHhc
Confidence 7764 33333333332211 12233 33333333 3334443222 2334455555555443
Q ss_pred ccCCCChhHHHHHHHHHHHHHH-cchhhhHHHHHHHHHHH-HHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHH
Q 000194 248 LGRNAPVHSIHGSLLAVGELLR-NTGEFMMSRYREVAEIV-LRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICM 325 (1880)
Q Consensus 248 l~~~~~~~~~~~al~~l~~ll~-~~~~~~~~~~~~i~~~l-l~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~ 325 (1880)
-.++. .++=.+|-+.++ ...=...+-+..+.-.+ -+++.+++..+|..+++.+.++...++....+ + =
T Consensus 283 tdssk-----N~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqr-H----r 352 (866)
T KOG1062|consen 283 TDSSK-----NAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQR-H----R 352 (866)
T ss_pred ccccc-----cchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHH-H----H
Confidence 33221 111112222222 11101112222222222 23345677778888888888877777654322 2 2
Q ss_pred HHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 000194 326 NHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRG 403 (1880)
Q Consensus 326 ~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ 403 (1880)
..++.+|+.++ -|..|++-+-.+...- -+..+++.+.+.|.....+.......-+..+++.+.|+=.=|++.
T Consensus 353 ~tIleCL~DpD~SIkrralELs~~lvn~~------Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idt 426 (866)
T KOG1062|consen 353 STILECLKDPDVSIKRRALELSYALVNES------NVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDT 426 (866)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhccc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHH
Confidence 34567777664 3556666554443222 233444555555532221212233333344455444432225555
Q ss_pred HHHHHHhcC--CCHHHHH-HHHHHHHhCCCChHHHHHHHHHHHH
Q 000194 404 LLDIMFSAG--LSTTLVD-ALEQITVSIPSLLPTIQDRLLDCIS 444 (1880)
Q Consensus 404 ll~~l~~~~--ls~~l~~-~l~~i~~~~p~l~~~i~~~ll~~l~ 444 (1880)
.+.-+-..| ..++... -++-|+..++.+..+...++...++
T Consensus 427 ml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~ 470 (866)
T KOG1062|consen 427 MLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALS 470 (866)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHh
Confidence 444333344 4555554 4455566667777777777776665
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.33 Score=62.19 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=92.4
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhh---
Q 000194 198 AIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEF--- 274 (1880)
Q Consensus 198 ~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~--- 274 (1880)
.++.+..++++.+|.+|...+++... ...+...+.+.+.++.. +-..|++|+..|...++..|..
T Consensus 8 ~~L~~~ls~d~~vr~~AE~~l~qle~---------~~~f~~aL~~va~~~~~---sl~lRQ~A~v~L~~yie~hW~~~~E 75 (1005)
T KOG2274|consen 8 ELLSGSLSADQNVRSQAETQLKQLEL---------TEGFGVALAEVAANKDA---SLPLRQIALVLLKRYIEKHWSPNFE 75 (1005)
T ss_pred HHHHhhcCCChhHHHHHHHHHhcccc---------chHHHHHHHHHHhCccc---CchHHHHHHHHHHHHHHHhCCChHh
Confidence 34567789999999999998876421 11233344444443322 2456888888888888854411
Q ss_pred -------hHHHHHHH-HHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCC--cchHHHH
Q 000194 275 -------MMSRYREV-AEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAE--RDSGFIA 344 (1880)
Q Consensus 275 -------~~~~~~~i-~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~--r~~a~~a 344 (1880)
.......+ -+.++..+.+.+..+|.++..++..+|.++-. .-++++++.++..+...++ -..|+++
T Consensus 76 ~fr~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~P----d~WpElv~~i~~~l~~~n~n~i~~am~v 151 (1005)
T KOG2274|consen 76 AFRYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYP----DEWPELVPFILKLLSSGNENSIHGAMRV 151 (1005)
T ss_pred hccCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCc----hhhHHHHHHHHHHHhccchhhhhhHHHH
Confidence 11122222 23344445578889999999999999987643 2479999999999976433 3578888
Q ss_pred HHHHHhhchh
Q 000194 345 LGEMAGALDG 354 (1880)
Q Consensus 345 lg~la~~v~~ 354 (1880)
+..+...+-.
T Consensus 152 L~el~~ev~~ 161 (1005)
T KOG2274|consen 152 LAELSDEVDV 161 (1005)
T ss_pred HHHHHHHHHH
Confidence 8888766643
|
|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0093 Score=74.20 Aligned_cols=253 Identities=17% Similarity=0.223 Sum_probs=157.7
Q ss_pred HHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHh---CCCCCCCcchhhHHHHHHHhcCC-cchhHHHHHHHHHHHHHHHH
Q 000194 857 VAINSLMRILRDPSLASYHQKVVGSLMFIFKSM---GLGCVPYLPKVLPDLFHTVRTCD-DYLKDYITWKLGTLVSIVRQ 932 (1880)
Q Consensus 857 ~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~---~~~~~~~l~~iip~ll~~l~~~~-~~~~~~~~~~l~~lv~~~~~ 932 (1880)
.+-.+.++.|+|...-...-++++++..++..- ...+.||++.+.-.+...++... -+-|-.++..+++++..+++
T Consensus 526 l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e 605 (978)
T KOG1993|consen 526 LLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE 605 (978)
T ss_pred HHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 344567788888755455556777777777653 34578898887777777665432 13578889999999999999
Q ss_pred hHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchh-hHHHH
Q 000194 933 HIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYT-YVLDI 1011 (1880)
Q Consensus 933 ~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~-~~~~i 1011 (1880)
+|+||+..|+..+-..|..... + +-++..++.++..++.++|..-.++.|-++|.+--.. |.. +++.. ....-
T Consensus 606 ~I~P~~~~ivq~lp~LWe~s~~-e---~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~-D~~-sP~hv~L~EDg 679 (978)
T KOG1993|consen 606 HIAPYASTIVQYLPLLWEESEE-E---PLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELST-DPS-SPEHVYLLEDG 679 (978)
T ss_pred hhhHHHHHHHHHHHHHHhhhcc-C---cHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhc-CCC-CCceeehhhhH
Confidence 9999999999999999986542 1 1244578999999999999887776666777664433 322 22211 11122
Q ss_pred H---HHHHHHhcchhhhhhhhHHHHHHhhcCC-CcHHHHHHHHHHHHhhcccccccchhHhHHHHHHHhhCCCCHHHHHH
Q 000194 1012 L---HTLEVFGGTLDEHMHLLLPALIRLFKVD-APVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKD 1087 (1880)
Q Consensus 1012 l---~~l~~~g~~~~~~~~~ilp~l~~~l~~~-~~~~vr~~ai~~l~~l~~~~~~~~~~~~ii~~l~~~l~~~~~~l~~~ 1087 (1880)
+ .++......+.+-+-.++|-+...++.+ ....+-...+.+..-+-..+=+..|...|...+.+.+++-..+--.+
T Consensus 680 meLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~a 759 (978)
T KOG1993|consen 680 MELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQA 759 (978)
T ss_pred HHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 2 2222222345555556778887777654 11222222333333333333345688899988888887544444555
Q ss_pred HHHHHHHHHHH---hcc-ccccchhHHHHHHH
Q 000194 1088 AVDALCCLAHA---LGE-DFTIFIPSIHKLLL 1115 (1880)
Q Consensus 1088 al~~L~~l~~~---~g~-~f~~fip~i~~~l~ 1115 (1880)
.+.+++.+++. +|. -|.+-+|.+...+.
T Consensus 760 vLkiveili~t~~il~~~~~~~~L~~lf~~I~ 791 (978)
T KOG1993|consen 760 VLKIVEILIKTNPILGSLLFSPLLSRLFLSIA 791 (978)
T ss_pred HHHHHHHHHhhhHHHHhhhcchhhHHHHHHHH
Confidence 66666666553 232 23445555555553
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.032 Score=69.19 Aligned_cols=373 Identities=15% Similarity=0.156 Sum_probs=188.1
Q ss_pred hcchhHHHHHHHHHhHhHhhhCh--hhHHHHHHHHHHHHHHHhhcC----CCC--cchHHHHHHHHHhhchhhhhhhhhH
Q 000194 291 EHRDRLVRLSITSLLPRIAHFLR--DRFVTNYLKICMNHILTVLRI----PAE--RDSGFIALGEMAGALDGELFHYLPT 362 (1880)
Q Consensus 291 ~~~~~~Vr~~~~~~i~~la~~~~--~~f~~~yl~~~~~~Ll~~L~~----~~~--r~~a~~alg~la~~v~~~~~p~l~~ 362 (1880)
-.++.++++...--+.-+=..++ .-+ .=|-.+....++ |++ |+..++-+..+ .+ ...+++
T Consensus 67 ps~~~elKKLly~ywE~vPKt~~dgkl~------~EMILvcna~RkDLQHPNEyiRG~TLRFLckL----kE--~ELlep 134 (948)
T KOG1058|consen 67 PSRNHELKKLLYYYWELVPKTDSDGKLL------HEMILVCNAYRKDLQHPNEYIRGSTLRFLCKL----KE--PELLEP 134 (948)
T ss_pred ccCchHHHHHHHHHHHHccccCCCcccH------HHHHHHHHHHhhhccCchHhhcchhhhhhhhc----Cc--HHHhhh
Confidence 35667777765433332222222 111 113344444443 443 77666655443 22 245688
Q ss_pred HHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHH-HHHHHHHH---------------HH
Q 000194 363 ITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTT-LVDALEQI---------------TV 426 (1880)
Q Consensus 363 i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~-l~~~l~~i---------------~~ 426 (1880)
+|+.|+++|...+.-++..|+-|+..|-+. ++.+.|..++++...+....++. .+.|+-.+ ..
T Consensus 135 l~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~id 213 (948)
T KOG1058|consen 135 LMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNID 213 (948)
T ss_pred hHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHh
Confidence 889999999776666666788888887776 56777888888777665443332 12232222 23
Q ss_pred hCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcc-hhhHHH
Q 000194 427 SIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDL-LEFARD 505 (1880)
Q Consensus 427 ~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l-~~~v~~ 505 (1880)
.+|.+.+.++--+.+.|..+-. ..... ..|+ .
T Consensus 214 qi~~~~~~LqlViVE~Irkv~~----------------------------------------------~~p~~~~~~i-~ 246 (948)
T KOG1058|consen 214 QIPSFNDSLQLVIVELIRKVCL----------------------------------------------ANPAEKARYI-R 246 (948)
T ss_pred hccCccHHHHHHHHHHHHHHHh----------------------------------------------cCHHHhhHHH-H
Confidence 3333333333222222221100 00000 0122 2
Q ss_pred HHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000194 506 SVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSL 585 (1880)
Q Consensus 506 ~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1880)
++..++...++.|+-.||.++..+.. ..+.+......++..+..++|-++..-++.-|
T Consensus 247 ~i~~lL~stssaV~fEaa~tlv~lS~----------------------~p~alk~Aa~~~i~l~~kesdnnvklIvldrl 304 (948)
T KOG1058|consen 247 CIYNLLSSTSSAVIFEAAGTLVTLSN----------------------DPTALKAAASTYIDLLVKESDNNVKLIVLDRL 304 (948)
T ss_pred HHHHHHhcCCchhhhhhcceEEEccC----------------------CHHHHHHHHHHHHHHHHhccCcchhhhhHHHH
Confidence 44555665666776666554433211 11223333334455556666666665555544
Q ss_pred cCCCCcc-hhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCC-cccccHHHHHHHHHHHHHHhcCCCChHhHHHHH
Q 000194 586 YGNRGFD-DFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKN-PAYVLPALRRHLIQLLTYLEQSSADNKCREESA 663 (1880)
Q Consensus 586 ~~~~~fd-~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~-p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~ 663 (1880)
.+-..-+ ..+ .+++--++..++-++.+||..++.+.=.|+... -..+...|.+-+...-.. ++. ...+-|..-.
T Consensus 305 ~~l~~~~~~il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d-~~~~yRqlLi 380 (948)
T KOG1058|consen 305 SELKALHEKIL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESD-DNGKYRQLLI 380 (948)
T ss_pred HHHhhhhHHHH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccc-cchHHHHHHH
Confidence 2100000 000 123333445678889999999999877776644 222333333322221111 111 1122243333
Q ss_pred HHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCc
Q 000194 664 KLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAA 743 (1880)
Q Consensus 664 ~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~ 743 (1880)
+.+. .+.-.+..+...+++.++..+.|. ++.....++.-+.+..+..+.. -..++..++..+..-.+
T Consensus 381 ktih----~cav~Fp~~aatvV~~ll~fisD~-----N~~aas~vl~FvrE~iek~p~L----r~~ii~~l~~~~~~irS 447 (948)
T KOG1058|consen 381 KTIH----ACAVKFPEVAATVVSLLLDFISDS-----NEAAASDVLMFVREAIEKFPNL----RASIIEKLLETFPQIRS 447 (948)
T ss_pred HHHH----HHhhcChHHHHHHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHhCchH----HHHHHHHHHHhhhhhcc
Confidence 4443 344445567889999999999985 4444555555555555443321 12334444444433334
Q ss_pred hhhHHHHHHHHHHHHhhcC
Q 000194 744 VTKREVAVSTLGQVVQSTG 762 (1880)
Q Consensus 744 ~~~r~~Al~~Lg~l~~~~~ 762 (1880)
......|+|.+|..|+..+
T Consensus 448 ~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 448 SKICRGALWILGEYCEGLS 466 (948)
T ss_pred cccchhHHHHHHHHHhhhH
Confidence 4566789999998776543
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0044 Score=73.46 Aligned_cols=201 Identities=15% Similarity=0.124 Sum_probs=139.5
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHh-hcc-cc
Q 000194 24 DALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDEL-IDV-AL 101 (1880)
Q Consensus 24 ~~~~~l~~~l~s~~~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~L-i~~-~~ 101 (1880)
+.+...+.+|..++...|.++ |..++.........+++......|...+...++.....++.-|..++.-| +.+ .+
T Consensus 43 ~~L~~~Id~l~eK~~~~Re~a--L~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 43 DKLKEAIDLLTEKSSSTREAA--LEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHHHHHHhcCHHHHHHH--HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC
Confidence 346677888876654333333 77777777788888888888888999888888876667777777666666 332 11
Q ss_pred CcchhHHHHHHHHHHhhcccCC-ChHHHHHHHHHHHHHhhhCCCCchhHHH--HHHHHHH--hhhcCCC---------cc
Q 000194 102 GENASKVSKFSNYMRTVFEVKR-DREILVLASKVLGHLARAGGAMTADEVE--FQVKMAL--DWLRGDR---------VE 167 (1880)
Q Consensus 102 ~~~~~~~~~~~~~L~~~l~~~~-d~~v~~~aa~~l~~L~~~~g~~~~~~v~--~~~~~~~--~~l~~~~---------~~ 167 (1880)
.+.......+.+.|..++.... ...++..++.|||-++..++.-..+... ..++.++ .+++.++ +.
T Consensus 121 ~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 121 EDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred ccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCcc
Confidence 2345566778888888886322 3456667777998877765543322211 2333221 1222222 24
Q ss_pred hhHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Q 000194 168 YRRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIE 226 (1880)
Q Consensus 168 ~~R~aA~~~l~~la~~~p~-~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~ 226 (1880)
...-||+..|+-|+..+|. .+..++...+|.+...|..++..||-||.+++.-+.+...
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 5788999999999999887 4667788899999999999999999999999998877654
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.34 Score=60.43 Aligned_cols=347 Identities=16% Similarity=0.234 Sum_probs=174.8
Q ss_pred hhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHh
Q 000194 274 FMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAG 350 (1880)
Q Consensus 274 ~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~ 350 (1880)
|+.|.+. ++...|+.++++..+.||+.++.++-.+.---|+ .+.+++|-|..-|..++ ..++|...+.++|.
T Consensus 136 fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe-----Alr~~FprL~EkLeDpDp~V~SAAV~VICELAr 210 (877)
T KOG1059|consen 136 IVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE-----ALRPCFPRLVEKLEDPDPSVVSAAVSVICELAR 210 (877)
T ss_pred ccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH-----hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHh
Confidence 4555444 5777888999999999999888777655422222 46778888888888765 45789999999998
Q ss_pred hchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHH-HHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 000194 351 ALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVR-GLLDIMFSAGLSTTLVDALEQITVSIP 429 (1880)
Q Consensus 351 ~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~-~ll~~l~~~~ls~~l~~~l~~i~~~~p 429 (1880)
.-++...++-|.+...+...-.++ .-...+..||.|+- +.|-+. .+++++.+- .+...+
T Consensus 211 KnPknyL~LAP~ffkllttSsNNW---mLIKiiKLF~aLtp-----lEPRLgKKLieplt~l------i~sT~A------ 270 (877)
T KOG1059|consen 211 KNPQNYLQLAPLFYKLLVTSSNNW---VLIKLLKLFAALTP-----LEPRLGKKLIEPITEL------MESTVA------ 270 (877)
T ss_pred hCCcccccccHHHHHHHhccCCCe---ehHHHHHHHhhccc-----cCchhhhhhhhHHHHH------HHhhHH------
Confidence 888765555555554443211111 11234444444322 223222 233333210 111110
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhh
Q 000194 430 SLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVL 509 (1880)
Q Consensus 430 ~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~ 509 (1880)
..-+.+.|-.|+++ .+..++ .+..+.+.+|.+-|+.|
T Consensus 271 ------mSLlYECvNTVVa~-s~s~g~-------------------~d~~asiqLCvqKLr~f----------------- 307 (877)
T KOG1059|consen 271 ------MSLLYECVNTVVAV-SMSSGM-------------------SDHSASIQLCVQKLRIF----------------- 307 (877)
T ss_pred ------HHHHHHHHHHheee-hhccCC-------------------CCcHHHHHHHHHHHhhh-----------------
Confidence 01122333333333 111000 01233556666655544
Q ss_pred hccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCC
Q 000194 510 YLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNR 589 (1880)
Q Consensus 510 ~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~ 589 (1880)
+++.++..+--+..++.+++...+. +.+.-.+ ++-.++.|.|+.||..++.-+.+--
T Consensus 308 -iedsDqNLKYlgLlam~KI~ktHp~------------------~Vqa~kd----lIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 308 -IEDSDQNLKYLGLLAMSKILKTHPK------------------AVQAHKD----LILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred -hhcCCccHHHHHHHHHHHHhhhCHH------------------HHHHhHH----HHHHHhccCCchhHHHHHHHHHHHh
Confidence 5556677776667777776643321 1122222 3334678999999999988773100
Q ss_pred CcchhhccHhhHHHHHHHhCCCCH-hHHH-HHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHH
Q 000194 590 GFDDFLAQADCLSAIFAALNDEDF-DVRE-YAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLG 667 (1880)
Q Consensus 590 ~fd~~L~~~~~l~~L~~~l~D~~~-~VR~-~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~ 667 (1880)
.=+ .-.++++.|+..+.+.+. ..|. ....+++-.+..+-.+|..+ . ..+..+.+|..- +..+.-..-+.-+-
T Consensus 365 skk---Nl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdF-E-WYlsVlveLa~l-~~~~~G~~I~eQi~ 438 (877)
T KOG1059|consen 365 SKK---NLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDF-E-WYLSVLVELARL-EGTRHGSLIAEQII 438 (877)
T ss_pred hhh---hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhH-H-HHHHHHHHHHhc-cccchhhHHHHHHH
Confidence 000 013567777665544433 4443 34445555555554444321 1 122233333222 11111112222333
Q ss_pred HHHHhCcccccCchHHHHHHHHH--HhccCCCC-CCChhHHHHHHHHHHHHHHh
Q 000194 668 CLIRNCERLIRPYIAPIHKALVA--RLLEGTGI-NANNGIISGVLVTVGDLARV 718 (1880)
Q Consensus 668 ~l~~~~~~~~~py~~~il~~ll~--~l~~~~~~-~~~~~v~~~~~~~l~~La~~ 718 (1880)
+++-.. +.++||.-..+..++. .+...... .....|..+++.++|+.+..
T Consensus 439 Dv~iRV-~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ 491 (877)
T KOG1059|consen 439 DVAIRV-PSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEF 491 (877)
T ss_pred HHheec-hhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHH
Confidence 333332 3567776666665554 11111100 12455677777888877764
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.19 Score=62.29 Aligned_cols=362 Identities=16% Similarity=0.169 Sum_probs=194.3
Q ss_pred HHHHHHHHHcCCC--C-chhhHHHHHHHHHHHHH--hhhChHHHHHHHHHHH-----------HH--HHhhhcCCChhhh
Q 000194 25 ALNRILADLCTHG--N-PKEGASLALRKHIEEQA--RDLGGEAFSRFMDQLY-----------DR--ISGLLESNDAAEN 86 (1880)
Q Consensus 25 ~~~~l~~~l~s~~--~-~~~~aa~~l~~~v~~~~--~~~~~~~~~~~~~~l~-----------~~--i~~l~~s~~~~~r 86 (1880)
-+.-++.++++.. + ++.+.-.||..+=.-.= +-+++-+=.+|.-.+. .. -.+|++|+...+|
T Consensus 12 GL~vFISDlRncq~keaE~kRInkELanIRskFk~~K~L~gYqkKKYV~KLlyI~llg~dIdFGhmEaV~LLss~kysEK 91 (938)
T KOG1077|consen 12 GLAVFISDLRNCQSKEAEEKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLYIYLLGYDIDFGHMEAVNLLSSNKYSEK 91 (938)
T ss_pred hHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHhcCccccchHHHHHHhhcCCccHH
Confidence 3667788887654 2 32346666666542221 1234433445543321 11 1267888999999
Q ss_pred hhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc-CCC
Q 000194 87 LGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-GDR 165 (1880)
Q Consensus 87 ~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~-~~~ 165 (1880)
.-|-+.+..|+.-. ...++-..+-+++=+. +.|+.-+-.|-.++|.+ ||-...+-+...++.+ |. ++.
T Consensus 92 qIGYl~is~L~n~n----~dl~klvin~iknDL~-srn~~fv~LAL~~I~ni---G~re~~ea~~~DI~Kl---LvS~~~ 160 (938)
T KOG1077|consen 92 QIGYLFISLLLNEN----SDLMKLVINSIKNDLS-SRNPTFVCLALHCIANI---GSREMAEAFADDIPKL---LVSGSS 160 (938)
T ss_pred HHhHHHHHHHHhcc----hHHHHHHHHHHHhhhh-cCCcHHHHHHHHHHHhh---ccHhHHHHhhhhhHHH---HhCCcc
Confidence 99999999998553 2223333455666664 45677777777777653 3333333333344433 33 334
Q ss_pred cchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhh-------------
Q 000194 166 VEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRW------------- 232 (1880)
Q Consensus 166 ~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~------------- 232 (1880)
..-.|..|.++|-.|-...|+.+.+ ....+.|+..|.|.+..|--||..-+..+.. +.+..
T Consensus 161 ~~~vkqkaALclL~L~r~spDl~~~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk----~~p~~yk~~~~~avs~L~ 234 (938)
T KOG1077|consen 161 MDYVKQKAALCLLRLFRKSPDLVNP--GEWAQRIVHLLDDQHMGVVTAATSLIEALVK----KNPESYKTCLPLAVSRLS 234 (938)
T ss_pred hHHHHHHHHHHHHHHHhcCccccCh--hhHHHHHHHHhCccccceeeehHHHHHHHHH----cCCHHHhhhHHHHHHHHH
Confidence 4455665556666677778887654 3556667778888887776655543333221 21111
Q ss_pred ------------------HHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh---------------------
Q 000194 233 ------------------RVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE--------------------- 273 (1880)
Q Consensus 233 ------------------~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~--------------------- 273 (1880)
-..|+..=+-.+++.+..+.|.-++..-..+++.++....+
T Consensus 235 riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI 314 (938)
T KOG1077|consen 235 RIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAI 314 (938)
T ss_pred HHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHH
Confidence 11233221112222222221222233333344444432210
Q ss_pred -------hhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCC---cchHHH
Q 000194 274 -------FMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAE---RDSGFI 343 (1880)
Q Consensus 274 -------~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~---r~~a~~ 343 (1880)
--.+-+..-|..+..++.+++..+|..+++.+-.+|... |....+..-...++..|+.+++ |..|++
T Consensus 315 ~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~---~s~davK~h~d~Ii~sLkterDvSirrravD 391 (938)
T KOG1077|consen 315 SLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSE---FSIDAVKKHQDTIINSLKTERDVSIRRRAVD 391 (938)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhcc---chHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 001123334555666677888888888887777777542 2221222223444455554433 556666
Q ss_pred HHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Q 000194 344 ALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAG 412 (1880)
Q Consensus 344 alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ 412 (1880)
.|=.++..- -...|+..+.++|.......+++...=++.|++.+..+..=|+..+++.+--.|
T Consensus 392 LLY~mcD~~------Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriag 454 (938)
T KOG1077|consen 392 LLYAMCDVS------NAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAG 454 (938)
T ss_pred HHHHHhchh------hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc
Confidence 555544221 234566666677755544445566666777888888888888888888766554
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0014 Score=73.06 Aligned_cols=353 Identities=12% Similarity=0.096 Sum_probs=187.2
Q ss_pred HHHHHHHHHcCCCCc-hhhHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHhhhcCCCh-hhhhhHHHHHhHhhcccc
Q 000194 25 ALNRILADLCTHGNP-KEGASLALRKHIEEQARDLGGEAFSRFMD-QLYDRISGLLESNDA-AENLGALRAIDELIDVAL 101 (1880)
Q Consensus 25 ~~~~l~~~l~s~~~~-~~~aa~~l~~~v~~~~~~~~~~~~~~~~~-~l~~~i~~l~~s~~~-~~r~~~i~ai~~Li~~~~ 101 (1880)
.+.++.++|.|..-+ .-.|..+.+.++ .+|-++- ....++ -.+.++.+++.+... --+.-|.-|+..+.++..
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~L---S~E~~PP-Iq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLL---SKETSPP-IQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHh---ccccCCC-chhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcc
Confidence 467888888886422 224655555554 5555543 222221 134556666643222 134456666666654432
Q ss_pred CcchhHH---HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH--HHHHHHhhhcCCCc-chhHHHHHH
Q 000194 102 GENASKV---SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF--QVKMALDWLRGDRV-EYRRFAAVL 175 (1880)
Q Consensus 102 ~~~~~~~---~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~--~~~~~~~~l~~~~~-~~~R~aA~~ 175 (1880)
. .+++ ....+.+-+++. +.+.+|++.|.|+||.+|..+.. --|+|-. .++.++..+.+.+. -.--.-|..
T Consensus 148 ~--QTkvVvd~~AVPlfiqlL~-s~~~~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~TW 223 (526)
T COG5064 148 Q--QTKVVVDAGAVPLFIQLLS-STEDDVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNATW 223 (526)
T ss_pred c--ceEEEEeCCchHHHHHHHc-CchHHHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhHH
Confidence 1 1111 011223333442 55789999999999999864221 1222221 34555666554333 122234567
Q ss_pred HHHHHHhh-cCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHH--HHHHHHHHhhccCCC
Q 000194 176 ILKEMAEN-ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY--YRMFEATQDGLGRNA 252 (1880)
Q Consensus 176 ~l~~la~~-~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~--~~~l~~~~~~l~~~~ 252 (1880)
.|+-|+.+ -|.---..+.+.+|.+.+.+...+++|-..|+.|+.-+.+. +....+.+ ..+-..+...|..++
T Consensus 224 tLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg-----~~E~i~avld~g~~~RLvElLs~~s 298 (526)
T COG5064 224 TLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG-----PNEKIQAVLDVGIPGRLVELLSHES 298 (526)
T ss_pred HHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC-----cHHHHHHHHhcCCcHHHHHHhcCcc
Confidence 88888877 33333456778888888888888888888999998865432 11111111 011122333333332
Q ss_pred ChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHH
Q 000194 253 PVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILT 330 (1880)
Q Consensus 253 ~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~ 330 (1880)
..++.-++..+|.++.+...--.--+. ..+..+...++++...+|+.+|++|..+.+-..++. ...+ ..+.|.|..
T Consensus 299 -a~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqi-qavid~nliPpLi~ 376 (526)
T COG5064 299 -AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQI-QAVIDANLIPPLIH 376 (526)
T ss_pred -ccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHH-HHHHhcccchHHHH
Confidence 334455555666555433210000000 012233344577778999999999999877665543 2122 356666666
Q ss_pred hhcCC--CCcchHHHHHHHHHhhc-hh-hhhhhh--hHHHHHHHHhhcCCCCCCCchHHHHHHHHHHH
Q 000194 331 VLRIP--AERDSGFIALGEMAGAL-DG-ELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1880)
Q Consensus 331 ~L~~~--~~r~~a~~alg~la~~v-~~-~~~p~l--~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~ 392 (1880)
.|... +.|..|+-|+.+..... +. ++..|+ ...+..+...|.-...+..+-++.|+..+.+.
T Consensus 377 lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~ 444 (526)
T COG5064 377 LLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKV 444 (526)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhh
Confidence 66543 34567888887753221 11 334444 23455555555333333444567888777653
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.31 Score=58.80 Aligned_cols=243 Identities=15% Similarity=0.183 Sum_probs=127.0
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhhh
Q 000194 280 REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHY 359 (1880)
Q Consensus 280 ~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la~~v~~~~~p~ 359 (1880)
+..+..+-.++.+.....|-+++.++.++|--.|+... .+=+.+ ..|-+...|..+.-||..+... |. ..-
T Consensus 302 ~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~-----vcN~ev-EsLIsd~Nr~IstyAITtLLKT-Gt--~e~ 372 (898)
T COG5240 302 DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS-----VCNKEV-ESLISDENRTISTYAITTLLKT-GT--EET 372 (898)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee-----ecChhH-HHHhhcccccchHHHHHHHHHc-Cc--hhh
Confidence 33444444455566666677777777777654443210 001111 1111334566677777665432 22 123
Q ss_pred hhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHhCCCChHHHH
Q 000194 360 LPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSA-G--LSTTLVDALEQITVSIPSLLPTIQ 436 (1880)
Q Consensus 360 l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~-~--ls~~l~~~l~~i~~~~p~l~~~i~ 436 (1880)
++.+|..|-....+-..+-..-+++++..++-.+......|+.-+...|.+- | ...++.+++.++.+..|..+
T Consensus 373 idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~sk---- 448 (898)
T COG5240 373 IDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSK---- 448 (898)
T ss_pred HHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHH----
Confidence 4444444444443333333345677777777777766555666555555554 3 35567778888777777543
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCC---CcchhhHHHHHhhhccC
Q 000194 437 DRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKG---HDLLEFARDSVVLYLDD 513 (1880)
Q Consensus 437 ~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~---~~l~~~v~~~~~~~l~~ 513 (1880)
++.|+.++.-+....| -..+++.|+-+.-+| ..-.-|++.+....+-
T Consensus 449 EraLe~LC~fIEDcey-----------------------------~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iL- 498 (898)
T COG5240 449 ERALEVLCTFIEDCEY-----------------------------HQITVRILGILGREGPRAKTPGKYVRHIYNRLIL- 498 (898)
T ss_pred HHHHHHHHHHHhhcch-----------------------------hHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHH-
Confidence 4444444422111111 123444444332111 1222467766554432
Q ss_pred CChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000194 514 EDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSL 585 (1880)
Q Consensus 514 ~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1880)
++.-||.+|+.++.++..+.-. ..+.+-+..++..+..|.|.+||-.+--++
T Consensus 499 EN~ivRsaAv~aLskf~ln~~d--------------------~~~~~sv~~~lkRclnD~DdeVRdrAsf~l 550 (898)
T COG5240 499 ENNIVRSAAVQALSKFALNISD--------------------VVSPQSVENALKRCLNDQDDEVRDRASFLL 550 (898)
T ss_pred hhhHHHHHHHHHHHHhccCccc--------------------cccHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 2677999888888776533211 123344455666777888888887765444
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.62 E-value=4.2e-05 Score=65.14 Aligned_cols=54 Identities=28% Similarity=0.255 Sum_probs=50.8
Q ss_pred chhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 000194 167 EYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRA 220 (1880)
Q Consensus 167 ~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~ 220 (1880)
|..|.+|+.+|+.+++..+..+.++++++++.+...|.|+++.||.+|+.||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 357999999999999999999999999999999999999999999999999975
|
... |
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.35 Score=64.75 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=54.8
Q ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcC
Q 000194 1362 SWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMG 1441 (1880)
Q Consensus 1362 ~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~ 1441 (1880)
.-+-+.|+|++|+..|++.+...+++ .....+-.|+.++|+|+.....+...... +++.. ......+.+...+|
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~p~~----~~~~n~a~~~~~l~~~~~Ai~~~~~al~l-~p~~~-~a~~~~a~a~~~lg 208 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECKPDP----VYYSNRAACHNALGDWEKVVEDTTAALEL-DPDYS-KALNRRANAYDGLG 208 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHhCCHHHHHHHHHHHHHc-CCCCH-HHHHHHHHHHHHcC
Confidence 34778899999999999988754442 34567788999999998777766553321 22211 12223467888899
Q ss_pred ChhhHHH
Q 000194 1442 EWDQMAE 1448 (1880)
Q Consensus 1442 ~Wd~~~~ 1448 (1880)
+|+.-..
T Consensus 209 ~~~eA~~ 215 (615)
T TIGR00990 209 KYADALL 215 (615)
T ss_pred CHHHHHH
Confidence 9987544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.56 Score=62.72 Aligned_cols=136 Identities=16% Similarity=0.158 Sum_probs=100.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.....|+.++.+....|+++.|...+.++...+|. .+.+.+..+.+.+..|+ ..+|+..+++.+...
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE----------DPDIYYHRAQLHFIKGE---FAQAGKDYQKSIDLD 429 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcC
Confidence 45789999999999999999999999998877542 47788889999999995 678999998866421
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
.. ....+..+|.-.... ...++.+..|..+++..|+...+|..+|......
T Consensus 430 P~----------------------~~~~~~~la~~~~~~------g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~- 480 (615)
T TIGR00990 430 PD----------------------FIFSHIQLGVTQYKE------GSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQ- 480 (615)
T ss_pred cc----------------------CHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-
Confidence 10 011233333333322 3467889999999999999999998888764431
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhcc
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAA 1757 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~ 1757 (1880)
.-...|++.|-+++.+.+
T Consensus 481 -------------g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 481 -------------NKFDEAIEKFDTAIELEK 498 (615)
T ss_pred -------------cCHHHHHHHHHHHHhcCC
Confidence 123579999999998853
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0013 Score=74.03 Aligned_cols=407 Identities=19% Similarity=0.175 Sum_probs=205.8
Q ss_pred HHHHHHHHHhhhcCCccccc--HHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhc
Q 000194 616 REYAISVAGRLSEKNPAYVL--PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLL 693 (1880)
Q Consensus 616 R~~a~~~l~~l~~~~p~~v~--p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~ 693 (1880)
|+++...++++-..+.-.+. ..+| .++.+.+++....+|+ |+-.+..+.++.-. ..-....+.++-.+.
T Consensus 25 rEav~~ll~~lEd~~~i~fyS~~plr-----altvL~ySDnlnlqrs-aalafAeitek~vr---~Vsres~epvl~llq 95 (550)
T KOG4224|consen 25 REAVADLLNRLEDRNAISFYSASPLR-----ALTVLKYSDNLNLQRS-AALAFAEITEKGVR---RVSRESNEPVLALLQ 95 (550)
T ss_pred HHHHHHHHHhhcccccccccCCCccc-----hheeeeeccccccchH-HHHHHHHHHHHHHH---HhhhhhhhHHHHHHh
Confidence 55666677776665432222 1133 2445566633334443 34455555543211 111122223333344
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHhcCC-chhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcch
Q 000194 694 EGTGINANNGIISGVLVTVGDLARVGGF-GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYP 772 (1880)
Q Consensus 694 ~~~~~~~~~~v~~~~~~~l~~La~~~g~-~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p 772 (1880)
.. ++.+..++..++|.++..++. .+.--+..+=+.+.+++.|. .+++.+|++++..++.........- . .
T Consensus 96 s~-----d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~--vevqcnaVgCitnLaT~d~nk~kiA-~-s 166 (550)
T KOG4224|consen 96 SC-----DKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG--VEVQCNAVGCITNLATFDSNKVKIA-R-S 166 (550)
T ss_pred Cc-----chhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC--cEEEeeehhhhhhhhccccchhhhh-h-c
Confidence 32 566777778888988876654 33444556677888888875 4788899999998887644332111 0 1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcc
Q 000194 773 QLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSED 852 (1880)
Q Consensus 773 ~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 852 (1880)
.-+..+.+ |.+.++..+++.+.-++-.+. -.. ++ .. . +.
T Consensus 167 GaL~pltr-LakskdirvqrnatgaLlnmT---hs~--En------Rr----~-----------------LV-------- 205 (550)
T KOG4224|consen 167 GALEPLTR-LAKSKDIRVQRNATGALLNMT---HSR--EN------RR----V-----------------LV-------- 205 (550)
T ss_pred cchhhhHh-hcccchhhHHHHHHHHHHHhh---hhh--hh------hh----h-----------------hh--------
Confidence 22344444 333445667776543332221 100 00 00 0 00
Q ss_pred cchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHh--CCCCCCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHH
Q 000194 853 YYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSM--GLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV 930 (1880)
Q Consensus 853 ~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~--~~~~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~ 930 (1880)
..-.++.|+..++...+. .+..++.|+..|.-.- .....+-=|+++|.+++.+++.++..+..+..+|+.+..-.
T Consensus 206 --~aG~lpvLVsll~s~d~d-vqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt 282 (550)
T KOG4224|consen 206 --HAGGLPVLVSLLKSGDLD-VQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT 282 (550)
T ss_pred --ccCCchhhhhhhccCChh-HHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc
Confidence 000112233334332222 2234555665554321 11234445689999999999988887776665666554321
Q ss_pred HHhHHHh-----HHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCch
Q 000194 931 RQHIRKY-----LQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDY 1005 (1880)
Q Consensus 931 ~~~i~~y-----~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~ 1005 (1880)
.+.++. +|-++.++ +.+..| +...-+.||..++..=..+.---=.-++.++.+.|.-.| ..
T Consensus 283 -~Yq~eiv~ag~lP~lv~Ll----qs~~~p------lilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~d---nE 348 (550)
T KOG4224|consen 283 -EYQREIVEAGSLPLLVELL----QSPMGP------LILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGD---NE 348 (550)
T ss_pred -hhhhHHHhcCCchHHHHHH----hCcchh------HHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCC---ch
Confidence 122221 23333333 222211 111223344333322221111111123445566664322 12
Q ss_pred hhHHHHHHHHHHHhcchhhhhhh-----hHHHHHHhhcCCCcHHHHHHHHHHHHhhcccccccchh--HhHHHHHHHhhC
Q 000194 1006 TYVLDILHTLEVFGGTLDEHMHL-----LLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHI--SSLVHHLKLVLD 1078 (1880)
Q Consensus 1006 ~~~~~il~~l~~~g~~~~~~~~~-----ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~~~~~~~~--~~ii~~l~~~l~ 1078 (1880)
+..+.+.+++-.+..+-+.-... -+|-+..++.. .|.+++...-.++..++..-+.+.++ +.|++.|+....
T Consensus 349 eiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD-~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~ 427 (550)
T KOG4224|consen 349 EIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLD-GPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTG 427 (550)
T ss_pred hhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhc-CChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccC
Confidence 24444555554443322222222 24555444433 47888888888898888775555533 367788888888
Q ss_pred CCCHHHHHHHHHHHHHHHHHh
Q 000194 1079 GKNDELRKDAVDALCCLAHAL 1099 (1880)
Q Consensus 1079 ~~~~~l~~~al~~L~~l~~~~ 1099 (1880)
+.+.+++..+-.+|..+....
T Consensus 428 s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 428 SESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred ccchhhcccHHHHHHhhhhhh
Confidence 888999999999998887553
|
|
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.043 Score=69.65 Aligned_cols=159 Identities=19% Similarity=0.236 Sum_probs=109.7
Q ss_pred cccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHH
Q 000194 633 YVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTV 712 (1880)
Q Consensus 633 ~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l 712 (1880)
.++..+-..|.+.+...+.++.....-+..+..+-.+++..+..-.+.++..++.+-..=-. ..++.+..++...+
T Consensus 458 ~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S----~~n~ql~~Tss~~i 533 (982)
T KOG2022|consen 458 GLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLS----APNPQLLSTSSDLI 533 (982)
T ss_pred HHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccc----cCChhHHHHHHHHH
Confidence 44455555566666555434223344455667788889888877777766666554332111 13677888889999
Q ss_pred HHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCC-CCHHHH
Q 000194 713 GDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGE-LVWSTR 791 (1880)
Q Consensus 713 ~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~-~~~~vr 791 (1880)
|.++...++. .-|+...+|++++.+..+ +.-..|+.+|.++|+.+...+.||.+ .++..+-..+... .....|
T Consensus 534 gs~s~~l~e~-P~~ln~sl~~L~~~Lh~s---k~s~q~i~tl~tlC~~C~~~L~py~d--~~~a~~~e~l~~~~~~~S~~ 607 (982)
T KOG2022|consen 534 GSLSNWLGEH-PMYLNPSLPLLFQGLHNS---KESEQAISTLKTLCETCPESLDPYAD--QFSAVCYEVLNKSNAKDSDR 607 (982)
T ss_pred HHHHHHHhcC-CcccCchHHHHHHHhcCc---hHHHHHHHHHHHHHHhhhhhCchHHH--HHHHHHHHHhcccccCchHH
Confidence 9998876653 236677788888888633 34567888899999999999999986 6888888777432 255788
Q ss_pred HHHHHHHHHH
Q 000194 792 REVLKVLGIM 801 (1880)
Q Consensus 792 ~~~l~~lg~l 801 (1880)
...++.+|.+
T Consensus 608 ~klm~sIGyv 617 (982)
T KOG2022|consen 608 LKLMKSIGYV 617 (982)
T ss_pred HHHHHHHHHH
Confidence 8888988875
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.011 Score=77.04 Aligned_cols=293 Identities=15% Similarity=0.106 Sum_probs=170.1
Q ss_pred HHhhhcC-CChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCC----Cchh
Q 000194 74 ISGLLES-NDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGA----MTAD 148 (1880)
Q Consensus 74 i~~l~~s-~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~----~~~~ 148 (1880)
+...+++ ...+.|.+|+..+..|-..- ....++.|..+|+..++. +.+.+|+..|.+++-++...-.. ..--
T Consensus 427 lts~IR~lk~~~tK~~ALeLl~~lS~~i--~de~~LDRVlPY~v~l~~-Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dani 503 (1431)
T KOG1240|consen 427 LTSCIRALKTIQTKLAALELLQELSTYI--DDEVKLDRVLPYFVHLLM-DSEADVRATALETLTELLALVRDIPPSDANI 503 (1431)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHhhhc--chHHHHhhhHHHHHHHhc-CchHHHHHHHHHHHHHHHhhccCCCcccchh
Confidence 3344444 45667888888887775442 345678899999999996 67889999999999988664221 1222
Q ss_pred HHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHH-HHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q 000194 149 EVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDA-IWVALRDPTLAVRERAVEALRACLRVIEK 227 (1880)
Q Consensus 149 ~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~-i~~~l~D~~~~VR~aA~~al~~~~~~i~~ 227 (1880)
|++.+++.+-..+.+......|.|=.-.|..||..+-..+. .-... ....+.||+..- +.+.
T Consensus 504 F~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle----~~q~~~~~g~~n~~nset---~~~~---------- 566 (1431)
T KOG1240|consen 504 FPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLE----LTQELRQAGMLNDPNSET---APEQ---------- 566 (1431)
T ss_pred hHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHH----HHHHHHhcccccCccccc---cccc----------
Confidence 66667776666555546667888877778888876544321 11111 112245665530 1100
Q ss_pred hchhhHHHHHHHHHHHHHhh-ccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH-HHHHHHHHhhcchhHHHHHHHHHh
Q 000194 228 RETRWRVQWYYRMFEATQDG-LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE-VAEIVLRYLEHRDRLVRLSITSLL 305 (1880)
Q Consensus 228 r~~~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~-i~~~ll~~~~~~~~~Vr~~~~~~i 305 (1880)
.........+ ...++.... +.++ +.-++.+=+..+..|.. =|...+-.+ ++.-++.++++++...|.+-.+.|
T Consensus 567 ~~~~~~~~L~-~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~---FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI 641 (1431)
T KOG1240|consen 567 NYNTELQALH-HTVEQMVSSLLSDS-PPIVKRALLESIIPLCV---FFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSI 641 (1431)
T ss_pred ccchHHHHHH-HHHHHHHHHHHcCC-chHHHHHHHHHHHHHHH---HhhhcccccchHHHHHHHhcCccHHHHHHHHhhc
Confidence 0001111112 222222222 3444 24556664444444432 122222222 445567788999999999999999
Q ss_pred HhHhhhChhhHHHHHHHHHHHHHHHhhcCCCC--cchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHH
Q 000194 306 PRIAHFLRDRFVTNYLKICMNHILTVLRIPAE--RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEAL 383 (1880)
Q Consensus 306 ~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~--r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~ 383 (1880)
+-++.+-+..-++.| ++|+|...|.+.++ -..|+.|+.-+.+. |---++++-+|++.+...|-.++.=.+..++
T Consensus 642 ~gvsi~VG~rs~sey---llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~ 717 (1431)
T KOG1240|consen 642 VGVSIFVGWRSVSEY---LLPLLQQGLTDGEEAVIVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVL 717 (1431)
T ss_pred cceEEEEeeeeHHHH---HHHHHHHhccCcchhhHHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHH
Confidence 999888776645555 67888888876554 24566666665432 2111366666666666555433222234677
Q ss_pred HHHHHHHHHhCC
Q 000194 384 ACVGNIARAMGP 395 (1880)
Q Consensus 384 ~~l~~la~~~g~ 395 (1880)
..+..+++.++.
T Consensus 718 ~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 718 GIIAAIARQLSA 729 (1431)
T ss_pred HHHHHHHhhhhh
Confidence 777777776664
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.087 Score=64.73 Aligned_cols=270 Identities=16% Similarity=0.076 Sum_probs=155.6
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH--hhhchh
Q 000194 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVI--EKRETR 231 (1880)
Q Consensus 154 ~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i--~~r~~~ 231 (1880)
+-+.+-++-.+.+.+.|-+|+..+-+|.++. .+ -..........|+|.+..||.+|..++......- ......
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL---~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGF--KL---SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccc--cc---cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 3333444546667777888888888887741 11 1123345568899999999999998776544322 101112
Q ss_pred hHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH-HHH--------------------------
Q 000194 232 WRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE-VAE-------------------------- 284 (1880)
Q Consensus 232 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~-i~~-------------------------- 284 (1880)
.....+...|..+++++.+- ++.+|--|..+||.+-..+.+++.+.+++ ++.
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~-sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDR-SLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcC-ceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence 34456777788888888776 37788888888888766666666655553 332
Q ss_pred ------------------------HHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC--CCc
Q 000194 285 ------------------------IVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP--AER 338 (1880)
Q Consensus 285 ------------------------~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~--~~r 338 (1880)
.++..+++.=-.||++++..+..||...|. | -...+.+|...+.++ ..|
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~-F----A~~aldfLvDMfNDE~~~VR 427 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG-F----AVRALDFLVDMFNDEIEVVR 427 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC-c----HHHHHHHHHHHhccHHHHHH
Confidence 111122233357999999999999987775 4 356778888888764 358
Q ss_pred chHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCC---chHHHHHHHHHHHhcC-CC
Q 000194 339 DSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPV---MEPHVRGLLDIMFSAG-LS 414 (1880)
Q Consensus 339 ~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~---~~~~l~~ll~~l~~~~-ls 414 (1880)
..|..+|..|+....- -..+++.|. ++|.+...+.++.+-+.++. ++ -++ +..-+..++..|-..+ ..
T Consensus 428 L~ai~aL~~Is~~l~i-~eeql~~il----~~L~D~s~dvRe~l~elL~~-~~--~~d~~~i~m~v~~lL~~L~kyPqDr 499 (823)
T KOG2259|consen 428 LKAIFALTMISVHLAI-REEQLRQIL----ESLEDRSVDVREALRELLKN-AR--VSDLECIDMCVAHLLKNLGKYPQDR 499 (823)
T ss_pred HHHHHHHHHHHHHhee-cHHHHHHHH----HHHHhcCHHHHHHHHHHHHh-cC--CCcHHHHHHHHHHHHHHhhhCCCCc
Confidence 8999999988866321 123444443 33333322222222211111 00 000 0111122222222222 34
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 000194 415 TTLVDALEQITVSIPSLLPTIQDRLLDC 442 (1880)
Q Consensus 415 ~~l~~~l~~i~~~~p~l~~~i~~~ll~~ 442 (1880)
++...|+..|..+-+.+.-.+..++++.
T Consensus 500 d~i~~cm~~iGqnH~~lv~s~m~rfl~k 527 (823)
T KOG2259|consen 500 DEILRCMGRIGQNHRRLVLSNMGRFLEK 527 (823)
T ss_pred HHHHHHHHHHhccChhhHHHHHHHHHHh
Confidence 5556677777776666666666666544
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.013 Score=66.37 Aligned_cols=398 Identities=14% Similarity=0.117 Sum_probs=202.9
Q ss_pred HHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccc-ccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccC
Q 000194 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAY-VLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1880)
Q Consensus 601 l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~-v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1880)
.+.+..+++..+..++.++...+|.++-.+... +...+.. +..++.++..+ ....+-.+..++-.++.....-.+-
T Consensus 87 ~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~G-l~~Li~qmmtd--~vevqcnaVgCitnLaT~d~nk~ki 163 (550)
T KOG4224|consen 87 NEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLG-LDLLILQMMTD--GVEVQCNAVGCITNLATFDSNKVKI 163 (550)
T ss_pred hhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccC-hHHHHHHhcCC--CcEEEeeehhhhhhhhccccchhhh
Confidence 444555667777889999999999888765432 1111111 11223333332 3455566777777777542211111
Q ss_pred chHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH--HhHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 000194 680 YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1880)
Q Consensus 680 y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l 757 (1880)
--..-+..+.. +... .+..++.++..++-.|...-. -...+ ..-+|.++..+... +..++.-+..+++.+
T Consensus 164 A~sGaL~pltr-Laks----kdirvqrnatgaLlnmThs~E--nRr~LV~aG~lpvLVsll~s~-d~dvqyycttaisnI 235 (550)
T KOG4224|consen 164 ARSGALEPLTR-LAKS----KDIRVQRNATGALLNMTHSRE--NRRVLVHAGGLPVLVSLLKSG-DLDVQYYCTTAISNI 235 (550)
T ss_pred hhccchhhhHh-hccc----chhhHHHHHHHHHHHhhhhhh--hhhhhhccCCchhhhhhhccC-ChhHHHHHHHHhhhh
Confidence 11112233333 2221 255666666666655542211 01111 12367888887754 567887777777766
Q ss_pred HhhcCcc-cccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCC
Q 000194 758 VQSTGYV-ITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPM 836 (1880)
Q Consensus 758 ~~~~~~~-i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (1880)
+...... +-. ..-|.+++.|..++.+. +++++-.|--+++.+.+-..|....+ +
T Consensus 236 aVd~~~Rk~La-qaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Yq~eiv---------------~-------- 290 (550)
T KOG4224|consen 236 AVDRRARKILA-QAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTEYQREIV---------------E-------- 290 (550)
T ss_pred hhhHHHHHHHH-hcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccchhhhHHH---------------h--------
Confidence 5332111 111 12378999999998755 67888877777777764333321100 0
Q ss_pred cccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcc-hhhHHHHHHHhcCCc-c
Q 000194 837 DEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLP-KVLPDLFHTVRTCDD-Y 914 (1880)
Q Consensus 837 ~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~-~iip~ll~~l~~~~~-~ 914 (1880)
.-.++.|++.|+++...-.- +-+.++.+|.-+.+.. ++..+ .++..++..++..+. .
T Consensus 291 -------------------ag~lP~lv~Llqs~~~plil-asVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEe 349 (550)
T KOG4224|consen 291 -------------------AGSLPLLVELLQSPMGPLIL-ASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEE 349 (550)
T ss_pred -------------------cCCchHHHHHHhCcchhHHH-HHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchh
Confidence 01235677888888653221 2233333333222222 22222 234444444443321 1
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhc-cchhhHHHHH
Q 000194 915 LKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRT-HLPVILPCCI 993 (1880)
Q Consensus 915 ~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~-yl~~l~p~ll 993 (1880)
.+.. ..+++..++.+.+...+. +=.--+|.+.
T Consensus 350 iqch-----------------------------------------------AvstLrnLAasse~n~~~i~esgAi~kl~ 382 (550)
T KOG4224|consen 350 IQCH-----------------------------------------------AVSTLRNLAASSEHNVSVIRESGAIPKLI 382 (550)
T ss_pred hhhh-----------------------------------------------HHHHHHHHhhhhhhhhHHHhhcCchHHHH
Confidence 2222 233333333322222111 1122345555
Q ss_pred HhcccccccCchhhHHHHHHHHHH--Hhcchhhhhh--hhHHHHHHhhcCCCcHHHHHHHHHHHHhhccccc-cc-----
Q 000194 994 QVLSDAERCNDYTYVLDILHTLEV--FGGTLDEHMH--LLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQ-VT----- 1063 (1880)
Q Consensus 994 ~~l~~~~~~~~~~~~~~il~~l~~--~g~~~~~~~~--~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~~~-~~----- 1063 (1880)
..+-|.. -.+...+-.|+.. +.++...++- -++|.++.+.... +.++|..|..+++.++..++ ..
T Consensus 383 eL~lD~p----vsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~v~~YarviEa 457 (550)
T KOG4224|consen 383 ELLLDGP----VSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSDVEHYARVIEA 457 (550)
T ss_pred HHHhcCC----hhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhhhHHHHHHHHH
Confidence 5554421 1222333344443 2333333332 3677777776553 78999999999999877532 11
Q ss_pred -c-hhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhccccccch
Q 000194 1064 -G-HISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFI 1107 (1880)
Q Consensus 1064 -~-~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~fi 1107 (1880)
+ -...|-..|.|++.+.+...+--+..++-.|+.........|+
T Consensus 458 wd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~~~~~~~i 503 (550)
T KOG4224|consen 458 WDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHDLPLTAFI 503 (550)
T ss_pred hcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCccHHHHH
Confidence 1 1234455688888877777788888888888776554444443
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.05 Score=66.72 Aligned_cols=266 Identities=19% Similarity=0.185 Sum_probs=164.1
Q ss_pred HHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccc------
Q 000194 115 MRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVF------ 188 (1880)
Q Consensus 115 L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l------ 188 (1880)
|-.+. .+.|..|+..|.+++=.|.+ |... -....+++.+.+. +..+..|.||+.++...+..+|--.
T Consensus 203 l~~~~-~~~D~~Vrt~A~eglL~L~e--g~kL---~~~~Y~~A~~~ls-D~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLE-HDQDFRVRTHAVEGLLALSE--GFKL---SKACYSRAVKHLS-DDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHh-cCCCcchHHHHHHHHHhhcc--cccc---cHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 44444 37799999999998877665 2222 2334666777664 5566789999999988888875321
Q ss_pred hhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHH-------------HH-----------
Q 000194 189 NVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFE-------------AT----------- 244 (1880)
Q Consensus 189 ~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~-------------~~----------- 244 (1880)
.......|..|..+++|-+-.||.-|+++|+.+-.+-.+- .....-+++.. .+
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~---i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEI---IQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHH---HHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence 2467788999999999999999999999999765532210 00011111111 00
Q ss_pred --------------------------HhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHH
Q 000194 245 --------------------------QDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVR 298 (1880)
Q Consensus 245 --------------------------~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr 298 (1880)
..||.+. -.|+|.+|...+..|..+.+.|-.. -+..++.++++.-..||
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~~----aldfLvDMfNDE~~~VR 427 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAVR----ALDFLVDMFNDEIEVVR 427 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHHH----HHHHHHHHhccHHHHHH
Confidence 1111111 1378888888888887765554333 45566777788899999
Q ss_pred HHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC--CCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCC
Q 000194 299 LSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP--AERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRG 376 (1880)
Q Consensus 299 ~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~--~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~ 376 (1880)
..++.++..++.... .- .+-|+.++..|... +.|...-..|+. +.... ..-++-.+..+...|... +
T Consensus 428 L~ai~aL~~Is~~l~--i~----eeql~~il~~L~D~s~dvRe~l~elL~~-~~~~d---~~~i~m~v~~lL~~L~ky-P 496 (823)
T KOG2259|consen 428 LKAIFALTMISVHLA--IR----EEQLRQILESLEDRSVDVREALRELLKN-ARVSD---LECIDMCVAHLLKNLGKY-P 496 (823)
T ss_pred HHHHHHHHHHHHHhe--ec----HHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCCCc---HHHHHHHHHHHHHHhhhC-C
Confidence 999999988886532 11 33455566666543 235444444433 11111 122334445555555322 2
Q ss_pred CCCchHHHHHHHHHHHhCCCchHHHHHHHH
Q 000194 377 KPSLEALACVGNIARAMGPVMEPHVRGLLD 406 (1880)
Q Consensus 377 ~~~~~a~~~l~~la~~~g~~~~~~l~~ll~ 406 (1880)
..+.+++.|++.|+..-+..+...+..++.
T Consensus 497 qDrd~i~~cm~~iGqnH~~lv~s~m~rfl~ 526 (823)
T KOG2259|consen 497 QDRDEILRCMGRIGQNHRRLVLSNMGRFLE 526 (823)
T ss_pred CCcHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence 234589999999988876655555555553
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.47 Score=68.26 Aligned_cols=406 Identities=16% Similarity=0.112 Sum_probs=214.8
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hhhhh----------
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-ELDVQ---------- 1358 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~~~~---------- 1358 (1880)
..+......+.|..|+-+++...... ++.....-.|..+|.+.|+.+.+...++.+.. ..+..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 34667777888999998887776532 34456778899999999999999988875432 11110
Q ss_pred --------hcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcC--CCChHHHHh
Q 000194 1359 --------LKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWT--PAEPAARLE 1428 (1880)
Q Consensus 1359 --------~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~--~~~~~~~~~ 1428 (1880)
....-+.+.|++++|...|++.+...++. .....++-.++.+.|+|+.-....+.... +.+....
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~---~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~-- 422 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD---SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAV-- 422 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--
Confidence 00112457899999999999998764432 34566778899999999877766654322 1111111
Q ss_pred HHHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhh
Q 000194 1429 MAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQL 1508 (1880)
Q Consensus 1429 ~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L 1508 (1880)
......+..++++....++..++.............+ ..+.-...+......++ |..| +
T Consensus 423 ---~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l-----~~~~~~~~a~~~~~~g~----~~eA---------~ 481 (1157)
T PRK11447 423 ---RGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL-----QNDRLAQQAEALENQGK----WAQA---------A 481 (1157)
T ss_pred ---HHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHCCC----HHHH---------H
Confidence 1122233445666666665544321000000000000 00000000000001111 1111 1
Q ss_pred hhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhh-cCCcccHHHHHHHHHHHHhcCChhH
Q 000194 1509 SELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALV-LPPTEDVETWLKFASLCRKSGRISQ 1587 (1880)
Q Consensus 1509 ~ELeE~i~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~v-l~~~e~~~~~lk~a~laRk~g~~~~ 1587 (1880)
..++++++. .|.. ....-.+-..+ ....+++.=.. ..+.++ ..| ++...+...+-+..+.|+.+.
T Consensus 482 ~~~~~Al~~--~P~~----~~~~~~LA~~~-----~~~G~~~~A~~--~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 482 ELQRQRLAL--DPGS----VWLTYRLAQDL-----RQAGQRSQADA--LMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HHHHHHHHh--CCCC----HHHHHHHHHHH-----HHcCCHHHHHH--HHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHH
Confidence 112222211 1110 11000011111 11122221111 122222 123 446667777777788889988
Q ss_pred HHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcc
Q 000194 1588 ARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTN 1667 (1880)
Q Consensus 1588 a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1667 (1880)
|...+.++..-........+.........++.+..+-..|+ ..+|+..++. .+ .
T Consensus 548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~---~~eA~~~l~~-------~p---------------~- 601 (1157)
T PRK11447 548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK---EAEAEALLRQ-------QP---------------P- 601 (1157)
T ss_pred HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC---HHHHHHHHHh-------CC---------------C-
Confidence 88887765321110000000000001223456666666774 5778876651 00 0
Q ss_pred hhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHH
Q 000194 1668 VPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVT 1747 (1880)
Q Consensus 1668 ~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~ 1747 (1880)
....++.+|.|..+. ...++.+..|+++++.+|++..+|..+|...... + -...|++
T Consensus 602 ---~~~~~~~La~~~~~~------g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~-------g-------~~~eA~~ 658 (1157)
T PRK11447 602 ---STRIDLTLADWAQQR------GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ-------G-------DLAAARA 658 (1157)
T ss_pred ---CchHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-------C-------CHHHHHH
Confidence 123456788887665 4578999999999999999999999998764431 1 2236677
Q ss_pred HHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCC
Q 000194 1748 GYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHV 1796 (1880)
Q Consensus 1748 ~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~i 1796 (1880)
.|-+.+... ........++-.+|...|...+..+.+++.+..-
T Consensus 659 ~l~~ll~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 659 QLAKLPATA------NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHhccC------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 777666543 2233445567778888888877777666665443
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.13 Score=66.95 Aligned_cols=418 Identities=15% Similarity=0.130 Sum_probs=201.5
Q ss_pred CCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 000194 143 GAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACL 222 (1880)
Q Consensus 143 g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1880)
|+..-+.++++++|.-.|..+ +...+..++..|..-..| .......-..++..+..+| .+...|-++.
T Consensus 210 G~l~m~iie~Elkr~~~w~~~----------l~~~~~~~~~~~~~~~~~-~~~~kk~~~l~~kQeqLlr-v~~~lLlNLA 277 (708)
T PF05804_consen 210 GSLCMEIIEHELKRHDLWQEE----------LRKKKKAAEEKPEAKKDY-EKELKKLQTLIRKQEQLLR-VAFYLLLNLA 277 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHhhhhhhccchhhhhhH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 445566778888877766431 111111223333221111 1222333344444445555 3444454444
Q ss_pred HHHhhhchhhHHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc--hhhhHHHHHHHHHHHHHHhhcchhHHHH
Q 000194 223 RVIEKRETRWRVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT--GEFMMSRYREVAEIVLRYLEHRDRLVRL 299 (1880)
Q Consensus 223 ~~i~~r~~~~~~~~~-~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~--~~~~~~~~~~i~~~ll~~~~~~~~~Vr~ 299 (1880)
+... ...... ..+++-+...|.+.+ .+....++.+|.-|.-.. .+.|. -..+++.+.+.+.+++..++.
T Consensus 278 ed~~-----ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl~s~~~~l~~ 349 (708)
T PF05804_consen 278 EDPR-----VELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLLPSENEDLVN 349 (708)
T ss_pred cChH-----HHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHhcCCCHHHHH
Confidence 3222 111211 345555666666553 454554444554443211 11221 123677788888888888999
Q ss_pred HHHHHhHhHhhhCh--hhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchh-hhhhhhhHHHHHHHHhhcCC-C
Q 000194 300 SITSLLPRIAHFLR--DRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDG-ELFHYLPTITSHLREAIAPR-R 375 (1880)
Q Consensus 300 ~~~~~i~~la~~~~--~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la~~v~~-~~~p~l~~i~~~l~~~l~~~-~ 375 (1880)
.++.++-.++.... ..+++ ..++|.|...|.+++.|..++..|-+++..-.. .+..|-+ .++.+.+.+... .
T Consensus 350 ~aLrlL~NLSfd~~~R~~mV~---~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~Td-cIp~L~~~Ll~~~~ 425 (708)
T PF05804_consen 350 VALRLLFNLSFDPELRSQMVS---LGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTD-CIPQLMQMLLENSE 425 (708)
T ss_pred HHHHHHHHhCcCHHHHHHHHH---CCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcc-hHHHHHHHHHhCCC
Confidence 99999998875432 12222 346777778888777777788878777653221 2333333 345554444322 2
Q ss_pred CCCCchHHHHHHHHHHHhCCCchHH-HH-HHHHHHHhc---CCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC
Q 000194 376 GKPSLEALACVGNIARAMGPVMEPH-VR-GLLDIMFSA---GLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKS 450 (1880)
Q Consensus 376 ~~~~~~a~~~l~~la~~~g~~~~~~-l~-~ll~~l~~~---~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~ 450 (1880)
.+...+++..+-.++..- .-... .+ ..++.|+.. .-++-+...++.++.+-++......+-+-+.+..+..+
T Consensus 426 ~~v~~eliaL~iNLa~~~--rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~- 502 (708)
T PF05804_consen 426 EEVQLELIALLINLALNK--RNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSG- 502 (708)
T ss_pred ccccHHHHHHHHHHhcCH--HHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcC-
Confidence 222223332222222210 00010 01 122333321 12333456677776654443333222222222211000
Q ss_pred CCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccC---------CCcchhhHHHHHhhhccCCChHHHHH
Q 000194 451 HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFK---------GHDLLEFARDSVVLYLDDEDKATRKD 521 (1880)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~---------~~~l~~~v~~~~~~~l~~~~~~VR~a 521 (1880)
++.+....++.+|+.+... .+.+.||+.+.+.+... ++++...
T Consensus 503 --------------------------~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~--~dDl~LE 554 (708)
T PF05804_consen 503 --------------------------DSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGAS--EDDLLLE 554 (708)
T ss_pred --------------------------CcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCC--ChHHHHH
Confidence 1223456677777766433 24566777766655443 3456666
Q ss_pred HHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc---C-CCCcchhhcc
Q 000194 522 AALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY---G-NRGFDDFLAQ 597 (1880)
Q Consensus 522 Aa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~---~-~~~fd~~L~~ 597 (1880)
++..++.+.. +..+. .+-. ...++..++ .|+.. -.| |.++...++-+|. . ....+..+.+
T Consensus 555 ~Vi~~gtla~-d~~~A---~lL~---------~sgli~~Li-~LL~~-kqe-DdE~VlQil~~f~~ll~h~~tr~~ll~~ 618 (708)
T PF05804_consen 555 VVILLGTLAS-DPECA---PLLA---------KSGLIPTLI-ELLNA-KQE-DDEIVLQILYVFYQLLFHEETREVLLKE 618 (708)
T ss_pred HHHHHHHHHC-CHHHH---HHHH---------hCChHHHHH-HHHHh-hCc-hHHHHHHHHHHHHHHHcChHHHHHHHhc
Confidence 6666654432 21110 0000 001122222 23322 223 4455555554442 0 1111223345
Q ss_pred HhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCc
Q 000194 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNP 631 (1880)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p 631 (1880)
.+.+..++..++|.+.+||..+-.+|.-++++.+
T Consensus 619 ~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 619 TEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 5678888999999999999999999988888774
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.056 Score=64.88 Aligned_cols=104 Identities=13% Similarity=0.236 Sum_probs=71.9
Q ss_pred CChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhh
Q 000194 81 NDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDW 160 (1880)
Q Consensus 81 ~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~ 160 (1880)
.....+.|++.++....+.. .++.+...+|.++|..-+. +.-.-|--.+|+++-+++.. ...+++++.-+..+-.+
T Consensus 236 ~smknq~a~V~lvr~~~~ll-~~n~q~~~q~rpfL~~wls-~k~emV~lE~Ar~v~~~~~~--nv~~~~~~~~vs~L~~f 311 (898)
T COG5240 236 ASMKNQLAGVLLVRATVELL-KENSQALLQLRPFLNSWLS-DKFEMVFLEAARAVCALSEE--NVGSQFVDQTVSSLRTF 311 (898)
T ss_pred cccccchhheehHHHHHHHH-HhChHHHHHHHHHHHHHhc-CcchhhhHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHH
Confidence 34567788888887777664 2345555667788887774 22245556678888887764 35677888777766555
Q ss_pred hcCCCcchhHHHHHHHHHHHHhhcCccch
Q 000194 161 LRGDRVEYRRFAAVLILKEMAENASTVFN 189 (1880)
Q Consensus 161 l~~~~~~~~R~aA~~~l~~la~~~p~~l~ 189 (1880)
|.. .+...|.+|+.+|.+||..-|..+.
T Consensus 312 L~s-~rv~~rFsA~Riln~lam~~P~kv~ 339 (898)
T COG5240 312 LKS-TRVVLRFSAMRILNQLAMKYPQKVS 339 (898)
T ss_pred Hhc-chHHHHHHHHHHHHHHHhhCCceee
Confidence 644 4457899999999999988776543
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0067 Score=67.83 Aligned_cols=340 Identities=16% Similarity=0.188 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc------chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHH
Q 000194 65 RFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGE------NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHL 138 (1880)
Q Consensus 65 ~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~------~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L 138 (1880)
++.+++ ..+.+-+.|.|...+.+|.+-+..+++....- ..+.+.||..|+...=+ | -.--.|||++..+
T Consensus 68 q~~~el-p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~---~-mlqfEAaWalTNi 142 (526)
T COG5064 68 QFYSEL-PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQR---D-MLQFEAAWALTNI 142 (526)
T ss_pred Hhhhhh-HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcch---h-HHHHHHHHHHhhh
Confidence 344444 33444566789999999999999998874211 13346888888864322 1 1223799999988
Q ss_pred hhhCCCCchhHHHH-HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchH--HHHHHHHHHhcCCch--hHHHH
Q 000194 139 ARAGGAMTADEVEF-QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVA--EFVDAIWVALRDPTL--AVRER 213 (1880)
Q Consensus 139 ~~~~g~~~~~~v~~-~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~--~i~~~i~~~l~D~~~--~VR~a 213 (1880)
+.....-+.-.|+. -++..++.|. +.....|..|+.+|+-+|..++. +..|+- ..++.++..+....+ .+-+.
T Consensus 143 aSGtt~QTkvVvd~~AVPlfiqlL~-s~~~~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn 220 (526)
T COG5064 143 ASGTTQQTKVVVDAGAVPLFIQLLS-STEDDVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRN 220 (526)
T ss_pred ccCcccceEEEEeCCchHHHHHHHc-CchHHHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHH
Confidence 76321111111221 3555566554 34456899999999999865443 122221 234444554444433 32233
Q ss_pred HHHHHHHHHHHHhhhchhhHHHH--HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH-HHHHHHHHh
Q 000194 214 AVEALRACLRVIEKRETRWRVQW--YYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE-VAEIVLRYL 290 (1880)
Q Consensus 214 A~~al~~~~~~i~~r~~~~~~~~--~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~-i~~~ll~~~ 290 (1880)
+-..|..+. |.....+.| +.+.+|.+..-+-.- +.++..-|+-++.-|.+...+.+..-++. +...++..+
T Consensus 221 ~TWtLSNlc-----RGknP~P~w~~isqalpiL~KLiys~-D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElL 294 (526)
T COG5064 221 ATWTLSNLC-----RGKNPPPDWSNISQALPILAKLIYSR-DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELL 294 (526)
T ss_pred hHHHHHHhh-----CCCCCCCchHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHh
Confidence 445555443 332233344 456666665544443 36788888888888877766655544442 344677778
Q ss_pred hcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCCCC--cchHHHHHHHHHhhchhhhhhhhh-HHHHH
Q 000194 291 EHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIPAE--RDSGFIALGEMAGALDGELFHYLP-TITSH 366 (1880)
Q Consensus 291 ~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~~--r~~a~~alg~la~~v~~~~~p~l~-~i~~~ 366 (1880)
.|.+..|+.-++..+|.+..-+..+..- .+ -..++.+...|.++++ |..|+-+|+++...--+.+...++ .+++-
T Consensus 295 s~~sa~iqtPalR~vGNIVTG~D~QTqv-iI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPp 373 (526)
T COG5064 295 SHESAKIQTPALRSVGNIVTGSDDQTQV-IINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPP 373 (526)
T ss_pred cCccccccCHHHHhhcCeeecCccceeh-heecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchH
Confidence 8999889988999999887543322100 00 2334455555666554 667888888874433333222221 12333
Q ss_pred HHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000194 367 LREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQ 423 (1880)
Q Consensus 367 l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~ 423 (1880)
+...+....-+.+.+| ||+..-...|..=.| +.+..|++.|.-.++.+.|..
T Consensus 374 Li~lls~ae~k~kKEA--CWAisNatsgg~~~P---D~iryLv~qG~IkpLc~~L~~ 425 (526)
T COG5064 374 LIHLLSSAEYKIKKEA--CWAISNATSGGLNRP---DIIRYLVSQGFIKPLCDLLDV 425 (526)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHhhhccccCCc---hHHHHHHHccchhHHHHHHhc
Confidence 3333322211111233 444433333443333 335555666655555554443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=3.2 Score=59.91 Aligned_cols=194 Identities=13% Similarity=0.010 Sum_probs=118.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccc----cCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENV----RYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~----~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~ 1642 (1880)
++...|..++.+..+.|+++.|...+.++...+|....... .........+..+.....+|+ ..+|+..+++.
T Consensus 301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~---~~eA~~~~~~A 377 (1157)
T PRK11447 301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANN---LAQAERLYQQA 377 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCC---HHHHHHHHHHH
Confidence 56889999999999999999999999998877653210000 000000112233555666774 68899999887
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000194 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1880)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1880)
+..... .+.++..+|.-.... ...++.++.|+++++.+|+...+|+.++...
T Consensus 378 l~~~P~----------------------~~~a~~~Lg~~~~~~------g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 378 RQVDNT----------------------DSYAVLGLGDVAMAR------KDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHhCCC----------------------CHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 653110 112333444443332 2457888999999999999999999887764
Q ss_pred HH-----HHHhhhc--cCCC---------------------CchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHH
Q 000194 1723 TA-----VMSHYTL--RGLP---------------------SVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLT 1774 (1880)
Q Consensus 1723 ~~-----~~~~~~~--~~~~---------------------~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLt 1774 (1880)
.. ....... ...+ .....-...|++.|-+++... +. ......++-.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-----P~-~~~~~~~LA~ 503 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-----PG-SVWLTYRLAQ 503 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHH
Confidence 21 1100000 0000 000123468888999988875 22 3445677778
Q ss_pred HHHhcCCcHHHHHHHHhcccCCC
Q 000194 1775 LWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1775 Lwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
+++..|...+....+++.+..-|
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P 526 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKP 526 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCC
Confidence 88888888877777776654333
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.048 Score=67.07 Aligned_cols=179 Identities=18% Similarity=0.161 Sum_probs=113.1
Q ss_pred HHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHH
Q 000194 562 VEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRH 641 (1880)
Q Consensus 562 l~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~ 641 (1880)
+..|+. ++.|+++.||..+.++|+.. ..+.....|...+.|+++.||..++..++..... | .+.+
T Consensus 88 ~~~L~~-~L~d~~~~vr~aaa~ALg~i-------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-~---~~~L--- 152 (410)
T TIGR02270 88 LRSVLA-VLQAGPEGLCAGIQAALGWL-------GGRQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-P---GPAL--- 152 (410)
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHhcC-------CchHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-h---HHHH---
Confidence 334444 45789999999999999631 2245678888889999999999999888863321 1 1222
Q ss_pred HHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 000194 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF 721 (1880)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~ 721 (1880)
... ++ + .++.+|..|+.+||.+-... .++.|...+.+. ++.|+..++.+++.+..
T Consensus 153 -~~~---L~-d-~d~~Vra~A~raLG~l~~~~----------a~~~L~~al~d~-----~~~VR~aA~~al~~lG~---- 207 (410)
T TIGR02270 153 -EAA---LT-H-EDALVRAAALRALGELPRRL----------SESTLRLYLRDS-----DPEVRFAALEAGLLAGS---- 207 (410)
T ss_pred -HHH---hc-C-CCHHHHHHHHHHHHhhcccc----------chHHHHHHHcCC-----CHHHHHHHHHHHHHcCC----
Confidence 222 33 3 68899999999999885421 122244445553 88999998888765532
Q ss_pred chhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000194 722 GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 722 ~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~l 801 (1880)
++..+.++....+. ....+..+...++.. |. |..++.|..+++.+ .+|+.++.++|.+
T Consensus 208 ------~~A~~~l~~~~~~~-g~~~~~~l~~~lal~----~~--------~~a~~~L~~ll~d~---~vr~~a~~AlG~l 265 (410)
T TIGR02270 208 ------RLAWGVCRRFQVLE-GGPHRQRLLVLLAVA----GG--------PDAQAWLRELLQAA---ATRREALRAVGLV 265 (410)
T ss_pred ------HhHHHHHHHHHhcc-CccHHHHHHHHHHhC----Cc--------hhHHHHHHHHhcCh---hhHHHHHHHHHHc
Confidence 12334444433322 222333233233321 21 46788888888754 4999999999998
Q ss_pred c
Q 000194 802 G 802 (1880)
Q Consensus 802 g 802 (1880)
|
T Consensus 266 g 266 (410)
T TIGR02270 266 G 266 (410)
T ss_pred C
Confidence 7
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.089 Score=68.51 Aligned_cols=367 Identities=17% Similarity=0.153 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhc
Q 000194 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD 740 (1880)
Q Consensus 661 ~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d 740 (1880)
.++.+|.++++...-..+-.-..++..|++.+..+ +..+...+...+..|+-.....-.=--..++|.+.+.+..
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~-----n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRE-----NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC
Confidence 56777888887654333333345677777777653 5666666666777666432211111123578888888865
Q ss_pred CCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcc
Q 000194 741 GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHG 820 (1880)
Q Consensus 741 ~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~ 820 (1880)
. +.+.+..|+..|..+....... +...--.+++.|..+|+++ ..+.-+++++..+..-|..+.
T Consensus 343 ~-~~~l~~~aLrlL~NLSfd~~~R--~~mV~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~----------- 405 (708)
T PF05804_consen 343 E-NEDLVNVALRLLFNLSFDPELR--SQMVSLGLIPKLVELLKDP---NFREVALKILYNLSMDDEARS----------- 405 (708)
T ss_pred C-CHHHHHHHHHHHHHhCcCHHHH--HHHHHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHH-----------
Confidence 4 4567888999888876554332 1111123556666677654 345556666665543222210
Q ss_pred cccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCc--c
Q 000194 821 EVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYL--P 898 (1880)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l--~ 898 (1880)
++ . | +-+++.|+++|-..+.......++..+.++...- +...-+ .
T Consensus 406 ----------------------~f----~----~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~--rnaqlm~~g 452 (708)
T PF05804_consen 406 ----------------------MF----A----Y-TDCIPQLMQMLLENSEEEVQLELIALLINLALNK--RNAQLMCEG 452 (708)
T ss_pred ----------------------HH----h----h-cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH--HHHHHHHhc
Confidence 00 0 1 1134455554433221111112222222222110 000000 1
Q ss_pred hhhHHHHHH-HhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHh
Q 000194 899 KVLPDLFHT-VRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLAL 977 (1880)
Q Consensus 899 ~iip~ll~~-l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l 977 (1880)
..++.++.. +++.+ .+.-.+..+++.=-...+..+.+|+.++...+.. .+. + ...+.+++.++.--
T Consensus 453 ~gL~~L~~ra~~~~D-~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~----~~~-----e---e~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 453 NGLQSLMKRALKTRD-PLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSS----GDS-----E---EFVVECLGILANLT 519 (708)
T ss_pred CcHHHHHHHHHhccc-HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhc----CCc-----H---HHHHHHHHHHHhcc
Confidence 223333332 22222 1111111111111112234466777777766542 110 1 14555555554322
Q ss_pred --hhhhhccch--hhHHHHHHhcccccccCchhhHHHHHHHHHHHhcc--hhhhh--hhhHHHHHHhhcC-CCcHHHHHH
Q 000194 978 --NDEFRTHLP--VILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGT--LDEHM--HLLLPALIRLFKV-DAPVDIRRA 1048 (1880)
Q Consensus 978 --~~~f~~yl~--~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~--~~~~~--~~ilp~l~~~l~~-~~~~~vr~~ 1048 (1880)
+.++..++. .++|.+.+.|.... +.+ ...+.++-.+.++... ....+ ..+++.++.++.. ....+.-..
T Consensus 520 ~~~ld~~~ll~~~~llp~L~~~L~~g~-~~d-Dl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQ 597 (708)
T PF05804_consen 520 IPDLDWAQLLQEYNLLPWLKDLLKPGA-SED-DLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQ 597 (708)
T ss_pred cCCcCHHHHHHhCCHHHHHHHHhCCCC-CCh-HHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHH
Confidence 335555553 68899998886432 222 2333332222222211 11222 1468888888853 245666677
Q ss_pred HHHHHHhhcccccccchh---HhHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 000194 1049 AIETLTRLIPRVQVTGHI---SSLVHHLKLVLDGKNDELRKDAVDALCCLAH 1097 (1880)
Q Consensus 1049 ai~~l~~l~~~~~~~~~~---~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~ 1097 (1880)
.+-++..+...-.-.+++ +.++.-++..+++.|+++|+.+=.+|-.++.
T Consensus 598 il~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 598 ILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred HHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 788888887663322222 4567778899999999999888777766653
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.014 Score=68.99 Aligned_cols=196 Identities=18% Similarity=0.208 Sum_probs=132.5
Q ss_pred HHHHhcCC-chhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHH
Q 000194 199 IWVALRDP-TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMS 277 (1880)
Q Consensus 199 i~~~l~D~-~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~ 277 (1880)
.+..+++. ...-|+.| +.++...+.+..-..=.+++..++..+..-|++..+.-.+.-|+.+|++++++.+.-+..
T Consensus 291 ~l~~~~g~e~a~~~k~a---lsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D 367 (516)
T KOG2956|consen 291 LLKEISGSERASERKEA---LSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD 367 (516)
T ss_pred HHHhccCccchhHHHHH---HHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence 44555544 33334444 334444443222122346688888888888887544455777888999999977666666
Q ss_pred HHHHHHHHHHHHh-hcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcc-hHHHHHHHHHhhchh-
Q 000194 278 RYREVAEIVLRYL-EHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERD-SGFIALGEMAGALDG- 354 (1880)
Q Consensus 278 ~~~~i~~~ll~~~-~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~-~a~~alg~la~~v~~- 354 (1880)
+-+-.+..++..- +..+..++.++=.++-.++.+.|..-+. .+.+.+++ ....|. +++.++..+.+.+..
T Consensus 368 stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~----~i~~~Ilt---~D~~~~~~~iKm~Tkl~e~l~~E 440 (516)
T KOG2956|consen 368 STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIV----NISPLILT---ADEPRAVAVIKMLTKLFERLSAE 440 (516)
T ss_pred hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHH----HHhhHHhc---CcchHHHHHHHHHHHHHhhcCHH
Confidence 6665555666554 4456677888878888888888865332 23333333 223454 455588888888765
Q ss_pred hhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhC-CCchHHHHHH
Q 000194 355 ELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMG-PVMEPHVRGL 404 (1880)
Q Consensus 355 ~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g-~~~~~~l~~l 404 (1880)
++-+.+++|++.+.++.......++..++-|+-.+...+| +.|.||+..+
T Consensus 441 eL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 441 ELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred HHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 4668899999999999977766777889999999999999 7899999865
|
|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.076 Score=65.97 Aligned_cols=259 Identities=14% Similarity=0.217 Sum_probs=162.0
Q ss_pred chHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhc-----CCcchhHHHHHHHHHHHH
Q 000194 854 YSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRT-----CDDYLKDYITWKLGTLVS 928 (1880)
Q Consensus 854 ~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~-----~~~~~~~~~~~~l~~lv~ 928 (1880)
+...++..|..+++-+.. ....-+..++|.++...+..+.|+.+.+++.+...++. ++|..--++|..+|.+++
T Consensus 23 ~~~~ll~~Lf~~i~~~~s-~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir 101 (435)
T PF03378_consen 23 FAQQLLQNLFALIEKPGS-AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIR 101 (435)
T ss_dssp CHHHHHHHHHHHHHTT-S-TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHH
Confidence 346778888888854432 33456999999999999999999999999988877642 345567789999999999
Q ss_pred HHH----HhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhh-hhhhccchhhHHHHHHhcccccccC
Q 000194 929 IVR----QHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALN-DEFRTHLPVILPCCIQVLSDAERCN 1003 (1880)
Q Consensus 929 ~~~----~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~-~~f~~yl~~l~p~ll~~l~~~~~~~ 1003 (1880)
.+. ..+..+-+.+++.+...++..-. .....++++++.+..... +.+-+....++|.++.---- +...
T Consensus 102 ~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~------EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lW-e~~g 174 (435)
T PF03378_consen 102 FVCEADPEAVSQFEEALFPPFQEILQQDVQ------EFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALW-ERRG 174 (435)
T ss_dssp HS-GGGHH---HHHHHHHHHHHHHHHTT-T------TTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGG-GSTT
T ss_pred hccCCChhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchh-ccCC
Confidence 754 23557777888888877775421 123357777777776665 56666677777777743211 1122
Q ss_pred chhhHHHHHHHHHHHhcch---hhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc---ccccchhHhHHHHHHHhh
Q 000194 1004 DYTYVLDILHTLEVFGGTL---DEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR---VQVTGHISSLVHHLKLVL 1077 (1880)
Q Consensus 1004 ~~~~~~~il~~l~~~g~~~---~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~---~~~~~~~~~ii~~l~~~l 1077 (1880)
.-....+.++++..-+... ..++..++..+.+++.....+ ..+.+.+..+... ..+.+|+..|+..+.+=|
T Consensus 175 niPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D---~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RL 251 (435)
T PF03378_consen 175 NIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND---HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRL 251 (435)
T ss_dssp THHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH---HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc---hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 2334567777776544332 367777777777777543333 3455556555544 346789999998877666
Q ss_pred C-CCCHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHhCCCCchhHHHHHHHH
Q 000194 1078 D-GKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRL 1131 (1880)
Q Consensus 1078 ~-~~~~~l~~~al~~L~~l~~~~g~~f~~fip~i~~~l~~~~~~~~~~~~~~~~~ 1131 (1880)
. ++....++..+-.++.++...|.++ +...+. +++..-|..+.+++
T Consensus 252 q~skT~kf~~~fv~F~~~~~~~~g~~~------li~~id--~IQ~glF~~il~~v 298 (435)
T PF03378_consen 252 QSSKTEKFVKRFVVFLSLFAIKYGPDF------LIQTID--SIQPGLFGMILEKV 298 (435)
T ss_dssp HHC--HHHHHHHHHHHHHHHHHH-HHH------HHHHHH--TTSTTHHHHHHHHT
T ss_pred hhCCcHHHHHHHHHHHHHHHHHcCHHH------HHHHHH--HhcCCcHHHHHHHH
Confidence 5 4446677778888888888887764 333332 25555566555543
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.02 Score=67.72 Aligned_cols=160 Identities=13% Similarity=0.080 Sum_probs=116.0
Q ss_pred CCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhH-HHHHHHHHHH
Q 000194 142 GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAV-RERAVEALRA 220 (1880)
Q Consensus 142 ~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~V-R~aA~~al~~ 220 (1880)
+-+.|.+++..++..++|.|.+..++..|.-|+.+|++++.+.|..|+.+..-.+..++.+-.|++..| |.|+.+|+..
T Consensus 319 sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~ 398 (516)
T KOG2956|consen 319 SFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTT 398 (516)
T ss_pred chhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 446788899999999999998778888999999999999999999999999999999999999998765 5555555554
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH-cchhhhHHHHHHHHHHHHHHhhcchhHHHH
Q 000194 221 CLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLR-NTGEFMMSRYREVAEIVLRYLEHRDRLVRL 299 (1880)
Q Consensus 221 ~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~-~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~ 299 (1880)
+..+... ..+..+.+.++. . |....-+++.++..+.+ ...|.+..-++++.+.++..-++.+..||+
T Consensus 399 las~~P~-------~~I~~i~~~Ilt----~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRK 466 (516)
T KOG2956|consen 399 LASHLPL-------QCIVNISPLILT----A-DEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRK 466 (516)
T ss_pred HHhhCch-------hHHHHHhhHHhc----C-cchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhh
Confidence 4433221 123333343333 2 22333444446666666 455777788888999999988999999999
Q ss_pred HHHHHhHhHhhhCh
Q 000194 300 SITSLLPRIAHFLR 313 (1880)
Q Consensus 300 ~~~~~i~~la~~~~ 313 (1880)
+++-++-.+..--+
T Consensus 467 taVfCLVamv~~vG 480 (516)
T KOG2956|consen 467 TAVFCLVAMVNRVG 480 (516)
T ss_pred hHHHhHHHHHHHHh
Confidence 98866665544333
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.056 Score=68.40 Aligned_cols=219 Identities=14% Similarity=0.166 Sum_probs=145.4
Q ss_pred hhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHH
Q 000194 76 GLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVK 155 (1880)
Q Consensus 76 ~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~ 155 (1880)
..++.+.+..|-+|+.-+..+++-.....-.+-.+........+. +.|.=|.-.|-+.+..|++. +.. ..++
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lk-dedsyvyLnaI~gv~~Lcev---y~e----~il~ 805 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLK-DEDSYVYLNAIRGVVSLCEV---YPE----DILP 805 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhc-ccCceeeHHHHHHHHHHHHh---cch----hhHH
Confidence 445668888999999999999875321111122233334444443 55776777777777777775 122 2344
Q ss_pred HHHh-hhcCCC----cchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhch
Q 000194 156 MALD-WLRGDR----VEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRET 230 (1880)
Q Consensus 156 ~~~~-~l~~~~----~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~ 230 (1880)
...+ |..+.+ +...|.+ .++..++..-+..+..|...++...+.++|||+..-|-.++..+++++....-+-
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v- 882 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV- 882 (982)
T ss_pred HHHHHHHhcccCCCccceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh-
Confidence 4444 443221 2233444 7788888888999999999999999999999999999999999999998766222
Q ss_pred hhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH----HHHHHHHHh-hcchhHHHHHHHHHh
Q 000194 231 RWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE----VAEIVLRYL-EHRDRLVRLSITSLL 305 (1880)
Q Consensus 231 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~----i~~~ll~~~-~~~~~~Vr~~~~~~i 305 (1880)
..|+..++..+..-....+..-+|.+|+.++..++.+.|+.+.|-+.. ....+..+. .|++..+|..++.++
T Consensus 883 ---sd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 883 ---SDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred ---hHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 237766666665544333346789999999999999999877774433 333444443 456666776666555
Q ss_pred HhH
Q 000194 306 PRI 308 (1880)
Q Consensus 306 ~~l 308 (1880)
..+
T Consensus 960 eei 962 (982)
T KOG4653|consen 960 EEI 962 (982)
T ss_pred HHH
Confidence 443
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.057 Score=66.41 Aligned_cols=214 Identities=18% Similarity=0.071 Sum_probs=137.3
Q ss_pred HHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 000194 504 RDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFS 583 (1880)
Q Consensus 504 ~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~ 583 (1880)
-+.+...+++.+++||.+++.+++.+-. ...... |+ ..+.++++.||..++.
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~-----------------------~~a~~~----L~-~~L~~~~p~vR~aal~ 139 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG-----------------------RQAEPW----LE-PLLAASEPPGRAIGLA 139 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc-----------------------hHHHHH----HH-HHhcCCChHHHHHHHH
Confidence 4556677888899999999988865321 111222 22 2357899999999998
Q ss_pred hccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHH
Q 000194 584 SLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESA 663 (1880)
Q Consensus 584 ~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~ 663 (1880)
++.. .. .+-.+.+..+++|+++.||..|+.++|.+.... ..|.+.. ...+ .++.+|..|+
T Consensus 140 al~~-r~-------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~---a~~~L~~--------al~d-~~~~VR~aA~ 199 (410)
T TIGR02270 140 ALGA-HR-------HDPGPALEAALTHEDALVRAAALRALGELPRRL---SESTLRL--------YLRD-SDPEVRFAAL 199 (410)
T ss_pred HHHh-hc-------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcccc---chHHHHH--------HHcC-CCHHHHHHHH
Confidence 8852 11 122566777889999999999999999987643 2343332 1234 6788999998
Q ss_pred HHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCc
Q 000194 664 KLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAA 743 (1880)
Q Consensus 664 ~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~ 743 (1880)
..++.+.. + .-...++...... .......+...++.. |. +..++.+...+++.
T Consensus 200 ~al~~lG~--~--------~A~~~l~~~~~~~-----g~~~~~~l~~~lal~----~~------~~a~~~L~~ll~d~-- 252 (410)
T TIGR02270 200 EAGLLAGS--R--------LAWGVCRRFQVLE-----GGPHRQRLLVLLAVA----GG------PDAQAWLRELLQAA-- 252 (410)
T ss_pred HHHHHcCC--H--------hHHHHHHHHHhcc-----CccHHHHHHHHHHhC----Cc------hhHHHHHHHHhcCh--
Confidence 88866532 1 1223444433322 122222222222211 22 26777778887764
Q ss_pred hhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccc
Q 000194 744 VTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHA 808 (1880)
Q Consensus 744 ~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~ 808 (1880)
.+|..++.++|.+ | .|..++.|+..+.++ .+|+.+-.++..|-.+|...
T Consensus 253 -~vr~~a~~AlG~l----g--------~p~av~~L~~~l~d~---~~aR~A~eA~~~ItG~~l~~ 301 (410)
T TIGR02270 253 -ATRREALRAVGLV----G--------DVEAAPWCLEAMREP---PWARLAGEAFSLITGMDVAL 301 (410)
T ss_pred -hhHHHHHHHHHHc----C--------CcchHHHHHHHhcCc---HHHHHHHHHHHHhhCCCcch
Confidence 3899999999975 2 256788888888754 48888988888876665543
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.53 Score=56.61 Aligned_cols=146 Identities=12% Similarity=0.094 Sum_probs=116.2
Q ss_pred CCcchhHHHHHHHHHHHHhhcCccch--hchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 000194 164 DRVEYRRFAAVLILKEMAENASTVFN--VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMF 241 (1880)
Q Consensus 164 ~~~~~~R~aA~~~l~~la~~~p~~l~--~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l 241 (1880)
+..|+.|....-++.++.. |..+- +-+.+++..+..-.+||+..+|..|+..|+...+. .+.....+++.++
T Consensus 228 s~~~~~ritd~Af~ael~~--~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~----~P~kv~th~~~~l 301 (533)
T KOG2032|consen 228 SEKENGRITDIAFFAELKR--PKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASG----APDKVRTHKTTQL 301 (533)
T ss_pred hhcccchHHHHHHHHHHhC--cccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhcc----CcHHHHHhHHHHH
Confidence 4456778777666665543 33333 67888888888999999999999999988876543 3445567788999
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHHH-cchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhh
Q 000194 242 EATQDGLGRNAPVHSIHGSLLAVGELLR-NTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDR 315 (1880)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~al~~l~~ll~-~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~ 315 (1880)
+.+..||-++.+.++.+-++.+|..+++ ..+..+.+++-++.-.+-.+.++.++.+|.++..+.+.|+.++...
T Consensus 302 daii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~ 376 (533)
T KOG2032|consen 302 DAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGG 376 (533)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCC
Confidence 9999999887778899999999988888 4456677888888888888889999999999999999999988643
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.011 Score=74.41 Aligned_cols=223 Identities=19% Similarity=0.219 Sum_probs=161.2
Q ss_pred hcCCChhHHHHHHHhccC--CCCc-chhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHH
Q 000194 570 VADADVTVRHSIFSSLYG--NRGF-DDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLL 646 (1880)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~--~~~f-d~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l 646 (1880)
+.||.+-+|...+..+.. ..+. .+......++......+.|++.-|--.|+..+..|++..|..++|-+-. ++.
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e---~Y~ 812 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSE---EYL 812 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHH---HHH
Confidence 478889999988887741 0111 1112223466777778889888888889998888888888777665433 222
Q ss_pred HHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhh
Q 000194 647 TYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQY 726 (1880)
Q Consensus 647 ~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~ 726 (1880)
.. ..- ..++.|-...++++.++.+.|+.+..|...++..++...+++ +...+...+..+|.|..........+
T Consensus 813 s~-k~k-~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrep-----d~~~RaSS~a~lg~Lcq~~a~~vsd~ 885 (982)
T KOG4653|consen 813 SE-KKK-LQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREP-----DHEFRASSLANLGQLCQLLAFQVSDF 885 (982)
T ss_pred hc-ccC-CCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCc-----hHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence 21 111 113444455689999999999999999999999999999964 56677788888999888766666668
Q ss_pred HHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCC--cchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 727 ISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYN--EYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 727 ~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~--~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
+.++...++...+-..+.-+|.+|+.-+..+..++|....|.. ..-++...+....+.+.+..+|..+..++-.+-
T Consensus 886 ~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 886 FHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 8888888888877555678999999999999999998766643 112456666666666667788888887776653
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.23 Score=58.66 Aligned_cols=328 Identities=15% Similarity=0.123 Sum_probs=175.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCCCchhh-HHHHHHHHHH------HHHhhhChHHHHHHHHHH-------HHH-HHhhhcCC
Q 000194 17 GAGGGSLDALNRILADLCTHGNPKEG-ASLALRKHIE------EQARDLGGEAFSRFMDQL-------YDR-ISGLLESN 81 (1880)
Q Consensus 17 ~~~~~~~~~~~~l~~~l~s~~~~~~~-aa~~l~~~v~------~~~~~~~~~~~~~~~~~l-------~~~-i~~l~~s~ 81 (1880)
++.+++|.+|. -+||+++-.-+. |..-+..+++ +++.++++.+|..|--.| +.- |.-+....
T Consensus 43 ~~~~g~p~l~~---l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~ 119 (728)
T KOG4535|consen 43 TPELGSPSLMT---LTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAES 119 (728)
T ss_pred CCCCCCceeeE---EecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55566666553 466777543332 4344444443 344556666665553323 222 22344444
Q ss_pred ChhhhhhHHHHHhHhhccc-cCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCC--------------
Q 000194 82 DAAENLGALRAIDELIDVA-LGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAM-------------- 145 (1880)
Q Consensus 82 ~~~~r~~~i~ai~~Li~~~-~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~-------------- 145 (1880)
.+..-.-.+.++..|+.-. ... ..+.+.+|.+.++..+. ..|+.|+-.+.-.+|.++.+....
T Consensus 120 ~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~-~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~ 198 (728)
T KOG4535|consen 120 SSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIR-HKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSS 198 (728)
T ss_pred CchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhh-cCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccc
Confidence 4444555677777776542 222 24667889999999997 569999988888888887642211
Q ss_pred --------chhH-------------------------------------------HHHHHHHHHhhhcCCCcchhHHHHH
Q 000194 146 --------TADE-------------------------------------------VEFQVKMALDWLRGDRVEYRRFAAV 174 (1880)
Q Consensus 146 --------~~~~-------------------------------------------v~~~~~~~~~~l~~~~~~~~R~aA~ 174 (1880)
++|. .-..+.++.+.. ......|..+.
T Consensus 199 n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~--~~ps~~rle~~ 276 (728)
T KOG4535|consen 199 NSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGST--YEPSPMRLEAL 276 (728)
T ss_pred cccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCc--cCCchhHHHHH
Confidence 1111 001111111111 11234788899
Q ss_pred HHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchh--hHH------HHHHHHHHHH--
Q 000194 175 LILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR--WRV------QWYYRMFEAT-- 244 (1880)
Q Consensus 175 ~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~--~~~------~~~~~~l~~~-- 244 (1880)
++|..+|.+-+- ...|+.++...|-.++.|+.+.+..-++..+..+..-+.+++.. .+. -|....+..+
T Consensus 277 qvl~~~a~~~~~-~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~ 355 (728)
T KOG4535|consen 277 QVLTLLARYFSM-TQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPR 355 (728)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChh
Confidence 999988887443 35688899999999999999999988888777665444322211 011 1211110000
Q ss_pred --HhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHH-HHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH
Q 000194 245 --QDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAE-IVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL 321 (1880)
Q Consensus 245 --~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~-~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl 321 (1880)
-++.... -.-+.+.++..+.....+-+..--...+. .+.++-+|++..|+.+++.+++.+.-.-.-.....+.
T Consensus 356 ~~YDs~~~T----l~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv 431 (728)
T KOG4535|consen 356 ALYDSEHPT----LQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFV 431 (728)
T ss_pred hhhhhcCCC----chhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHH
Confidence 0011110 12233333333322111111111111222 3334446788889999988887655322211122234
Q ss_pred HHHHHHHHHhhcCC--CCcchHHHHHHHHHhhchhh
Q 000194 322 KICMNHILTVLRIP--AERDSGFIALGEMAGALDGE 355 (1880)
Q Consensus 322 ~~~~~~Ll~~L~~~--~~r~~a~~alg~la~~v~~~ 355 (1880)
......++..|.+. ..|.+++-++|+|..++-..
T Consensus 432 ~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~ 467 (728)
T KOG4535|consen 432 ADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVN 467 (728)
T ss_pred HHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcC
Confidence 45555555555432 35889999999998776443
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.93 E-value=1.2 Score=55.47 Aligned_cols=168 Identities=18% Similarity=0.200 Sum_probs=111.5
Q ss_pred HHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCch
Q 000194 602 SAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYI 681 (1880)
Q Consensus 602 ~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~ 681 (1880)
..|-..+.+....+|-.|++..+.|+...+. ...+++.....+..|... .|...|..|..+|..++.... .
T Consensus 332 ~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s--~davK~h~d~Ii~sLkte-rDvSirrravDLLY~mcD~~N------a 402 (938)
T KOG1077|consen 332 NQLGQFLSHRETNIRYLALESMCKLASSEFS--IDAVKKHQDTIINSLKTE-RDVSIRRRAVDLLYAMCDVSN------A 402 (938)
T ss_pred HHHHHHhhcccccchhhhHHHHHHHHhccch--HHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHhchhh------H
Confidence 3344556677888999999999999887543 355666666667777755 788899999999999986543 3
Q ss_pred HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhc
Q 000194 682 APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQST 761 (1880)
Q Consensus 682 ~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~ 761 (1880)
..|+.-|++.+..- ++.+++.+..-+..|++....+..=|++.++..+--+ .|-.+.+ .-.-+.+++.+.
T Consensus 403 k~IV~elLqYL~tA-----d~sireeivlKvAILaEKyAtDy~WyVdviLqLiria-gd~vsde----VW~RvvQiVvNn 472 (938)
T KOG1077|consen 403 KQIVAELLQYLETA-----DYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIA-GDYVSDE----VWYRVVQIVVNN 472 (938)
T ss_pred HHHHHHHHHHHhhc-----chHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHh-cccccHH----HHHHhheeEecc
Confidence 56777788887763 7888888888888899998888888888887765543 2332222 233344444433
Q ss_pred CcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHH
Q 000194 762 GYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKV 797 (1880)
Q Consensus 762 ~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~ 797 (1880)
.. +.+|. -+.+...|.. +.+.+..+|+
T Consensus 473 ed-lq~ya-----ak~~fe~Lq~---~a~hE~mVKv 499 (938)
T KOG1077|consen 473 ED-LQGYA-----AKRLFEYLQK---PACHENMVKV 499 (938)
T ss_pred hh-hhHHH-----HHHHHHHHhh---hHHHHHHHHh
Confidence 22 34443 2344445543 2444444554
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00062 Score=57.91 Aligned_cols=55 Identities=24% Similarity=0.324 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 000194 702 NGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1880)
Q Consensus 702 ~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l 757 (1880)
+.++.+++.+||.++...+..+.+|+++++|.++..|+|.+ ..+|.+|+++||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~-~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDD-DSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSS-HHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHhcC
Confidence 35788899999999888889999999999999999999875 48999999999964
|
... |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.5 Score=57.87 Aligned_cols=154 Identities=16% Similarity=0.243 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
.+..-.++++-|..|+++.|.+.-.+++...|... ...--.+-++=.+| +-.+|+...++-+.-
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a----------aa~nNLa~i~kqqg---nl~~Ai~~YkealrI--- 417 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA----------AAHNNLASIYKQQG---NLDDAIMCYKEALRI--- 417 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh----------hhhhhHHHHHHhcc---cHHHHHHHHHHHHhc---
Confidence 66777889999999999999988777777655321 11111233333455 357888888875431
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1880)
+...|..|.-+|.=.-++. ..+..++.|.+|++++|....|+..+|..
T Consensus 418 -------------------~P~fAda~~NmGnt~ke~g------~v~~A~q~y~rAI~~nPt~AeAhsNLasi------- 465 (966)
T KOG4626|consen 418 -------------------KPTFADALSNMGNTYKEMG------DVSAAIQCYTRAIQINPTFAEAHSNLASI------- 465 (966)
T ss_pred -------------------CchHHHHHHhcchHHHHhh------hHHHHHHHHHHHHhcCcHHHHHHhhHHHH-------
Confidence 2457888888888766653 46889999999999999998888887754
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHh---HHHHHHHHHhcC
Q 000194 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQD---ILRLLTLWFNHG 1780 (1880)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~---~~RlLtLwf~~g 1780 (1880)
+++. -.+..||..|-.++.+.+. ..+..+. .++.+-=|.|+.
T Consensus 466 ~kDs-------Gni~~AI~sY~~aLklkPD---fpdA~cNllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 466 YKDS-------GNIPEAIQSYRTALKLKPD---FPDAYCNLLHCLQIVCDWTDYD 510 (966)
T ss_pred hhcc-------CCcHHHHHHHHHHHccCCC---CchhhhHHHHHHHHHhcccchH
Confidence 3222 3677899999999998642 2223333 344444566654
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=96.92 E-value=3 Score=55.75 Aligned_cols=202 Identities=16% Similarity=0.128 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhccccc
Q 000194 921 WKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAE 1000 (1880)
Q Consensus 921 ~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~ 1000 (1880)
..|..+....|..+...+|.+-+++.+.+...-..+ + ....-++++.+++-.+++.+.+ +-+.+|.++......
T Consensus 755 l~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~---d-~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~- 828 (1549)
T KOG0392|consen 755 LFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGN---D-EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSI- 828 (1549)
T ss_pred HHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCC---c-chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccc-
Confidence 445556666676666666776666666655432111 0 1124567777777788888888 777777777766543
Q ss_pred ccCchhhHHHHHHHHHHH-hcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc--ccccchhHhHHHHHHHhh
Q 000194 1001 RCNDYTYVLDILHTLEVF-GGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR--VQVTGHISSLVHHLKLVL 1077 (1880)
Q Consensus 1001 ~~~~~~~~~~il~~l~~~-g~~~~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~--~~~~~~~~~ii~~l~~~l 1077 (1880)
...+...+..|+..+ .....+.+..++..++.+++......-|..|...+..+... ..+-+|...++.+|.+.+
T Consensus 829 ---~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~m 905 (1549)
T KOG0392|consen 829 ---HIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRM 905 (1549)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhccc
Confidence 333444455555443 33345666667777777776654455566677777777664 567899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccccccchh-HHHHHHHhCCCCchhHHHHHHHHhcC
Q 000194 1078 DGKNDELRKDAVDALCCLAHALGEDFTIFIP-SIHKLLLKHRLRHKEFEEIEGRLRRR 1134 (1880)
Q Consensus 1078 ~~~~~~l~~~al~~L~~l~~~~g~~f~~fip-~i~~~l~~~~~~~~~~~~~~~~~~~~ 1134 (1880)
++....+|.++-.++..++.-++-.-.++-| .+.+-|...+ +++.+.++.+.++
T Consensus 906 sd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~k---e~erkFLeqlldp 960 (1549)
T KOG0392|consen 906 SDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASK---EEERKFLEQLLDP 960 (1549)
T ss_pred ccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhH---HHHHHHHHHhcCc
Confidence 9888899999999999999888765555544 5666666542 3344445555443
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.78 Score=58.44 Aligned_cols=197 Identities=13% Similarity=0.116 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC
Q 000194 63 FSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG 142 (1880)
Q Consensus 63 ~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~ 142 (1880)
+.+....+..-+.+.+++.++-.|..+..+++.+..... +.. .-.-|.+.|..++. +.|+.|+..|..++..+.+..
T Consensus 115 v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~-~~~-~~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 115 VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP-DLV-EDSGLVDALKDLLS-DSNPMVVANALAALSEIHESH 191 (734)
T ss_pred ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh-hhc-cccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhC
Confidence 445566677778888999888899999999999966531 100 01236778888886 678899999999999888753
Q ss_pred -CCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 000194 143 -GAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRAC 221 (1880)
Q Consensus 143 -g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~ 221 (1880)
+.....+....+...++-+.+-..|+ -+.+|..+++..|+.= .-..++++.+..-|...++.|--.|...+-..
T Consensus 192 ~~~~~~~l~~~~~~~lL~al~ec~EW~----qi~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~ 266 (734)
T KOG1061|consen 192 PSVNLLELNPQLINKLLEALNECTEWG----QIFILDCLAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQL 266 (734)
T ss_pred CCCCcccccHHHHHHHHHHHHHhhhhh----HHHHHHHHHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHH
Confidence 23334444445555555444333332 3467888888888753 45667888888888888888877777777666
Q ss_pred HHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh
Q 000194 222 LRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE 273 (1880)
Q Consensus 222 ~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~ 273 (1880)
+..+.+ .....+.++-+.+...++.. + +..+.++.=++.++...++
T Consensus 267 ~~~~~~----~~~~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~ 312 (734)
T KOG1061|consen 267 VKYLKQ----VNELLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPE 312 (734)
T ss_pred HHHHHH----HHHHHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChH
Confidence 554432 33445666666666666654 2 7777777767666665443
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.027 Score=73.80 Aligned_cols=193 Identities=14% Similarity=0.154 Sum_probs=145.2
Q ss_pred HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchh
Q 000194 70 LYDRISGLLESNDAAENLGALRAIDELIDVALGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTAD 148 (1880)
Q Consensus 70 l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~ 148 (1880)
+...+..-+.+++|.+|..|+-.+...+.-..++ ......-+..++...+- +.+..|...|+.+++.|+...+.....
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~k-DaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLK-DANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 3444556677899999999999998887654311 23333434445555553 557889999999999999986666666
Q ss_pred HHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Q 000194 149 EVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKR 228 (1880)
Q Consensus 149 ~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r 228 (1880)
|+...++.+++.+.+ +....|.+++-++..++. ...+..+.+.|..++++.+|.+|......+..++..+..
T Consensus 333 ~~~~v~p~lld~lke-kk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~- 404 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKE-KKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP- 404 (815)
T ss_pred HHHhhcchHHHHhhh-ccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC-
Confidence 777777888877754 455688999999888887 346678899999999999999999999999988876542
Q ss_pred chhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh
Q 000194 229 ETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE 273 (1880)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~ 273 (1880)
......-...+.+.+..+..|.+ .++|.+|..+++.+.++.|+
T Consensus 405 -~~~~~~t~~~l~p~~~~~~~D~~-~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 405 -KTVEKETVKTLVPHLIKHINDTD-KDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred -cCcchhhHHHHhHHHhhhccCCc-HHHHHHHHHHHHHHHHHhhH
Confidence 11233456788888888887774 78999999999999886664
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.011 Score=75.10 Aligned_cols=138 Identities=17% Similarity=0.212 Sum_probs=113.7
Q ss_pred CChHhHHHHHHHHHHHHHhCc-ccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHH
Q 000194 654 ADNKCREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMP 732 (1880)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p 732 (1880)
.+...|-.-..+|.+++.+.| +.+.|.++.+++.+++.+.-+ +..++...+.++..+....+.-+..|++.++|
T Consensus 879 ~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~-----D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp 953 (1030)
T KOG1967|consen 879 APGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMP-----DVIVRVSTLRTIPMLLTESETLQTEHLSTLVP 953 (1030)
T ss_pred CCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCC-----ccchhhhHhhhhhHHHHhccccchHHHhHHHH
Confidence 345567788899999999887 678899999999999999864 66777788889998888888899999999999
Q ss_pred HHHHHHhcCCc--hhhHHHHHHHHHHHHhhcCcc-cccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000194 733 LIVEALLDGAA--VTKREVAVSTLGQVVQSTGYV-ITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1880)
Q Consensus 733 ~l~~~l~d~~~--~~~r~~Al~~Lg~l~~~~~~~-i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg 799 (1880)
.++..=.|.++ ..+|+.|+++|+.+.+..... +.||. |.++..+...|.+. -+.||.+|.++=+
T Consensus 954 ~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr--~~Vl~al~k~LdDk-KRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 954 YLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFR--PLVLRALIKILDDK-KRLVRKEAVDTRQ 1020 (1030)
T ss_pred HHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccccc--HHHHHHhhhccCcH-HHHHHHHHHHHhh
Confidence 99987666543 569999999999999866543 56665 78999999999644 5789999987743
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.27 Score=62.30 Aligned_cols=197 Identities=18% Similarity=0.158 Sum_probs=117.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHhccC------CCCcchhhccHhhHHHHHHHhCCC-CHhHHHHHHHHHHhhhcCCccccc
Q 000194 563 EKLLIAAVADADVTVRHSIFSSLYG------NRGFDDFLAQADCLSAIFAALNDE-DFDVREYAISVAGRLSEKNPAYVL 635 (1880)
Q Consensus 563 ~~Ll~~~~~d~~~~vR~~~l~~l~~------~~~fd~~L~~~~~l~~L~~~l~D~-~~~VR~~a~~~l~~l~~~~p~~v~ 635 (1880)
.+|++....+.|+.....++.-|.+ ....+.+ .-..+++.|...++++ ++++...|+.++.-|++..|..+-
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~f-pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGF-PVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccc-cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 4556555566677776665554421 1111111 1124688888889887 689999999999999999996421
Q ss_pred HHH----HHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHH
Q 000194 636 PAL----RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVT 711 (1880)
Q Consensus 636 p~l----~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~ 711 (1880)
-.. -.++.+-|..+++- ...|+++.+|-.|-+..+..+..- .-+..++..+.- ..-.+...++..
T Consensus 249 ~vV~~~aIPvl~~kL~~Ieyi----DvAEQ~LqALE~iSR~H~~AiL~A--G~l~a~LsylDF-----FSi~aQR~Alai 317 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYI----DVAEQSLQALEKISRRHPKAILQA--GALSAVLSYLDF-----FSIHAQRVALAI 317 (1051)
T ss_pred eeecccchHHHHHhhhhhhhh----HHHHHHHHHHHHHHhhccHHHHhc--ccHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 111 12233334445554 566788888877777665443221 011122232221 122233344444
Q ss_pred HHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHH
Q 000194 712 VGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLL 779 (1880)
Q Consensus 712 l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll 779 (1880)
...++.....+--.|+-+.+|++...|+.. +...-+.++.++..++... .++|+.++.|.
T Consensus 318 aaN~Cksi~sd~f~~v~ealPlL~~lLs~~-D~k~ies~~ic~~ri~d~f-------~h~~~kLdql~ 377 (1051)
T KOG0168|consen 318 AANCCKSIRSDEFHFVMEALPLLTPLLSYQ-DKKPIESVCICLTRIADGF-------QHGPDKLDQLC 377 (1051)
T ss_pred HHHHHhcCCCccchHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHhc-------ccChHHHHHHh
Confidence 555666666666678889999999999865 3445577788888887654 34567777665
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0095 Score=56.54 Aligned_cols=87 Identities=32% Similarity=0.465 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHH
Q 000194 563 EKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHL 642 (1880)
Q Consensus 563 ~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l 642 (1880)
+.|+.....|+++.+|..++.+|+. + ..++.++.|...++|+++.||..|+..||++.. | ...|.+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~---~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--~-~~~~~L---- 67 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGE---L----GDPEAIPALIELLKDEDPMVRRAAARALGRIGD--P-EAIPAL---- 67 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHC---C----THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--H-HTHHHH----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH---c----CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--H-HHHHHH----
Confidence 4555655589999999999999962 2 235789999999999999999999999998752 1 122222
Q ss_pred HHHHHHHhcCCCChHhHHHHHHHHH
Q 000194 643 IQLLTYLEQSSADNKCREESAKLLG 667 (1880)
Q Consensus 643 ~~~l~~l~~~~~~~~~r~~a~~~L~ 667 (1880)
...+.++ .+...|..|+..||
T Consensus 68 ---~~~l~~~-~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 68 ---IKLLQDD-DDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHHTC--SSHHHHHHHHHHHH
T ss_pred ---HHHHcCC-CcHHHHHHHHhhcC
Confidence 2234454 55666888888775
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.8 Score=57.48 Aligned_cols=117 Identities=14% Similarity=0.032 Sum_probs=80.8
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhh---------hhhcH
Q 000194 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELD---------VQLKE 1361 (1880)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~---------~~~~~ 1361 (1880)
.+..+..++.|.+|+.+++...... ++.....-.|..+|...|+.+.+.-+++....... .....
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 3666778888889998887766432 23345667788999999999988877764332211 11123
Q ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhh
Q 000194 1362 SWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKE 1416 (1880)
Q Consensus 1362 ~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~ 1416 (1880)
..|.+.|++++|+..|++.++.. +.. ......+..++...|+|+.-.+..+.
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~--~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEG--DFA-EGALQQLLEIYQQEKDWQKAIDVAER 166 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCC--cch-HHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 45788899999999999887532 221 34566778888999999877666554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=2.3 Score=57.81 Aligned_cols=330 Identities=14% Similarity=0.062 Sum_probs=165.4
Q ss_pred CCCCCHHHHHHHHHhccchhhhhhhccchhcccccc-----------------------------c-CCCCcHHHHHHHH
Q 000194 1283 PLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSN-----------------------------R-MDANPVAVVEALI 1332 (1880)
Q Consensus 1283 ~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~-----------------------------~-~~~~~~~~~e~L~ 1332 (1880)
+-.+.+..+.....++|.+..|+.+++.-....... + .-.....+...|+
T Consensus 187 ~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li 266 (697)
T PLN03081 187 RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266 (697)
T ss_pred CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHH
Confidence 334667788888888888888887765432211000 0 0001122446789
Q ss_pred HHHhhcCChHHHhHHHHHHhchh--hhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHH
Q 000194 1333 HINNQLHQHEAAVGILTYAQKEL--DVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEEL 1410 (1880)
Q Consensus 1333 ~iy~~L~~~D~~~Gi~~~~~~~~--~~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l 1410 (1880)
..|.+.|+.|.|..++......- ..+....-|-+.|++++|++.|++-....-.|+. .....+++++.++|.++..
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~--~t~~~ll~a~~~~g~~~~a 344 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ--FTFSIMIRIFSRLALLEHA 344 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhccchHHH
Confidence 99999999999998887533210 1111223488899999999999876544333432 3456788888899988755
Q ss_pred HHHHhhhcCC-CChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHH---H
Q 000194 1411 NNLCKEYWTP-AEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLL---V 1486 (1880)
Q Consensus 1411 ~~~~~~~~~~-~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~---i 1486 (1880)
.+........ ..++ ..+......+..+.|+++...+..+.+...+...|..++..+. ..+..-+|+.- +
T Consensus 345 ~~i~~~m~~~g~~~d--~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~-----~~G~~~~A~~lf~~M 417 (697)
T PLN03081 345 KQAHAGLIRTGFPLD--IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG-----NHGRGTKAVEMFERM 417 (697)
T ss_pred HHHHHHHHHhCCCCC--eeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH-----HcCCHHHHHHHHHHH
Confidence 5443321100 0011 1112244567778899999888877775432222211111100 00111111111 1
Q ss_pred H-hcCh--hhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCC-CCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhh
Q 000194 1487 R-RGKV--LESYERAYSNMVRVQQLSELEEVIDYCTLPVG-NPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALV 1562 (1880)
Q Consensus 1487 ~-~~~~--~esy~ray~~l~~lq~L~ELeE~i~~~~~~~~-~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~v 1562 (1880)
. .|.. ...|........+...+.|-.++.+......+ .|. ......+.+... -...++.=..++ +..-
T Consensus 418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-~~~y~~li~~l~-----r~G~~~eA~~~~--~~~~ 489 (697)
T PLN03081 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-AMHYACMIELLG-----REGLLDEAYAMI--RRAP 489 (697)
T ss_pred HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-ccchHhHHHHHH-----hcCCHHHHHHHH--HHCC
Confidence 1 1111 11122221222222223332222221110000 000 000111111111 112233223332 2221
Q ss_pred cCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000194 1563 LPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1880)
Q Consensus 1563 l~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~ 1642 (1880)
+ ..+..+|-.+.+.|+++|+++.|..+..++.+.+|.. .......+..+-..| +..+|.+.++.+
T Consensus 490 ~--~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~----------~~~y~~L~~~y~~~G---~~~~A~~v~~~m 554 (697)
T PLN03081 490 F--KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK----------LNNYVVLLNLYNSSG---RQAEAAKVVETL 554 (697)
T ss_pred C--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC----------CcchHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 2 2357789999999999999999999999988776531 111122334444455 467898888876
Q ss_pred HH
Q 000194 1643 AM 1644 (1880)
Q Consensus 1643 ~~ 1644 (1880)
..
T Consensus 555 ~~ 556 (697)
T PLN03081 555 KR 556 (697)
T ss_pred HH
Confidence 54
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.059 Score=66.01 Aligned_cols=184 Identities=28% Similarity=0.370 Sum_probs=121.4
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHH
Q 000194 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1880)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1880)
.+.++++.+|..+...++. ....+.++.+...+.|+++.||..|...||.+..- ...|.+ +..
T Consensus 51 ~l~~~~~~vr~~aa~~l~~-------~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~---~a~~~l-------i~~ 113 (335)
T COG1413 51 LLEDEDLLVRLSAAVALGE-------LGSEEAVPLLRELLSDEDPRVRDAAADALGELGDP---EAVPPL-------VEL 113 (335)
T ss_pred HHcCCCHHHHHHHHHHHhh-------hchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh---hHHHHH-------HHH
Confidence 4577899999999988852 12346799999999999999999999988875532 122322 333
Q ss_pred HhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCC-------CCCChhHHHHHHHHHHHHHHhcCC
Q 000194 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTG-------INANNGIISGVLVTVGDLARVGGF 721 (1880)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~-------~~~~~~v~~~~~~~l~~La~~~g~ 721 (1880)
+..+ .+..+|..+++.|+.+-.... +..++..+.+... ......++..+..+++.+..
T Consensus 114 l~~d-~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~---- 178 (335)
T COG1413 114 LEND-ENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD---- 178 (335)
T ss_pred HHcC-CcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC----
Confidence 3434 678889999999888754322 3334444444310 00112344455555544322
Q ss_pred chhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000194 722 GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 722 ~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~l 801 (1880)
+...+.+...+.+. +..+|..|..+||.+.... ..+...+...+.+ .++.+|..++..+|.+
T Consensus 179 ------~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~-~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 179 ------PEAIPLLIELLEDE-DADVRRAAASALGQLGSEN----------VEAADLLVKALSD-ESLEVRKAALLALGEI 240 (335)
T ss_pred ------hhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcC-CCHHHHHHHHHHhccc
Confidence 34566777778776 4579999999999875432 2455666666654 4899999999998887
Q ss_pred c
Q 000194 802 G 802 (1880)
Q Consensus 802 g 802 (1880)
|
T Consensus 241 ~ 241 (335)
T COG1413 241 G 241 (335)
T ss_pred C
Confidence 6
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.025 Score=71.89 Aligned_cols=153 Identities=14% Similarity=0.140 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC
Q 000194 64 SRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG 142 (1880)
Q Consensus 64 ~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~ 142 (1880)
++|+.++++.+.+.++......|--=+.|+...+.--+-+ --..+..+.+.|.+.+. ..|..|+-.+..++.-+....
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls-~~D~~v~vstl~~i~~~l~~~ 940 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALS-MPDVIVRVSTLRTIPMLLTES 940 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcC-CCccchhhhHhhhhhHHHHhc
Confidence 5778888888777777555556665666777666421111 11233445566666664 578999888999998888878
Q ss_pred CCCchhHHHHHHHHHHhhhcCCCc--chhHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHHhcCCchhHHHHHHHH
Q 000194 143 GAMTADEVEFQVKMALDWLRGDRV--EYRRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEA 217 (1880)
Q Consensus 143 g~~~~~~v~~~~~~~~~~l~~~~~--~~~R~aA~~~l~~la~~~p~-~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~a 217 (1880)
+++..+++...++..+..=.+.++ -..|..|+..+..|.+..|. .+.+|-+.++.+|.+.|.||+-.||+.|.++
T Consensus 941 ~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 941 ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 899999999999988765443332 57999999999999998775 8999999999999999999999999998874
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.2 Score=59.58 Aligned_cols=202 Identities=14% Similarity=0.056 Sum_probs=130.7
Q ss_pred HHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh--cCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Q 000194 149 EVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN--ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIE 226 (1880)
Q Consensus 149 ~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~--~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~ 226 (1880)
-++..+..+++.+.+ ++...|.+|+..+..+..+ .+..+..+..++++.+.+.++-....-+..|+.+++-+.-.+.
T Consensus 40 ~~e~~L~~~Id~l~e-K~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg 118 (309)
T PF05004_consen 40 DLEDKLKEAIDLLTE-KSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLG 118 (309)
T ss_pred HHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcC
Confidence 344557777777754 4467899999888776544 6678888999999999999987666555556666554322211
Q ss_pred hhchhhHHHHHHHHHHHHHhhccCCCC-hhHHHHHHHHHHHHHHcchhhhHHH--HHHHHHHHHHHh--h-c--------
Q 000194 227 KRETRWRVQWYYRMFEATQDGLGRNAP-VHSIHGSLLAVGELLRNTGEFMMSR--YREVAEIVLRYL--E-H-------- 292 (1880)
Q Consensus 227 ~r~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~al~~l~~ll~~~~~~~~~~--~~~i~~~ll~~~--~-~-------- 292 (1880)
.......+|..+.|.+...+.+... ...|.+++.+|+-+...++...... .-+.++.++... + +
T Consensus 119 --~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 119 --AGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred --CCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccC
Confidence 1123456777777777777766532 3455666667777666322211111 113344332211 1 1
Q ss_pred -chhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhch
Q 000194 293 -RDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALD 353 (1880)
Q Consensus 293 -~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~ 353 (1880)
.++.|..+++.+++-|+...+..-+..++...++.|..+|.... .|.+|.++|+.+-+...
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 23578999999999998777653334577889999999998764 58899999998766554
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.12 Score=65.41 Aligned_cols=130 Identities=23% Similarity=0.279 Sum_probs=77.4
Q ss_pred chhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHH
Q 000194 479 SAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI 558 (1880)
Q Consensus 479 ~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1880)
....+.|++++|+..+. .+.+++.+.+...+.++++.||+.|+..+.++......-+. .
T Consensus 100 p~iR~lAlrtm~~l~v~--~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~---------------~---- 158 (734)
T KOG1061|consen 100 PLIRALALRTMGCLRVD--KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVE---------------D---- 158 (734)
T ss_pred HHHHHHHhhceeeEeeh--HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcc---------------c----
Confidence 33568999999998663 24456667777888999999999999988888754432110 0
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHhccC----CCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccc
Q 000194 559 EELVEKLLIAAVADADVTVRHSIFSSLYG----NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY 633 (1880)
Q Consensus 559 ~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~----~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~ 633 (1880)
..+++. +...+.|.+|.|...++.+|.+ +..-....-.+.++..++.++++.+ --.-+.++..++.+.|..
T Consensus 159 ~gl~~~-L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~---EW~qi~IL~~l~~y~p~d 233 (734)
T KOG1061|consen 159 SGLVDA-LKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECT---EWGQIFILDCLAEYVPKD 233 (734)
T ss_pred cchhHH-HHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhh---hhhHHHHHHHHHhcCCCC
Confidence 111111 2223569999999988888852 1110111112334555555555422 223445566666666653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=3.3 Score=55.58 Aligned_cols=333 Identities=15% Similarity=0.071 Sum_probs=186.1
Q ss_pred CHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcH
Q 000194 1287 DIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKE 1361 (1880)
Q Consensus 1287 ~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~ 1361 (1880)
.+.+++....+.|.+..|+-.++...... ++.......|.-.....|+.|.+...++..... + . .....
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la 117 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVA 117 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34567778888899989988887766432 344567777778888899999998888754321 1 1 12234
Q ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhHHHHHHHHHHH
Q 000194 1362 SWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW--TPAEPAARLEMAPMAANAAWN 1439 (1880)
Q Consensus 1362 ~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~~~~~a~aaw~ 1439 (1880)
..+.+.|++++|+..|++.+...++. .+....+.+++..+|+++.-....+... .+...... ....++..
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~P~~---~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~-----~~~~~l~~ 189 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAFSGN---SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMI-----ATCLSFLN 189 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHH-----HHHHHHHH
Confidence 45788999999999999988654332 3556778888999999987665444321 11112111 11224667
Q ss_pred cCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhc
Q 000194 1440 MGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCT 1519 (1880)
Q Consensus 1440 l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~ELeE~i~~~~ 1519 (1880)
.|+++.-......+-..... .........+......++ |..| +..++.+++.
T Consensus 190 ~g~~~eA~~~~~~~l~~~~~-------------~~~~~~~~l~~~l~~~g~----~~eA---------~~~~~~al~~-- 241 (656)
T PRK15174 190 KSRLPEDHDLARALLPFFAL-------------ERQESAGLAVDTLCAVGK----YQEA---------IQTGESALAR-- 241 (656)
T ss_pred cCCHHHHHHHHHHHHhcCCC-------------cchhHHHHHHHHHHHCCC----HHHH---------HHHHHHHHhc--
Confidence 88888776655433110000 000000000000011111 1111 1111112111
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHhhccCCHHH-H-HHHHHHHHhh-cCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 000194 1520 LPVGNPVAEGRRAIIRNMWTERIQGTKRNVEV-W-QALLAVRALV-LPPTEDVETWLKFASLCRKSGRISQARSTLVKLL 1596 (1880)
Q Consensus 1520 ~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~-w-~~iL~~R~~v-l~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~ 1596 (1880)
.+.. ......+-..... ..+++. . +-+-..++.+ +.| ++...|..++.+..+.|+++.|...+.++.
T Consensus 242 ~p~~----~~~~~~Lg~~l~~-----~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 242 GLDG----AALRRSLGLAYYQ-----SGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred CCCC----HHHHHHHHHHHHH-----cCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1110 1111111111111 111111 0 0111222222 334 468899999999999999999999999988
Q ss_pred cCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHH
Q 000194 1597 QYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYL 1676 (1880)
Q Consensus 1597 ~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~ 1676 (1880)
..+|. .+.+....+..++..|+ ..+|+..++..+...... .......+.++.
T Consensus 312 ~l~P~----------~~~a~~~La~~l~~~G~---~~eA~~~l~~al~~~P~~---------------~~~~~~~a~al~ 363 (656)
T PRK15174 312 ATHPD----------LPYVRAMYARALRQVGQ---YTAASDEFVQLAREKGVT---------------SKWNRYAAAALL 363 (656)
T ss_pred HhCCC----------CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCccc---------------hHHHHHHHHHHH
Confidence 77652 46777788999999995 689999998776431100 000011233333
Q ss_pred HHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch
Q 000194 1677 KLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG 1712 (1880)
Q Consensus 1677 ~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~ 1712 (1880)
..| ..++....|..+++.+|+..
T Consensus 364 ~~G-------------~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 364 QAG-------------KTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HCC-------------CHHHHHHHHHHHHHhChhhc
Confidence 333 45788888999988888643
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.028 Score=60.27 Aligned_cols=143 Identities=21% Similarity=0.157 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHhh-cCccchhchHHHHHHH------------HHHhcCCchhHHHHHHHHHHHHHHHHhh-------h
Q 000194 169 RRFAAVLILKEMAEN-ASTVFNVHVAEFVDAI------------WVALRDPTLAVRERAVEALRACLRVIEK-------R 228 (1880)
Q Consensus 169 ~R~aA~~~l~~la~~-~p~~l~~~l~~i~~~i------------~~~l~D~~~~VR~aA~~al~~~~~~i~~-------r 228 (1880)
.|.+|+.+|..++.. -|+.|+.|-+.++|-- .-.++||+++||.+|+.++..+++-.+. +
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 589999999999999 6778888888888643 3456899999999999999988764322 1
Q ss_pred chh---------hHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch--hhhHHHHHHHHHHHHHHhhcchhHH
Q 000194 229 ETR---------WRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG--EFMMSRYREVAEIVLRYLEHRDRLV 297 (1880)
Q Consensus 229 ~~~---------~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~--~~~~~~~~~i~~~ll~~~~~~~~~V 297 (1880)
... .-..++..+...+...+.........-..+.++..|+.+++ ..=...+.+++..+..+..|+++.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 100 01122333444444455443322334444556666666443 2222345566677777778888888
Q ss_pred HHHHHHHhHhHhhh
Q 000194 298 RLSITSLLPRIAHF 311 (1880)
Q Consensus 298 r~~~~~~i~~la~~ 311 (1880)
|-+++.+++.+...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 88888888877643
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.62 E-value=3.6 Score=52.51 Aligned_cols=144 Identities=11% Similarity=0.146 Sum_probs=70.4
Q ss_pred HHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhhhhhHHHHHH
Q 000194 288 RYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHL 367 (1880)
Q Consensus 288 ~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l 367 (1880)
.+++++....|-+++.+|-.+|--.|... ..+=..|-. |-....|..|.-++..+-....+ .-++.+|..|
T Consensus 289 ~flssp~~~lRfaAvRtLnkvAm~~P~~v-----~~cN~elE~-lItd~NrsIat~AITtLLKTG~e---~sv~rLm~qI 359 (865)
T KOG1078|consen 289 LFLSSPKVALRFAAVRTLNKVAMKHPQAV-----TVCNLDLES-LITDSNRSIATLAITTLLKTGTE---SSVDRLMKQI 359 (865)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHhCCccc-----cccchhHHh-hhcccccchhHHHHHHHHHhcch---hHHHHHHHHH
Confidence 34567777888888888888775444321 000011111 11234567777777666433322 2234444444
Q ss_pred HHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC-C--CHHHHHHHHHHHHhCCCChHHHHHHHH
Q 000194 368 REAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAG-L--STTLVDALEQITVSIPSLLPTIQDRLL 440 (1880)
Q Consensus 368 ~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~-l--s~~l~~~l~~i~~~~p~l~~~i~~~ll 440 (1880)
-....+-..+-..-+.+++..++..+...-.-++.-+-..|.+.| . ..+..+++..+++..|.-+......|.
T Consensus 360 ~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LC 435 (865)
T KOG1078|consen 360 SSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLC 435 (865)
T ss_pred HHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 333322222222345666666666665443334443333344433 2 234556666666666654444333333
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.011 Score=56.05 Aligned_cols=88 Identities=24% Similarity=0.335 Sum_probs=68.0
Q ss_pred HHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcc
Q 000194 685 HKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV 764 (1880)
Q Consensus 685 l~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~ 764 (1880)
++.|+..+.++ .++.++..++.++|.+. -++++|.+++.+.|. +..+|..|+.+||.+-
T Consensus 1 i~~L~~~l~~~----~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~------ 59 (88)
T PF13646_consen 1 IPALLQLLQND----PDPQVRAEAARALGELG----------DPEAIPALIELLKDE-DPMVRRAAARALGRIG------ 59 (88)
T ss_dssp HHHHHHHHHTS----SSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH------
T ss_pred CHHHHHHHhcC----CCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC------
Confidence 35667777332 38899999988888432 237899999999875 6889999999999762
Q ss_pred cccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000194 765 ITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1880)
Q Consensus 765 i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg 799 (1880)
-|+.++.|...+.++.+..+|.+++.+||
T Consensus 60 ------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 15678889999988778889999999886
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=8 Score=54.18 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQW-SLGEDLKRKEAFARLQTLAM 1644 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw-~~g~~~~~~~Al~~L~~~~~ 1644 (1880)
.+..+|..++..+.+.|+++.|...+.++..... .+..+.|..+-..+ ..| +..+|.+.+..+.+
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi----------~Pd~~Ty~sLL~a~~k~G---~le~A~~l~~~M~k 782 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGL----------CPNTITYSILLVASERKD---DADVGLDLLSQAKE 782 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----------CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH
Confidence 4578899999999999999999999988764321 12233333333333 334 36788888887764
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.023 Score=60.31 Aligned_cols=152 Identities=15% Similarity=0.236 Sum_probs=97.0
Q ss_pred chhhccHhhHHHHHHHhC-CCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHH--
Q 000194 592 DDFLAQADCLSAIFAALN-DEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGC-- 668 (1880)
Q Consensus 592 d~~L~~~~~l~~L~~~l~-D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~-- 668 (1880)
+||..-|++++.|+..++ +.+..+|..+++++|-|+...| +..+.+......- .. .......-..
T Consensus 3 ~PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP-----~~~k~~~~~~~~~-----~~--~~~~~~~~~~~l 70 (160)
T PF11865_consen 3 DPYLDYPELLDILLNILKTEQSQSIRREALRVLGILGALDP-----YKHKSIQKSLDSK-----SS--ENSNDESTDISL 70 (160)
T ss_pred chHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCc-----HHHhcccccCCcc-----cc--ccccccchhhHH
Confidence 466767888999988876 4579999999999999998775 3333211111100 00 0000001111
Q ss_pred HHHhCcccccCch-HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhH
Q 000194 669 LIRNCERLIRPYI-APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKR 747 (1880)
Q Consensus 669 l~~~~~~~~~py~-~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r 747 (1880)
+..........|. .-.+..|+..++|++ ..+-...++.++-.+....|....||+++++|.++..++... ...|
T Consensus 71 ~~~~~~~~~ee~y~~vvi~~L~~iL~D~s----Ls~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~-~~~~ 145 (160)
T PF11865_consen 71 PMMGISPSSEEYYPTVVINALMRILRDPS----LSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCP-DSLR 145 (160)
T ss_pred hhccCCCchHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCC-HHHH
Confidence 1111111222333 346778888888863 344445667777777777888889999999999999999654 3788
Q ss_pred HHHHHHHHHHHhh
Q 000194 748 EVAVSTLGQVVQS 760 (1880)
Q Consensus 748 ~~Al~~Lg~l~~~ 760 (1880)
+.-+.-|+.++..
T Consensus 146 e~~~~qL~~lv~i 158 (160)
T PF11865_consen 146 EFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887653
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.38 E-value=1.7 Score=54.77 Aligned_cols=142 Identities=18% Similarity=0.219 Sum_probs=77.2
Q ss_pred hhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHh--cCCChhHH
Q 000194 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAV--ADADVTVR 578 (1880)
Q Consensus 501 ~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~--~d~~~~vR 578 (1880)
.++.+ +++.++.++-+||+-+..-...++.. + ...+++..+-..+....- .|..-..|
T Consensus 317 ~l~mD-vLrvLss~dldvr~Ktldi~ldLvss-------------r------Nvediv~~Lkke~~kT~~~e~d~~~~yR 376 (948)
T KOG1058|consen 317 GLIMD-VLRVLSSPDLDVRSKTLDIALDLVSS-------------R------NVEDIVQFLKKEVMKTHNEESDDNGKYR 376 (948)
T ss_pred HHHHH-HHHHcCcccccHHHHHHHHHHhhhhh-------------c------cHHHHHHHHHHHHHhccccccccchHHH
Confidence 33433 35788888999997654433333311 1 122333322222222211 22334568
Q ss_pred HHHHHhccCC-CCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHH----HHHHHhcCC
Q 000194 579 HSIFSSLYGN-RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQ----LLTYLEQSS 653 (1880)
Q Consensus 579 ~~~l~~l~~~-~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~----~l~~l~~~~ 653 (1880)
...++.+..| ..| +..+ ..+++.++..+.|.+..--..++..+....+.+| .||..++. .+..++.
T Consensus 377 qlLiktih~cav~F-p~~a-atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p-----~Lr~~ii~~l~~~~~~irS-- 447 (948)
T KOG1058|consen 377 QLLIKTIHACAVKF-PEVA-ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP-----NLRASIIEKLLETFPQIRS-- 447 (948)
T ss_pred HHHHHHHHHHhhcC-hHHH-HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc-----hHHHHHHHHHHHhhhhhcc--
Confidence 8787777533 233 2222 3578999999999988766667777777666664 45543333 2333332
Q ss_pred CChHhHHHHHHHHHHHHHhC
Q 000194 654 ADNKCREESAKLLGCLIRNC 673 (1880)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~ 673 (1880)
++.-+-|+|.+|.-++..
T Consensus 448 --~ki~rgalwi~GeYce~~ 465 (948)
T KOG1058|consen 448 --SKICRGALWILGEYCEGL 465 (948)
T ss_pred --cccchhHHHHHHHHHhhh
Confidence 334446778877766543
|
|
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.36 E-value=5.6 Score=51.61 Aligned_cols=159 Identities=12% Similarity=0.180 Sum_probs=124.1
Q ss_pred CCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh-hcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHH
Q 000194 250 RNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL-EHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHI 328 (1880)
Q Consensus 250 ~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~-~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~L 328 (1880)
+++.|....+.+..+.++++..++--.+.+...++...+.. +..++..-.++..+||.++.|-.++- -|++..+|.|
T Consensus 477 ~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P--~~ln~sl~~L 554 (982)
T KOG2022|consen 477 DPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP--MYLNPSLPLL 554 (982)
T ss_pred CchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC--cccCchHHHH
Confidence 33348888999999999998766555555555555444322 22477788899999999998866542 3889999999
Q ss_pred HHhhcCCCCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCC--CchHHHHHHHHHHHhCC-CchHHHHHHH
Q 000194 329 LTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP--SLEALACVGNIARAMGP-VMEPHVRGLL 405 (1880)
Q Consensus 329 l~~L~~~~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~--~~~a~~~l~~la~~~g~-~~~~~l~~ll 405 (1880)
+..|.+.+.-..+...+..+++....++.||.+.++....+.+...+.+. +..++.|+|.+..+..+ ...+|+..++
T Consensus 555 ~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~li 634 (982)
T KOG2022|consen 555 FQGLHNSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLI 634 (982)
T ss_pred HHHhcCchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHH
Confidence 99998877777888889999999999999999999999999886543332 46789999999998875 4567888888
Q ss_pred HHHHh
Q 000194 406 DIMFS 410 (1880)
Q Consensus 406 ~~l~~ 410 (1880)
.++++
T Consensus 635 n~il~ 639 (982)
T KOG2022|consen 635 NPILS 639 (982)
T ss_pred HHHHH
Confidence 88774
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=7.4 Score=54.51 Aligned_cols=462 Identities=13% Similarity=0.085 Sum_probs=228.0
Q ss_pred CCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch--hhhhhcHHH
Q 000194 1286 IDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE--LDVQLKESW 1363 (1880)
Q Consensus 1286 i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~--~~~~~~~~~ 1363 (1880)
+.+..+..++.+.+....|.-..+.-.... . .....+...|+..|.+.|+.|.+..++...... ...+.....
T Consensus 289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g----~-~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~ 363 (857)
T PLN03077 289 MTITSVISACELLGDERLGREMHGYVVKTG----F-AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363 (857)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhC----C-ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHH
Confidence 445556666666666555543333222111 1 123467789999999999999999998854321 011122234
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCC-CChHHHHhHHHHHHHHHHHcCC
Q 000194 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTP-AEPAARLEMAPMAANAAWNMGE 1442 (1880)
Q Consensus 1364 ~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~-~~~~~~~~~~~~~a~aaw~l~~ 1442 (1880)
|-+.|++++|++.|++-....-.|+. ......+..+.++|+++...+........ ..+. ..+......+..+.|+
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~--~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~--~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDE--ITIASVLSACACLGDLDVGVKLHELAERKGLISY--VVVANALIEMYSKCKC 439 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCc--eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHcCC
Confidence 88999999999999875544333432 24567788888899887665544322110 0111 1222344567888999
Q ss_pred hhhHHHHHhhcCCCCcchhhccccccc-cCCCCCchHHHHHHHHHHhcCh--hhhHHHHHHHHHHhHhhhhHHHHHHhhc
Q 000194 1443 WDQMAEYVSRLDDGDESKLRGLGNTAA-NGDGSSNGTFFRAVLLVRRGKV--LESYERAYSNMVRVQQLSELEEVIDYCT 1519 (1880)
Q Consensus 1443 Wd~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~f~~a~~~i~~~~~--~esy~ray~~l~~lq~L~ELeE~i~~~~ 1519 (1880)
++...+..+.+...+...|..+...+. .+.....-.+|+.+. .+.. .-.|........++-.+.+-.++..+..
T Consensus 440 ~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~---~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 440 IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML---LTLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred HHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH---hCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 999988888776543222221111110 000000001122211 1111 1123332233333333444444433221
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 000194 1520 LPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYD 1599 (1880)
Q Consensus 1520 ~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~ 1599 (1880)
.. +-.........+.+.+.+ ..+++.-..++.- + ..|..+|--++..+-++|+.+.|...+.++....
T Consensus 517 ~~-g~~~~~~~~naLi~~y~k-----~G~~~~A~~~f~~---~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g 584 (857)
T PLN03077 517 RT-GIGFDGFLPNALLDLYVR-----CGRMNYAWNQFNS---H---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584 (857)
T ss_pred Hh-CCCccceechHHHHHHHH-----cCCHHHHHHHHHh---c---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 10 000000001123333322 1233333333221 1 3568899999999999999999999998876432
Q ss_pred CCCCcccccCCCChHHHHH-HHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHH
Q 000194 1600 PETSHENVRYHGPPQVMYA-YLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKL 1678 (1880)
Q Consensus 1600 ~~~~~~~~~~~~~~~v~~~-~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~l 1678 (1880)
. .| ..+.+- .+.-.-+.| ...+|.+.++.+..+....++ .+.-..+..+|.+.
T Consensus 585 ~--~P--------d~~T~~~ll~a~~~~g---~v~ea~~~f~~M~~~~gi~P~-------------~~~y~~lv~~l~r~ 638 (857)
T PLN03077 585 V--NP--------DEVTFISLLCACSRSG---MVTQGLEYFHSMEEKYSITPN-------------LKHYACVVDLLGRA 638 (857)
T ss_pred C--CC--------CcccHHHHHHHHhhcC---hHHHHHHHHHHHHHHhCCCCc-------------hHHHHHHHHHHHhC
Confidence 1 11 122222 223333445 467899999887754332111 00111122333333
Q ss_pred hhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccc
Q 000194 1679 GSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAH 1758 (1880)
Q Consensus 1679 g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~ 1758 (1880)
|+ .+++.+.+++. ...| ...+|..+-..|.. . + ..+....+.+..+ .+.+
T Consensus 639 G~-------------~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~----~---~----~~e~~e~~a~~l~---~l~p- 688 (857)
T PLN03077 639 GK-------------LTEAYNFINKM-PITP-DPAVWGALLNACRI----H---R----HVELGELAAQHIF---ELDP- 688 (857)
T ss_pred CC-------------HHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH----c---C----ChHHHHHHHHHHH---hhCC-
Confidence 33 45666666654 2334 34567666554421 1 1 1122233333222 2321
Q ss_pred cCCCcchHHhHHHHHHHHHhcCCcHHHHHH---H-HhcccCCChhhHHHHHHHHH---H-hccCCC-hhHHHHHHHHHHH
Q 000194 1759 AKGVDDSLQDILRLLTLWFNHGATEEVQIA---L-QKGFAHVNINTWLVVLPQII---A-RIHSNN-RAVRELIQSLLVR 1829 (1880)
Q Consensus 1759 ~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~---~-~~~~~~ip~~~wl~~ipQLi---a-Ri~~~~-~~v~~~l~~lL~~ 1829 (1880)
. ....-.-|.+++...|..+++.+. | ++++...|-+-|+++=-..= + --.||. ..+...+..|..+
T Consensus 689 ----~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~ 763 (857)
T PLN03077 689 ----N-SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEK 763 (857)
T ss_pred ----C-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHH
Confidence 1 112233455677788887765543 3 35788888888886532211 1 112332 4455666666666
Q ss_pred HHh
Q 000194 1830 IGQ 1832 (1880)
Q Consensus 1830 i~~ 1832 (1880)
+.+
T Consensus 764 ~~~ 766 (857)
T PLN03077 764 MKA 766 (857)
T ss_pred HHh
Confidence 654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=2.7 Score=57.16 Aligned_cols=477 Identities=12% Similarity=0.080 Sum_probs=230.9
Q ss_pred HHHHHHHhhhCCC--CCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHH
Q 000194 1270 LLNLAEFMEHDEK--PLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGI 1347 (1880)
Q Consensus 1270 ll~l~efm~~~~~--~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi 1347 (1880)
.+.+.+.|...+. +-...+..+..++.+.+.+..|....+.-.... ..+ ...+...|+..|.+.|+.|.+..+
T Consensus 106 Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g----~~~-~~~~~n~Li~~y~k~g~~~~A~~l 180 (697)
T PLN03081 106 ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG----FEP-DQYMMNRVLLMHVKCGMLIDARRL 180 (697)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC----CCc-chHHHHHHHHHHhcCCCHHHHHHH
Confidence 3444555654331 112345566677777777665544433221111 122 245778999999999999999999
Q ss_pred HHHHhch--hhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcC-CCChH
Q 000194 1348 LTYAQKE--LDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWT-PAEPA 1424 (1880)
Q Consensus 1348 ~~~~~~~--~~~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~-~~~~~ 1424 (1880)
+...... .........|-+.|++++|++.|++-.+....++ ......+++++..+|..+.-...-..... ...++
T Consensus 181 f~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~--~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d 258 (697)
T PLN03081 181 FDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE--PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258 (697)
T ss_pred HhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCC--hhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence 8753221 0112222347889999999999998765544443 23456778888888876543332111000 00000
Q ss_pred HHHhHHHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHH---HHHHh-cCh--hhhHHHH
Q 000194 1425 ARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAV---LLVRR-GKV--LESYERA 1498 (1880)
Q Consensus 1425 ~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~---~~i~~-~~~--~esy~ra 1498 (1880)
..+......+.-+.|+++...+..+.++..+...+..++..+.. .+.+-+|+ ..+.+ +-. .-.|...
T Consensus 259 --~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~-----~g~~~eA~~lf~~M~~~g~~pd~~t~~~l 331 (697)
T PLN03081 259 --TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL-----HGYSEEALCLYYEMRDSGVSIDQFTFSIM 331 (697)
T ss_pred --ceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 01112335677788999998888887765432222212111110 01111221 11111 111 1234333
Q ss_pred HHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHH
Q 000194 1499 YSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASL 1578 (1880)
Q Consensus 1499 y~~l~~lq~L~ELeE~i~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~l 1578 (1880)
.....++..+.+-+++....... +-+........+.+...+ ..+++.=..++. -+. ..+..+|--++.-
T Consensus 332 l~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k-----~G~~~~A~~vf~---~m~--~~d~~t~n~lI~~ 400 (697)
T PLN03081 332 IRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSK-----WGRMEDARNVFD---RMP--RKNLISWNALIAG 400 (697)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHH-----CCCHHHHHHHHH---hCC--CCCeeeHHHHHHH
Confidence 33334444444444444322110 000000011112222211 122332222221 111 2367789999999
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHH-HHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccc
Q 000194 1579 CRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMY-AYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAAS 1657 (1880)
Q Consensus 1579 aRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~-~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~ 1657 (1880)
+-++|+.+.|...+.++..... . +..+.+ ..+.-+-+.| ...+|.+.++.+..+....++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~--~--------Pd~~T~~~ll~a~~~~g---~~~~a~~~f~~m~~~~g~~p~------ 461 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGV--A--------PNHVTFLAVLSACRYSG---LSEQGWEIFQSMSENHRIKPR------ 461 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC--C--------CCHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHhcCCCCC------
Confidence 9999999999999988765321 1 123332 2333333445 467899888887654321111
Q ss_pred cccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCc
Q 000194 1658 TSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSV 1737 (1880)
Q Consensus 1658 ~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~ 1737 (1880)
...-......|.+.| ..+++.+.|++.- ..| ....|..+...|.. .++
T Consensus 462 -------~~~y~~li~~l~r~G-------------~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~-------~g~--- 509 (697)
T PLN03081 462 -------AMHYACMIELLGREG-------------LLDEAYAMIRRAP-FKP-TVNMWAALLTACRI-------HKN--- 509 (697)
T ss_pred -------ccchHhHHHHHHhcC-------------CHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHH-------cCC---
Confidence 011111223333333 3556666665532 222 34456665544432 110
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHH----HhcccCCChhhHHHHHHHHH---H
Q 000194 1738 APQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIAL----QKGFAHVNINTWLVVLPQII---A 1810 (1880)
Q Consensus 1738 ~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~----~~~~~~ip~~~wl~~ipQLi---a 1810 (1880)
+..|...+-+.+.+. +.+ ...-.-|..++...|..+++.+.+ ++++...|-+.|+.+--+.- +
T Consensus 510 ----~~~a~~~~~~l~~~~-----p~~-~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~ 579 (697)
T PLN03081 510 ----LELGRLAAEKLYGMG-----PEK-LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFS 579 (697)
T ss_pred ----cHHHHHHHHHHhCCC-----CCC-CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEcc
Confidence 112222222323332 111 111234566777777776654433 35677778888876532211 1
Q ss_pred -hccCCC-hhHHHHHHHHHHHHHh
Q 000194 1811 -RIHSNN-RAVRELIQSLLVRIGQ 1832 (1880)
Q Consensus 1811 -Ri~~~~-~~v~~~l~~lL~~i~~ 1832 (1880)
--.||. ..+.+.+..++.++.+
T Consensus 580 ~d~~h~~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 580 GDRLHPQSREIYQKLDELMKEISE 603 (697)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHH
Confidence 112442 3445556666665544
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.055 Score=59.05 Aligned_cols=109 Identities=24% Similarity=0.319 Sum_probs=75.4
Q ss_pred ChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC--CCCcc
Q 000194 515 DKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG--NRGFD 592 (1880)
Q Consensus 515 ~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~--~~~fd 592 (1880)
|+.||.-++.+++.+..+-+ .+++..++.+.. .+.|+++.||..++..|+. ...+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~---------------------~~ve~~~~~l~~-~L~D~~~~VR~~al~~Ls~Li~~d~i 58 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP---------------------NLVEPYLPNLYK-CLRDEDPLVRKTALLVLSHLILEDMI 58 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc---------------------HHHHhHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHcCce
Confidence 57899999999998886432 446666665554 5789999999999888741 00000
Q ss_pred hhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcC-CcccccHHHHHHHHHHHHHHhc
Q 000194 593 DFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEK-NPAYVLPALRRHLIQLLTYLEQ 651 (1880)
Q Consensus 593 ~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~-~p~~v~p~l~~~l~~~l~~l~~ 651 (1880)
. ....++..+..++.|++++||..|..++..+... +|..+. ..+.+++..+..
T Consensus 59 k--~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~----~~~~e~i~~l~~ 112 (178)
T PF12717_consen 59 K--VKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIY----NNFPELISSLNN 112 (178)
T ss_pred e--ehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHH----HHHHHHHHHHhC
Confidence 0 1123446666788999999999999999999887 665543 344555555543
|
|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.58 Score=58.29 Aligned_cols=229 Identities=11% Similarity=0.101 Sum_probs=141.4
Q ss_pred CCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHh----cCCCCHHHHHHHH
Q 000194 720 GFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKML----NGELVWSTRREVL 795 (1880)
Q Consensus 720 g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L----~~~~~~~vr~~~l 795 (1880)
.+++.|+..+++..++..+....+ ..-+-..+++-+++...+..+.|+. +.+++.|..++ +++.++..--=.+
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s-~ENeylMk~iMRvl~~~~e~~~p~~--~~il~~L~~il~~v~kNPsnP~FnHylF 93 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGS-AENEYLMKCIMRVLSVLQEDILPIA--VEILQHLTAILKEVSKNPSNPRFNHYLF 93 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-S-TC-HHHHHHHHHHHHHSTTTTGGGH--HHHHHHHHHHHHHHHTS---HHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHhCCCCcchhhhHH
Confidence 467899999999999999975432 4455667888888888888788884 45666666555 6666777666666
Q ss_pred HHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhH
Q 000194 796 KVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYH 875 (1880)
Q Consensus 796 ~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~ 875 (1880)
.++|.+-- +..+ .. +..-.-+...+++.+..+|+.+- .+..
T Consensus 94 Esi~~lir---~~~~------------------~~-----------------~~~v~~~E~~L~P~f~~ILq~dV-~EF~ 134 (435)
T PF03378_consen 94 ESIGALIR---FVCE------------------AD-----------------PEAVSQFEEALFPPFQEILQQDV-QEFI 134 (435)
T ss_dssp HHHHHHHH---HS-G------------------GG-----------------HH---HHHHHHHHHHHHHHHTT--TTTH
T ss_pred HHHHHHHH---hccC------------------CC-----------------hhHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 66666521 1000 00 00001234667777888886553 3567
Q ss_pred HHHHHHHHHHHHHhC-CCCCCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHH--HhHHHHHHHHHHhhcCC
Q 000194 876 QKVVGSLMFIFKSMG-LGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIR--KYLQELFSLISELWSSF 952 (1880)
Q Consensus 876 ~~~~~al~~i~~~~~-~~~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~--~y~~~i~~~i~~~~~~~ 952 (1880)
+-|+|-+..+++... ....+...+++|.++.-.--.....-..+...|..++..-...+. +++..|+.+........
T Consensus 135 PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk 214 (435)
T PF03378_consen 135 PYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASK 214 (435)
T ss_dssp HHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCC
Confidence 889998888887765 344567777788776422111111123333445555544444443 67788888887766643
Q ss_pred CCCcccccccchhHHHHHHHHHHHhhh-hhhccchhhHHHHHHhccc
Q 000194 953 SLPATNRTYRGLPVLHLVQQLCLALND-EFRTHLPVILPCCIQVLSD 998 (1880)
Q Consensus 953 ~~~~~~~~~~~~~~l~~i~~l~~~l~~-~f~~yl~~l~p~ll~~l~~ 998 (1880)
.. ....+.+++.+...++. .+.||++.++..++..|++
T Consensus 215 ~~--------D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~ 253 (435)
T PF03378_consen 215 AN--------DHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQS 253 (435)
T ss_dssp TC--------HHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHH
T ss_pred Cc--------chHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhh
Confidence 31 12678999999999987 4899999999999999976
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.13 Score=67.72 Aligned_cols=194 Identities=15% Similarity=0.124 Sum_probs=134.2
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccc
Q 000194 109 SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVF 188 (1880)
Q Consensus 109 ~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l 188 (1880)
.++...+..-+- +.+-.-+..|.+.+.......+.....-...++...+....-|.+-..-.-|...|..||...+..+
T Consensus 252 ~ki~~~l~t~~~-s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~ 330 (815)
T KOG1820|consen 252 SKITKNLETEML-SKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF 330 (815)
T ss_pred hhcChHHHHhhh-ccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh
Confidence 344333333332 4466777888887777666533222222233444444444456665666668889999999999999
Q ss_pred hhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHH
Q 000194 189 NVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELL 268 (1880)
Q Consensus 189 ~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll 268 (1880)
.+|...++|.++..+.|....+|+++..++...+.. .-+..+.+.+..+++..+ ...+......++..+
T Consensus 331 ~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns----------~~l~~~~~~I~e~lk~kn-p~~k~~~~~~l~r~~ 399 (815)
T KOG1820|consen 331 RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS----------TPLSKMSEAILEALKGKN-PQIKGECLLLLDRKL 399 (815)
T ss_pred HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc----------ccHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHH
Confidence 999999999999999999999999999988876652 124566777777887765 455666677888887
Q ss_pred Hcchh--hhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChh
Q 000194 269 RNTGE--FMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRD 314 (1880)
Q Consensus 269 ~~~~~--~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~ 314 (1880)
+..+. .-.+-...+++.++...++++..||.++..+++.+...-++
T Consensus 400 ~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 400 RKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred hhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 75442 12234566777777777888899999988888877654443
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.29 Score=53.47 Aligned_cols=113 Identities=20% Similarity=0.177 Sum_probs=82.8
Q ss_pred ChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHh
Q 000194 124 DREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL 203 (1880)
Q Consensus 124 d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l 203 (1880)
|+.++..+..++|-|+.. -+.+++..++.....|.+ .++..|..|+.++..|...-.--+. ++++..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r----~~~~ve~~~~~l~~~L~D-~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR----YPNLVEPYLPNLYKCLRD-EDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHh----CcHHHHhHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence 467888999999999875 566778888888888864 4567788889999988876443333 34556677888
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCC
Q 000194 204 RDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRN 251 (1880)
Q Consensus 204 ~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~ 251 (1880)
.|+++.||..|...+..+... +. +..+...+++++..+.+.
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~---~~----~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK---RN----PNIIYNNFPELISSLNNC 113 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh---cc----chHHHHHHHHHHHHHhCc
Confidence 999999999999988776542 11 234566677777666654
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.14 Score=63.87 Aligned_cols=158 Identities=16% Similarity=0.102 Sum_probs=104.2
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh
Q 000194 194 EFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE 273 (1880)
Q Consensus 194 ~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~ 273 (1880)
..=+.|-..++|.+|.+|....-++.-. .. ....+...+.+++.+.+ +.+ .++|.+|..++|.++...++
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alA--y~----GTgnnkair~lLh~aVs---D~n-DDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALA--YV----GTGNNKAIRRLLHVAVS---DVN-DDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHH--Hh----ccCchhhHHHhhccccc---ccc-hHHHHHHHHHheeeEecChh
Confidence 4445556778899999998887665422 11 12234455666665443 444 58999999999988764433
Q ss_pred hhHHHHHHHHHHHHHHh-hcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHh
Q 000194 274 FMMSRYREVAEIVLRYL-EHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAG 350 (1880)
Q Consensus 274 ~~~~~~~~i~~~ll~~~-~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~ 350 (1880)
.|..++..+ ++-|+.||..+.-++|..|+-.+. ...+..|-....++. .|..|+.+++.|..
T Consensus 589 --------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 589 --------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-------KEAINLLEPLTSDPVDFVRQGALIALAMIMI 653 (929)
T ss_pred --------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence 333333333 578999999999999987765443 223333333333332 48999999999887
Q ss_pred hchhhhhhhhhHHHHHHHHhhcCCCC
Q 000194 351 ALDGELFHYLPTITSHLREAIAPRRG 376 (1880)
Q Consensus 351 ~v~~~~~p~l~~i~~~l~~~l~~~~~ 376 (1880)
...+...|-...|-+.+...+.+++.
T Consensus 654 Q~t~~~~pkv~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 654 QQTEQLCPKVNGFRKQLEKVINDKHE 679 (929)
T ss_pred hcccccCchHHHHHHHHHHHhhhhhh
Confidence 77777778888888888777766553
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.84 Score=58.16 Aligned_cols=208 Identities=16% Similarity=0.203 Sum_probs=121.2
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHhh----cCccchh-chHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHh
Q 000194 153 QVKMALDWLRGDRVEYRRFAAVLILKEMAEN----ASTVFNV-HVAEFVDAIWVALRDPT-LAVRERAVEALRACLRVIE 226 (1880)
Q Consensus 153 ~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~----~p~~l~~-~l~~i~~~i~~~l~D~~-~~VR~aA~~al~~~~~~i~ 226 (1880)
-++.+++.|+.+.++.....| +.+|++. .-..+.. -+..++|++...|++.+ ..|.--|+.|+-.+++++.
T Consensus 168 k~kkLL~gL~~~~Des~Qlea---l~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEA---LTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred HHHHHHHhccccCChHHHHHH---HHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc
Confidence 477788888877666655444 4444443 2223332 46788999999998765 8899999999998888765
Q ss_pred hhchhhHHH--HHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 000194 227 KRETRWRVQ--WYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSL 304 (1880)
Q Consensus 227 ~r~~~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~ 304 (1880)
+......+ .++.+++.++ .-.-.++.+-++.+|.-+-+-.+..+.. ..-+..++.+++==+-.+|+.|+.+
T Consensus 245 -~S~a~vV~~~aIPvl~~kL~----~IeyiDvAEQ~LqALE~iSR~H~~AiL~--AG~l~a~LsylDFFSi~aQR~Alai 317 (1051)
T KOG0168|consen 245 -RSSAIVVDEHAIPVLLEKLL----TIEYIDVAEQSLQALEKISRRHPKAILQ--AGALSAVLSYLDFFSIHAQRVALAI 317 (1051)
T ss_pred -chhheeecccchHHHHHhhh----hhhhhHHHHHHHHHHHHHHhhccHHHHh--cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211111 2233333222 1111355666666666555522211110 0012234444544456778888877
Q ss_pred hHhHhhhC-hhhHHHHHHHHHHHHHHHhhcCCCCc--chHHHHHHHHHhhchh---hhhhh-hhHHHHHHHHhhc
Q 000194 305 LPRIAHFL-RDRFVTNYLKICMNHILTVLRIPAER--DSGFIALGEMAGALDG---ELFHY-LPTITSHLREAIA 372 (1880)
Q Consensus 305 i~~la~~~-~~~f~~~yl~~~~~~Ll~~L~~~~~r--~~a~~alg~la~~v~~---~~~p~-l~~i~~~l~~~l~ 372 (1880)
....|... +++| +|+-+.+|.|.+.|...+.+ ..+..|+..++...-. .+... -.++++.+.+-+.
T Consensus 318 aaN~Cksi~sd~f--~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls 390 (1051)
T KOG0168|consen 318 AANCCKSIRSDEF--HFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLS 390 (1051)
T ss_pred HHHHHhcCCCccc--hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence 77777543 4566 58899999999999876544 4677777777765432 22222 1456666666653
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.05 E-value=4.5 Score=51.00 Aligned_cols=183 Identities=18% Similarity=0.179 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHcCCC-CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHH--HHHhHhhc
Q 000194 22 SLDALNRILADLCTHG-NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGAL--RAIDELID 98 (1880)
Q Consensus 22 ~~~~~~~l~~~l~s~~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i--~ai~~Li~ 98 (1880)
+..-+..||+..+... ....+- +++++ .-...+.|...+..+.+.+.-+-+.+...+|.-.. .-++.|-.
T Consensus 3 ~~~r~~~If~k~Q~s~agh~~kl---~~k~~----em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q 75 (892)
T KOG2025|consen 3 SLERMQLIFNKIQQSDAGHYSKL---LAKVM----EMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQ 75 (892)
T ss_pred HHHHHHHHHHHHHhhhcchHHHH---HHHHH----HhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhc
Confidence 3455677777775442 221211 22222 12233334444444444444455666666665322 22444444
Q ss_pred cccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHH
Q 000194 99 VALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILK 178 (1880)
Q Consensus 99 ~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~ 178 (1880)
.+.++ ..+..+.-||.+-.. ++|..|+...++.+.++....+..-.+....+.+..+.-+. ++....|..|+.+|+
T Consensus 76 ~d~e~--DlV~~~f~hlLRg~E-skdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~-Drep~VRiqAv~aLs 151 (892)
T KOG2025|consen 76 LDKEE--DLVAGTFYHLLRGTE-SKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLK-DREPNVRIQAVLALS 151 (892)
T ss_pred cCchh--hHHHHHHHHHHhccc-CcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHH
Confidence 43222 134444455555554 67899999999999998874343444455555555554443 466688999999998
Q ss_pred HHHhhcCccchhchHHHHHHHHHHh-cCCchhHHHHHHHHHH
Q 000194 179 EMAENASTVFNVHVAEFVDAIWVAL-RDPTLAVRERAVEALR 219 (1880)
Q Consensus 179 ~la~~~p~~l~~~l~~i~~~i~~~l-~D~~~~VR~aA~~al~ 219 (1880)
.+-+...+-=.+-++.+. ..+ .||+++||.+|.-.+.
T Consensus 152 rlQ~d~~dee~~v~n~l~----~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 152 RLQGDPKDEECPVVNLLK----DLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred HHhcCCCCCcccHHHHHH----HHHhcCCcHHHHHHHHHhhc
Confidence 887432221122222222 223 5999999999986553
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0094 Score=43.54 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 000194 195 FVDAIWVALRDPTLAVRERAVEALRACLR 223 (1880)
Q Consensus 195 i~~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1880)
++|.++..+.||++.||.+|+.+++.+.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999998765
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.03 E-value=6.1 Score=48.97 Aligned_cols=206 Identities=13% Similarity=0.184 Sum_probs=122.6
Q ss_pred cchhchHHHHHHHHHHhcCCc------------hhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCCh
Q 000194 187 VFNVHVAEFVDAIWVALRDPT------------LAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPV 254 (1880)
Q Consensus 187 ~l~~~l~~i~~~i~~~l~D~~------------~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~ 254 (1880)
.|.||.-+++..+.....=|. -.-|....+.+..+.-++.+.+ .++.++-.+.. .+.+|
T Consensus 333 ~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e------~lk~~~~~l~e---~~~~W 403 (559)
T KOG2081|consen 333 IFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDE------CLKQMYIRLKE---NNASW 403 (559)
T ss_pred HhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHH------HHHHHHHHHcc---CCCch
Confidence 578999999999888776333 2458888888888777665332 23333333322 34469
Q ss_pred hHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC
Q 000194 255 HSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI 334 (1880)
Q Consensus 255 ~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~ 334 (1880)
+..+|++..+..++......-.+.+.++++.++.. . ....+|.+++..+|.+.+|-..+ +.++..++.++...+..
T Consensus 404 e~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nl-p-~Q~~~~~ts~ll~g~~~ew~~~~--p~~le~v~~~~~~~~~~ 479 (559)
T KOG2081|consen 404 EEVEAALFILRAVAKNVSPEENTIMPEVLKLICNL-P-EQAPLRYTSILLLGEYSEWVEQH--PELLEPVLRYIRQGLQL 479 (559)
T ss_pred HHHHHHHHHHHHHhccCCccccchHHHHHHHHhCC-c-cchhHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHhhh
Confidence 99999999999988754433334445555555431 1 22339999999999998875432 23556677776665543
Q ss_pred CCCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCch--HHHHHHHHHHHhCC-CchHHHHHHHHH
Q 000194 335 PAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLE--ALACVGNIARAMGP-VMEPHVRGLLDI 407 (1880)
Q Consensus 335 ~~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~--a~~~l~~la~~~g~-~~~~~l~~ll~~ 407 (1880)
..--.+|..+...++.++-..+.+.++.+...+........+. +. .++.++.+....+. +..+.++++.+.
T Consensus 480 ~~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~~--e~a~l~~~~s~i~~~lp~~k~~~~~~el~~~ 553 (559)
T KOG2081|consen 480 KRLASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQINE--EAACLLQGISLIISNLPAHKAKIALEELCEP 553 (559)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHhcCCHhhhhHHHHHHhhH
Confidence 2233456666666777766666667776666554433222111 22 33444444444443 344555554443
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.51 Score=57.78 Aligned_cols=213 Identities=27% Similarity=0.319 Sum_probs=133.0
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHh
Q 000194 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSS 584 (1880)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1880)
+.+..++++++..+|..|+...+.+- ..+.++.+.. ...|+++.||..+..+
T Consensus 46 ~~~~~~l~~~~~~vr~~aa~~l~~~~---------------------------~~~av~~l~~-~l~d~~~~vr~~a~~a 97 (335)
T COG1413 46 DELLKLLEDEDLLVRLSAAVALGELG---------------------------SEEAVPLLRE-LLSDEDPRVRDAAADA 97 (335)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhhc---------------------------hHHHHHHHHH-HhcCCCHHHHHHHHHH
Confidence 44557778888999998887643321 1222332322 4689999999999999
Q ss_pred ccCCCCcchhhccHhhHHHHHHHhC-CCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCC----------
Q 000194 585 LYGNRGFDDFLAQADCLSAIFAALN-DEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSS---------- 653 (1880)
Q Consensus 585 l~~~~~fd~~L~~~~~l~~L~~~l~-D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~---------- 653 (1880)
|+. +. .++.++.+...+. |++..||..+...|+.+..... +.| ++..+++..
T Consensus 98 Lg~---~~----~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a--~~~--------l~~~l~~~~~~~a~~~~~~ 160 (335)
T COG1413 98 LGE---LG----DPEAVPPLVELLENDENEGVRAAAARALGKLGDERA--LDP--------LLEALQDEDSGSAAAALDA 160 (335)
T ss_pred HHc---cC----ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh--hHH--------HHHHhccchhhhhhhhccc
Confidence 962 11 2355667777676 8999999999999998877552 222 222222220
Q ss_pred CChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHH
Q 000194 654 ADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPL 733 (1880)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~ 733 (1880)
.....|..+...++.+.. +.....+...+.+. ...++..+..+++.+.... ..+.+.
T Consensus 161 ~~~~~r~~a~~~l~~~~~----------~~~~~~l~~~l~~~-----~~~vr~~Aa~aL~~~~~~~--------~~~~~~ 217 (335)
T COG1413 161 ALLDVRAAAAEALGELGD----------PEAIPLLIELLEDE-----DADVRRAAASALGQLGSEN--------VEAADL 217 (335)
T ss_pred hHHHHHHHHHHHHHHcCC----------hhhhHHHHHHHhCc-----hHHHHHHHHHHHHHhhcch--------hhHHHH
Confidence 111345555555544422 22344556666664 5578888888887765432 566778
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000194 734 IVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1880)
Q Consensus 734 l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg 799 (1880)
+...+.|. +..+|..++.+||.+ | ..+-...+...+..+ ++.++.......+
T Consensus 218 l~~~~~~~-~~~vr~~~~~~l~~~----~--------~~~~~~~l~~~l~~~-~~~~~~~~~~~~~ 269 (335)
T COG1413 218 LVKALSDE-SLEVRKAALLALGEI----G--------DEEAVDALAKALEDE-DVILALLAAAALG 269 (335)
T ss_pred HHHHhcCC-CHHHHHHHHHHhccc----C--------cchhHHHHHHHHhcc-chHHHHHHHHHhc
Confidence 88888876 678999999999873 1 134566677777654 4566655444443
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.91 E-value=1.2 Score=55.86 Aligned_cols=153 Identities=19% Similarity=0.186 Sum_probs=107.3
Q ss_pred HhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000194 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY 586 (1880)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1880)
+-.++.+.++-.|..-+.+.+..+... + -..++.+|+.++++|++.+||.+++.+|+
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GT-----------------g------nnkair~lLh~aVsD~nDDVrRaAVialG 580 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGT-----------------G------NNKAIRRLLHVAVSDVNDDVRRAAVIALG 580 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhcc-----------------C------chhhHHHhhcccccccchHHHHHHHHHhe
Confidence 335566778889987776665444211 0 13456678889999999999999999986
Q ss_pred CCCCcchhhccHhhHHHHHHHhCCC-CHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHH
Q 000194 587 GNRGFDDFLAQADCLSAIFAALNDE-DFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL 665 (1880)
Q Consensus 587 ~~~~fd~~L~~~~~l~~L~~~l~D~-~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1880)
= -.|. .|+.++.....|.+. ++.||-.|.-.||-.+.-.+. +.-+.+|..+.++ ...-+|+-|+-.
T Consensus 581 F-Vl~~----dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-------~eAi~lLepl~~D-~~~fVRQgAlIa 647 (929)
T KOG2062|consen 581 F-VLFR----DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-------KEAINLLEPLTSD-PVDFVRQGALIA 647 (929)
T ss_pred e-eEec----ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-------HHHHHHHhhhhcC-hHHHHHHHHHHH
Confidence 1 1221 245566666666654 789999999999977665542 1233556666665 566788888888
Q ss_pred HHHHHHhCcccccCchHHHHHHHHHHhccC
Q 000194 666 LGCLIRNCERLIRPYIAPIHKALVARLLEG 695 (1880)
Q Consensus 666 L~~l~~~~~~~~~py~~~il~~ll~~l~~~ 695 (1880)
++.|.-.+.+..-|-+..|-+.+.+.+.+.
T Consensus 648 ~amIm~Q~t~~~~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 648 LAMIMIQQTEQLCPKVNGFRKQLEKVINDK 677 (929)
T ss_pred HHHHHHhcccccCchHHHHHHHHHHHhhhh
Confidence 888877777777788888888888888875
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.58 Score=53.73 Aligned_cols=189 Identities=16% Similarity=0.191 Sum_probs=113.2
Q ss_pred HHHHHHHHhcCCChhHHHHHHHhccCCCCcc--h-hhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH
Q 000194 562 VEKLLIAAVADADVTVRHSIFSSLYGNRGFD--D-FLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL 638 (1880)
Q Consensus 562 l~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd--~-~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l 638 (1880)
+++|+...-...||.++..++.+++....|. . .......++.+...++++++.||..|+.++..++...+. ...+
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en--~~~I 91 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN--QEQI 91 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh--HHHH
Confidence 4556655556778999999888886332221 1 112234578888999999999999999999988765432 2233
Q ss_pred HHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHh--CcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHH
Q 000194 639 RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRN--CERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLA 716 (1880)
Q Consensus 639 ~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~--~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La 716 (1880)
...+.+.+..+...+-+...+..++++|..+.-. ....+..| ++.+++.+..+ +..++..++..+..|+
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~----i~~ll~LL~~G-----~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANY----IPDLLSLLSSG-----SEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhh----HHHHHHHHHcC-----ChHHHHHHHHHHHHhc
Confidence 4444444444433323556667788888887422 12233344 44455556554 5567777777777776
Q ss_pred HhcCCchhhhH--HhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCc
Q 000194 717 RVGGFGMRQYI--SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGY 763 (1880)
Q Consensus 717 ~~~g~~~~~~~--~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~ 763 (1880)
..- .+.+.+ .+..+.++..+....+.+.-..++.-+..+..+.+.
T Consensus 163 ~np--~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 163 ENP--DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred cCH--HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 531 111111 245666666666544455556667666776555543
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.82 E-value=2 Score=51.98 Aligned_cols=146 Identities=13% Similarity=0.053 Sum_probs=97.6
Q ss_pred cCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHH
Q 000194 79 ESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMAL 158 (1880)
Q Consensus 79 ~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~ 158 (1880)
.+..++.|.+.+..+..+..-..-........+...+.+=.. +.+..++..|+.+||+++.......-.+....+..++
T Consensus 227 ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~-dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii 305 (533)
T KOG2032|consen 227 TSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKAT-DPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAII 305 (533)
T ss_pred chhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHH
Confidence 345567788888877777543211111222322222222211 3456889999999999987522233334455566666
Q ss_pred hhhcCCCcchhHHHHHHHHHHHHhhcC-ccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 000194 159 DWLRGDRVEYRRFAAVLILKEMAENAS-TVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVI 225 (1880)
Q Consensus 159 ~~l~~~~~~~~R~aA~~~l~~la~~~p-~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1880)
-.|-++.++..-+.|+..|..+.+... ..+.+|+-.+...+.+...|.++.+|-+|..+++.+..+-
T Consensus 306 ~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 306 RGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 666566667788889999888887744 4778888888888888889999999999999998877653
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.022 Score=57.57 Aligned_cols=112 Identities=21% Similarity=0.114 Sum_probs=78.2
Q ss_pred hhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccccc
Q 000194 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIR 678 (1880)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~ 678 (1880)
..++.+...+.|.+..+|..++.+++.++...|......++.-..+.+..+..+ ++++.+..++++|+.++...+....
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHH
Confidence 357777888889899999999999999999876544333331222333333334 5789999999999999877653332
Q ss_pred CchH-HHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHH
Q 000194 679 PYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLA 716 (1880)
Q Consensus 679 py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La 716 (1880)
.+.. .+++.++..+.+. +..++..++.++..++
T Consensus 86 ~~~~~g~l~~l~~~l~~~-----~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSS-----NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcC-----CHHHHHHHHHHHHHhh
Confidence 2232 3677788888764 6778888888877664
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=13 Score=50.98 Aligned_cols=409 Identities=12% Similarity=0.039 Sum_probs=203.5
Q ss_pred cHHHHHHHHHHHhhcCChHHHhHHHHHHhc-h-h-h--hhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHh
Q 000194 1324 PVAVVEALIHINNQLHQHEAAVGILTYAQK-E-L-D--VQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRM 1398 (1880)
Q Consensus 1324 ~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~-~-~--~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m 1398 (1880)
.+..+.....|..-.|+.+.+..++..... . . . ....+..+.+.|+|++|++.|++.+...++. .+...++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la 90 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQN---DDYQRGLI 90 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Confidence 356778899999999999999988875442 1 1 1 2334456899999999999999988754443 35567888
Q ss_pred HHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhc-CCCC-cchh-hccccccccCCCCC
Q 000194 1399 RCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRL-DDGD-ESKL-RGLGNTAANGDGSS 1475 (1880)
Q Consensus 1399 ~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~-~~~~-~~~~-~~l~~~~~~~~~~~ 1475 (1880)
.++...|+++......+..-.. .++... ....+.+....|+.+.-....... ...+ .... ..++..+...
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~-~P~~~~--~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~---- 163 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSG-APDKAN--LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN---- 163 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----
Confidence 9999999998877666654221 122111 223355677788877655544432 1111 1111 0111111000
Q ss_pred chHHHHHHHHHHhcChhhhHHH-----HHHHHHHhH----------------hhhhHHHHHHh-hcCCCCCCchhhHHHH
Q 000194 1476 NGTFFRAVLLVRRGKVLESYER-----AYSNMVRVQ----------------QLSELEEVIDY-CTLPVGNPVAEGRRAI 1533 (1880)
Q Consensus 1476 ~~~f~~a~~~i~~~~~~esy~r-----ay~~l~~lq----------------~L~ELeE~i~~-~~~~~~~~~~~~~~~~ 1533 (1880)
+..-.|+..+.+....-.+.+ ....++++. .+.+++..++. ...|.. . ..
T Consensus 164 -~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~----~---~~ 235 (765)
T PRK10049 164 -RLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDA----T---AD 235 (765)
T ss_pred -CChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCcc----c---hH
Confidence 000011111111000000000 011111111 12233333321 111110 0 11
Q ss_pred HHHHHHHHHhh--ccCCHHHHHHHHHHHHhhcCC---cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCccccc
Q 000194 1534 IRNMWTERIQG--TKRNVEVWQALLAVRALVLPP---TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVR 1608 (1880)
Q Consensus 1534 l~~~W~~Rl~~--~~~~~~~w~~iL~~R~~vl~~---~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~ 1608 (1880)
....+.+|+.. ...+++. -+-..+.++-.. ......|+ +.+....|+++.|...+.++...++.. .
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~e--A~~~~~~ll~~~~~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~~l~~~p~~----~- 306 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKD--VISEYQRLKAEGQIIPPWAQRWV--ASAYLKLHQPEKAQSILTELFYHPETI----A- 306 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHH--HHHHHHHhhccCCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhcCCCC----C-
Confidence 22222222221 1112221 111223332211 12245554 889999999999999999887654321 0
Q ss_pred CCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCC
Q 000194 1609 YHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPG 1688 (1880)
Q Consensus 1609 ~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~ 1688 (1880)
..........+..+-.+| +..+|+..++.+......... .+..............++.+|.-+...
T Consensus 307 -~~~~~~~~~L~~a~~~~g---~~~eA~~~l~~~~~~~P~~~~-------~~~~~~~~p~~~~~~a~~~~a~~l~~~--- 372 (765)
T PRK10049 307 -DLSDEELADLFYSLLESE---NYPGALTVTAHTINNSPPFLR-------LYGSPTSIPNDDWLQGQSLLSQVAKYS--- 372 (765)
T ss_pred -CCChHHHHHHHHHHHhcc---cHHHHHHHHHHHhhcCCceEe-------ecCCCCCCCCchHHHHHHHHHHHHHHc---
Confidence 001122222222333455 468899998887643211000 000000001112334555666665543
Q ss_pred CCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHh
Q 000194 1689 LDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQD 1768 (1880)
Q Consensus 1689 ~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~ 1768 (1880)
...++.+..|.++....|....+|...|..... ++ ....|++.|-+++... +.+.. -
T Consensus 373 ---g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~-------~g-------~~~~A~~~l~~al~l~-----Pd~~~-l 429 (765)
T PRK10049 373 ---NDLPQAEMRARELAYNAPGNQGLRIDYASVLQA-------RG-------WPRAAENELKKAEVLE-----PRNIN-L 429 (765)
T ss_pred ---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------cC-------CHHHHHHHHHHHHhhC-----CCChH-H
Confidence 357889999999999999999999888875332 11 2357777777777764 23222 2
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHhcccCC
Q 000194 1769 ILRLLTLWFNHGATEEVQIALQKGFAHV 1796 (1880)
Q Consensus 1769 ~~RlLtLwf~~g~~~~v~~~~~~~~~~i 1796 (1880)
..-.-...+..+...+....+++.+..-
T Consensus 430 ~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 430 EVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 2222224455555555444444444433
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.15 Score=66.99 Aligned_cols=188 Identities=15% Similarity=0.157 Sum_probs=125.3
Q ss_pred hhHHHHHHHHHHhhccc---CCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHH
Q 000194 105 ASKVSKFSNYMRTVFEV---KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMA 181 (1880)
Q Consensus 105 ~~~~~~~~~~L~~~l~~---~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la 181 (1880)
.+.+.+|++++..+... ..|++...+|.-|||||.-. .++|.++.++-.+..+....++..|--++.+++.+|
T Consensus 914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i----Sa~fces~l~llftimeksp~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI----SAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLA 989 (1251)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHhcCCCceeeecchheccchh
Confidence 45678898887776532 35799999999999999875 788999999999988876778888999999999999
Q ss_pred hhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHH
Q 000194 182 ENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSL 261 (1880)
Q Consensus 182 ~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al 261 (1880)
-.-|+.+.|+ -+.+...|+|+++.||+.|...+..++- . .-.. ++..+.+....+.+++ .+++--|=
T Consensus 990 v~fpnlie~~----T~~Ly~rL~D~~~~vRkta~lvlshLIL--n-dmiK-----VKGql~eMA~cl~D~~-~~IsdlAk 1056 (1251)
T KOG0414|consen 990 VRFPNLIEPW----TEHLYRRLRDESPSVRKTALLVLSHLIL--N-DMIK-----VKGQLSEMALCLEDPN-AEISDLAK 1056 (1251)
T ss_pred hhcccccchh----hHHHHHHhcCccHHHHHHHHHHHHHHHH--h-hhhH-----hcccHHHHHHHhcCCc-HHHHHHHH
Confidence 9989887754 4567789999999999999988876531 1 0000 1223334444555553 23222222
Q ss_pred HHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC
Q 000194 262 LAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP 335 (1880)
Q Consensus 262 ~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~ 335 (1880)
.-+.+| .++...+=...-+.|++|..- ..-+.-+..+|.+|+..+++.
T Consensus 1057 ~FF~El-----------------------s~k~n~iynlLPdil~~Ls~~---~l~~~~~~~vm~~li~~ikkd 1104 (1251)
T KOG0414|consen 1057 SFFKEL-----------------------SSKGNTIYNLLPDILSRLSNG---NLEEESYKTVMEFLIGLIKKD 1104 (1251)
T ss_pred HHHHHh-----------------------hhcccchhhhchHHHHhhccC---cccchhhHHHHHHHHHHhccc
Confidence 233333 333322333333444444432 111223489999999999865
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.028 Score=56.86 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=76.7
Q ss_pred CChHhHHHHHHHHHHHHHhCcccccCchH-HHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH-HhHH
Q 000194 654 ADNKCREESAKLLGCLIRNCERLIRPYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELM 731 (1880)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~~~~~py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~l~ 731 (1880)
+++..|..++.+|+.++...+.....++. .+++.+++.+.++ ++.++..++.+++.++...+.....+. ..++
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l 93 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-----DEEVVKAALWALRNLAAGPEDNKLIVLEAGGV 93 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-----CHHHHHHHHHHHHHHccCcHHHHHHHHHCCCh
Confidence 46788999999999999876555545455 6778888888864 788999999999999876543333333 3479
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 000194 732 PLIVEALLDGAAVTKREVAVSTLGQVVQ 759 (1880)
Q Consensus 732 p~l~~~l~d~~~~~~r~~Al~~Lg~l~~ 759 (1880)
+.+++.+.+. +...|+.|+++|+.+++
T Consensus 94 ~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 94 PKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 9999999876 57799999999998763
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.36 Score=60.74 Aligned_cols=262 Identities=17% Similarity=0.186 Sum_probs=125.0
Q ss_pred chhHHHHHHhhccc--ccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhH
Q 000194 479 SAPVQLALQTLARF--NFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRR 556 (1880)
Q Consensus 479 ~~~~~~Al~~L~~~--~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (1880)
.+.+.+|-+.+..| .|. .+.+-.-++.+.+.+|++..||+.|...+..+....+ +
T Consensus 36 ~k~K~Laaq~I~kffk~FP--~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~---------------------~ 92 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHFP--DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP---------------------E 92 (556)
T ss_dssp HHHHHHHHHHHHHHHCC-G--GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T-----------------------T
T ss_pred HHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH---------------------H
Confidence 44678899999988 453 2334444566788899999999999998887765332 1
Q ss_pred HHHHHHHHHHHHHhcCCCh---hHHHHHHHhccCCCCcchhhccHhhHHHHHHHhC---CCCHhHHHHHHHHHHhhhcCC
Q 000194 557 LIEELVEKLLIAAVADADV---TVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALN---DEDFDVREYAISVAGRLSEKN 630 (1880)
Q Consensus 557 ~~~~vl~~Ll~~~~~d~~~---~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~---D~~~~VR~~a~~~l~~l~~~~ 630 (1880)
.+..|..-|.+...+|... .|+.+.++-|. .|+ ...+..+|..+. ..+..||+.+++.|..-....
T Consensus 93 ~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~----~d~----k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l 164 (556)
T PF05918_consen 93 HVSKVADVLVQLLQTDDPVELDAVKNSLMSLLK----QDP----KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPL 164 (556)
T ss_dssp -HHHHHHHHHHHTT---HHHHHHHHHHHHHHHH----H-H----HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS
T ss_pred HHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHh----cCc----HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhC
Confidence 2333333333333344322 23344444442 222 234666665443 345679999999775433333
Q ss_pred ccc-cc--HHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccc----ccCchHHHHHHHHHHhccCCC-CCCCh
Q 000194 631 PAY-VL--PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL----IRPYIAPIHKALVARLLEGTG-INANN 702 (1880)
Q Consensus 631 p~~-v~--p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~----~~py~~~il~~ll~~l~~~~~-~~~~~ 702 (1880)
+.. +. .....++...+..+..+ .. ..=..++-.+.+..+-+ -.+-...+++.+.....-+.. ...++
T Consensus 165 ~~~~~~p~~E~e~~i~~~ikkvL~D---VT--aeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~ 239 (556)
T PF05918_consen 165 KPELLTPQKEMEEFIVDEIKKVLQD---VT--AEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDP 239 (556)
T ss_dssp -TTTS---HHHHHHHHHHHHHHCTT-------HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSH
T ss_pred cHHHhhchHHHHHHHHHHHHHHHHh---cc--HHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCH
Confidence 433 33 23445555544443332 11 12234555666655431 122345566666644421110 11245
Q ss_pred hHHHHHHHHHHHHHHhc--CCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHH
Q 000194 703 GIISGVLVTVGDLARVG--GFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780 (1880)
Q Consensus 703 ~v~~~~~~~l~~La~~~--g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~ 780 (1880)
.....++.|+..-.... |..-.+|+.-+...++..+.+- ..+.|..-++.|..++.++|.. . ..++++.+.+
T Consensus 240 e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l-~e~~kl~lLk~lAE~s~~~~~~-d----~~~~L~~i~~ 313 (556)
T PF05918_consen 240 ESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDL-PEDRKLDLLKLLAELSPFCGAQ-D----ARQLLPSIFQ 313 (556)
T ss_dssp HHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT------HHHHHHHHHHHHHTT-----T----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhC-ChHHHHHHHHHHHHHcCCCCcc-c----HHHHHHHHHH
Confidence 55566666665433221 2222333333333333333332 3356677788899988887743 1 2455666655
Q ss_pred Hh
Q 000194 781 ML 782 (1880)
Q Consensus 781 ~L 782 (1880)
.|
T Consensus 314 ~L 315 (556)
T PF05918_consen 314 LL 315 (556)
T ss_dssp HH
T ss_pred HH
Confidence 55
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.63 E-value=10 Score=48.48 Aligned_cols=256 Identities=16% Similarity=0.156 Sum_probs=123.1
Q ss_pred CHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHH
Q 000194 612 DFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVAR 691 (1880)
Q Consensus 612 ~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~ 691 (1880)
..++|.++++++..+++..-.. ....|..+...+..-..+ ++.. .-+.+|..|-++..+. ..+...+.+.+..-
T Consensus 42 p~e~R~~~~~ll~~~i~~~~~~-~~~~R~~fF~~I~~~~~~-~d~~---~~l~aL~~LT~~Grdi-~~~~~~i~~~L~~w 115 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQDSS-SGLMRAEFFRDISDPSND-DDFD---LRLEALIALTDNGRDI-DFFEYEIGPFLLSW 115 (464)
T ss_pred CHHHHHHHHHHHHHHHHccccc-cHHHHHHHHHHHhcCCCc-hhHH---HHHHHHHHHHcCCcCc-hhcccchHHHHHHH
Confidence 4679999999999999887432 345676555544322121 2223 3344555555544333 33333444443333
Q ss_pred hccC-------------C--CC-C------CChhHHHHHHHHHHHHHHhcCCch-hhhHHhHHHHHHHHHhcCCchhhHH
Q 000194 692 LLEG-------------T--GI-N------ANNGIISGVLVTVGDLARVGGFGM-RQYISELMPLIVEALLDGAAVTKRE 748 (1880)
Q Consensus 692 l~~~-------------~--~~-~------~~~~v~~~~~~~l~~La~~~g~~~-~~~~~~l~p~l~~~l~d~~~~~~r~ 748 (1880)
+..- . .. . .+.......+.-+..+.+.....+ ...+..++..++......++.+.=.
T Consensus 116 l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~ 195 (464)
T PF11864_consen 116 LEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIE 195 (464)
T ss_pred HHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHH
Confidence 3210 0 00 0 011112233333333444333333 2455566666666544333333335
Q ss_pred HHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCC
Q 000194 749 VAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASD 828 (1880)
Q Consensus 749 ~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~ 828 (1880)
.++..|..++.+.. -|-..++.++..|..+.... .....+-+++..+-
T Consensus 196 ~~L~vldaii~y~~---iP~~sl~~~i~vLCsi~~~~---~l~~~~w~~m~nL~-------------------------- 243 (464)
T PF11864_consen 196 ACLSVLDAIITYGD---IPSESLSPCIEVLCSIVNSV---SLCKPSWRTMRNLL-------------------------- 243 (464)
T ss_pred HHHHHHHHHHHcCc---CChHHHHHHHHHHhhHhccc---ccchhHHHHHHHHH--------------------------
Confidence 66777777666432 24444555666665553322 22222333222210
Q ss_pred CCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhc--CCChhhhH---HHHHHHHHHHHHHhCCCCCCC--cch--
Q 000194 829 SGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILR--DPSLASYH---QKVVGSLMFIFKSMGLGCVPY--LPK-- 899 (1880)
Q Consensus 829 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~--d~s~~~~~---~~~~~al~~i~~~~~~~~~~~--l~~-- 899 (1880)
..+....++..|..+|. |+.....- ..++..+..++-..|..-.|- +..
T Consensus 244 ----------------------~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~ 301 (464)
T PF11864_consen 244 ----------------------KSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSS 301 (464)
T ss_pred ----------------------cCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHH
Confidence 01234567789999994 33322211 122322333222233343443 344
Q ss_pred hhHHHHHHHhcCCcchhHHHHHHHHHHH
Q 000194 900 VLPDLFHTVRTCDDYLKDYITWKLGTLV 927 (1880)
Q Consensus 900 iip~ll~~l~~~~~~~~~~~~~~l~~lv 927 (1880)
++|.+..+++..++.+--.++..+..++
T Consensus 302 vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 302 VLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 9999999999776655445555555565
|
|
| >KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.58 E-value=10 Score=48.26 Aligned_cols=161 Identities=16% Similarity=0.100 Sum_probs=91.0
Q ss_pred HhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccc-ccCc----hH-HHHH
Q 000194 613 FDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL-IRPY----IA-PIHK 686 (1880)
Q Consensus 613 ~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~-~~py----~~-~il~ 686 (1880)
.++|..---.+.+++...|......+|+.+...+..... ++...-|.|+..+..+.+..+.. +.-. .+ .++.
T Consensus 413 ~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e--~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~ 490 (980)
T KOG2021|consen 413 EEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKE--ESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLF 490 (980)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHhhccccccccccCccccHHHHHH
Confidence 367887777888888888887777777766555443222 34566678999999998765321 1100 11 1222
Q ss_pred HHHHHhccCCC-CCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcC-----CchhhHHHHHHHHHHHHhh
Q 000194 687 ALVARLLEGTG-INANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDG-----AAVTKREVAVSTLGQVVQS 760 (1880)
Q Consensus 687 ~ll~~l~~~~~-~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~-----~~~~~r~~Al~~Lg~l~~~ 760 (1880)
.+++.+-.... .-.++.|..-.++.+-.-. .|-.+-.+-+|.++.++-|. .+..+|..|-+-+.+++..
T Consensus 491 ~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~-----kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKl 565 (980)
T KOG2021|consen 491 LNELLLMTSQVLAHDHELVQLLFMELIVRYN-----KFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKL 565 (980)
T ss_pred HHHHHHHHcccccCCchHHHHHHHHHHHHHH-----HHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHH
Confidence 22222221100 0124444443344433322 23333345677777776542 2456888888888888888
Q ss_pred cCcccccCCcchHHHHHHHHHh
Q 000194 761 TGYVITPYNEYPQLLGLLLKML 782 (1880)
Q Consensus 761 ~~~~i~p~~~~p~ll~~Ll~~L 782 (1880)
....+.||.+ +++..+-..|
T Consensus 566 Lkkqlvpfie--~iln~iqdlL 585 (980)
T KOG2021|consen 566 LKKQLVPFIE--EILNKIQDLL 585 (980)
T ss_pred HHHHHHHHHH--HHHHHHHHHH
Confidence 7666667653 5555555555
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.56 E-value=11 Score=48.43 Aligned_cols=346 Identities=14% Similarity=0.124 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHhhhChHHHHH-HHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhccc
Q 000194 43 ASLALRKHIEEQARDLGGEAFSR-FMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEV 121 (1880)
Q Consensus 43 aa~~l~~~v~~~~~~~~~~~~~~-~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~ 121 (1880)
+.+-|.+++--. ..+|.|.+ ---+++=.+.++.++.|.-.|..--++|..+-.... + .-. -.+-|.+=+.
T Consensus 40 c~~~lskllyll---~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~ise-d-vii---vtsslmkD~t- 110 (865)
T KOG1078|consen 40 CRHILSKLLYLL---NQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISE-D-VII---VTSSLMKDMT- 110 (865)
T ss_pred HHHHHHHHHHHH---hcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccch-h-hhh---hhHHHHhhcc-
Confidence 555566655222 33445532 223344457788999999999989999998865531 2 111 1122222222
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHH
Q 000194 122 KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWV 201 (1880)
Q Consensus 122 ~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~ 201 (1880)
.....++-.|-++|-++... +... -++..++.++ -+++...+-+|+.----+....+.......+.+.+.
T Consensus 111 ~~~d~yr~~AiR~L~~I~d~-~m~~--~iery~kqai----vd~~~avSsaalvss~hll~~~~~~vkrw~neiqea--- 180 (865)
T KOG1078|consen 111 GKEDLYRAAAIRALCSIIDG-TMLQ--AIERYMKQAI----VDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEA--- 180 (865)
T ss_pred CCCcchhHHHHHHHHhhcCc-chhH--HHHHHHHhHe----eccccccchHHHHHHhhhhcccHHHHHHHHHhhhhc---
Confidence 22334455555555555432 2111 2333344443 345545555544322222223333444444444432
Q ss_pred HhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHh-hccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH
Q 000194 202 ALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQD-GLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR 280 (1880)
Q Consensus 202 ~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~-~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~ 280 (1880)
..+-+.-|+.-|.--|.+ +.+.+. -.+.+++..... ++.+ .++-+..+....+...+- .+...
T Consensus 181 -~~s~~~m~QyHalglLyq----irk~dr----la~sklv~~~~~~~~~~------~~A~~~lir~~~~~l~~~-~~~~s 244 (865)
T KOG1078|consen 181 -VNSDNIMVQYHALGLLYQ----IRKNDR----LAVSKLVQKFTRGSLKS------PLAVCMLIRIASELLKEN-QQADS 244 (865)
T ss_pred -cCcHHHHHHHHHHHHHHH----HHhhhH----HHHHHHHHHHccccccc------hhHHHHHHHHHHHHhhhc-ccchh
Confidence 222333343333322222 111111 011222222211 1221 233333332222211111 22223
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhh
Q 000194 281 EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFH 358 (1880)
Q Consensus 281 ~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p 358 (1880)
.+...+-+++.|+..+|...+..++-.+....+..+. +.+..|...+..++ .|-+|...|..+|+..+..+
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v-- 317 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV-- 317 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc--
Confidence 3445555667888999988888888777665555443 36666777777665 58899999999998876532
Q ss_pred hhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHH--hcCCCHH----HHHHHHHHHHhCCCCh
Q 000194 359 YLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMF--SAGLSTT----LVDALEQITVSIPSLL 432 (1880)
Q Consensus 359 ~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~--~~~ls~~----l~~~l~~i~~~~p~l~ 432 (1880)
...+.=.+.|.....+ .-+.-++..+.+...+ .-+..++.++- -+.++++ ..++...++..+|...
T Consensus 318 ---~~cN~elE~lItd~Nr--sIat~AITtLLKTG~e---~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~ 389 (865)
T KOG1078|consen 318 ---TVCNLDLESLITDSNR--SIATLAITTLLKTGTE---SSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH 389 (865)
T ss_pred ---cccchhHHhhhccccc--chhHHHHHHHHHhcch---hHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHH
Confidence 1111111122112111 2334445555444222 22334443332 2344444 3567777777777544
Q ss_pred HHHHHH
Q 000194 433 PTIQDR 438 (1880)
Q Consensus 433 ~~i~~~ 438 (1880)
..+.+-
T Consensus 390 ~~~m~F 395 (865)
T KOG1078|consen 390 TVMMNF 395 (865)
T ss_pred HHHHHH
Confidence 443333
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.54 E-value=1 Score=51.83 Aligned_cols=216 Identities=11% Similarity=0.150 Sum_probs=125.8
Q ss_pred HHhhhc-CCChhhhhhHHHHHhHhhccccCcchhHHHHH--HHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHH
Q 000194 74 ISGLLE-SNDAAENLGALRAIDELIDVALGENASKVSKF--SNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEV 150 (1880)
Q Consensus 74 i~~l~~-s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~--~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v 150 (1880)
+..+++ +.++..+..++.++.....+. .+...++.+ .+.+..+++ .+++.+...|.+++..|+... ....-+
T Consensus 17 Ll~lL~~t~dp~i~e~al~al~n~aaf~--~nq~~Ir~~Ggi~lI~~lL~-~p~~~vr~~AL~aL~Nls~~~--en~~~I 91 (254)
T PF04826_consen 17 LLCLLESTEDPFIQEKALIALGNSAAFP--FNQDIIRDLGGISLIGSLLN-DPNPSVREKALNALNNLSVND--ENQEQI 91 (254)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccCh--hHHHHHHHcCCHHHHHHHcC-CCChHHHHHHHHHHHhcCCCh--hhHHHH
Confidence 334554 467777777888888876553 233344444 457778886 678999999999999987753 233445
Q ss_pred HHHHHHHHhhhcCC-CcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhc
Q 000194 151 EFQVKMALDWLRGD-RVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE 229 (1880)
Q Consensus 151 ~~~~~~~~~~l~~~-~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~ 229 (1880)
+..+..+++.+.+. -+.....+|+.+|..|+-. ......+...++.++..|...+..+|.-+..+|..+.. +.+
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~--~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~---np~ 166 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT--NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE---NPD 166 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC--cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc---CHH
Confidence 66677777776543 3456678999998888633 21122333444455556666677788777776655432 111
Q ss_pred hhhHHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch---------hh----hHH---HHHHHHHHHHHHhhc
Q 000194 230 TRWRVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG---------EF----MMS---RYREVAEIVLRYLEH 292 (1880)
Q Consensus 230 ~~~~~~~~-~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~---------~~----~~~---~~~~i~~~ll~~~~~ 292 (1880)
...+.+ .+.+.....-+....+.+....++..+..+-++-. +| +.. ......+.+.....|
T Consensus 167 --~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h 244 (254)
T PF04826_consen 167 --MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANH 244 (254)
T ss_pred --HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcC
Confidence 111221 23333444334443345666677777666644211 11 111 122244566677788
Q ss_pred chhHHHHHH
Q 000194 293 RDRLVRLSI 301 (1880)
Q Consensus 293 ~~~~Vr~~~ 301 (1880)
+++.||..|
T Consensus 245 ~d~ev~~~v 253 (254)
T PF04826_consen 245 PDPEVKEQV 253 (254)
T ss_pred CCHHHhhhc
Confidence 999998765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=5.7 Score=49.81 Aligned_cols=64 Identities=17% Similarity=0.088 Sum_probs=52.8
Q ss_pred cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 000194 1566 TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643 (1880)
Q Consensus 1566 ~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~ 1643 (1880)
.++....+-.+++|.++|+++.|..++.++....|+ +......+..+++.|+ ..+|....++-+
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-----------~~~~~~La~~~~~~g~---~~~A~~~~~~~l 388 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-----------AYDYAWLADALDRLHK---PEEAAAMRRDGL 388 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 366888999999999999999999999998876542 4555789999999996 578888777644
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.46 E-value=13 Score=48.74 Aligned_cols=173 Identities=11% Similarity=0.069 Sum_probs=104.2
Q ss_pred cchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHH
Q 000194 166 VEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQ 245 (1880)
Q Consensus 166 ~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~ 245 (1880)
...++.|.-.++..+..|-. ++.+++.+++.+...+.++++--.-=+. +.+...++-....++..+
T Consensus 33 ~~~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~--------~yak~~P~~~lLavNti~ 98 (757)
T COG5096 33 DYKKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLE--------RYAKLKPELALLAVNTIQ 98 (757)
T ss_pred hHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHH--------HHhccCHHHHHHHHHHHH
Confidence 33456666677777777644 5566666666666566666554333222 233344455666777788
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHH-
Q 000194 246 DGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKIC- 324 (1880)
Q Consensus 246 ~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~- 324 (1880)
.-+.+++ ...|+.|+-.++.+= +..-.+.++..+.++++|+++.||+.|.-++..+-..+++. ++..
T Consensus 99 kDl~d~N-~~iR~~AlR~ls~l~------~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l-----~~~~g 166 (757)
T COG5096 99 KDLQDPN-EEIRGFALRTLSLLR------VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL-----YHELG 166 (757)
T ss_pred hhccCCC-HHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh-----hhccc
Confidence 8888886 678888777765441 12233445666778889999999999999999887777653 3333
Q ss_pred HHHHHHhh-cCC--CCcchHHHHHHHHHhhchhhhhhhhhHHHHHH
Q 000194 325 MNHILTVL-RIP--AERDSGFIALGEMAGALDGELFHYLPTITSHL 367 (1880)
Q Consensus 325 ~~~Ll~~L-~~~--~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l 367 (1880)
.-.++..| ... .....|+.++..+-.. ...+|...+...+
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e---~a~~~~~~~~~~i 209 (757)
T COG5096 167 LIDILKELVADSDPIVIANALASLAEIDPE---LAHGYSLEVILRI 209 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhchh---hhhhHHHHHHHHh
Confidence 33333333 332 2345566666554322 3345555444433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=6.1 Score=53.00 Aligned_cols=294 Identities=11% Similarity=-0.006 Sum_probs=161.9
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hhh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-ELD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~~----~~~~~~~~ 1364 (1880)
.++.+....|.+..|+..++...... ++.......|..+|.+.|+.+.+.-.++.+.. ..+ .......+
T Consensus 81 ~l~~~~l~~g~~~~A~~~l~~~l~~~------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l 154 (656)
T PRK15174 81 RWVISPLASSQPDAVLQVVNKLLAVN------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTL 154 (656)
T ss_pred HHhhhHhhcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 44555567888999998888776532 34456677889999999999999887775432 111 11233458
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChh
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWD 1444 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd 1444 (1880)
...|++++|...|++.....+++. +..... ..+...|+|+.-....+...... +..........+.+.+..|+++
T Consensus 155 ~~~g~~~eA~~~~~~~~~~~P~~~---~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~-~~~~~~~~~~l~~~l~~~g~~~ 229 (656)
T PRK15174 155 VLMDKELQAISLARTQAQEVPPRG---DMIATC-LSFLNKSRLPEDHDLARALLPFF-ALERQESAGLAVDTLCAVGKYQ 229 (656)
T ss_pred HHCCChHHHHHHHHHHHHhCCCCH---HHHHHH-HHHHHcCCHHHHHHHHHHHHhcC-CCcchhHHHHHHHHHHHCCCHH
Confidence 899999999999997765544432 223333 34788899987776665532211 1011112234467788899998
Q ss_pred hHHHHHhhcCC-CCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCC
Q 000194 1445 QMAEYVSRLDD-GDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVG 1523 (1880)
Q Consensus 1445 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~ELeE~i~~~~~~~~ 1523 (1880)
.-.......-. .+. .....+.-+......++..+.. -+.+..++.+++.. |+.
T Consensus 230 eA~~~~~~al~~~p~---------------~~~~~~~Lg~~l~~~G~~~eA~---------~~A~~~~~~Al~l~--P~~ 283 (656)
T PRK15174 230 EAIQTGESALARGLD---------------GAALRRSLGLAYYQSGRSREAK---------LQAAEHWRHALQFN--SDN 283 (656)
T ss_pred HHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHcCCchhhH---------HHHHHHHHHHHhhC--CCC
Confidence 87665543311 100 0000011112222223221111 12233344444321 211
Q ss_pred CCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhh-cCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC
Q 000194 1524 NPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALV-LPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPET 1602 (1880)
Q Consensus 1524 ~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~v-l~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~ 1602 (1880)
......+- + +.....+++.-... .++.+ +.| ++...+..++.+..+.|+++.|...+.++...+|.
T Consensus 284 ----~~a~~~lg--~---~l~~~g~~~eA~~~--l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~- 350 (656)
T PRK15174 284 ----VRIVTLYA--D---ALIRTGQNEKAIPL--LQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV- 350 (656)
T ss_pred ----HHHHHHHH--H---HHHHCCCHHHHHHH--HHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-
Confidence 11111110 1 01111222211111 12222 233 45677888899999999999999999888765442
Q ss_pred CcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000194 1603 SHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1880)
Q Consensus 1603 ~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~ 1645 (1880)
.+.+..-.+..+...|+ ..+|+..++..+..
T Consensus 351 ---------~~~~~~~~a~al~~~G~---~deA~~~l~~al~~ 381 (656)
T PRK15174 351 ---------TSKWNRYAAAALLQAGK---TSEAESVFEHYIQA 381 (656)
T ss_pred ---------chHHHHHHHHHHHHCCC---HHHHHHHHHHHHHh
Confidence 23344445677778884 67899998887653
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=95.31 E-value=1.1 Score=53.47 Aligned_cols=132 Identities=20% Similarity=0.225 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHH
Q 000194 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA 637 (1880)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1880)
+..+++.|+.-++..+++.||..++++|+-+.-+|..++. +.++.++.+++..+.+||..|++++.++...++..+...
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 5577888888889999999999999999743344444432 467777777766689999999999999888776544332
Q ss_pred HH--------HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhcc
Q 000194 638 LR--------RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLE 694 (1880)
Q Consensus 638 l~--------~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~ 694 (1880)
.. ..+..++...-.+ .+++.+..|+++++.+.-+.. +.+ .+.++..|+-..=+
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~a~EGl~KLlL~~~--i~~-~~~vL~~Lll~yF~ 163 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDS-ENPELQAIAVEGLCKLLLSGR--ISD-PPKVLSRLLLLYFN 163 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcCC--CCc-HHHHHHHHHHHHcC
Confidence 22 2344555554445 477889999999988875422 111 24555555544433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.30 E-value=9.8 Score=46.22 Aligned_cols=320 Identities=18% Similarity=0.237 Sum_probs=171.8
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCC
Q 000194 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGE 1442 (1880)
Q Consensus 1363 ~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~ 1442 (1880)
-+=+.|.|++|..+|+..++-.++.. -....+--||..+|+|+.+.+.+..... .++.+-+.+ .-.|.|.=.||+
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l~p~ep---iFYsNraAcY~~lgd~~~Vied~TkALE-l~P~Y~KAl-~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIELCPDEP---IFYSNRAACYESLGDWEKVIEDCTKALE-LNPDYVKAL-LRRASAHEQLGK 198 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCCc---hhhhhHHHHHHHHhhHHHHHHHHHHHhh-cCcHHHHHH-HHHHHHHHhhcc
Confidence 36678899999999999997665521 2345688899999999999877755332 233332221 123445556777
Q ss_pred hhhHH-H-HHhhcCCC---Ccch-h--hcc---cc----ccccCCC---CCchHHHHHHHHHHh----------------
Q 000194 1443 WDQMA-E-YVSRLDDG---DESK-L--RGL---GN----TAANGDG---SSNGTFFRAVLLVRR---------------- 1488 (1880)
Q Consensus 1443 Wd~~~-~-~~~~~~~~---~~~~-~--~~l---~~----~~~~~~~---~~~~~f~~a~~~i~~---------------- 1488 (1880)
.+.-- + .+..+.++ .++. . +.| +. ....... -+...|...+..+-.
T Consensus 199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence 76522 2 11111111 0000 0 000 00 0000000 011222222221111
Q ss_pred ----------cChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHH-----HHHhhcc-CCHHHH
Q 000194 1489 ----------GKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWT-----ERIQGTK-RNVEVW 1552 (1880)
Q Consensus 1489 ----------~~~~esy~ray~~l~~lq~L~ELeE~i~~~~~~~~~~~~~~~~~~l~~~W~-----~Rl~~~~-~~~~~w 1552 (1880)
....|+|..+|+.+..-.-..|.+.-. |.+ ....+.+-.... .-|.|-. ..-+..
T Consensus 279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~--------n~~-d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSV--------NEI-DAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccc--------ccc-chhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 014567888888775544444433321 111 011122211111 1122211 111223
Q ss_pred HHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchH
Q 000194 1553 QALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKR 1632 (1880)
Q Consensus 1553 ~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~ 1632 (1880)
+.++.+.... ...+|+.+.+.-...+-+...+.+.++..++|+ .|.|.+.++....-.+ +-
T Consensus 350 ~~~I~l~~~~------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~----------n~dvYyHRgQm~flL~---q~ 410 (606)
T KOG0547|consen 350 DAAIKLDPAF------NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE----------NPDVYYHRGQMRFLLQ---QY 410 (606)
T ss_pred HHHHhcCccc------chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC----------CCchhHhHHHHHHHHH---HH
Confidence 3333332222 334999999999999999999999999888764 4667777776666555 35
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch
Q 000194 1633 KEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG 1712 (1880)
Q Consensus 1633 ~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~ 1712 (1880)
.+|+...++-+. +. .....+-+++-++.|.. ..+++.++.|+++.+-.|+..
T Consensus 411 e~A~aDF~Kai~-L~-------------------pe~~~~~iQl~~a~Yr~--------~k~~~~m~~Fee~kkkFP~~~ 462 (606)
T KOG0547|consen 411 EEAIADFQKAIS-LD-------------------PENAYAYIQLCCALYRQ--------HKIAESMKTFEEAKKKFPNCP 462 (606)
T ss_pred HHHHHHHHHHhh-cC-------------------hhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhCCCCc
Confidence 677776665332 11 11223433333444442 247889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhcc
Q 000194 1713 KAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAA 1757 (1880)
Q Consensus 1713 k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~ 1757 (1880)
..+..+|..-.. .+-.-.|++.|=++|.+.+
T Consensus 463 Evy~~fAeiLtD--------------qqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 463 EVYNLFAEILTD--------------QQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred hHHHHHHHHHhh--------------HHhHHHHHHHHHHHHhhcc
Confidence 998877754221 1234478999999998864
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=95.26 E-value=4.8 Score=51.00 Aligned_cols=128 Identities=19% Similarity=0.174 Sum_probs=75.4
Q ss_pred HHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCch
Q 000194 68 DQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTA 147 (1880)
Q Consensus 68 ~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~ 147 (1880)
++-.+.+++|+...|...|..||-+|-.++.- ++..+.|.++.|.+++. ++|...+..+-++|-.|.... ..
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~----~~~~v~kvaDvL~QlL~-tdd~~E~~~v~~sL~~ll~~d---~k 129 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD----NPEHVSKVADVLVQLLQ-TDDPVELDAVKNSLMSLLKQD---PK 129 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT----HHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh----HHHHHhHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhcC---cH
Confidence 34456678899999999999888888777633 34578899999999997 667788888888888776641 12
Q ss_pred hHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCc-cch--hchHH-HHHHHHHHhcC
Q 000194 148 DEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAST-VFN--VHVAE-FVDAIWVALRD 205 (1880)
Q Consensus 148 ~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~-~l~--~~l~~-i~~~i~~~l~D 205 (1880)
..+...+..+..- ...++..|.-++.+|+.=....+. .+. .-+.. |++.|-..|.|
T Consensus 130 ~tL~~lf~~i~~~--~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 130 GTLTGLFSQIESS--KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp HHHHHHHHHHH-----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhc--ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh
Confidence 2222333333210 134566788888777654444443 444 23444 34566677777
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=8.1 Score=48.38 Aligned_cols=213 Identities=14% Similarity=0.080 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
...|...+....+.|+++.|...+.++...++. ........+.++..+|+ ..+|+..++.++..-..
T Consensus 107 ~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~----------~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~ 173 (389)
T PRK11788 107 LLALQELGQDYLKAGLLDRAEELFLQLVDEGDF----------AEGALQQLLEIYQQEKD---WQKAIDVAERLEKLGGD 173 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcc----------hHHHHHHHHHHHHHhch---HHHHHHHHHHHHHhcCC
Confidence 467889999999999999999999988765331 24556677788888884 67899988887643110
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1880)
......+..+..+|.-..+. ...++..+.|.++++.+|+...+|..+|.....
T Consensus 174 -----------------~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---- 226 (389)
T PRK11788 174 -----------------SLRVEIAHFYCELAQQALAR------GDLDAARALLKKALAADPQCVRASILLGDLALA---- 226 (389)
T ss_pred -----------------cchHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH----
Confidence 01112344455566654433 457899999999999999988888888766443
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHHHHHHHH
Q 000194 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQI 1808 (1880)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQL 1808 (1880)
.+ -...|++.|-+++..+ +.+......++..++...|...+....+++.+..-|....+..+-++
T Consensus 227 ---~g-------~~~~A~~~~~~~~~~~-----p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~ 291 (389)
T PRK11788 227 ---QG-------DYAAAIEALERVEEQD-----PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQL 291 (389)
T ss_pred ---CC-------CHHHHHHHHHHHHHHC-----hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 11 2335777777776553 23333445677788889898888777777766555543322333333
Q ss_pred HHhccCCChhHHHHHHHHHHHHHhhCchhhHHH
Q 000194 1809 IARIHSNNRAVRELIQSLLVRIGQSHPQALMYP 1841 (1880)
Q Consensus 1809 iaRi~~~~~~v~~~l~~lL~~i~~~hPqa~ly~ 1841 (1880)
..+.+..+ --..++.+..+.+|...-|-
T Consensus 292 ~~~~g~~~-----~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 292 LEEQEGPE-----AAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred HHHhCCHH-----HHHHHHHHHHHhCcCHHHHH
Confidence 33333222 23345555556789876544
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.21 Score=53.20 Aligned_cols=89 Identities=16% Similarity=0.195 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCCChHhHHHHHHHHHHHHHh-CcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHH---HH
Q 000194 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRN-CERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDL---AR 717 (1880)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~-~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~L---a~ 717 (1880)
|.-++..+... +. --+-.|...+-+++++ .++.+.|.++.++..+...+... ++++...++.++..| ..
T Consensus 40 Lpif~dGL~Et-~~-Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr-----~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 40 LPIFFDGLRET-EH-PYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR-----DPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred HHHHHhhhhcc-Cc-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHhhh
Confidence 33344444443 22 2345677888888888 78889999999999999999975 889999999999999 67
Q ss_pred hcCCchhhhHHhHHHHHHHH
Q 000194 718 VGGFGMRQYISELMPLIVEA 737 (1880)
Q Consensus 718 ~~g~~~~~~~~~l~p~l~~~ 737 (1880)
..|+.+.||+.+++|.+--.
T Consensus 113 ~vG~aLvPyyrqLLp~ln~f 132 (183)
T PF10274_consen 113 MVGEALVPYYRQLLPVLNLF 132 (183)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 78999999999999998743
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.04 E-value=1.8 Score=56.55 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=55.8
Q ss_pred CcHHHHHHHHHHHHhhccc----c-cccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhccccc-----cchhHH
Q 000194 1041 APVDIRRAAIETLTRLIPR----V-QVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFT-----IFIPSI 1110 (1880)
Q Consensus 1041 ~~~~vr~~ai~~l~~l~~~----~-~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~-----~fip~i 1110 (1880)
....+|..+++.+....+- - -+-|.+....|+++..+...++-+-..|+.++..+...-|.... .++|.+
T Consensus 815 e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~l 894 (1014)
T KOG4524|consen 815 ESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLPWL 894 (1014)
T ss_pred hhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4667889998888765543 1 25677778888899999988988899999999988887764322 256766
Q ss_pred HHHHHh
Q 000194 1111 HKLLLK 1116 (1880)
Q Consensus 1111 ~~~l~~ 1116 (1880)
...+..
T Consensus 895 ~~~~~~ 900 (1014)
T KOG4524|consen 895 KHLCQD 900 (1014)
T ss_pred HHHHHH
Confidence 655554
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.049 Score=57.82 Aligned_cols=87 Identities=16% Similarity=0.224 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhcCCC--CcchHHHHHHHHHhh-chhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHH---HHHhCC
Q 000194 322 KICMNHILTVLRIPA--ERDSGFIALGEMAGA-LDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNI---ARAMGP 395 (1880)
Q Consensus 322 ~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~-v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~l---a~~~g~ 395 (1880)
+..+|.+..-|+..+ -|-.|.+.+.++... .++.+.|.+|+++.-++.+|.+.+.++...++.++..| ...+|+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 344555555554322 367888999998888 66678999999999999999877666656788888888 888999
Q ss_pred CchHHHHHHHHHH
Q 000194 396 VMEPHVRGLLDIM 408 (1880)
Q Consensus 396 ~~~~~l~~ll~~l 408 (1880)
++.||..+++|.+
T Consensus 117 aLvPyyrqLLp~l 129 (183)
T PF10274_consen 117 ALVPYYRQLLPVL 129 (183)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=94.97 E-value=3.8 Score=50.57 Aligned_cols=292 Identities=11% Similarity=0.079 Sum_probs=133.8
Q ss_pred HhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch---hhhHHH
Q 000194 202 ALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG---EFMMSR 278 (1880)
Q Consensus 202 ~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~---~~~~~~ 278 (1880)
.|..++..|...|+..+..++..-. ..........+++-+...+.++++.+.+..++.+|..|++... -|....
T Consensus 109 lL~~~d~~i~~~a~~iLt~l~~~~~---~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~ 185 (429)
T cd00256 109 LLNRQDQFIVHMSFSILAKLACFGL---AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLAD 185 (429)
T ss_pred HHcCCchhHHHHHHHHHHHHHhcCc---cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHcc
Confidence 3345677787778777766543211 1111122333444444444443334567777788888887432 111111
Q ss_pred HHHHHHHHHHHhhcc--hhHHHHHHHHHhHhHhhhChhhHHHHHH--HHHHHHHHHhhcC-CCCc--chHHHHHHHHHhh
Q 000194 279 YREVAEIVLRYLEHR--DRLVRLSITSLLPRIAHFLRDRFVTNYL--KICMNHILTVLRI-PAER--DSGFIALGEMAGA 351 (1880)
Q Consensus 279 ~~~i~~~ll~~~~~~--~~~Vr~~~~~~i~~la~~~~~~f~~~yl--~~~~~~Ll~~L~~-~~~r--~~a~~alg~la~~ 351 (1880)
.+..+...++.. +...+..++-++=.++ |.++ .++ .+ ..+++.+..+++. .++| -.++.++-++...
T Consensus 186 ---~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLS-F~~~-~~~-~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 186 ---GVPTLVKLLSNATLGFQLQYQSIFCIWLLT-FNPH-AAE-VLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred ---CHHHHHHHHhhccccHHHHHHHHHHHHHHh-ccHH-HHH-hhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 223344333322 2334444443333333 2322 222 11 4677777777764 3444 3566667776654
Q ss_pred chh-h-hhhhhhHHHH----HHHHhhcCCCCCCCchHHHHHHHHHHHhCC------CchHHHHHHHHHHHhcCCCHHHHH
Q 000194 352 LDG-E-LFHYLPTITS----HLREAIAPRRGKPSLEALACVGNIARAMGP------VMEPHVRGLLDIMFSAGLSTTLVD 419 (1880)
Q Consensus 352 v~~-~-~~p~l~~i~~----~l~~~l~~~~~~~~~~a~~~l~~la~~~g~------~~~~~l~~ll~~l~~~~ls~~l~~ 419 (1880)
..+ + -..+.+.++. .+.+.|...+ =..+...+-+..+-+.+.+ .|..|..++...-+.+.-.-....
T Consensus 260 ~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk-~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~ 338 (429)
T cd00256 260 RVDREVKKTAALQMVQCKVLKTLQSLEQRK-YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEK 338 (429)
T ss_pred ccccchhhhHHHHHHHcChHHHHHHHhcCC-CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCch
Confidence 311 0 0112222222 1122222111 0112333333333332222 366677776555444421000011
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc-cc--CC
Q 000194 420 ALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF-NF--KG 496 (1880)
Q Consensus 420 ~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~-~~--~~ 496 (1880)
-+.+=+..+..-. -.++..+..+|.. .+|+..++.||.=+|+| .+ .|
T Consensus 339 FW~EN~~kf~~~~----~~llk~L~~iL~~--------------------------s~d~~~laVAc~Dige~vr~~P~g 388 (429)
T cd00256 339 FWRENADRLNEKN----YELLKILIHLLET--------------------------SVDPIILAVACHDIGEYVRHYPRG 388 (429)
T ss_pred HHHHHHHHHHhcc----hHHHHHHHHHHhc--------------------------CCCcceeehhhhhHHHHHHHCccH
Confidence 2222111111100 1223333333211 01334567899999998 22 13
Q ss_pred Ccchhh--HHHHHhhhccCCChHHHHHHHHHHHHhhhcc
Q 000194 497 HDLLEF--ARDSVVLYLDDEDKATRKDAALCCCKLVANS 533 (1880)
Q Consensus 497 ~~l~~~--v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~ 533 (1880)
...... .++.+..++.|++++||..|-.|+.+++...
T Consensus 389 r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~~ 427 (429)
T cd00256 389 KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVHN 427 (429)
T ss_pred HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 322221 4567789999999999999999888876543
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.51 Score=50.60 Aligned_cols=132 Identities=15% Similarity=0.135 Sum_probs=101.6
Q ss_pred hhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccccc-HHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhC---c
Q 000194 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVL-PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNC---E 674 (1880)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~-p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~---~ 674 (1880)
..+..+...+++.+..-|-.++.+++.+++.++..++ ..-...+..++..++.. +....++.++.++..+.... +
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~-~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKP-DPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4566677888999999999999999999999854433 54455555566666665 56777888999998888642 2
Q ss_pred ----ccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHH
Q 000194 675 ----RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEAL 738 (1880)
Q Consensus 675 ----~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l 738 (1880)
+...|.++.+++.+++.+.+ ......++.++..+....+..+.||..++-..+...+
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~-------~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD-------SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 34578899999999998773 3456678889999999999999999999887777654
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.83 E-value=23 Score=47.97 Aligned_cols=134 Identities=17% Similarity=0.157 Sum_probs=94.9
Q ss_pred HHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh-hchhhHHHHHH-HHHHHHHhhccCC
Q 000194 174 VLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK-RETRWRVQWYY-RMFEATQDGLGRN 251 (1880)
Q Consensus 174 ~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~-r~~~~~~~~~~-~~l~~~~~~l~~~ 251 (1880)
-.+|.++++..|..+.+++..+++ .+...+...|.+-.++++......-. .+......-.. .+++.+..++.+-
T Consensus 296 ~~fL~elS~~~P~l~~~~l~~lv~----lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dv 371 (1251)
T KOG0414|consen 296 GNFLVELSERVPKLMLRQLTLLVD----LLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDV 371 (1251)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH----hcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 357788999999999999888887 45566788999988888776543321 12122222222 3677777777776
Q ss_pred CChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh
Q 000194 252 APVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR 313 (1880)
Q Consensus 252 ~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~ 313 (1880)
+ .-+|.-++.++..|.+...... ....++.+.+.+.+.+++..||+.|+.++..+-...|
T Consensus 372 s-a~vRskVLqv~~~l~~~~s~p~-~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 372 S-AYVRSKVLQVFRRLFQQHSIPL-GSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred c-HHHHHHHHHHHHHHHHccCCCc-cHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 4 5678888888888877433222 2566788888888899999999999998887655444
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=94.80 E-value=7.1 Score=48.21 Aligned_cols=330 Identities=12% Similarity=0.103 Sum_probs=154.6
Q ss_pred ChhHHHHHHHHHHHHHHhcCCchhhhHH------hHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHH
Q 000194 701 NNGIISGVLVTVGDLARVGGFGMRQYIS------ELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQL 774 (1880)
Q Consensus 701 ~~~v~~~~~~~l~~La~~~g~~~~~~~~------~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~l 774 (1880)
..++.+.++.-+++|....+....-|.+ .....++..|... +......|...|..++...... .+-...+.+
T Consensus 67 ~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~-d~~i~~~a~~iLt~l~~~~~~~-~~~~~l~~~ 144 (429)
T cd00256 67 KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQ-DQFIVHMSFSILAKLACFGLAK-MEGSDLDYY 144 (429)
T ss_pred cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCC-chhHHHHHHHHHHHHHhcCccc-cchhHHHHH
Confidence 3445555555555555443321111111 1233344455433 5567788888888887654321 111223446
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccc
Q 000194 775 LGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYY 854 (1880)
Q Consensus 775 l~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 854 (1880)
++.+...+++..+.....-++++++.+-..++|+.....
T Consensus 145 ~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~----------------------------------------- 183 (429)
T cd00256 145 FNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL----------------------------------------- 183 (429)
T ss_pred HHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH-----------------------------------------
Confidence 667777776544456666778888887666666531110
Q ss_pred hHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHH-HhCCCCCCCc--chhhHHHHHHHhcCCcc-hhHHHHHHHHHHHHHH
Q 000194 855 STVAINSLMRILRDPSLASYHQKVVGSLMFIFK-SMGLGCVPYL--PKVLPDLFHTVRTCDDY-LKDYITWKLGTLVSIV 930 (1880)
Q Consensus 855 ~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~-~~~~~~~~~l--~~iip~ll~~l~~~~~~-~~~~~~~~l~~lv~~~ 930 (1880)
.-.++.|+.+|+..+. .. +.-.+++..+.. +..+...+.+ ..++|.+.+.++.+... +-..++..+-.++...
T Consensus 184 -~~~v~~L~~~L~~~~~-~~-Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~ 260 (429)
T cd00256 184 -ADGVPTLVKLLSNATL-GF-QLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKR 260 (429)
T ss_pred -ccCHHHHHHHHhhccc-cH-HHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcc
Confidence 0023445555543221 00 112222222221 1111122222 46888888888876522 1112222222333211
Q ss_pred -----HH-hHHHh----HHHHHHHHH-HhhcCCCCCcccccccchhHHHHHHHHHHHhhhh------hhccchhhHHHHH
Q 000194 931 -----RQ-HIRKY----LQELFSLIS-ELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDE------FRTHLPVILPCCI 993 (1880)
Q Consensus 931 -----~~-~i~~y----~~~i~~~i~-~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~------f~~yl~~l~p~ll 993 (1880)
+. ...-. ++.+++.+. ..|... .+..-+..+...+.+. |..|..++..--+
T Consensus 261 ~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~De------------dL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L 328 (429)
T cd00256 261 VDREVKKTAALQMVQCKVLKTLQSLEQRKYDDE------------DLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRL 328 (429)
T ss_pred cccchhhhHHHHHHHcChHHHHHHHhcCCCCcH------------HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCc
Confidence 00 11111 223333332 234322 3455555555555443 5566655554443
Q ss_pred HhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcccccccc-hhHh--HH
Q 000194 994 QVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTG-HISS--LV 1070 (1880)
Q Consensus 994 ~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~~~~~~-~~~~--ii 1070 (1880)
+ ++..++++. ....-...+++.-..++-.+..+++.+..+.+-..|+--+|.+++.....- .+.. .-
T Consensus 329 ~-WSp~H~se~---------FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K 398 (429)
T cd00256 329 H-WSPVHKSEK---------FWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGK 398 (429)
T ss_pred c-CCCCCCCch---------HHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcH
Confidence 1 221111111 011111123333355667777777544333333556677777776532111 1111 11
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 000194 1071 HHLKLVLDGKNDELRKDAVDALCCLAHA 1098 (1880)
Q Consensus 1071 ~~l~~~l~~~~~~l~~~al~~L~~l~~~ 1098 (1880)
..+.+.++.+|+++|..|+.++..|+.+
T Consensus 399 ~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 399 QRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 2234677788999999999999877543
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.88 Score=49.03 Aligned_cols=164 Identities=22% Similarity=0.267 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhhhcC-CcccccHHHHHHHHH-----------HHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchH
Q 000194 615 VREYAISVAGRLSEK-NPAYVLPALRRHLIQ-----------LLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIA 682 (1880)
Q Consensus 615 VR~~a~~~l~~l~~~-~p~~v~p~l~~~l~~-----------~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~ 682 (1880)
||..|+.+|..+++. .|..+..+...++.+ +++.+..+ ++++.|..|+.++..+.+..+ +|+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~D-p~~kvR~aA~~~l~~lL~gsk----~~L~ 76 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKD-PSPKVRAAAASALAALLEGSK----PFLA 76 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcC-CchhHHHHHHHHHHHHHHccH----HHHH
Confidence 788899999998888 444444444333322 34555556 788999999999999988753 3322
Q ss_pred HHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcC
Q 000194 683 PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTG 762 (1880)
Q Consensus 683 ~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~ 762 (1880)
. ..+... ...++.. .-.++|.+ +.++=..++..++.+.+...-...+++|+.+++.+.
T Consensus 77 ~--------Ae~~~~--~~~sFts-lS~tLa~~-----------i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tP 134 (182)
T PF13251_consen 77 Q--------AEESKG--PSGSFTS-LSSTLASM-----------IMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATP 134 (182)
T ss_pred H--------HHhcCC--CCCCccc-HHHHHHHH-----------HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCC
Confidence 1 222110 0111111 01122222 233444566667655555555677899999998876
Q ss_pred cccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCc
Q 000194 763 YVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDP 806 (1880)
Q Consensus 763 ~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp 806 (1880)
|.=-+-...++++..+...+.+ .+..+|.+++-++|.+-+..|
T Consensus 135 Y~rL~~~ll~~~v~~v~~~l~~-~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 135 YHRLPPGLLTEVVTQVRPLLRH-RDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred hhhcCHhHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCC
Confidence 5421222345666666666654 467899999999998866543
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.047 Score=39.88 Aligned_cols=30 Identities=30% Similarity=0.437 Sum_probs=25.6
Q ss_pred hHHHHHHHhCCCCHhHHHHHHHHHHhhhcC
Q 000194 600 CLSAIFAALNDEDFDVREYAISVAGRLSEK 629 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~ 629 (1880)
+++.+..+++|++++||.+|+..+|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 367888999999999999999999998864
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=94.38 E-value=16 Score=46.11 Aligned_cols=61 Identities=15% Similarity=-0.017 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHH--HhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000194 1570 ETWLKFASLCRKSGRISQARSTLVK--LLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1880)
Q Consensus 1570 ~~~lk~a~laRk~g~~~~a~~~L~~--l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~ 1644 (1880)
....-++.++-+.|+++.|...+.+ .....| .+......+.++|..|+ ..+|.++.++.+.
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-----------~~~~~~~La~ll~~~g~---~~~A~~~~~~~l~ 398 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQL-----------DANDLAMAADAFDQAGD---KAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 6677899999999999999999984 444433 24556689999999996 5788888776543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.23 Score=48.29 Aligned_cols=91 Identities=14% Similarity=0.238 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHHHhhcCCC------CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHH
Q 000194 315 RFVTNYLKICMNHILTVLRIPA------ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGN 388 (1880)
Q Consensus 315 ~f~~~yl~~~~~~Ll~~L~~~~------~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~ 388 (1880)
+|.++++=.++..+-..+.+.+ +|..++.+++.+....|+.+..+.|+|+..++.+|..+ +.+..++.||..
T Consensus 3 ~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~--eL~~~al~~W~~ 80 (107)
T smart00802 3 DFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP--ELRSLALRCWHV 80 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHH
Confidence 3555565566666666665432 47789999999999999889999999999999999543 445789999999
Q ss_pred HHHHhCC-CchHHHHHHHHH
Q 000194 389 IARAMGP-VMEPHVRGLLDI 407 (1880)
Q Consensus 389 la~~~g~-~~~~~l~~ll~~ 407 (1880)
+...+.+ ++.|.++.++-.
T Consensus 81 ~i~~L~~~~l~~ll~~~~~~ 100 (107)
T smart00802 81 LIKTLKEEELGPLLDQIFAA 100 (107)
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 9999886 455555544433
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=13 Score=52.21 Aligned_cols=158 Identities=15% Similarity=0.114 Sum_probs=75.9
Q ss_pred HHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch---hh---hhhcH
Q 000194 1288 IRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE---LD---VQLKE 1361 (1880)
Q Consensus 1288 ~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~---~~---~~~~~ 1361 (1880)
+..|.....+||.+..|+..++.-.... ..+ ...++..|+..|.+.|+.|.+..++...... ++ .....
T Consensus 475 ynsLI~~y~k~G~vd~A~~vf~eM~~~G----v~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI 549 (1060)
T PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAG----VEA-NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 549 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4455555666666666665554322111 011 2345666777777777777666666543210 00 11111
Q ss_pred HHHHHhcCHHHHHHHHHHHHhc--cCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCC-ChHHHHhHHHHHHHHHH
Q 000194 1362 SWYEKLQRWDDALKAYTNKASQ--ASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPA-EPAARLEMAPMAANAAW 1438 (1880)
Q Consensus 1362 ~~~e~lg~W~~Al~~y~~~~~~--~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~-~~~~~~~~~~~~a~aaw 1438 (1880)
..|-+.|++++|++.|+..... .-.|+ ......++.+|.+.|+++......+...... .+. .........+.-
T Consensus 550 ~a~~k~G~~deA~~lf~eM~~~~~gi~PD--~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~--~~tynsLI~ay~ 625 (1060)
T PLN03218 550 SACGQSGAVDRAFDVLAEMKAETHPIDPD--HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT--PEVYTIAVNSCS 625 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHH
Confidence 2356667777777776654321 11222 1234456666666777665555544322110 000 011122334555
Q ss_pred HcCChhhHHHHHhhcC
Q 000194 1439 NMGEWDQMAEYVSRLD 1454 (1880)
Q Consensus 1439 ~l~~Wd~~~~~~~~~~ 1454 (1880)
+.|+|+...++...|.
T Consensus 626 k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 626 QKGDWDFALSIYDDMK 641 (1060)
T ss_pred hcCCHHHHHHHHHHHH
Confidence 5666666666555543
|
|
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.23 Score=48.66 Aligned_cols=92 Identities=16% Similarity=0.249 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHhhcC--C----CCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHH
Q 000194 316 FVTNYLKICMNHILTVLRI--P----AERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNI 389 (1880)
Q Consensus 316 f~~~yl~~~~~~Ll~~L~~--~----~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~l 389 (1880)
|.++++=.++.++-..+.+ . .+|..++.+|+.+....|+.+.++.|+|+..++.++..+ +.+..++.||..+
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~f 81 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHH
Confidence 5555555566666666544 1 157899999999999888888899999999999999554 4457899999999
Q ss_pred HHHhCC-CchHHHHHHHHHHH
Q 000194 390 ARAMGP-VMEPHVRGLLDIMF 409 (1880)
Q Consensus 390 a~~~g~-~~~~~l~~ll~~l~ 409 (1880)
.+.+++ ++.|+++.++-.++
T Consensus 82 i~~L~~~~l~~ll~~~~~~l~ 102 (107)
T PF08064_consen 82 IKTLDEEDLGPLLDQIFAILL 102 (107)
T ss_pred HHHCCHHHHHHHHHHHHHHHH
Confidence 999986 56777766554443
|
; GO: 0004674 protein serine/threonine kinase activity |
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=93.94 E-value=1.1 Score=48.18 Aligned_cols=135 Identities=19% Similarity=0.155 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcc-hhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCC
Q 000194 66 FMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGEN-ASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGA 144 (1880)
Q Consensus 66 ~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~-~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~ 144 (1880)
.++.+..++.++++|++...|-.|+..+..+++..+.+. .+....|...|..++...++..+.+.+..++.+|....+.
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 445567788899999999999999999999987642221 2344566667777776555678899999999999775222
Q ss_pred C---chh----HHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHh
Q 000194 145 M---TAD----EVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL 203 (1880)
Q Consensus 145 ~---~~~----~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l 203 (1880)
. .-+ .+...++.+++.+++ ......++.+|..+..+-|+.|.|+.+++-..+...+
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 2 112 233344444444432 3456788999999999999999999999887776543
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=93.89 E-value=7.4 Score=46.51 Aligned_cols=127 Identities=17% Similarity=0.239 Sum_probs=87.9
Q ss_pred HHHHHHHHhCcccccCc--hHHHHHHHH-HHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhc
Q 000194 664 KLLGCLIRNCERLIRPY--IAPIHKALV-ARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD 740 (1880)
Q Consensus 664 ~~L~~l~~~~~~~~~py--~~~il~~ll-~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d 740 (1880)
.+...+.+.....+.|. +..+++.++ |.++.. ++.++..++.|+|-.+-... ....+.++.+...++.
T Consensus 5 ~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~-----~~~vR~~al~cLGl~~Lld~----~~a~~~l~l~~~~~~~ 75 (298)
T PF12719_consen 5 SITQSLLENVSSSLSPNISLESLLDSLILPAVQSS-----DPAVRELALKCLGLCCLLDK----ELAKEHLPLFLQALQK 75 (298)
T ss_pred HHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHhCh----HHHHHHHHHHHHHHHh
Confidence 34455555555445553 347776655 777764 77999999999998876554 3445666677777754
Q ss_pred CCchhhHHHHHHHHHHHHhhcCccc-ccCC------cchHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000194 741 GAAVTKREVAVSTLGQVVQSTGYVI-TPYN------EYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 741 ~~~~~~r~~Al~~Lg~l~~~~~~~i-~p~~------~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~l 801 (1880)
. +..+|..|++++..++...|..+ .... ....+++.+.+.+.++ +++++..+...+..+
T Consensus 76 ~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 76 D-DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKL 141 (298)
T ss_pred C-CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 3 67899999999999998888653 2222 1356888899998776 677887777666554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=1.3 Score=49.39 Aligned_cols=137 Identities=11% Similarity=0.069 Sum_probs=90.2
Q ss_pred HHHHHHHhhccC----CHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCC
Q 000194 1536 NMWTERIQGTKR----NVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHG 1611 (1880)
Q Consensus 1536 ~~W~~Rl~~~~~----~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 1611 (1880)
..|.+|+..-.. .-+.-+-+...+..+-...++.+.|..++.+....|+++.|..++.++..++|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~---------- 105 (198)
T PRK10370 36 RAEYQRLADPLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE---------- 105 (198)
T ss_pred HHHHHHHhCccccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------
Confidence 456666543221 122233444556555434467999999999999999999999999999988763
Q ss_pred ChHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCC
Q 000194 1612 PPQVMYAYLKYQWSL-GEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLD 1690 (1880)
Q Consensus 1612 ~~~v~~~~ak~lw~~-g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~ 1690 (1880)
.+.+...++..+|.+ |+. ...+|...+++.+..-..+ ..-.-++|.++...|+
T Consensus 106 ~~~~~~~lA~aL~~~~g~~-~~~~A~~~l~~al~~dP~~---------------~~al~~LA~~~~~~g~---------- 159 (198)
T PRK10370 106 NAELYAALATVLYYQAGQH-MTPQTREMIDKALALDANE---------------VTALMLLASDAFMQAD---------- 159 (198)
T ss_pred CHHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCCC---------------hhHHHHHHHHHHHcCC----------
Confidence 478888999987655 431 1368999998876532110 1112234444444444
Q ss_pred CCCHHHHHHHHHHHHhhcccc
Q 000194 1691 DESIPEIIAAYRNATQCATKW 1711 (1880)
Q Consensus 1691 ~~~~~~i~~~y~~a~~~~~~~ 1711 (1880)
.++.+.+|+++.+..|..
T Consensus 160 ---~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 160 ---YAQAIELWQKVLDLNSPR 177 (198)
T ss_pred ---HHHHHHHHHHHHhhCCCC
Confidence 577889999998887753
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=93.72 E-value=6.4 Score=47.23 Aligned_cols=195 Identities=17% Similarity=0.166 Sum_probs=110.1
Q ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhhh-CCCC---chhHHHHHHHHHHhhhc-CCCcchhHHHHHHHHHHHHhhcC-
Q 000194 112 SNYMRTVFEVKRDREILVLASKVLGHLARA-GGAM---TADEVEFQVKMALDWLR-GDRVEYRRFAAVLILKEMAENAS- 185 (1880)
Q Consensus 112 ~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~-~g~~---~~~~v~~~~~~~~~~l~-~~~~~~~R~aA~~~l~~la~~~p- 185 (1880)
...|-..++ .-|.+.++.++..++.+... .|+. ..+++....+.++.+|- +......-.-+-.+|++.+.+-+
T Consensus 78 l~~Li~~L~-~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l 156 (335)
T PF08569_consen 78 LYLLIRNLP-KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESL 156 (335)
T ss_dssp HHHHHHTGG-GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHhh-hCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHH
Confidence 334555554 45899999999999999875 2332 35566655556666653 32222222333345566554411
Q ss_pred -c-cchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHH
Q 000194 186 -T-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLA 263 (1880)
Q Consensus 186 -~-~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~ 263 (1880)
. .+. ++.+..++.-+..|+-.|-..|...++.++..-..--...-...|..++.....-+.++ ...++.-|+..
T Consensus 157 ~~~iL~---~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtkrqslkL 232 (335)
T PF08569_consen 157 AKIILY---SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTKRQSLKL 232 (335)
T ss_dssp HHHHHT---SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHHHHHHHH
T ss_pred HHHHhC---cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEeehhhHHH
Confidence 1 121 22333345667788888844444444443321000001122233555665444445555 48889999999
Q ss_pred HHHHHHc--chhhhHHHHHH--HHHHHHHHhhcchhHHHHHHHHHhHhHhhh
Q 000194 264 VGELLRN--TGEFMMSRYRE--VAEIVLRYLEHRDRLVRLSITSLLPRIAHF 311 (1880)
Q Consensus 264 l~~ll~~--~~~~~~~~~~~--i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~ 311 (1880)
||+++.. ....|..|+.+ -+..++.++++++..||-.+.++.....+.
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 9999873 34567776654 456777888999999999999999876654
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.66 E-value=17 Score=46.77 Aligned_cols=203 Identities=22% Similarity=0.284 Sum_probs=116.7
Q ss_pred HhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccc-ccHHHHHHHHHHHHHHhcCC--CChHhHHHHHHHHHHHHHhC-
Q 000194 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY-VLPALRRHLIQLLTYLEQSS--ADNKCREESAKLLGCLIRNC- 673 (1880)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~-v~p~l~~~l~~~l~~l~~~~--~~~~~r~~a~~~L~~l~~~~- 673 (1880)
|.-+..++..+.|....||..++-+|..+++.||.. =+-.+......++..++... ...-+-+.++.+|-.+.+..
T Consensus 165 P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 165 PMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred chhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence 345778888899999999999999999999999752 01223333334444444331 12345677888888888753
Q ss_pred --ccccc--CchHHHHHHHHHH-hccCCCCCCChhHHHHHH---HHHHHHHHhcCCchhh-------hHHhHHHHHHHHH
Q 000194 674 --ERLIR--PYIAPIHKALVAR-LLEGTGINANNGIISGVL---VTVGDLARVGGFGMRQ-------YISELMPLIVEAL 738 (1880)
Q Consensus 674 --~~~~~--py~~~il~~ll~~-l~~~~~~~~~~~v~~~~~---~~l~~La~~~g~~~~~-------~~~~l~p~l~~~l 738 (1880)
..+|+ .|++.+...|--. ..++....=++.-..++. ..+..++.-+...-.. .-..++..++..+
T Consensus 245 SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il 324 (970)
T KOG0946|consen 245 SNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTIL 324 (970)
T ss_pred chhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHH
Confidence 23444 4565544332111 122100000122223333 3333343322111111 1224677777776
Q ss_pred hcC-CchhhHHHHHHHHHHHHhhcC-------cccccCCc--chHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000194 739 LDG-AAVTKREVAVSTLGQVVQSTG-------YVITPYNE--YPQLLGLLLKMLNGELVWSTRREVLKVLGI 800 (1880)
Q Consensus 739 ~d~-~~~~~r~~Al~~Lg~l~~~~~-------~~i~p~~~--~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~ 800 (1880)
..+ -..+++..++-+++.++++.. .+..|+.. .|.++=.++.+.........|.+++.|+-.
T Consensus 325 ~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s 396 (970)
T KOG0946|consen 325 MHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRS 396 (970)
T ss_pred cCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHH
Confidence 543 345677788888888877642 23456654 466777777777666678999999998754
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.65 E-value=33 Score=45.28 Aligned_cols=128 Identities=19% Similarity=0.198 Sum_probs=83.5
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHH
Q 000194 248 LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNH 327 (1880)
Q Consensus 248 l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~ 327 (1880)
+.+.++.+.+.|.=.++..+ ..|+.|...|.+++..+ ..++.++++.+--=+-.+|+..|+.. --.++.
T Consensus 28 l~s~n~~~kidAmK~iIa~M--~~G~dmssLf~dViK~~----~trd~ElKrL~ylYl~~yak~~P~~~-----lLavNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQM--SLGEDMSSLFPDVIKNV----ATRDVELKRLLYLYLERYAKLKPELA-----LLAVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHH--hcCCChHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHhccCHHHH-----HHHHHH
Confidence 55544334344433333333 34555666666655544 47899999988777777777776432 223444
Q ss_pred HHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHH
Q 000194 328 ILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1880)
Q Consensus 328 Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~ 392 (1880)
+..-+..++ -|+.|++++|.+ .+...++.+++.|++.+.+..+.++..|.-|++.+-+.
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l------~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLL------RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhc------ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 455555444 489999999886 22346677888899999888777778888898887764
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.54 E-value=1.6 Score=51.06 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=95.5
Q ss_pred HHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHH-HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccC
Q 000194 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1880)
Q Consensus 601 l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1880)
+..+...+++.+.++|..|..++|..+.+||..-...+. ..+..++..+..+ ++...|..|+-+++.++++.+.....
T Consensus 126 l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~-~~~~~r~kaL~AissLIRn~~~g~~~ 204 (342)
T KOG2160|consen 126 LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD-DPNTVRTKALFAISSLIRNNKPGQDE 204 (342)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC-CCchHHHHHHHHHHHHHhcCcHHHHH
Confidence 444455889999999999999999999999964322221 1233344445544 56677889999999999987655443
Q ss_pred chH-HHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 000194 680 YIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVV 758 (1880)
Q Consensus 680 y~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~ 758 (1880)
|.. .=...|.+.+.+++ .+..+..-++.-++.+.......-.-.-...++..+..+....+.+.++.|+.++-...
T Consensus 205 fl~~~G~~~L~~vl~~~~---~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 205 FLKLNGYQVLRDVLQSNN---TSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHhcCCHHHHHHHHHcCC---cchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 322 11456666676631 24445555555666665433222222233445555555554445678888877766555
Q ss_pred hh
Q 000194 759 QS 760 (1880)
Q Consensus 759 ~~ 760 (1880)
..
T Consensus 282 ~~ 283 (342)
T KOG2160|consen 282 SE 283 (342)
T ss_pred HH
Confidence 43
|
|
| >PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes | Back alignment and domain information |
|---|
Probab=93.11 E-value=2.7 Score=47.53 Aligned_cols=150 Identities=22% Similarity=0.215 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCC
Q 000194 45 LALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRD 124 (1880)
Q Consensus 45 ~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d 124 (1880)
-.++.+.....++...+ ++......++.++.....|..|+..++...... + .....++...++..++
T Consensus 33 p~lr~lak~~~~~~~~~------~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~--~-----~~~~~~~~~~~~~~~~ 99 (213)
T PF08713_consen 33 PDLRKLAKDIYKELKLS------EELYELADELWESGYREERYLALLILDKRRKKL--T-----EEDLELLEKWLPDIDN 99 (213)
T ss_dssp HHHHHHHHHHHHHHCTS------HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG---------HHHHHHHHHCCCCCCC
T ss_pred HHHHHHHHHHHhhcccc------hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhh--h-----HHHHHHHHHHhccCCc
Confidence 34666666666665544 334445557888888888888888887765332 1 1255677777775556
Q ss_pred hHHHHHH-HHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHh
Q 000194 125 REILVLA-SKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL 203 (1880)
Q Consensus 125 ~~v~~~a-a~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l 203 (1880)
-.+.+.. ..+++.+.... +...+.+.+|+.++..+.+|.+.+..+..... .++..++..+-..+
T Consensus 100 W~~~D~~~~~~~~~~~~~~--------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~-------~~~~~~l~~~~~~~ 164 (213)
T PF08713_consen 100 WATCDSLCSKLLGPLLKKH--------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK-------EDFDELLEIIEALL 164 (213)
T ss_dssp HHHHHHHTHHHHHHHHHHH--------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG-------CHHHHHHHHHHHCT
T ss_pred chhhhHHHHHHHHHHHHhh--------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHc
Confidence 6777766 56677765431 23466788999988888888776665443322 67788888888999
Q ss_pred cCCchhHHHHHHHHHHHHH
Q 000194 204 RDPTLAVRERAVEALRACL 222 (1880)
Q Consensus 204 ~D~~~~VR~aA~~al~~~~ 222 (1880)
.|++..||.+...+|+.+.
T Consensus 165 ~d~~~~vq~ai~w~L~~~~ 183 (213)
T PF08713_consen 165 KDEEYYVQKAIGWALREIG 183 (213)
T ss_dssp TGS-HHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A. |
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=93.09 E-value=10 Score=44.10 Aligned_cols=234 Identities=16% Similarity=0.189 Sum_probs=131.2
Q ss_pred CCcchhHHHHHHHHHHHHhhcCc-cch-hchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 000194 164 DRVEYRRFAAVLILKEMAENAST-VFN-VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMF 241 (1880)
Q Consensus 164 ~~~~~~R~aA~~~l~~la~~~p~-~l~-~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l 241 (1880)
+.++..|..|+.+|..+.+..|. .+. ..+.-+++-....|.|.. .+..+ ..++.++... . .........++
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~~-l~gl~~L~~~-~----~~~~~~~~~i~ 82 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQPA-LKGLLALVKM-K----NFSPESAVKIL 82 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHHH-HHHHHHHHhC-c----CCChhhHHHHH
Confidence 34667899999999999999885 343 467777777778886554 34444 5555554421 1 11122234444
Q ss_pred HHHHhhccCCC-ChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh-hcchhHHHHHHHHHhHhHh-hhChhhHHH
Q 000194 242 EATQDGLGRNA-PVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL-EHRDRLVRLSITSLLPRIA-HFLRDRFVT 318 (1880)
Q Consensus 242 ~~~~~~l~~~~-~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~-~~~~~~Vr~~~~~~i~~la-~~~~~~f~~ 318 (1880)
..+.+...-+. ....|.....++..+++...+.+...-++.+..++... ..++|.--..+..+++.+. .+...+|.+
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e 162 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAE 162 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHH
Confidence 44443222111 23568888889998888655444333334444454444 3467766666777777664 344455555
Q ss_pred HHHHHHHHHHHHhhcCCC-C-----cchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHH
Q 000194 319 NYLKICMNHILTVLRIPA-E-----RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1880)
Q Consensus 319 ~yl~~~~~~Ll~~L~~~~-~-----r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~ 392 (1880)
.+++.+.-|.=-..+.+. + |..--.+|..- ..... .|-+..++.+.+-|..........+++++...+..
T Consensus 163 ~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~c-l~s~~---~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 163 DLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNC-LSSTP---LFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHH-hcCcH---hhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 554444433222233222 1 11111111111 11111 24456667777777554444456788888888889
Q ss_pred hCC-CchHHHHHHHHHH
Q 000194 393 MGP-VMEPHVRGLLDIM 408 (1880)
Q Consensus 393 ~g~-~~~~~l~~ll~~l 408 (1880)
+|. .+.||+..+-..|
T Consensus 239 y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 239 YGADSLSPHWSTIWNAL 255 (262)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 987 5788887766554
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.57 Score=53.17 Aligned_cols=148 Identities=14% Similarity=0.170 Sum_probs=105.6
Q ss_pred hHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccC
Q 000194 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1880)
.|...+..|.+++++..-.++..+.+|+.++|..+.+.|.++++..+.++++- -+.+-..|+.+++++.......+..
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNl--RS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNL--RSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778888899999999999999999999999999999999999988764 3344567888999999888766655
Q ss_pred chHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 000194 680 YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQ 759 (1880)
Q Consensus 680 y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~ 759 (1880)
-.+..+..|+.+...+ +.-++..+-.+|..|...... ..+++.++..++.. ...+|..+..++...+.
T Consensus 167 ~ld~lv~~Ll~ka~~d-----nrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~-n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQD-----NRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHS-NPRVRAKAALCFSRCVI 234 (334)
T ss_pred HHHHHHHHHHhhhccc-----chHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhh-chhhhhhhhccccccce
Confidence 5555555555554442 556777888888887764332 24566666666654 34566555555444443
Q ss_pred hc
Q 000194 760 ST 761 (1880)
Q Consensus 760 ~~ 761 (1880)
..
T Consensus 235 rl 236 (334)
T KOG2933|consen 235 RL 236 (334)
T ss_pred ec
Confidence 33
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.80 E-value=2.1 Score=52.05 Aligned_cols=155 Identities=21% Similarity=0.261 Sum_probs=107.6
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHh
Q 000194 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSS 584 (1880)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1880)
+.+..++.+.++-.|-..+.+++..+.-. + . ..++..|+..+++|.+.+||.+++-+
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GT-----------------g--n----~~vv~~lLh~avsD~nDDVrRAAViA 575 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGT-----------------G--N----LGVVSTLLHYAVSDGNDDVRRAAVIA 575 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcC-----------------C--c----chhHhhhheeecccCchHHHHHHHHh
Confidence 34455666777788876666655444211 0 0 23556677788999999999999999
Q ss_pred ccCCCCcchhhccHhhHHHHHHHhCCC-CHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHH
Q 000194 585 LYGNRGFDDFLAQADCLSAIFAALNDE-DFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESA 663 (1880)
Q Consensus 585 l~~~~~fd~~L~~~~~l~~L~~~l~D~-~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~ 663 (1880)
|+- .+|+. ++.+......|.|. ++.||-.+.-.||-.+...+. +.-..+|..|.++ ...-+|+.|+
T Consensus 576 lGf-vc~~D----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~-------~~a~diL~~L~~D-~~dfVRQ~Am 642 (926)
T COG5116 576 LGF-VCCDD----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD-------KVATDILEALMYD-TNDFVRQSAM 642 (926)
T ss_pred eee-eEecC----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc-------HHHHHHHHHHhhC-cHHHHHHHHH
Confidence 862 22322 24455555555554 789999988899877765543 2344556666666 5667888898
Q ss_pred HHHHHHHHhCcccccCchHHHHHHHHHHhccC
Q 000194 664 KLLGCLIRNCERLIRPYIAPIHKALVARLLEG 695 (1880)
Q Consensus 664 ~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~ 695 (1880)
-.++.+.-.+.+.+-|-+..|...+.+.+.+.
T Consensus 643 Ia~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 643 IAVGMILMQCNPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred HHHHHHHhhcCcccChhHHHHHHHHHHHHhhh
Confidence 89999988888888888899999888888764
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=46 Score=48.87 Aligned_cols=359 Identities=11% Similarity=0.094 Sum_probs=185.7
Q ss_pred HHHHHHHHHhhhcCCcccc---cHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcc--ccc--CchHHHHHHH
Q 000194 616 REYAISVAGRLSEKNPAYV---LPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCER--LIR--PYIAPIHKAL 688 (1880)
Q Consensus 616 R~~a~~~l~~l~~~~p~~v---~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~--~~~--py~~~il~~l 688 (1880)
|.-.+.-|..++.+|...+ .+.+..++.+.+...... .+...+..|+..|..++-..-+ -+. .+-..++..+
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~-~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPf 1187 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCS-ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF 1187 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHH
Confidence 4444555555566665432 233334444444433222 2345556666666666643221 111 1223566766
Q ss_pred HHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCccc--c
Q 000194 689 VARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVI--T 766 (1880)
Q Consensus 689 l~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i--~ 766 (1880)
...+... .+..++..++.|+..|....++.+..=-..++.++-.+..+.+ ...-..|..++..++...-..+ .
T Consensus 1188 e~im~~s----~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~-e~iV~lAFetl~~I~~d~f~~l~~~ 1262 (1780)
T PLN03076 1188 VIVMRKS----NAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDH-KNIVLLAFEIIEKIIREYFPYITET 1262 (1780)
T ss_pred HHHHHhc----CchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHHHhhhhhcccc
Confidence 6666643 3678999999999999888777777777777777777776543 3344578888888775432222 1
Q ss_pred cCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcc-c--CccchhhccccCCCcccccccCCCCCCCCCCCccccccc
Q 000194 767 PYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA-L--DPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDL 843 (1880)
Q Consensus 767 p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lga-l--dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 843 (1880)
+..-+..++.+|.++.+...+..+-..++..+..++. + .+.... ......+...+.+.... ...... ..+
T Consensus 1263 ~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~----~~~~~~~~~~~~s~~~~--~~~~~~-~~~ 1335 (1780)
T PLN03076 1263 ETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSS----SRNKDKEAPPSSPQSGK--DGKQES-GEF 1335 (1780)
T ss_pred chhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccc----ccccccccccccccccc--cccccc-ccc
Confidence 2345667888888888655455666666666655431 0 110000 00000000000000000 000000 000
Q ss_pred CCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCC-C----cchhhHHHHHHHhcC-------
Q 000194 844 WPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVP-Y----LPKVLPDLFHTVRTC------- 911 (1880)
Q Consensus 844 ~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~-~----l~~iip~ll~~l~~~------- 911 (1880)
........+| -.++..|..+..|+.+ +++..+++++-.|+..-|..+.| + +.+++..++..++..
T Consensus 1336 -~~~~~~~~lW-~pLL~~Ls~l~~D~Rl-EVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~ 1412 (1780)
T PLN03076 1336 -TDKDDHLYFW-FPLLAGLSELSFDPRP-EIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGD 1412 (1780)
T ss_pred -ccchhHHHHH-HHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 0000001122 2345566666667654 56778999999999999988765 3 466777777777532
Q ss_pred ----------Cc--c----hhHHHHHHHHHHHHHHHHh---HHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHH
Q 000194 912 ----------DD--Y----LKDYITWKLGTLVSIVRQH---IRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQ 972 (1880)
Q Consensus 912 ----------~~--~----~~~~~~~~l~~lv~~~~~~---i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~ 972 (1880)
++ . +.+.....|..+++.+.++ +.++++.++.++.......+. .+...-..++..
T Consensus 1413 ~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~------~la~ig~~~l~~ 1486 (1780)
T PLN03076 1413 EPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQ------SLAGIGIAAFVR 1486 (1780)
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH------HHHHHHHHHHHH
Confidence 00 1 2344444555555555544 345667777666655443320 011123555555
Q ss_pred HHHHhhhhhhc-cchhhHHHHHHhc
Q 000194 973 LCLALNDEFRT-HLPVILPCCIQVL 996 (1880)
Q Consensus 973 l~~~l~~~f~~-yl~~l~p~ll~~l 996 (1880)
+...-+..|.+ .+..++..+.+.+
T Consensus 1487 li~~ng~~F~~~~W~~i~~~~~~lf 1511 (1780)
T PLN03076 1487 LMSNAGHLFSDEKWLEVVLSLKEAA 1511 (1780)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHH
Confidence 55555555554 3444444444443
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.63 E-value=1.6 Score=49.80 Aligned_cols=140 Identities=16% Similarity=0.140 Sum_probs=94.4
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHH
Q 000194 243 ATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLK 322 (1880)
Q Consensus 243 ~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~ 322 (1880)
.+...|.+. +|+..-.++-.+..|.+...+.+.+.+.+++-.|+.-+.+....|-+++|-+++.+..+-.... .
T Consensus 92 ~~l~~L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i-----~ 165 (334)
T KOG2933|consen 92 QALKKLSSD-DWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI-----D 165 (334)
T ss_pred HHHHHhchH-HHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence 344455554 5988888888899888877788999999999989888888888899999999998876544322 2
Q ss_pred HHHHHHHHhh-cCC-C----CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhC
Q 000194 323 ICMNHILTVL-RIP-A----ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMG 394 (1880)
Q Consensus 323 ~~~~~Ll~~L-~~~-~----~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g 394 (1880)
+.+..++.+| .+. . .|..|-.+|-.+...+.. ..++..++.++...+++.+..+..|+......+|
T Consensus 166 ~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 166 QELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 2333333332 222 1 267788888877766654 2244555555655555555566677777666665
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=92.61 E-value=42 Score=43.60 Aligned_cols=187 Identities=17% Similarity=0.184 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhCcc-cccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH-HhHHHHHHHH
Q 000194 660 EESAKLLGCLIRNCER-LIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVEA 737 (1880)
Q Consensus 660 ~~a~~~L~~l~~~~~~-~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~l~p~l~~~ 737 (1880)
.-|..+|..++. -++ ...|-+..-++.++..+.... ...+...++.++..++..- +.-...+ ...+|.+++.
T Consensus 75 ~LavsvL~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s----~~~~v~dalqcL~~Ias~~-~G~~aLl~~g~v~~L~ei 148 (543)
T PF05536_consen 75 SLAVSVLAAFCR-DPELASSPQMVSRIPLLLEILSSSS----DLETVDDALQCLLAIASSP-EGAKALLESGAVPALCEI 148 (543)
T ss_pred HHHHHHHHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCC----chhHHHHHHHHHHHHHcCc-HhHHHHHhcCCHHHHHHH
Confidence 345556666654 222 223556677888888887652 3366777788887777322 1111111 3567788887
Q ss_pred HhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcccCccchhhccc
Q 000194 738 LLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGE---LVWSTRREVLKVLGIMGALDPHAHKRNQQ 814 (1880)
Q Consensus 738 l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~---~~~~vr~~~l~~lg~lgaldp~~~~~~~~ 814 (1880)
+.+ .....+.|+..+..++...+... ..+.+..+..++..+... .....+-+.+..++.+ -|...
T Consensus 149 ~~~--~~~~~E~Al~lL~~Lls~~~~~~--~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~---L~~~~----- 216 (543)
T PF05536_consen 149 IPN--QSFQMEIALNLLLNLLSRLGQKS--WAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAF---LPRSP----- 216 (543)
T ss_pred HHh--CcchHHHHHHHHHHHHHhcchhh--hhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHh---cCcCC-----
Confidence 765 34568899999998888766432 223344444444433221 1234455555555443 11110
Q ss_pred cCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCC
Q 000194 815 LSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG 892 (1880)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~ 892 (1880)
.. + . ......-+...+...|..+|+..-....+..+......++...|..
T Consensus 217 --------------~~----~-----~-----~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 217 --------------IL----P-----L-----ESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred --------------cc----c-----c-----ccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 00 0 0 0011122456777888899987655555566777777777777764
|
|
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.49 Score=46.07 Aligned_cols=89 Identities=21% Similarity=0.345 Sum_probs=68.5
Q ss_pred HHHHHHhcCCC---hhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHH-HHhHH
Q 000194 860 NSLMRILRDPS---LASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV-RQHIR 935 (1880)
Q Consensus 860 ~~Ll~~L~d~s---~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~-~~~i~ 935 (1880)
+..-..+.|.+ ....+..++.++..+++..|.....+++||+-.+...++ .++++...+.....++..+ ..++.
T Consensus 14 ~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l~ 91 (107)
T smart00802 14 AVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEELG 91 (107)
T ss_pred HHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHHH
Confidence 33344455554 234467899999999998776566677777777777775 4569999999999999887 46899
Q ss_pred HhHHHHHHHHHHhhc
Q 000194 936 KYLQELFSLISELWS 950 (1880)
Q Consensus 936 ~y~~~i~~~i~~~~~ 950 (1880)
|.++.++..+..+|.
T Consensus 92 ~ll~~~~~~i~~~~~ 106 (107)
T smart00802 92 PLLDQIFAAILPLWP 106 (107)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999999986
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.52 Score=46.25 Aligned_cols=87 Identities=14% Similarity=0.263 Sum_probs=64.2
Q ss_pred HHHHhcC---CChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHH-HhHHHh
Q 000194 862 LMRILRD---PSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVR-QHIRKY 937 (1880)
Q Consensus 862 Ll~~L~d---~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~-~~i~~y 937 (1880)
+-..+.| ......+..++.++..+++..|....++.+||+-.+...++. +++++..+.....++..+. .++.|+
T Consensus 16 f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~--~~l~~~al~~W~~fi~~L~~~~l~~l 93 (107)
T PF08064_consen 16 FSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI--PELREEALSCWNCFIKTLDEEDLGPL 93 (107)
T ss_pred HHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHHCCHHHHHHH
Confidence 3344444 333355678999999999955544455666666666555544 4789999999999999884 688999
Q ss_pred HHHHHHHHHHhhc
Q 000194 938 LQELFSLISELWS 950 (1880)
Q Consensus 938 ~~~i~~~i~~~~~ 950 (1880)
++.++..+..+|.
T Consensus 94 l~~~~~~l~~~~~ 106 (107)
T PF08064_consen 94 LDQIFAILLPLWD 106 (107)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999986
|
; GO: 0004674 protein serine/threonine kinase activity |
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=92.44 E-value=11 Score=43.29 Aligned_cols=196 Identities=13% Similarity=0.110 Sum_probs=108.2
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHH
Q 000194 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1880)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1880)
...++++++....+++|..-...+. ...+.+++.|....+..+.+.+..+..++.++...++..+ |.+++.+......
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r 86 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILR 86 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhh
Confidence 4556677777777777742111111 2234567777777777777778889999999999998654 8888876654433
Q ss_pred HhcC----CCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchh
Q 000194 649 LEQS----SADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMR 724 (1880)
Q Consensus 649 l~~~----~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~ 724 (1880)
...+ +...+.....+..+..+++..|+ +-..++..+...+++. .++.+...++.++..+.+..--++.
T Consensus 87 ~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~----~~~~~~alale~l~~Lc~~~vvd~~ 158 (234)
T PF12530_consen 87 IPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQS----CDEVAQALALEALAPLCEAEVVDFY 158 (234)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHHHhhccHH
Confidence 2221 01112222234466777777766 5566677777777321 2555666667777777644333444
Q ss_pred hhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHh
Q 000194 725 QYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKML 782 (1880)
Q Consensus 725 ~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L 782 (1880)
+....+.+.+ +.+.|-.-+++|..++...+.--.....|+.+-..++..+
T Consensus 159 s~w~vl~~~l--------~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~l 208 (234)
T PF12530_consen 159 SAWKVLQKKL--------SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLL 208 (234)
T ss_pred HHHHHHHHhc--------CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHH
Confidence 4333333333 2234544555555554443322112234455544444444
|
|
| >PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) | Back alignment and domain information |
|---|
Probab=92.20 E-value=33 Score=41.36 Aligned_cols=169 Identities=12% Similarity=0.144 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHHhhcCc---cchhchHHHHHHHHHHhcCCchhHHHHHH-HHHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 000194 169 RRFAAVLILKEMAENAST---VFNVHVAEFVDAIWVALRDPTLAVRERAV-EALRACLRVIEKRETRWRVQWYYRMFEAT 244 (1880)
Q Consensus 169 ~R~aA~~~l~~la~~~p~---~l~~~l~~i~~~i~~~l~D~~~~VR~aA~-~al~~~~~~i~~r~~~~~~~~~~~~l~~~ 244 (1880)
.|..-+.++.....++++ .....++.+++.++.--++..|..|+.-. ..+..+..-+.+.-....+..+..+++.+
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 345556666666666663 33457777888877777777788887643 33333444444333345667778888888
Q ss_pred HhhccCCC--ChhHHHHHHHHHHHHHHcchhhh----HHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChh----
Q 000194 245 QDGLGRNA--PVHSIHGSLLAVGELLRNTGEFM----MSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRD---- 314 (1880)
Q Consensus 245 ~~~l~~~~--~~~~~~~al~~l~~ll~~~~~~~----~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~---- 314 (1880)
..-+.++. -++.|.+-...++.+.+.+.+.+ .+.+..+++.++-..+|.++.|....+.++..+......
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~ 202 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPE 202 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHH
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 77665432 25888888889999988665433 247788899999999999999999999888887754333
Q ss_pred ---hHHHHHHHHHHHHHHHhhcCCCC
Q 000194 315 ---RFVTNYLKICMNHILTVLRIPAE 337 (1880)
Q Consensus 315 ---~f~~~yl~~~~~~Ll~~L~~~~~ 337 (1880)
.|.+.|+-.++..++.++.+...
T Consensus 203 ~~~~F~~~y~~~il~~if~vltD~~H 228 (319)
T PF08767_consen 203 FANQFYQQYYLDILQDIFSVLTDSDH 228 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 56667777788888888765543
|
CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.19 E-value=2.4 Score=50.18 Aligned_cols=174 Identities=17% Similarity=0.248 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHhCCCCC-ChHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCC
Q 000194 1245 SQKHLVQSLEMAFSSPNI-PPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDAN 1323 (1880)
Q Consensus 1245 ~~~~l~~~l~~~l~~~~~-p~~i~q~ll~l~efm~~~~~~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~ 1323 (1880)
.++..+..++..+..+.. ..++++.+. +.+-...|.|..||.+++.. .
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~--------------------A~i~~~~~~~~~AL~~l~~~-----------~ 129 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLA--------------------ATILFHEGDYEEALKLLHKG-----------G 129 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHH--------------------HHHHCCCCHHHHHHCCCTTT-----------T
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHH--------------------HHHHHHcCCHHHHHHHHHcc-----------C
Confidence 455667777777766533 233333222 23334567777888877543 1
Q ss_pred cHHHHHHHHHHHhhcCChHHHhHHHHHHhch----hhhhhcHHHH-HHhc--CHHHHHHHHHHHHhccCCCchhHHhHhh
Q 000194 1324 PVAVVEALIHINNQLHQHEAAVGILTYAQKE----LDVQLKESWY-EKLQ--RWDDALKAYTNKASQASNPHIVLEATLG 1396 (1880)
Q Consensus 1324 ~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~----~~~~~~~~~~-e~lg--~W~~Al~~y~~~~~~~~~~~~~~~~~~g 1396 (1880)
..+++-..+.||-.+|++|.|...++..++. .-.++.+.|. -..| ..++|.-.|++..+..+.. +....|
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t---~~~lng 206 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST---PKLLNG 206 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S---HHHHHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC---HHHHHH
Confidence 3467777899999999999999999876532 2244555563 2233 5889999999865432221 455689
Q ss_pred HhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCCh-hhHHHHHhhcC
Q 000194 1397 RMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEW-DQMAEYVSRLD 1454 (1880)
Q Consensus 1397 ~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~W-d~~~~~~~~~~ 1454 (1880)
+..|...+|+|++-....++.... ++.....++- .+-++..+|+. +..++|++.+.
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~-~~~~~d~LaN-liv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEK-DPNDPDTLAN-LIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHH-HHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh-ccCCHHHHHH-HHHHHHHhCCChhHHHHHHHHHH
Confidence 999999999998877776654332 2222233333 35578899999 66888888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=92.16 E-value=37 Score=41.95 Aligned_cols=256 Identities=11% Similarity=0.150 Sum_probs=135.8
Q ss_pred HHHHHHHHHHhhccc-----C-CChHHHHHHHHHHHHHhhh---CCCCchhHHHHHHHHHHhhhcCCCcc-hhHHHHHHH
Q 000194 107 KVSKFSNYMRTVFEV-----K-RDREILVLASKVLGHLARA---GGAMTADEVEFQVKMALDWLRGDRVE-YRRFAAVLI 176 (1880)
Q Consensus 107 ~~~~~~~~L~~~l~~-----~-~d~~v~~~aa~~l~~L~~~---~g~~~~~~v~~~~~~~~~~l~~~~~~-~~R~aA~~~ 176 (1880)
++..+..++++=+.. + .|.++...|-+++|.+..+ ......++..+.+..+++-+...... ..-..++.+
T Consensus 36 k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ 115 (372)
T PF12231_consen 36 KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWC 115 (372)
T ss_pred HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344555555443322 1 2678999999999998765 25577888888999999988644332 222333333
Q ss_pred HHHHHhh-cCccchhchHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCC
Q 000194 177 LKEMAEN-ASTVFNVHVAEFVDAIWVALRDP--TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAP 253 (1880)
Q Consensus 177 l~~la~~-~p~~l~~~l~~i~~~i~~~l~D~--~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~ 253 (1880)
|+. ++ .|..+.......+-.++..+.++ ...|-..+..+++.++....+.-......|++.+++.+++..+
T Consensus 116 ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k---- 189 (372)
T PF12231_consen 116 LSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAK---- 189 (372)
T ss_pred HHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----
Confidence 322 23 34466666666555555666653 3334333344444443322211112344699988888876332
Q ss_pred hhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhc
Q 000194 254 VHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLR 333 (1880)
Q Consensus 254 ~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~ 333 (1880)
+.+..|+.++..+....+ ++..+-+.+...+..-- .+..|+ +.+...|...+.
T Consensus 190 -~ir~~a~~l~~~~~~~l~--------------------~~~~~s~~~~~~~~~~~--~~~~~~----~~~~~~L~~mi~ 242 (372)
T PF12231_consen 190 -DIRTKAISLLLEAKKCLG--------------------PNKELSKSVLEDLQRSL--ENGKLI----QLYCERLKEMIK 242 (372)
T ss_pred -HHHHHHHHHHHHHHHHhC--------------------hhHHHHHHHHHHhcccc--ccccHH----HHHHHHHHHHHh
Confidence 344444433332222111 12222222222222111 111233 333444444444
Q ss_pred CCCCcchHHHHHHHHHhhchhh-h--hhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCC
Q 000194 334 IPAERDSGFIALGEMAGALDGE-L--FHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGP 395 (1880)
Q Consensus 334 ~~~~r~~a~~alg~la~~v~~~-~--~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~ 395 (1880)
..++-..|.+.=+.+...+|.. + -+|++..+.....++...++..+..|+.||..+..+..+
T Consensus 243 ~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~ 307 (372)
T PF12231_consen 243 SKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNP 307 (372)
T ss_pred CcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3222233444434444444432 2 378899999999999776655667899999999887665
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.95 E-value=4.2 Score=45.43 Aligned_cols=187 Identities=21% Similarity=0.188 Sum_probs=107.2
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcc----------cccHHHH
Q 000194 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPA----------YVLPALR 639 (1880)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~----------~v~p~l~ 639 (1880)
..+.+|.||..+-++|+. .++ ++.++.+-...+|+..+||++..-.+.++--.... .+-|.-+
T Consensus 78 desq~pmvRhEAaealga--~~~-----~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p 150 (289)
T KOG0567|consen 78 DESQEPMVRHEAAEALGA--IGD-----PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP 150 (289)
T ss_pred ccccchHHHHHHHHHHHh--hcc-----hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCc
Confidence 356789999999999862 222 46677777777899999998766666665332210 0111100
Q ss_pred ---HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHH
Q 000194 640 ---RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLA 716 (1880)
Q Consensus 640 ---~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La 716 (1880)
..+.++=..+.+.....-.|..|.-.|-++ + -+.-+..+...+.++ +.-++..+..++|.|-
T Consensus 151 ~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----g------~EeaI~al~~~l~~~-----SalfrhEvAfVfGQl~ 215 (289)
T KOG0567|consen 151 ANLSSVHELRAELLDETKPLFERYRAMFYLRNI----G------TEEAINALIDGLADD-----SALFRHEVAFVFGQLQ 215 (289)
T ss_pred cccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----C------cHHHHHHHHHhcccc-----hHHHHHHHHHHHhhcc
Confidence 001111111111101111222222211111 0 123344555555543 5556677777887764
Q ss_pred HhcCCchhhhHHhHHHHHHHHHhcC-CchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHH
Q 000194 717 RVGGFGMRQYISELMPLIVEALLDG-AAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVL 795 (1880)
Q Consensus 717 ~~~g~~~~~~~~~l~p~l~~~l~d~-~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l 795 (1880)
. +..+|.+.+.|.|. ....+|..|+.+||.++. ++.++.|-..++++ .+-||..+.
T Consensus 216 s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~------------e~~~~vL~e~~~D~-~~vv~esc~ 272 (289)
T KOG0567|consen 216 S----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD------------EDCVEVLKEYLGDE-ERVVRESCE 272 (289)
T ss_pred c----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC------------HHHHHHHHHHcCCc-HHHHHHHHH
Confidence 3 35678888888763 456899999999998752 46788888888655 678888776
Q ss_pred HHHHHH
Q 000194 796 KVLGIM 801 (1880)
Q Consensus 796 ~~lg~l 801 (1880)
-++..+
T Consensus 273 valdm~ 278 (289)
T KOG0567|consen 273 VALDML 278 (289)
T ss_pred HHHHHH
Confidence 666554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.76 Score=54.63 Aligned_cols=254 Identities=19% Similarity=0.222 Sum_probs=69.1
Q ss_pred HHHHHHhhcCChHHHhHHHH-HHhchhhh------hhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHH
Q 000194 1330 ALIHINNQLHQHEAAVGILT-YAQKELDV------QLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLA 1402 (1880)
Q Consensus 1330 ~L~~iy~~L~~~D~~~Gi~~-~~~~~~~~------~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~ 1402 (1880)
.+..++-+.|+++.+..+++ ......+. ......++.+|++++|..+|++.+...+.. ......++.. .
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~---~~~~~~l~~l-~ 88 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKAN---PQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccc-c
Confidence 45777778888888887774 22221011 112234688999999999999887533221 1223334444 5
Q ss_pred HhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHH
Q 000194 1403 ALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRA 1482 (1880)
Q Consensus 1403 ~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a 1482 (1880)
..++.+.-...+...|.... + .......+..+.+.|+|+.....+........ ...+..||..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~-~--~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~~~~ 151 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDG-D--PRYLLSALQLYYRLGDYDEAEELLEKLEELPA--------------APDSARFWLA 151 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T-----------------T-HHHHHH
T ss_pred cccccccccccccccccccc-c--cchhhHHHHHHHHHhHHHHHHHHHHHHHhccC--------------CCCCHHHHHH
Confidence 67777777777666554321 1 22233456778899999999988876432110 0122334433
Q ss_pred --HHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHH-H
Q 000194 1483 --VLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAV-R 1559 (1880)
Q Consensus 1483 --~~~i~~~~~~esy~ray~~l~~lq~L~ELeE~i~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~-R 1559 (1880)
......|+. ..| +.-++.+++. .|+. ..-. ..-.|. + .-..+.+.-..++.. .
T Consensus 152 ~a~~~~~~G~~----~~A---------~~~~~~al~~--~P~~----~~~~--~~l~~~--l-i~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 152 LAEIYEQLGDP----DKA---------LRDYRKALEL--DPDD----PDAR--NALAWL--L-IDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHHHHHHCCHH----HHH---------HHHHHHHHHH---TT-----HHHH--HHHHHH--H-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCH----HHH---------HHHHHHHHHc--CCCC----HHHH--HHHHHH--H-HHCCChHHHHHHHHHHH
Confidence 333333431 111 1222233221 1211 1111 112232 1 111122221122211 1
Q ss_pred HhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHH
Q 000194 1560 ALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARL 1639 (1880)
Q Consensus 1560 ~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L 1639 (1880)
... ..+...|..++.....-|+.+.|...+.++...+| .+|.+...++..++..|. ..+|....
T Consensus 208 ~~~---~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p----------~d~~~~~~~a~~l~~~g~---~~~A~~~~ 271 (280)
T PF13429_consen 208 KAA---PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP----------DDPLWLLAYADALEQAGR---KDEALRLR 271 (280)
T ss_dssp HH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST----------T-HHHHHHHHHHHT---------------
T ss_pred HHC---cCHHHHHHHHHHHhccccccccccccccccccccc----------cccccccccccccccccc---cccccccc
Confidence 111 23456788899999999999999999999887655 358999999999999995 57888877
Q ss_pred HHHHH
Q 000194 1640 QTLAM 1644 (1880)
Q Consensus 1640 ~~~~~ 1644 (1880)
+....
T Consensus 272 ~~~~~ 276 (280)
T PF13429_consen 272 RQALR 276 (280)
T ss_dssp -----
T ss_pred ccccc
Confidence 76543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=91.75 E-value=56 Score=43.18 Aligned_cols=103 Identities=17% Similarity=0.105 Sum_probs=68.7
Q ss_pred ccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHH------HHHhcCHH
Q 000194 1298 CRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESW------YEKLQRWD 1371 (1880)
Q Consensus 1298 c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~------~e~lg~W~ 1371 (1880)
.|.+..|...++.-+.+ ++.....+..|..||.+.|+..-+.--+..+. ++..+-.+.| .+++|+|+
T Consensus 152 rg~~eeA~~i~~EvIkq------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA-HL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQ------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA-HLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred hCCHHHHHHHHHHHHHh------CccchhhHHHHHHHHHHcccHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHhcccHH
Confidence 36777788777555543 34446678999999999998776553333222 2222233455 69999999
Q ss_pred HHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHH
Q 000194 1372 DALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEEL 1410 (1880)
Q Consensus 1372 ~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l 1410 (1880)
+|--||.+.++..+.. ++....++.=+.++|+...-
T Consensus 225 qA~~cy~rAI~~~p~n---~~~~~ers~L~~~~G~~~~A 260 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSN---WELIYERSSLYQKTGDLKRA 260 (895)
T ss_pred HHHHHHHHHHhcCCcc---hHHHHHHHHHHHHhChHHHH
Confidence 9999999999754332 55566666667777776443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=91.56 E-value=18 Score=40.76 Aligned_cols=166 Identities=15% Similarity=0.158 Sum_probs=106.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....+...+....+.|+++.|...+.++...+|. .+......+.+.+.+|+ ..+|+..+++.+....
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~ 96 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD----------DYLAYLALALYYQQLGE---LEKAEDSFRRALTLNP 96 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC
Confidence 3678899999999999999999999888765442 35666778888888885 5789988887664311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhc--ccchHHHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCA--TKWGKAWHSWALFNTAV 1725 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~--~~~~k~w~~wA~~n~~~ 1725 (1880)
. . ...+..+|...... ...++..+.|..+.+.. +.....|..+|......
T Consensus 97 ~------------------~----~~~~~~~~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 97 N------------------N----GDVLNNYGTFLCQQ------GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA 148 (234)
T ss_pred C------------------C----HHHHHHHHHHHHHc------ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc
Confidence 0 0 11233333333222 24577888888887643 34456666666554321
Q ss_pred HHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000194 1726 MSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1880)
Q Consensus 1726 ~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1880)
.-...|+..|-+++...+ ........+-.+++..|+.++....+++.+.
T Consensus 149 --------------g~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 149 --------------GDFDKAEKYLTRALQIDP------QRPESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred --------------CCHHHHHHHHHHHHHhCc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 123467888888877642 2233455666777777877766666665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) | Back alignment and domain information |
|---|
Probab=91.41 E-value=39 Score=40.69 Aligned_cols=131 Identities=15% Similarity=0.214 Sum_probs=96.3
Q ss_pred cCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCC--cchhHHHHHHHHHHHHhhcCccch----hchHH
Q 000194 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDR--VEYRRFAAVLILKEMAENASTVFN----VHVAE 194 (1880)
Q Consensus 121 ~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~--~~~~R~aA~~~l~~la~~~p~~l~----~~l~~ 194 (1880)
...|++|....+..+.++-..-....+..++..+...++-+.++- -+..|.+=..+++.+.++|+..+. ..+..
T Consensus 86 ~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~ 165 (319)
T PF08767_consen 86 DAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKL 165 (319)
T ss_dssp GGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHH
T ss_pred cccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH
Confidence 356899999999888887765445667777777777777776433 347888889999999999988654 46788
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH----HHHHHHHHHhhccCC
Q 000194 195 FVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW----YYRMFEATQDGLGRN 251 (1880)
Q Consensus 195 i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~----~~~~l~~~~~~l~~~ 251 (1880)
+++.+.-|+++++..|.+.+.+++..+++.+...+......+ |..++..+..-+.++
T Consensus 166 ~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~ 226 (319)
T PF08767_consen 166 VIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDS 226 (319)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 899999999999999999999999998887775233333333 444555555555544
|
CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=91.36 E-value=81 Score=44.23 Aligned_cols=127 Identities=12% Similarity=0.105 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhhcCChHHHhHHHHHHhch--hhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHH
Q 000194 1326 AVVEALIHINNQLHQHEAAVGILTYAQKE--LDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAA 1403 (1880)
Q Consensus 1326 ~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~--~~~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~ 1403 (1880)
.+...|+..|.+.|+.|.+..++...... ...+.....|-+.|++++|++.|++.....-.|+. ......+..+..
T Consensus 223 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~--~ty~~ll~a~~~ 300 (857)
T PLN03077 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL--MTITSVISACEL 300 (857)
T ss_pred chHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHh
Confidence 45678999999999999999988753321 01111222488999999999999886654444542 345677888888
Q ss_pred hhCHHHHHHHHhhhcCC-CChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCCC
Q 000194 1404 LARWEELNNLCKEYWTP-AEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDG 1456 (1880)
Q Consensus 1404 Lg~w~~l~~~~~~~~~~-~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~ 1456 (1880)
+|+++.-.+........ ..++ ..+......+..+.|+|+...+..+.++..
T Consensus 301 ~g~~~~a~~l~~~~~~~g~~~d--~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 352 (857)
T PLN03077 301 LGDERLGREMHGYVVKTGFAVD--VSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352 (857)
T ss_pred cCChHHHHHHHHHHHHhCCccc--hHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Confidence 88886554443321111 1111 122234456777889999999888887653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=91.31 E-value=8.7 Score=50.19 Aligned_cols=183 Identities=13% Similarity=0.060 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCH
Q 000194 1615 VMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESI 1694 (1880)
Q Consensus 1615 v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~ 1694 (1880)
-.+..|..+.++|+ .++|..++.+++..-. .....|..+|.-..+. ...
T Consensus 141 ~ll~eAN~lfarg~---~eeA~~i~~EvIkqdp----------------------~~~~ay~tL~~IyEqr------Gd~ 189 (895)
T KOG2076|consen 141 QLLGEANNLFARGD---LEEAEEILMEVIKQDP----------------------RNPIAYYTLGEIYEQR------GDI 189 (895)
T ss_pred HHHHHHHHHHHhCC---HHHHHHHHHHHHHhCc----------------------cchhhHHHHHHHHHHc------ccH
Confidence 35678889999995 6899999999886321 1122344444443332 135
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHH
Q 000194 1695 PEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLT 1774 (1880)
Q Consensus 1695 ~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLt 1774 (1880)
+..+.....|..++|+.+.-|..||...-+ ..++..|.-||-|+|++. ....+.+.+=-+
T Consensus 190 eK~l~~~llAAHL~p~d~e~W~~ladls~~--------------~~~i~qA~~cy~rAI~~~------p~n~~~~~ers~ 249 (895)
T KOG2076|consen 190 EKALNFWLLAAHLNPKDYELWKRLADLSEQ--------------LGNINQARYCYSRAIQAN------PSNWELIYERSS 249 (895)
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHh--------------cccHHHHHHHHHHHHhcC------CcchHHHHHHHH
Confidence 667788888999999999999999976332 247789999999999985 345888999999
Q ss_pred HHHhcCCcHHHHHHHHhcccCCChhhHHHHHHHHHHhccC-C--ChhHHHHHHHHHHHHH-----hhCchhhHHHHHHHh
Q 000194 1775 LWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHS-N--NRAVRELIQSLLVRIG-----QSHPQALMYPLLVAC 1846 (1880)
Q Consensus 1775 Lwf~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQLiaRi~~-~--~~~v~~~l~~lL~~i~-----~~hPqa~ly~L~~~~ 1846 (1880)
|.-++|....--+.+.+-+...|+.-| .++-++|=+.-| + .......+..|--.+. ..+|++=+|..+.+.
T Consensus 250 L~~~~G~~~~Am~~f~~l~~~~p~~d~-er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 250 LYQKTGDLKRAMETFLQLLQLDPPVDI-ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HHHHhChHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 999999988777788888888884333 445555555322 1 1122334444433333 356777777777666
Q ss_pred cCC
Q 000194 1847 KSI 1849 (1880)
Q Consensus 1847 kS~ 1849 (1880)
++.
T Consensus 329 ~~q 331 (895)
T KOG2076|consen 329 NKQ 331 (895)
T ss_pred hHH
Confidence 543
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.22 E-value=2.8 Score=51.04 Aligned_cols=167 Identities=18% Similarity=0.254 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhh--ccHhhHHHHH-HHhCCCCHhHHHHHHHHHHhhhcCCcc
Q 000194 556 RLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFL--AQADCLSAIF-AALNDEDFDVREYAISVAGRLSEKNPA 632 (1880)
Q Consensus 556 ~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L--~~~~~l~~L~-~~l~D~~~~VR~~a~~~l~~l~~~~p~ 632 (1880)
++.++++.+| ..|.|+-.|..-+-++.. .|. ....+++.++ .+.+|.+.+||++|+-.||-++-..|.
T Consensus 515 e~add~I~el----l~d~ds~lRy~G~fs~al-----Ay~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~ 585 (926)
T COG5116 515 EMADDYINEL----LYDKDSILRYNGVFSLAL-----AYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD 585 (926)
T ss_pred HHHHHHHHHH----hcCchHHhhhccHHHHHH-----HHhcCCcchhHhhhheeecccCchHHHHHHHHheeeeEecCcc
Confidence 4556666555 478888888765554431 111 0123455554 458899999999999999988777654
Q ss_pred cccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHH
Q 000194 633 YVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTV 712 (1880)
Q Consensus 633 ~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l 712 (1880)
.+ ...+.-|..+ ..+.+|.-.+-+||-.+...+. ...+++|-+.+.|. ..-|++.++.++
T Consensus 586 ~l--------v~tvelLs~s-hN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~-----~dfVRQ~AmIa~ 645 (926)
T COG5116 586 LL--------VGTVELLSES-HNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDT-----NDFVRQSAMIAV 645 (926)
T ss_pred hh--------hHHHHHhhhc-cchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCc-----HHHHHHHHHHHH
Confidence 32 2222333344 5677887777788877766552 22333444444443 677899999999
Q ss_pred HHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 000194 713 GDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQ 756 (1880)
Q Consensus 713 ~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~ 756 (1880)
+.+.....+++.|.+..+...+.+.+.| +++.++.-||.
T Consensus 646 ~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~-----Khe~glaklGA 684 (926)
T COG5116 646 GMILMQCNPELNPNVKRIIKKFNRVIVD-----KHESGLAKLGA 684 (926)
T ss_pred HHHHhhcCcccChhHHHHHHHHHHHHhh-----hhHhHHHHHHH
Confidence 9988888899999999999999998875 34455555553
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=91.14 E-value=4.5 Score=48.49 Aligned_cols=197 Identities=17% Similarity=0.198 Sum_probs=116.1
Q ss_pred HhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccccc-H---HHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhC
Q 000194 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVL-P---ALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNC 673 (1880)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~-p---~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~ 673 (1880)
.+.+..|...+..-+++.|..+..+++.+....+..=. | ++.....+++..+-...+.++.--.+..+|-+.++.-
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e 154 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHE 154 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSH
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhH
Confidence 46788888888888899999999999999887765422 2 2222112222222211122332223333333333210
Q ss_pred --cccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhc----CCchhhhHHhHHHHHHHHHhcCCchhhH
Q 000194 674 --ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG----GFGMRQYISELMPLIVEALLDGAAVTKR 747 (1880)
Q Consensus 674 --~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~----g~~~~~~~~~l~p~l~~~l~d~~~~~~r 747 (1880)
...+.. .+.+..+...+.. .+-++...++.++.++-..- .+.+..+++.++..+...+... +.-.|
T Consensus 155 ~l~~~iL~--~~~f~~ff~~~~~-----~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtk 226 (335)
T PF08569_consen 155 SLAKIILY--SECFWKFFKYVQL-----PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTK 226 (335)
T ss_dssp HHHHHHHT--SGGGGGHHHHTTS-----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHH
T ss_pred HHHHHHhC--cHHHHHHHHHhcC-----CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEee
Confidence 000000 1112223333333 37888899999998866432 3456667778888666666544 56678
Q ss_pred HHHHHHHHHHHhhcCc--ccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcc
Q 000194 748 EVAVSTLGQVVQSTGY--VITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA 803 (1880)
Q Consensus 748 ~~Al~~Lg~l~~~~~~--~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lga 803 (1880)
..+++-||.+...-.. ++.-|..-|+-|..++.+|++ .+..++.+|++++-...|
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d-~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRD-KSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcC-cchhhhHHHHHHHHHHHh
Confidence 8999999998854433 245667779999999999985 489999999999877654
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.11 E-value=33 Score=39.34 Aligned_cols=281 Identities=14% Similarity=0.090 Sum_probs=137.1
Q ss_pred CCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHH-HHHHHHHHHHHhcCC
Q 000194 495 KGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI-EELVEKLLIAAVADA 573 (1880)
Q Consensus 495 ~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~~Ll~~~~~d~ 573 (1880)
+|.++.|-++..+...+-+++..|..-|...++.++.. ++. +..+. ...++ .++++.++ -.+...
T Consensus 75 egahlapnlmpdLQrGLiaddasVKiLackqigcilEd----cDt--------naVse-illvvNaeilklil-dcIgge 140 (524)
T KOG4413|consen 75 EGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILED----CDT--------NAVSE-ILLVVNAEILKLIL-DCIGGE 140 (524)
T ss_pred cchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhc----Cch--------hhHHH-HHHHhhhhHHHHHH-HHHcCC
Confidence 35556565555555667777777876666665555532 110 00001 11222 34444333 356777
Q ss_pred ChhHHHHHHHhccCCCCcchhhccHhhHHHHHHH-hCCC----------CHhHHHHHHHHHHhhhcCCcccccHHHH-HH
Q 000194 574 DVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAA-LNDE----------DFDVREYAISVAGRLSEKNPAYVLPALR-RH 641 (1880)
Q Consensus 574 ~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~-l~D~----------~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~ 641 (1880)
|.+|-.++.++++.-..| |.-+..+|.. ++|+ +.-+|-.++.++-.+....|......-. ..
T Consensus 141 ddeVAkAAiesikrialf------paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGL 214 (524)
T KOG4413|consen 141 DDEVAKAAIESIKRIALF------PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGL 214 (524)
T ss_pred cHHHHHHHHHHHHHHHhc------HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhH
Confidence 888888888887521222 2234444421 1221 2245667777777777766643221111 23
Q ss_pred HHHHHHHHhcCCCChHhHHHHHHHHHHHHHh-CcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHH---
Q 000194 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRN-CERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLAR--- 717 (1880)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~-~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~--- 717 (1880)
+.++..+++.. +|.-++...+++...+++. .+..+.|. ..+++.+...+...+ .+|--.-.++...|.+-.
T Consensus 215 ldlLeaElkGt-eDtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsGad---sdPfekfralmgfgkffgkea 289 (524)
T KOG4413|consen 215 LDLLEAELKGT-EDTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISGAD---SDPFEKFRALMGFGKFFGKEA 289 (524)
T ss_pred HHHHHHHhcCC-cceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhCCC---CCcHHHHHHHHHHHHHhcchH
Confidence 34455667665 6677788888888888864 23222221 345555555544321 122222222333333211
Q ss_pred ---hcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHH-HHHHHhcCCCCHHHHHH
Q 000194 718 ---VGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLG-LLLKMLNGELVWSTRRE 793 (1880)
Q Consensus 718 ---~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~-~Ll~~L~~~~~~~vr~~ 793 (1880)
+..+.+..-+.-.+.-.+.++. .++++.-++|+.++|.+-+++...--....-|+-.+ .+.++.....+ .-..+
T Consensus 290 imdvseeaicealiiaidgsfEmiE-mnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnah-akqea 367 (524)
T KOG4413|consen 290 IMDVSEEAICEALIIAIDGSFEMIE-MNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAH-AKQEA 367 (524)
T ss_pred HhhcCHHHHHHHHHHHHHhhHHhhh-cCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhccccc-chHHH
Confidence 1122222222222222233333 235667789999999987776543101111232333 33344432222 23456
Q ss_pred HHHHHHHHc
Q 000194 794 VLKVLGIMG 802 (1880)
Q Consensus 794 ~l~~lg~lg 802 (1880)
+++++..+.
T Consensus 368 aihaLaaIa 376 (524)
T KOG4413|consen 368 AIHALAAIA 376 (524)
T ss_pred HHHHHHHhh
Confidence 778877664
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.05 E-value=3.2 Score=51.30 Aligned_cols=181 Identities=18% Similarity=0.150 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHHHHHhhccCCHHHHHHHHHH-HHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCccc
Q 000194 1528 EGRRAIIRNMWTERIQGTKRNVEVWQALLAV-RALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHEN 1606 (1880)
Q Consensus 1528 ~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~-R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~ 1606 (1880)
.+...++-+.|++|=+ .++-|.. |..+--..+..+.|+..+...-..|+...|..+...+++++|..-.
T Consensus 116 ae~ysn~aN~~kerg~--------~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~c-- 185 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQ--------LQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYC-- 185 (966)
T ss_pred HHHHHHHHHHHHHhch--------HHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhh--
Confidence 3455667889988732 2222222 3333223356899999999999999999999999999988764210
Q ss_pred ccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcC
Q 000194 1607 VRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALP 1686 (1880)
Q Consensus 1607 ~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~ 1686 (1880)
+.---..++=++|. -.||-....+-+.. . .-.|-++.-+|--...
T Consensus 186 --------a~s~lgnLlka~Gr---l~ea~~cYlkAi~~---q-------------------p~fAiawsnLg~~f~~-- 230 (966)
T KOG4626|consen 186 --------ARSDLGNLLKAEGR---LEEAKACYLKAIET---Q-------------------PCFAIAWSNLGCVFNA-- 230 (966)
T ss_pred --------hhcchhHHHHhhcc---cchhHHHHHHHHhh---C-------------------CceeeeehhcchHHhh--
Confidence 00011123333442 23444333322211 0 0122222222322211
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh------hhc----cCCC----------CchhhHHHHHH
Q 000194 1687 PGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH------YTL----RGLP----------SVAPQFVVHAV 1746 (1880)
Q Consensus 1687 ~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~------~~~----~~~~----------~~~~~~~~~ai 1746 (1880)
...+...+++|++|++++|+...|+..++.+..+.... |.+ +.+. +..+-.+..||
T Consensus 231 ----~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI 306 (966)
T KOG4626|consen 231 ----QGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAI 306 (966)
T ss_pred ----cchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHH
Confidence 23567789999999999999999999998887664321 110 0000 01123567899
Q ss_pred HHHHHHHhhcc
Q 000194 1747 TGYFHSIACAA 1757 (1880)
Q Consensus 1747 ~~y~~si~~~~ 1757 (1880)
.+|-|+|.+++
T Consensus 307 ~~Ykral~~~P 317 (966)
T KOG4626|consen 307 DTYKRALELQP 317 (966)
T ss_pred HHHHHHHhcCC
Confidence 99999999864
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.02 E-value=28 Score=41.17 Aligned_cols=183 Identities=17% Similarity=0.178 Sum_probs=106.5
Q ss_pred cCCChhhhhhHHHHHhHhhccccCcchhHHHHH--HHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH-HHH
Q 000194 79 ESNDAAENLGALRAIDELIDVALGENASKVSKF--SNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF-QVK 155 (1880)
Q Consensus 79 ~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~--~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~-~~~ 155 (1880)
.+.+..+|.+++--+.-++.-. ++++.+..+ ..-|...+. ..|.+++..|++++|..+......+..+++. -+.
T Consensus 93 ~s~~le~ke~ald~Le~lve~i--DnAndl~~~ggl~~ll~~l~-~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDI--DNANDLISLGGLVPLLGYLE-NSDAELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhh--hhHHhHhhccCHHHHHHHhc-CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 3578899999998888886532 233333322 223333554 5689999999999999988632222223322 234
Q ss_pred HHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchh--chHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHhhhchh
Q 000194 156 MALDWLRGDRVEYRRFAAVLILKEMAENASTVFNV--HVAEFVDAIWVALRDP--TLAVRERAVEALRACLRVIEKRETR 231 (1880)
Q Consensus 156 ~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~--~l~~i~~~i~~~l~D~--~~~VR~aA~~al~~~~~~i~~r~~~ 231 (1880)
.++..+..+.+...|..|+.+++.+..+-+..... -++. ...+..+|.++ +...+.-|..-+..++.--. .
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~--s-- 244 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK--S-- 244 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh--h--
Confidence 44455556777788999999999999986643221 2222 45667788774 45555666665665543211 1
Q ss_pred hHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 000194 232 WRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLR 269 (1880)
Q Consensus 232 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~ 269 (1880)
.....-...++.....+..+.++++...++.++-.++.
T Consensus 245 ~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 245 DEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 11111122333333334444446667777666655544
|
|
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=90.98 E-value=4.8 Score=47.51 Aligned_cols=119 Identities=18% Similarity=0.133 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCC-CCCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhH
Q 000194 856 TVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG-CVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHI 934 (1880)
Q Consensus 856 ~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~-~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i 934 (1880)
..+-..|-+.|...=.+.+|..+.+....||+.+|.. +...++-..|+++-.+..+.-++|..++..+...+-.+++.+
T Consensus 53 ~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L 132 (307)
T PF04118_consen 53 LQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPAL 132 (307)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHH
Confidence 4566778888855545678999999999999999886 456777888888888877766677666665555544555566
Q ss_pred HHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhh
Q 000194 935 RKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDE 980 (1880)
Q Consensus 935 ~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~ 980 (1880)
+|.++.++..+.-.+.... ......++.+++.+..+++..
T Consensus 133 ~p~l~~li~slLpGLede~------sE~~~~~~~ll~~l~~~v~~~ 172 (307)
T PF04118_consen 133 RPCLKGLILSLLPGLEDEG------SEFFDRTLKLLDKLKEAVGDK 172 (307)
T ss_pred HHHHHHHHHHhccccccCC------chHHHHHHHHHHHHHHhcChh
Confidence 6666666555554444221 011224666666666666655
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=90.89 E-value=76 Score=46.79 Aligned_cols=167 Identities=14% Similarity=0.115 Sum_probs=99.5
Q ss_pred HHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHH----H----HHHHHHhhccc
Q 000194 50 HIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVS----K----FSNYMRTVFEV 121 (1880)
Q Consensus 50 ~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~----~----~~~~L~~~l~~ 121 (1880)
-|.+....++.+.+..|+..|...-.+=++++. ...+.++..|+++..- +..+++ + +.+|+..+- +
T Consensus 1074 kIF~~S~~L~~eai~~fv~AL~~vS~eEl~~~~----~pr~FsLqKLveIa~~-Nm~Rirl~W~~iW~~l~~hf~~vg-~ 1147 (1780)
T PLN03076 1074 RIFTRSQKLNSEAIIDFVKALCKVSMEELRSPS----DPRVFSLTKIVEIAHY-NMNRIRLVWSSIWHVLSDFFVTIG-C 1147 (1780)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhHHHHccCC----CCchhHHHHHHHHHHh-cccchheehHhHHHHHHHHHHHhc-C
Confidence 344556788888888877777664333333322 2367778888777422 222322 1 223333321 2
Q ss_pred CCChHHHHHHHHHHHHHhhhCCC--Cchh-HHHHHHHHHHhh-hcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHH
Q 000194 122 KRDREILVLASKVLGHLARAGGA--MTAD-EVEFQVKMALDW-LRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVD 197 (1880)
Q Consensus 122 ~~d~~v~~~aa~~l~~L~~~~g~--~~~~-~v~~~~~~~~~~-l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~ 197 (1880)
..+.+++-.|...|.+|+...-. ..+. -++..+=+-++. +........|.-.+..+.++.......+..==..|+.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 33567778888888888774211 1111 122222233333 3444555788888899998888777767766677888
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHH
Q 000194 198 AIWVALRDPTLAVRERAVEALRACL 222 (1880)
Q Consensus 198 ~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1880)
.+-.+..|+++.+-+.|.+.+..++
T Consensus 1228 VLs~aa~d~~e~iV~lAFetl~~I~ 1252 (1780)
T PLN03076 1228 VFTTAAYDDHKNIVLLAFEIIEKII 1252 (1780)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHH
Confidence 8888888999888777777766543
|
|
| >COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=90.85 E-value=5 Score=45.03 Aligned_cols=165 Identities=17% Similarity=0.240 Sum_probs=97.8
Q ss_pred HHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCC------CHhHHHHHHHHHHhhhcCCcccccHHHH
Q 000194 566 LIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDE------DFDVREYAISVAGRLSEKNPAYVLPALR 639 (1880)
Q Consensus 566 l~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~------~~~VR~~a~~~l~~l~~~~p~~v~p~l~ 639 (1880)
+.....+.+...|.+++++|..+.- + ...++..+..++|. +.++-...+.....|....--.+-|++.
T Consensus 203 isal~dEs~~~~r~aAl~sLr~dsG----l--hQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~h 276 (450)
T COG5095 203 ISALLDESDEQTRDAALESLRNDSG----L--HQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLH 276 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcc----H--HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHH
Confidence 3333567789999999999964322 2 12345444444432 2333344444444555544445679999
Q ss_pred HHHHHHHHHHh-----cCCCC---hHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHH
Q 000194 640 RHLIQLLTYLE-----QSSAD---NKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVT 711 (1880)
Q Consensus 640 ~~l~~~l~~l~-----~~~~~---~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~ 711 (1880)
++|..+++.+- +++.+ ...|.-|+.+++-+.++.++..+..-+.+...+++.+-|.. ...+..-+++.+
T Consensus 277 qlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~---k~~sT~YGalkg 353 (450)
T COG5095 277 QLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDRE---KTESTQYGALKG 353 (450)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcc---cccchhhhhhhh
Confidence 98888777652 23122 23677899999999998887777767778888888877653 233344566677
Q ss_pred HHHHHHhc-CCchhhhHHhHHHHHHHHHh
Q 000194 712 VGDLARVG-GFGMRQYISELMPLIVEALL 739 (1880)
Q Consensus 712 l~~La~~~-g~~~~~~~~~l~p~l~~~l~ 739 (1880)
+..|.... ...+.|.++-....+.+.|.
T Consensus 354 ls~l~ke~ir~~i~pn~~~y~rlv~ktle 382 (450)
T COG5095 354 LSILSKEVIRTVIKPNADYYVRLVNKTLE 382 (450)
T ss_pred hhhhchhheeeeeccchHHHHHHHHHHHh
Confidence 76665321 22334444444444444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=90.70 E-value=2.6 Score=44.19 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCC
Q 000194 1613 PQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDE 1692 (1880)
Q Consensus 1613 ~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~ 1692 (1880)
|...+..+..++..|+ ..+|+..++..+.. . +. ...--..++.++..+|+|
T Consensus 24 p~~~~~~g~~~~~~g~---~~~A~~~~~~al~~-~--P~------------~~~a~~~lg~~~~~~g~~----------- 74 (144)
T PRK15359 24 PETVYASGYASWQEGD---YSRAVIDFSWLVMA-Q--PW------------SWRAHIALAGTWMMLKEY----------- 74 (144)
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHc-C--CC------------cHHHHHHHHHHHHHHhhH-----------
Confidence 4445667888888884 67899988876532 1 00 011123355556566555
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
++.+..|..|++++|++..+|+.+|....+. + -...|+..|-+++.+.
T Consensus 75 --~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~-------g-------~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 75 --TTAINFYGHALMLDASHPEPVYQTGVCLKMM-------G-------EPGLAREAFQTAIKMS 122 (144)
T ss_pred --HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc-------C-------CHHHHHHHHHHHHHhC
Confidence 6788999999999999999999999875542 1 2236899999999885
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.52 E-value=99 Score=43.76 Aligned_cols=99 Identities=18% Similarity=0.116 Sum_probs=60.1
Q ss_pred HhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000194 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY 586 (1880)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1880)
.+.-+.|-+++||.+++......+...+.. ..... .++.....|.|+++|......+.
T Consensus 305 fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~------------------~~~~~----~~~~l~~~~~D~~~rir~~v~i~ 362 (1266)
T KOG1525|consen 305 FLGRFNDISVEVRMECVESIKQCLLNNPSI------------------AKAST----ILLALRERDLDEDVRVRTQVVIV 362 (1266)
T ss_pred HHHHhccCChhhhhhHHHHhHHHHhcCchh------------------hhHHH----HHHHHHhhcCChhhhheeeEEEE
Confidence 344456778999999888777777654321 11111 11222335677777776555553
Q ss_pred CC--CCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhc
Q 000194 587 GN--RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSE 628 (1880)
Q Consensus 587 ~~--~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~ 628 (1880)
.+ ..|.-.+... .+..+-.-+.|....||..|+.-+..+-+
T Consensus 363 ~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 363 ACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred EeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 22 1222212222 66777778889999999999998877665
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.49 E-value=38 Score=38.93 Aligned_cols=200 Identities=12% Similarity=0.125 Sum_probs=107.2
Q ss_pred cchhHHH---HHHHHHHHHhh-cCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH----H
Q 000194 166 VEYRRFA---AVLILKEMAEN-ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW----Y 237 (1880)
Q Consensus 166 ~~~~R~a---A~~~l~~la~~-~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~----~ 237 (1880)
+++.|.. .+.+|.-+-.. -|..+. +++.|.+-.+|..++..|.--|+..++.+++ +-+.+..... -
T Consensus 53 NenhrekttlcVscLERLfkakegahla---pnlmpdLQrGLiaddasVKiLackqigcilE---dcDtnaVseillvvN 126 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGAHLA---PNLMPDLQRGLIADDASVKILACKQIGCILE---DCDTNAVSEILLVVN 126 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccchhhc---hhhhHHHHhcccCCcchhhhhhHhhhhHHHh---cCchhhHHHHHHHhh
Confidence 4556655 33344433332 222333 3455666689999999998878777766544 3333222222 3
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH-HHHH-HHHHh-hcchhHHHHHHHHHhHhHhhhChh
Q 000194 238 YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE-VAEI-VLRYL-EHRDRLVRLSITSLLPRIAHFLRD 314 (1880)
Q Consensus 238 ~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~-i~~~-ll~~~-~~~~~~Vr~~~~~~i~~la~~~~~ 314 (1880)
..+++.+...+...+ .++..+|+.-+..+..... .|..-|+. +.+. =++.+ -..+..+|-.+..+|-.+.+.++.
T Consensus 127 aeilklildcIgged-deVAkAAiesikrialfpa-aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 127 AEILKLILDCIGGED-DEVAKAAIESIKRIALFPA-ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPE 204 (524)
T ss_pred hhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhcHH-HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHH
Confidence 467888888887764 5788998888877765211 11111110 0000 00101 123566788888888888877775
Q ss_pred hHHHHHH--HHHHHHHHHhhcCCCC---cchHHHHHHHHHhhchhhhhhhhh--HHHHHHHHhhcCCCCC
Q 000194 315 RFVTNYL--KICMNHILTVLRIPAE---RDSGFIALGEMAGALDGELFHYLP--TITSHLREAIAPRRGK 377 (1880)
Q Consensus 315 ~f~~~yl--~~~~~~Ll~~L~~~~~---r~~a~~alg~la~~v~~~~~p~l~--~i~~~l~~~l~~~~~~ 377 (1880)
.. +|. ..++..|..-++-.++ +...++....++..-.+ ..|++ .+++.|...+.-.+.+
T Consensus 205 sa--neckkSGLldlLeaElkGteDtLVianciElvteLaeteHg--reflaQeglIdlicnIIsGadsd 270 (524)
T KOG4413|consen 205 SA--NECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHG--REFLAQEGLIDLICNIISGADSD 270 (524)
T ss_pred HH--hHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhh--hhhcchhhHHHHHHHHhhCCCCC
Confidence 43 233 3455555555654343 44455555555543322 34554 3566666666444333
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=90.17 E-value=42 Score=38.99 Aligned_cols=239 Identities=13% Similarity=0.119 Sum_probs=134.6
Q ss_pred HhhhcCCChhhhhhHHHHHhHhhccccCc--chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH
Q 000194 75 SGLLESNDAAENLGALRAIDELIDVALGE--NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF 152 (1880)
Q Consensus 75 ~~l~~s~~~~~r~~~i~ai~~Li~~~~~~--~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~ 152 (1880)
-+.+.+.|...|..|+..+...+.--..+ +.+.+.-+.+|...-+ .|...+..+.+++..|+.. .....+....
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl---~D~~~~~~~l~gl~~L~~~-~~~~~~~~~~ 80 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL---DDHACVQPALKGLLALVKM-KNFSPESAVK 80 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh---ccHhhHHHHHHHHHHHHhC-cCCChhhHHH
Confidence 34567788899999999999887653222 3445566666666555 3788888889999988854 2344445566
Q ss_pred HHHHHHhhhc-CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHhhhch
Q 000194 153 QVKMALDWLR-GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALR-DPTLAVRERAVEALRACLRVIEKRET 230 (1880)
Q Consensus 153 ~~~~~~~~l~-~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~-D~~~~VR~aA~~al~~~~~~i~~r~~ 230 (1880)
.++.+++... .......|.....++..+.++-...+...=+.++..++..+. +.+|+-=--+.+-+..++....
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~---- 156 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD---- 156 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc----
Confidence 6666665443 233446799999999999888655555444566666665552 3334322223333332222111
Q ss_pred hhHHHHHHHHHHHHHhhc----cCC-CCh--hHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHH
Q 000194 231 RWRVQWYYRMFEATQDGL----GRN-APV--HSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSIT 302 (1880)
Q Consensus 231 ~~~~~~~~~~l~~~~~~l----~~~-~~~--~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~ 302 (1880)
. .+....+++.+...+ ..+ ++. -.+..=-.+|...+.. .+.|. -.++.++..+++..+.++.-++
T Consensus 157 -~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s-----~~~fa~~~~p~LleKL~s~~~~~K~D~L 229 (262)
T PF14500_consen 157 -I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS-----TPLFAPFAFPLLLEKLDSTSPSVKLDSL 229 (262)
T ss_pred -c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC-----cHhhHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 2 344555666555432 111 111 0111111122222221 23343 3567788888888888888888
Q ss_pred HHhHhHhh-hChhhHHHHHHHHHHHHHH
Q 000194 303 SLLPRIAH-FLRDRFVTNYLKICMNHIL 329 (1880)
Q Consensus 303 ~~i~~la~-~~~~~f~~~yl~~~~~~Ll 329 (1880)
.++...+. |.+.... .|+..+-..|.
T Consensus 230 ~tL~~c~~~y~~~~~~-~~~~~iw~~lk 256 (262)
T PF14500_consen 230 QTLKACIENYGADSLS-PHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHCCHHHHH-HHHHHHHHHHH
Confidence 77776543 4444333 35555555443
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.14 E-value=69 Score=41.35 Aligned_cols=133 Identities=17% Similarity=0.135 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhhc----CC---CcchhHHHHHHHHHHHHh--hcCccchhchHHH-HHHHHHHhcCCchhHHHHHHHHHH
Q 000194 150 VEFQVKMALDWLR----GD---RVEYRRFAAVLILKEMAE--NASTVFNVHVAEF-VDAIWVALRDPTLAVRERAVEALR 219 (1880)
Q Consensus 150 v~~~~~~~~~~l~----~~---~~~~~R~aA~~~l~~la~--~~p~~l~~~l~~i-~~~i~~~l~D~~~~VR~aA~~al~ 219 (1880)
+...+..+...|. ++ ++.....+|+.++..+.. .-++-+..-+..+ ++.+..+++++.--.|..||+.+.
T Consensus 406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is 485 (970)
T COG5656 406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence 5566666666662 11 223445678888777765 3344444444444 477889999999999999999877
Q ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc--chhhhHHHHHHHHHHHHHH
Q 000194 220 ACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN--TGEFMMSRYREVAEIVLRY 289 (1880)
Q Consensus 220 ~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~--~~~~~~~~~~~i~~~ll~~ 289 (1880)
.+....+ + +......++.+...+.++. ..++..|.+|+..++.+ ..+.+..|..++++.++.+
T Consensus 486 ~~eeDfk--d----~~ill~aye~t~ncl~nn~-lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsL 550 (970)
T COG5656 486 TIEEDFK--D----NGILLEAYENTHNCLKNNH-LPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSL 550 (970)
T ss_pred HHHHhcc--c----chHHHHHHHHHHHHHhcCC-cchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHh
Confidence 6633222 1 1234566777777777754 45566677789888873 3345556666666666653
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=90.05 E-value=13 Score=42.79 Aligned_cols=112 Identities=17% Similarity=0.104 Sum_probs=74.9
Q ss_pred CChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCC
Q 000194 1611 GPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLD 1690 (1880)
Q Consensus 1611 ~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~ 1690 (1880)
..+...+..+..+...|+ ..+|+..+++++..... .....+.++.+|......
T Consensus 31 ~~~~~~~~~g~~~~~~~~---~~~A~~~~~~~~~~~p~-------------------~~~~~~a~~~la~~~~~~----- 83 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGD---YTEAIKYFEALESRYPF-------------------SPYAEQAQLDLAYAYYKS----- 83 (235)
T ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-------------------chhHHHHHHHHHHHHHhc-----
Confidence 457788889998888884 68899999987754321 122334556666665543
Q ss_pred CCCHHHHHHHHHHHHhhcccchH---HHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1691 DESIPEIIAAYRNATQCATKWGK---AWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1691 ~~~~~~i~~~y~~a~~~~~~~~k---~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
...++.+..|+.+++.+|+... +|+..|..+++.+... .........|++.|-+.+...
T Consensus 84 -~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~------~~~~~~~~~A~~~~~~~~~~~ 145 (235)
T TIGR03302 84 -GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRV------DRDQTAAREAFEAFQELIRRY 145 (235)
T ss_pred -CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccc------cCCHHHHHHHHHHHHHHHHHC
Confidence 3578899999999999997765 6777777766542110 111234567788887777654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.05 E-value=7.6 Score=48.66 Aligned_cols=140 Identities=21% Similarity=0.208 Sum_probs=91.7
Q ss_pred CchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHH
Q 000194 478 GSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL 557 (1880)
Q Consensus 478 ~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1880)
+++.+.+=+.-|+++.. |-.+ .. -..+..++++++-..|-+-...|+.++.-... ..++.++..+.
T Consensus 278 Gpk~islFl~kls~l~p-~i~l-rq-~~~~~~LLdses~tlRc~~~EicaN~V~~~~~-----------d~qm~e~~~~~ 343 (1128)
T COG5098 278 GPKDISLFLNKLSELSP-GIML-RQ-YEHFDELLDSESFTLRCCFLEICANLVEHFKK-----------DGQMVEHYKQK 343 (1128)
T ss_pred ChHHHHHHHHHHhhcCc-hHHH-HH-HHHHHHHhcccchhHHHHHHHHHHHHHHHHhc-----------chhhHhhHHHH
Confidence 44445555555665522 2111 11 13456889998999998888888888753221 00223334555
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcch---hh-ccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccc
Q 000194 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDD---FL-AQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY 633 (1880)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~---~L-~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~ 633 (1880)
+..+++-|.+ -+.|..|.+|..+++.+.. -||. +. ...++.+....+++|.+..||+.|++++..|...+|-.
T Consensus 344 ~~~Lv~ll~E-Rl~D~~py~RtKalqv~~k--ifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~ 420 (1128)
T COG5098 344 LNDLVGLLVE-RLSDTYPYTRTKALQVLEK--IFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFA 420 (1128)
T ss_pred HHHHHHHHHH-HhhccchHHHHHHHHHHHH--HHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChh
Confidence 6666654444 4689999999999887741 2221 11 23578888899999999999999999999999999854
Q ss_pred c
Q 000194 634 V 634 (1880)
Q Consensus 634 v 634 (1880)
.
T Consensus 421 ~ 421 (1128)
T COG5098 421 S 421 (1128)
T ss_pred h
Confidence 3
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.01 E-value=70 Score=41.27 Aligned_cols=125 Identities=12% Similarity=0.038 Sum_probs=82.6
Q ss_pred hHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHh--Ccccc
Q 000194 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRN--CERLI 677 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~--~~~~~ 677 (1880)
++..+...++++.--.|..|++.+.++....+... .+-+......+.+++ ++-.++.+|+.++..++.+ ..+.+
T Consensus 461 iv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~--ill~aye~t~ncl~n--n~lpv~ieAalAlq~fi~~~q~h~k~ 536 (970)
T COG5656 461 IVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNG--ILLEAYENTHNCLKN--NHLPVMIEAALALQFFIFNEQSHEKF 536 (970)
T ss_pred HHHHhhHhhcCcccchHHHHHHHHHHHHHhcccch--HHHHHHHHHHHHHhc--CCcchhhhHHHHHHHHHhchhhhHHH
Confidence 34555566788887788999999999866555321 122222223333444 3556678888899888865 34567
Q ss_pred cCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHH
Q 000194 678 RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE 736 (1880)
Q Consensus 678 ~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~ 736 (1880)
..+++++|+-++..-++- +.++.+ .++..+.....+++.||.++++..+.+
T Consensus 537 sahVp~tmekLLsLSn~f-----eiD~LS---~vMe~fVe~fseELspfa~eLa~~Lv~ 587 (970)
T COG5656 537 SAHVPETMEKLLSLSNTF-----EIDPLS---MVMESFVEYFSEELSPFAPELAGSLVR 587 (970)
T ss_pred HhhhhHHHHHHHHhcccc-----cchHHH---HHHHHHHHHhHHhhchhHHHHHHHHHH
Confidence 788999999888865542 333333 345556677788888988888777766
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=89.85 E-value=6.8 Score=41.06 Aligned_cols=111 Identities=13% Similarity=-0.065 Sum_probs=81.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCc
Q 000194 1572 WLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPV 1651 (1880)
Q Consensus 1572 ~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~ 1651 (1880)
|...+....+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+.- .. .
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~----------~~~a~~~lg~~~~~~g~---~~~A~~~y~~Al~l-~p--~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW----------SWRAHIALAGTWMMLKE---YTTAINFYGHALML-DA--S 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------cHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhc-CC--C
Confidence 556678888999999999999998887653 47788889999999994 68899999887642 11 0
Q ss_pred cccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1652 IQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1652 ~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
...-.-.++.|+..+|+ .++.+..|..|++.+|+....|..-+....
T Consensus 91 ------------~~~a~~~lg~~l~~~g~-------------~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 91 ------------HPEPVYQTGVCLKMMGE-------------PGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred ------------CcHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 01112234555555444 578899999999999999999976665543
|
|
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
Probab=89.71 E-value=18 Score=45.19 Aligned_cols=238 Identities=11% Similarity=0.105 Sum_probs=127.4
Q ss_pred HHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHH-HHHHHHHhhcccCCChHHHHHHHHHHHHHhhh-CCCCc
Q 000194 69 QLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVS-KFSNYMRTVFEVKRDREILVLASKVLGHLARA-GGAMT 146 (1880)
Q Consensus 69 ~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~-~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~-~g~~~ 146 (1880)
.+..++..+++|+|+++|..--..+-.+.+...+. ...++ .+.+.+.+.+.......-+...-+.+|.+... .-...
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~-r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk 211 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNL-RSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK 211 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence 46777888999999999985555555544322121 22232 22333443333233445566677778877764 22345
Q ss_pred hhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Q 000194 147 ADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIE 226 (1880)
Q Consensus 147 ~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~ 226 (1880)
.++..+..+.+++......-......=..++..+.+..|+...+.+..++. .|.. .++.-.| -.|+.+.+++.
T Consensus 212 ~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk-~WP~-t~s~Kev-----~FL~el~~il~ 284 (409)
T PF01603_consen 212 EEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLK-HWPK-TNSQKEV-----LFLNELEEILE 284 (409)
T ss_dssp HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHH-HS-S-S-HHHHH-----HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH-hCCC-CCchhHH-----HHHHHHHHHHH
Confidence 667777777777766544444444444555566666677665544444332 2332 2222111 22333333333
Q ss_pred hhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh-----hcchhHHHHHH
Q 000194 227 KRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL-----EHRDRLVRLSI 301 (1880)
Q Consensus 227 ~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~-----~~~~~~Vr~~~ 301 (1880)
.-++.........++..+..++.++. ..+...|+...+.= .--..+..+-..+++.++..+ +|=+..||..+
T Consensus 285 ~~~~~~f~~i~~~lf~~la~ci~S~h-~qVAErAl~~w~n~--~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a 361 (409)
T PF01603_consen 285 VLPPEEFQKIMVPLFKRLAKCISSPH-FQVAERALYFWNNE--YFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLA 361 (409)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHTSSS-HHHHHHHHGGGGSH--HHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHCCH--HHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 22333445566778888888888875 56666666543210 000122223333444444443 34588999999
Q ss_pred HHHhHhHhhhChhhHH
Q 000194 302 TSLLPRIAHFLRDRFV 317 (1880)
Q Consensus 302 ~~~i~~la~~~~~~f~ 317 (1880)
..++..+-..+++-|-
T Consensus 362 ~~vl~~l~~~d~~lf~ 377 (409)
T PF01603_consen 362 QNVLKILMEMDPKLFD 377 (409)
T ss_dssp HHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHhCHHHHH
Confidence 9999999998887664
|
The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A. |
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.63 E-value=7.5 Score=48.89 Aligned_cols=180 Identities=13% Similarity=0.114 Sum_probs=107.6
Q ss_pred HHHHHHhCCCCHhHHHHHHHHHHhhhcCC-cccccHHHHHHHH---HHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccc
Q 000194 602 SAIFAALNDEDFDVREYAISVAGRLSEKN-PAYVLPALRRHLI---QLLTYLEQSSADNKCREESAKLLGCLIRNCERLI 677 (1880)
Q Consensus 602 ~~L~~~l~D~~~~VR~~a~~~l~~l~~~~-p~~v~p~l~~~l~---~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~ 677 (1880)
+.|+.+|.-.+.+||..|..++-.+...- |..-.......+. ..+..|..+ +-+.+|..|...+..+....=..+
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d-~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLED-PYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHc
Confidence 34566677777888888888776554432 2211111222221 133444445 567889888888777776543333
Q ss_pred cCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 000194 678 RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1880)
Q Consensus 678 ~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l 757 (1880)
.| .|+.-++.++-++...+..++|+..++.++..++.+ ...-+-+.+++|.+-..|+|. +..+|-+++.-|..+
T Consensus 256 P~---~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n--p~sh~~le~~Lpal~~~l~D~-se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 256 PP---TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN--PLSHPLLEQLLPALRYSLHDN-SEKVRVAFVDMLLKI 329 (1005)
T ss_pred CH---HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC--ccchhHHHHHHHhcchhhhcc-chhHHHHHHHHHHHH
Confidence 33 445555555544322234668888999999888653 455677889999888899987 577898888777765
Q ss_pred HhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHH
Q 000194 758 VQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRR 792 (1880)
Q Consensus 758 ~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~ 792 (1880)
-..-- ++.+... -++.++..|..++.+..|+
T Consensus 330 k~vra--~~f~~I~--~~d~~l~~L~~d~~~v~rr 360 (1005)
T KOG1949|consen 330 KAVRA--AKFWKIC--PMDHILVRLETDSRPVSRR 360 (1005)
T ss_pred Hhhhh--hhhhccc--cHHHHHHHHhccccHHHHH
Confidence 32221 1222222 2566677776665444444
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=89.46 E-value=80 Score=41.11 Aligned_cols=244 Identities=14% Similarity=0.087 Sum_probs=133.3
Q ss_pred CCHHHHHHHHHHHcCCCCchhhHHHH-HHHHHHHHHhhhChHHH--HHHHHHHH-HHHHhhhcCC----C---hhhhhhH
Q 000194 21 GSLDALNRILADLCTHGNPKEGASLA-LRKHIEEQARDLGGEAF--SRFMDQLY-DRISGLLESN----D---AAENLGA 89 (1880)
Q Consensus 21 ~~~~~~~~l~~~l~s~~~~~~~aa~~-l~~~v~~~~~~~~~~~~--~~~~~~l~-~~i~~l~~s~----~---~~~r~~~ 89 (1880)
..++.+.+.++-|+++.++.+=|+.- +.+++ ..-+.... .+.++.+- +.+..|+++. + ...+--|
T Consensus 2 ~~~~~l~~c~~lL~~~~D~~rfagL~lvtk~~----~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~La 77 (543)
T PF05536_consen 2 GQSASLEKCLSLLKSADDTERFAGLLLVTKLL----DADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLA 77 (543)
T ss_pred CchHHHHHHHHHhccCCcHHHHHHHHHHHHcC----CCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHH
Confidence 35677999999999987444424322 23333 22111111 12333332 2233455541 1 2223335
Q ss_pred HHHHhHhhccccCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH-HHHHHHhhhcCCCcc
Q 000194 90 LRAIDELIDVALGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF-QVKMALDWLRGDRVE 167 (1880)
Q Consensus 90 i~ai~~Li~~~~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~-~~~~~~~~l~~~~~~ 167 (1880)
+..+.++...+.-. .+.++.+...++ .++....+.++...+.++|..++.++.+ ...+++. -++.+.+.+.. .+
T Consensus 78 vsvL~~f~~~~~~a~~~~~~~~IP~Ll-e~l~~~s~~~~v~dalqcL~~Ias~~~G-~~aLl~~g~v~~L~ei~~~--~~ 153 (543)
T PF05536_consen 78 VSVLAAFCRDPELASSPQMVSRIPLLL-EILSSSSDLETVDDALQCLLAIASSPEG-AKALLESGAVPALCEIIPN--QS 153 (543)
T ss_pred HHHHHHHcCChhhhcCHHHHHHHHHHH-HHHHcCCchhHHHHHHHHHHHHHcCcHh-HHHHHhcCCHHHHHHHHHh--Cc
Confidence 55555554422111 233444444444 4443343458999999999999865321 1122222 34455555443 33
Q ss_pred hhHHHHHHHHHHHHhhcCc-c---chhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh--hchhhHHHHHHHHH
Q 000194 168 YRRFAAVLILKEMAENAST-V---FNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK--RETRWRVQWYYRMF 241 (1880)
Q Consensus 168 ~~R~aA~~~l~~la~~~p~-~---l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~--r~~~~~~~~~~~~l 241 (1880)
.....|+.+|..+...... . -...+..+++.+-..+...+...+-..++-|..++..... ......+.|...+.
T Consensus 154 ~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~ 233 (543)
T PF05536_consen 154 FQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLR 233 (543)
T ss_pred chHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHH
Confidence 4456677777766655442 2 2345566777676767666666666666666666543310 01124567988888
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHHHcch
Q 000194 242 EATQDGLGRNAPVHSIHGSLLAVGELLRNTG 272 (1880)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~ 272 (1880)
..+..-+.+.-....|..++.+...+++..|
T Consensus 234 ~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 234 KGLRDILQSRLTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 8887777766556789999999999988544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=89.39 E-value=1.2 Score=41.65 Aligned_cols=81 Identities=12% Similarity=0.253 Sum_probs=55.7
Q ss_pred hcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhH
Q 000194 1367 LQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQM 1446 (1880)
Q Consensus 1367 lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~ 1446 (1880)
.|+|++|+..|++.....+...+ ......+-.|+..+|+|+......+.. ..++ ......-+.+.+.+.+|+|+.-
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~-~~~~~~la~~~~~~~~y~~A~~~~~~~--~~~~-~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPN-SAYLYNLAQCYFQQGKYEEAIELLQKL--KLDP-SNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHH-HHHHHHHHHHHHHTTHHHHHHHHHHCH--THHH-CHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChh-HHHHHHHHHHHHHCCCHHHHHHHHHHh--CCCC-CCHHHHHHHHHHHHHhCCHHHH
Confidence 47899999999998876553211 345566889999999999888887651 1111 1124445779999999999987
Q ss_pred HHHHh
Q 000194 1447 AEYVS 1451 (1880)
Q Consensus 1447 ~~~~~ 1451 (1880)
.+.+.
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76554
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=89.34 E-value=5 Score=53.14 Aligned_cols=137 Identities=21% Similarity=0.232 Sum_probs=86.3
Q ss_pred HHHHHHHHhhhcCC----ChhhhhhHHHHHhHhhccccCcc----hhHHHHHHHHHHhhccc---CCChHHHHHHHHHHH
Q 000194 68 DQLYDRISGLLESN----DAAENLGALRAIDELIDVALGEN----ASKVSKFSNYMRTVFEV---KRDREILVLASKVLG 136 (1880)
Q Consensus 68 ~~l~~~i~~l~~s~----~~~~r~~~i~ai~~Li~~~~~~~----~~~~~~~~~~L~~~l~~---~~d~~v~~~aa~~l~ 136 (1880)
.++.+.+++|++++ +..-+.++++++.+++.....+. ...+..+.+||...+.. ..|.+.+-..-++||
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 34566677787753 44567889999999986422222 12234566666655542 356777788888998
Q ss_pred HHhhhCCCCchhHHHHHHHHHHhhhc--CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHH
Q 000194 137 HLARAGGAMTADEVEFQVKMALDWLR--GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERA 214 (1880)
Q Consensus 137 ~L~~~~g~~~~~~v~~~~~~~~~~l~--~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA 214 (1880)
.+... .. ++.+..++. ...+...|.+|+.+|+-++..+|....+.+-+|+- =.+.+++||-+|
T Consensus 472 N~g~~---~~-------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~-----n~~e~~EvRiaA 536 (574)
T smart00638 472 NAGHP---SS-------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYL-----NRAEPPEVRMAA 536 (574)
T ss_pred ccCCh---hH-------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHc-----CCCCChHHHHHH
Confidence 76543 11 223333333 23455789999999999999999865544433331 124467899999
Q ss_pred HHHHH
Q 000194 215 VEALR 219 (1880)
Q Consensus 215 ~~al~ 219 (1880)
..++-
T Consensus 537 ~~~lm 541 (574)
T smart00638 537 VLVLM 541 (574)
T ss_pred HHHHH
Confidence 88764
|
|
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=89.30 E-value=5.1 Score=48.63 Aligned_cols=141 Identities=18% Similarity=0.255 Sum_probs=91.3
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhC---CCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHH
Q 000194 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALN---DEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLL 646 (1880)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~---D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l 646 (1880)
+.+.+...|..++.+|..+....+.+ |-++.++..... +.+..+-...++.+..|..+.--.+.|++..++...+
T Consensus 187 ~~~~~~~~r~~aL~sL~tD~gl~~Ll--Pyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vl 264 (343)
T cd08050 187 LVGSNEEKRREALQSLRTDPGLQQLL--PYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVL 264 (343)
T ss_pred HhCCCHHHHHHHHHHhccCCCchhhh--hHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHH
Confidence 34577889999999997544332211 222333322111 1145555667777777777665567899998887777
Q ss_pred HHHhc--------CCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHH
Q 000194 647 TYLEQ--------SSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDL 715 (1880)
Q Consensus 647 ~~l~~--------~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~L 715 (1880)
+.+-. .++.+..|+.|+.+++.+++.++....-.-+.|+..+.+.+.++.. .....-+++.+++.+
T Consensus 265 tclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~---~~~~~YGAi~GL~~l 338 (343)
T cd08050 265 TCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKK---PLTTHYGAIVGLSAL 338 (343)
T ss_pred HHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCC---CcchhhHHHHHHHHh
Confidence 65521 1134688999999999999998776666667788899999887631 333355666666554
|
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=89.26 E-value=25 Score=39.56 Aligned_cols=160 Identities=14% Similarity=0.113 Sum_probs=101.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|...+.+..+.|+++.|...+.++....+. .+......+.++...|+ ..+|+..++..+....
T Consensus 64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~~~ 130 (234)
T TIGR02521 64 DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN----------NGDVLNNYGTFLCQQGK---YEQAMQQFEQAIEDPL 130 (234)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHccc---HHHHHHHHHHHHhccc
Confidence 4678888999999999999999999988876542 35666777888888884 6789998888764211
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1880)
. ......+..+|.-.... ...++....|.++.+.+|+...+|..+|......
T Consensus 131 ~--------------------~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-- 182 (234)
T TIGR02521 131 Y--------------------PQPARSLENAGLCALKA------GDFDKAEKYLTRALQIDPQRPESLLELAELYYLR-- 182 (234)
T ss_pred c--------------------ccchHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc--
Confidence 0 00111222233332222 2357788999999999999888998888775541
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHH
Q 000194 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQ 1786 (1880)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~ 1786 (1880)
+ -...|+..|-+++... ........-+..+....|+..+..
T Consensus 183 -----~-------~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 183 -----G-------QYKDARAYLERYQQTY------NQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred -----C-------CHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHhhHHHHH
Confidence 1 1235566666665542 122333344445555656654433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=89.01 E-value=24 Score=41.88 Aligned_cols=230 Identities=10% Similarity=0.050 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhc-cc--cCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHh
Q 000194 63 FSRFMDQLYDRISGLLESNDAAENLGALRAIDELID-VA--LGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLA 139 (1880)
Q Consensus 63 ~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~-~~--~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~ 139 (1880)
+++|.+++.+.+..+=+.++|.+-.+.+.=+...+. .. ...-+.+ ..+..-|.+|+.|.--..|=..|-++...+-
T Consensus 5 ~kky~~~v~k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k-~~v~krLaqCL~P~LPsGVH~KaLevY~~IF 83 (307)
T PF04118_consen 5 YKKYNAEVEKALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHK-LQVSKRLAQCLNPALPSGVHQKALEVYEYIF 83 (307)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Confidence 344444444444433344555554444444444443 11 0111111 2345556666655434566666777776665
Q ss_pred hhCCC-CchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHH
Q 000194 140 RAGGA-MTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEAL 218 (1880)
Q Consensus 140 ~~~g~-~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al 218 (1880)
+.-|. ...+-+.-....+++.++ ...-..|-.-+-++...-...+..+.|.+..++-.++.||-|...++-+.+...+
T Consensus 84 ~~ig~~~L~~dl~i~~~GLfpl~~-~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll 162 (307)
T PF04118_consen 84 ERIGPDGLAQDLPIYSPGLFPLFS-YASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLL 162 (307)
T ss_pred HhcCHHHHHhhcHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHH
Confidence 54221 112222223344444442 1222334444444444444566688999999999999999999998988888777
Q ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch------------hhhHHHHHHHHHHH
Q 000194 219 RACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG------------EFMMSRYREVAEIV 286 (1880)
Q Consensus 219 ~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~------------~~~~~~~~~i~~~l 286 (1880)
..+...+. ...++..+.-.+.. + .+.|.+|+..+..-+.... ..+.+.-+=++..+
T Consensus 163 ~~l~~~v~------~~~F~~~lwl~ii~---s---p~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al 230 (307)
T PF04118_consen 163 DKLKEAVG------DKYFWQCLWLCIIT---S---PSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRAL 230 (307)
T ss_pred HHHHHhcC------hhHHHHHHHHHHhc---C---cchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHH
Confidence 66654433 12455555555443 2 3668887775543322111 11222233345566
Q ss_pred HHHhhcchhHHHHHHHHHhH
Q 000194 287 LRYLEHRDRLVRLSITSLLP 306 (1880)
Q Consensus 287 l~~~~~~~~~Vr~~~~~~i~ 306 (1880)
...+++.+..|++.+++.+=
T Consensus 231 ~~~L~D~~iLVqR~~LDlLl 250 (307)
T PF04118_consen 231 CACLEDENILVQRGFLDLLL 250 (307)
T ss_pred HHHhCCchHHHHHHHHHHHH
Confidence 66666777777766655443
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.83 E-value=1e+02 Score=41.40 Aligned_cols=112 Identities=14% Similarity=0.054 Sum_probs=64.2
Q ss_pred HHHHHHHhhcchhHHHHHHHHHhHhHhhh----ChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhh
Q 000194 283 AEIVLRYLEHRDRLVRLSITSLLPRIAHF----LRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFH 358 (1880)
Q Consensus 283 ~~~ll~~~~~~~~~Vr~~~~~~i~~la~~----~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la~~v~~~~~p 358 (1880)
.-.|+..+-+.++.|+..+..++-++|.. .+..|++.-.+-++..+-..|+....-..+-..+.-+....+.+..|
T Consensus 591 ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~~~s~~~~~Vl~vVl~~s~~~~i~ 670 (1014)
T KOG4524|consen 591 LYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTSGMSPRVPDVLMVVLQYSDYGTIP 670 (1014)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccCCCCchhHHHHHHHhhcCCCCchh
Confidence 33455555678888998888888777742 24555543333344444444442222233444455566666667789
Q ss_pred hhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhC
Q 000194 359 YLPTITSHLREAIAPRRGKPSLEALACVGNIARAMG 394 (1880)
Q Consensus 359 ~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g 394 (1880)
+++++++.+...+-......+..-+..+-.+.+..|
T Consensus 671 ~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~ 706 (1014)
T KOG4524|consen 671 NLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMK 706 (1014)
T ss_pred hHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHh
Confidence 999999999988855444333333333333444444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.62 E-value=2.8 Score=50.26 Aligned_cols=167 Identities=14% Similarity=0.160 Sum_probs=97.9
Q ss_pred HHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh-----hhccC---CCC-------
Q 000194 1672 ARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH-----YTLRG---LPS------- 1736 (1880)
Q Consensus 1672 a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~-----~~~~~---~~~------- 1736 (1880)
+-+..+.|.=-.++. +...++.+|+.|++++|..++||+.+++.+.-+=-+ |-++. .|.
T Consensus 364 ~~aWTLmGHEyvEmK------Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~a 437 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMK------NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVA 437 (559)
T ss_pred hHHHHHhhHHHHHhc------ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHH
Confidence 445677777666663 347789999999999999999998877665421100 00000 011
Q ss_pred -----chhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHHHHHHHHHHh
Q 000194 1737 -----VAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIAR 1811 (1880)
Q Consensus 1737 -----~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQLiaR 1811 (1880)
....-...||+||-+++.++. ..-.-+.||-.|.-+.++..+....+++++... ...
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~d------te~~~l~~LakLye~l~d~~eAa~~yek~v~~~-----------~~e- 499 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLGD------TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-----------ELE- 499 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhccc------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----------Hhh-
Confidence 123456899999999998862 222346888888888888777666666665321 000
Q ss_pred ccCCChhHHH---HHHHHHHHHHhhCchhhHHHHHHHhcCCcHHHHHHHHHHHHHHhhc
Q 000194 1812 IHSNNRAVRE---LIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQH 1867 (1880)
Q Consensus 1812 i~~~~~~v~~---~l~~lL~~i~~~hPqa~ly~L~~~~kS~~~~R~~~a~~Il~~~~~~ 1867 (1880)
+..++...+ .+..-- .=.+++--|..|...+..- +++ .+-|+.++..++++
T Consensus 500 -g~~~~~t~ka~~fLA~~f-~k~~~~~~As~Ya~~~~~~--~~e-~eeak~LlReir~~ 553 (559)
T KOG1155|consen 500 -GEIDDETIKARLFLAEYF-KKMKDFDEASYYATLVLKG--ETE-CEEAKALLREIRKI 553 (559)
T ss_pred -cccchHHHHHHHHHHHHH-HhhcchHHHHHHHHHHhcC--Cch-HHHHHHHHHHHHHh
Confidence 111111111 111111 1224556677777665544 333 44477788777764
|
|
| >COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=88.51 E-value=20 Score=40.55 Aligned_cols=147 Identities=18% Similarity=0.229 Sum_probs=87.9
Q ss_pred chHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 000194 191 HVAEFVDAIWVALRD-PTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLR 269 (1880)
Q Consensus 191 ~l~~i~~~i~~~l~D-~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~ 269 (1880)
.+.-.++.+..+|.| .+...|+||...|+.=..+ .+..+.+..-+-+++.+.+++ -+....-+.+...|+.
T Consensus 194 ELq~YF~kvisal~dEs~~~~r~aAl~sLr~dsGl-----hQLvPYFi~f~~eqit~Nl~n---l~~LtTv~~m~~sLL~ 265 (450)
T COG5095 194 ELQMYFDKVISALLDESDEQTRDAALESLRNDSGL-----HQLVPYFIHFFNEQITKNLKN---LEKLTTVVMMYSSLLK 265 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-----HHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHhc
Confidence 344455566666654 4578899999877631110 123445555555666666654 2445555567778888
Q ss_pred cchhhhHHHHHHHHHHHHHHh----------hcchhHHHHHHHHHhHhHhhhChhhHHHHHH---HHHHHHHHH-hhcCC
Q 000194 270 NTGEFMMSRYREVAEIVLRYL----------EHRDRLVRLSITSLLPRIAHFLRDRFVTNYL---KICMNHILT-VLRIP 335 (1880)
Q Consensus 270 ~~~~~~~~~~~~i~~~ll~~~----------~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl---~~~~~~Ll~-~L~~~ 335 (1880)
+..-|+.||+.++++.++.++ +|..-.+|..+..+++.+.. .|...|- +++...++. .|+++
T Consensus 266 N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~----~F~~~YktLkPRvtrTllKafLD~~ 341 (450)
T COG5095 266 NKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFS----NFSSSYKTLKPRVTRTLLKAFLDRE 341 (450)
T ss_pred CCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHh----hhhHhhhhhchHHHHHHHHHHHhcc
Confidence 877889999999888777654 12223478888888877664 3544342 455555544 34444
Q ss_pred CCc---chHHHHHHHHH
Q 000194 336 AER---DSGFIALGEMA 349 (1880)
Q Consensus 336 ~~r---~~a~~alg~la 349 (1880)
+.- -.|+.+++.+.
T Consensus 342 k~~sT~YGalkgls~l~ 358 (450)
T COG5095 342 KTESTQYGALKGLSILS 358 (450)
T ss_pred cccchhhhhhhhhhhhc
Confidence 422 34566665554
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.24 E-value=10 Score=48.06 Aligned_cols=108 Identities=16% Similarity=0.083 Sum_probs=77.0
Q ss_pred chHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 000194 680 YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQ 759 (1880)
Q Consensus 680 y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~ 759 (1880)
++.+++..++.....+ +..|+-.++.-+..+....++--...++.+...+...+.|. .+.+|..|+.+|+.+-.
T Consensus 82 lV~~~f~hlLRg~Esk-----dk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESK-----DKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR-EPNVRIQAVLALSRLQG 155 (892)
T ss_pred HHHHHHHHHHhcccCc-----chhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhc
Confidence 4566666777766543 67788777766666655444444555667777777778876 46799999999998764
Q ss_pred hcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000194 760 STGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1880)
Q Consensus 760 ~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg 799 (1880)
..+. + --++...+..+++++.+++||++++..|.
T Consensus 156 d~~d---e---e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 156 DPKD---E---ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred CCCC---C---cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 3332 2 22578888888889999999999987764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.02 E-value=56 Score=41.72 Aligned_cols=74 Identities=12% Similarity=0.149 Sum_probs=37.2
Q ss_pred cCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhH
Q 000194 1368 QRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQM 1446 (1880)
Q Consensus 1368 g~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~ 1446 (1880)
-+|.+|+.+|++......|.. + .....-|.+.+|++|+.-....+..-.. + -+|.+-..++--..|||.+==.+
T Consensus 333 y~~~~A~~~~~klp~h~~nt~--w-vl~q~GrayFEl~~Y~~a~~~F~~~r~~-~-p~rv~~meiyST~LWHLq~~v~L 406 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTG--W-VLSQLGRAYFELIEYDQAERIFSLVRRI-E-PYRVKGMEIYSTTLWHLQDEVAL 406 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCch--H-HHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-cccccchhHHHHHHHHHHhhHHH
Confidence 358999999998333222210 0 1122234456777776544433321100 1 12223334667799999764333
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.90 E-value=8.1 Score=50.93 Aligned_cols=156 Identities=19% Similarity=0.123 Sum_probs=91.5
Q ss_pred HHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHH-HHHHHHhhcccC--CChHHHHHHHHHHHHHhhhCCCCch
Q 000194 71 YDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSK-FSNYMRTVFEVK--RDREILVLASKVLGHLARAGGAMTA 147 (1880)
Q Consensus 71 ~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~-~~~~L~~~l~~~--~d~~v~~~aa~~l~~L~~~~g~~~~ 147 (1880)
+..+.+|++|+-.+-|--=+.--..++.++..-....+.. -..|...++.++ -+.+-+..||=+|.-++..-..-+.
T Consensus 514 FPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~ 593 (1387)
T KOG1517|consen 514 FPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQK 593 (1387)
T ss_pred HHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHH
Confidence 4556688888766656422222222333321110111111 122433444331 1357788888888888774111122
Q ss_pred hHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 000194 148 DEVE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVI 225 (1880)
Q Consensus 148 ~~v~-~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~-~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1880)
..++ .++..|++.|.++..+-.|+=.+.+|+.|-++-+. .....=..-.+.+...|+||-++||-||.-||+.++...
T Consensus 594 acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 594 ACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 2222 36777888886654567788888888888776443 222222345577888999999999999999999998754
Q ss_pred h
Q 000194 226 E 226 (1880)
Q Consensus 226 ~ 226 (1880)
+
T Consensus 674 ~ 674 (1387)
T KOG1517|consen 674 S 674 (1387)
T ss_pred c
Confidence 4
|
|
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.56 E-value=38 Score=43.78 Aligned_cols=160 Identities=15% Similarity=0.172 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchh-hhh-hhhHHHHHHhhcCCCc
Q 000194 965 PVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLD-EHM-HLLLPALIRLFKVDAP 1042 (1880)
Q Consensus 965 ~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~-~~~-~~ilp~l~~~l~~~~~ 1042 (1880)
.+++=.+.|..-++.+. +...++|.+...+++.+ ......+++.+..+.+.++ ..+ ..|+|.|..++-....
T Consensus 369 ~i~e~mdlL~~Kt~~e~--~~~~IlplL~~S~~~~~----~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~ 442 (700)
T KOG2137|consen 369 FILENMDLLKEKTPPEE--VKEKILPLLYRSLEDSD----VQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN 442 (700)
T ss_pred hHHhhHHHHHhhCChHH--HHHHHHHHHHHHhcCcc----hhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence 34444444455444432 34678999999997643 3333445555544455444 112 4578888888655567
Q ss_pred HHHHHHHHHHHHhhcccccccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH-hc-ccccc--chhHHHHHHHhCC
Q 000194 1043 VDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHA-LG-EDFTI--FIPSIHKLLLKHR 1118 (1880)
Q Consensus 1043 ~~vr~~ai~~l~~l~~~~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~-~g-~~f~~--fip~i~~~l~~~~ 1118 (1880)
..+|..++-+++.+++..|- .-+...+.++.+.....++++.-..+.+.-.++.. .+ .++.. -+|.+........
T Consensus 443 ~~vkvn~L~c~~~l~q~lD~-~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 443 LYVKVNVLPCLAGLIQRLDK-AAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 88999999999999866552 22445566777888888888877776666555554 22 35443 3688888888877
Q ss_pred CCchhHHHHHHHH
Q 000194 1119 LRHKEFEEIEGRL 1131 (1880)
Q Consensus 1119 ~~~~~~~~~~~~~ 1131 (1880)
.+-.+|..++..+
T Consensus 522 L~~~Qy~~~m~~i 534 (700)
T KOG2137|consen 522 LNGEQYNKYMSEI 534 (700)
T ss_pred ccHHHHHHHHHHH
Confidence 8888888776544
|
|
| >PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion | Back alignment and domain information |
|---|
Probab=87.56 E-value=0.82 Score=36.09 Aligned_cols=40 Identities=30% Similarity=0.423 Sum_probs=32.1
Q ss_pred HHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHH
Q 000194 176 ILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEA 217 (1880)
Q Consensus 176 ~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~a 217 (1880)
++..+.+..|+.+.. +.+...|...+.|+++.||+||.+.
T Consensus 2 ~l~~iv~~dp~ll~~--~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDS--SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccch--HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 456677777876643 3788888899999999999999875
|
|
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
Probab=87.54 E-value=11 Score=47.16 Aligned_cols=204 Identities=14% Similarity=0.186 Sum_probs=116.3
Q ss_pred HhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCc---
Q 000194 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE--- 674 (1880)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~--- 674 (1880)
..++..|+..++.+++.-|.....++.++-...+. ..+.+|+.+...+...-+.......-.+.++++|.++....
T Consensus 132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~-~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~pl 210 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPN-LRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPL 210 (409)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TT-THHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS-
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCC
Confidence 35788888899999999999999999997766654 34666776666555443331333345678888888886432
Q ss_pred ------------------ccccCchHHHHHHHHHHhccCCC-------------CCCChhHHHHHHHHHHHHHHhcC-Cc
Q 000194 675 ------------------RLIRPYIAPIHKALVARLLEGTG-------------INANNGIISGVLVTVGDLARVGG-FG 722 (1880)
Q Consensus 675 ------------------~~~~py~~~il~~ll~~l~~~~~-------------~~~~~~v~~~~~~~l~~La~~~g-~~ 722 (1880)
+.+..|.+++...+...+..+.. +..++.-....+.-++.+....+ .+
T Consensus 211 k~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~ 290 (409)
T PF01603_consen 211 KEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEE 290 (409)
T ss_dssp -HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHH
T ss_pred cHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHH
Confidence 22334555666655555543200 00011111122333444444443 46
Q ss_pred hhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHH--HHHhhcCcccccCCcchHHHHHHHHHh----cCCCCHHHHHHHHH
Q 000194 723 MRQYISELMPLIVEALLDGAAVTKREVAVSTLG--QVVQSTGYVITPYNEYPQLLGLLLKML----NGELVWSTRREVLK 796 (1880)
Q Consensus 723 ~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg--~l~~~~~~~i~p~~~~p~ll~~Ll~~L----~~~~~~~vr~~~l~ 796 (1880)
+.+....+...+..++... +..+-+.|+..+. .++.. +..+ ...+++.+...| ++.-+..||..+..
T Consensus 291 f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~~~~~l----i~~~--~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~ 363 (409)
T PF01603_consen 291 FQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNEYFLSL----ISQN--SRVILPIIFPALYRNSKNHWNQTVRNLAQN 363 (409)
T ss_dssp HHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSHHHHHH----HHCT--HHHHHHHHHHHHSSTTSS-SSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCHHHHHH----HHhC--hHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777777888888887754 3555555544332 11111 1111 124555555555 33336789999999
Q ss_pred HHHHHcccCccch
Q 000194 797 VLGIMGALDPHAH 809 (1880)
Q Consensus 797 ~lg~lgaldp~~~ 809 (1880)
++..+.-+||-.+
T Consensus 364 vl~~l~~~d~~lf 376 (409)
T PF01603_consen 364 VLKILMEMDPKLF 376 (409)
T ss_dssp HHHHHHTTSHHHH
T ss_pred HHHHHHHhCHHHH
Confidence 9999988888654
|
The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=87.44 E-value=1.1e+02 Score=40.29 Aligned_cols=193 Identities=10% Similarity=-0.015 Sum_probs=103.9
Q ss_pred ChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc---C---CcchHHHHHHHHHHHHHHhcCCCccccccc
Q 000194 1584 RISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL---G---EDLKRKEAFARLQTLAMELSSCPVIQSAAS 1657 (1880)
Q Consensus 1584 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~---g---~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~ 1657 (1880)
.+..|...+.++...+|. .+......+.+.+.. | ...+..+|+..+++.+.- . +
T Consensus 276 ~~~~A~~~~~~Al~ldP~----------~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l-d--P------- 335 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN----------SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL-D--H------- 335 (553)
T ss_pred HHHHHHHHHHHHHhcCCc----------cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc-C--C-------
Confidence 466788888888877653 233222223222211 1 111346788877775532 1 0
Q ss_pred cccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCc
Q 000194 1658 TSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSV 1737 (1880)
Q Consensus 1658 ~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~ 1737 (1880)
..+.++..+|.-.... ...++....|++|++++|+...+|+..|......
T Consensus 336 ------------~~~~a~~~lg~~~~~~------g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~------------ 385 (553)
T PRK12370 336 ------------NNPQALGLLGLINTIH------SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMA------------ 385 (553)
T ss_pred ------------CCHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC------------
Confidence 1233444555544332 3468899999999999999999999888765431
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh-hhH-HHHHHHHHHhccCC
Q 000194 1738 APQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI-NTW-LVVLPQIIARIHSN 1815 (1880)
Q Consensus 1738 ~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~-~~w-l~~ipQLiaRi~~~ 1815 (1880)
.....|+..|-+++.+++ .+..-... ++.+.+..|..++....+++.+...|+ ... +..+-.+..+.+..
T Consensus 386 --G~~~eAi~~~~~Al~l~P-----~~~~~~~~-~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~ 457 (553)
T PRK12370 386 --GQLEEALQTINECLKLDP-----TRAAAGIT-KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKH 457 (553)
T ss_pred --CCHHHHHHHHHHHHhcCC-----CChhhHHH-HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCH
Confidence 123468888888888753 22211112 233455567666666666665544332 111 22333334444443
Q ss_pred ChhHHHHHHHHHHHHHhhCchhhH
Q 000194 1816 NRAVRELIQSLLVRIGQSHPQALM 1839 (1880)
Q Consensus 1816 ~~~v~~~l~~lL~~i~~~hPqa~l 1839 (1880)
++ -...+.++....|.+..
T Consensus 458 ~e-----A~~~~~~~~~~~~~~~~ 476 (553)
T PRK12370 458 EL-----ARKLTKEISTQEITGLI 476 (553)
T ss_pred HH-----HHHHHHHhhhccchhHH
Confidence 32 11123445566666443
|
|
| >PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=87.31 E-value=0.97 Score=42.37 Aligned_cols=56 Identities=21% Similarity=0.172 Sum_probs=43.9
Q ss_pred chhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 000194 167 EYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLR 223 (1880)
Q Consensus 167 ~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1880)
..+||+|++.|+++....|..+-+++++++..+-...+| ...|+..+-++++.+-+
T Consensus 3 ~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkr 58 (90)
T PF11919_consen 3 LRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKR 58 (90)
T ss_dssp -HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999998888888 45688888888887644
|
This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5. |
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=87.12 E-value=5.7 Score=42.19 Aligned_cols=94 Identities=17% Similarity=0.240 Sum_probs=68.5
Q ss_pred cchhchHHHHHHHHHHhc-CCc-----------------hhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhc
Q 000194 187 VFNVHVAEFVDAIWVALR-DPT-----------------LAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGL 248 (1880)
Q Consensus 187 ~l~~~l~~i~~~i~~~l~-D~~-----------------~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l 248 (1880)
.+.|+++.++|.++.... +++ -.+|.+|.+++..+++....+- ....+++.+..||
T Consensus 2 li~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~------~~~~~~~~v~~GL 75 (169)
T PF08623_consen 2 LIRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRI------DISEFLDRVEAGL 75 (169)
T ss_dssp GTTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-------HHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhC------CHHHHHHHHHhhc
Confidence 467889999999987664 332 4789999999999887432221 2566788999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHH
Q 000194 249 GRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLR 288 (1880)
Q Consensus 249 ~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~ 288 (1880)
++. .+++.-+..++.-++...++.+.++++.+++.+-.
T Consensus 76 ~D~--~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~ 113 (169)
T PF08623_consen 76 KDE--HDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRK 113 (169)
T ss_dssp SS---HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHH
T ss_pred CCc--HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 983 68888888899999888887777777776664443
|
; PDB: 4A0C_A 1U6G_C. |
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=86.93 E-value=14 Score=45.89 Aligned_cols=139 Identities=19% Similarity=0.264 Sum_probs=89.1
Q ss_pred CChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCC---CChhHHHHHHHHHHHHHHhcCCchhhhHHhH
Q 000194 654 ADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGIN---ANNGIISGVLVTVGDLARVGGFGMRQYISEL 730 (1880)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~---~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l 730 (1880)
.+...|.+|+..| ....+ +..+++.++..+.+....+ .+-.+..+++..+-.|...-.-.+.||+.++
T Consensus 219 ~~~~~r~eAL~sL---~TDsG------L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L 289 (576)
T KOG2549|consen 219 SDEPLRQEALQSL---ETDSG------LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQL 289 (576)
T ss_pred CCHHHHHHHHHhh---ccCcc------HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHH
Confidence 4566677776654 22222 2333344444444331111 1222333334444444444445789999999
Q ss_pred HHHHHHHHhc---------CCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Q 000194 731 MPLIVEALLD---------GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGE-LVWSTRREVLKVLGI 800 (1880)
Q Consensus 731 ~p~l~~~l~d---------~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~-~~~~vr~~~l~~lg~ 800 (1880)
+|.++.++-. .+.+..|+-|...++.++...+...+ ...|.+...+.+.+.+. .+.....-++..|..
T Consensus 290 ~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~--~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~ 367 (576)
T KOG2549|consen 290 VPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYN--NLQPRITRTLSKALLDNKKPLSTHYGAIAGLSE 367 (576)
T ss_pred hhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Confidence 9999998731 23467899999999999998886532 24578899999888655 578899999999988
Q ss_pred Hcc
Q 000194 801 MGA 803 (1880)
Q Consensus 801 lga 803 (1880)
+|.
T Consensus 368 lg~ 370 (576)
T KOG2549|consen 368 LGH 370 (576)
T ss_pred hhh
Confidence 885
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.80 E-value=1.3e+02 Score=40.43 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHH-----HHHHHHHHhccC
Q 000194 1744 HAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWL-----VVLPQIIARIHS 1814 (1880)
Q Consensus 1744 ~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl-----~~ipQLiaRi~~ 1814 (1880)
.||+.|=++++- ...++..+-+.+|--.|++-|...+..+.......-.|....+ .|+-|+...+-.
T Consensus 698 ~AIqmYe~~lkk----f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr 769 (1018)
T KOG2002|consen 698 LAIQMYENCLKK----FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILR 769 (1018)
T ss_pred HHHHHHHHHHHH----hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHh
Confidence 677777777653 2345678889999999999998777666666666666655554 477777776643
|
|
| >COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.75 E-value=34 Score=42.78 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC---------CCCcchHHHHHHHH
Q 000194 278 RYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI---------PAERDSGFIALGEM 348 (1880)
Q Consensus 278 ~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~---------~~~r~~a~~alg~l 348 (1880)
.+..++..++.+.......|+..+|+..=.++.-++-+|+..-..+.=|++..++++ +..+..-++|.|.+
T Consensus 567 FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~v 646 (1053)
T COG5101 567 FLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMV 646 (1053)
T ss_pred HHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhHH
Confidence 345567777777777888999999999999998888888754433433444444432 12356788999999
Q ss_pred Hhhchh
Q 000194 349 AGALDG 354 (1880)
Q Consensus 349 a~~v~~ 354 (1880)
...+++
T Consensus 647 Ise~p~ 652 (1053)
T COG5101 647 ISEVPK 652 (1053)
T ss_pred Hhccch
Confidence 888876
|
|
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=86.60 E-value=9 Score=45.27 Aligned_cols=142 Identities=13% Similarity=0.171 Sum_probs=90.1
Q ss_pred hhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccc---------cHHHHHHHHHHHHHHhcC---CCChHhHHHHHHHH
Q 000194 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV---------LPALRRHLIQLLTYLEQS---SADNKCREESAKLL 666 (1880)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v---------~p~l~~~l~~~l~~l~~~---~~~~~~r~~a~~~L 666 (1880)
-+++.++..+.|.+.++|..++.++..+....|... ...+...+...+..+-.. +++...-..+..++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 467888888889999999999999999988777654 233444444444332111 02223334455556
Q ss_pred HHHHHhC-cccccCchH----HHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcC
Q 000194 667 GCLIRNC-ERLIRPYIA----PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDG 741 (1880)
Q Consensus 667 ~~l~~~~-~~~~~py~~----~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~ 741 (1880)
-.++... .+.-.++.. .+.+.+++.+..... -..+.++...+..+..+....|.....|+..++|.+.+.+++.
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~-~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESS-FSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccc-cCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 6665432 111122222 222335555443210 0247788888899999999999999999999999999988865
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=86.58 E-value=21 Score=43.80 Aligned_cols=132 Identities=14% Similarity=0.131 Sum_probs=73.4
Q ss_pred HHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc--CCCcchhHHHHHHHHHHHHhhcCc-----
Q 000194 114 YMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR--GDRVEYRRFAAVLILKEMAENAST----- 186 (1880)
Q Consensus 114 ~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~--~~~~~~~R~aA~~~l~~la~~~p~----- 186 (1880)
|+++=+++++-...++.|+.-+-.|++.-+......+-..+...+.-.. ...+|..+.+|+.+++.++....+
T Consensus 214 YIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gv 293 (370)
T PF08506_consen 214 YIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGV 293 (370)
T ss_dssp HHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-
T ss_pred HHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCc
Confidence 6666555432245667777777777765222222222223333332211 356788999999999999865321
Q ss_pred -cchh--chHHHHH-HHHHHhc---CCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCC
Q 000194 187 -VFNV--HVAEFVD-AIWVALR---DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNA 252 (1880)
Q Consensus 187 -~l~~--~l~~i~~-~i~~~l~---D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~ 252 (1880)
...+ .+.+++. .|..-|. +.+|.+|-.|++.+..+-.. ...+.+..+++.+...|.+++
T Consensus 294 t~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~-------l~~~~l~~~~~~l~~~L~~~~ 359 (370)
T PF08506_consen 294 TQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQ-------LPKEQLLQIFPLLVNHLQSSS 359 (370)
T ss_dssp S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGG-------S-HHHHHHHHHHHHHHTTSS-
T ss_pred ccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhh-------CCHHHHHHHHHHHHHHhCCCC
Confidence 1111 3445443 3555555 56788888888876655332 334567789999999999875
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=86.50 E-value=13 Score=44.17 Aligned_cols=117 Identities=21% Similarity=0.237 Sum_probs=83.5
Q ss_pred cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000194 1566 TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1880)
Q Consensus 1566 ~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~ 1645 (1880)
..+...|..++.+..+.|+...|.+.+.+++..+|. ++.+....+-.+...| +..++...++.+...
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~----------~~~~~~~l~~~li~~~---~~~~~~~~l~~~~~~ 209 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD----------DPDARNALAWLLIDMG---DYDEAREALKRLLKA 209 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-----------HHHHHHHHHHHCTTC---HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHH
Confidence 356889999999999999999999999999987663 4666666766676666 456666666665544
Q ss_pred hcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1646 LSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1646 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
...++ .--..+|.++..+|+ .++.+..|.++.+.+|+....+..+|.+..
T Consensus 210 ~~~~~---------------~~~~~la~~~~~lg~-------------~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~ 259 (280)
T PF13429_consen 210 APDDP---------------DLWDALAAAYLQLGR-------------YEEALEYLEKALKLNPDDPLWLLAYADALE 259 (280)
T ss_dssp -HTSC---------------CHCHHHHHHHHHHT--------------HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT
T ss_pred CcCHH---------------HHHHHHHHHhccccc-------------cccccccccccccccccccccccccccccc
Confidence 32211 112346888887776 467889999999999999999888886644
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.38 E-value=38 Score=42.17 Aligned_cols=107 Identities=17% Similarity=0.079 Sum_probs=77.2
Q ss_pred chHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 000194 680 YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQ 759 (1880)
Q Consensus 680 y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~ 759 (1880)
++.+++..++..+..+ +..|+-..+.-+..+..+.++--......++..+.+.+-|. ...+|..|+.+|+.+.+
T Consensus 88 ~V~~~~~h~lRg~esk-----dk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 88 LVAGTFYHLLRGTESK-----DKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDR-EKAVRREAVKVLCYYQE 161 (885)
T ss_pred HHHHHHHHHHhcccCc-----chhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHh
Confidence 4566677777776653 77888888888888877777654555566666666666665 46799999999998876
Q ss_pred hcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000194 760 STGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVL 798 (1880)
Q Consensus 760 ~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~l 798 (1880)
-++.. - ..+...|..+++++++.+||+.|+--+
T Consensus 162 ~~~ne---e---n~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 162 MELNE---E---NRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred ccCCh---H---HHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 66542 1 246677778888999999999886543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=85.70 E-value=11 Score=50.30 Aligned_cols=157 Identities=10% Similarity=0.090 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhCCC---CCChHHHHHHHHHH-HHhhhCCCCCCCCHHHHHHHHHhccchhhhhhhccchhcccccccC
Q 000194 1245 SQKHLVQSLEMAFSSP---NIPPEILATLLNLA-EFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRM 1320 (1880)
Q Consensus 1245 ~~~~l~~~l~~~l~~~---~~p~~i~q~ll~l~-efm~~~~~~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~ 1320 (1880)
...++.+..++++... ..|.+-+-.++.++ .||...+- +.+|+++..++|.|.-|+..+|....-.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~La~i~~~~g~~~ea~~~l~~~~~~~----- 116 (694)
T PRK15179 47 AGRELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELF-----QVLVARALEAAHRSDEGLAVWRGIHQRF----- 116 (694)
T ss_pred HHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHH-----HHHHHHHHHHcCCcHHHHHHHHHHHhhC-----
Confidence 3345555666666543 34444332233322 34433222 4689999999999999999999876532
Q ss_pred CCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc----hhh-hhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHh
Q 000194 1321 DANPVAVVEALIHINNQLHQHEAAVGILTYAQK----ELD-VQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATL 1395 (1880)
Q Consensus 1321 ~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~----~~~-~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~ 1395 (1880)
++.....-.+..+-.+++..|.+....+..-. +.. ....+....++|++++|.++|++.+.+.++. .+...
T Consensus 117 -Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~---~~~~~ 192 (694)
T PRK15179 117 -PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF---ENGYV 192 (694)
T ss_pred -CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc---HHHHH
Confidence 34455666788889999999999887764221 111 2234556799999999999999998743332 45678
Q ss_pred hHhHHHHHhhCHHHHHHHHh
Q 000194 1396 GRMRCLAALARWEELNNLCK 1415 (1880)
Q Consensus 1396 g~m~cl~~Lg~w~~l~~~~~ 1415 (1880)
++=.+|..+|+-+.-....+
T Consensus 193 ~~a~~l~~~G~~~~A~~~~~ 212 (694)
T PRK15179 193 GWAQSLTRRGALWRARDVLQ 212 (694)
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 99999999999765544433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=85.51 E-value=1.7e+02 Score=40.45 Aligned_cols=358 Identities=13% Similarity=0.034 Sum_probs=188.4
Q ss_pred HHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hh---hhhhcHHHH
Q 000194 1289 RLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-EL---DVQLKESWY 1364 (1880)
Q Consensus 1289 ~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~---~~~~~~~~~ 1364 (1880)
..++.+..+-+.+..|+-+++..+... ++.....-.|..++...|+++.+.-.++.... .. .....+..+
T Consensus 53 ~~lA~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l 126 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSLTLWQKALSLE------PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANLLALAYVY 126 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 567778888899999998888766432 33355666888999999999999988875422 11 122234467
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhH--HHHHHHHHHHcC-
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEM--APMAANAAWNMG- 1441 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~--~~~~a~aaw~l~- 1441 (1880)
...|+.++|+..|++.+...++. .+....+..++...|+.+.-....+..-. .++..... .+.....-+.+.
T Consensus 127 ~~~g~~~~Al~~l~~al~~~P~~---~~~~~~la~~l~~~~~~e~Al~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~ 201 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPRAPQT---QQYPTEYVQALRNNRLSAPALGAIDDANL--TPAEKRDLEADAAAELVRLSFMP 201 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhhccc
Confidence 89999999999999998765543 34455667788888888754444443221 22211110 111111111100
Q ss_pred ------ChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcC--hhhhHHHHHHH-HHHhHhhhhHH
Q 000194 1442 ------EWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK--VLESYERAYSN-MVRVQQLSELE 1512 (1880)
Q Consensus 1442 ------~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~--~~esy~ray~~-l~~lq~L~ELe 1512 (1880)
++...++. ...++.++...... ....|.+++-. +..+-...+.+
T Consensus 202 ~~~~~~r~~~ad~A---------------------------l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 202 TRSEKERYAIADRA---------------------------LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred ccChhHHHHHHHHH---------------------------HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 00000000 00111111110100 11123332211 11111112333
Q ss_pred HHHH-hhcCCCCCC-chhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhh-cCCcc---cHHHHHHHHHHHHhcCChh
Q 000194 1513 EVID-YCTLPVGNP-VAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALV-LPPTE---DVETWLKFASLCRKSGRIS 1586 (1880)
Q Consensus 1513 E~i~-~~~~~~~~~-~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~v-l~~~e---~~~~~lk~a~laRk~g~~~ 1586 (1880)
+++. |.+....++ .+.. ...|--.+.....+++.=...+. +++ .+|.. ....+.+++....+.|+++
T Consensus 255 eA~~~~~~ll~~~~~~P~~-----a~~~la~~yl~~g~~e~A~~~l~--~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPW-----AQRWVASAYLKLHQPEKAQSILT--ELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHHHHHHHhhccCCCCCHH-----HHHHHHHHHHhcCCcHHHHHHHH--HHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 3332 111111110 0111 12232222222333333333222 222 22222 1456777777789999999
Q ss_pred HHHHHHHHHhcCCCCCC-----cccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccc
Q 000194 1587 QARSTLVKLLQYDPETS-----HENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLT 1661 (1880)
Q Consensus 1587 ~a~~~L~~l~~~~~~~~-----~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~ 1661 (1880)
.|...+.++....|... +...+......+.+-.+.++-..|+ ..+|+..+++.+.....
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~---~~eA~~~l~~al~~~P~------------- 391 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND---LPQAEMRARELAYNAPG------------- 391 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-------------
Confidence 99999998876554210 0000000112355667778888885 68999999987653211
Q ss_pred cccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000194 1662 TATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1880)
Q Consensus 1662 ~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1880)
+ ...+..+|.-.... ..+++.++.|+++.+++|+....++..|...
T Consensus 392 -----n----~~l~~~lA~l~~~~------g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 392 -----N----QGLRIDYASVLQAR------GWPRAAENELKKAEVLEPRNINLEVEQAWTA 437 (765)
T ss_pred -----C----HHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 1 23344555544332 3478899999999999999999888888743
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=85.45 E-value=32 Score=42.27 Aligned_cols=201 Identities=12% Similarity=0.091 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHH--HHHHHHHHHHHHHHhhhch-h--h-HHHHHHHHH--
Q 000194 170 RFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVR--ERAVEALRACLRVIEKRET-R--W-RVQWYYRMF-- 241 (1880)
Q Consensus 170 R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR--~aA~~al~~~~~~i~~r~~-~--~-~~~~~~~~l-- 241 (1880)
|-+++..+.-.++.=.+.|.+|+++++..+|+.|..-....+ .-+..|++-+.. +..... . . ....+..++
T Consensus 113 K~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~-v~~~~~~~~lf~~~~~L~~Iie~ 191 (370)
T PF08506_consen 113 KAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSS-VAESPHHKNLFENKPHLQQIIEK 191 (370)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHH-HHTSHHHHTTT-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHH-HHcchhHHHHhCCHHHHHHHHHH
Confidence 444455555455544556789999999999998864333332 223344432222 221111 0 0 122333333
Q ss_pred ---HHHH------------------hhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHH-Hhh--cchhHH
Q 000194 242 ---EATQ------------------DGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLR-YLE--HRDRLV 297 (1880)
Q Consensus 242 ---~~~~------------------~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~-~~~--~~~~~V 297 (1880)
|.++ +.+...+....|.||+..+..|.+.-++.+.+-+...+..++. +.. ..+..-
T Consensus 192 VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~ 271 (370)
T PF08506_consen 192 VIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRS 271 (370)
T ss_dssp THHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHH
T ss_pred hccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHH
Confidence 3221 0122222234588998899988876555455554444444443 222 234556
Q ss_pred HHHHHHHhHhHhhhChh------------hHHHHHHHHHHHHHHHhhcC-CCCcchHHHHHHHHHhhchhhhhhhhhHHH
Q 000194 298 RLSITSLLPRIAHFLRD------------RFVTNYLKICMNHILTVLRI-PAERDSGFIALGEMAGALDGELFHYLPTIT 364 (1880)
Q Consensus 298 r~~~~~~i~~la~~~~~------------~f~~~yl~~~~~~Ll~~L~~-~~~r~~a~~alg~la~~v~~~~~p~l~~i~ 364 (1880)
+.+++.+++.+|.-... .+.+-|-..++|.|..-... +-.|+.|+..+..+....++ +.+..++
T Consensus 272 KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~---~~l~~~~ 348 (370)
T PF08506_consen 272 KDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPK---EQLLQIF 348 (370)
T ss_dssp HHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-H---HHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCH---HHHHHHH
Confidence 78899999999864421 12221224455555411100 11367788888887766665 4567788
Q ss_pred HHHHHhhcCC
Q 000194 365 SHLREAIAPR 374 (1880)
Q Consensus 365 ~~l~~~l~~~ 374 (1880)
+.+...|...
T Consensus 349 ~~l~~~L~~~ 358 (370)
T PF08506_consen 349 PLLVNHLQSS 358 (370)
T ss_dssp HHHHHHTTSS
T ss_pred HHHHHHhCCC
Confidence 8888888543
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=85.38 E-value=4.9 Score=40.35 Aligned_cols=85 Identities=18% Similarity=0.165 Sum_probs=59.2
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCC-CChHHHHhHHHHHHHHHHHcC
Q 000194 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTP-AEPAARLEMAPMAANAAWNMG 1441 (1880)
Q Consensus 1363 ~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~-~~~~~~~~~~~~~a~aaw~l~ 1441 (1880)
.|..+|+.++|...|++.+........-....+++=.+|..||+.+.-....++.... .+.+....+..+.+.+.+.+|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 4789999999999999998754333322456788889999999998766555432211 122334455667788999999
Q ss_pred ChhhHH
Q 000194 1442 EWDQMA 1447 (1880)
Q Consensus 1442 ~Wd~~~ 1447 (1880)
+++.--
T Consensus 90 r~~eAl 95 (120)
T PF12688_consen 90 RPKEAL 95 (120)
T ss_pred CHHHHH
Confidence 987743
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.16 E-value=1.2e+02 Score=38.34 Aligned_cols=120 Identities=17% Similarity=0.193 Sum_probs=79.4
Q ss_pred cCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000194 1563 LPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1880)
Q Consensus 1563 l~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~ 1642 (1880)
...+++.+....-+..|=..++++.+.+....++..+|- ++.+..-++-.+...|+.+ +-+..-.++
T Consensus 238 ~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpf----------h~~~~~~~ia~l~el~~~n---~Lf~lsh~L 304 (611)
T KOG1173|consen 238 IGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPF----------HLPCLPLHIACLYELGKSN---KLFLLSHKL 304 (611)
T ss_pred hhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC----------CcchHHHHHHHHHHhcccc---hHHHHHHHH
Confidence 334566778888888888999999999999988877652 3455555666888888643 233333344
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000194 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1880)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1880)
+..... +|--++-.|-+-... ...+++.++|.+|+.+++....||..+|...
T Consensus 305 V~~yP~----------------------~a~sW~aVg~YYl~i------~k~seARry~SKat~lD~~fgpaWl~fghsf 356 (611)
T KOG1173|consen 305 VDLYPS----------------------KALSWFAVGCYYLMI------GKYSEARRYFSKATTLDPTFGPAWLAFGHSF 356 (611)
T ss_pred HHhCCC----------------------CCcchhhHHHHHHHh------cCcHHHHHHHHHHhhcCccccHHHHHHhHHh
Confidence 433211 011122233333322 2357899999999999999999999998764
Q ss_pred H
Q 000194 1723 T 1723 (1880)
Q Consensus 1723 ~ 1723 (1880)
.
T Consensus 357 a 357 (611)
T KOG1173|consen 357 A 357 (611)
T ss_pred h
Confidence 3
|
|
| >KOG1851 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.92 E-value=29 Score=48.37 Aligned_cols=140 Identities=12% Similarity=0.093 Sum_probs=88.3
Q ss_pred hcCCCcchhHHHHHHHHHHHHhh--cCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHH
Q 000194 161 LRGDRVEYRRFAAVLILKEMAEN--ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYY 238 (1880)
Q Consensus 161 l~~~~~~~~R~aA~~~l~~la~~--~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~ 238 (1880)
...+..|..|.+++.+++...-+ .+ ........|...+...+.|.+..||+.|+.+|.-++.--.-... .
T Consensus 1535 ~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~-------~ 1606 (1710)
T KOG1851|consen 1535 TADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQFV-------S 1606 (1710)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccccc-------h
Confidence 34677889999999999887654 33 45678889999999999999999999999998876542110000 1
Q ss_pred HHHHHHHhhccCC-CChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHh
Q 000194 239 RMFEATQDGLGRN-APVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIA 309 (1880)
Q Consensus 239 ~~l~~~~~~l~~~-~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la 309 (1880)
..-.....+.... .+....|||.+.+++++-..+=.+...+.+.+..+-+..++ +..+++++-.++...-
T Consensus 1607 ~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e-~~~i~~tvkktvseFr 1677 (1710)
T KOG1851|consen 1607 DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARE-SAAIKQTVKKTVSEFR 1677 (1710)
T ss_pred HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCC-chHHHHHHHHHHHHHH
Confidence 1111111222221 23567899999999998754433333444444444433333 3667777776665443
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=84.83 E-value=22 Score=47.05 Aligned_cols=174 Identities=14% Similarity=0.095 Sum_probs=89.6
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchh--
Q 000194 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR-- 231 (1880)
Q Consensus 154 ~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~-- 231 (1880)
+..+.+|+...+-.. .. |..++..+....+.-=...+..+++.+-..-.-+++.+|..|.-+++............
T Consensus 359 ~~~i~~~i~~~~~~~-~e-a~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~ 436 (574)
T smart00638 359 LKFIKQWIKNKKITP-LE-AAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP 436 (574)
T ss_pred HHHHHHHHHcCCCCH-HH-HHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 666777776543322 22 33344444444322112344444443332223346789999999998776544322211
Q ss_pred --hHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHh
Q 000194 232 --WRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIA 309 (1880)
Q Consensus 232 --~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la 309 (1880)
...++.+.+...+..+.... +.+.+...+.+||-+-. .-..+.+..++ ......+..+|.+++.++..++
T Consensus 437 ~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~LkaLGN~g~---~~~i~~l~~~l----~~~~~~~~~iR~~Av~Alr~~a 508 (574)
T smart00638 437 DFVLEELLKYLHELLQQAVSKG-DEEEIQLYLKALGNAGH---PSSIKVLEPYL----EGAEPLSTFIRLAAILALRNLA 508 (574)
T ss_pred hhhHHHHHHHHHHHHHHHHhcC-CchheeeHHHhhhccCC---hhHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHHH
Confidence 12345555555555555444 34557777777774321 11112222221 1123346789999999999988
Q ss_pred hhChhhHHHHHHHHHHHHHHHhhcCC----CCcchHHHHH
Q 000194 310 HFLRDRFVTNYLKICMNHILTVLRIP----AERDSGFIAL 345 (1880)
Q Consensus 310 ~~~~~~f~~~yl~~~~~~Ll~~L~~~----~~r~~a~~al 345 (1880)
...+.. +.+.++.+..+. ..|.+|+..|
T Consensus 509 ~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 509 KRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 766653 233344444432 2477776643
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=84.73 E-value=11 Score=46.39 Aligned_cols=109 Identities=19% Similarity=0.171 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
.+..+++.+ ..++++.|...+.++...+ |.+.+-.||++-..++ ..+|++.+++.+.+..
T Consensus 172 v~~Ll~~l~---~t~~~~~ai~lle~L~~~~-------------pev~~~LA~v~l~~~~---E~~AI~ll~~aL~~~p- 231 (395)
T PF09295_consen 172 VDTLLKYLS---LTQRYDEAIELLEKLRERD-------------PEVAVLLARVYLLMNE---EVEAIRLLNEALKENP- 231 (395)
T ss_pred HHHHHHHHh---hcccHHHHHHHHHHHHhcC-------------CcHHHHHHHHHHhcCc---HHHHHHHHHHHHHhCC-
Confidence 455555554 4678999999999887543 5566677888776664 5799999998775321
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1880)
.+ +..+...++++... ...+.+++..++|++..|...++|+.+|..+-.
T Consensus 232 -----------------~d----~~LL~~Qa~fLl~k------~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~ 280 (395)
T PF09295_consen 232 -----------------QD----SELLNLQAEFLLSK------KKYELALEIAKKAVELSPSEFETWYQLAECYIQ 280 (395)
T ss_pred -----------------CC----HHHHHHHHHHHHhc------CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 11 44455566666543 345788999999999999999999999988654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.73 E-value=24 Score=44.74 Aligned_cols=106 Identities=22% Similarity=0.285 Sum_probs=77.7
Q ss_pred HhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000194 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY 586 (1880)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1880)
+..++.++-+.||..|..-.|+.+...++.++ ...+.+++.++..-...|...+||.++++.|+
T Consensus 225 l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP----------------~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~ 288 (1005)
T KOG1949|consen 225 LYSLLEDPYPMVRSTAILGVCKITSKFWEMIP----------------PTILIDLLKKITDELAFDTSSDVRCSVFKGLP 288 (1005)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC----------------HHHHHHHHHHHHHHhhhccchheehhHhcCcH
Confidence 34678899999999999999998876664331 34567777777777778899999999999885
Q ss_pred CCCCcchhhcc---HhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCC
Q 000194 587 GNRGFDDFLAQ---ADCLSAIFAALNDEDFDVREYAISVAGRLSEKN 630 (1880)
Q Consensus 587 ~~~~fd~~L~~---~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~ 630 (1880)
. -.+.-++. ...++.+-.+++|.+..||-+++++|-++-..-
T Consensus 289 ~--~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vr 333 (1005)
T KOG1949|consen 289 M--ILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVR 333 (1005)
T ss_pred H--HHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhh
Confidence 2 10111111 124677778889999999999999998875543
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=84.51 E-value=82 Score=36.08 Aligned_cols=177 Identities=15% Similarity=0.193 Sum_probs=104.0
Q ss_pred HHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHH
Q 000194 606 AALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIH 685 (1880)
Q Consensus 606 ~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il 685 (1880)
...+..++++....++.|..++.+.- ...|.. .+.+..+... +....+..+.+++..+.+..+..+ |++.+++
T Consensus 8 ~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v----~~~L~~L~~~-~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L 80 (234)
T PF12530_consen 8 KLGKISDPELQLPLLEALPSLACHKN-VCVPPV----LQTLVSLVEQ-GSLELRYVALRLLTLLWKANDRHF-PFLQPLL 80 (234)
T ss_pred HhcCCCChHHHHHHHHHHHHHhccCc-cchhHH----HHHHHHHHcC-CchhHHHHHHHHHHHHHHhCchHH-HHHHHHH
Confidence 35567789999999999999998873 233333 3344444444 344445567788888887766554 6666655
Q ss_pred HHHHHHhccCCC-CCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcc
Q 000194 686 KALVARLLEGTG-INANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV 764 (1880)
Q Consensus 686 ~~ll~~l~~~~~-~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~ 764 (1880)
..+.-....... .+.......+...++-.++...++ +-.++++.+...+.+.++...+..|+.++..+++.. +
T Consensus 81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~--v 154 (234)
T PF12530_consen 81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE--V 154 (234)
T ss_pred HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh--h
Confidence 554333222111 112333333444566666665554 666788888888833335667888899999998543 3
Q ss_pred cccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000194 765 ITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1880)
Q Consensus 765 i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg 799 (1880)
++++ .....+..-+..+..+.+-......++
T Consensus 155 vd~~----s~w~vl~~~l~~~~rp~v~~~l~~l~~ 185 (234)
T PF12530_consen 155 VDFY----SAWKVLQKKLSLDYRPLVLKSLCSLFA 185 (234)
T ss_pred ccHH----HHHHHHHHhcCCccchHHHHHHHHHHH
Confidence 3433 345555555555544554444333333
|
|
| >KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.50 E-value=1e+02 Score=43.78 Aligned_cols=194 Identities=15% Similarity=0.163 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHcCCCC-chhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccc
Q 000194 22 SLDALNRILADLCTHGN-PKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVA 100 (1880)
Q Consensus 22 ~~~~~~~l~~~l~s~~~-~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~ 100 (1880)
-+..+..|++.|..|+. .+.+|-.||...+.+. ..+....+++.......+++.+.+.+.|......+..|+...
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~----~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~l 114 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTS----DTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKL 114 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccc----cchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 34568889999988875 6667988888888443 222222244555555568888999999999999999997653
Q ss_pred cCcchhHHHHHHHHHHhhccc------CCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc-----C------
Q 000194 101 LGENASKVSKFSNYMRTVFEV------KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-----G------ 163 (1880)
Q Consensus 101 ~~~~~~~~~~~~~~L~~~l~~------~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~-----~------ 163 (1880)
-.+.++||+.++|. +.+..|...|..++.-.-. .....+....+-+..+.+.. .
T Consensus 115 -------kk~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~--~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slS 185 (1312)
T KOG0803|consen 115 -------KKKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFA--EEKDRHVWFKCDPEIFYLVTEILVKETPDSLS 185 (1312)
T ss_pred -------HHHhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcC--hhhhHHHHHHhhHHHHHHHHHHHhccCccccc
Confidence 14678888888874 2345555555554432211 11222222222222222211 0
Q ss_pred C----Cc---c--hhH--HHHHHHHHHHHhh-cCc----cchhchHHHH--HHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 000194 164 D----RV---E--YRR--FAAVLILKEMAEN-AST----VFNVHVAEFV--DAIWVALRDPTLAVRERAVEALRACLRVI 225 (1880)
Q Consensus 164 ~----~~---~--~~R--~aA~~~l~~la~~-~p~----~l~~~l~~i~--~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1880)
+ .. + ..| ..++.++..+-.. .+. ...+-+..++ +.+|.-+.++.+.||.++.+.+-.+.+.+
T Consensus 186 d~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i 265 (1312)
T KOG0803|consen 186 DLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDI 265 (1312)
T ss_pred hhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhh
Confidence 0 00 0 122 3355555554422 221 1234455665 56999999999999999999988888777
Q ss_pred hhh
Q 000194 226 EKR 228 (1880)
Q Consensus 226 ~~r 228 (1880)
..+
T Consensus 266 ~~~ 268 (1312)
T KOG0803|consen 266 LNR 268 (1312)
T ss_pred HHh
Confidence 655
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.23 E-value=32 Score=43.11 Aligned_cols=189 Identities=18% Similarity=0.200 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcc
Q 000194 1551 VWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDL 1630 (1880)
Q Consensus 1551 ~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~ 1630 (1880)
.=+-+|..-..|....++++.|.++--.=-..++=+.|..+|.+.++++|+ .-.+.++.|-..=.+|.
T Consensus 301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~----------NleaLmaLAVSytNeg~-- 368 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT----------NLEALMALAVSYTNEGL-- 368 (579)
T ss_pred chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc----------cHHHHHHHHHHHhhhhh--
Confidence 445667777777766677888888888877888999999999999998874 24566666666656664
Q ss_pred hHHHHHHHHHHHHHHh-c-----CC-CccccccccccccccCcchhhHH---HHHHHHhhhHhh-cCC----CC-----C
Q 000194 1631 KRKEAFARLQTLAMEL-S-----SC-PVIQSAASTSLTTATSTNVPLIA---RVYLKLGSWKRA-LPP----GL-----D 1690 (1880)
Q Consensus 1631 ~~~~Al~~L~~~~~~~-~-----~~-~~~~~~~~~~~~~~~~~~~~l~a---~~~~~lg~w~~~-~~~----~~-----~ 1690 (1880)
..+|+..|.+-+..- . .. .+.......++ .+...++ +.|+-.+.=.-. ..+ ++ .
T Consensus 369 -q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~-----~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 369 -QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSF-----LDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred -HHHHHHHHHHHHHhCccchhccccCccccccCCcCC-----CCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 578999998865421 1 00 00000000011 1111122 222222221110 000 00 1
Q ss_pred CCCHHHHHHHHHHHHhhcccchHHHHHHHHH--H----HHHHHhhhcc--CCC------------CchhhHHHHHHHHHH
Q 000194 1691 DESIPEIIAAYRNATQCATKWGKAWHSWALF--N----TAVMSHYTLR--GLP------------SVAPQFVVHAVTGYF 1750 (1880)
Q Consensus 1691 ~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~--n----~~~~~~~~~~--~~~------------~~~~~~~~~ai~~y~ 1750 (1880)
...++..+.+|+.|+...|+.|..|-+++-. | .+.++.|.+- =+| .....+...|+++|+
T Consensus 443 s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 2346777788888888888888888877422 2 2334433210 001 122345678999999
Q ss_pred HHHhhcc
Q 000194 1751 HSIACAA 1757 (1880)
Q Consensus 1751 ~si~~~~ 1757 (1880)
.+|.+..
T Consensus 523 ~AL~mq~ 529 (579)
T KOG1125|consen 523 EALSMQR 529 (579)
T ss_pred HHHHhhh
Confidence 9998854
|
|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=84.16 E-value=1.2e+02 Score=37.61 Aligned_cols=183 Identities=13% Similarity=0.062 Sum_probs=100.6
Q ss_pred ChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcC-CCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHH
Q 000194 124 DREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRG-DRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVA 202 (1880)
Q Consensus 124 d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~-~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~ 202 (1880)
+-.+...+-+++..=--..+..+.+.++..+. ++.-+.+ =+.-+.=..++.+++.+....|..|..+...-+|.++..
T Consensus 105 ~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~-~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~ 183 (372)
T PF12231_consen 105 PKSICTHYLWCLSDQKFSPKIMTSDRVERLLA-ALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPD 183 (372)
T ss_pred CHHHHHHHHHHHHcCCCCCcccchhhHHHHHH-HHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666665542111122233444443332 2222222 223344566788889999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHhhhchh-------------hHHHHHHHHHHHHHhhccCCCChhHHHHHHH--HHHHH
Q 000194 203 LRDPTLAVRERAVEALRACLRVIEKRETR-------------WRVQWYYRMFEATQDGLGRNAPVHSIHGSLL--AVGEL 267 (1880)
Q Consensus 203 l~D~~~~VR~aA~~al~~~~~~i~~r~~~-------------~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~--~l~~l 267 (1880)
+-+....+|..|...+-.+...+.. +.. ....+...+.+.+..-+.+++. ..++--. ++--|
T Consensus 184 l~~~~k~ir~~a~~l~~~~~~~l~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~--~~~a~~iW~~~i~L 260 (372)
T PF12231_consen 184 LLSSAKDIRTKAISLLLEAKKCLGP-NKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDE--YKLAMQIWSVVILL 260 (372)
T ss_pred HhhcchHHHHHHHHHHHHHHHHhCh-hHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCC--cchHHHHHHHHHHH
Confidence 9999999999876655444332221 100 0001122222223332333111 1111111 12222
Q ss_pred HHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhh
Q 000194 268 LRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAH 310 (1880)
Q Consensus 268 l~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~ 310 (1880)
++...-.-.+++.+.+...-.++++.++.+|.++..++..+..
T Consensus 261 L~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 261 LGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred hCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2211112234666666666677899999999999999998876
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=84.00 E-value=20 Score=42.40 Aligned_cols=147 Identities=15% Similarity=0.222 Sum_probs=100.4
Q ss_pred CchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccc----h-h-chHHHHHHHHHHhc--------CCchhH
Q 000194 145 MTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVF----N-V-HVAEFVDAIWVALR--------DPTLAV 210 (1880)
Q Consensus 145 ~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l----~-~-~l~~i~~~i~~~l~--------D~~~~V 210 (1880)
...++.+..++.++..+ ++.....|.-|+.+|..+.+++|... . . ...-+.+++.+.+. |....+
T Consensus 112 ~i~~~~~liiP~iL~ll-DD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~L 190 (282)
T PF10521_consen 112 WISQHWPLIIPPILNLL-DDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLEL 190 (282)
T ss_pred hHHHhhhHHHhhHHHHh-cCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHH
Confidence 34556666777777766 44466788999999999999988643 2 2 34445577888887 777888
Q ss_pred HHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH-HHhhccCCCC---hhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHH
Q 000194 211 RERAVEALRACLRVIEKRETRWRVQWYYRMFEA-TQDGLGRNAP---VHSIHGSLLAVGELLRNTGEFMMSRYREVAEIV 286 (1880)
Q Consensus 211 R~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~-~~~~l~~~~~---~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~l 286 (1880)
=..|..|+..+...........+..++.+++.+ ++.++.-... .+.+...+..+..++...|.....|+.++...+
T Consensus 191 l~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l 270 (282)
T PF10521_consen 191 LQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVL 270 (282)
T ss_pred HHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888999988887765433333455556555544 6666543222 455667666788888877888888888888777
Q ss_pred HHHhhc
Q 000194 287 LRYLEH 292 (1880)
Q Consensus 287 l~~~~~ 292 (1880)
...+.+
T Consensus 271 ~~~l~n 276 (282)
T PF10521_consen 271 SQILEN 276 (282)
T ss_pred HHHhcC
Confidence 765544
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=83.92 E-value=76 Score=42.55 Aligned_cols=167 Identities=17% Similarity=0.171 Sum_probs=90.4
Q ss_pred CChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcch
Q 000194 514 EDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDD 593 (1880)
Q Consensus 514 ~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~ 593 (1880)
.++.+|.+|..+.+.++-....... .+. ............++..+. ..+..+....+.+-+...+.+|+ .
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~--~~~-~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~~LkaLg---N--- 516 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSD--SAE-FCDPCSRCIIEKYVPYLE-QELKEAVSRGDEEEKIVYLKALG---N--- 516 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT--------------SS--GGGTHHHH-HHHHHHHHTT-HHHHHHHHHHHH---H---
T ss_pred CChhHHHHHHHHHHHHhCceeeccc--ccc-cccccchhhHHHHHHHHH-HHHHHHhhccCHHHHHHHHHHhh---c---
Confidence 3578999999988888754321100 000 000001111222333333 34455667788888888899885 1
Q ss_pred hhccHhhHHHHHHHhCCC---CHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHH
Q 000194 594 FLAQADCLSAIFAALNDE---DFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLI 670 (1880)
Q Consensus 594 ~L~~~~~l~~L~~~l~D~---~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~ 670 (1880)
+..+..++.+...+.+. ...+|.+|+..+.+++..+|..+.+. +..++. +...+.+.|..|.. .|+
T Consensus 517 -~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~----l~~I~~---n~~e~~EvRiaA~~---~lm 585 (618)
T PF01347_consen 517 -LGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREI----LLPIFM---NTTEDPEVRIAAYL---ILM 585 (618)
T ss_dssp -HT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHH----HHHHHH----TTS-HHHHHHHHH---HHH
T ss_pred -cCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHH----HHHHhc---CCCCChhHHHHHHH---HHH
Confidence 22356777777777666 67899999999999998887655443 333333 22256777777654 344
Q ss_pred HhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHH
Q 000194 671 RNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVT 711 (1880)
Q Consensus 671 ~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~ 711 (1880)
+..|. ..++..+...+..+ .+..|...+...
T Consensus 586 ~~~P~------~~~l~~i~~~l~~E----~~~QV~sfv~S~ 616 (618)
T PF01347_consen 586 RCNPS------PSVLQRIAQSLWNE----PSNQVASFVYSH 616 (618)
T ss_dssp HT---------HHHHHHHHHHHTT-----S-HHHHHHHHHH
T ss_pred hcCCC------HHHHHHHHHHHhhC----chHHHHHHHHHh
Confidence 44332 45566666666643 367776655443
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] | Back alignment and domain information |
|---|
Probab=83.89 E-value=82 Score=38.26 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=52.2
Q ss_pred hHHHHHHHhCCCCH----hHHHHHHHHHHhhhcCCccccc------------------------HHHHHHHHHHHHHHhc
Q 000194 600 CLSAIFAALNDEDF----DVREYAISVAGRLSEKNPAYVL------------------------PALRRHLIQLLTYLEQ 651 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~----~VR~~a~~~l~~l~~~~p~~v~------------------------p~l~~~l~~~l~~l~~ 651 (1880)
.+..|......++. .++..+-+.|-.++......+. +.-.+.+..++..+..
T Consensus 205 ~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lkp 284 (330)
T PF11707_consen 205 TLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLKP 284 (330)
T ss_pred HHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCCcccccCCCCcCcCcccccccccccCCCCCcccHHHHHHHHHCCC
Confidence 45555554444444 8999999999988853211121 2224667777877766
Q ss_pred CCCChHhHHHHHHHHHHHHHhCcccccCchHHHH
Q 000194 652 SSADNKCREESAKLLGCLIRNCERLIRPYIAPIH 685 (1880)
Q Consensus 652 ~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il 685 (1880)
. ++..++ +++-.+.+++|+.+.||+...-
T Consensus 285 ~-e~~~q~----~Lvl~Il~~~PeLva~Y~~~~~ 313 (330)
T PF11707_consen 285 W-EDDRQQ----ELVLKILKACPELVAPYFNNLP 313 (330)
T ss_pred C-ccHHHH----HHHHHHHHHChHHHHHHHHhhh
Confidence 5 454433 4566788999999999987653
|
The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=83.89 E-value=1.3e+02 Score=37.79 Aligned_cols=130 Identities=11% Similarity=0.046 Sum_probs=87.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...+..++....+.|+.+.|.+.|.+.....+ +|.....++.+. .| +..+++..+++..+..
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-----------~~~l~~l~~~l~--~~---~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-----------DERLVLLIPRLK--TN---NPEQLEKVLRQQIKQH 324 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----------CHHHHHHHhhcc--CC---ChHHHHHHHHHHHhhC
Confidence 5578899999999999999999999998876322 355555555542 24 3567899888876542
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
..+ ..-.-..++.++..++| ++..++|+.+.+..|+. ..+..+|....+.
T Consensus 325 P~~---------------~~l~l~lgrl~~~~~~~-------------~~A~~~le~al~~~P~~-~~~~~La~~~~~~- 374 (398)
T PRK10747 325 GDT---------------PLLWSTLGQLLMKHGEW-------------QEASLAFRAALKQRPDA-YDYAWLADALDRL- 374 (398)
T ss_pred CCC---------------HHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHc-
Confidence 211 01122346666666666 56788999999999875 4566777665431
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhh
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIAC 1755 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~ 1755 (1880)
+ -...|..+|-+++.+
T Consensus 375 ------g-------~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 375 ------H-------KPEEAAAMRRDGLML 390 (398)
T ss_pred ------C-------CHHHHHHHHHHHHhh
Confidence 1 123678888888765
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.79 E-value=1.4e+02 Score=38.20 Aligned_cols=52 Identities=27% Similarity=0.354 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 000194 1548 NVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPE 1601 (1880)
Q Consensus 1548 ~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~ 1601 (1880)
..+..+-+| +.+|.+-...-..|+-+++.--+.|....|...|.++++++|.
T Consensus 565 t~Esl~All--qkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 565 TRESLEALL--QKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred cHHHHHHHH--HHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 334444443 3444443333467899999999999999999999888887764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.49 E-value=11 Score=45.63 Aligned_cols=86 Identities=23% Similarity=0.179 Sum_probs=64.0
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhh-----hhcHHHHH
Q 000194 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDV-----QLKESWYE 1365 (1880)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~-----~~~~~~~e 1365 (1880)
||++=.--++.+-||+|......= .|++...+..|.+.|.+|+.++.|.|..+.+-...+. -..+..||
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALEL------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhc------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 566666667788899998654321 2566788999999999999999999998865432222 22344699
Q ss_pred HhcCHHHHHHHHHHHHh
Q 000194 1366 KLQRWDDALKAYTNKAS 1382 (1880)
Q Consensus 1366 ~lg~W~~Al~~y~~~~~ 1382 (1880)
++++.++|-.+|++-++
T Consensus 478 ~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 99999999999987654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=83.44 E-value=17 Score=44.76 Aligned_cols=114 Identities=16% Similarity=0.080 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCC
Q 000194 1571 TWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCP 1650 (1880)
Q Consensus 1571 ~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~ 1650 (1880)
.+.+-+.-+.+.|++..|...+.++...+|. .+...+..+..+...|+ ..+|+..++..+.--.
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~----------~~~a~~~~a~~~~~~g~---~~eAl~~~~~Al~l~P--- 67 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPN----------NAELYADRAQANIKLGN---FTEAVADANKAIELDP--- 67 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCc---
Confidence 4667788999999999999999999887653 46777888888888884 6899999888764211
Q ss_pred ccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000194 1651 VIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV 1725 (1880)
Q Consensus 1651 ~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~ 1725 (1880)
..+.+|+.+|.-...+ ...++.+..|+.+++++|++..++...+.....+
T Consensus 68 -------------------~~~~a~~~lg~~~~~l------g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 68 -------------------SLAKAYLRKGTACMKL------EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred -------------------CCHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 1234455555544443 3467889999999999999887766665554544
|
|
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=83.44 E-value=30 Score=42.12 Aligned_cols=152 Identities=14% Similarity=0.106 Sum_probs=96.6
Q ss_pred HHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCch
Q 000194 602 SAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYI 681 (1880)
Q Consensus 602 ~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~ 681 (1880)
..+..++.+.+...|..|+..|..=.... .++|+|-+++.+.++.-.. .+...-...++++..|+.+..=.+.||+
T Consensus 181 ~~It~a~~~~~~~~r~~aL~sL~tD~gl~--~LlPyf~~fI~~~v~~n~~--~nl~~L~~lm~~v~ALl~N~~l~le~Yl 256 (343)
T cd08050 181 EEITEALVGSNEEKRREALQSLRTDPGLQ--QLLPYFVRFIAEGVTVNLD--QNLALLIYLMRMVRALLDNPNLHLEPYL 256 (343)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhccCCCch--hhhhHHHHHHHHHHHhhhc--ccHHHHHHHHHHHHHHhcCCCCchHHhH
Confidence 34444555567778888888765422222 3678887776655543211 0233334456667777777666788999
Q ss_pred HHHHHHHHHHhccCCC-----CCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchh-hHHHHHHHHH
Q 000194 682 APIHKALVARLLEGTG-----INANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVT-KREVAVSTLG 755 (1880)
Q Consensus 682 ~~il~~ll~~l~~~~~-----~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~-~r~~Al~~Lg 755 (1880)
..+++.++..+-.+.. .+....++..+...++.++...+.....-.+.++..+.+++.|..... ..=-|+.+|+
T Consensus 257 h~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~ 336 (343)
T cd08050 257 HQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLS 336 (343)
T ss_pred HHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHH
Confidence 9999888877643211 123567889999999999998887666666777878888888764322 2344555555
Q ss_pred HH
Q 000194 756 QV 757 (1880)
Q Consensus 756 ~l 757 (1880)
.+
T Consensus 337 ~l 338 (343)
T cd08050 337 AL 338 (343)
T ss_pred Hh
Confidence 43
|
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as |
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=83.30 E-value=15 Score=49.26 Aligned_cols=171 Identities=15% Similarity=0.181 Sum_probs=86.0
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhc----
Q 000194 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE---- 229 (1880)
Q Consensus 154 ~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~---- 229 (1880)
+..+.+|+....-... .|..++..+....+.--...+..+++.+-..-...++.+|.+|.-+++.+..-.....
T Consensus 397 v~~i~~~I~~~~~~~~--ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~ 474 (618)
T PF01347_consen 397 VKFIKDLIKSKKLTDD--EAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAE 474 (618)
T ss_dssp HHHHHHHHHTT-S-HH--HHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHcCCCCHH--HHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccc
Confidence 5566677764332222 2334455555443222233444444443322234567899999999988776554331
Q ss_pred ------hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhc---chhHHHHH
Q 000194 230 ------TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEH---RDRLVRLS 300 (1880)
Q Consensus 230 ------~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~---~~~~Vr~~ 300 (1880)
......+.+.+...+..+.... +.+.+..+|.+||-+-. +.....+..+... .+..+|.+
T Consensus 475 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~ 543 (618)
T PF01347_consen 475 FCDPCSRCIIEKYVPYLEQELKEAVSRG-DEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVA 543 (618)
T ss_dssp ------SS--GGGTHHHHHHHHHHHHTT--HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhcc-CHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHH
Confidence 1122233344444444334443 35668888888876531 1233334444433 36789999
Q ss_pred HHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC----CcchHHHHH
Q 000194 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA----ERDSGFIAL 345 (1880)
Q Consensus 301 ~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~----~r~~a~~al 345 (1880)
|+.++..++...+.. +.+.++.++.+.. .|.+|+..|
T Consensus 544 Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 544 AIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp HHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 999999887665543 3344445544432 477776543
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=83.24 E-value=11 Score=35.77 Aligned_cols=85 Identities=19% Similarity=0.191 Sum_probs=63.7
Q ss_pred HHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 000194 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF 721 (1880)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~ 721 (1880)
+.+.+..+.+ +.+-.|..++..|..+++... ......+.++..++..++++ ++-|--+++.++..|+...+.
T Consensus 5 ~~~al~~L~d--p~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~-----DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLND--PLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDE-----DSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccC--CCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCC-----CchHHHHHHHHHHHHHHHChH
Confidence 3344555544 466789999999999998766 33445788999999999986 778888999999999876543
Q ss_pred chhhhHHhHHHHHHHHHhcC
Q 000194 722 GMRQYISELMPLIVEALLDG 741 (1880)
Q Consensus 722 ~~~~~~~~l~p~l~~~l~d~ 741 (1880)
.++|.+++...|.
T Consensus 77 -------~vl~~L~~~y~~~ 89 (92)
T PF10363_consen 77 -------EVLPILLDEYADP 89 (92)
T ss_pred -------HHHHHHHHHHhCc
Confidence 5677777776654
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.21 E-value=75 Score=36.05 Aligned_cols=98 Identities=19% Similarity=0.262 Sum_probs=69.5
Q ss_pred HhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccc
Q 000194 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLI 677 (1880)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~ 677 (1880)
.+-+..+...+.|++.-.|..+..++|+|-.-. -.|.+.+.|. +..+.+.+|.+|+.+||.++.
T Consensus 186 EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~---ai~~L~k~L~-------d~~E~pMVRhEaAeALGaIa~------ 249 (289)
T KOG0567|consen 186 EEAINALIDGLADDSALFRHEVAFVFGQLQSPA---AIPSLIKVLL-------DETEHPMVRHEAAEALGAIAD------ 249 (289)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhccchh---hhHHHHHHHH-------hhhcchHHHHHHHHHHHhhcC------
Confidence 356788888999999999999999999986533 3577766543 222567899999999999975
Q ss_pred cCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcC
Q 000194 678 RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720 (1880)
Q Consensus 678 ~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g 720 (1880)
+..+++|...+.|+ .+-|+.....+++.+-...|
T Consensus 250 ----e~~~~vL~e~~~D~-----~~vv~esc~valdm~eyens 283 (289)
T KOG0567|consen 250 ----EDCVEVLKEYLGDE-----ERVVRESCEVALDMLEYENS 283 (289)
T ss_pred ----HHHHHHHHHHcCCc-----HHHHHHHHHHHHHHHHHhcc
Confidence 34466677777764 55566666666665443333
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=82.86 E-value=5.5 Score=35.36 Aligned_cols=66 Identities=20% Similarity=0.354 Sum_probs=56.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~ 1644 (1880)
|+...|...+....+.|+++.|...+.++..++|. .+.+.+-.+...|.+|+ +..+|+..+++.++
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~----------~~~~~~~~g~~~~~~~~--~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN----------NAEAYYNLGLAYMKLGK--DYEEAIEDFEKALK 66 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT----------HHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHhCc--cHHHHHHHHHHHHH
Confidence 45789999999999999999999999999988763 47888999999999984 25789998887653
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=82.62 E-value=7.1 Score=34.60 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
..++.+..|++|++++|+...+|...|..+.+.- +-...|++.|-++|.+.
T Consensus 18 ~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~-------------~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 18 DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG-------------KDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT-------------THHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-------------ccHHHHHHHHHHHHHcC
Confidence 3578899999999999999999999998866521 13447888888888763
|
... |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=82.61 E-value=86 Score=43.96 Aligned_cols=164 Identities=12% Similarity=-0.007 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCC
Q 000194 1570 ETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSC 1649 (1880)
Q Consensus 1570 ~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~ 1649 (1880)
..|+..+.++.+.|+++.|...+.++...+|. .+......+..+-..|+ ..+|+..+++.+..-
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~----------~~~l~~~La~~l~~~Gr---~~eAl~~~~~AL~l~--- 606 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRGLG----------DNALYWWLHAQRYIPGQ---PELALNDLTRSLNIA--- 606 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc----------cHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhC---
Confidence 45777888888899999988888887765432 12222222222223463 578888887765321
Q ss_pred CccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhh
Q 000194 1650 PVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHY 1729 (1880)
Q Consensus 1650 ~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~ 1729 (1880)
+. +..+..+|.-..+. ...++....|.++++++|+...+|..+|.+..+.
T Consensus 607 ------------------P~--~~a~~~LA~~l~~l------G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~---- 656 (987)
T PRK09782 607 ------------------PS--ANAYVARATIYRQR------HNVPAAVSDLRAALELEPNNSNYQAALGYALWDS---- 656 (987)
T ss_pred ------------------CC--HHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----
Confidence 01 23445555544443 3467888888888888888888888888664431
Q ss_pred hccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccC
Q 000194 1730 TLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAH 1795 (1880)
Q Consensus 1730 ~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ 1795 (1880)
.....|+..|-+++... + ...+....+=.+++..|+.++....+++.+.-
T Consensus 657 ----------G~~eeAi~~l~~AL~l~-----P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 657 ----------GDIAQSREMLERAHKGL-----P-DDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred ----------CCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 12356777788877764 2 23445566667777777777666666666543
|
|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=82.16 E-value=18 Score=46.56 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=95.6
Q ss_pred CChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCC--CHhHHHHHHHHH---HhhhcCCcccccHHHHHHHHHHHH
Q 000194 573 ADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDE--DFDVREYAISVA---GRLSEKNPAYVLPALRRHLIQLLT 647 (1880)
Q Consensus 573 ~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~--~~~VR~~a~~~l---~~l~~~~p~~v~p~l~~~l~~~l~ 647 (1880)
.++.+|..++.-|.. +-...-..+.+++.++.++..+ +..+|..++..+ .....+.+..+...++..+..-+.
T Consensus 295 a~~~lq~kIL~~L~k--S~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~ 372 (501)
T PF13001_consen 295 ASPRLQEKILSLLSK--SVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGW 372 (501)
T ss_pred CCHHHHHHHHHHHHH--hHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCc
Confidence 467788888888852 1111111256788999999887 678899999998 777777665555555555433222
Q ss_pred -HHh------cCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcC
Q 000194 648 -YLE------QSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720 (1880)
Q Consensus 648 -~l~------~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g 720 (1880)
.+. .+..+...|..+-++||.|++..+..+..= -.++.-|...+.++ .++++.++-.|++.|+....
T Consensus 373 p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~-----~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 373 PLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEFLFDSLEDE-----SPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred cccccccccCCCcccHHHHHHHHHHHHHHHccCccccccc-HHHHHHHHHHhhCc-----chHHHHHHHHHHHHHHHHHh
Confidence 221 111456778889999999999999887433 34556666666543 78899998999999887654
Q ss_pred C
Q 000194 721 F 721 (1880)
Q Consensus 721 ~ 721 (1880)
.
T Consensus 447 ~ 447 (501)
T PF13001_consen 447 D 447 (501)
T ss_pred c
Confidence 3
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=81.95 E-value=29 Score=35.59 Aligned_cols=108 Identities=19% Similarity=0.101 Sum_probs=73.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++.......+..+.+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+...
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY----------NSRYWLGLAACCQMLKE---YEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC
Confidence 44677788899999999999999999888766542 46777778888877774 578888887755321
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAW 1715 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w 1715 (1880)
.. .......++.+|...|+ .+..+..|+.+.+++|+..+.+
T Consensus 82 p~---------------~~~~~~~la~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 82 PD---------------DPRPYFHAAECLLALGE-------------PESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CC---------------ChHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhccccchHH
Confidence 10 01112234555555544 4677889999999998775533
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=81.86 E-value=3.7 Score=32.76 Aligned_cols=41 Identities=24% Similarity=0.217 Sum_probs=33.4
Q ss_pred HHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHH
Q 000194 1674 VYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWAL 1720 (1880)
Q Consensus 1674 ~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~ 1720 (1880)
.++.+|.+..+. ..+++..+.|+++++.+|++..+|+.+|.
T Consensus 3 ~~~~la~~~~~~------G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRL------GQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHc------CCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 355666666654 35789999999999999999999999884
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=81.80 E-value=3.1 Score=36.85 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=39.6
Q ss_pred HhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhh
Q 000194 1366 KLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEY 1417 (1880)
Q Consensus 1366 ~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~ 1417 (1880)
+.|+|++|+..|++.+...++. .+...++.+|+.+.|+++.-.......
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDN---PEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5789999999999998765543 467789999999999999887777654
|
... |
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.44 E-value=1.6e+02 Score=37.12 Aligned_cols=109 Identities=20% Similarity=0.168 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccccc-
Q 000194 557 LIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVL- 635 (1880)
Q Consensus 557 ~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~- 635 (1880)
+...+++.|+.-++...+|.+|...++.|+-+--+|.-|+- ++...+..|.+..+.+....|++.+-.+...++..-.
T Consensus 526 l~~~~~~tlI~Pavrn~a~~IrE~gve~L~l~clldv~La~-~n~~i~~~cv~KGn~~lk~~A~q~~vDl~~~hg~~g~~ 604 (885)
T COG5218 526 LHEAIVETLILPAVRNSAPNIRETGVEILELGCLLDVALAR-PNHAIIQSCVHKGNMELKSMAFQMCVDLVLSHGDEGEG 604 (885)
T ss_pred HHHHHHHHHhhhhhccCCCchhhhhhhhhhhhhhhhHhhcC-CchHHHHHHHhccchhHHHHHHHHHHHHHHHhcccccc
Confidence 46677788888889999999999999998643333444443 3567777888888888888999988887766653221
Q ss_pred ---HHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHH
Q 000194 636 ---PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLI 670 (1880)
Q Consensus 636 ---p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~ 670 (1880)
..+.+++...+..+ +.++.+..++..|+.++
T Consensus 605 k~ds~l~~Il~~~l~~~----e~~E~q~i~aegl~Kl~ 638 (885)
T COG5218 605 KLDSLLGDILRHILQGL----ETKERQDIIAEGLSKLA 638 (885)
T ss_pred hHHHHHHHHHHHHHhcc----CchhHHHHhhhHHHHHH
Confidence 12344443333332 33444455666666554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=81.21 E-value=2.3e+02 Score=38.94 Aligned_cols=124 Identities=10% Similarity=-0.050 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC-CC----cccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPE-TS----HENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~-~~----~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~ 1643 (1880)
...-.++.-..-.++++..|...+.++....|- .. +...+..+-.....-.+.++=..|+ -.+|.+.++++.
T Consensus 367 ~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd---l~~Ae~~le~l~ 443 (822)
T PRK14574 367 LLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND---LPTAQKKLEDLS 443 (822)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 333467888888999999999999998764331 10 0000000112333334554445564 578999999886
Q ss_pred HHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1644 MELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1644 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
..-..+ ..-.-.+|.++ .|+ ..+.+..+.|+.+..++|....+-+.-|....
T Consensus 444 ~~aP~n---------------~~l~~~~A~v~----~~R---------g~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al 495 (822)
T PRK14574 444 STAPAN---------------QNLRIALASIY----LAR---------DLPRKAEQELKAVESLAPRSLILERAQAETAM 495 (822)
T ss_pred HhCCCC---------------HHHHHHHHHHH----Hhc---------CCHHHHHHHHHHHhhhCCccHHHHHHHHHHHH
Confidence 542211 01111223332 222 35788888898888888887666655554433
|
|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.91 E-value=4.5 Score=50.55 Aligned_cols=129 Identities=17% Similarity=0.102 Sum_probs=88.6
Q ss_pred hhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcccccccch
Q 000194 986 PVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGH 1065 (1880)
Q Consensus 986 ~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~~~~~~~ 1065 (1880)
..+-|.+-+...+..+..+......+--++..+-..-..|...-+|.++..+++.+.+.+|..|+-.+|+++-+ |...
T Consensus 891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vc--fN~~ 968 (1128)
T COG5098 891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVC--FNTT 968 (1128)
T ss_pred hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeecccccee--hhhh
Confidence 34444555555543333344333322223333222223455555788888888777788999999999999866 4478
Q ss_pred hHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHh
Q 000194 1066 ISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLK 1116 (1880)
Q Consensus 1066 ~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~fip~i~~~l~~ 1116 (1880)
+.+..+-|.|-|.+.+.++|+.++-++..|+..-.-...-+++.+...+..
T Consensus 969 ~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVKGqlg~ma~~L~d 1019 (1128)
T COG5098 969 ADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQLGKMALLLTD 1019 (1128)
T ss_pred hHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeeccchhhhHhhccC
Confidence 889999999999988999999999999999887666666677777776644
|
|
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=80.81 E-value=17 Score=37.41 Aligned_cols=100 Identities=14% Similarity=0.134 Sum_probs=70.7
Q ss_pred cCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH--HHHHHHHHHH
Q 000194 571 ADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHLIQLLTY 648 (1880)
Q Consensus 571 ~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l~~~l~~ 648 (1880)
.++|+..-..+.+.++... -...+.++.|-.-++..++.++..|+.+|..++++++..+...+ ++++.+++.-
T Consensus 14 ~~~D~~~il~icd~I~~~~-----~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l 88 (133)
T cd03561 14 EEPDWALNLELCDLINLKP-----NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKI 88 (133)
T ss_pred CCccHHHHHHHHHHHhCCC-----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHH
Confidence 4578888888888775321 11246788888889999999999999999999999976553333 2445554444
Q ss_pred HhcC-CCChHhHHHHHHHHHHHHHhCcc
Q 000194 649 LEQS-SADNKCREESAKLLGCLIRNCER 675 (1880)
Q Consensus 649 l~~~-~~~~~~r~~a~~~L~~l~~~~~~ 675 (1880)
+... ..+..++..++.++..-....+.
T Consensus 89 ~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 89 AKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4331 25678888888888888877653
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=80.44 E-value=2.9 Score=38.99 Aligned_cols=77 Identities=23% Similarity=0.243 Sum_probs=45.6
Q ss_pred cchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc---hhh-hhhcHHHHHHhcCHHHHH
Q 000194 1299 RAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK---ELD-VQLKESWYEKLQRWDDAL 1374 (1880)
Q Consensus 1299 ~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~---~~~-~~~~~~~~e~lg~W~~Al 1374 (1880)
+.|..|+.+.|..+...+.+ + ....+-.|...|-++|+.+.+..+++.... +.. .-+.+.-+.++|+|++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~---~-~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTN---P-NSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGT---H-HHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCC---h-hHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 67888999888877643210 1 233445577888888888888777753111 101 112244577778888887
Q ss_pred HHHHH
Q 000194 1375 KAYTN 1379 (1880)
Q Consensus 1375 ~~y~~ 1379 (1880)
..|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77764
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=80.32 E-value=2.7e+02 Score=39.19 Aligned_cols=141 Identities=15% Similarity=0.031 Sum_probs=88.2
Q ss_pred cchhhhhhhccchhcccccccCCCCcHHHHHHHHHH--------HhhcCChHHHhHHHHHHhchhh---hhhc-HHHHHH
Q 000194 1299 RAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHI--------NNQLHQHEAAVGILTYAQKELD---VQLK-ESWYEK 1366 (1880)
Q Consensus 1299 ~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~i--------y~~L~~~D~~~Gi~~~~~~~~~---~~~~-~~~~e~ 1366 (1880)
+.|.+|.-+.|..+... ++..+....|..+ |.+.++.+.+-- .+....... ..+. ...|++
T Consensus 122 ~~~~kA~~~ye~l~~~~------P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQ------KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred ccChhHHHHHHHHHHhC------CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHH
Confidence 88999999888877654 3345666667776 888877776665 443222211 2333 557999
Q ss_pred hcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHH-hhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhh
Q 000194 1367 LQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAA-LARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQ 1445 (1880)
Q Consensus 1367 lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~-Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~ 1445 (1880)
+|+|++|+..|.+..+..+... +....+-..+.+ +++ +.+..+.+.... .+ ..+....++..-..|+-+.
T Consensus 195 l~dw~~Ai~lL~~L~k~~pl~~---~~~~~L~~ay~q~l~~-~~a~al~~~~lk-~d----~~l~~ala~~yi~~G~~~~ 265 (987)
T PRK09782 195 LKQWSQADTLYNEARQQNTLSA---AERRQWFDVLLAGQLD-DRLLALQSQGIF-TD----PQSRITYATALAYRGEKAR 265 (987)
T ss_pred HhCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhhCH-HHHHHHhchhcc-cC----HHHHHHHHHHHHHCCCHHH
Confidence 9999999999998876544332 222223235555 577 666665322111 11 2233355678888999999
Q ss_pred HHHHHhhcCC
Q 000194 1446 MAEYVSRLDD 1455 (1880)
Q Consensus 1446 ~~~~~~~~~~ 1455 (1880)
..+.+..++.
T Consensus 266 A~~~L~~~~~ 275 (987)
T PRK09782 266 LQHYLIENKP 275 (987)
T ss_pred HHHHHHhCcc
Confidence 9888887754
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=80.30 E-value=1.4e+02 Score=35.90 Aligned_cols=71 Identities=20% Similarity=0.345 Sum_probs=47.9
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCc---chhHHHHHHHHHHHHhh
Q 000194 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRV---EYRRFAAVLILKEMAEN 183 (1880)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~---~~~R~aA~~~l~~la~~ 183 (1880)
|.++++ ++. .+|.-+...|+..+..|+..++......+...++..+.|+.+... ......|+.+|..+...
T Consensus 107 ~~~fl~-ll~-~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~ 180 (312)
T PF03224_consen 107 YSPFLK-LLD-RNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS 180 (312)
T ss_dssp HHHHHH-H-S--SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred HHHHHH-Hhc-CCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence 556666 665 569999999999999999987666665566778889999874222 23447778888887754
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 110 bits (274), Expect = 4e-24
Identities = 136/1086 (12%), Positives = 310/1086 (28%), Gaps = 90/1086 (8%)
Query: 43 ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALG 102
A+ L +++ + L ++ + + + + A++ + L+
Sbjct: 26 ATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNL----AVKCLGPLVSKVKE 81
Query: 103 ENASK-VSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQV-KMALDW 160
V M + E RD + L + + + G+ A V ++
Sbjct: 82 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSA 141
Query: 161 LRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRA 220
+ + A+ I+ +M + + + L P LAVR+R + AL
Sbjct: 142 IAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGH 201
Query: 221 CLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR 280
+ + + E L +N + + + + + R G +
Sbjct: 202 LVMSCGNIV-------FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLE 254
Query: 281 EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI-PAERD 339
++ +V+++ D +R ++ +N L L P
Sbjct: 255 KIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV-YPHVSTIINICLKYLTYDPNYNY 313
Query: 340 SGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEP 399
A G+ + ++ + + + + L V + M P
Sbjct: 314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK 373
Query: 400 HVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAA 459
V L F D + P +Q L D + ++ + +
Sbjct: 374 TVSPALISRFKEREENVKADVFHAYLSLLKQTRP-VQSWLCDPDAMEQGETPLTMLQSQV 432
Query: 460 TPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYL-DDEDKAT 518
I + ++ S + + + + ++ L D +
Sbjct: 433 PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSN 492
Query: 519 RKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVR 578
K AL C ++ + S F + + ++A V D +
Sbjct: 493 LKIDALSCLYVILCNHSPQVFHPHVQA----------------LVPPVVACVGDPFYKIT 536
Query: 579 HSIFSS----------LYGNRGFDDFLAQADCLSAIFAALNDEDF--DVREYAISVAGRL 626
L FD D + L D +V+E AIS G++
Sbjct: 537 SEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQI 596
Query: 627 SEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL-IRPYIAPIH 685
L L L + + R + K L + + ++ +RP +
Sbjct: 597 ICNLG----DNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGV 652
Query: 686 KALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVT 745
L + L + G L + L + + + + + + L+ + +
Sbjct: 653 PILASFL-----RKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMH 707
Query: 746 KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALD 805
++A+S L + + ++ + +L L+ ++ L+ + +
Sbjct: 708 VSQMAISFLTTLAKVYPSSLSKISG--SILNELIGLVRSPLLQGGALSAMLDFFQALVVT 765
Query: 806 PHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRI 865
+ L + S + H Q + V + +
Sbjct: 766 GTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDV 825
Query: 866 LRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGT 925
S S + SL + + L L V+ + F ++ +
Sbjct: 826 KNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAF------SSPSEEVKSAASYA 879
Query: 926 LVSIVRQHIRKYLQELFSLISE-------LWSSFSLPATNRTYRGLP--VLHLVQQLCLA 976
L SI ++ +YL + I+ L S ++ + GL V ++ L
Sbjct: 880 LGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKH 939
Query: 977 LNDE---------------FRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGT 1021
+LP L + V + T+
Sbjct: 940 CECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQP 999
Query: 1022 LDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR--VQVTGHISSLVHHLKLVLDG 1079
+D + + ++ + D +++RR A+ T + + +++ HL
Sbjct: 1000 IDPLLKNCIGDFLKTLE-DPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKV 1058
Query: 1080 KNDELR 1085
+ + +R
Sbjct: 1059 RKELIR 1064
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 100 bits (248), Expect = 4e-21
Identities = 142/1118 (12%), Positives = 325/1118 (29%), Gaps = 119/1118 (10%)
Query: 131 ASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNV 190
+ ++ L + + D VKM L L D+ + AV L +
Sbjct: 27 TNDLMTELQKDSIKLDDDSERKVVKMILKLL-EDKNGEVQNLAVKCLGPLVSKVK---EY 82
Query: 191 HVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYY--RMFEATQDGL 248
V VD + + +R+ + L+ + + + + ++ +
Sbjct: 83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAI 142
Query: 249 GRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRI 308
+ V +L + ++L G +++ + + +L L VR L +
Sbjct: 143 AKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHL 202
Query: 309 AHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLR 368
+ + ++ ++ L+ + + + ++ + YL I +
Sbjct: 203 VMSCGNIVFVDLIEHLLSE-LSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVV 261
Query: 369 EAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSA-GLSTTLVDALEQITVS 427
+ + + + R + PHV +++I E +
Sbjct: 262 KFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDEN 321
Query: 428 IPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQ 487
D + + R AA V
Sbjct: 322 AMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV--------------------- 360
Query: 488 TLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRS 547
++ + + + +++ + ++ + D L+ + + +
Sbjct: 361 -VSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQ--TRPVQSWLCDPDA 417
Query: 548 NRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAA 607
G +++ V + + A+
Sbjct: 418 MEQGETPLTMLQSQVPNI-----------------------------------VKALHKQ 442
Query: 608 LNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLG 667
+ ++ R+ ++ L P + + + ++ L S+ + + ++ L
Sbjct: 443 MKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLY 502
Query: 668 CLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARV-------G 719
++ N ++ P++ + +VA + + I S L+ L +V
Sbjct: 503 VILCNHSPQVFHPHVQALVPPVVACVGD-----PFYKITSEALLVTQQLVKVIRPLDQPS 557
Query: 720 GFGMRQYISELMPLIVEALLDGAAVT-KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLL 778
F YI +L ++ L +E A+S +GQ++ + G + P L +
Sbjct: 558 SFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD--LPNTLQIF 615
Query: 779 LKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDE 838
L+ L E TR +K L ++ R G + +
Sbjct: 616 LERLKNE---ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLS 672
Query: 839 FPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLP 898
L +++ S A+ + L S Q + L + K
Sbjct: 673 ALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISG 732
Query: 899 KVLPDLFHTVRTC--DDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPA 956
+L +L VR+ + LV ++ Y+ L L ++S +
Sbjct: 733 SILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNL-GYMDLLRMLTGPVYSQSTAL- 790
Query: 957 TNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLE 1016
+ + + AL P ++ IQ + ++ D +L +L E
Sbjct: 791 -----THKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRST-DSIRLLALLSLGE 844
Query: 1017 VFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLV 1076
V L ++ F +++ AA L + G++ + +
Sbjct: 845 VGHHIDLSGQLELKSVILEAFS-SPSEEVKSAASYALGSI-----SVGNLPEYLPFVLQE 898
Query: 1077 LDGKNDELRKDAVDALC-CLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRRE 1135
+ + + + +L ++ A ++ +I LLLKH E E R
Sbjct: 899 ITSQPKR-QYLLLHSLKEIISSASVVGLKPYVENIWALLLKH------CECAEEGTRNVV 951
Query: 1136 PLILGSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQASQRSTKEDWAEW 1195
LG +P + L S A K +
Sbjct: 952 AECLGKLTLIDPETLLP--RLKGYLISGSSYARSSVVTAVKFTISDH--PQPIDPLLKNC 1007
Query: 1196 MRHLSIELLKESPSP----ALRTCARLAQLQPFVGREL 1229
+ ++ L++ AL T A +P + R+L
Sbjct: 1008 IGDF-LKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDL 1044
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 95.6 bits (236), Expect = 1e-19
Identities = 109/878 (12%), Positives = 246/878 (28%), Gaps = 122/878 (13%)
Query: 424 ITVSIPSLLPTIQD-----RL--LDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDL 476
+ I +LL + R + + L K + + V I + + D
Sbjct: 4 ASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKV---VKMILKLLEDK 60
Query: 477 NGSAPVQ-LALQTLARFNFKGHD-LLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSF 534
NG VQ LA++ L K + +E D++ + + + R +++ ++
Sbjct: 61 NGE--VQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELP 118
Query: 535 SGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVR---HSIFSSLYGNRGF 591
S + A+ + +++ +L A DV+V+ I + + +G
Sbjct: 119 PASSGSALAAN-----------VCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 167
Query: 592 DDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ 651
L+ + L VR+ I G L V L HL+ L
Sbjct: 168 LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSEL----S 223
Query: 652 SSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVT 711
+ + + + R I Y+ I +V ++ + +
Sbjct: 224 KNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD-----DDELREYCIQA 278
Query: 712 VGDLARVGGFGMRQYISELMPLIVEAL--------------------------------- 738
R + ++S ++ + ++ L
Sbjct: 279 FESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDE 338
Query: 739 ---LDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVL 795
D + R A L VV + ++ + Y + L+ E + + +V
Sbjct: 339 YSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF--YKTVSPALISRF-KEREENVKADVF 395
Query: 796 KVLGIMGALDPHAHKRNQQLSGSHGEVTRAA------------------SDSGQHIQPMD 837
+ T S + Q
Sbjct: 396 HAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCF 455
Query: 838 EFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSM--GLGCVP 895
+L + + V + ++ L D S +S + S +++ P
Sbjct: 456 NMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHP 515
Query: 896 YLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVR-------QHIRKYLQELFSLISEL 948
++ ++P + V + LV ++R Y+++LF+ +
Sbjct: 516 HVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKR 575
Query: 949 WSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYV 1008
+ + + + + Q+ L D + LP L ++ L +
Sbjct: 576 LKAADIDQEVKE----RAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKA 631
Query: 1009 LDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLI---PRVQVTGH 1065
L ++ L + +P L + ++ + L LI
Sbjct: 632 LTLI-AGSPLKIDLRPVLGEGVPILASFLR-KNQRALKLGTLSALDILIKNYSDSLTAAM 689
Query: 1066 ISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFT----IFIPSIHKLLLKHRLRH 1121
I +++ L ++ + + + A+ L LA + + + L+ L+
Sbjct: 690 IDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQG 749
Query: 1122 KEFEEIEGRLRRREPLILGSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGH 1181
+ + + L R + V S Y L
Sbjct: 750 GALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRA 809
Query: 1182 QASQRSTKEDWAEWMRHLSIELLKESPSPALRTCARLA 1219
+ + ++ + ++R A L+
Sbjct: 810 CPKEG------PAVVGQFIQDVKNSRSTDSIRLLALLS 841
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 87.1 bits (214), Expect = 4e-17
Identities = 93/695 (13%), Positives = 198/695 (28%), Gaps = 89/695 (12%)
Query: 157 ALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVE 216
AL ++ R +L E+ H+ V I +L D + + ++
Sbjct: 438 ALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKS-SSSNLKID 496
Query: 217 ALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMM 276
AL ++ + + +G + +LL +L++
Sbjct: 497 ALSCLYVILCNHSPQVFHPHVQALVPPVVACVG-DPFYKITSEALLVTQQLVKVIRPLDQ 555
Query: 277 SRYREVAEIVLR-YLEHRDRLVRLSITSLLPRIA-------HFLRDRFVTNYLKICMNHI 328
+ + + RL I + A + + L +
Sbjct: 556 PSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIF 615
Query: 329 LTVLRIPAERDSGFIALGEMAG-ALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVG 387
L L+ R + AL +AG L +L L L + + L L+ +
Sbjct: 616 LERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALD 675
Query: 388 NIARAMGPVMEPHVRGLLDIMFSAGLSTT-------LVDALEQITVSIPSLLPTIQDRLL 440
+ + + + + +S + + L + PS L I +L
Sbjct: 676 ILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSIL 735
Query: 441 DCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLL 500
+ + ++ +A + Q L +
Sbjct: 736 NELIGLVRSPLLQGGALSA----------------------MLDFFQALVVTGTNNLGYM 773
Query: 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560
+ R T K + K VA + + ++ +
Sbjct: 774 DLLRMLTGPVYSQSTALTHKQSYYSIAKCVAAL-------------TRACPKEGPAVVGQ 820
Query: 561 LVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAI 620
++ + + D+ +R SL D Q + S I A + +V+ A
Sbjct: 821 FIQDVKNSRSTDS---IRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAAS 877
Query: 621 SVAGRLSEKNPAYVLPAL----------RRHLIQLLTYLEQSSADNKCREESAKLLGCLI 670
G +S N LP + + L+ L + S++ + + L+
Sbjct: 878 YALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLL 937
Query: 671 RNCERLIRPY----------IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
++CE + I + L+G I+ ++ S V+ V
Sbjct: 938 KHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHP 997
Query: 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780
+ + + ++ L D + R VA+ T + +I +L L
Sbjct: 998 QPIDPLLKNCIGDFLKTLED-PDLNVRRVALVTFNSAAHNKPSLIRDL--LDTVLPHLYN 1054
Query: 781 MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQL 815
R+E+++ + + P H + L
Sbjct: 1055 ET------KVRKELIREV----EMGPFKHTVDDGL 1079
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 89.0 bits (220), Expect = 2e-19
Identities = 33/242 (13%), Positives = 86/242 (35%), Gaps = 26/242 (10%)
Query: 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSE 628
++ + + +R ++ + + + L + L+D+ + V + AIS+ +++
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61
Query: 629 KNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKAL 688
P L++ L LL S +E AK G + + L++ I +
Sbjct: 62 TREDLYEPMLKK-LFSLLK----KSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANY 116
Query: 689 VARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKRE 748
+ V + ++A+ M + + M +L +
Sbjct: 117 ---------RIGDEKTKINVSYALEEIAKANPMLMASIVRDFMS-----MLSSKNREDKL 162
Query: 749 VAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHA 808
A++ + + +++ + P+ L ++ +L+ R ++ L + L+
Sbjct: 163 TALNFIEAMGENSFKYVNPF------LPRIINLLHDGD-EIVRASAVEALVHLATLNDKL 215
Query: 809 HK 810
K
Sbjct: 216 RK 217
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 8e-10
Identities = 29/265 (10%), Positives = 84/265 (31%), Gaps = 47/265 (17%)
Query: 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560
E ++ LDD+ K+A + R L E
Sbjct: 31 ESVLKKLIELLDDDLWTVVKNAISIIMVI---------------------AKTREDLYEP 69
Query: 561 LVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAI 620
+++KL + + I + G + + +FA D +
Sbjct: 70 MLKKLFSLLKKSEAIPLTQEIAKAF-GQMAKEKPELVKSMIPVLFANYRIGDEKTKINVS 128
Query: 621 SVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680
+++ NP + +R ++ L + ++ + + + + N + + P+
Sbjct: 129 YALEEIAKANPMLMASIVR----DFMSMLSSKNRED--KLTALNFIEAMGENSFKYVNPF 182
Query: 681 IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEAL-- 738
+ ++ L + + + + + + LA + +L ++++ L
Sbjct: 183 L----PRIINLLHD-----GDEIVRASAVEALVHLATLN--------DKLRKVVIKRLEE 225
Query: 739 LDGAAVTKREVAVSTLGQVVQSTGY 763
L+ + + + +++ G+
Sbjct: 226 LNDTSSLVNKTVKEGISRLLLLEGH 250
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 82.5 bits (203), Expect = 1e-15
Identities = 63/602 (10%), Positives = 167/602 (27%), Gaps = 88/602 (14%)
Query: 556 RLIEELVEKLLIAAVADADVTVRHSIFSSL-----YGNRGFDDFLAQADCLSAIFAALND 610
L+ + A + VR + ++L + + + + + A
Sbjct: 176 SSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQA 235
Query: 611 EDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLI 670
ED +V+ A ++ K ++ P + + LT S ++K + + +
Sbjct: 236 EDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSPNDKVASMTVEFWSTIC 294
Query: 671 RNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGD---------------- 714
+ L + + I + +L +
Sbjct: 295 EEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGAC 354
Query: 715 LARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQL 774
L + ++ + E + RE AV G ++ V Q
Sbjct: 355 LQLFAQNCGNHILEPVLEFV-EQNITADNWRNREAAVMAFGSIMDGPDKVQRT-YYVHQA 412
Query: 775 LGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQ 834
L +L ++N D + + R A + I
Sbjct: 413 LPSILNLMN---------------------DQSLQVKETTAWC----IGRIADSVAESID 447
Query: 835 PMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG-- 892
P + + + + L+D +++ + + +
Sbjct: 448 P----------------QQHLPGVVQACLIGLQDHP--KVATNCSWTIINLVEQLAEATP 489
Query: 893 --CVPYLPKVLPDLFHTVRTCDD--YLKDYITWKLGTLVSIVRQHIRKYLQELFSLISEL 948
+ P ++ L D+ + L T+V + + + + + +
Sbjct: 490 SPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDK 549
Query: 949 WSSFSLPATN-------RTYRGL--PVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDA 999
N ++ + L +L ++ + +++ ++L
Sbjct: 550 LGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKK 609
Query: 1000 ERCNDYTYVLDILHTL-EVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIP 1058
+ V + L G ++++ P L++ + A+ + +
Sbjct: 610 DSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALN-QVDSPVSITAVGFIADISN 668
Query: 1059 RV--QVTGHISSLVHHL--KLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLL 1114
+ + ++++ L + EL+ + +A +G DF ++ I L
Sbjct: 669 SLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALC 728
Query: 1115 LK 1116
+
Sbjct: 729 VA 730
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 75.6 bits (185), Expect = 1e-13
Identities = 93/765 (12%), Positives = 213/765 (27%), Gaps = 115/765 (15%)
Query: 385 CVGNIARAMGPVME-PHVRGLLDIMFSAGLSTTLVDA--------LEQITVSIPSLLPTI 435
+ IA P P + ++ A + A E +L+ +
Sbjct: 118 LIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS 177
Query: 436 QDRLLDCISFVLSKSHYSQARPAAT-----------------PIRGNVMNIPQQVSDLNG 478
+ L+ + S R AA R +M + + +
Sbjct: 178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAED 237
Query: 479 SAPVQLALQTLARFNFKGHDLLEFARDSVVLYL-----DDEDKATRKDAALCCCKLVANS 533
A L + K + ++ + + L + +
Sbjct: 238 IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEE 297
Query: 534 FSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDD 593
++ I+++V L + + + ++
Sbjct: 298 IDIAYELAQFPQSPLQSYNFALSSIKDVVPNL-LNLLTRQNEDPEDDDWNVSMSAGACLQ 356
Query: 594 FLAQAD-------CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLL 646
AQ L + + +++ RE A+ G + + ++ Q L
Sbjct: 357 LFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQR---TYYVHQAL 413
Query: 647 TYLEQSSADNKC--REESAKLLGCLIRNCERLIRP--YIAPIHKALVARLLEGTGINANN 702
+ D +E +A +G + + I P ++ + +A + L + +
Sbjct: 414 PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD------HP 467
Query: 703 GIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAA-----VTKREVAVSTLGQV 757
+ + T+ +L I P +V+ L+ A R A S L +
Sbjct: 468 KVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTM 527
Query: 758 VQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSG 817
V+ + + ++ L + + L+ + L S
Sbjct: 528 VEYATDTVAET--SASISTFVMDKLGQTMSVDENQLTLEDAQSLQEL----------QSN 575
Query: 818 SHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQK 877
+ S ++P + + + R+L A
Sbjct: 576 ILTVLAAVIRKSPSSVEP------------------VADMLMGLFFRLLEKKDSAFIEDD 617
Query: 878 VVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKY 937
V ++ + S+G G YL P L + D + + + + + + R+Y
Sbjct: 618 VFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRY 677
Query: 938 LQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLS 997
+ ++++++ S+ + + VL + + + +F +L I+ C+ +
Sbjct: 678 SDAMMNVLAQMISNPNARRELKP----AVLSVFGDIASNIGADFIPYLNDIMALCVAAQN 733
Query: 998 DAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLI 1057
+ D + +L L DA V I + L
Sbjct: 734 TKPENGTLEAL--------------DYQIKVLEAVL------DAYVGIVAGLHDKPEALF 773
Query: 1058 PRVQVTGHISSLVHHLKLVLDGK-NDELRKDAVDALCCLAHALGE 1101
P V I + + D + AV + +A +
Sbjct: 774 PYVG---TIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPD 815
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 5e-11
Identities = 69/556 (12%), Positives = 171/556 (30%), Gaps = 48/556 (8%)
Query: 602 SAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREE 661
+ AL + + A + +++ + L++++ + +
Sbjct: 98 TNALTALVSIEPRIANAAAQLIAAIAD---IELPHGAWPELMKIMVDNTGAEQPENVKRA 154
Query: 662 SAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARV--G 719
S LG + + + + ++ + L+A + + + L + D
Sbjct: 155 SLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN 214
Query: 720 GFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLL 779
+ LM ++ EA + L +++ + PY Q L L
Sbjct: 215 NMEREGERNYLMQVVCEATQAEDIEVQAAA-FGCLCKIMSKYYTFMKPY--MEQALYALT 271
Query: 780 KMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEF 839
++ + + Q S + A S + + P
Sbjct: 272 IATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLN 331
Query: 840 PMDLWPSFATSEDYYSTVAINSLMRILRD---------------PSLASYHQKVVGSLMF 884
+ +D+ +++ + +++ ++ + + + + +
Sbjct: 332 LLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVM 391
Query: 885 IFKSMGLGC-----VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQ 939
F S+ G Y+ + LP + + + +K+ W +G + V + I Q
Sbjct: 392 AFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ-Q 450
Query: 940 ELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDA 999
L ++ T +++LV+QL A P ++ I +
Sbjct: 451 HLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI 510
Query: 1000 ERCNDY-TYVLDILHTL-----EVFGGTLDEHMHLLLPALIRLFKVDAPV---------- 1043
+ + L T+ + T ++ L + VD
Sbjct: 511 DNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQ 570
Query: 1044 DIRRAAIETLTRLIPRV--QVTGHISSLVHHLKLVLD-GKNDELRKDAVDALCCLAHALG 1100
+++ + L +I + V L+ +L+ + + D A+ LA +LG
Sbjct: 571 ELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLG 630
Query: 1101 EDFTIFIPSIHKLLLK 1116
+ F ++ + LLK
Sbjct: 631 KGFEKYLETFSPYLLK 646
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 1e-06
Identities = 77/619 (12%), Positives = 186/619 (30%), Gaps = 88/619 (14%)
Query: 170 RFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL-RDPTLAVRERAVEALRACLRVIEKR 228
+ AA L ++ T ++ + + A+ +A + P V VE + E+
Sbjct: 241 QAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWST---ICEEE 297
Query: 229 ETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLR 288
+ +P+ S + +L ++ +++ N +
Sbjct: 298 IDIAY-----------ELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTR--------QNE 338
Query: 289 YLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEM 348
E D V +S + L A + + L+ +I R++ +A G +
Sbjct: 339 DPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADN--WRNREAAVMAFGSI 396
Query: 349 A-GALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDI 407
G + +Y+ + + + + C+G IA ++ ++P
Sbjct: 397 MDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ------- 449
Query: 408 MFSAGLSTTLVDALEQITVSIPSLLPTIQD---------RLLDCISFVLSKSHYSQARPA 458
L + + + L +QD + + L+++ S
Sbjct: 450 -----------QHLPGV---VQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNF 495
Query: 459 ATPIRGNVMNIPQ-QVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLD----- 512
+ ++ ++ N A AL T+ + + E + +D
Sbjct: 496 YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYA--TDTVAETSASISTFVMDKLGQT 553
Query: 513 --DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAV 570
++ + A +L +N + + A+ ++ + + L+
Sbjct: 554 MSVDENQLTLEDAQSLQELQSNILTVL------AAVIRKSPSSVEPVADMLMGLFFRLLE 607
Query: 571 ADADVTVRHSIFSSLYG-----NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGR 625
+ +F ++ +GF+ +L + ALN D V A+
Sbjct: 608 KKDSAFIEDDVFYAISALAASLGKGFEKYLET--FSPYLLKALNQVDSPVSITAVGFIAD 665
Query: 626 LSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIH 685
+S + L + +A + + + G + N PY+ I
Sbjct: 666 ISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIM 725
Query: 686 KALVARL------LEGTGINANNGIISGVLVTVGDLARVGGFG---MRQYISELMPLIVE 736
VA ++ ++ VL + + Y+ + I +
Sbjct: 726 ALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQ 785
Query: 737 ALLDGAAVTKREVAVSTLG 755
D ++ + + +G
Sbjct: 786 VAEDPQLYSEDATSRAAVG 804
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 81.4 bits (200), Expect = 2e-15
Identities = 109/698 (15%), Positives = 207/698 (29%), Gaps = 96/698 (13%)
Query: 29 ILADLCTHGNP--KEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAEN 86
L L + EGA AL+K E+ A L + R ++ + + + +
Sbjct: 132 KLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIR 191
Query: 87 LGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKR--DREILVLASKVLGHLARAGGA 144
A+ +++ I + + +++ +F + + E+ + L L
Sbjct: 192 SHAVACVNQFIIS---RTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD 248
Query: 145 MTADEVEFQVKMALDWLRGDRVEYRRFAAVLIL-------------KEMAENASTVFNVH 191
+ V+ L + A L + + + + N
Sbjct: 249 RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGM 308
Query: 192 VAEFVDAIWVALR----------DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMF 241
+D I + +R+ + AL V + +
Sbjct: 309 KYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELL 368
Query: 242 EATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSI 301
+ +L +G + + M+ E+ +++ L + LVR
Sbjct: 369 --------FHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSIT 420
Query: 302 TSLLPRIAHFLRDRFVTNYLKICMNHILTVL--RIPAERDSGFIALGEMAGALDGELFHY 359
L R AH++ + YLK M +L + +++ A + EL Y
Sbjct: 421 CWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY 480
Query: 360 LPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVD 419
L I L A + + K L +G +A ++G + + L L+
Sbjct: 481 LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLN-------KPEYIQMLMPPLIQ 533
Query: 420 ALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGS 479
+ L P LL+C+S V + S P P+ +N+
Sbjct: 534 KWNMLKDEDKDLFP-----LLECLSSVATALQ-SGFLPYCEPVYQRCVNL---------- 577
Query: 480 APVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSF 539
VQ L N + + DK A L G +
Sbjct: 578 --VQKTLAQAMLNNAQPDQY------------EAPDKDFMIVALDLLSGLAEGL--GGNI 621
Query: 540 TQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG--NRGFDDFLAQ 597
Q + + L+ + D VR S F+ L F
Sbjct: 622 EQL--------------VARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC 667
Query: 598 A-DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADN 656
D + + LN E V A G +S + + P + L QL+ + + +
Sbjct: 668 IADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPK 727
Query: 657 KCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLE 694
E +A +G L C + + P + + L
Sbjct: 728 TLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRN 765
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 76.0 bits (186), Expect = 9e-14
Identities = 85/591 (14%), Positives = 187/591 (31%), Gaps = 91/591 (15%)
Query: 566 LIAAVADADVTVRHS---IFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISV 622
+ + +R + +R L + +FA DE+ +VR+
Sbjct: 179 FLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRA 238
Query: 623 AGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE---------ESAKLLGCLIRNC 673
L E +LP + +++ + Q +N E E L+R+
Sbjct: 239 LVMLLEVRMDRLLPHMHN-IVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHL 297
Query: 674 ERLIRPYIAPIHKALVARLLEGTGINANNGIISG-----VLVTVGDLARVGGFGMRQYIS 728
+LI + + + + +L + +G + V R +
Sbjct: 298 PKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELL 357
Query: 729 ELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVW 788
+ +++ LL +E + LG + + + PY P+L+ L++ L+
Sbjct: 358 PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY--LPELIPHLIQCLS----- 410
Query: 789 STRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFA 848
D A R+ + + +
Sbjct: 411 ----------------DKKALVRS-----------ITCWTLSR-------YAHWVVSQPP 436
Query: 849 TSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTV 908
D Y + L++ + D + + + + + VPYL +L L
Sbjct: 437 ---DTYLKPLMTELLKRILDSN-KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF 492
Query: 909 RTCDDYLKDYITWKLGTLVSIVRQHIRK--YLQELFSLISELWSSFSLPATNRTYRGLPV 966
+ +GTL V H+ K Y+Q L + + W+ + P+
Sbjct: 493 SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL----FPL 548
Query: 967 LHLVQQLCLALNDEFRTHLPVILPCCIQVLS-------------DAERCNDYTYVLDILH 1013
L + + AL F + + C+ ++ D D +++ L
Sbjct: 549 LECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALD 608
Query: 1014 TLEVFGGTLDEHM------HLLLPALIRLFKVDAPVDIRRAAIETLTRLI--PRVQVTGH 1065
L L ++ +L + + + P ++R+++ L L V
Sbjct: 609 LLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMP-EVRQSSFALLGDLTKACFQHVKPC 667
Query: 1066 ISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLK 1116
I+ + L L+ + + +A A+ ++ +G + +IP + L++
Sbjct: 668 IADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVE 718
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 70.6 bits (172), Expect = 4e-12
Identities = 82/567 (14%), Positives = 173/567 (30%), Gaps = 52/567 (9%)
Query: 602 SAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREE 661
S + D +R + ++ K P L L LL S D E
Sbjct: 93 SECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLD-----SEDYNTCEG 147
Query: 662 SAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF 721
+ L + + ++ + ++ +++ I S + V
Sbjct: 148 AFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 207
Query: 722 GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKM 781
+ +I + + D ++ V L +++ + P+ ++ +L+
Sbjct: 208 ALMLHIDSFIENLFALAGDEEPEVRKNV-CRALVMLLEVRMDRLLPH--MHNIVEYMLQR 264
Query: 782 LNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPM 841
+ + E + + + L + S I +
Sbjct: 265 TQDQD-ENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVE 323
Query: 842 DLWPSFATSEDY----YSTVAINSLMRILRDPSLASYHQKVVGSL-----------MFIF 886
T D+ S A++ L + RD L + L + +
Sbjct: 324 GGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVL 383
Query: 887 KSMGLGC----VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVR-----QHIRKY 937
++ GC +PYLP+++P L + ++ W L V +++
Sbjct: 384 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 443
Query: 938 LQELFSLISEL-----------WSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLP 986
+ EL I + +++ A L +++ L A + +L
Sbjct: 444 MTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLA--YILDTLVFAFSKYQHKNLL 501
Query: 987 VILPCCIQVLSDA--ERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPV- 1043
++ I L+D+ N Y+ ++ L L + L P L L V +
Sbjct: 502 ILY-DAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQ 560
Query: 1044 -DIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGED 1102
R + VQ T + L + + + + A+D L LA LG +
Sbjct: 561 SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN 620
Query: 1103 FTIFIPSIHKL-LLKHRLRHKEFEEIE 1128
+ + L L+ ++ K E +
Sbjct: 621 IEQLVARSNILTLMYQCMQDKMPEVRQ 647
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 1e-11
Identities = 69/536 (12%), Positives = 170/536 (31%), Gaps = 45/536 (8%)
Query: 592 DDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ 651
D L + D D+++R+ + + L+ +LP + L +LL
Sbjct: 314 DIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF---- 369
Query: 652 SSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVT 711
+ +E +LG + C + + PY+ + L+ L + + S T
Sbjct: 370 -HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS-----DKKALVRSITCWT 423
Query: 712 VGDLAR-VGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNE 770
+ A V Y+ LM +++ +LD + E A S + + + PY
Sbjct: 424 LSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQ-EAACSAFATLEEEACTELVPY-- 480
Query: 771 YPQLLGLLLKMLNG------ELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTR 824
+L L+ + +++ + +G + L +
Sbjct: 481 LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKD 540
Query: 825 AASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMF 884
D ++ + L F + +N + + L L + +
Sbjct: 541 EDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDK 600
Query: 885 IFKSMGLGCVPYLPKVL--------------PDLFHTVRTCDDYLKDYITWKLGTLVSIV 930
F + L + L + L ++ ++ ++ LG L
Sbjct: 601 DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKAC 660
Query: 931 RQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILP 990
QH++ + + ++ + + N + ++ + + E + ++P++L
Sbjct: 661 FQHVKPCIADFMPILGTNLNPEFISVCN------NATWAIGEISIQMGIEMQPYIPMVLH 714
Query: 991 CCIQVL--SDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRA 1048
++++ + + + I V + + + + + + +
Sbjct: 715 QLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDS 774
Query: 1049 AIETLTRLIPRVQVTGHISSLVHHLKLVL--DGKNDELRKDAVDALCCLAHALGED 1102
A + +I V +G I + V D+LR L + +G++
Sbjct: 775 AFRGICTMI-SVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDE 829
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 2e-13
Identities = 86/573 (15%), Positives = 172/573 (30%), Gaps = 103/573 (17%)
Query: 556 RLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCL-SAIFAALNDEDFD 614
R EL+ L + D D V ++ L CL + + E+
Sbjct: 45 RTRSELLP-FLTDTIYDED-EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETV 102
Query: 615 VREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE 674
VR+ A+ +S ++ L H + L+ L R + L
Sbjct: 103 VRDKAVESLRAISHEHSPSDL---EAHFVPLVKRLAGGD-WFTSRTSACGLFSVCYPRVS 158
Query: 675 RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLI 734
++ + + L + + + +G+ A+V + SE++P+
Sbjct: 159 SAVKAELRQYFRNLCS--------DDTPMVRRAAASKLGEFAKV--LELDNVKSEIIPMF 208
Query: 735 VEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREV 794
D + R +AV + Q ++ + ++ L + + W R V
Sbjct: 209 SNLASD-EQDSVRLLAVEACVNIAQ----LLPQEDLEALVMPTLRQAAEDK-SWRVRYMV 262
Query: 795 LKVLGIMGALDPHAHKRNQ-------QLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSF 847
+ + + EV AAS + EF +L S
Sbjct: 263 ADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHK------VKEFCENL--SA 314
Query: 848 ATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMG--LGCVPYLPKVLPDLF 905
E+ + + + ++ D + Q V +L + + LG + +LP
Sbjct: 315 DCRENVIMSQILPCIKELVSDAN-----QHVKSALASVIMGLSPILGKDNTIEHLLPLFL 369
Query: 906 HTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLP 965
LKD VR +I L + +I
Sbjct: 370 -------AQLKD--------ECPEVRLNIISNLDCVNEVIG------------------- 395
Query: 966 VLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEH 1025
R +LP +++ D + L I+ + + G L
Sbjct: 396 ---------------IRQLSQSLLPAIVELAED----AKWRVRLAIIEYMPLLAGQLGVE 436
Query: 1026 M--HLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDE 1083
L + D IR AA L +L+ + ++++ + + N
Sbjct: 437 FFDEKLNSLCMAWLV-DHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYL 495
Query: 1084 LRKDAVDALCCLAHALGEDFTI--FIPSIHKLL 1114
R + + L+ G+D T +P++ ++
Sbjct: 496 HRMTTLFCINVLSEVCGQDITTKHMLPTVLRMA 528
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 2e-10
Identities = 82/633 (12%), Positives = 184/633 (29%), Gaps = 81/633 (12%)
Query: 22 SLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESN 81
SL + ++ +L N L K + A LG E R +L ++ +
Sbjct: 8 SLYPIAVLIDELR---NEDVQLRLNSIKKLSTIALALGVE---RTRSELLPFLTDTIYDE 61
Query: 82 DAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA 141
D L + + G V + ++ V+ + + A + L ++
Sbjct: 62 DEV-LLALAEQLGTFTTLVGGPEY--VHCLLPPLESLATVE-ETVVRDKAVESLRAISHE 117
Query: 142 GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWV 201
+ ++E + L G R +A + S + AE
Sbjct: 118 ---HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS---SAVKAELRQYFRN 171
Query: 202 ALRDPTLAVRERAVEALRACLRVIEKRETRWR-VQWYYRMFEATQDGLGRNAPVHSIHGS 260
D T VR A L +V+E + + + + QD + A
Sbjct: 172 LCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLA-------- 223
Query: 261 LLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFL-----RDR 315
+ A + + + + V + + E + VR + + + +
Sbjct: 224 VEACVNIAQLLPQEDLEAL--VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTD 281
Query: 316 FVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRR 375
V + + + V + + F + + LP I + +A +
Sbjct: 282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVK 341
Query: 376 GKPSLEALACVGNIARAMGPVMEPHVRGLLDIMF------SAGLSTTLVDALEQITVSIP 429
+ + ++ +G + + LL + + ++ L+ + I
Sbjct: 342 ----SALASVIMGLSPILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG 395
Query: 430 SLLPTIQDRLLDCISFVLSKSHYSQARPAAT-----PIRGNVMNIPQQVSDL------NG 478
+ LL I + + + + V ++++ L +
Sbjct: 396 I--RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDH 453
Query: 479 SAPV-QLALQTLARF--NFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFS 535
+ + A L + F V+ D + R L C +++
Sbjct: 454 VYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRM-TTLFCINVLSEVCG 512
Query: 536 GVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG-NRGFDDF 594
+ + + + ++ D VR ++ SL D+
Sbjct: 513 -------------------QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS 553
Query: 595 LAQADCLSAIFAALNDEDFDVREYAISVAGRLS 627
Q++ + D+D DV+ +A LS
Sbjct: 554 TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 5e-10
Identities = 74/590 (12%), Positives = 163/590 (27%), Gaps = 93/590 (15%)
Query: 485 ALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGA 544
L T G + + + E+ R A +
Sbjct: 71 QLGTFTTL-VGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP--------- 120
Query: 545 SRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAI 604
+E L+ T R S +A+
Sbjct: 121 -----------SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYF 169
Query: 605 FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAK 664
+D+ VR A S G ++ ++ +I + + L D+ R + +
Sbjct: 170 RNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSV-RLLAVE 225
Query: 665 LLGCLIRNC-ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGM 723
+ + + + + P + + + + V +L + G
Sbjct: 226 ACVNIAQLLPQEDLEALVMPTLRQAAE--------DKSWRVRYMVADKFTELQKA--VGP 275
Query: 724 RQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLN 783
++L+P + D A R A + + ++ Q+L + ++++
Sbjct: 276 EITKTDLVPAFQNLMKDCEAEV-RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS 334
Query: 784 GELVWSTRR-------EVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPM 836
+ + +LG ++ QL EV I +
Sbjct: 335 DA-NQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNI------ISNL 387
Query: 837 DEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY 896
D + S + +++ + D ++ + + +G
Sbjct: 388 DCVNEVI------GIRQLSQSLLPAIVELAEDAK-WRVRLAIIEYMPLLAGQLG------ 434
Query: 897 LPKVLPDLFHTVRTCDDYLKDYITWK----LGTLVSIVRQ-HIRKYLQELFSLISELWSS 951
+ + C +L D++ L +V + + + +
Sbjct: 435 -VEFFDEKL--NSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGD 491
Query: 952 FSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAE---RCNDYTYV 1008
N +R + L + L + +LP +++ D R N
Sbjct: 492 -----PNYLHR-MTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFN----- 538
Query: 1009 LDILHTLEVFGGTLDEHMH--LLLPALIRLFKVDAPVDIRRAAIETLTRL 1056
+ +L+ G LD + P L +L + D VD++ A E LT L
Sbjct: 539 --VAKSLQKIGPILDNSTLQSEVKPILEKLTQ-DQDVDVKYFAQEALTVL 585
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 70.3 bits (171), Expect = 4e-12
Identities = 97/688 (14%), Positives = 214/688 (31%), Gaps = 77/688 (11%)
Query: 170 RFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLA-VRERAVEAL-------RAC 221
R AA L +K N+ T + + W+A+ V+ + L +
Sbjct: 54 RVAAGLQIK----NSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSA 109
Query: 222 LRVI------EKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFM 275
+ + E +W + ++ + N+ H +L A+G + ++
Sbjct: 110 SQCVAGIACAEIPVNQWP-ELIPQLVANVTNP---NSTEHMKESTLEAIGYICQDIDPEQ 165
Query: 276 MSRYREVAEIVL---RYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVL 332
+ + E V+L+ T+ L F + F + + ++
Sbjct: 166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA 225
Query: 333 RIPAE---RDSGFIALGEMAGALDGELFHYL-PTITSHLREAIAPRRGKPSLEALACVGN 388
+ R + L ++ + Y+ P + + EA+ + +L+ + N
Sbjct: 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 285
Query: 389 IARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLS 448
+ + S Q V I + T QD D +
Sbjct: 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPC 345
Query: 449 KSHYSQARPAATPIRGNVMNI--PQQVSDLNGSAPVQ-----LALQTLARFNFKGH--DL 499
K+ AT +++ P + +A + L
Sbjct: 346 KAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL 405
Query: 500 LEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIE 559
+ A +++ + D R AA ++ + L++
Sbjct: 406 VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-----------LAPLLQ 454
Query: 560 ELVEKL-----LIAAVADADVTVRHSIFSSLYGNRGFDDFLAQA---------DCLSAIF 605
L+E L + + V A ++ + + + ++ L
Sbjct: 455 CLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETT 514
Query: 606 AALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ----------SSAD 655
+ ++R A + + + PA+++ + ++ L+Q +S
Sbjct: 515 DRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDR 574
Query: 656 NKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGT-GINANNGIISGVLVTVGD 714
+ + + L L ++ I ++A LL + G+ L+ V
Sbjct: 575 IQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVST 634
Query: 715 LARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQL 774
L V G +Y+ P + L + A AV +G + ++ I P+ ++
Sbjct: 635 LVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPF--CDEV 692
Query: 775 LGLLLKMLNGELV-WSTRREVLKVLGIM 801
+ LLL+ L E V S + ++L V G +
Sbjct: 693 MQLLLENLGNENVHRSVKPQILSVFGDI 720
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 2e-11
Identities = 85/564 (15%), Positives = 176/564 (31%), Gaps = 71/564 (12%)
Query: 585 LYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQ 644
+ + D +A + D + + GR E + ++L+
Sbjct: 265 IEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324
Query: 645 LLTYLEQSSAD------NKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGI 698
+LT + + + L L CE I P++ P ++
Sbjct: 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLP--------FIKEHIK 376
Query: 699 NANNGIISGVLVTVGDLARVGGFG-MRQYISELMPLIVEALLDGAAVTKREVAVSTLGQV 757
N + ++ G + ++ + + MP ++E + D + V R+ A T+G++
Sbjct: 377 NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVV-RDTAAWTVGRI 435
Query: 758 VQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSG 817
+ LL L++ L+ + R V +L A++
Sbjct: 436 CELLPEAAINDVYLAPLLQCLIEGLS-----AEPRVASNVCWAFSSLAEAAYEAADVADD 490
Query: 818 SHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRD--PSLASYH 875
T S + + + ++ ++ + A SLM I+++
Sbjct: 491 QEEPATYCLS---SSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAV 547
Query: 876 QKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDY-LKDYITWKLGTLVSIVR--- 931
QK +M L +VL H T D D + TL +++R
Sbjct: 548 QKTTLVIM-----------ERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQ 596
Query: 932 -QHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILP 990
Q + + + + ++ S + + L V L L EF ++ P
Sbjct: 597 HQDALQISDVVMASLLRMFQSTAGSGGVQED----ALMAVSTLVEVLGGEFLKYMEAFKP 652
Query: 991 CCIQVLSDAE----RCNDYTYVLDILHTLEV-FGGTLDEHMHLLLPALIRLFKVDAPVDI 1045
L + V D+ L+ DE M LLL L + +
Sbjct: 653 FLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLE---NLGNENVHRSV 709
Query: 1046 RRAAIETLTRLI--------PRVQVTGHISSLVHHLKLVLDGKND-------ELRKDAVD 1090
+ + + ++V +++L + +D + ELR+ ++
Sbjct: 710 KPQILSVFGDIALAIGGEFKKYLEVV--LNTLQQASQAQVDKSDYDMVDYLNELRESCLE 767
Query: 1091 ALCCLAHALGEDFTIFIPSIHKLL 1114
A + L D P + +
Sbjct: 768 AYTGIVQGLKGDQENVHPDVMLVQ 791
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 9e-06
Identities = 64/580 (11%), Positives = 178/580 (30%), Gaps = 69/580 (11%)
Query: 596 AQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSAD 655
A+ + + + L E + + VAG + P P L L+ +T ++
Sbjct: 87 ARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVT---NPNST 143
Query: 656 NKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDL 715
+E + L + C+ + + ++ +++G + + L L
Sbjct: 144 EHMKEST---LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVK--LAATNAL 198
Query: 716 ARVGGFGMRQ-YISELMPLIVEALLDGAAVTKREVAVS---TLGQVVQSTGYVITPYNEY 771
F I++ + + V V+ L +++ + Y
Sbjct: 199 LNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETY--M 256
Query: 772 PQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTR----AAS 827
L + + + ++ + + + + A
Sbjct: 257 GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK 316
Query: 828 DSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILR---------------DPSLA 872
+ Q++ P+ + +D+ A + +L +
Sbjct: 317 GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIK 376
Query: 873 SYHQKVVGSLMFIFKSMGLGC-----VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLV 927
+ + + + F + G P + + +P L ++ ++D W +G +
Sbjct: 377 NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436
Query: 928 SIVRQHI--RKYLQELFSLISELWSSFSLPATNRTY-------RGLPVLHLVQQLCLALN 978
++ + YL L + E S+ A+N + +
Sbjct: 437 ELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPAT 496
Query: 979 DEFRTHLPVILPCCIQVL--SDAERCNDYTYVLDILHTL-----EVFGGTLDEHMHLLLP 1031
+ +I+ ++ D + N + + L + + + + +++
Sbjct: 497 YCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIME 556
Query: 1032 ALIRLFKVDAPV----------DIRRAAIETLTRLIPRVQ---VTGHISSLVHHLKLVLD 1078
L ++ ++++ + D++ TL ++ +VQ ++ L +
Sbjct: 557 RLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQ 616
Query: 1079 G--KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLK 1116
+ +++DA+ A+ L LG +F ++ + L
Sbjct: 617 STAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGI 656
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 5e-04
Identities = 46/320 (14%), Positives = 96/320 (30%), Gaps = 49/320 (15%)
Query: 131 ASKVLGHLARAGGAMTADEVEFQVKMAL---DWLRGDRVEYRRFAAVLILKEMAENAST- 186
A L LA V +K + DW R AAV+ + E
Sbjct: 348 AGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW-------RYRDAAVMAFGCILEGPEPS 400
Query: 187 VFNVHVAEFVDAIWVALRDPTLAVRERAVEAL-RACLRVIEKRETRWRVQWYYRMFEATQ 245
V + + + ++DP++ VR+ A + R C + E + + +
Sbjct: 401 QLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND---VYLAPLLQCLI 457
Query: 246 DGLGRNAPVHS-----------IHGSLLAVGELLRNTGEFMMSRY-----REVAEIVLRY 289
+GL V S V + + +S +++ E R
Sbjct: 458 EGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRP 517
Query: 290 LEHRDRLVRLSITSLLPRIAHFLRDRF--VTNYLKICMNHILTVLRIPAE---------- 337
H++ L + SL+ + + +D + V + M + VL++ +
Sbjct: 518 DGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQF 577
Query: 338 ---RDSGFIALGEMAGALDGELF-HYLPTITSHLREAIAPRRGKPSL--EALACVGNIAR 391
+ L + + + + + L G + +AL V +
Sbjct: 578 NDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVE 637
Query: 392 AMGPVMEPHVRGLLDIMFSA 411
+G ++ +
Sbjct: 638 VLGGEFLKYMEAFKPFLGIG 657
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 7e-04
Identities = 43/286 (15%), Positives = 90/286 (31%), Gaps = 26/286 (9%)
Query: 170 RFAAVLILKEMAENASTVFNVHVAEFVDAI---------------WVALRDPTLAVRERA 214
R +A L E+ +N++ V + I + R ++
Sbjct: 525 RSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLL 584
Query: 215 VEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEF 274
L+ LR ++ ++ + V +L+AV L+ G
Sbjct: 585 CATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQE--DALMAVSTLVEVLGGE 642
Query: 275 MMSRYREVAEIVLRYLE-HRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLR 333
+ + L+ + + V L+ L+ + L+ + + M +L L
Sbjct: 643 FLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII-PFCDEVMQLLLENLG 701
Query: 334 IPAERDS----GFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNI 389
S G++A A+ GE YL + + L++A + K + + + +
Sbjct: 702 NENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNEL 761
Query: 390 ARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTI 435
+ V+GL V ++ I S + I
Sbjct: 762 RESCLEAYTGIVQGLKG---DQENVHPDVMLVQPRVEFILSFIDHI 804
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 6e-11
Identities = 103/698 (14%), Positives = 208/698 (29%), Gaps = 207/698 (29%)
Query: 559 EELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSA---IFAALNDEDFDV 615
++++ A V + D + S+ D + D +S +F L
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL--LSKQE 76
Query: 616 REYAISVAGRLSEKNPAYVLPALRRHLIQ----LLTYLEQSSADNKCREESAKLLGCLIR 671
V L N +++ ++ Q Y+EQ + AK
Sbjct: 77 EMVQKFVEEVL-RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK------Y 129
Query: 672 NCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELM 731
N R ++PY+ + +AL+ L + +I GV G G + +
Sbjct: 130 NVSR-LQPYLK-LRQALL-ELRPAKNV-----LIDGV----------LGSG-KTW----- 165
Query: 732 PLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTR 791
+ ++ L K + + L + +P +L+ML
Sbjct: 166 -VALDVCLSYKVQCKMDFKIFWL-----NLKNCNSP--------ETVLEMLQ-------- 203
Query: 792 REVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSE 851
K Q+ + + +S+ I + L S+
Sbjct: 204 ------------------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL----KSK 241
Query: 852 DYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTC 911
Y N L+ +L + + K + L C K+L + T
Sbjct: 242 PY-----ENCLL-VLLN----VQNAKAW-------NAFNLSC-----KIL------LTTR 273
Query: 912 DDYLKDYITWKLGTLVSIVRQH-----------IRKYL----QEL-----------FSLI 945
+ D+++ T +S+ + KYL Q+L S+I
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 946 SELWSSFSLPATNRTYR--GLPVLHLVQQLCL-ALN-DEFRTH------LP--VILPCCI 993
+E AT ++ L + + L L E+R P +P
Sbjct: 334 AESIRDG--LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP--T 389
Query: 994 QVLSDAERCNDYTYVLDILHTLEVFGGTLDEH---MHLLLPALIRLF--KVDAPVDIRRA 1048
+LS + V+ +++ L + +++ + +P++ K++ + R+
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 1049 AIETLTRLIPRVQVTGHISS----------LVHHLKLV-LDGKNDELRKDAVD------- 1090
++ IP+ + + + HHLK + + R +D
Sbjct: 449 IVDHYN--IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 1091 ------ALCCLAHALG--EDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLILGS- 1141
A L + + P I + I L + E ++ S
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICD---NDPKYERLVNAILDFLPKIEENLICSK 563
Query: 1142 -TAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQL 1178
T +++ L D +E +A KQ+
Sbjct: 564 YTDLLRIA-----------LMAEDEAIFE---EAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 1e-10
Identities = 90/591 (15%), Positives = 172/591 (29%), Gaps = 188/591 (31%)
Query: 899 KVLPDLFHTVRT---CDDYLK--------DYITWKL---GTLVSIVRQHIRKYLQELFSL 944
K + D+ ++ + D + + W L +V++ + + L+ +
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE--EMVQKFVEEVLRINYKF 93
Query: 945 ISELWSSF----SLPAT------NRTYRGLPVL--------HLVQQLCLALNDEFRTHLP 986
+ + S+ +R Y V +L AL E R
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL-ELRPAKN 152
Query: 987 VIL---PCC------IQVLSDAE---------------RCNDYTYVLDILHTLEVFGGTL 1022
V++ + V + CN VL++L L
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL------- 205
Query: 1023 DEHMHLLLPALIRLFKVDAPVDIRR---AAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
++ + P D +I+ + L RL+ + + L LVL
Sbjct: 206 ---LYQIDPNWTSR--SDHSSNIKLRIHSIQAELRRLLKSKP---YENCL-----LVLLN 252
Query: 1080 KNDELRKDAVDALC---------CLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGR 1130
+ +A + C + L T I H + L E + +
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVKSL--- 306
Query: 1131 LRRREPLILGSTAAQQLSRRVPVEVIS-DPLNDVDSDPYEDGTDAQKQLRGHQASQRSTK 1189
L + L Q L P EV++ +P +L S R
Sbjct: 307 LLK----YLD-CRPQDL----PREVLTTNPR----------------RLSIIAESIRDGL 341
Query: 1190 EDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHL 1249
W W +H++ + L + + L L+P R++F
Sbjct: 342 ATWDNW-KHVNCDKLTT----IIESS--LNVLEPAEYRKMF------------------- 375
Query: 1250 VQSLEMAF-SSPNIPPEILATL----------LNLAEFM-----EHDEKPLPI---DIRL 1290
L + F S +IP +L+ + + + + E K I I L
Sbjct: 376 -DRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 1291 LGALAEKCRAFAKALHYKEME-FEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGI-L 1348
L K ALH ++ + ++ D +++ + H +G L
Sbjct: 434 E--LKVKLEN-EYALHRSIVDHYNIPKTFDSDD------LIPPYLDQYFYSH---IGHHL 481
Query: 1349 TYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMR 1399
+ + L + R+ L+ S A N + TL +++
Sbjct: 482 KNIEHPERMTLFRMVFLDF-RF---LEQKIRHDSTAWNASGSILNTLQQLK 528
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 3e-09
Identities = 97/616 (15%), Positives = 188/616 (30%), Gaps = 174/616 (28%)
Query: 264 VGELLRNTGEFMMSRYREV----AEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTN 319
V E+LR +F+MS + + + Y+E RDRL + R +
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKY--NVSRLQPYLK 139
Query: 320 YLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPS 379
L+ L L R + + + + G+ GK
Sbjct: 140 -LRQA----LLEL-----RPAKNVLIDGVLGS------------------------GKTW 165
Query: 380 LEALACVGNIARAMGPVMEPHVRGLLDIMF--SAGLSTTLVDALEQITVSIPSLLPTIQD 437
+ C+ + + M+ + F + + P + +
Sbjct: 166 VALDVCL---SYKVQCKMDFKI-------FWLNLKNCNS------------PETVLEMLQ 203
Query: 438 RLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGH 497
+L Q P T + NI ++ + Q L+ L + +
Sbjct: 204 KL------------LYQIDPNWTSRSDHSSNIKLRIHSI------QAELRRLLKSKPYEN 245
Query: 498 DLLEFARDSVVLYLDD-EDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRR 556
LL V L + ++ L C L+ F V+ A+ ++ +
Sbjct: 246 CLL------V---LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 557 -LIEELVEKLLIAAVADADVT-----------VRHSIFSSLYGNRGFD--DFLAQADC-- 600
L + V+ LL D R SI + + G D +C
Sbjct: 297 TLTPDEVKSLL-LKYLDCRPQDLPREVLTTNPRRLSIIAESIRD-GLATWDNWKHVNCDK 354
Query: 601 ----LSAIFAALNDEDFDVREY--AISVAGRLSEKNPAYVLPAL-----RRHLIQLLTYL 649
+ + L ++ R+ +SV S P +L + + ++ ++ L
Sbjct: 355 LTTIIESSLNVLEPAEY--RKMFDRLSVF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 650 EQSSADNKCREESA-KLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGV 708
+ S K +ES + + +L +H+++V ++++ I +
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKL--ENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 709 LVTVGDLARVGGFGMRQYI-------------SELMPLIVEALLD-----------GAAV 744
D QY E M L LD A
Sbjct: 470 -----D----------QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 745 TKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKML---NGELVWSTRREVLKVLGIM 801
++TL Q+ Y+ +Y +L+ +L L L+ S ++L+ + +M
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR-IALM 573
Query: 802 ---GALDPHAHKRNQQ 814
A+ AHK+ Q+
Sbjct: 574 AEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 3e-09
Identities = 70/513 (13%), Positives = 140/513 (27%), Gaps = 178/513 (34%)
Query: 22 SLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESN 81
S + + +L L +P +R + + + LL+S
Sbjct: 194 SPETVLEMLQKLLYQIDP------------NWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 82 DAAENLGALRAIDELI--DVALGENASKVSKFSNYMRTVFEVKRDREIL-VLASKVLGH- 137
L L+ +V +NA + F+ + + R +++ L++ H
Sbjct: 242 PYENCL--------LVLLNV---QNAKAWNAFNLSCKILL-TTRFKQVTDFLSAATTTHI 289
Query: 138 -LARAGGAMTADEVEFQVKMALDWLRGDRVEYRR-------FAAVLILKEMAENASTVFN 189
L +T DEV+ + L +L + R +I + + + +T
Sbjct: 290 SLDHHSMTLTPDEVK---SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT--- 343
Query: 190 VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLG 249
W + ++ + + L V+E E R +
Sbjct: 344 ----------WDNWKHVNC---DKLTTIIESSLNVLEPAEYR----KMFDRLSVFPPS-- 384
Query: 250 RNAPVHSIHGSLLAV--GELLRNTGEFMMS---RYREVAE-----------IVLRYLEHR 293
H I LL++ +++++ +++ +Y V + I L
Sbjct: 385 ----AH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 294 DRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALD 353
+ L H V +Y IP DS + LD
Sbjct: 440 ENEYAL----------H---RSIVDHY------------NIPKTFDSD----DLIPPYLD 470
Query: 354 GELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMF---- 409
+ ++ HL+ P R + V LD F
Sbjct: 471 QYFYSHIG---HHLKNIEHPERMT-------------------LFRMV--FLDFRFLEQK 506
Query: 410 ----------SAGLSTTLVDA---LEQITVSIPSLLPTIQDRLL-DCISFVLSKSHYSQA 455
S + TL I + P +RL+ + F+
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY-----ERLVNAILDFLP-------- 553
Query: 456 RPAATPIRGNVMNIPQQVSDLNGSAPVQLALQT 488
+ I ++ +++AL
Sbjct: 554 KIEENLICSKYTDL------------LRIALMA 574
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 5e-08
Identities = 90/653 (13%), Positives = 167/653 (25%), Gaps = 215/653 (32%)
Query: 112 SNYMRTVFEVKRDREILVLASKV------LGHLARAGGAMTADEVEFQVKMALDWLRGDR 165
+ +++ + I++ V L M VE +++ +L
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM-SP 97
Query: 166 VEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAV-RERAVEALRACLRV 224
++ + ++ + E ++N F V R + LR L
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYND-NQVF----------AKYNVSRLQPYLKLRQALL- 145
Query: 225 IEKRETRWRVQWYYRMF---------EATQD--------------GLGRNAPVHSIHGSL 261
E R + + + + L +S L
Sbjct: 146 -ELRPAKNVL--IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN---CNSPETVL 199
Query: 262 LAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPR-------------I 308
+ +LL SR + I LR + L RL +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 309 AHF------L---RDRFVTNYL------KICMNHILTVLRIPAERDSGFIALGEMAGALD 353
F L R + VT++L I ++H L P E
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-PDE------VK-------- 304
Query: 354 GELF-HYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAG 412
L YL L PR N P ++ G
Sbjct: 305 -SLLLKYLDCRPQDL-----PRE--------VLTTN----------PRRLSIIAESIRDG 340
Query: 413 LST------TLVDALEQ-ITVSIPSLLPT-IQDRLLDCISFVLSKSHYSQARPAATPIRG 464
L+T D L I S+ L P + F
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-----------------PP 383
Query: 465 NVMNIPQQV-----SDLNGSAP----VQLALQTLARFNFKG-----HDL-LEF---ARDS 506
+ +IP + D+ S +L +L K + LE +
Sbjct: 384 SA-HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 507 VVLY--LDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIE-ELVE 563
L+ + D + L+ ++ G L E E
Sbjct: 443 YALHRSIVDHYNIPKT---FDSDDLIPPYLDQYFYSHIG-----------HHLKNIEHPE 488
Query: 564 KLLIAAVADADVTVRHSIFSSLYGNRGFD-DFLAQ---ADCLS-AIFAALNDEDFDVREY 618
++ ++F ++ D FL Q D + ++ + ++ Y
Sbjct: 489 RM--------------TLFRMVF----LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 619 AISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIR 671
+ + +P Y R + +L +L + + C + + L+R
Sbjct: 531 ----KPYICDNDPKY-----ERLVNAILDFLPKIEENLICSKYT-----DLLR 569
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 9e-08
Identities = 89/625 (14%), Positives = 179/625 (28%), Gaps = 185/625 (29%)
Query: 1071 HHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIF-IPSIHKLLLKHRLRHKEFEEI-- 1127
HH +D + E + D L A ++F + + K L +E + I
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD----MPKSILSKEEIDHIIM 56
Query: 1128 ----EGRLRRREPLIL--GSTAAQQL---SRRVPVEVISDPLNDVDSDP------YEDGT 1172
R +L Q+ R+ + + P+ P Y +
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 1173 DAQKQLRGHQASQRSTKEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAA 1232
D R + +Q K ++S + P LR L +L+P + +
Sbjct: 117 D-----RLYNDNQVFAK-------YNVS----RLQPYLKLRQA--LLELRP--AKNVLID 156
Query: 1233 GFVSC---WSQLNATSQKHLVQSLE-----MAFSSPNIPPEILATLLNLAEFMEHDEKPL 1284
G + W L+ + ++ + + N P +L L L
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL----------- 205
Query: 1285 PIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQL--HQHE 1342
+RS+ + + + L +E
Sbjct: 206 -------------LYQIDPNWT--------SRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 1343 AAVGILTYAQKELDVQLKESWYEKLQRWDDAL------------KAYTNKASQASNPHIV 1390
+ +L +VQ ++W +A K T+ S A+ HI
Sbjct: 245 NCLLVLL------NVQNAKAW--------NAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 1391 LE---ATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMA 1447
L+ TL + L ++ L+ ++ P L P + +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKY--LDCRPQD-----LPREVLTTNPRRLSIIAES-----IR 338
Query: 1448 EYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQ 1507
+ ++ D ++ V + ++ES + V +
Sbjct: 339 DGLATWD------------------------NWKHVNCDKLTTIIESS-------LNVLE 367
Query: 1508 LSELEEVIDYCT-LPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPT 1566
+E ++ D + P + ++I W + K +V V L +L
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLI---WFD---VIKSDVMVVVNKLHKYSL----- 416
Query: 1567 EDVETWLK---------FASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQV-- 1615
VE K + L K ++V Y+ + ++ PP +
Sbjct: 417 --VEKQPKESTISIPSIYLELKVKLENEYALHRSIVD--HYNIPKTFDS-DDLIPPYLDQ 471
Query: 1616 -MYAYLKYQWSLGEDLKRKEAFARL 1639
Y+++ + E +R F +
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMV 496
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 7e-04
Identities = 50/379 (13%), Positives = 117/379 (30%), Gaps = 100/379 (26%)
Query: 1510 ELEEVIDYC---TLPVGNPVAEGRRAIIRNMWTERIQGTKRNV----EVWQALLAVRALV 1562
E E Y L V A + N + +Q +++ E+ ++
Sbjct: 10 ETGE-HQYQYKDILSVFED------AFVDNFDCKDVQDMPKSILSKEEI-------DHII 55
Query: 1563 LPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPE--TSHENVRYHGPPQVMYAYL 1620
+ T F +L K + Q + ++L+ + + S P + Y+
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQK--FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 1621 KYQWSLGED--------LKRKEAFARLQTLAMELSSCP--VIQSAAS---TSLTTATSTN 1667
+ + L D + R + + +L+ +EL +I T + +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 1668 VPLIAR----VY-LKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722
+ + ++ L L + E++ E++ L
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNS-------PETVLEML-------------------QKLLY 207
Query: 1723 TAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLW------ 1776
+ ++T R S + +H++ + +K ++ L +L +
Sbjct: 208 Q-IDPNWTSRSDHSSNIKLRIHSIQAELRRLLK---SKPYENCL-LVLL--NVQNAKAWN 260
Query: 1777 -FNHGA-----TEEVQIALQKGFA---HVNINTWLVVLPQIIARIHSNNRAVRELIQSLL 1827
FN T Q+ A H++++ + L +++ L++ L
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL------TPDEVKSL--LLKYLD 312
Query: 1828 VRIGQSHPQAL-MYPLLVA 1845
R + L P ++
Sbjct: 313 CRPQDLPREVLTTNPRRLS 331
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 4e-07
Identities = 31/233 (13%), Positives = 71/233 (30%), Gaps = 27/233 (11%)
Query: 894 VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFS 953
V L K+ D + + L+ L L++ + L S + ++ +
Sbjct: 10 VDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITK-- 67
Query: 954 LPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILH 1013
+N + + L L F + +P ++ + V+ L
Sbjct: 68 --DSNVVLVAM-AGKCLALLAKGLAKRFSNYASACVPSLLEKFKE-----KKPNVVTALR 119
Query: 1014 TLEVFGGTLDEHMH-----LLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTG---- 1064
+D +++ + ++ + R + R Q T
Sbjct: 120 E------AIDAIYASTSLEAQQESIVESLS-NKNPSVKSETALFIARALTRTQPTALNKK 172
Query: 1065 HISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGED-FTIFIPSIHKLLLK 1116
+ L L L+ + +R + +AL L +G+ T + + L +
Sbjct: 173 LLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMA 225
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 28/194 (14%), Positives = 66/194 (34%), Gaps = 19/194 (9%)
Query: 170 RFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL-RDPTLAVRERAVEALRACLRVIEKR 228
R ++ +L+++ + + N V A+ + +D + + A + L + + KR
Sbjct: 32 RKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR 91
Query: 229 ETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR--EVAEIV 286
+ + + E ++ V LR + + + E +
Sbjct: 92 FSNYASACVPSLLEKFKE-------------KKPNVVTALREAIDAIYASTSLEAQQESI 138
Query: 287 LRYLEHRDRLVRLSITSLLPR-IAHFLRDRFVTNYLKICMNHILTVL--RIPAERDSGFI 343
+ L +++ V+ + R + LK+ ++ L P RDS
Sbjct: 139 VESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAE 198
Query: 344 ALGEMAGALDGELF 357
ALG + + +
Sbjct: 199 ALGTLIKLMGDKAV 212
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 9e-05
Identities = 29/183 (15%), Positives = 53/183 (28%), Gaps = 10/183 (5%)
Query: 608 LNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLG 667
L +R A + G S+ A L ++ L L A + R ++ +
Sbjct: 91 LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAIS 150
Query: 668 CLIRNCERLIRP-YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQY 726
CL+R E + L+ R ++ + + +L
Sbjct: 151 CLVREQEAGLLQFLRLDGFSVLM-RAMQ----QQVQKLKVKSAFLLQNLLVGHPEHKGTL 205
Query: 727 ISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGY----VITPYNEYPQLLGLLLKML 782
S M + AL+ E + L +V P +LL ++L
Sbjct: 206 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL 265
Query: 783 NGE 785
Sbjct: 266 QQH 268
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1880 | |||
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 100.0 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 100.0 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 100.0 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 100.0 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 100.0 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 100.0 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 100.0 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.98 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.92 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.91 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 99.77 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.75 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.71 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 99.7 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.68 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.65 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.61 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.61 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 99.58 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 99.5 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 99.43 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.41 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.39 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.38 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.35 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.33 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.33 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.32 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 99.32 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.3 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.28 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.27 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 99.27 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.26 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 99.26 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.25 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.24 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.23 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.21 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.21 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.15 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.13 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.09 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 99.07 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.03 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.0 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 98.99 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.98 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 98.95 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 98.93 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.92 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 98.91 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 98.9 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 98.8 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.79 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.71 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 98.69 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.69 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.55 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.52 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.5 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.48 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.46 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.43 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.43 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 98.41 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.41 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 98.39 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 98.28 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.26 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 98.23 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.22 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 98.21 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.2 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 98.18 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 98.17 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 98.14 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 98.06 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 98.03 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.99 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.98 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.95 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 97.92 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 97.9 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 97.88 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 97.86 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 97.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 97.83 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 97.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.77 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 97.69 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 97.61 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 97.59 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 97.56 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 97.51 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 97.48 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 97.48 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 97.48 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 97.47 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 97.46 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 97.45 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 97.44 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 97.35 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 97.33 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 97.3 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 97.24 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 97.21 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.11 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 96.97 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 96.94 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 96.88 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 96.84 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 96.57 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 96.53 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 96.38 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 96.33 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 96.29 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 96.28 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 96.24 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 96.22 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 96.16 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 96.15 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 96.15 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 96.13 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 95.93 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 95.85 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 95.7 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.68 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 95.68 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 95.65 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 95.62 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 95.6 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 95.54 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 95.53 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 95.47 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 95.46 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 95.32 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 95.3 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 95.29 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 95.23 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 95.23 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 95.22 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 95.15 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 95.03 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 95.0 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 94.99 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 94.93 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 94.84 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 94.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 94.66 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 94.65 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 94.64 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 94.58 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 94.5 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 94.46 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 94.45 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 94.43 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 94.37 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 94.24 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 94.14 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 94.11 | |
| 4atg_A | 196 | TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton | 93.96 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 93.93 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 93.88 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 93.85 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 93.8 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 93.64 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 93.57 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 93.5 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 93.44 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 93.41 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 93.32 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 93.26 | |
| 4atg_A | 196 | TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton | 92.83 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 92.77 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 92.7 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 92.64 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 92.55 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 92.39 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 92.29 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 92.01 | |
| 1vsy_4 | 799 | Proteasome activator BLM10; 20S proteasome BLM10, | 91.76 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 91.72 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 91.7 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 91.57 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 91.52 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 91.37 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 91.37 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 91.29 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 91.28 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 91.25 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 91.2 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 91.01 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 90.96 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 90.77 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 90.76 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 90.72 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 90.46 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 90.39 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 90.32 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 90.28 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 90.26 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 90.26 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 90.12 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 90.06 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 90.02 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 89.97 | |
| 1w9c_A | 321 | CRM1 protein, exportin 1; nuclear protein, nuclear | 89.92 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 89.87 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 89.87 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 89.76 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 89.46 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 89.46 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 89.0 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 88.98 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 88.86 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 88.76 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 88.73 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 88.72 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 88.71 | |
| 3fga_B | 403 | Serine/threonine-protein phosphatase 2A 56 kDa RE | 87.97 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 87.85 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 87.85 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 87.66 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 87.65 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 87.6 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 87.43 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 87.43 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 87.37 | |
| 1vsy_4 | 799 | Proteasome activator BLM10; 20S proteasome BLM10, | 87.28 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 87.17 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 87.09 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 86.98 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 86.84 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 86.53 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 86.22 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 86.2 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 86.06 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 85.95 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 85.91 | |
| 3fga_B | 403 | Serine/threonine-protein phosphatase 2A 56 kDa RE | 85.85 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 85.19 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 83.77 | |
| 2b6c_A | 220 | Hypothetical protein EF3068; structural genomis, D | 83.64 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 83.6 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 83.58 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 83.23 | |
| 1w9c_A | 321 | CRM1 protein, exportin 1; nuclear protein, nuclear | 83.22 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 82.93 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 82.86 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 82.83 | |
| 2npp_B | 449 | PP2A, B subunit, serine/threonine-protein phosphat | 82.78 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 82.6 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 82.32 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 82.27 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 81.99 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 81.69 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 81.54 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 81.17 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 81.02 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 80.53 | |
| 3jxy_A | 232 | Alkylpurine DNA glycosylase ALKD; heat repeat, DNA | 80.38 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 80.38 |
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=393.85 Aligned_cols=933 Identities=13% Similarity=0.138 Sum_probs=598.5
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhC-CCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccch
Q 000194 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAG-GAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFN 189 (1880)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~-g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~ 189 (1880)
+...|.++. +.|.+++..|...+....... ....++.....++.++++|. +.++..|.+|+.+++.++++++.
T Consensus 8 l~~lL~~l~--s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~--- 81 (1230)
T 1u6g_C 8 ISNLLEKMT--SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKE--- 81 (1230)
T ss_dssp HHHHHHHTT--CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCH---
T ss_pred HHHHHHhcC--CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCH---
Confidence 445566654 568999999998888765542 22333456677888889986 57788999999999999998876
Q ss_pred hchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhc--hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q 000194 190 VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE--TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGEL 267 (1880)
Q Consensus 190 ~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~--~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~l 267 (1880)
++++.+++.++.++.|+++.||.+|+.+++.+...+.... ......+.+.++|.+..++.+..+++++++|+.+++.+
T Consensus 82 ~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 82 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999887655321 11344577889999999998533588999999999999
Q ss_pred HHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC---CCCcchHHHH
Q 000194 268 LRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI---PAERDSGFIA 344 (1880)
Q Consensus 268 l~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~---~~~r~~a~~a 344 (1880)
++..++.+.++++++++.++..+.+.++.||..++.+++.++...++.| ++.+|+.++..|.+ ...|..++.+
T Consensus 162 ~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~----~~~~l~~l~~~L~~~~~~~~r~~a~~~ 237 (1230)
T 1u6g_C 162 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKNDSMSTTRTYIQC 237 (1230)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHH
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 9877777888999999999999999999999999999999998887665 34556666666643 2468899999
Q ss_pred HHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC-CCHHHH-H-H-
Q 000194 345 LGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAG-LSTTLV-D-A- 420 (1880)
Q Consensus 345 lg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~-ls~~l~-~-~- 420 (1880)
+|.++..+|+.+.||++.+++.+...+.+.+...+..++.+++.+++.+|+.+.||++.+++.++..- .++... + .
T Consensus 238 l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~ 317 (1230)
T 1u6g_C 238 IAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDED 317 (1230)
T ss_dssp HHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccc
Confidence 99999999999999999999999999987666667789999999999999999999999999998642 111110 0 0
Q ss_pred -----HH------HH---HHhC---CCChHHHHHHHHHHHHHHhc--CCCCCCCCCCCCCCCCCccCCCccccccCCchh
Q 000194 421 -----LE------QI---TVSI---PSLLPTIQDRLLDCISFVLS--KSHYSQARPAATPIRGNVMNIPQQVSDLNGSAP 481 (1880)
Q Consensus 421 -----l~------~i---~~~~---p~l~~~i~~~ll~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1880)
.. +. .+.+ ......+.....+.+..+.. +..+.+.-+. . .+.... ...+. +...
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~--l-~~~l~~---~l~d~-~~~V 390 (1230)
T 1u6g_C 318 EDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKT--V-SPALIS---RFKER-EENV 390 (1230)
T ss_dssp ---------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTT--T-HHHHHS---TTSCS-SSHH
T ss_pred cccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHH--H-HHHHHH---HcCCC-chHH
Confidence 00 00 0000 00011222222223322211 1000000000 0 000000 00011 1223
Q ss_pred HHHHHHhhcccc--cC----------------C--Cc---chhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCcc
Q 000194 482 VQLALQTLARFN--FK----------------G--HD---LLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVS 538 (1880)
Q Consensus 482 ~~~Al~~L~~~~--~~----------------~--~~---l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~ 538 (1880)
...|+++++.+- .. | .. +.+.+-..+.+.+.++++.+|.++...++.++......
T Consensus 391 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~-- 468 (1230)
T 1u6g_C 391 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGA-- 468 (1230)
T ss_dssp HHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTT--
T ss_pred HHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhh--
Confidence 344555555430 00 0 00 11222233445588889999988877777766432210
Q ss_pred ccccCCccccccccchhHHHHHHHHHHHHHHhcCCCh--hHHHHHHHhccC------CCCcchhhccHhhHHHHHHHhCC
Q 000194 539 FTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADV--TVRHSIFSSLYG------NRGFDDFLAQADCLSAIFAALND 610 (1880)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~--~vR~~~l~~l~~------~~~fd~~L~~~~~l~~L~~~l~D 610 (1880)
..+.+..+++.++.. +.|+.+ .+|..++..+.. ...|.+|+ +.+++.++.+++|
T Consensus 469 ---------------l~~~l~~ll~~l~~~-L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l--~~llp~L~~~l~d 530 (1230)
T 1u6g_C 469 ---------------LTQHIPVLVPGIIFS-LNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV--QALVPPVVACVGD 530 (1230)
T ss_dssp ---------------TGGGHHHHHHHHHHH-TTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH--TTTHHHHHHHHTC
T ss_pred ---------------hHHHHHHHHHHHHHH-HcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHH--HHHHHHHHHHHcc
Confidence 123356666666654 567654 888887776631 12244444 3578999999999
Q ss_pred CCHhHHHHHHHHHHhhhcCCc-------ccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHH
Q 000194 611 EDFDVREYAISVAGRLSEKNP-------AYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAP 683 (1880)
Q Consensus 611 ~~~~VR~~a~~~l~~l~~~~p-------~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~ 683 (1880)
.++.||..|+.+++.+++..+ ..+.|++..++..++..+...+.+...|+.|+.++|.++...++.+.+|++.
T Consensus 531 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~ 610 (1230)
T 1u6g_C 531 PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPN 610 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHH
Confidence 999999999999998885432 2567888887777777775332677899999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhc-CCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcC
Q 000194 684 IHKALVARLLEGTGINANNGIISGVLVTVGDLARVG-GFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTG 762 (1880)
Q Consensus 684 il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~-g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~ 762 (1880)
+++.+.+.+.++ ..+..++.+++.++... +.++.+|+..++|.+...+.+. +...|.+|+.+|+.++...+
T Consensus 611 ~l~~L~~~l~~e-------~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~-~~~~r~~a~~al~~l~~~~~ 682 (1230)
T 1u6g_C 611 TLQIFLERLKNE-------ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKN-QRALKLGTLSALDILIKNYS 682 (1230)
T ss_dssp HHHHHHHHTTSS-------SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccc-------hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhccc
Confidence 999999988753 35667788888887543 3468899999999999999876 57799999999999999887
Q ss_pred cccccCCcchHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcccCccch-----hhccc----cCCCc--ccc-------
Q 000194 763 YVITPYNEYPQLLGLLLKMLN--GELVWSTRREVLKVLGIMGALDPHAH-----KRNQQ----LSGSH--GEV------- 822 (1880)
Q Consensus 763 ~~i~p~~~~p~ll~~Ll~~L~--~~~~~~vr~~~l~~lg~lgaldp~~~-----~~~~~----~~~~~--~~~------- 822 (1880)
..+. .+.+.+.+...+. ++.+..++..++.+++.+....|-.. ..... +.... +..
T Consensus 683 ~~~~----~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~ 758 (1230)
T 1u6g_C 683 DSLT----AAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDF 758 (1230)
T ss_dssp TTCC----HHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred ccCC----HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHH
Confidence 5441 1234444433222 24577888888988887743322110 00000 00000 000
Q ss_pred cccCCCCCCCCCCCcccccccCCC-CCCCc-----ccc--hHHHHHHHHHH---------------hcCC-ChhhhHHHH
Q 000194 823 TRAASDSGQHIQPMDEFPMDLWPS-FATSE-----DYY--STVAINSLMRI---------------LRDP-SLASYHQKV 878 (1880)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-----~~~--~~~vi~~Ll~~---------------L~d~-s~~~~~~~~ 878 (1880)
.+............+.+...++.. ..+.. +-+ ....+..++.. ++++ .....+..+
T Consensus 759 ~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (1230)
T 1u6g_C 759 FQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLA 838 (1230)
T ss_dssp HHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHH
T ss_pred HHHHHhcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHH
Confidence 000000000000000000000000 00000 000 00111222111 1111 011111122
Q ss_pred HHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCccc
Q 000194 879 VGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATN 958 (1880)
Q Consensus 879 ~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~ 958 (1880)
+.++..+-...+ ..+ .+++.+.++..+.+.++.+|..+...+|.++ ..+...|+|.++..+..- . +
T Consensus 839 l~~l~~~g~~~~--~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~---~~~~~~~lp~ll~~l~~~----~--~-- 904 (1230)
T 1u6g_C 839 LLSLGEVGHHID--LSG-QLELKSVILEAFSSPSEEVKSAASYALGSIS---VGNLPEYLPFVLQEITSQ----P--K-- 904 (1230)
T ss_dssp HHHHHHHHHHSC--CCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHH---HHTHHHHHHHHHHHHHSC----G--G--
T ss_pred HHHHHHhcccCC--Ccc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHh---ccCHHHHHHHHHHHHhcc----c--h--
Confidence 222333322211 122 4677788888888777788988888888876 346667777777766531 1 1
Q ss_pred ccccchhHHHHHHHHHHHh-hhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhh
Q 000194 959 RTYRGLPVLHLVQQLCLAL-NDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLF 1037 (1880)
Q Consensus 959 ~~~~~~~~l~~i~~l~~~l-~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~l 1037 (1880)
.+...+..+..+.... ++.+.||.+.+++.+++.+++.+. .-+..+..+++.+.... -..++|.+...+
T Consensus 905 ---~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~-~~r~~~a~~lg~l~~~~------~~~l~p~l~~~l 974 (1230)
T 1u6g_C 905 ---RQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEE-GTRNVVAECLGKLTLID------PETLLPRLKGYL 974 (1230)
T ss_dssp ---GHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSST-THHHHHHHHHHHHHHSS------GGGTHHHHTTTS
T ss_pred ---hhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcch-hhHHHHHHHHhhhhccC------hHHHHHHHHHHh
Confidence 1224455555544333 567999999999999998875331 11334444444443321 245788888877
Q ss_pred cCCCcHHHHHHHHHHHHhhccc--ccccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhccccccchhHHHHHHH
Q 000194 1038 KVDAPVDIRRAAIETLTRLIPR--VQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLL 1115 (1880)
Q Consensus 1038 ~~~~~~~vr~~ai~~l~~l~~~--~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~fip~i~~~l~ 1115 (1880)
..+ ...+|..++.+++.+... ..+.+|+..++++++..+++++.++|.+++.+|+.++.+.|..+..+++.+.+.+.
T Consensus 975 ~~~-~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~ 1053 (1230)
T 1u6g_C 975 ISG-SSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLY 1053 (1230)
T ss_dssp SSS-CHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH
T ss_pred cCC-CHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHH
Confidence 654 456899999998888654 23456788888888899998889999999999999999988888888888888876
Q ss_pred hC
Q 000194 1116 KH 1117 (1880)
Q Consensus 1116 ~~ 1117 (1880)
..
T Consensus 1054 ~~ 1055 (1230)
T 1u6g_C 1054 NE 1055 (1230)
T ss_dssp HT
T ss_pred HH
Confidence 63
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=379.71 Aligned_cols=758 Identities=13% Similarity=0.145 Sum_probs=534.8
Q ss_pred cchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHH
Q 000194 166 VEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQ 245 (1880)
Q Consensus 166 ~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~ 245 (1880)
+...|..|-..|.++.. . |.....+-.|+..+.+.++.||..|+-.|+..+. .+........-..+-+.+.
T Consensus 26 d~~~r~~Ae~~L~~~~~-~-----p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~---~~w~~~~~~~~~~ik~~ll 96 (852)
T 4fdd_A 26 DTTIQRTVQQKLEQLNQ-Y-----PDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVK---AHFQNFPNGVTDFIKSECL 96 (852)
T ss_dssp CHHHHHHHHHHHHHHTT-S-----HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTT---TSGGGCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-C-----CCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH---HccCCCCHHHHHHHHHHHH
Confidence 45577777777776532 2 2223334444455578889999999998887653 1221122223345556666
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHH----HH
Q 000194 246 DGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTN----YL 321 (1880)
Q Consensus 246 ~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~----yl 321 (1880)
.++.+++ ..+|+.+..+++.++...+. ...+++++.++..+++.++.+|+.++.+++.++...+..|... ++
T Consensus 97 ~~l~~~~-~~vr~~~a~~i~~ia~~~~~---~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~ 172 (852)
T 4fdd_A 97 NNIGDSS-PLIRATVGILITTIASKGEL---QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPL 172 (852)
T ss_dssp TTTTCSS-HHHHHHHHHHHHHHHHHTTT---TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCH
T ss_pred HHHcCCC-HHHHHHHHHHHHHHHHhcCc---cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchH
Confidence 7777764 67899999999999875422 2234566677777788899999999999999998776665432 36
Q ss_pred HHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchH
Q 000194 322 KICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEP 399 (1880)
Q Consensus 322 ~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~ 399 (1880)
+.+++.++..++++. .|..|+.+++.+....+..+.++++.+++.+...+.+.+.+.+..++.|++.+++..++.+.|
T Consensus 173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 778888888887554 478999999988776666677888889998888887655555678999999999987777778
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCc
Q 000194 400 HVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGS 479 (1880)
Q Consensus 400 ~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1880)
|++.+++.++..
T Consensus 253 ~l~~l~~~l~~~-------------------------------------------------------------------- 264 (852)
T 4fdd_A 253 HMHNIVEYMLQR-------------------------------------------------------------------- 264 (852)
T ss_dssp GHHHHHHHHHHH--------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Confidence 887766654421
Q ss_pred hhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHH
Q 000194 480 APVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIE 559 (1880)
Q Consensus 480 ~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (1880)
+.++++.||..|...+..+..... + .......+.
T Consensus 265 -------------------------------~~~~~~~vr~~a~e~l~~l~~~~~--~-------------~~~~~~~~~ 298 (852)
T 4fdd_A 265 -------------------------------TQDQDENVALEACEFWLTLAEQPI--C-------------KDVLVRHLP 298 (852)
T ss_dssp -------------------------------HTCSSHHHHHHHHHHHHHHTTSTT--H-------------HHHHTTTHH
T ss_pred -------------------------------ccCCcHHHHHHHHHHHHHHhcchh--H-------------HHHHHHHHH
Confidence 011122333333322222111000 0 000011233
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCC--CCHhHHHHHHHHHHhhhcCCcccccHH
Q 000194 560 ELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALND--EDFDVREYAISVAGRLSEKNPAYVLPA 637 (1880)
Q Consensus 560 ~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D--~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1880)
.+++.++... ..++.+.. . +..+...|.. + .| .+..||..|..+++.++...|..+.|.
T Consensus 299 ~l~p~ll~~l-~~~e~d~~--~---~~~d~~ed~~----~---------dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~ 359 (852)
T 4fdd_A 299 KLIPVLVNGM-KYSDIDII--L---LKGDVEGGSG----G---------DDTISDWNLRKCSAAALDVLANVYRDELLPH 359 (852)
T ss_dssp HHHHHHHHHT-SCCHHHHH--H---HHC-------------------------CCCCHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHHHHHHc-CCcHhHHH--H---hcCCcccccc----c---------ccccccchHHHHHHHHHHHHHHhccHHHHHH
Confidence 3343333321 11211111 0 0000000000 0 01 456799999999999999888776665
Q ss_pred HHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHH
Q 000194 638 LRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLAR 717 (1880)
Q Consensus 638 l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~ 717 (1880)
+.+.+ ..+..+ ++++.|+.|+.+||.+++.+++.+.||++.+++.+++.+.++ ++.|+.+++.++|.++.
T Consensus 360 l~~~l----~~~l~~-~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~-----~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 360 ILPLL----KELLFH-HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK-----KALVRSITCWTLSRYAH 429 (852)
T ss_dssp HHHHH----HHHHTC-SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS-----SHHHHHHHHHHHHHTHH
T ss_pred HHHHH----HHHhcC-CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHH
Confidence 54443 333344 579999999999999999998888899999999999999875 88999999999999998
Q ss_pred hcC-CchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHH
Q 000194 718 VGG-FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLK 796 (1880)
Q Consensus 718 ~~g-~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~ 796 (1880)
..+ ....+|+..++|.+++.+.|. +..+|..|+.+|+.+++..+..+.||. |.+++.|+..++... .+....++.
T Consensus 430 ~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~~~-~~~~~~~~~ 505 (852)
T 4fdd_A 430 WVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQ-HKNLLILYD 505 (852)
T ss_dssp HHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCC-HHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHHhC-hHHHHHHHH
Confidence 655 457889999999999999886 578999999999999999998888885 899999999997553 344445566
Q ss_pred HHHHHccc-CccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHH---HhcCCChh
Q 000194 797 VLGIMGAL-DPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMR---ILRDPSLA 872 (1880)
Q Consensus 797 ~lg~lgal-dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~---~L~d~s~~ 872 (1880)
++|.+... .+. ....+|+ ..+++.|++ .+.|++..
T Consensus 506 ai~~l~~~~~~~----------------------------------------~~~~~~~-~~l~p~l~~~~~~l~d~~~~ 544 (852)
T 4fdd_A 506 AIGTLADSVGHH----------------------------------------LNKPEYI-QMLMPPLIQKWNMLKDEDKD 544 (852)
T ss_dssp HHHHHHHHHGGG----------------------------------------GCCHHHH-HHHHHHHHHHHHHSCTTCTT
T ss_pred HHHHHHHHhhhh----------------------------------------hccHHHH-HHHHHHHHHHHHhcccccHH
Confidence 66655310 000 0112344 566777774 55565433
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcC-----------------CcchhHHHHHHHHHHHHHHHHhHH
Q 000194 873 SYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTC-----------------DDYLKDYITWKLGTLVSIVRQHIR 935 (1880)
Q Consensus 873 ~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~-----------------~~~~~~~~~~~l~~lv~~~~~~i~ 935 (1880)
. ..+++++..++..+|..+.||++.+++.++..++++ +...+..++..++.++..+|.++.
T Consensus 545 -~-~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~ 622 (852)
T 4fdd_A 545 -L-FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE 622 (852)
T ss_dssp -H-HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGH
T ss_pred -H-HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHH
Confidence 3 378999999999999999999999999888877642 233667778999999999999999
Q ss_pred HhH--HHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHH
Q 000194 936 KYL--QELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILH 1013 (1880)
Q Consensus 936 ~y~--~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~ 1013 (1880)
+|+ +.+++.+.+.++... + .+++ .++.+++.++...+.+|.+|++.++|.+++.+++.+.. -+..+..+++
T Consensus 623 ~~~~~~~~~~~l~~~l~~~~-~----~vr~-~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~-v~~~a~~alg 695 (852)
T 4fdd_A 623 QLVARSNILTLMYQCMQDKM-P----EVRQ-SSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFIS-VCNNATWAIG 695 (852)
T ss_dssp HHHHTCCHHHHHHHHTTCSS-H----HHHH-HHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHH-HHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHhCCCC-h----hHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchH-HHHHHHHHHH
Confidence 998 899999999886543 1 1233 78899999999999999999999999999999543211 1233333343
Q ss_pred HH-HHHhcchhhhhhhhHHHHHHhhcCC-CcHHHHHHHHHHHHhhcccc--cccchhHhHHHHHHHhhCC-CCHHHHHHH
Q 000194 1014 TL-EVFGGTLDEHMHLLLPALIRLFKVD-APVDIRRAAIETLTRLIPRV--QVTGHISSLVHHLKLVLDG-KNDELRKDA 1088 (1880)
Q Consensus 1014 ~l-~~~g~~~~~~~~~ilp~l~~~l~~~-~~~~vr~~ai~~l~~l~~~~--~~~~~~~~ii~~l~~~l~~-~~~~l~~~a 1088 (1880)
.+ ..+|..+.+|++.++|.++++++.. .+..+++.++.++|+|+... .+.||++.+++++++.|.. .+.+.|..+
T Consensus 696 ~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a 775 (852)
T 4fdd_A 696 EISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSA 775 (852)
T ss_dssp HHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHH
T ss_pred HHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHH
Confidence 33 4578889999999999999999753 57889999999999998862 3569999999999999974 567889999
Q ss_pred HHHHHHHHHHhccccccchhHHHHHHHhCCCCchhHHHHHHHHhc
Q 000194 1089 VDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRR 1133 (1880)
Q Consensus 1089 l~~L~~l~~~~g~~f~~fip~i~~~l~~~~~~~~~~~~~~~~~~~ 1133 (1880)
+..||.++.+-+......+..+...+.......++......++..
T Consensus 776 ~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 820 (852)
T 4fdd_A 776 FRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILH 820 (852)
T ss_dssp HHHHHHHHHHCGGGTGGGHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999988777777777777777755444555555555544
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=365.04 Aligned_cols=777 Identities=14% Similarity=0.107 Sum_probs=533.8
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHh-hhch
Q 000194 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRD--PTLAVRERAVEALRACLRVIE-KRET 230 (1880)
Q Consensus 154 ~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D--~~~~VR~aA~~al~~~~~~i~-~r~~ 230 (1880)
+..+++++.+... ..|..|...|+++... +.+.+++.++..+.+ +++.||..|+.+|+.++.... .++.
T Consensus 3 l~~~L~~~~s~d~-~~r~~A~~~L~~~~~~-------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~ 74 (876)
T 1qgr_A 3 LITILEKTVSPDR-LELEAAQKFLERAAVE-------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 74 (876)
T ss_dssp HHHHHHGGGCSCH-HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHHHhc-------ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHH
Confidence 4457777765444 4566666677876643 456788888888877 468999999999998763210 0111
Q ss_pred hhHHHHH-------HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcc--hhHHHHHH
Q 000194 231 RWRVQWY-------YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHR--DRLVRLSI 301 (1880)
Q Consensus 231 ~~~~~~~-------~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~--~~~Vr~~~ 301 (1880)
.....|. ..+-+.+..++.+++ ..+ ++++.+++.++...+ ...+.+++++.++..+++. ++.+|..+
T Consensus 75 ~~~~~w~~l~~~~~~~ik~~ll~~l~~~~-~~~-~~~~~~l~~i~~~~~--~~~~w~~ll~~l~~~l~~~~~~~~~r~~a 150 (876)
T 1qgr_A 75 QYQQRWLAIDANARREVKNYVLHTLGTET-YRP-SSASQCVAGIACAEI--PVNQWPELIPQLVANVTNPNSTEHMKEST 150 (876)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTTTCC-SSS-CHHHHHHHHHHHHHG--GGTCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHhCCCc-HHH-HHHHHHHHHHHHhhC--cccccHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 1122332 234445667777654 355 888889999887532 1234566777788888888 89999999
Q ss_pred HHHhHhHhhhC-hhhHHHHHHHHHHHHHHHhhcCC----CCcchHHHHHHHHHhhchhhhhhh--hhHHHHHHHHhhcCC
Q 000194 302 TSLLPRIAHFL-RDRFVTNYLKICMNHILTVLRIP----AERDSGFIALGEMAGALDGELFHY--LPTITSHLREAIAPR 374 (1880)
Q Consensus 302 ~~~i~~la~~~-~~~f~~~yl~~~~~~Ll~~L~~~----~~r~~a~~alg~la~~v~~~~~p~--l~~i~~~l~~~l~~~ 374 (1880)
+.+++.++... ++.| ..+++.+++.+...+.++ ..|..|+.+++.++..++..+... .+.+++.+.+.+.+.
T Consensus 151 l~~l~~l~~~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~ 229 (876)
T 1qgr_A 151 LEAIGYICQDIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP 229 (876)
T ss_dssp HHHHHHHHHHSCHHHH-GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhcCHhhH-HhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCC
Confidence 99999998754 4443 458899999999999765 247899999999988777654322 234777777776544
Q ss_pred CCCCCchHHHHHHHHHHHhCCCchHHHH-HHHHHHHhcC--CCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCC
Q 000194 375 RGKPSLEALACVGNIARAMGPVMEPHVR-GLLDIMFSAG--LSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSH 451 (1880)
Q Consensus 375 ~~~~~~~a~~~l~~la~~~g~~~~~~l~-~ll~~l~~~~--ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~ 451 (1880)
+.+.+..++.|++.++...++.+.||+. .+++.++... .++.
T Consensus 230 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----------------------------------- 274 (876)
T 1qgr_A 230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDE----------------------------------- 274 (876)
T ss_dssp SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHH-----------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchH-----------------------------------
Confidence 4344567999999999999888999998 8877765421 1111
Q ss_pred CCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhh
Q 000194 452 YSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVA 531 (1880)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~ 531 (1880)
....|++.+..+.- ...+. . .+ +++ + ... .
T Consensus 275 -----------------------------v~~~al~~l~~l~~-------~~~~~--~-~~--~~~----~---~~~--~ 304 (876)
T 1qgr_A 275 -----------------------------VALQGIEFWSNVCD-------EEMDL--A-IE--ASE----A---AEQ--G 304 (876)
T ss_dssp -----------------------------HHHHHHHHHHHHHH-------HHHHH--H-HH--HHH----H---HHH--S
T ss_pred -----------------------------HHHHHHHHHHHHHH-------HHHhH--h-hh--hcc----c---ccc--C
Confidence 12223333322200 00000 0 00 000 0 000 0
Q ss_pred ccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhc------CCChhHHHHHHHhccCC-CCcchhhccHhhHHHH
Q 000194 532 NSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVA------DADVTVRHSIFSSLYGN-RGFDDFLAQADCLSAI 604 (1880)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~------d~~~~vR~~~l~~l~~~-~~fd~~L~~~~~l~~L 604 (1880)
..+.. .........+..+++.++..... |.++.+|.++..+|..- ..+... .-+.+++.+
T Consensus 305 ~~~~~------------~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~l~~l 371 (876)
T 1qgr_A 305 RPPEH------------TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFI 371 (876)
T ss_dssp SCCSS------------CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHH
T ss_pred CCccc------------hhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh-hHHHHHHHH
Confidence 00000 00001122345555555554322 45688999887777410 001110 123567777
Q ss_pred HHHhCCCCHhHHHHHHHHHHhhhcCCc-ccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccc--ccCch
Q 000194 605 FAALNDEDFDVREYAISVAGRLSEKNP-AYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL--IRPYI 681 (1880)
Q Consensus 605 ~~~l~D~~~~VR~~a~~~l~~l~~~~p-~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~--~~py~ 681 (1880)
...++|+++.+|.+|+.++|.++...+ ..+.|++..++..++..+.+ +.+..|..|+++|+.+++..+.. ..+|+
T Consensus 372 ~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l 449 (876)
T 1qgr_A 372 KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD--PSVVVRDTAAWTVGRICELLPEAAINDVYL 449 (876)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHCGGGTSSTTTH
T ss_pred HHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhCchhcccHHHH
Confidence 788899999999999999999998765 44556666655555555544 57889999999999999988765 46999
Q ss_pred HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcC--------------CchhhhHHhHHHHHHHHHhcCC--chh
Q 000194 682 APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG--------------FGMRQYISELMPLIVEALLDGA--AVT 745 (1880)
Q Consensus 682 ~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g--------------~~~~~~~~~l~p~l~~~l~d~~--~~~ 745 (1880)
+.+++.++..+.+ .+.++..++.+++.++...+ ..+.||++.++|.+++.+.+.. +..
T Consensus 450 ~~~l~~l~~~l~~------~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~ 523 (876)
T 1qgr_A 450 APLLQCLIEGLSA------EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNN 523 (876)
T ss_dssp HHHHHHHHHHTTS------CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTT
T ss_pred HHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhh
Confidence 9999999999875 37788999999999988754 4589999999999999998642 346
Q ss_pred hHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcC----------CCC----HHHHHHHHHHHHHHcccCc-cchh
Q 000194 746 KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNG----------ELV----WSTRREVLKVLGIMGALDP-HAHK 810 (1880)
Q Consensus 746 ~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~----------~~~----~~vr~~~l~~lg~lgaldp-~~~~ 810 (1880)
.|..++.+++.++...|....||. +.+++.++..+.. +.+ +.+|..++.+++.+...-+ .
T Consensus 524 ~r~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~--- 598 (876)
T 1qgr_A 524 LRSSAYESLMEIVKNSAKDCYPAV--QKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQ--- 598 (876)
T ss_dssp HHHHHHHHHHHHHHTCCSTTHHHH--HHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHH---
T ss_pred HHHHHHHHHHHHHHHCchhhHHHH--HHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChh---
Confidence 888999999999999887555543 4666666666542 212 4567777777776642100 0
Q ss_pred hccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCCh-hhhHHHHHHHHHHHHHHh
Q 000194 811 RNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSL-ASYHQKVVGSLMFIFKSM 889 (1880)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~-~~~~~~~~~al~~i~~~~ 889 (1880)
++ ..|...+++.|++++++++- ...+..++.++..++...
T Consensus 599 -------------------------------~~--------~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~ 639 (876)
T 1qgr_A 599 -------------------------------DA--------LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL 639 (876)
T ss_dssp -------------------------------HH--------HTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------hh--------hHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHH
Confidence 00 01446788899999987641 245678999999999999
Q ss_pred CCCCCCCcchhhHHHHHHHhcC-CcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHH
Q 000194 890 GLGCVPYLPKVLPDLFHTVRTC-DDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLH 968 (1880)
Q Consensus 890 ~~~~~~~l~~iip~ll~~l~~~-~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~ 968 (1880)
|..+.||++.++|.++..+++. ++.+|..++..++.++..+++++.||++.+++.+.+.+...+.. +. ....++.
T Consensus 640 ~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~---~~-~~~~~~~ 715 (876)
T 1qgr_A 640 GGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVH---RS-VKPQILS 715 (876)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSC---GG-GHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCcccc---HH-hhHHHHH
Confidence 9999999999999999999987 67899999999999999999999999999999999999763211 11 2347899
Q ss_pred HHHHHHHHhhhhhhccchhhHHHHHHhcccccccCc-------hhhHHHHHHHHH----HHhc----------chhhhhh
Q 000194 969 LVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCND-------YTYVLDILHTLE----VFGG----------TLDEHMH 1027 (1880)
Q Consensus 969 ~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~-------~~~~~~il~~l~----~~g~----------~~~~~~~ 1027 (1880)
+++.++..+|++|.+|++.++|.+++.+.......+ ......++.++. .+|. .+.+|++
T Consensus 716 ~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 795 (876)
T 1qgr_A 716 VFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVE 795 (876)
T ss_dssp HHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHH
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHH
Confidence 999999999999999999999999998864210000 122333444443 3443 4566777
Q ss_pred hhHHHHHHhhcCCC-cHHHHHHHHHHHHhhcccc---cccch-hHhHHHHHHH-hhCCCCHHHHHHHHHHHHHHHH
Q 000194 1028 LLLPALIRLFKVDA-PVDIRRAAIETLTRLIPRV---QVTGH-ISSLVHHLKL-VLDGKNDELRKDAVDALCCLAH 1097 (1880)
Q Consensus 1028 ~ilp~l~~~l~~~~-~~~vr~~ai~~l~~l~~~~---~~~~~-~~~ii~~l~~-~l~~~~~~l~~~al~~L~~l~~ 1097 (1880)
.+++.+........ ...+|..|+.++|.++... .+.+| .+.+++++++ .++++++++|.+|..+++.+..
T Consensus 796 ~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 796 FILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHH
Confidence 77776666655433 7899999999999998864 45677 6788999998 9988899999999999998874
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-30 Score=362.08 Aligned_cols=758 Identities=13% Similarity=0.159 Sum_probs=532.2
Q ss_pred HHHHHHHhh-cccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCC-CcchhHHHHHHHHHHHHhh----
Q 000194 110 KFSNYMRTV-FEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGD-RVEYRRFAAVLILKEMAEN---- 183 (1880)
Q Consensus 110 ~~~~~L~~~-l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~-~~~~~R~aA~~~l~~la~~---- 183 (1880)
.+...|... + +.|.++++.|.+.|..+... ..+++.. .+++.+.++ .+...|+.|...|+.....
T Consensus 5 ~l~~~L~~~~~--s~d~~~r~~Ae~~L~~~~~~---~~~~~~~----~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~ 75 (861)
T 2bpt_A 5 EFAQLLENSIL--SPDQNIRLTSETQLKKLSND---NFLQFAG----LSSQVLIDENTKLEGRILAALTLKNELVSKDSV 75 (861)
T ss_dssp HHHHHHHHHHH--CSSHHHHHHHHHHHHHHHHH---CHHHHHH----HHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHH
T ss_pred HHHHHHHHccc--CcCHHHHHHHHHHHHHHHhh---CHHHHHH----HHHHHHhCCCCChHHHHHHHHHHHhhccCcChH
Confidence 455666676 6 35899999999999887552 1233433 344444432 4567888888888876422
Q ss_pred --------cCc-cchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCCh
Q 000194 184 --------AST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPV 254 (1880)
Q Consensus 184 --------~p~-~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~ 254 (1880)
.+. .=......|.+.++..|.++++.||..++.+++.+..... + ...| +.+++.+...+.++.+.
T Consensus 76 ~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~---p--~~~w-~~ll~~L~~~l~~~~~~ 149 (861)
T 2bpt_A 76 KTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIEL---P--HGAW-PELMKIMVDNTGAEQPE 149 (861)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG---G--GTCC-HHHHHHHHHHTSTTSCH
T ss_pred HHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhC---c--cccc-HHHHHHHHHHHhcCCCH
Confidence 111 1123455677888899999999999999999988765421 1 0123 56777777777765246
Q ss_pred hHHHHHHHHHHHHHHcchhh---hHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHhHhHhhhChhhHHH-HHHHHHHHHH
Q 000194 255 HSIHGSLLAVGELLRNTGEF---MMSRYREVAEIVLRYLEHR--DRLVRLSITSLLPRIAHFLRDRFVT-NYLKICMNHI 328 (1880)
Q Consensus 255 ~~~~~al~~l~~ll~~~~~~---~~~~~~~i~~~ll~~~~~~--~~~Vr~~~~~~i~~la~~~~~~f~~-~yl~~~~~~L 328 (1880)
..+++++.+++.+.+..+.. +.++...+++.+...+.+. ++.||.+++.++..+..+....+.. .+.+.+++.+
T Consensus 150 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l 229 (861)
T 2bpt_A 150 NVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVV 229 (861)
T ss_dssp HHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHH
Confidence 88999999999999843322 5677888888888888876 7899999999999887665544321 1224466666
Q ss_pred HHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhh-HHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHH
Q 000194 329 LTVLRIPA--ERDSGFIALGEMAGALDGELFHYLP-TITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLL 405 (1880)
Q Consensus 329 l~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~-~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll 405 (1880)
...+..+. .|..|+.+++.++...++.+.+|++ .+++.+...+.+...+.+..++.+|+.+++... +..
T Consensus 230 ~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~-----~~~--- 301 (861)
T 2bpt_A 230 CEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEI-----DIA--- 301 (861)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH-----HHH---
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH-----hhh---
Confidence 66665443 4789999999999998888889998 888888877765433333456666665554310 000
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHH
Q 000194 406 DIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLA 485 (1880)
Q Consensus 406 ~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 485 (1880)
.. .. . .
T Consensus 302 --~~---------------------------~~-----~---~------------------------------------- 307 (861)
T 2bpt_A 302 --YE---------------------------LA-----Q---F------------------------------------- 307 (861)
T ss_dssp --HH---------------------------HH-----H---C-------------------------------------
T ss_pred --hh---------------------------hh-----h---c-------------------------------------
Confidence 00 00 0 0
Q ss_pred HHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHH
Q 000194 486 LQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKL 565 (1880)
Q Consensus 486 l~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~L 565 (1880)
+.. +. . ..+ . ....+..+++.+
T Consensus 308 ----~~~---~~-------------~-~~~-~------------------------------------~~~~~~~il~~l 329 (861)
T 2bpt_A 308 ----PQS---PL-------------Q-SYN-F------------------------------------ALSSIKDVVPNL 329 (861)
T ss_dssp ----TTC---SC-------------C-CCC-H------------------------------------HHHHHHHHHHHH
T ss_pred ----cCC---ch-------------h-hHH-H------------------------------------HHHHHHHHHHHH
Confidence 000 00 0 000 0 001122223322
Q ss_pred HHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHH
Q 000194 566 LIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQL 645 (1880)
Q Consensus 566 l~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~ 645 (1880)
+.. +.+++ . +. .|+++.+|..+..+++.++...+..+.|.+.+.+.+
T Consensus 330 l~~-l~~~~--------------~--d~---------------~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~- 376 (861)
T 2bpt_A 330 LNL-LTRQN--------------E--DP---------------EDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQ- 376 (861)
T ss_dssp HHH-TTCCC--------------C--C----------------CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHH-
T ss_pred HHH-HHhcc--------------c--cc---------------ccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHH-
Confidence 221 11110 0 00 133457777788888777776665555544433322
Q ss_pred HHHHhcCCCChHhHHHHHHHHHHHHHhCc-ccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCch-
Q 000194 646 LTYLEQSSADNKCREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGM- 723 (1880)
Q Consensus 646 l~~l~~~~~~~~~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~- 723 (1880)
...+ .+++.|+.|+.+++.+++.++ ..+.+|++.+++.+++.+.++ ++.++..++.++|.++...+..+
T Consensus 377 ---~l~~-~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~-----~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 377 ---NITA-DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ-----SLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp ---HTTC-SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS-----CHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred ---HcCC-CChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHHHHHhhhhcC
Confidence 2233 567888888888888887664 667788899999999998875 78899999999999998877655
Q ss_pred -hhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcC----cccccCCcchHHHHHHHHHhcCCC-CHHHHHHHHHH
Q 000194 724 -RQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTG----YVITPYNEYPQLLGLLLKMLNGEL-VWSTRREVLKV 797 (1880)
Q Consensus 724 -~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~----~~i~p~~~~p~ll~~Ll~~L~~~~-~~~vr~~~l~~ 797 (1880)
.+|++.++|.+++.+.|. ..+|..|+++|+.+++..+ ..+.||. |.+++.|++.++... ++.+|..++++
T Consensus 448 ~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~a 523 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSA 523 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHH
Confidence 679999999999999874 6799999999999999876 4466774 789999999997432 36899999999
Q ss_pred HHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcC---------
Q 000194 798 LGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRD--------- 868 (1880)
Q Consensus 798 lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d--------- 868 (1880)
+|.+....+... .. |...+++.++..|.+
T Consensus 524 l~~l~~~~~~~~-----------------------------------------~~-~~~~l~~~l~~~l~~~~~~~~~i~ 561 (861)
T 2bpt_A 524 LTTMVEYATDTV-----------------------------------------AE-TSASISTFVMDKLGQTMSVDENQL 561 (861)
T ss_dssp HHHHHHHCCGGG-----------------------------------------HH-HHHHHHHHHHHHHHHHTTSCGGGC
T ss_pred HHHHHHHcchhh-----------------------------------------HH-HHHHHHHHHHHHHHHHHhhhcccC
Confidence 998864322100 00 112333344444331
Q ss_pred -----CChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCc-chhHHHHHHHHHHHHHHHHhHHHhHHHHH
Q 000194 869 -----PSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDD-YLKDYITWKLGTLVSIVRQHIRKYLQELF 942 (1880)
Q Consensus 869 -----~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~-~~~~~~~~~l~~lv~~~~~~i~~y~~~i~ 942 (1880)
......+..+++++..+++.+|..+.||++.++|.++..++..+. .+++.++..++.++...+.++.||++.++
T Consensus 562 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~ 641 (861)
T 2bpt_A 562 TLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFS 641 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 112235567899999999999998899999999999999998776 89999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccc-cCchhhHHHHHHHH-HHHhc
Q 000194 943 SLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAER-CNDYTYVLDILHTL-EVFGG 1020 (1880)
Q Consensus 943 ~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~-~~~~~~~~~il~~l-~~~g~ 1020 (1880)
+.+.+.++..+ + . ....++.+++.++..+++.|.||++.++|.+++.+.+.+. ..-+..+..++..+ ..+|.
T Consensus 642 ~~l~~~l~~~~-~----~-vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 642 PYLLKALNQVD-S----P-VSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHCTT-S----H-HHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhcccc-H----H-HHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence 99999986433 1 1 2236888999999999999999999999999999976421 11123333344333 34688
Q ss_pred chhhhhhhhHHHHHHhhcCCC----------cHHHHHHHHHHHHhhccccc-----ccchhHhHHHHHHHhhCCC----C
Q 000194 1021 TLDEHMHLLLPALIRLFKVDA----------PVDIRRAAIETLTRLIPRVQ-----VTGHISSLVHHLKLVLDGK----N 1081 (1880)
Q Consensus 1021 ~~~~~~~~ilp~l~~~l~~~~----------~~~vr~~ai~~l~~l~~~~~-----~~~~~~~ii~~l~~~l~~~----~ 1081 (1880)
.+.+|+..++|.+.+.+.... ...+|..++++++.++.... +.+|++.+++.+.+.+.+. +
T Consensus 716 ~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~ 795 (861)
T 2bpt_A 716 DFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSE 795 (861)
T ss_dssp GGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCc
Confidence 899999999999999886421 14689999999999987654 7889999999999988653 7
Q ss_pred HHHHHHHHHHHHHHHHHh-ccccccchh-HHHHHHHh
Q 000194 1082 DELRKDAVDALCCLAHAL-GEDFTIFIP-SIHKLLLK 1116 (1880)
Q Consensus 1082 ~~l~~~al~~L~~l~~~~-g~~f~~fip-~i~~~l~~ 1116 (1880)
.++|..|+.+|+.|+..+ |.+|.+|++ .+.+.+.+
T Consensus 796 ~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~ 832 (861)
T 2bpt_A 796 DATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIK 832 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHH
Confidence 889999999999999999 999999998 77777665
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=375.90 Aligned_cols=958 Identities=13% Similarity=0.137 Sum_probs=615.5
Q ss_pred HHHHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChH-----HHHHHHHHHHHHHHhhhc-CCChhhhhhHHHHHhH
Q 000194 23 LDALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGE-----AFSRFMDQLYDRISGLLE-SNDAAENLGALRAIDE 95 (1880)
Q Consensus 23 ~~~~~~l~~~l~s~~~~~~~-aa~~l~~~v~~~~~~~~~~-----~~~~~~~~l~~~i~~l~~-s~~~~~r~~~i~ai~~ 95 (1880)
+.++..+++.|.+.....|. |+..|..++. .+.++ ....+++++.+.+.+.++ ++++..|.+|+.++..
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~----~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIG----ELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHH----HCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----hCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 34555666666666554443 5666665553 33332 245678888888888887 5888999999999999
Q ss_pred hhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHH
Q 000194 96 LIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVL 175 (1880)
Q Consensus 96 Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~ 175 (1880)
++...+....+....+.+.+...+. +.+..|++.|+.+++.++...+. ++++..++.+++.|..+.++..|.+|+.
T Consensus 161 ~~~~~~~~l~~~~~~ll~~l~~~L~-~~~~~vR~~a~~al~~l~~~~~~---~~~~~~l~~l~~~L~~~~~~~~r~~a~~ 236 (1230)
T 1u6g_C 161 MLSRQGGLLVNFHPSILTCLLPQLT-SPRLAVRKRTIIALGHLVMSCGN---IVFVDLIEHLLSELSKNDSMSTTRTYIQ 236 (1230)
T ss_dssp HHHHTCSSCTTTHHHHHHHHGGGGG-CSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 9865322223355666677777775 55789999999999999986332 2334445556666654433567888999
Q ss_pred HHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccC-----
Q 000194 176 ILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGR----- 250 (1880)
Q Consensus 176 ~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~----- 250 (1880)
+++.++...|..|.+|++.+++.++..+.|+++.||+.|..+++.+.+.... ....++..+++.+...+..
T Consensus 237 ~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~l~~li~~ll~~l~~d~~~~ 312 (1230)
T 1u6g_C 237 CIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK----EVYPHVSTIINICLKYLTYDPNYN 312 (1230)
T ss_dssp HHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC----CCHHHHHHHHHHHTTCCCCC----
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH----HHHHhHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999999999999999999988764331 1123556666666554421
Q ss_pred -------------------------------CCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHH
Q 000194 251 -------------------------------NAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRL 299 (1880)
Q Consensus 251 -------------------------------~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~ 299 (1880)
...|++|.+|+.+++.++...++.+.++++++++.++..+.++++.||.
T Consensus 313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~ 392 (1230)
T 1u6g_C 313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKA 392 (1230)
T ss_dssp --------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHH
T ss_pred CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHH
Confidence 0126789999999999998777778889999999888888889999999
Q ss_pred HHHHHhHhHhhhC------------------hhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhh
Q 000194 300 SITSLLPRIAHFL------------------RDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHY 359 (1880)
Q Consensus 300 ~~~~~i~~la~~~------------------~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~ 359 (1880)
+++.+++.+.... +....+.+++.+++.+...++++. .|..++.++|.++...++.+.+|
T Consensus 393 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~ 472 (1230)
T 1u6g_C 393 DVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQH 472 (1230)
T ss_dssp HHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGG
T ss_pred HHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHH
Confidence 9999988876532 123345677888888888887654 47889999999999888778899
Q ss_pred hhHHHHHHHHhhcCCCC--CCCchHHHHHHHHHHHhCCC-chHHHHHHHHHHHhcC--CCHH----HHHHHHHHHHhCCC
Q 000194 360 LPTITSHLREAIAPRRG--KPSLEALACVGNIARAMGPV-MEPHVRGLLDIMFSAG--LSTT----LVDALEQITVSIPS 430 (1880)
Q Consensus 360 l~~i~~~l~~~l~~~~~--~~~~~a~~~l~~la~~~g~~-~~~~l~~ll~~l~~~~--ls~~----l~~~l~~i~~~~p~ 430 (1880)
++.+++.+...+.+... ..+..++.+++.+.+..|+. |.||++.++|.++.+- -+.. ...++..+++.+.+
T Consensus 473 l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~ 552 (1230)
T 1u6g_C 473 IPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRP 552 (1230)
T ss_dssp HHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcC
Confidence 99999999999977643 23457888888888888875 9999999999988641 2222 23345556555432
Q ss_pred -------ChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc-ccCCCcchhh
Q 000194 431 -------LLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF-NFKGHDLLEF 502 (1880)
Q Consensus 431 -------l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~-~~~~~~l~~~ 502 (1880)
-.....+.++..+...+... ..+.+....|+.++|.+ ...|..+.++
T Consensus 553 ~~~~~~~~~~~~~~~ll~~ll~~l~~~-------------------------d~~~~vr~~a~~~lg~L~~~~g~~~~~~ 607 (1230)
T 1u6g_C 553 LDQPSSFDATPYIKDLFTCTIKRLKAA-------------------------DIDQEVKERAISCMGQIICNLGDNLGSD 607 (1230)
T ss_dssp SSSCCCCCCHHHHHHHHHHHHHHHSCS-------------------------SSCHHHHHHHHHHHHHHHHHTGGGCCTH
T ss_pred cccccccchHHHHHHHHHHHHHHHhcc-------------------------CCCHHHHHHHHHHHHHHHHHhCchhhhh
Confidence 22222334444433322110 01222445677777776 2224445555
Q ss_pred HHHHHhhhcc-CCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHH
Q 000194 503 ARDSVVLYLD-DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSI 581 (1880)
Q Consensus 503 v~~~~~~~l~-~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~ 581 (1880)
+..++..+.+ -.++.+|..++.++..+...... ......+..+++.|.. .+.++++.+|..+
T Consensus 608 ~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~----------------~~~~~~~~~i~~~L~~-~l~~~~~~~r~~a 670 (1230)
T 1u6g_C 608 LPNTLQIFLERLKNEITRLTTVKALTLIAGSPLK----------------IDLRPVLGEGVPILAS-FLRKNQRALKLGT 670 (1230)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSC----------------CCCHHHHHHHHHHHHH-HTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHhCccc----------------cchHHHHHHHHHHHHH-HHHhCCHHHHHHH
Confidence 5544332221 12456888888877776532110 0124567777776655 5778999999999
Q ss_pred HHhccCC-CCcchhhccHhhHHHH---HHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChH
Q 000194 582 FSSLYGN-RGFDDFLAQADCLSAI---FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNK 657 (1880)
Q Consensus 582 l~~l~~~-~~fd~~L~~~~~l~~L---~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~ 657 (1880)
+.+++.- ......+....+.+.+ ...++|++.+++..++.+|+.+...+|..+.++...++..++..+... .
T Consensus 671 ~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~-~--- 746 (1230)
T 1u6g_C 671 LSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSP-L--- 746 (1230)
T ss_dssp HHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCT-T---
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCc-c---
Confidence 8888410 0000001111222222 234578899999999999999999998766555555554444444433 1
Q ss_pred hHHHHHHHHHHHHHhCcccc--cCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHH
Q 000194 658 CREESAKLLGCLIRNCERLI--RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIV 735 (1880)
Q Consensus 658 ~r~~a~~~L~~l~~~~~~~~--~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~ 735 (1880)
.+..+...+..+.+.....- .+.++.+++.++..+..+........+...+..++|.+....|.... .+++.++
T Consensus 747 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~----~~~~~~~ 822 (1230)
T 1u6g_C 747 LQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP----AVVGQFI 822 (1230)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH----HHHTTTT
T ss_pred cchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhH----HHHHHHH
Confidence 11222333333332211111 34677777777654432110001345567778899999888777655 3444455
Q ss_pred HHHhcC-CchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccc
Q 000194 736 EALLDG-AAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ 814 (1880)
Q Consensus 736 ~~l~d~-~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~ 814 (1880)
..+++. .+...+..++.++|.+....+ +.+ +|++.+.+...+.++ ++.||.++..++|.++.-.
T Consensus 823 ~~~~~~~~~~~~~~~~l~~l~~~g~~~~--~~~---~~~l~~~~~~~l~~~-~~~Vr~aAa~aLg~l~~~~--------- 887 (1230)
T 1u6g_C 823 QDVKNSRSTDSIRLLALLSLGEVGHHID--LSG---QLELKSVILEAFSSP-SEEVKSAASYALGSISVGN--------- 887 (1230)
T ss_dssp TTTTTTTCCHHHHHHHHHHHHHHHHHSC--CCS---CTHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHT---------
T ss_pred HHhCCCCccHHHHHHHHHHHHHhcccCC--Ccc---cccHHHHHHHHhCCC-CHHHHHHHHHHhHHHhccC---------
Confidence 555432 244567788888888755432 222 478999999999764 8999999999999886200
Q ss_pred cCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCC-CC
Q 000194 815 LSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGL-GC 893 (1880)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~-~~ 893 (1880)
...+++.+++.+.+.. ..+.....++..++...+. ..
T Consensus 888 ----------------------------------------~~~~lp~ll~~l~~~~--~~~~~~l~al~e~i~~~~~~~~ 925 (1230)
T 1u6g_C 888 ----------------------------------------LPEYLPFVLQEITSQP--KRQYLLLHSLKEIISSASVVGL 925 (1230)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHSCG--GGHHHHHHHHHHHHHSSCSTTT
T ss_pred ----------------------------------------HHHHHHHHHHHHhccc--hhhHHHHHHHHHHHhcCChhhH
Confidence 0223455566665432 2345678888888876543 34
Q ss_pred CCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHH
Q 000194 894 VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQL 973 (1880)
Q Consensus 894 ~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l 973 (1880)
.||.++|.+.++..+...++..|..+...+|.++.... ..++| .+.+.+...+ + .....++.++..+
T Consensus 926 ~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~---~~l~p----~l~~~l~~~~-~-----~~R~~~~~~l~~~ 992 (1230)
T 1u6g_C 926 KPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP---ETLLP----RLKGYLISGS-S-----YARSSVVTAVKFT 992 (1230)
T ss_dssp HHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG---GGTHH----HHTTTSSSSC-H-----HHHHHHHHHTGGG
T ss_pred HhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh---HHHHH----HHHHHhcCCC-H-----HHHHHHHHHHHHH
Confidence 57888888888877766566688888888888775532 23334 3444444332 0 0111333333333
Q ss_pred HHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHH-HhcchhhhhhhhHHHHHHhhcC-------------
Q 000194 974 CLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEV-FGGTLDEHMHLLLPALIRLFKV------------- 1039 (1880)
Q Consensus 974 ~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~-~g~~~~~~~~~ilp~l~~~l~~------------- 1039 (1880)
....+..+.+|++.++|.++..|++.+.. -|..+...+.++.. -+..+.+|+..++|.+......
T Consensus 993 ~~~~~~~~~~~l~~~~~~ll~~l~d~~~~-vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~ 1071 (1230)
T 1u6g_C 993 ISDHPQPIDPLLKNCIGDFLKTLEDPDLN-VRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPF 1071 (1230)
T ss_dssp CCSSCCTHHHHHHHHSTTTHHHHSSSSTH-HHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTE
T ss_pred HccCchhhHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCc
Confidence 33334567788999999999999765322 13334444444333 3445678888899988776521
Q ss_pred ----CCcHHHHHHHHHHHHhhcccc-cccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhccccccchhHHHHHH
Q 000194 1040 ----DAPVDIRRAAIETLTRLIPRV-QVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLL 1114 (1880)
Q Consensus 1040 ----~~~~~vr~~ai~~l~~l~~~~-~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~fip~i~~~l 1114 (1880)
+...++|+.|.+++..+...- +-.+ +..++..++.-+.+ +.++|.-+...|..|+..-......+++.+...+
T Consensus 1072 k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~-~~~~~~~~~~gl~d-~~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 1149 (1230)
T 1u6g_C 1072 KHTVDDGLDIRKAAFECMYTLLDSCLDRLD-IFEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPL 1149 (1230)
T ss_dssp EEEEETHHHHHHHHHHHHHHHHHSSCSSSC-HHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHH
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHcccCc-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 123489999999999997641 1111 34445555567765 5899999999999998876655555555555544
Q ss_pred H
Q 000194 1115 L 1115 (1880)
Q Consensus 1115 ~ 1115 (1880)
.
T Consensus 1150 ~ 1150 (1230)
T 1u6g_C 1150 R 1150 (1230)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-30 Score=358.24 Aligned_cols=755 Identities=13% Similarity=0.133 Sum_probs=529.1
Q ss_pred CCHHHHHHHHHHH-cCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-CChhhhhhHHHHHhHhh
Q 000194 21 GSLDALNRILADL-CTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-NDAAENLGALRAIDELI 97 (1880)
Q Consensus 21 ~~~~~~~~l~~~l-~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~~~~~r~~~i~ai~~Li 97 (1880)
|.+..+.+++.++ .+++.+.++ |...|..+-. ++...|+..+.+. +.++ .+...|..|...+...+
T Consensus 1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~--------~~~~~~~~~l~~i---l~~~~~~~~vR~~A~~~lk~~i 69 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSN--------DNFLQFAGLSSQV---LIDENTKLEGRILAALTLKNEL 69 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHH--------HCHHHHHHHHHHH---HTCTTSCHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHcccCcCHHHHHHHHHHHHHHHh--------hCHHHHHHHHHHH---HhCCCCChHHHHHHHHHHHhhc
Confidence 6677889999999 888655554 6555554321 1123344334332 2233 46777887777777776
Q ss_pred ccccC-------------cchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC--CCCchhHHHHHHHHHHhhhc
Q 000194 98 DVALG-------------ENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG--GAMTADEVEFQVKMALDWLR 162 (1880)
Q Consensus 98 ~~~~~-------------~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~--g~~~~~~v~~~~~~~~~~l~ 162 (1880)
...-. -.......+-+.|...+. +.+..++..++.+++.++... +..|+++++.+ ++.+.
T Consensus 70 ~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~-~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L----~~~l~ 144 (861)
T 2bpt_A 70 VSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALV-SIEPRIANAAAQLIAAIADIELPHGAWPELMKIM----VDNTG 144 (861)
T ss_dssp CCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHH----HHHTS
T ss_pred cCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHHHHhhCcccccHHHHHHH----HHHHh
Confidence 43100 001111122234444453 457899999999999998862 23677765554 44555
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCcc---chhchHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHhhhchhhHHHHH
Q 000194 163 GDRVEYRRFAAVLILKEMAENASTV---FNVHVAEFVDAIWVALRDP--TLAVRERAVEALRACLRVIEKRETRWRVQWY 237 (1880)
Q Consensus 163 ~~~~~~~R~aA~~~l~~la~~~p~~---l~~~l~~i~~~i~~~l~D~--~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~ 237 (1880)
+++++..|++|+.+++.+++..+.. +.++++.+++.+..++.|+ ++.||.+|.++++.++..+...... ... .
T Consensus 145 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~-~~~-~ 222 (861)
T 2bpt_A 145 AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMER-EGE-R 222 (861)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTS-HHH-H
T ss_pred cCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccC-hhH-H
Confidence 4436788999999999999876543 6789999999999999998 8999999999999876654421110 001 1
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh---
Q 000194 238 YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR--- 313 (1880)
Q Consensus 238 ~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~--- 313 (1880)
..+++.+...+.++ +++++++++.+|+.++...++.+.+++. .+++.++..+.+.++.||..++..+..++....
T Consensus 223 ~~ll~~l~~~~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 301 (861)
T 2bpt_A 223 NYLMQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIA 301 (861)
T ss_dssp HHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 22444444445554 4889999999999999988888889999 899988888889999999999999998886531
Q ss_pred -------------hhHHHHHHHHHHHHHHHhhcCC---------CCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhh
Q 000194 314 -------------DRFVTNYLKICMNHILTVLRIP---------AERDSGFIALGEMAGALDGELFHYLPTITSHLREAI 371 (1880)
Q Consensus 314 -------------~~f~~~yl~~~~~~Ll~~L~~~---------~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l 371 (1880)
..+...++..++|.++..+... ..|..|..+++.++...|+. .++.+++.+.+.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~---~~~~l~~~l~~~l 378 (861)
T 2bpt_A 302 YELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH---ILEPVLEFVEQNI 378 (861)
T ss_dssp HHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG---GHHHHHHHHHHHT
T ss_pred hhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh---HHHHHHHHHHHHc
Confidence 1245567788999998888642 13567888888888888753 4566777777777
Q ss_pred cCCCCCCCchHHHHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC
Q 000194 372 APRRGKPSLEALACVGNIARAMG-PVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKS 450 (1880)
Q Consensus 372 ~~~~~~~~~~a~~~l~~la~~~g-~~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~ 450 (1880)
.+.+.+.+..++.++|.+++..+ ..+.++++.+++.+
T Consensus 379 ~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l------------------------------------------ 416 (861)
T 2bpt_A 379 TADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI------------------------------------------ 416 (861)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH------------------------------------------
T ss_pred CCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH------------------------------------------
Confidence 54433334567777777665433 22333333332221
Q ss_pred CCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhh
Q 000194 451 HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLV 530 (1880)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~ 530 (1880)
.+.+.++++.||.+|+.+++++.
T Consensus 417 ---------------------------------------------------------~~~l~d~~~~vr~~a~~~l~~l~ 439 (861)
T 2bpt_A 417 ---------------------------------------------------------LNLMNDQSLQVKETTAWCIGRIA 439 (861)
T ss_dssp ---------------------------------------------------------HHGGGCSCHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------HHHcCCCcHHHHHHHHHHHHHHH
Confidence 22344557788887766655543
Q ss_pred hccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCC
Q 000194 531 ANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALND 610 (1880)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D 610 (1880)
..... .+. .. +++ +.+++.++..++|
T Consensus 440 ~~~~~------------------------------------------------~~~-~~---~~~--~~~l~~l~~~l~~ 465 (861)
T 2bpt_A 440 DSVAE------------------------------------------------SID-PQ---QHL--PGVVQACLIGLQD 465 (861)
T ss_dssp HHHGG------------------------------------------------GSC-TT---TTH--HHHHHHHHHHHTS
T ss_pred HHhhh------------------------------------------------hcC-CH---HHH--HHHHHHHHHHhcc
Confidence 21100 000 00 011 2345666666667
Q ss_pred CCHhHHHHHHHHHHhhhcCC----cccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHH
Q 000194 611 EDFDVREYAISVAGRLSEKN----PAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHK 686 (1880)
Q Consensus 611 ~~~~VR~~a~~~l~~l~~~~----p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~ 686 (1880)
+ +.||..|...++.+++.. +..+.|++..++..++..+...+.+...|..++.+++.++...+..+.||+..+++
T Consensus 466 ~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~ 544 (861)
T 2bpt_A 466 H-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASIST 544 (861)
T ss_dssp C-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHH
T ss_pred C-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHH
Confidence 5 788888888888877653 34566888877766666665432346789999999999999999888999999999
Q ss_pred HHHHHhccCCCC----------CCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 000194 687 ALVARLLEGTGI----------NANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQ 756 (1880)
Q Consensus 687 ~ll~~l~~~~~~----------~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~ 756 (1880)
.++..+.+.... +....++..++.+++.++...|..+.||++.++|.++..+++..+..+|+.++.+++.
T Consensus 545 ~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~ 624 (861)
T 2bpt_A 545 FVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISA 624 (861)
T ss_dssp HHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHH
Confidence 988887642000 0134567788999999999999999999999999999999876322789999999999
Q ss_pred HHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCC
Q 000194 757 VVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPM 836 (1880)
Q Consensus 757 l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (1880)
++...|..+.||. |.+++.++..++. .++.+|..++.++|.+...-.
T Consensus 625 l~~~~~~~~~~~l--~~i~~~l~~~l~~-~~~~vr~~a~~~l~~l~~~~~------------------------------ 671 (861)
T 2bpt_A 625 LAASLGKGFEKYL--ETFSPYLLKALNQ-VDSPVSITAVGFIADISNSLE------------------------------ 671 (861)
T ss_dssp HHHHHGGGGHHHH--HHHHHHHHHHHHC-TTSHHHHHHHHHHHHHHHHTG------------------------------
T ss_pred HHHHHhhhHHHHH--HHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHhc------------------------------
Confidence 9999888777774 7899999999964 356799999998887641000
Q ss_pred cccccccCCCCCCCcccchHHHHHHHHHHhcCCC-hhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCC---
Q 000194 837 DEFPMDLWPSFATSEDYYSTVAINSLMRILRDPS-LASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCD--- 912 (1880)
Q Consensus 837 ~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s-~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~--- 912 (1880)
... .-|...+++.+++.|++++ .......++.++..++...|..+.||++.++|.++..+....
T Consensus 672 -----------~~~-~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 739 (861)
T 2bpt_A 672 -----------EDF-RRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENG 739 (861)
T ss_dssp -----------GGG-HHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSS
T ss_pred -----------hhc-cchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCC
Confidence 000 1144677888889888763 245677899999999999999999999999999999887532
Q ss_pred --------cchhHHHHHHHHHHHHHHH---HhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHh-hhh
Q 000194 913 --------DYLKDYITWKLGTLVSIVR---QHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLAL-NDE 980 (1880)
Q Consensus 913 --------~~~~~~~~~~l~~lv~~~~---~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l-~~~ 980 (1880)
..+|..++..++.++..++ ..+.+|++.+++.+.......+.+ .... ....++.+++.++.++ |.+
T Consensus 740 d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~-~~~~-vr~~a~~~l~~l~~~~~g~~ 817 (861)
T 2bpt_A 740 TLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLY-SEDA-TSRAAVGLIGDIAAMFPDGS 817 (861)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHH-TSHH-HHHHHHHHHHHHHHHCTTST
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccC-CcHH-HHHHHHHHHHHHHHHcCCch
Confidence 2367888888888888777 789999999999998776431000 0011 2237899999999999 999
Q ss_pred hhccch-hhHHHHHHhccc
Q 000194 981 FRTHLP-VILPCCIQVLSD 998 (1880)
Q Consensus 981 f~~yl~-~l~p~ll~~l~~ 998 (1880)
|.+|++ .++|.+++.++.
T Consensus 818 ~~~~~~~~~~~~ll~~l~~ 836 (861)
T 2bpt_A 818 IKQFYGQDWVIDYIKRTRS 836 (861)
T ss_dssp TGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHhh
Confidence 999999 999999999874
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=360.91 Aligned_cols=655 Identities=16% Similarity=0.178 Sum_probs=471.0
Q ss_pred CCHHHHHHHHHHHcCCCC-chhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhcc
Q 000194 21 GSLDALNRILADLCTHGN-PKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDV 99 (1880)
Q Consensus 21 ~~~~~~~~l~~~l~s~~~-~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~ 99 (1880)
.-++++..+++.+.+.+. .++.|...|..+++........+.+.+.++.+...+.+++++++...|.+|+.++..++..
T Consensus 125 ~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 125 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 457789999999988754 3445777888888665433322222344667788888888889999999999999988765
Q ss_pred ccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHH
Q 000194 100 ALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKE 179 (1880)
Q Consensus 100 ~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~ 179 (1880)
..+.....+..+.+.+...+. ++|.++++.|+++|++++...+.....+++..++.++..++ +.++..|..|+.+|..
T Consensus 205 ~~~~~~~~~~~~l~~l~~~~~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~-~~~~~vr~~a~e~l~~ 282 (852)
T 4fdd_A 205 RTQALMLHIDSFIENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ-DQDENVALEACEFWLT 282 (852)
T ss_dssp TCHHHHTSHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHT-CSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc-CCcHHHHHHHHHHHHH
Confidence 321112223344455555553 56889999999999999987433333345555555555554 4566789999999999
Q ss_pred HHhh--cCccchhchHHHHHHHHHHh-----------cC-----------CchhHHHHHHHHHHHHHHHHhhhchhhHHH
Q 000194 180 MAEN--ASTVFNVHVAEFVDAIWVAL-----------RD-----------PTLAVRERAVEALRACLRVIEKRETRWRVQ 235 (1880)
Q Consensus 180 la~~--~p~~l~~~l~~i~~~i~~~l-----------~D-----------~~~~VR~aA~~al~~~~~~i~~r~~~~~~~ 235 (1880)
+++. +...+.+++..++|.++..+ .| .+..||.+|..+++.+.....+ .
T Consensus 283 l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-------~ 355 (852)
T 4fdd_A 283 LAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-------E 355 (852)
T ss_dssp HTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-------G
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-------H
Confidence 9875 33457889999999999988 45 4457899999999988765531 2
Q ss_pred HHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhh
Q 000194 236 WYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDR 315 (1880)
Q Consensus 236 ~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~ 315 (1880)
.+..+++.+...+.++ +|.+|++|+.+++.+.+++++.+.++++++++.++..+++.++.||.+++.+++.++.+.+..
T Consensus 356 ~~~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 434 (852)
T 4fdd_A 356 LLPHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ 434 (852)
T ss_dssp GHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS
T ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 3456677777777776 599999999999999998888888999999999999999999999999999999999876544
Q ss_pred HHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHh
Q 000194 316 FVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1880)
Q Consensus 316 f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~ 393 (1880)
....|++.+++.++..|.+.. .|..|+.+++.++...++.+.||++.+++.+...+.....+....+++|++.++...
T Consensus 435 ~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~ 514 (852)
T 4fdd_A 435 PPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSV 514 (852)
T ss_dssp CTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 445688999999999997543 578999999999999999999999999999999886443222235789999999999
Q ss_pred CCCc--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCc
Q 000194 394 GPVM--EPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQ 471 (1880)
Q Consensus 394 g~~~--~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1880)
|+.+ .+|++.++|.+++. +. .+ ..
T Consensus 515 ~~~~~~~~~~~~l~p~l~~~---------~~-------------------~l----~d---------------------- 540 (852)
T 4fdd_A 515 GHHLNKPEYIQMLMPPLIQK---------WN-------------------ML----KD---------------------- 540 (852)
T ss_dssp GGGGCCHHHHHHHHHHHHHH---------HH-------------------HS----CT----------------------
T ss_pred hhhhccHHHHHHHHHHHHHH---------HH-------------------hc----cc----------------------
Confidence 9866 35888888876631 00 00 00
Q ss_pred cccccCCchhHHHHHHhhcccc-cCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCcccccc
Q 000194 472 QVSDLNGSAPVQLALQTLARFN-FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRT 550 (1880)
Q Consensus 472 ~~~~~~~~~~~~~Al~~L~~~~-~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~ 550 (1880)
+ ++ ....++++++.+. .-|..+.||+..++.. |..++.
T Consensus 541 ---~--~~-~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~----------------~~~~l~------------------- 579 (852)
T 4fdd_A 541 ---E--DK-DLFPLLECLSSVATALQSGFLPYCEPVYQR----------------CVNLVQ------------------- 579 (852)
T ss_dssp ---T--CT-THHHHHHHHHHHHHHHGGGGHHHHHHHHHH----------------HHHHHH-------------------
T ss_pred ---c--cH-HHHHHHHHHHHHHHHHhHhHHHHHHHHHHH----------------HHHHHH-------------------
Confidence 0 00 1112344443331 0123334444443211 111110
Q ss_pred ccchhHHHHHHHHH-HHHH----HhcCCChhHHHHHHHhccC-----CCCcchhhccHhhHHHHHHHhCCCCHhHHHHHH
Q 000194 551 GGKRRRLIEELVEK-LLIA----AVADADVTVRHSIFSSLYG-----NRGFDDFLAQADCLSAIFAALNDEDFDVREYAI 620 (1880)
Q Consensus 551 ~~~~~~~~~~vl~~-Ll~~----~~~d~~~~vR~~~l~~l~~-----~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~ 620 (1880)
..+.+ .... ...+++.++|..++..++. ...|.+++..+.+++.++.+++|++..||+.++
T Consensus 580 ---------~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~ 650 (852)
T 4fdd_A 580 ---------KTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSF 650 (852)
T ss_dssp ---------HHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHH
T ss_pred ---------HHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHH
Confidence 00000 0000 0122345555544444321 245566664557899999999999999999999
Q ss_pred HHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCC
Q 000194 621 SVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINA 700 (1880)
Q Consensus 621 ~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~ 700 (1880)
.+++.++..++..+.|++..++..++..+.. ++...|..|++++|.++...+..+.||+..+++.+++.++++. .
T Consensus 651 ~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~--~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~---~ 725 (852)
T 4fdd_A 651 ALLGDLTKACFQHVKPCIADFMPILGTNLNP--EFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN---T 725 (852)
T ss_dssp HHHHHHHHHCGGGTGGGHHHHHHHHHHTCCT--TSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSS---C
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHcCc--cchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCC---C
Confidence 9999999999999999998877666666633 4678899999999999999988899999999999999998652 3
Q ss_pred ChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHH
Q 000194 701 NNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780 (1880)
Q Consensus 701 ~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~ 780 (1880)
...++.+++.++|.|+..+++.+.||++++++.++..|.+..+.+.|+.|..+|+.++...+.. ..+.+...+-.
T Consensus 726 ~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~-----~~~~~~~~~~~ 800 (852)
T 4fdd_A 726 PKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSG-----VIQDFIFFCDA 800 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGG-----TGGGHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHh-----HHHHHHHHHHH
Confidence 6689999999999999998888999999999999999987777889999999999999875443 23444544444
Q ss_pred HhcC-CCCHHHHHHHHHHHH
Q 000194 781 MLNG-ELVWSTRREVLKVLG 799 (1880)
Q Consensus 781 ~L~~-~~~~~vr~~~l~~lg 799 (1880)
+.+- +..++++....+++.
T Consensus 801 ~~~~~~~~~~l~~~~~~~l~ 820 (852)
T 4fdd_A 801 VASWINPKDDLRDMFCKILH 820 (852)
T ss_dssp HHTCSSCCHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHH
Confidence 3332 235677776666653
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-28 Score=341.10 Aligned_cols=787 Identities=13% Similarity=0.098 Sum_probs=521.5
Q ss_pred HHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-CChhhhhhHHHHHhHhhccccC-
Q 000194 26 LNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-NDAAENLGALRAIDELIDVALG- 102 (1880)
Q Consensus 26 ~~~l~~~l~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~~~~~r~~~i~ai~~Li~~~~~- 102 (1880)
+.+++..+.+++.+.++ |...|..+- .+....++..|.+.+ .++ .+...|..|..++...+.....
T Consensus 3 l~~~L~~~~s~d~~~r~~A~~~L~~~~--------~~~~~~~~~~L~~~l---~~~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (876)
T 1qgr_A 3 LITILEKTVSPDRLELEAAQKFLERAA--------VENLPTFLVELSRVL---ANPGNSQVARVAAGLQIKNSLTSKDPD 71 (876)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH---HCTTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHH--------hcChhhHHHHHHHHH---hCCCCCHHHHHHHHHHHHHhccccchH
Confidence 56788888888655554 665555532 222334444444322 232 4567788888888776542100
Q ss_pred ----------c-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhh--CCCCchhHHHHHHHHHHhhhcCCC-cch
Q 000194 103 ----------E-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA--GGAMTADEVEFQVKMALDWLRGDR-VEY 168 (1880)
Q Consensus 103 ----------~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~--~g~~~~~~v~~~~~~~~~~l~~~~-~~~ 168 (1880)
. ........-+.|...+. ..+..+ ..++.+++.++.. +...++++++..+. .+.++. ++.
T Consensus 72 ~~~~~~~~w~~l~~~~~~~ik~~ll~~l~-~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~----~l~~~~~~~~ 145 (876)
T 1qgr_A 72 IKAQYQQRWLAIDANARREVKNYVLHTLG-TETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVA----NVTNPNSTEH 145 (876)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHTT-TCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHH----HHHCTTCCHH
T ss_pred hHHHHHhhhccCCHHHHHHHHHHHHHHhC-CCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHH----HHhCCCCCHH
Confidence 0 11111122233444553 446667 9999999999886 22567777666554 344432 667
Q ss_pred hHHHHHHHHHHHHhhc-CccchhchHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHH
Q 000194 169 RRFAAVLILKEMAENA-STVFNVHVAEFVDAIWVALRDP--TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQ 245 (1880)
Q Consensus 169 ~R~aA~~~l~~la~~~-p~~l~~~l~~i~~~i~~~l~D~--~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~ 245 (1880)
.|.+|+.+++.+++.. |..+.++++.+++.+..++.|+ ++.||..|.++++.++..+...- ....+...+++.+.
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~--~~~~~~~~il~~l~ 223 (876)
T 1qgr_A 146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF--DKESERHFIMQVVC 223 (876)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH--TSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHH
Confidence 8999999999999875 5678899999999999999987 68999999999998765443210 01112223555555
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHH
Q 000194 246 DGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKIC 324 (1880)
Q Consensus 246 ~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~ 324 (1880)
..+.+. +.+++.+++.+|+.++...++.+.+++. .+++.++....+.++.||..++..+..++........+. ...
T Consensus 224 ~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~--~~~ 300 (876)
T 1qgr_A 224 EATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEA--SEA 300 (876)
T ss_dssp HHTTCS-SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
T ss_pred HHcCCC-CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhh--ccc
Confidence 555554 4788999999999999988888999999 899999888888899999999999988876432100000 000
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhc-------CCCCCCCchHHHHHHHHHHHhCCCc
Q 000194 325 MNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIA-------PRRGKPSLEALACVGNIARAMGPVM 397 (1880)
Q Consensus 325 ~~~Ll~~L~~~~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~-------~~~~~~~~~a~~~l~~la~~~g~~~ 397 (1880)
++ . .....+. ......++++.+++.+.+.+. +...+.+..+..|++.++..+|+.+
T Consensus 301 ~~---~--~~~~~~~------------~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~ 363 (876)
T 1qgr_A 301 AE---Q--GRPPEHT------------SKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI 363 (876)
T ss_dssp HH---H--SSCCSSC------------CCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG
T ss_pred cc---c--CCCccch------------hHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhh
Confidence 00 0 0000000 000011222333333333331 2333445677888888888888765
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccC
Q 000194 398 EPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLN 477 (1880)
Q Consensus 398 ~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1880)
.+.+-..+...+..
T Consensus 364 ~~~~l~~l~~~l~~------------------------------------------------------------------ 377 (876)
T 1qgr_A 364 VPHVLPFIKEHIKN------------------------------------------------------------------ 377 (876)
T ss_dssp HHHHHHHHHHHTTC------------------------------------------------------------------
T ss_pred HHHHHHHHHHHccC------------------------------------------------------------------
Confidence 55433333333310
Q ss_pred CchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHH
Q 000194 478 GSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL 557 (1880)
Q Consensus 478 ~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1880)
+++.+|.+|..+++.+.... ....
T Consensus 378 ------------------------------------~~~~~r~~a~~~l~~i~~~~--------------------~~~~ 401 (876)
T 1qgr_A 378 ------------------------------------PDWRYRDAAVMAFGCILEGP--------------------EPSQ 401 (876)
T ss_dssp ------------------------------------SSHHHHHHHHHHHHHTSSSS--------------------CHHH
T ss_pred ------------------------------------CChHHHHHHHHHHHHHHcCC--------------------CHHH
Confidence 13445555554444432100 0000
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccc--c
Q 000194 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV--L 635 (1880)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v--~ 635 (1880)
+. +++ +.+++.++..++|+++.||..|+.++++++...+..+ .
T Consensus 402 ~~---------------------------------~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 446 (876)
T 1qgr_A 402 LK---------------------------------PLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446 (876)
T ss_dssp HH---------------------------------HHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSST
T ss_pred HH---------------------------------HHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccH
Confidence 11 111 1346667777889999999999999999998876543 4
Q ss_pred HHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCc--------------ccccCchHHHHHHHHHHhccCCCCCCC
Q 000194 636 PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE--------------RLIRPYIAPIHKALVARLLEGTGINAN 701 (1880)
Q Consensus 636 p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~--------------~~~~py~~~il~~ll~~l~~~~~~~~~ 701 (1880)
|++..++..++..+.+ .++.|+.++++|+.+++.++ ..+.||++.+++.+++.+.+... ..
T Consensus 447 ~~l~~~l~~l~~~l~~---~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~--~~ 521 (876)
T 1qgr_A 447 VYLAPLLQCLIEGLSA---EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG--HQ 521 (876)
T ss_dssp TTHHHHHHHHHHHTTS---CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS--CS
T ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCc--ch
Confidence 6777777777776643 37789999999999998754 45889999999999999886421 24
Q ss_pred hhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcC----------Cc----hhhHHHHHHHHHHHHhhcC-cccc
Q 000194 702 NGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDG----------AA----VTKREVAVSTLGQVVQSTG-YVIT 766 (1880)
Q Consensus 702 ~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~----------~~----~~~r~~Al~~Lg~l~~~~~-~~i~ 766 (1880)
..++..++.+++.++...|..+.+|+..++|.+++.+.+. .+ .+.|..++.+++.++...| ..+.
T Consensus 522 ~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 601 (876)
T 1qgr_A 522 NNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDAL 601 (876)
T ss_dssp TTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhh
Confidence 5788889999999999999999999999999999988641 11 2357788999999999998 7788
Q ss_pred cCCcchHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCC
Q 000194 767 PYNEYPQLLGLLLKMLNGELV-WSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWP 845 (1880)
Q Consensus 767 p~~~~p~ll~~Ll~~L~~~~~-~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 845 (1880)
||. |.+++.+++.+++... +.+|..++.+++.+.....
T Consensus 602 ~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~--------------------------------------- 640 (876)
T 1qgr_A 602 QIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG--------------------------------------- 640 (876)
T ss_dssp TTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHG---------------------------------------
T ss_pred HHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHH---------------------------------------
Confidence 885 7899999999976531 4789999999887642100
Q ss_pred CCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcC--CcchhHHHHHHH
Q 000194 846 SFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTC--DDYLKDYITWKL 923 (1880)
Q Consensus 846 ~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~--~~~~~~~~~~~l 923 (1880)
..... |...+++.|+..|++.........++.++..+++.+|..+.||++.+++.++..+... +..++..++..+
T Consensus 641 --~~~~~-~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l 717 (876)
T 1qgr_A 641 --GEFLK-YMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVF 717 (876)
T ss_dssp --GGGGG-GHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHH
T ss_pred --hhHHH-HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHH
Confidence 00012 2345678888888876334566789999999999999888899999999999999873 456899999999
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCccc-----ccccchhHHHHHHHHHHHhh----------hhhhccchhh
Q 000194 924 GTLVSIVRQHIRKYLQELFSLISELWSSFSLPATN-----RTYRGLPVLHLVQQLCLALN----------DEFRTHLPVI 988 (1880)
Q Consensus 924 ~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~-----~~~~~~~~l~~i~~l~~~l~----------~~f~~yl~~l 988 (1880)
|.++..+|..+.+|++.+++.+.........+... .......++.++..++..++ ..|.||++.+
T Consensus 718 ~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i 797 (876)
T 1qgr_A 718 GDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI 797 (876)
T ss_dssp HHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH
Confidence 99999999999999999999998776533100000 00122356777777777776 3689999999
Q ss_pred HHHHHHhccccc-ccCchhhHHHHHHHHH-HHhc-chhhh-hhhhHHHHHH-hhcCCCcHHHHHHHHHHHHhhcc
Q 000194 989 LPCCIQVLSDAE-RCNDYTYVLDILHTLE-VFGG-TLDEH-MHLLLPALIR-LFKVDAPVDIRRAAIETLTRLIP 1058 (1880)
Q Consensus 989 ~p~ll~~l~~~~-~~~~~~~~~~il~~l~-~~g~-~~~~~-~~~ilp~l~~-~l~~~~~~~vr~~ai~~l~~l~~ 1058 (1880)
++.+.....+.+ ...-|..+..++..+. .+|. .+.+| ...++|.++. .+.. ....+|..|..++|.+++
T Consensus 798 ~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~-~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 798 LSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRS-KTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhc-CCHhHHHHHHHHHHHHHH
Confidence 988877765431 1111333444444433 3455 56666 4567888887 7744 357899999999998864
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-22 Score=269.83 Aligned_cols=574 Identities=14% Similarity=0.057 Sum_probs=388.1
Q ss_pred CCCHHHHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhc
Q 000194 20 GGSLDALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELID 98 (1880)
Q Consensus 20 ~~~~~~~~~l~~~l~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~ 98 (1880)
+.+...+..+++.|++++...|. |++.|..++. .+.++ +..+++...+.+.+ +++...|..+..++..+..
T Consensus 6 ~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~----~~~~~---~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~ 77 (588)
T 1b3u_A 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIAL----ALGVE---RTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTT 77 (588)
T ss_dssp TTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHH----HSCHH---HHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSG
T ss_pred CCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHH----HhCHH---HHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHh
Confidence 34556689999999998765554 7777776652 33333 23345566665655 5677788888888887765
Q ss_pred cccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH-HHHHHHhhhcCCCcchhHHHHHHHH
Q 000194 99 VALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF-QVKMALDWLRGDRVEYRRFAAVLIL 177 (1880)
Q Consensus 99 ~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~-~~~~~~~~l~~~~~~~~R~aA~~~l 177 (1880)
..++. .....+.+.|..++. +.|..|+..|+++++.++..- ..+.+.. .++.+.+ +..+.++..|.+|+.++
T Consensus 78 ~~~~~--~~~~~ll~~L~~l~~-~~~~~vR~~a~~~L~~l~~~~---~~~~~~~~l~~~l~~-l~~~~~~~~R~~a~~~l 150 (588)
T 1b3u_A 78 LVGGP--EYVHCLLPPLESLAT-VEETVVRDKAVESLRAISHEH---SPSDLEAHFVPLVKR-LAGGDWFTSRTSACGLF 150 (588)
T ss_dssp GGTSG--GGGGGGHHHHHHHTT-SSCHHHHHHHHHHHHHHHTTS---CHHHHHHTHHHHHHH-HHTCSSHHHHHHHGGGH
T ss_pred ccCcH--HHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHH-HhcCCCcHHHHHHHHHH
Confidence 53221 223345556666653 568899999999999998752 2232322 2333322 22445678899999999
Q ss_pred HHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHH
Q 000194 178 KEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSI 257 (1880)
Q Consensus 178 ~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 257 (1880)
+.++...+.. ..+.+++.+...+.|+++.||.+|+.+++.+...... ..+...++|.+...+.++ ++.+|
T Consensus 151 ~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~d~-~~~vr 220 (588)
T 1b3u_A 151 SVCYPRVSSA---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL------DNVKSEIIPMFSNLASDE-QDSVR 220 (588)
T ss_dssp HHHTTTSCHH---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH------HHHHHTHHHHHHHHHTCS-CHHHH
T ss_pred HHHHHhcCHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH------HhHHHHHHHHHHHHhcCC-cHHHH
Confidence 9999887753 4677888888999999999999999999988765431 234566777777777666 47899
Q ss_pred HHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC-
Q 000194 258 HGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA- 336 (1880)
Q Consensus 258 ~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~- 336 (1880)
.+|+.+++.+....++. ...+.+.+.+....++++..||.+++.+++.++...+.. .+.+.+++.+...++++.
T Consensus 221 ~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~ 295 (588)
T 1b3u_A 221 LLAVEACVNIAQLLPQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE---ITKTDLVPAFQNLMKDCEA 295 (588)
T ss_dssp TTHHHHHHHHHHHSCHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH---HHHHTHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc---cchhHHHHHHHHHhCCCcH
Confidence 99999999998754421 233445666667778889999999999999998754332 245677888888887654
Q ss_pred -CcchHHHHHHHHHhhchhhhh--hhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCC
Q 000194 337 -ERDSGFIALGEMAGALDGELF--HYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGL 413 (1880)
Q Consensus 337 -~r~~a~~alg~la~~v~~~~~--p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~l 413 (1880)
.|..|+.++|.++...|.... ++++.+++.+...+.+.+..++..++.+++.++..+|+.. ..+.+
T Consensus 296 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l--------- 364 (588)
T 1b3u_A 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHL--------- 364 (588)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHT---------
T ss_pred HHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHHH---------
Confidence 488999999999998886533 5677777777777755443334455555555555544311 01111
Q ss_pred CHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccc
Q 000194 414 STTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFN 493 (1880)
Q Consensus 414 s~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~ 493 (1880)
T Consensus 365 -------------------------------------------------------------------------------- 364 (588)
T 1b3u_A 365 -------------------------------------------------------------------------------- 364 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCC
Q 000194 494 FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADA 573 (1880)
Q Consensus 494 ~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~ 573 (1880)
...+...+.+++++||.+|..++..+..... .......+++.|.. ...|+
T Consensus 365 ----------~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~-------------------~~~~~~~~lp~l~~-~~~d~ 414 (588)
T 1b3u_A 365 ----------LPLFLAQLKDECPEVRLNIISNLDCVNEVIG-------------------IRQLSQSLLPAIVE-LAEDA 414 (588)
T ss_dssp ----------HHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC-------------------HHHHHHHHHHHHHH-HHTCS
T ss_pred ----------HHHHHHHhCCCchHHHHHHHHHHHHHHHhcC-------------------HHHHHHHHHHHHHH-HhcCC
Confidence 1122233445566777776666555543110 01123444554444 35788
Q ss_pred ChhHHHHHHHhccCC-CCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcC
Q 000194 574 DVTVRHSIFSSLYGN-RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQS 652 (1880)
Q Consensus 574 ~~~vR~~~l~~l~~~-~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~ 652 (1880)
++.+|..++.++..- ..+......+.+++.++..++|++..||..|+..++.++...+... ....+...+..+..+
T Consensus 415 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~llp~l~~~~~~ 491 (588)
T 1b3u_A 415 KWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW---AHATIIPKVLAMSGD 491 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH---HHHHTHHHHHHTTTC
T ss_pred CchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh---HHHHHHHHHHHHhhC
Confidence 888888887776410 0001111124578888999999999999999999999987654321 122233334444445
Q ss_pred CCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHH
Q 000194 653 SADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMP 732 (1880)
Q Consensus 653 ~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p 732 (1880)
++...|..++.+++.+++.++.. .|.+.+++.++..+.++ ++.|+..++.+++.++...|..+. .+.++|
T Consensus 492 -~~~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~-----~~~Vr~~a~~~l~~l~~~~~~~~~--~~~~~p 561 (588)
T 1b3u_A 492 -PNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDP-----VANVRFNVAKSLQKIGPILDNSTL--QSEVKP 561 (588)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCS-----CHHHHHHHHHHHHHHGGGSCHHHH--HHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCC-----CchHHHHHHHHHHHHHHHhchhhh--HHHHHH
Confidence 67889999999999999876643 37788888999888875 789999999999999988776442 267888
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHH
Q 000194 733 LIVEALLDGAAVTKREVAVSTLGQVV 758 (1880)
Q Consensus 733 ~l~~~l~d~~~~~~r~~Al~~Lg~l~ 758 (1880)
.+.+.+.|. +.++|..|..+|+.+.
T Consensus 562 ~l~~l~~d~-d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 562 ILEKLTQDQ-DVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHTTCS-SHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCC-chhHHHHHHHHHHHhh
Confidence 888866665 6889999999998763
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-21 Score=260.73 Aligned_cols=563 Identities=15% Similarity=0.098 Sum_probs=382.4
Q ss_pred HHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH
Q 000194 73 RISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF 152 (1880)
Q Consensus 73 ~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~ 152 (1880)
.+.+.+++++...|..|+.++..+.... |. ......+.++|.... +++.+|+..+++++|.+...-|. .++++.
T Consensus 14 ~l~~~l~s~~~~~R~~A~~~l~~i~~~~-~~-~~~~~~l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~--~~~~~~ 87 (588)
T 1b3u_A 14 VLIDELRNEDVQLRLNSIKKLSTIALAL-GV-ERTRSELLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGG--PEYVHC 87 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHHS-CH-HHHHHTHHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTS--GGGGGG
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHHh-CH-HHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCc--HHHHHH
Confidence 3445677889999999999998886532 21 122334566776665 45789999999999988765221 123333
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCcc-chhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchh
Q 000194 153 QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTV-FNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR 231 (1880)
Q Consensus 153 ~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~-l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~ 231 (1880)
.++.+.. +..+.+...|.+|+..|+.++...|.. +.+ .+++.+.....++++.+|.+|+.+++.+.....
T Consensus 88 ll~~L~~-l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~---~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~----- 158 (588)
T 1b3u_A 88 LLPPLES-LATVEETVVRDKAVESLRAISHEHSPSDLEA---HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS----- 158 (588)
T ss_dssp GHHHHHH-HTTSSCHHHHHHHHHHHHHHHTTSCHHHHHH---THHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC-----
T ss_pred HHHHHHH-HHhCchHHHHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC-----
Confidence 3333322 224556678999999999999887752 222 345555566678889999999998887644322
Q ss_pred hHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhh
Q 000194 232 WRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHF 311 (1880)
Q Consensus 232 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~ 311 (1880)
......+++.+...+.++ ++++|.+++.+++.+.+..+.. .+...+++.+....++.+..||..++.+++.++..
T Consensus 159 --~~~~~~l~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 233 (588)
T 1b3u_A 159 --SAVKAELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 233 (588)
T ss_dssp --HHHHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Confidence 112345556555556665 4788999999999998754421 23455667777777888899999999999999876
Q ss_pred ChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHH
Q 000194 312 LRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNI 389 (1880)
Q Consensus 312 ~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~l 389 (1880)
.+... +.+.++|.+...+.++. .|..|..++|.++..+|.+ .+.+.+++.+...+.+....++..+..+++.+
T Consensus 234 ~~~~~---~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 308 (588)
T 1b3u_A 234 LPQED---LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 308 (588)
T ss_dssp SCHHH---HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCHHH---HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 65432 34567777777776543 4789999999999888764 34566777777777665444456777888888
Q ss_pred HHHhCCCch--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 000194 390 ARAMGPVME--PHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVM 467 (1880)
Q Consensus 390 a~~~g~~~~--~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~ 467 (1880)
+..+|+... ++++.++|.
T Consensus 309 ~~~~~~~~~~~~~~~~l~p~------------------------------------------------------------ 328 (588)
T 1b3u_A 309 CENLSADCRENVIMSQILPC------------------------------------------------------------ 328 (588)
T ss_dssp HHTSCTTTHHHHHHHTHHHH------------------------------------------------------------
T ss_pred HHHhChhhhhhHHHHHHHHH------------------------------------------------------------
Confidence 877765432 222222222
Q ss_pred CCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccc
Q 000194 468 NIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRS 547 (1880)
Q Consensus 468 ~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~ 547 (1880)
+..++.++++.||.+|+.++..+.....
T Consensus 329 ---------------------------------------l~~~l~d~~~~vR~~a~~~l~~l~~~~~------------- 356 (588)
T 1b3u_A 329 ---------------------------------------IKELVSDANQHVKSALASVIMGLSPILG------------- 356 (588)
T ss_dssp ---------------------------------------HHHHHTCSCHHHHHHHHTTGGGGHHHHC-------------
T ss_pred ---------------------------------------HHHHhcCCCHHHHHHHHHHHHHHHHHhh-------------
Confidence 1123445577788877766665542111
Q ss_pred cccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhc----cHhhHHHHHHHhCCCCHhHHHHHHHHH
Q 000194 548 NRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLA----QADCLSAIFAALNDEDFDVREYAISVA 623 (1880)
Q Consensus 548 ~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~----~~~~l~~L~~~l~D~~~~VR~~a~~~l 623 (1880)
.......+++.++ ..+.|++++||..++.+++. +...+. .+.+++.+...++|+++.+|..++..+
T Consensus 357 ------~~~~~~~l~p~l~-~~l~d~~~~Vr~~a~~~l~~---l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l 426 (588)
T 1b3u_A 357 ------KDNTIEHLLPLFL-AQLKDECPEVRLNIISNLDC---VNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYM 426 (588)
T ss_dssp ------HHHHHHHTHHHHH-HHHTCSCHHHHHHHHTTCHH---HHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred ------HhHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 0011233333333 34679999999999998852 211111 245678888889999999999999999
Q ss_pred HhhhcCCccc-ccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCCh
Q 000194 624 GRLSEKNPAY-VLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANN 702 (1880)
Q Consensus 624 ~~l~~~~p~~-v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~ 702 (1880)
+.++...+.. +.+.+- ..+..+..+ ++..+|+.|+.+++.+++..+.. .+.+.+++.+...+.++ +.
T Consensus 427 ~~l~~~~~~~~~~~~l~----~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~-----~~ 494 (588)
T 1b3u_A 427 PLLAGQLGVEFFDEKLN----SLCMAWLVD-HVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDP-----NY 494 (588)
T ss_dssp HHHHHHHCGGGCCHHHH----HHHHHGGGC-SSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCS-----CH
T ss_pred HHHHHHcCHHHHHHHHH----HHHHHHhcC-CcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCC-----CH
Confidence 9998755433 223332 233333334 57889999999999999876642 24566777776655543 78
Q ss_pred hHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHh
Q 000194 703 GIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKML 782 (1880)
Q Consensus 703 ~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L 782 (1880)
.++..++.+++.++...|.. .|.+.++|.+.+.+.|. +.++|..++.+|+.++...|.... .+.+++.+..++
T Consensus 495 ~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~----~~~~~p~l~~l~ 567 (588)
T 1b3u_A 495 LHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPILDNSTL----QSEVKPILEKLT 567 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGSCHHHH----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHHhchhhh----HHHHHHHHHHHc
Confidence 89999999999999877653 48889999999999887 578999999999999987765321 146777777754
Q ss_pred cCCCCHHHHHHHHHHHHHHc
Q 000194 783 NGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 783 ~~~~~~~vr~~~l~~lg~lg 802 (1880)
++.++.+|..+..+++.+.
T Consensus 568 -~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 568 -QDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp -TCSSHHHHHHHHHHHHHTT
T ss_pred -CCCchhHHHHHHHHHHHhh
Confidence 4668999999999988764
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6e-14 Score=195.44 Aligned_cols=671 Identities=10% Similarity=0.117 Sum_probs=389.3
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc-CCCcchhHHHHHHHHHHHHhh-cC--
Q 000194 110 KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-GDRVEYRRFAAVLILKEMAEN-AS-- 185 (1880)
Q Consensus 110 ~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~-~~~~~~~R~aA~~~l~~la~~-~p-- 185 (1880)
.+...|...+. .|.+++ |-+.|..+-.. ++|...++ +.+. ...+...|.+|...|+..... +.
T Consensus 6 ~l~~~L~~~~s--pd~~~r--Ae~~L~~~~~~-----p~~~~~L~----~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~ 72 (960)
T 1wa5_C 6 TVAKFLAESVI--ASTAKT--SERNLRQLETQ-----DGFGLTLL----HVIASTNLPLSTRLAGALFFKNFIKRKWVDE 72 (960)
T ss_dssp HHHHHHHHTTS--GGGHHH--HHHHHHHHHTS-----TTHHHHHH----HHHHCTTSCHHHHHHHHHHHHHHHHHHSBCS
T ss_pred HHHHHHHHhcC--CCHHHH--HHHHHHHhhcC-----CCHHHHHH----HHHhcCCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 45556666553 356666 77778776443 33433333 3332 234556788888888876644 32
Q ss_pred ---ccch-hchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHH
Q 000194 186 ---TVFN-VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSL 261 (1880)
Q Consensus 186 ---~~l~-~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al 261 (1880)
..+. ..-..|-..++.++.++...||...+.+++.+...- .+ .+| +.+++.+.+.+.+++ ...++|++
T Consensus 73 ~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d---~p---~~W-p~ll~~L~~~l~s~~-~~~~~~aL 144 (960)
T 1wa5_C 73 NGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSD---FP---DRW-PTLLSDLASRLSNDD-MVTNKGVL 144 (960)
T ss_dssp SSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH---ST---TTC-TTHHHHHHTTCCSSC-TTHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh---Cc---cch-hHHHHHHHHHhCCCC-HHHHHHHH
Confidence 1233 244456677888887777999999998888765431 11 234 568888888887764 56899999
Q ss_pred HHHHHHHHcch------h-------hhHHHHHHHHH---HHHHHhhcc--h-h------HHHHHHHHHhHhHhhhChhhH
Q 000194 262 LAVGELLRNTG------E-------FMMSRYREVAE---IVLRYLEHR--D-R------LVRLSITSLLPRIAHFLRDRF 316 (1880)
Q Consensus 262 ~~l~~ll~~~~------~-------~~~~~~~~i~~---~ll~~~~~~--~-~------~Vr~~~~~~i~~la~~~~~~f 316 (1880)
.++..+.+... + .+...+..+++ .+...++.. + . .++..++.++..+..+.-..+
T Consensus 145 ~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~ 224 (960)
T 1wa5_C 145 TVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEF 224 (960)
T ss_dssp HHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHH
Confidence 99999987321 1 12222222222 222223322 1 1 223335555555544443444
Q ss_pred HHHHHHHHHHHHHHhhcCC--------CC---------cchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCC-
Q 000194 317 VTNYLKICMNHILTVLRIP--------AE---------RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP- 378 (1880)
Q Consensus 317 ~~~yl~~~~~~Ll~~L~~~--------~~---------r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~- 378 (1880)
.+..+...++.+...|... ++ |..++.++..++...++.+.||++.+++.+...+.......
T Consensus 225 ~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~ 304 (960)
T 1wa5_C 225 FEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPK 304 (960)
T ss_dssp HHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTT
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 4556677778777776431 11 34678899999988888889999999988877774321111
Q ss_pred ----CchHHHHHHHHHHHhC--CCch--HHHHHHHH-HHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC
Q 000194 379 ----SLEALACVGNIARAMG--PVME--PHVRGLLD-IMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSK 449 (1880)
Q Consensus 379 ----~~~a~~~l~~la~~~g--~~~~--~~l~~ll~-~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~ 449 (1880)
...++++|..+++.-. ..|. |++..++. .++ ..+.
T Consensus 305 ~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~-------------------------------~~m~----- 348 (960)
T 1wa5_C 305 YDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIIL-------------------------------PNVT----- 348 (960)
T ss_dssp SHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHH-------------------------------HHHS-----
T ss_pred cHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhH-------------------------------HhcC-----
Confidence 1245666665543110 1121 33433331 111 1110
Q ss_pred CCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHh
Q 000194 450 SHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKL 529 (1880)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l 529 (1880)
+. . +|.+ .|.+ .-.+|+++... +++...+|++|+..+..+
T Consensus 349 --~~----------------~---~d~e---------------~w~~-dp~e~i~~d~e---~~d~~s~R~aa~~~L~~l 388 (960)
T 1wa5_C 349 --LR----------------E---EDVE---------------LFED-DPIEYIRRDLE---GSDTDTRRRACTDFLKEL 388 (960)
T ss_dssp --CC----------------G---GGTT---------------TTTT-CHHHHHHHHHH---C----CHHHHHHHHHHHH
T ss_pred --CC----------------H---HHHH---------------HHhc-CHHHHHHhccC---cccccCcHHHHHHHHHHH
Confidence 00 0 0000 0000 11234444321 233457888777655444
Q ss_pred hhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhC
Q 000194 530 VANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALN 609 (1880)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~ 609 (1880)
..... ..++..+++-+.. .+.... .-.
T Consensus 389 ~~~~~--------------------~~v~~~~l~~i~~-------------~l~~~~--------------------~~~ 415 (960)
T 1wa5_C 389 KEKNE--------------------VLVTNIFLAHMKG-------------FVDQYM--------------------SDP 415 (960)
T ss_dssp HHHCH--------------------HHHHHHHHHHHHH-------------HHHHHH--------------------C--
T ss_pred HHHcc--------------------hhHHHHHHHHHHH-------------HHHHhc--------------------cCc
Confidence 32110 1111111111100 000000 001
Q ss_pred CCCHhHHHHHHHHHHhhhcCC-----cc-------cccHHHHHHHHHHHHHHhcC-CCChHhHHHHHHHHHHHHHhCccc
Q 000194 610 DEDFDVREYAISVAGRLSEKN-----PA-------YVLPALRRHLIQLLTYLEQS-SADNKCREESAKLLGCLIRNCERL 676 (1880)
Q Consensus 610 D~~~~VR~~a~~~l~~l~~~~-----p~-------~v~p~l~~~l~~~l~~l~~~-~~~~~~r~~a~~~L~~l~~~~~~~ 676 (1880)
+++...|++|+.++|.++... |. .+.|.+.+.+ +..+.+. +..+..|..|++++|.+++...
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v---~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-- 490 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEI---APDLTSNNIPHIILRVDAIKYIYTFRNQLT-- 490 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHT---HHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHh---HHHhcCCCCCCceehHHHHHHHHHHHhhCC--
Confidence 345778899999999987542 11 2333333333 3334332 0268899999999999987642
Q ss_pred ccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhc-----------CCchhhhHHhHHHHHHHHHhcCC---
Q 000194 677 IRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG-----------GFGMRQYISELMPLIVEALLDGA--- 742 (1880)
Q Consensus 677 ~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~-----------g~~~~~~~~~l~p~l~~~l~d~~--- 742 (1880)
..++.++++.++..+.++ +..|+..++.|+..++... ...+.||++.+++.++..+....
T Consensus 491 -~~~l~~~l~~l~~~L~d~-----~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~ 564 (960)
T 1wa5_C 491 -KAQLIELMPILATFLQTD-----EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSP 564 (960)
T ss_dssp -HHHHHHHHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCH
T ss_pred -HHHHHHHHHHHHHHhCCC-----ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCC
Confidence 357889999999998864 6789999999999988742 35689999999999999987531
Q ss_pred -chhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHccc-CccchhhccccC
Q 000194 743 -AVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLN----GELVWSTRREVLKVLGIMGAL-DPHAHKRNQQLS 816 (1880)
Q Consensus 743 -~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~----~~~~~~vr~~~l~~lg~lgal-dp~~~~~~~~~~ 816 (1880)
.....+.+..+++.++...+..+.||. +.+++.|...+. ++.++..+..++.++|.+... .|-
T Consensus 565 ~~~~~~e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~--------- 633 (960)
T 1wa5_C 565 EKLAENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQ--------- 633 (960)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGG---------
T ss_pred CcccccHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcc---------
Confidence 112457889999999999988889985 567777776663 345677777777887776531 110
Q ss_pred CCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCC
Q 000194 817 GSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY 896 (1880)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~ 896 (1880)
.-.-|...+++.+..+|.... ....+.+.+.+..++... ..+.+|
T Consensus 634 ---------------------------------~~~~~~~~~~p~~~~iL~~~~-~~~~~~~~~i~~~l~~~~-~~~~~~ 678 (960)
T 1wa5_C 634 ---------------------------------NLPLLVDSMMPTFLTVFSEDI-QEFIPYVFQIIAFVVEQS-ATIPES 678 (960)
T ss_dssp ---------------------------------GHHHHHHHHHHHHHHHHHTTC-TTTHHHHHHHHHHHHHHC-SSCCTT
T ss_pred ---------------------------------hHHHHHHHHHHHHHHHHHhhh-HhhHHHHHHHHHHHHHhc-cCCCHH
Confidence 001134567778888886443 345677888888888776 567889
Q ss_pred cchhhHHHH--HHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHH
Q 000194 897 LPKVLPDLF--HTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLC 974 (1880)
Q Consensus 897 l~~iip~ll--~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~ 974 (1880)
+.+++|.++ ..++.. .....+...+..++....+.+.. ++.++..+........ + ...++.+++.++
T Consensus 679 ~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~-~-------~~~a~~ll~~i~ 747 (960)
T 1wa5_C 679 IKPLAQPLLAPNVWELK--GNIPAVTRLLKSFIKTDSSIFPD-LVPVLGIFQRLIASKA-Y-------EVHGFDLLEHIM 747 (960)
T ss_dssp TGGGHHHHTSGGGGCCT--TTHHHHHHHHHHHHHHHGGGCSC-SHHHHHHHHHHHTCTT-T-------HHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHhcCC--CCchhHHHHHHHHHHhChHHHHH-HHHHHHHHHHHhCCCc-c-------cchHHHHHHHHH
Confidence 999999887 544432 11222222232222222211111 1445555444433221 0 126889999999
Q ss_pred HHhhhh-hhccchhhHHHHHHhccc
Q 000194 975 LALNDE-FRTHLPVILPCCIQVLSD 998 (1880)
Q Consensus 975 ~~l~~~-f~~yl~~l~p~ll~~l~~ 998 (1880)
..++.+ |.||++.+++.++..++.
T Consensus 748 ~~~~~~~~~~yl~~i~~~l~~~l~~ 772 (960)
T 1wa5_C 748 LLIDMNRLRPYIKQIAVLLLQRLQN 772 (960)
T ss_dssp HHSCHHHHGGGHHHHHHHHHHGGGS
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999988 999999999999999965
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-14 Score=202.74 Aligned_cols=437 Identities=13% Similarity=0.118 Sum_probs=271.4
Q ss_pred hHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhc
Q 000194 614 DVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLL 693 (1880)
Q Consensus 614 ~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~ 693 (1880)
+.|..+..++..++...|..+.+.+...+.+.+......+.+++.++.++.+++.+++.+.....++++.+++ +++.+.
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~ 514 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIP 514 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcC
Confidence 5788888999999988886666666666666655432222578899999999999999887777788999888 555555
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchH
Q 000194 694 EGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQ 773 (1880)
Q Consensus 694 ~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ 773 (1880)
.. +.++.|+..++.++|.++...+... .|++.++|.++..| + ..++..|..+|..+++.++..+.||. +.
T Consensus 515 ~~---d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l-~---~~v~~~A~~al~~l~~~~~~~l~p~~--~~ 584 (971)
T 2x1g_F 515 YE---KLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL-N---SSMSAQATLGLKELCRDCQLQLKPYA--DP 584 (971)
T ss_dssp TT---TSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H---SSCHHHHHHHHHHHHHHCHHHHHHHH--HH
T ss_pred cc---ccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh-C---hHHHHHHHHHHHHHHHHHHHhccccH--HH
Confidence 21 1378899999999999998766543 79999999999998 4 46899999999999999888888885 78
Q ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcc
Q 000194 774 LLGLLLKMLNGE-LVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSED 852 (1880)
Q Consensus 774 ll~~Ll~~L~~~-~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 852 (1880)
+++.+..++... .+...+..++.++|.+...-|... .. + .-+
T Consensus 585 ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~-----------------------------~~-------~-~~~ 627 (971)
T 2x1g_F 585 LLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEE-----------------------------IP-------K-YLD 627 (971)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTH-----------------------------HH-------H-HHH
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHH-----------------------------HH-------H-HHH
Confidence 999999999764 357889999999988743111100 00 0 000
Q ss_pred cchHHHHHHHHHHhcCCC----hhhhHHHHHHHHHHHHHHhCC-------------CCCCCcchhhHHHHHHHhcC--Cc
Q 000194 853 YYSTVAINSLMRILRDPS----LASYHQKVVGSLMFIFKSMGL-------------GCVPYLPKVLPDLFHTVRTC--DD 913 (1880)
Q Consensus 853 ~~~~~vi~~Ll~~L~d~s----~~~~~~~~~~al~~i~~~~~~-------------~~~~~l~~iip~ll~~l~~~--~~ 913 (1880)
-+...++..+..+++.+. .......++..+..+++.++. .+.++.++++|.+...+... ++
T Consensus 628 ~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 707 (971)
T 2x1g_F 628 IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEI 707 (971)
T ss_dssp HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccH
Confidence 012334444444444332 111222456666777776653 34567899999999888754 44
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhh------hhccchh
Q 000194 914 YLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDE------FRTHLPV 987 (1880)
Q Consensus 914 ~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~------f~~yl~~ 987 (1880)
.+.+.++..++.++...+..+.||+|.+++.+...++... ...++.+++.++..+|.+ +...+..
T Consensus 708 ~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~---------~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~ 778 (971)
T 2x1g_F 708 DVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRC---------CAPTLEISKTAIVMFFKDEGCKPLMQQLLRE 778 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--C---------CHHHHHHHHHHHTTCCC-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCC---------chHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 6889999999999999999999999999999998877543 126888999998888764 4455555
Q ss_pred hHHHHHHhcccc---cccCchhhHHHHHHHHHHHhcchh------hh-hhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhc
Q 000194 988 ILPCCIQVLSDA---ERCNDYTYVLDILHTLEVFGGTLD------EH-MHLLLPALIRLFKVDAPVDIRRAAIETLTRLI 1057 (1880)
Q Consensus 988 l~p~ll~~l~~~---~~~~~~~~~~~il~~l~~~g~~~~------~~-~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~ 1057 (1880)
++..+++.|... +...+.++....+..+..+...-. ++ +..+++..+..+... .....++++..+..+.
T Consensus 779 ~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~-~~~~~~s~~~fl~~~i 857 (971)
T 2x1g_F 779 FIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLP-ESGAIRNSIQFLTHFV 857 (971)
T ss_dssp HHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSS-CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHH
Confidence 555566555432 111122333333333333222111 33 444555555555432 2223456666666643
Q ss_pred ccc----c----ccchhHhHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHHhccccccchh
Q 000194 1058 PRV----Q----VTGHISSLVHHLKLVLDG-KNDELRKDAVDALCCLAHALGEDFTIFIP 1108 (1880)
Q Consensus 1058 ~~~----~----~~~~~~~ii~~l~~~l~~-~~~~l~~~al~~L~~l~~~~g~~f~~fip 1108 (1880)
... . +..+.+.++..+...+.+ ......+.+.++|..|....|..+..++.
T Consensus 858 ~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~ 917 (971)
T 2x1g_F 858 MQSRNHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKYAAEMAVWMK 917 (971)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHCcHHHHHHHH
Confidence 321 0 122334444444443332 22344455556677777666655554443
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.71 E-value=5.9e-14 Score=196.95 Aligned_cols=402 Identities=15% Similarity=0.155 Sum_probs=262.8
Q ss_pred hHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhc
Q 000194 614 DVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLL 693 (1880)
Q Consensus 614 ~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~ 693 (1880)
+.|..+.+++..++...|..+.+.+.+.+.+.+.....+ .+++.++.++.++|.+++.+.....++++.+++.+. .+.
T Consensus 422 ~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~-~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~ 499 (963)
T 2x19_B 422 IYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEP-YSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RIS 499 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCS-CCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSC
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCC
Confidence 347777788888777666555555544444444222133 578899999999999999887777788888777443 333
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchH
Q 000194 694 EGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQ 773 (1880)
Q Consensus 694 ~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ 773 (1880)
+ .++.++..++.++|..+...+.. .+|++.+++.++..|.+ ..++..|+.+|..+++.++..+.||. ++
T Consensus 500 ~-----~~~~vr~~~~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~~~~~l~p~~--~~ 568 (963)
T 2x19_B 500 I-----SNVQLADTVMFTIGALSEWLADH-PVMINSVLPLVLHALGN---PELSVSSVSTLKKICRECKYDLPPYA--AN 568 (963)
T ss_dssp C-----CSHHHHHHHHHHHHHTHHHHHHC-HHHHTTTHHHHHHHTTC---GGGHHHHHHHHHHHHHHTGGGCTTTH--HH
T ss_pred C-----CcHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHHHHHHHhhH--HH
Confidence 3 26779999999999988765433 37899999999999965 57899999999999998888888985 78
Q ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcc
Q 000194 774 LLGLLLKMLNGE-LVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSED 852 (1880)
Q Consensus 774 ll~~Ll~~L~~~-~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 852 (1880)
+++.+..++... .+...+..++.++|.+...-| ... ...
T Consensus 569 il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-~~~---------------------------------------~~~ 608 (963)
T 2x19_B 569 IVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-VEE---------------------------------------ILK 608 (963)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-HHH---------------------------------------HHH
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-HHH---------------------------------------HHH
Confidence 999999988753 367889889999988642111 000 001
Q ss_pred cchHHHHHHHHHH----hcCC-Chh--hhHHHHHHHHHHHHHHhCCC----------------------CCCCcchhhHH
Q 000194 853 YYSTVAINSLMRI----LRDP-SLA--SYHQKVVGSLMFIFKSMGLG----------------------CVPYLPKVLPD 903 (1880)
Q Consensus 853 ~~~~~vi~~Ll~~----L~d~-s~~--~~~~~~~~al~~i~~~~~~~----------------------~~~~l~~iip~ 903 (1880)
|...+++.+... .+.+ +.. ......++++..+++.++.. +.++.+.++|.
T Consensus 609 -~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (963)
T 2x19_B 609 -NLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQL 687 (963)
T ss_dssp -HHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHH
Confidence 122333333332 2222 111 11224677788888887642 23467888888
Q ss_pred HHHHHhcC--CcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHH--Hhhh
Q 000194 904 LFHTVRTC--DDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCL--ALND 979 (1880)
Q Consensus 904 ll~~l~~~--~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~--~l~~ 979 (1880)
++..+... ++...+.++..++.++..++.++.||+|++++.+........ ...++.++..+.. ..++
T Consensus 688 ~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~---------~~~~l~l~~~li~~f~~~~ 758 (963)
T 2x19_B 688 IQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIP---------QASALDLTRQLVHIFAHEP 758 (963)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSC---------CHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCC---------ccHHHHHHHHHHHHhCCCc
Confidence 88877643 345788888999999988899999999999988876655422 1257888888887 3444
Q ss_pred hhhccchhhHHHHH----HhcccccccCchhhHHHHHHHHHHHhc----c-h-hhh-hhhhHHHHHHhhcCCCcHHHHHH
Q 000194 980 EFRTHLPVILPCCI----QVLSDAERCNDYTYVLDILHTLEVFGG----T-L-DEH-MHLLLPALIRLFKVDAPVDIRRA 1048 (1880)
Q Consensus 980 ~f~~yl~~l~p~ll----~~l~~~~~~~~~~~~~~il~~l~~~g~----~-~-~~~-~~~ilp~l~~~l~~~~~~~vr~~ 1048 (1880)
.+.++++.++..++ ..+.+ +....+.+....+..+..+.. . + .+. +..+++.++..+.. ....+.+.
T Consensus 759 ~~~~~~~~~l~~~~~~~l~~~~~-~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~-~~~~~~~~ 836 (963)
T 2x19_B 759 AHFPPIEALFLLVTSVTLTLFQQ-GPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKF-PEAPTVKA 836 (963)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHH-CTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTC-SCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhh-CcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCC-CCHHHHHH
Confidence 45666655544444 34432 111123333333333322211 1 1 233 56667777777753 46677888
Q ss_pred HHHHHHhhccccc--------ccchhHhHHHHHHHhhCCC
Q 000194 1049 AIETLTRLIPRVQ--------VTGHISSLVHHLKLVLDGK 1080 (1880)
Q Consensus 1049 ai~~l~~l~~~~~--------~~~~~~~ii~~l~~~l~~~ 1080 (1880)
++..+..+..... +.++...++..+...+.+.
T Consensus 837 ~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 876 (963)
T 2x19_B 837 SCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQ 876 (963)
T ss_dssp HHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999998875421 3456677777777777643
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-12 Score=178.66 Aligned_cols=735 Identities=10% Similarity=0.096 Sum_probs=412.4
Q ss_pred HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhccc-CCChHHHHHHHHHHHHHhhhC-C----
Q 000194 70 LYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEV-KRDREILVLASKVLGHLARAG-G---- 143 (1880)
Q Consensus 70 l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~-~~d~~v~~~aa~~l~~L~~~~-g---- 143 (1880)
|.+.+.. ..+++.+.| |-..++.+-.. ..|..+|..++.. +.+.+++..|+-.|.+.+... .
T Consensus 7 l~~~L~~-~~spd~~~r--Ae~~L~~~~~~---------p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~ 74 (960)
T 1wa5_C 7 VAKFLAE-SVIASTAKT--SERNLRQLETQ---------DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENG 74 (960)
T ss_dssp HHHHHHH-TTSGGGHHH--HHHHHHHHHTS---------TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSS
T ss_pred HHHHHHH-hcCCCHHHH--HHHHHHHhhcC---------CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCccc
Confidence 4444444 335666666 55555555211 1366677777632 346899999999999887641 1
Q ss_pred --CCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh-cCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 000194 144 --AMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN-ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRA 220 (1880)
Q Consensus 144 --~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~-~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~ 220 (1880)
...++-....=..+++.+..+. ...|..+..++..++.. .| ..-+++++.++..+.++++..+.++..++..
T Consensus 75 ~~~l~~~~k~~ik~~ll~~l~~~~-~~ir~~l~~~ia~ia~~d~p----~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~ 149 (960)
T 1wa5_C 75 NHLLPANNVELIKKEIVPLMISLP-NNLQVQIGEAISSIADSDFP----DRWPTLLSDLASRLSNDDMVTNKGVLTVAHS 149 (960)
T ss_dssp CBSSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhhCc----cchhHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 2334444444445666665433 56778888888998876 44 2457888999999988888899999999888
Q ss_pred HHHHHhh--hchhhH-------HHHHH---HHHHHHHhhccCCCC--h------hHHHHHHHHHHHHHH-cchhhhHHHH
Q 000194 221 CLRVIEK--RETRWR-------VQWYY---RMFEATQDGLGRNAP--V------HSIHGSLLAVGELLR-NTGEFMMSRY 279 (1880)
Q Consensus 221 ~~~~i~~--r~~~~~-------~~~~~---~~l~~~~~~l~~~~~--~------~~~~~al~~l~~ll~-~~~~~~~~~~ 279 (1880)
+++.... +....+ ...+. .++..+...+.++.. . +..+.++.++..+.. ..++++..++
T Consensus 150 i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~ 229 (960)
T 1wa5_C 150 IFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI 229 (960)
T ss_dssp HHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 7664321 100111 11222 222233334554321 1 112223334433322 2234555566
Q ss_pred HHHHHHHHHHhhc-----------ch----hHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC----CCC---
Q 000194 280 REVAEIVLRYLEH-----------RD----RLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI----PAE--- 337 (1880)
Q Consensus 280 ~~i~~~ll~~~~~-----------~~----~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~----~~~--- 337 (1880)
...++.++..+.. ++ ..+|+.++.++-.++..-++.|. .|++.++..+...+.+ ...
T Consensus 230 ~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 308 (960)
T 1wa5_C 230 QVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFG-PMINEFIQITWNLLTSISNQPKYDIL 308 (960)
T ss_dssp HHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHCCSCTTSHHH
T ss_pred HHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCcCcHHH
Confidence 6666655554422 11 25788999999998877777774 5888888888887752 122
Q ss_pred cchHHHHHHHHHhhch--hhhh--hhhhHHH-HHHHHhhcC-------CCCC----------------CCchHHHHHHHH
Q 000194 338 RDSGFIALGEMAGALD--GELF--HYLPTIT-SHLREAIAP-------RRGK----------------PSLEALACVGNI 389 (1880)
Q Consensus 338 r~~a~~alg~la~~v~--~~~~--p~l~~i~-~~l~~~l~~-------~~~~----------------~~~~a~~~l~~l 389 (1880)
+..|+.-+..++..-. ..+. ++++.++ ..+...+.- +..+ ++..+..++..+
T Consensus 309 ~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l 388 (960)
T 1wa5_C 309 VSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKEL 388 (960)
T ss_dssp HHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHH
Confidence 3456666655543221 1233 7788777 455555421 0111 112344555555
Q ss_pred HHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCC
Q 000194 390 ARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNI 469 (1880)
Q Consensus 390 a~~~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 469 (1880)
+..+|+.+.|.+-..+..+++. . ...+
T Consensus 389 ~~~~~~~v~~~~l~~i~~~l~~----------------------------------~-~~~~------------------ 415 (960)
T 1wa5_C 389 KEKNEVLVTNIFLAHMKGFVDQ----------------------------------Y-MSDP------------------ 415 (960)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHH----------------------------------H-HC--------------------
T ss_pred HHHcchhHHHHHHHHHHHHHHH----------------------------------h-ccCc------------------
Confidence 5554432222111111111110 0 0000
Q ss_pred CccccccCCchhHHHHHHhhcccccC------CC-------cchhhHHHHHhhhccCC---ChHHHHHHHHHHHHhhhcc
Q 000194 470 PQQVSDLNGSAPVQLALQTLARFNFK------GH-------DLLEFARDSVVLYLDDE---DKATRKDAALCCCKLVANS 533 (1880)
Q Consensus 470 ~~~~~~~~~~~~~~~Al~~L~~~~~~------~~-------~l~~~v~~~~~~~l~~~---~~~VR~aAa~~~~~l~~~~ 533 (1880)
..+| ..+..|+.++|.+.-. |. .+.+|+...+.+.+.++ ++-||.+|+.+++++..-
T Consensus 416 ~~~w------~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~- 488 (960)
T 1wa5_C 416 SKNW------KFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ- 488 (960)
T ss_dssp --CH------HHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG-
T ss_pred chhH------HHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhh-
Confidence 0001 1122344444433100 10 34456556666766666 788888777666553310
Q ss_pred CCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCH
Q 000194 534 FSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDF 613 (1880)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~ 613 (1880)
. ..+.+ ..+++.++.++.|++.
T Consensus 489 ~-------------------~~~~l---------------------------------------~~~l~~l~~~L~d~~~ 510 (960)
T 1wa5_C 489 L-------------------TKAQL---------------------------------------IELMPILATFLQTDEY 510 (960)
T ss_dssp S-------------------CHHHH---------------------------------------HHHHHHHHHHTTCSCH
T ss_pred C-------------------CHHHH---------------------------------------HHHHHHHHHHhCCCCh
Confidence 0 00111 1345666667778888
Q ss_pred hHHHHHHHHHHhhhcC-----------CcccccHHHHHHHHHHHHHHhcCCC-C---hHhHHHHHHHHHHHHHhCccccc
Q 000194 614 DVREYAISVAGRLSEK-----------NPAYVLPALRRHLIQLLTYLEQSSA-D---NKCREESAKLLGCLIRNCERLIR 678 (1880)
Q Consensus 614 ~VR~~a~~~l~~l~~~-----------~p~~v~p~l~~~l~~~l~~l~~~~~-~---~~~r~~a~~~L~~l~~~~~~~~~ 678 (1880)
.||..|..++.++++. .+..+.|++..++..++..+... + . ....+.+..+++.++...++.+.
T Consensus 511 ~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~-~~~~~~~~~~e~l~~al~~vv~~~~~~~~ 589 (960)
T 1wa5_C 511 VVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKH-GSSPEKLAENEFLMRSIFRVLQTSEDSIQ 589 (960)
T ss_dssp HHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTT-CCCHHHHTSCHHHHHHHHHHHHHHTTTTG
T ss_pred hHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhc-cCCCCcccccHHHHHHHHHHHHHHHHhhh
Confidence 8999999999998763 23457788888777666655542 1 0 11346788999999999999999
Q ss_pred CchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcC-CchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 000194 679 PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG-FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1880)
Q Consensus 679 py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g-~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l 757 (1880)
||++.+++.+...+........++.+...++.+++.++...+ +.+.++.+.++|.+...|+.. ..+....++..++.+
T Consensus 590 p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~-~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 590 PLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED-IQEFIPYVFQIIAFV 668 (960)
T ss_dssp GGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT-CTTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhh-hHhhHHHHHHHHHHH
Confidence 999999999988876521112366777788999999998744 578889999999999999743 345677788888888
Q ss_pred HhhcCcccccCCcchHHHHHHH--HHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCC
Q 000194 758 VQSTGYVITPYNEYPQLLGLLL--KMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQP 835 (1880)
Q Consensus 758 ~~~~~~~i~p~~~~p~ll~~Ll--~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1880)
.... ..+.||. +.+++.+. ..++... .-..++++++... .+..
T Consensus 669 ~~~~-~~~~~~~--~~~~~~l~~~~~~~~~~---~~~~~~~~L~~~~------~~~~----------------------- 713 (960)
T 1wa5_C 669 VEQS-ATIPESI--KPLAQPLLAPNVWELKG---NIPAVTRLLKSFI------KTDS----------------------- 713 (960)
T ss_dssp HHHC-SSCCTTT--GGGHHHHTSGGGGCCTT---THHHHHHHHHHHH------HHHG-----------------------
T ss_pred HHhc-cCCCHHH--HHHHHHHcCHHHhcCCC---CchhHHHHHHHHH------HhCh-----------------------
Confidence 8776 4455653 56777776 5554321 1122333332211 0000
Q ss_pred CcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCC-CCCCcchhhHHHHHHHhcCC-c
Q 000194 836 MDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG-CVPYLPKVLPDLFHTVRTCD-D 913 (1880)
Q Consensus 836 ~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~-~~~~l~~iip~ll~~l~~~~-~ 913 (1880)
+ .+. . ...++..+.+.+.+... ...++..+..|+..++.. +.||++.+++.++..+.... +
T Consensus 714 -~----~~~----~-----~~~~l~~~~~~~~~~~~---~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~ 776 (960)
T 1wa5_C 714 -S----IFP----D-----LVPVLGIFQRLIASKAY---EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTE 776 (960)
T ss_dssp -G----GCS----C-----SHHHHHHHHHHHTCTTT---HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCH
T ss_pred -H----HHH----H-----HHHHHHHHHHHhCCCcc---cchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcH
Confidence 0 000 0 13344445555555542 246888999999999888 89999999999999887652 3
Q ss_pred chhHHHHHHHHHHHHHHHHh-HHHhHH-----HHHHHHHHhhc----CCCCCcccccccchhHHHHHHHHHH--Hhhhhh
Q 000194 914 YLKDYITWKLGTLVSIVRQH-IRKYLQ-----ELFSLISELWS----SFSLPATNRTYRGLPVLHLVQQLCL--ALNDEF 981 (1880)
Q Consensus 914 ~~~~~~~~~l~~lv~~~~~~-i~~y~~-----~i~~~i~~~~~----~~~~~~~~~~~~~~~~l~~i~~l~~--~l~~~f 981 (1880)
..+..++..++.++-..++. +.+.++ ..+.++...|- ....+ ..+...+++++.-+.. ..+..+
T Consensus 777 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~----~erk~~~~gl~~ll~~~~~~~~~~ 852 (960)
T 1wa5_C 777 RYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNL----LDRKIALIGVLNMVINGQFFQSKY 852 (960)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSH----HHHHHHHHHHHHHHHSCHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCH----HHHHHHHHHHHHHHhcccccchhH
Confidence 34433333444444322322 223332 11233333332 11100 1123233433332222 124456
Q ss_pred hccchhhHHHHHHhccc
Q 000194 982 RTHLPVILPCCIQVLSD 998 (1880)
Q Consensus 982 ~~yl~~l~p~ll~~l~~ 998 (1880)
.+.++.++..++.++..
T Consensus 853 ~~~~~~~~~~i~~l~~~ 869 (960)
T 1wa5_C 853 PTLISSTMNSIIETASS 869 (960)
T ss_dssp GGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 66777777777777754
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-12 Score=181.83 Aligned_cols=793 Identities=9% Similarity=0.019 Sum_probs=411.2
Q ss_pred HHHHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhh-cCCChhhhhhHHHHHhHhhccc
Q 000194 23 LDALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLL-ESNDAAENLGALRAIDELIDVA 100 (1880)
Q Consensus 23 ~~~~~~l~~~l~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~-~s~~~~~r~~~i~ai~~Li~~~ 100 (1880)
...+.++++.+.+++.+.++ |-..|..+ .-+++ .+..+ ..++ .+.+...|..|...+...+...
T Consensus 6 ~~~l~~~l~~~~~~d~~~r~~A~~~L~~~------~~~p~----~w~~~----~~lL~~~~~~~vr~~aa~~L~~~i~~~ 71 (971)
T 2x1g_F 6 IARLEEAVVSFYRSNSQNQAITHEWLTDA------EASPQ----AWQFS----WQLMQLGKSQEVQFFGAITLHSKLMKH 71 (971)
T ss_dssp -----CTHHHHHTSTTTC----CHHHHHT------TTSTH----HHHHH----HHHTCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHH------HcCHH----HHHHH----HHHHhcCCcHHHHHHHHHHHHHHHHcc
Confidence 34466777777676544443 43222221 12232 22212 2333 3567788999999998887653
Q ss_pred cCc-chhHHHHHHHHHHhhccc--CCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhh-hcCCCcchhHHHHHHH
Q 000194 101 LGE-NASKVSKFSNYMRTVFEV--KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDW-LRGDRVEYRRFAAVLI 176 (1880)
Q Consensus 101 ~~~-~~~~~~~~~~~L~~~l~~--~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~-l~~~~~~~~R~aA~~~ 176 (1880)
-.. +......+-+++...+-. .+...++...+.++..++......|+++++..+..+-.- +..-.++..+..++.+
T Consensus 72 w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~i 151 (971)
T 2x1g_F 72 WHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEV 151 (971)
T ss_dssp GGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHhccccccCCCHHHHHHHHHH
Confidence 221 111112222333333321 225789999999999999873227888877666543210 0000144678899999
Q ss_pred HHHHHhhc------------CccchhchHHHHHHHHHHhcCCc-h-------hHHHHHHHHHHHHHHH--HhhhchhhHH
Q 000194 177 LKEMAENA------------STVFNVHVAEFVDAIWVALRDPT-L-------AVRERAVEALRACLRV--IEKRETRWRV 234 (1880)
Q Consensus 177 l~~la~~~------------p~~l~~~l~~i~~~i~~~l~D~~-~-------~VR~aA~~al~~~~~~--i~~r~~~~~~ 234 (1880)
|+.+++.. ...+..+++.+++.+...+.+.. + .++.+|.++++.++.. +... ...
T Consensus 152 L~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---~~~ 228 (971)
T 2x1g_F 152 LTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---GCV 228 (971)
T ss_dssp HHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG---GHH
T ss_pred HHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc---ccc
Confidence 99888631 12355677778777766665332 1 6888899888877652 3211 223
Q ss_pred HHHHHHHHHHHh-hc------cC----CCChhHHHHHHHHHHHHHHcch-hhhHHHHHHHHHHHHHH-------hhcch-
Q 000194 235 QWYYRMFEATQD-GL------GR----NAPVHSIHGSLLAVGELLRNTG-EFMMSRYREVAEIVLRY-------LEHRD- 294 (1880)
Q Consensus 235 ~~~~~~l~~~~~-~l------~~----~~~~~~~~~al~~l~~ll~~~~-~~~~~~~~~i~~~ll~~-------~~~~~- 294 (1880)
.+++.++. +.. -+ ++ .++.+.+.+|+.++.+++.... +...+.+..+++.++.. ...++
T Consensus 229 ~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~ 307 (971)
T 2x1g_F 229 TITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKREN 307 (971)
T ss_dssp HHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSC
T ss_pred cHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccc
Confidence 44444444 310 01 00 0124678899999999998422 11223334444433321 12334
Q ss_pred --hHHHHHHHHHhHhHhhhChhhHH----------HHHHHHHHHHHHHhhcC----C-C--CcchHHHHHHHHHhhc---
Q 000194 295 --RLVRLSITSLLPRIAHFLRDRFV----------TNYLKICMNHILTVLRI----P-A--ERDSGFIALGEMAGAL--- 352 (1880)
Q Consensus 295 --~~Vr~~~~~~i~~la~~~~~~f~----------~~yl~~~~~~Ll~~L~~----~-~--~r~~a~~alg~la~~v--- 352 (1880)
..+...++.++..++......|. ..++..+++.++..... . . .+..++.....++...
T Consensus 308 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~ 387 (971)
T 2x1g_F 308 DNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAM 387 (971)
T ss_dssp SCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 26677777777777754444333 14667888888877643 2 2 2456666666666532
Q ss_pred ---------hhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000194 353 ---------DGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQ 423 (1880)
Q Consensus 353 ---------~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~ 423 (1880)
...+.|+++.+++.+...+.-+... . ... ..+.-.+-.... .....+++..
T Consensus 388 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~---~-----------~~~-~d~~e~~~f~~~-----R~~~~~~l~~ 447 (971)
T 2x1g_F 388 SNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEK---S-----------LAK-WSSDDLECFRCY-----RQDISDTFMY 447 (971)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHTSCCCTT---T-----------TSC-SCHHHHHHHHHH-----HHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcc---c-----------ccc-cCHhHHHHHHHH-----HHHHHHHHHH
Confidence 1124567777777766665211110 0 000 000000000000 0001111111
Q ss_pred HHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhH
Q 000194 424 ITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFA 503 (1880)
Q Consensus 424 i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v 503 (1880)
++...+ ..+.+. +.+++
T Consensus 448 ~~~~~~---~~~l~~------------------------------------------------------------~~~~l 464 (971)
T 2x1g_F 448 CYDVLN---DYILEI------------------------------------------------------------LAAML 464 (971)
T ss_dssp HHTTCT---THHHHH------------------------------------------------------------HHHHH
T ss_pred HHHHHh---HHHHHH------------------------------------------------------------HHHHH
Confidence 111111 000000 01122
Q ss_pred HHHHhhhcc-CCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhc--CCChhHHHH
Q 000194 504 RDSVVLYLD-DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVA--DADVTVRHS 580 (1880)
Q Consensus 504 ~~~~~~~l~-~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~--d~~~~vR~~ 580 (1880)
...+..+-. ..++..|.+|..+++.+...... .....+..+++ ++. .+. |+.+.||..
T Consensus 465 ~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~-----------------~~~~~l~~l~~-~l~-~l~~~d~~~~vr~~ 525 (971)
T 2x1g_F 465 DEAIADLQRHPTHWTKLEACIYSFQSVAEHFGG-----------------EEKRQIPRLMR-VLA-EIPYEKLNVKLLGT 525 (971)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------------------CHHHHHHH-HHH-HSCTTTSCHHHHHH
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHHHhhcCh-----------------hhhHHHHHHHH-HHH-hcCccccCHHHHHH
Confidence 222111111 14566777776665554321110 00123444444 222 223 678999999
Q ss_pred HHHhccCCCCcchhhc-----cHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCC
Q 000194 581 IFSSLYGNRGFDDFLA-----QADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSAD 655 (1880)
Q Consensus 581 ~l~~l~~~~~fd~~L~-----~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~ 655 (1880)
++..++ +|..++. -+.+++.++.++ | +.|+..|..++.++++.++..+.|++..++..++..+.....+
T Consensus 526 a~~~l~---~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~ 599 (971)
T 2x1g_F 526 ALETMG---SYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMK 599 (971)
T ss_dssp HHHHHH---HTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHH---HHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCC
Confidence 998885 3333332 134677888888 4 7899999999999999888778898888776666656543134
Q ss_pred hHhHHHHHHHHHHHHHhCc-ccccCchHHHHHHHHHHhccCCCCCC-ChhHHHHHHH---HHHHHHHhc-----------
Q 000194 656 NKCREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINA-NNGIISGVLV---TVGDLARVG----------- 719 (1880)
Q Consensus 656 ~~~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~-~~~v~~~~~~---~l~~La~~~----------- 719 (1880)
...+....++++.++...+ ....||+..+++.++..+..-..... +..-...+.. +++.+....
T Consensus 600 ~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~ 679 (971)
T 2x1g_F 600 NSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQ 679 (971)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccc
Confidence 6778889999999998764 66778888888877776553110001 2222233333 333333322
Q ss_pred --CCchhhhHHhHHHHHHHHHhcC-CchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHH
Q 000194 720 --GFGMRQYISELMPLIVEALLDG-AAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLK 796 (1880)
Q Consensus 720 --g~~~~~~~~~l~p~l~~~l~d~-~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~ 796 (1880)
.+.+.++.++++|.+...+.+. .+..+.+.++..++.++...|..+.|| .|.+++.++..+++... ..++.
T Consensus 680 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~--l~~~~~~l~~~~~~~~~----~~~l~ 753 (971)
T 2x1g_F 680 PIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPM--LQDLCLFIVASFQTRCC----APTLE 753 (971)
T ss_dssp ----CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTH--HHHHHHHHHHHCC--CC----HHHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhcccc--HHHHHHHHHHHHhcCCc----hHHHH
Confidence 2357889999999999988753 355788999999999999888888898 58999999988865433 12455
Q ss_pred HHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCC--Chhhh
Q 000194 797 VLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDP--SLASY 874 (1880)
Q Consensus 797 ~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~--s~~~~ 874 (1880)
++|.+.. -+. . + ..+. +...+.+ ..++...+.+|... .....
T Consensus 754 l~~~~i~--~~~--------~----------~-----~~~~----------~~l~~~~-~~~~~~~~~~l~~~~~~~~~~ 797 (971)
T 2x1g_F 754 ISKTAIV--MFF--------K----------D-----EGCK----------PLMQQLL-REFIQHSFKLFESTPEQNFSN 797 (971)
T ss_dssp HHHHHHT--TCC--------C------------------------------HHHHHHH-HHHHHHHHHHHTSCTTTHHHH
T ss_pred HHHHHHH--HhC--------C----------C-----cchH----------HHHHHHH-HHHHHHHHHHHhcccccCCcc
Confidence 5544321 010 0 0 0000 0011112 22334445555543 11112
Q ss_pred HHHHHHHHH----HHHHHhCCCC--CCC-cchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHH------HHhHHHhHHHH
Q 000194 875 HQKVVGSLM----FIFKSMGLGC--VPY-LPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV------RQHIRKYLQEL 941 (1880)
Q Consensus 875 ~~~~~~al~----~i~~~~~~~~--~~~-l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~------~~~i~~y~~~i 941 (1880)
++.+.++.. .+++.....+ .|. ++.+++..+..+...++.....++..+..++..- ++.+.++.+.+
T Consensus 798 ~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~l 877 (971)
T 2x1g_F 798 ISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQT 877 (971)
T ss_dssp THHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhHHHH
Confidence 344545544 4444332222 266 7888888888887655544445555666655542 22333444555
Q ss_pred HHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhh
Q 000194 942 FSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVI 988 (1880)
Q Consensus 942 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l 988 (1880)
+..+....... .|.+ .. ..+..++..+....++++++|+...
T Consensus 878 ~~~l~~~~~~~-~~~s---~~-~~~a~~l~~l~~~~~~~~~~~l~~~ 919 (971)
T 2x1g_F 878 LYTAMMCVGYL-TPRS---QV-DKFADILLAMNRKYAAEMAVWMKSL 919 (971)
T ss_dssp HHHHHHHHHTT-SCGG---GG-GGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccc-CChh---HH-HHHHHHHHHHHHHCcHHHHHHHHHH
Confidence 54444332211 1211 12 1455667777777777777776543
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.65 E-value=7.8e-12 Score=175.34 Aligned_cols=747 Identities=11% Similarity=0.021 Sum_probs=419.4
Q ss_pred HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC-CCCchh
Q 000194 70 LYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG-GAMTAD 148 (1880)
Q Consensus 70 l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~-g~~~~~ 148 (1880)
+.+.+..+..+++...|..|-..+..+-.-+ .+..++..++..+.+.+++-.|+.+|.+.+... .....+
T Consensus 26 l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p---------~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~ 96 (963)
T 2x19_B 26 VEKALHQLYYDPNIENKNLAQKWLMQAQVSP---------QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTD 96 (963)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHST---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCH---------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHH
Confidence 4555555566678888887777777764332 133455556655668899999999999888753 334444
Q ss_pred HHHHHHHHHHhhhcCC--CcchhHHHHHHHHHHHHhh-cCccchhchHHHHHHHHHHhcC-----CchhHHHHHHHHHHH
Q 000194 149 EVEFQVKMALDWLRGD--RVEYRRFAAVLILKEMAEN-ASTVFNVHVAEFVDAIWVALRD-----PTLAVRERAVEALRA 220 (1880)
Q Consensus 149 ~v~~~~~~~~~~l~~~--~~~~~R~aA~~~l~~la~~-~p~~l~~~l~~i~~~i~~~l~D-----~~~~VR~aA~~al~~ 220 (1880)
-.+..=..+++++.+. .+...|.....++..++.. .|.. -+++++.+...++. +++..++.+...|..
T Consensus 97 ~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~----Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~ 172 (963)
T 2x19_B 97 QYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDA----WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTV 172 (963)
T ss_dssp GHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTT----STTHHHHHHHHHCC------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccc----cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHh
Confidence 4444455566666431 2456777778888888876 3432 24666777777765 466678888888887
Q ss_pred HHHHHhhhch---------hhHHHHHHHHHHHHHhhccCCCC-hhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh
Q 000194 221 CLRVIEKRET---------RWRVQWYYRMFEATQDGLGRNAP-VHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL 290 (1880)
Q Consensus 221 ~~~~i~~r~~---------~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~ 290 (1880)
+.+.+..+.. ..-..+.+.+++.+...+.+... ......++.++...+....... ....+++.++..+
T Consensus 173 l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~--~~~~ll~~l~~~l 250 (963)
T 2x19_B 173 LPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQ--DCEALIQAAFAAL 250 (963)
T ss_dssp HHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGG--GTHHHHHHHHHHT
T ss_pred CHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcc--cchHHHHHHHHHh
Confidence 7754422210 00012355566555555544322 1356666666654444111111 1134555566555
Q ss_pred hcchhHHHHHHHHHhHhHhhhC-hhhHHHHHHHHHHHHHHHh-------hcCCCC--cchHHHHHHHHHhhchhhhh---
Q 000194 291 EHRDRLVRLSITSLLPRIAHFL-RDRFVTNYLKICMNHILTV-------LRIPAE--RDSGFIALGEMAGALDGELF--- 357 (1880)
Q Consensus 291 ~~~~~~Vr~~~~~~i~~la~~~-~~~f~~~yl~~~~~~Ll~~-------L~~~~~--r~~a~~alg~la~~v~~~~~--- 357 (1880)
.++.+|.+++.++..+.... +..+. .++..+++.++.. +...+. ....+..+..++......+.
T Consensus 251 --~~~~~~~~a~~~l~~i~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~ 327 (963)
T 2x19_B 251 --QDSELFDSSVEAIVNAISQPDAQRYV-NTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQV 327 (963)
T ss_dssp --TSTTTHHHHHHHHHHHHTCTTGGGCH-HHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred --CCchHHHHHHHHHHHHHcccccccCH-HHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCc
Confidence 35778999999999887532 22222 2333444433322 222111 12233333344333222222
Q ss_pred ---hhhhHHHHHHHHhhcC-----CCCCCCchHHHHHHHHHHHhCC-----------CchHHHHHHHHHHHhcC-C-CHH
Q 000194 358 ---HYLPTITSHLREAIAP-----RRGKPSLEALACVGNIARAMGP-----------VMEPHVRGLLDIMFSAG-L-STT 416 (1880)
Q Consensus 358 ---p~l~~i~~~l~~~l~~-----~~~~~~~~a~~~l~~la~~~g~-----------~~~~~l~~ll~~l~~~~-l-s~~ 416 (1880)
+++..+++.+...... ...+....++.+|..+++.... .+.|++..+++.++..- . ++.
T Consensus 328 ~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~ 407 (963)
T 2x19_B 328 EHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDE 407 (963)
T ss_dssp GGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred cchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 4455566666655543 1223345788899988884321 12334444433333210 0 000
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCc-hhHHHHHHhhccc-cc
Q 000194 417 LVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGS-APVQLALQTLARF-NF 494 (1880)
Q Consensus 417 l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Al~~L~~~-~~ 494 (1880)
..+ +.. .++.++- +....+.++|..+ ..
T Consensus 408 ~~~------------------------------------------------~~~--~de~~~~~~~r~~~~~~L~~~~~~ 437 (963)
T 2x19_B 408 EYG------------------------------------------------FWS--SDEKEQFRIYRVDISDTLMYVYEM 437 (963)
T ss_dssp HHH------------------------------------------------TSC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc------------------------------------------------CCC--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000 0000000 0011122222221 00
Q ss_pred CCCcchhhHHHHHhhhc----cCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHh
Q 000194 495 KGHDLLEFARDSVVLYL----DDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAV 570 (1880)
Q Consensus 495 ~~~~l~~~v~~~~~~~l----~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~ 570 (1880)
.|....+.+.+.+...+ ++.++..|.+|..+++.+...... ...+.+..+++.+. .+
T Consensus 438 ~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~-----------------~~~~~l~~l~~~l~--~l 498 (963)
T 2x19_B 438 LGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDV-----------------NYSDVVPGLIGLIP--RI 498 (963)
T ss_dssp HTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCS-----------------SCCSHHHHHHHHGG--GS
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCc-----------------hhhHHHHHHHHHHH--hC
Confidence 12112222333333333 556788888887777665532110 01123445555332 34
Q ss_pred cCCChhHHHHHHHhccCCCCcchhhc-c----HhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHH
Q 000194 571 ADADVTVRHSIFSSLYGNRGFDDFLA-Q----ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQL 645 (1880)
Q Consensus 571 ~d~~~~vR~~~l~~l~~~~~fd~~L~-~----~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~ 645 (1880)
.++.+.||..++..++ +|..++. . +.+++.++..++| +.|+..|..++.++++.++..+.|++..++..+
T Consensus 499 ~~~~~~vr~~~~~~l~---~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l 573 (963)
T 2x19_B 499 SISNVQLADTVMFTIG---ALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVS 573 (963)
T ss_dssp CCCSHHHHHHHHHHHH---HTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH---HHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5678899999998885 3433332 1 3467888888877 789999999999999988888889998876655
Q ss_pred HHHHhcCCCChHhHHHHHHHHHHHHHhCc-ccccCchHHHHHHHHHHhccCCCCCCChhHH---HHHHHHHHHHHHhcCC
Q 000194 646 LTYLEQSSADNKCREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANNGII---SGVLVTVGDLARVGGF 721 (1880)
Q Consensus 646 l~~l~~~~~~~~~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~~v~---~~~~~~l~~La~~~g~ 721 (1880)
...+.....+.+.+....++++.++...+ +...||+..+++.+...+..-.....++..+ ...+.+++.+++..+.
T Consensus 574 ~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~ 653 (963)
T 2x19_B 574 QDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDI 653 (963)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55555421346778889999999998876 7788999999999888875311001133333 3556777777765442
Q ss_pred ----------------------chhhhHHhHHHHHHHHHhc-CCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHH
Q 000194 722 ----------------------GMRQYISELMPLIVEALLD-GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLL 778 (1880)
Q Consensus 722 ----------------------~~~~~~~~l~p~l~~~l~d-~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~L 778 (1880)
.+.++...++|.+...+.. ..+....+.++..++.++...|..+.|| .|.+++.+
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~--l~~~~~~l 731 (963)
T 2x19_B 654 SHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPM--VPQLCEML 731 (963)
T ss_dssp SCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGG--HHHHHHHH
T ss_pred CcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccccc--HHHHHHHH
Confidence 2566888999998888753 3345788999999999999888877887 47888888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHH
Q 000194 779 LKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVA 858 (1880)
Q Consensus 779 l~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v 858 (1880)
+........+ ..+.+++.+.. -+.. . + .+... ..+ +...+
T Consensus 732 ~~~~~~~~~~----~~l~l~~~li~--~f~~------~-----------~------~~~~~----------~~~-~l~~~ 771 (963)
T 2x19_B 732 GRMYSTIPQA----SALDLTRQLVH--IFAH------E-----------P------AHFPP----------IEA-LFLLV 771 (963)
T ss_dssp HHHHHHSCCH----HHHHHHHHHHH--HHTT------C-----------T------TTCHH----------HHH-HHHHH
T ss_pred HHHHHcCCcc----HHHHHHHHHHH--HhCC------C-----------c------chHHH----------HHH-HHHHH
Confidence 7766543222 24455554421 0000 0 0 00000 000 11344
Q ss_pred HHHHHHHhc-CC-ChhhhHHHHHHHHHHHHHHhCCCC--CCC-cchhhHHHHHHHhcCCcchhHHHHHHHHHHHHH----
Q 000194 859 INSLMRILR-DP-SLASYHQKVVGSLMFIFKSMGLGC--VPY-LPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSI---- 929 (1880)
Q Consensus 859 i~~Ll~~L~-d~-s~~~~~~~~~~al~~i~~~~~~~~--~~~-l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~---- 929 (1880)
+..++.++. +. +..++....+..+..+++.....+ .|. +..+++.++..++..+.......+..+..++..
T Consensus 772 ~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~ 851 (963)
T 2x19_B 772 TSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEV 851 (963)
T ss_dssp HHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSS
T ss_pred HHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCCh
Confidence 455555554 32 223455567777778877765443 255 888999999988876655666666667666643
Q ss_pred --HHHhHHHhHHHHHHHHHHhhc
Q 000194 930 --VRQHIRKYLQELFSLISELWS 950 (1880)
Q Consensus 930 --~~~~i~~y~~~i~~~i~~~~~ 950 (1880)
+.+.+.+|.+.++..+.....
T Consensus 852 ~~~~~~~~~~~~~l~~~l~~~l~ 874 (963)
T 2x19_B 852 ESVGKVVQEDGRMLLIAVLEAIG 874 (963)
T ss_dssp CHHHHHTTTSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 233445667777766665554
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.61 E-value=6e-14 Score=179.62 Aligned_cols=380 Identities=13% Similarity=0.095 Sum_probs=264.2
Q ss_pred HHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-CChhhhhhHHHHHhHhhccccC-
Q 000194 26 LNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-NDAAENLGALRAIDELIDVALG- 102 (1880)
Q Consensus 26 ~~~l~~~l~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~~~~~r~~~i~ai~~Li~~~~~- 102 (1880)
+.+++.++.+++.+.++ |...|..+- .+....|+..+...+ .++ .+...|..|...+..++...-.
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~--------~~~~~~~~~~L~~il---~~~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAA--------VENLPTFLVELSRVL---ANPGNSQVARVAAGLQIKNSLTSKDPD 71 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH---HCTTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHH--------hhChHHHHHHHHHHH---HcCCCChHHHHHHHHHHHHhccccchH
Confidence 56788888888655554 554454432 112333444344322 233 3677888888888888754200
Q ss_pred ----------c-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC--CCCchhHHHHHHHHHHhhhcCCC-cch
Q 000194 103 ----------E-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG--GAMTADEVEFQVKMALDWLRGDR-VEY 168 (1880)
Q Consensus 103 ----------~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~--g~~~~~~v~~~~~~~~~~l~~~~-~~~ 168 (1880)
. ........-+.|...+. +.+..+ ..++.+++.++... ...++++++.++.. +.++. ++.
T Consensus 72 ~~~~~~~~~~~l~~~~~~~ik~~ll~~l~-~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~----l~~~~~~~~ 145 (462)
T 1ibr_B 72 IKAQYQQRWLAIDANARREVKNYVLQTLG-TETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVAN----VTNPNSTEH 145 (462)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHTT-CCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHH----HHCTTCCHH
T ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHHhC-CCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHH----hccCCCCHH
Confidence 0 11111223334444453 446677 99999999999862 23677776665554 44432 668
Q ss_pred hHHHHHHHHHHHHhhc-CccchhchHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHH
Q 000194 169 RRFAAVLILKEMAENA-STVFNVHVAEFVDAIWVALRDP--TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQ 245 (1880)
Q Consensus 169 ~R~aA~~~l~~la~~~-p~~l~~~l~~i~~~i~~~l~D~--~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~ 245 (1880)
.|.+|+.+++.+++.. |..+.++++.+++.+...+.|+ ++.||.+|+++++.++..+....... .+...+++.+.
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~--~~~~~l~~~l~ 223 (462)
T 1ibr_B 146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE--SERHFIMQVVC 223 (462)
T ss_dssp HHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHH
Confidence 8999999999999976 7788999999999999999998 79999999999998765543211100 01122344444
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhC------------
Q 000194 246 DGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFL------------ 312 (1880)
Q Consensus 246 ~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~------------ 312 (1880)
..+.++ +.+++.+++.+|..+....++.+.+++. .+++.++....+.++.||..++..+..++...
T Consensus 224 ~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~ 302 (462)
T 1ibr_B 224 EATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (462)
T ss_dssp HHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred HhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 445554 4788999999999999988888888888 89988888888899999999999999887642
Q ss_pred --------hhhHHHHHHHHHHHHHHHhhcCC---------CCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCC
Q 000194 313 --------RDRFVTNYLKICMNHILTVLRIP---------AERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRR 375 (1880)
Q Consensus 313 --------~~~f~~~yl~~~~~~Ll~~L~~~---------~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~ 375 (1880)
...+++.|++.++|.++..+... ..|..|..+|+.++...|+ ..++.+++.+.+.+.+.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~ 379 (462)
T 1ibr_B 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPD 379 (462)
T ss_dssp SSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCSS
T ss_pred cCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCC
Confidence 12356668899999999888542 2377999999999999985 456788888888886654
Q ss_pred CCCCchHHHHHHHHHHHhCC-CchHHHHHHHHHHHhc--CCCHHHH----HHHHHHHHhC
Q 000194 376 GKPSLEALACVGNIARAMGP-VMEPHVRGLLDIMFSA--GLSTTLV----DALEQITVSI 428 (1880)
Q Consensus 376 ~~~~~~a~~~l~~la~~~g~-~~~~~l~~ll~~l~~~--~ls~~l~----~~l~~i~~~~ 428 (1880)
.+.+..++.++|.+++..++ .+.++++.++|.++.. .-.+.++ .++..+++.+
T Consensus 380 ~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 380 WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 44457899999999986653 4778888888888764 2344444 3555566544
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.61 E-value=6.8e-13 Score=169.76 Aligned_cols=427 Identities=13% Similarity=0.083 Sum_probs=275.8
Q ss_pred HHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCc----------
Q 000194 605 FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE---------- 674 (1880)
Q Consensus 605 ~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~---------- 674 (1880)
+..+.+++.++|..|-..|..+...++ |.+-..+.+.+ .++..+...|..|+-+|..+++...
T Consensus 7 L~~~~s~d~~~r~~Ae~~L~~~~~~~~----~~~~~~L~~il---~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 7 LEKTVSPDRLELEAAQKFLERAAVENL----PTFLVELSRVL---ANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---HCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhCh----HHHHHHHHHHH---HcCCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 334456667777777777776554321 22222222222 2221356667777777777764320
Q ss_pred -cccc-CchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCC-chhhHHHHH
Q 000194 675 -RLIR-PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGA-AVTKREVAV 751 (1880)
Q Consensus 675 -~~~~-py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~-~~~~r~~Al 751 (1880)
..+. .....|-..+++.+.++ ++.+ ..+..+++.++...+.. ...++++|.+++.+++.. +...|+.|+
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~-----~~~v-~~~~~~i~~ia~~~~~~--~~w~~ll~~L~~~l~~~~~~~~~r~~al 151 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTE-----TYRP-SSASQCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTEHMKESTL 151 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCC-----CSSS-CSHHHHHHHHHHHHGGG--TCCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCC-----Cchh-hHHHHHHHHHHHHhccc--cccHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 1111 12234555677777764 3455 67788889988765431 245789999999998753 578999999
Q ss_pred HHHHHHHhhc-CcccccCCcchHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCC
Q 000194 752 STLGQVVQST-GYVITPYNEYPQLLGLLLKMLNGEL-VWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDS 829 (1880)
Q Consensus 752 ~~Lg~l~~~~-~~~i~p~~~~p~ll~~Ll~~L~~~~-~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~ 829 (1880)
.+|+.+++.. +..+.++ .+.+++.++..+++++ ++.+|.+++++++.+.. +... .
T Consensus 152 ~~l~~l~~~~~~~~~~~~--~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~---~~~~-~----------------- 208 (462)
T 1ibr_B 152 EAIGYICQDIDPEQLQDK--SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE---FTKA-N----------------- 208 (462)
T ss_dssp HHHHHHHHHSCGGGTGGG--HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT---TTHH-H-----------------
T ss_pred HHHHHHHHhCCchhhHhH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH---HHHH-h-----------------
Confidence 9999999876 4334444 3679999999998764 78999999999887631 1100 0
Q ss_pred CCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcc-hhhHHHHHHH
Q 000194 830 GQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLP-KVLPDLFHTV 908 (1880)
Q Consensus 830 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~-~iip~ll~~l 908 (1880)
. ...-+...+++.|...+.+++. .....+++++..+....+..+.+|++ .+++.++..+
T Consensus 209 ---------~----------~~~~~~~~l~~~l~~~~~~~~~-~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~ 268 (462)
T 1ibr_B 209 ---------F----------DKESERHFIMQVVCEATQCPDT-RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM 268 (462)
T ss_dssp ---------H----------TSHHHHHHHHHHHHHHTTCSSH-HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH
T ss_pred ---------h----------hhhHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000123355666666666653 45668899999999888777789999 9999999988
Q ss_pred hcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhh
Q 000194 909 RTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVI 988 (1880)
Q Consensus 909 ~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l 988 (1880)
++.++.+|..++..++.++..... + .. ......... ++ .. .....-+++|++.+
T Consensus 269 ~~~~~~v~~~a~~~l~~~~~~~~~--------~----~~-~~~~~~~~~-~~----~~--------~~~~~~~~~~~~~l 322 (462)
T 1ibr_B 269 KSDIDEVALQGIEFWSNVCDEEMD--------L----AI-EASEAAEQG-RP----PE--------HTSKFYAKGALQYL 322 (462)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHHHH--------H----HH-HHCCTTCSS-SC----SS--------CCCCCHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHHHH--------H----HH-hcccccccC-CC----cc--------chhHHHHHHHhhhc
Confidence 887777888777776666543210 0 00 111000000 00 00 01112345688999
Q ss_pred HHHHHHhcccccc---cCchhhHHHHHHHHHHHhcch-hhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccccc---
Q 000194 989 LPCCIQVLSDAER---CNDYTYVLDILHTLEVFGGTL-DEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQ--- 1061 (1880)
Q Consensus 989 ~p~ll~~l~~~~~---~~~~~~~~~il~~l~~~g~~~-~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~~~--- 1061 (1880)
+|.+++.+.+.+. ..+......+..++..++..+ +..+..++|.+...+.. ..+.+|.+|+.++|.++.+.+
T Consensus 323 ~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~ 401 (462)
T 1ibr_B 323 VPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPSQ 401 (462)
T ss_dssp HHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCTTT
T ss_pred cHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCcHHH
Confidence 9999998864211 111122223333443333333 34556677777777754 478999999999999998643
Q ss_pred ccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcccc--ccchhHHHHHHHh
Q 000194 1062 VTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDF--TIFIPSIHKLLLK 1116 (1880)
Q Consensus 1062 ~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f--~~fip~i~~~l~~ 1116 (1880)
+.++++.+++.+++.+.++++.+|..|..+|+.++...|..+ ..|++.+.+.+.+
T Consensus 402 ~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~ 458 (462)
T 1ibr_B 402 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 458 (462)
T ss_dssp TCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 567899999999999999899999999999999999998876 4788888887764
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-11 Score=173.69 Aligned_cols=420 Identities=13% Similarity=0.164 Sum_probs=244.2
Q ss_pred hHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccc-ccCchHHHHHHHHHHh
Q 000194 614 DVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL-IRPYIAPIHKALVARL 692 (1880)
Q Consensus 614 ~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~-~~py~~~il~~ll~~l 692 (1880)
+.|..+..+|..++...|..+.+.+...+.+.+ ..+..+++.++.++.++|.+++.+... -.++++.+++.++...
T Consensus 428 ~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l---~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~ 504 (1049)
T 3m1i_C 428 QLYKSEREVLVYLTHLNVIDTEEIMISKLARQI---DGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLT 504 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH---TSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHH
Confidence 457777788888887666555555444443332 222257899999999999998765433 2355677777766532
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCccc-------
Q 000194 693 LEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVI------- 765 (1880)
Q Consensus 693 ~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i------- 765 (1880)
......+..+.++..++.++|..+...... ..|++.+++.+++.+.+. +..++..|..+|..+++.++..+
T Consensus 505 ~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~l~~~-~~~V~~~A~~al~~l~~~~~~~l~~~~~~~ 582 (1049)
T 3m1i_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMHET-HEGVQDMACDTFIKIVQKCKYHFVIQQPRE 582 (1049)
T ss_dssp TSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHHTHHHHSCCTTC
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 211000013445556788888877654332 468899999999998875 57899999999999999877544
Q ss_pred -ccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccC
Q 000194 766 -TPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLW 844 (1880)
Q Consensus 766 -~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 844 (1880)
.||. +++++.+..++..- +..-....++++|.+....|...... .....+
T Consensus 583 ~~p~~--~~il~~l~~~~~~~-~~~~~~~~~eai~~ii~~~~~~~~~~-------------------------~~~~~l- 633 (1049)
T 3m1i_C 583 SEPFI--QTIIRDIQKTTADL-QPQQVHTFYKACGIIISEERSVAERN-------------------------RLLSDL- 633 (1049)
T ss_dssp SSCHH--HHHHHTHHHHHTTS-CHHHHHHHHHHHHHHHHTCCSHHHHH-------------------------HHHHHH-
T ss_pred CCcHH--HHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHcCCCHHHHH-------------------------HHHHHH-
Confidence 2664 68999888888653 34445667788887643222100000 000000
Q ss_pred CCCCCCcccchHHHHHHHHHHh----cCCCh---h---hhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcc
Q 000194 845 PSFATSEDYYSTVAINSLMRIL----RDPSL---A---SYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDY 914 (1880)
Q Consensus 845 ~~~~~~~~~~~~~vi~~Ll~~L----~d~s~---~---~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~ 914 (1880)
...++..+-.++ .+++. . ..-...++++..+++.+|..+.|+++.+++.++..++... .
T Consensus 634 ----------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~~~-~ 702 (1049)
T 3m1i_C 634 ----------MQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVS-S 702 (1049)
T ss_dssp ----------THHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHH-H
T ss_pred ----------HHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 011222222222 11111 0 1112346677788889999888888888887765544321 0
Q ss_pred hhHHHHHHHHHHH--HHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHH
Q 000194 915 LKDYITWKLGTLV--SIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCC 992 (1880)
Q Consensus 915 ~~~~~~~~l~~lv--~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~l 992 (1880)
..+.....-|... .-....++...|.+..++..+.... .+++..+.||++.++..+
T Consensus 703 ~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~----------------------~~l~~~~~~~~~~~l~~l 760 (1049)
T 3m1i_C 703 MISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKA----------------------RNLDDVVKVLVEPLLNAV 760 (1049)
T ss_dssp HHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHC----------------------SCHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhC----------------------CCHHHHHHHHHHHHHHHH
Confidence 0000000000000 0000111222233333232221111 122334678888888888
Q ss_pred HHhcccccccCchhhHHHHHHHHH-HHhcchhhhhhhhHHHHHHh----hcC--CCcHHHHHHHHHHHHhhccc-c----
Q 000194 993 IQVLSDAERCNDYTYVLDILHTLE-VFGGTLDEHMHLLLPALIRL----FKV--DAPVDIRRAAIETLTRLIPR-V---- 1060 (1880)
Q Consensus 993 l~~l~~~~~~~~~~~~~~il~~l~-~~g~~~~~~~~~ilp~l~~~----l~~--~~~~~vr~~ai~~l~~l~~~-~---- 1060 (1880)
+..+.+.....+....+.+++.+. .+|..+.+++..+++.+... +.. +..+++|+..+..+++++.. .
T Consensus 761 l~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~ 840 (1049)
T 3m1i_C 761 LEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFL 840 (1049)
T ss_dssp HHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 887653211111123455555553 47777778877776665543 432 25688999999999998764 1
Q ss_pred cccc-hhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhc
Q 000194 1061 QVTG-HISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALG 1100 (1880)
Q Consensus 1061 ~~~~-~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g 1100 (1880)
.+.+ ....+++..+..+..+++.+.++++.++..++...+
T Consensus 841 ~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~ 881 (1049)
T 3m1i_C 841 ELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIE 881 (1049)
T ss_dssp HSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Confidence 1223 356778888888988889999999999999998765
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=99.50 E-value=6.4e-10 Score=156.26 Aligned_cols=757 Identities=11% Similarity=0.067 Sum_probs=385.8
Q ss_pred CCCCHHHHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhh
Q 000194 19 GGGSLDALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELI 97 (1880)
Q Consensus 19 ~~~~~~~~~~l~~~l~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li 97 (1880)
..+....+.++++.+-+++.+.++ |-..|..+ + -+++.... +... +.++.+...|..|...+...+
T Consensus 11 ~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~-----~-~~p~~~~~----l~~i---L~~s~~~~vr~~aa~~Lk~~i 77 (1049)
T 3m1i_C 11 NDLDIALLDQVVSTFYQGSGVQQKQAQEILTKF-----Q-DNPDAWQK----ADQI---LQFSTNPQSKFIALSILDKLI 77 (1049)
T ss_dssp SCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-----H-HSTTGGGG----HHHH---HHHCSCHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHhCCChHHHHHHHHHHHHH-----H-hCchHHHH----HHHH---HhhCCCHHHHHHHHHHHHHHH
Confidence 346677888888888887654444 43333322 1 22332221 2211 123567788888888888887
Q ss_pred ccccC----cchhHHHH-HHHHHHhhcccCC-----ChHHHHHHHHHHHHHhhh-CCCCchhHHHHHHHHHHhhhcCCCc
Q 000194 98 DVALG----ENASKVSK-FSNYMRTVFEVKR-----DREILVLASKVLGHLARA-GGAMTADEVEFQVKMALDWLRGDRV 166 (1880)
Q Consensus 98 ~~~~~----~~~~~~~~-~~~~L~~~l~~~~-----d~~v~~~aa~~l~~L~~~-~g~~~~~~v~~~~~~~~~~l~~~~~ 166 (1880)
...-. +....++. ..+++...-+ .. +..++...+.++..++.. ....|+++++..+..+ + .+
T Consensus 78 ~~~W~~l~~~~~~~ir~~ll~~l~~~~~-~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~----~--~~ 150 (1049)
T 3m1i_C 78 TRKWKLLPNDHRIGIRNFVVGMIISMCQ-DDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSS----S--SS 150 (1049)
T ss_dssp HHTGGGSCHHHHHHHHHHHHHHHHHHHH-CHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHH----T--TC
T ss_pred HhhCccCCHHHHHHHHHHHHHHHHhhCC-ccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHH----c--cC
Confidence 54311 11222222 2333333211 11 367889999999999987 3457888877776654 2 33
Q ss_pred chhHHHHHHHHHHHHhhcC----------------ccchhchHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHhhhc
Q 000194 167 EYRRFAAVLILKEMAENAS----------------TVFNVHVAEFVDAIWVALRDP-TLAVRERAVEALRACLRVIEKRE 229 (1880)
Q Consensus 167 ~~~R~aA~~~l~~la~~~p----------------~~l~~~l~~i~~~i~~~l~D~-~~~VR~aA~~al~~~~~~i~~r~ 229 (1880)
...+..++.+|+.+++... ..+..+++.+++.+...+.++ ++.+|.+|.+++..++.++....
T Consensus 151 ~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~ 230 (1049)
T 3m1i_C 151 VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRY 230 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHH
Confidence 4567788888888886432 335677888888888888654 57899999999988766543111
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc-hhh---hHHHHHHHHHHHHHHhhc--chhHHHHHHHH
Q 000194 230 TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT-GEF---MMSRYREVAEIVLRYLEH--RDRLVRLSITS 303 (1880)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~-~~~---~~~~~~~i~~~ll~~~~~--~~~~Vr~~~~~ 303 (1880)
.....++..+++.+.. +.+.+.+|+.+|.+++... ++. ....+..++..++..+.. -.+.. .
T Consensus 231 -~~~~~ll~~l~~~~l~------~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~-----~ 298 (1049)
T 3m1i_C 231 -IYETNILELLSTKFMT------SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTA-----D 298 (1049)
T ss_dssp -HHSSSHHHHHHTHHHH------SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTS-----C
T ss_pred -HhhhhHHHHHHHHhCC------CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcc-----c
Confidence 0112344444433322 2577889999999988742 221 122333333333321111 00000 0
Q ss_pred HhHhHhh--hChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCch
Q 000194 304 LLPRIAH--FLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLE 381 (1880)
Q Consensus 304 ~i~~la~--~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~ 381 (1880)
..+.+.. ....+|.+.+ -.++..+... ...+... +..+.+++..+++.+..............
T Consensus 299 l~~~~~~~~~~d~~~~~~l-~~~~~~~~~~-------------~~~~~~~-~~~~~~~l~~~l~~ll~~~~~~d~~v~~~ 363 (1049)
T 3m1i_C 299 LKATYANANGNDQSFLQDL-AMFLTTYLAR-------------NRALLES-DESLRELLLNAHQYLIQLSKIEERELFKT 363 (1049)
T ss_dssp HHHHHHHTCTTHHHHHHHH-HHHHHHHHHH-------------HHHHHHS-CGGGHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHhccCCcchHHHHHHH-HHHHHHHHHH-------------HHHHHcC-ChhhHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 0000000 0001111111 1111111100 0001111 11234556666666665543322122345
Q ss_pred HHHHHHHHHHHh--CC----CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCC
Q 000194 382 ALACVGNIARAM--GP----VMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQA 455 (1880)
Q Consensus 382 a~~~l~~la~~~--g~----~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~ 455 (1880)
++++|..+++.+ .+ .+.|++..+++.++. .-.+.
T Consensus 364 ~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~--------------------------------------~m~~~-- 403 (1049)
T 3m1i_C 364 TLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIE--------------------------------------NMVRP-- 403 (1049)
T ss_dssp HHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHH--------------------------------------TCCCC--
T ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH--------------------------------------hcCCC--
Confidence 777888777733 11 234444444433321 00010
Q ss_pred CCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCC-ChHHHHHHHHHHHHhhhccC
Q 000194 456 RPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDE-DKATRKDAALCCCKLVANSF 534 (1880)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~-~~~VR~aAa~~~~~l~~~~~ 534 (1880)
. +..+.+. |+ +..+. .+.++. ....|+++..++-.+....
T Consensus 404 --e-----------d~~~~~d-d~----------------~e~~r--------~~~~d~d~~~~~~~~~~~L~~l~~~~- 444 (1049)
T 3m1i_C 404 --E-----------EVLVVEN-DE----------------GEIVR--------EFVKESDTIQLYKSEREVLVYLTHLN- 444 (1049)
T ss_dssp --T-----------TCCEEEC-TT----------------SCEEE--------CSSCCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred --c-----------ceeeeeC-CC----------------CcchH--------hhhccchHHHHHHHHHHHHHHHHccC-
Confidence 0 0001000 00 00000 111111 1245665554433332111
Q ss_pred CCccccccCCccccccccchhHHHHHHHHHHHHHHhc--CCChhHHHHHHHhccCC-CCcchhhc---cHhhHHHHHHHh
Q 000194 535 SGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVA--DADVTVRHSIFSSLYGN-RGFDDFLA---QADCLSAIFAAL 608 (1880)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~--d~~~~vR~~~l~~l~~~-~~fd~~L~---~~~~l~~L~~~l 608 (1880)
...++..+++.+ ...+. +++|..|.+++.+++.- +.+..... .+.+++.+....
T Consensus 445 -------------------~~~~l~~v~~~l-~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~ 504 (1049)
T 3m1i_C 445 -------------------VIDTEEIMISKL-ARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLT 504 (1049)
T ss_dssp -------------------HHHHHHHHHHHH-HHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred -------------------HHHHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHH
Confidence 012233333322 22232 46788888888877521 11111100 123444444322
Q ss_pred C-----CCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccc------
Q 000194 609 N-----DEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLI------ 677 (1880)
Q Consensus 609 ~-----D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~------ 677 (1880)
. |+.+.||..++.++|+++...... ..++..++..++..+.+ ..++++..|+.+|..+++.++..+
T Consensus 505 ~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~l~~--~~~~V~~~A~~al~~l~~~~~~~l~~~~~~ 581 (1049)
T 3m1i_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMHE--THEGVQDMACDTFIKIVQKCKYHFVIQQPR 581 (1049)
T ss_dssp TSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHTHHHHSCCTT
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 1 456667777999999987643211 12344444444544443 468999999999999999877655
Q ss_pred --cCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCC--chhhhHHhHHHHHHHHHhc--------CC---
Q 000194 678 --RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF--GMRQYISELMPLIVEALLD--------GA--- 742 (1880)
Q Consensus 678 --~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~--~~~~~~~~l~p~l~~~l~d--------~~--- 742 (1880)
.||++.|+..+...+.+- ...-...++.|++.++...|+ ...+|+..+++.+++.+.. .+
T Consensus 582 ~~~p~~~~il~~l~~~~~~~-----~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 656 (1049)
T 3m1i_C 582 ESEPFIQTIIRDIQKTTADL-----QPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLL 656 (1049)
T ss_dssp CSSCHHHHHHHTHHHHHTTS-----CHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGG
T ss_pred CCCcHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhc
Confidence 499999999998887753 444456778999999887773 5889999998887765431 00
Q ss_pred chh-hHH--HHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCc
Q 000194 743 AVT-KRE--VAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSH 819 (1880)
Q Consensus 743 ~~~-~r~--~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~ 819 (1880)
+.+ .+. ..+.+++.++...|..+.|+.. .++..++.+.+.- ...-.. .+...|... .
T Consensus 657 d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~--~i~~~~l~~~~~~--~~~~~~---~~~~~g~~~-~------------ 716 (1049)
T 3m1i_C 657 DSETVKIIANIIKTNVAVCTSMGADFYPQLG--HIYYNMLQLYRAV--SSMISA---QVAAEGLIA-T------------ 716 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHHHH--HHHHHH---HHHHHCGGG-G------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHHHHH--HHHHHH---HHHccCchh-h------------
Confidence 111 122 2356677777877776665542 2333333332210 000000 011111100 0
Q ss_pred ccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHh---CCCCCCC
Q 000194 820 GEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSM---GLGCVPY 896 (1880)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~---~~~~~~~ 896 (1880)
....-.+...+.+.++++++. ..... +..+.||
T Consensus 717 ----------------------------~~p~~~~~~~~~~~l~~ll~~----------------~~~~~~~l~~~~~~~ 752 (1049)
T 3m1i_C 717 ----------------------------KTPKVRGLRTIKKEILKLVET----------------YISKARNLDDVVKVL 752 (1049)
T ss_dssp ----------------------------GSHHHHHHHHHHHHHHHHHHH----------------HHHHCSCHHHHHHHT
T ss_pred ----------------------------hhHHHHHHHHHHHHHHHHHHH----------------HHHhCCCHHHHHHHH
Confidence 000001222333444443311 11111 1113477
Q ss_pred cchhhHHHHHHHhcCCcch-hHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhh----cC--CCCCcccccccchhHHHH
Q 000194 897 LPKVLPDLFHTVRTCDDYL-KDYITWKLGTLVSIVRQHIRKYLQELFSLISELW----SS--FSLPATNRTYRGLPVLHL 969 (1880)
Q Consensus 897 l~~iip~ll~~l~~~~~~~-~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~----~~--~~~~~~~~~~~~~~~l~~ 969 (1880)
++.++..++....+..+.. ...++..++.++..++.++.||++.++..+.+.. +. .+. +.+....+.+
T Consensus 753 ~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~-----pd~~~~~f~l 827 (1049)
T 3m1i_C 753 VEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEY-----PEHRVEFYKL 827 (1049)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSS-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhC-----HHHHHHHHHH
Confidence 8888888888776543332 2467788999999999999999999998887664 21 111 2223356777
Q ss_pred HHHHHHHhhhhhhcc----chhhHHHHHHhccc
Q 000194 970 VQQLCLALNDEFRTH----LPVILPCCIQVLSD 998 (1880)
Q Consensus 970 i~~l~~~l~~~f~~y----l~~l~p~ll~~l~~ 998 (1880)
+..+.......|.+. +..++...+..++.
T Consensus 828 l~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~ 860 (1049)
T 3m1i_C 828 LKVINEKSFAAFLELPPAAFKLFVDAICWAFKH 860 (1049)
T ss_dssp HHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCC
Confidence 777776555555432 34455555666654
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-09 Score=147.39 Aligned_cols=436 Identities=12% Similarity=0.103 Sum_probs=248.9
Q ss_pred HHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHh---cCCCChHhHHHHHHHHHHHHHhCccc------ccCchHHHH
Q 000194 615 VREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLE---QSSADNKCREESAKLLGCLIRNCERL------IRPYIAPIH 685 (1880)
Q Consensus 615 VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~---~~~~~~~~r~~a~~~L~~l~~~~~~~------~~py~~~il 685 (1880)
.|.....++..++...|..+.+.+-..+...+.... .+ .+++.+|.++.+|+.+++.+... ..++++.++
T Consensus 414 ~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~-~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~ 492 (980)
T 3ibv_A 414 MRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPE-NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLS 492 (980)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHH-HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCC-CCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHH
Confidence 455544555555555666666633333434443321 12 45888999999999999986542 235666777
Q ss_pred HHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHH--HHhcCCchhhHHHHHHHHHHHHhhcCc
Q 000194 686 KALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE--ALLDGAAVTKREVAVSTLGQVVQSTGY 763 (1880)
Q Consensus 686 ~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~--~l~d~~~~~~r~~Al~~Lg~l~~~~~~ 763 (1880)
+.+...+..+.....++.|+...+.++|..+...... ..|++.+++.+++ .+.+. +..+|..|..+|..+++.++.
T Consensus 493 ~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~-~~~l~~~L~~ll~~~gl~~~-~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 493 QILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE-SAAIPALIEYFVGPRGIHNT-NERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-CTTHHHHHHHHTSTTTTTCC-CTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHhccccccCC-ChhHHHHHHHHHHHHHHHhhH
Confidence 6666666533212347889999999999888765432 3677788888877 66654 467899999999999999998
Q ss_pred ccccCCcchHHHHHHHHHhcCC----CCH----------------HHHHHHHHHHHHHc-ccC-ccchhhccccCCCccc
Q 000194 764 VITPYNEYPQLLGLLLKMLNGE----LVW----------------STRREVLKVLGIMG-ALD-PHAHKRNQQLSGSHGE 821 (1880)
Q Consensus 764 ~i~p~~~~p~ll~~Ll~~L~~~----~~~----------------~vr~~~l~~lg~lg-ald-p~~~~~~~~~~~~~~~ 821 (1880)
.+.||. +.++..+...|... ... +-+...+.++|.+- +.. |.-.+
T Consensus 571 ~L~~~~--~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~----------- 637 (980)
T 3ibv_A 571 QVVNYT--ESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQ----------- 637 (980)
T ss_dssp TCSSSH--HHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHH-----------
T ss_pred HhhhHH--HHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHH-----------
Confidence 888885 57888887777521 111 12333555555542 111 11000
Q ss_pred ccccCCCCCCCCCCCcccccccCCCCCCCcccchHHH----HHHHHHHhcCCChh-----hhHHHHHHHHHHHHHHhCCC
Q 000194 822 VTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVA----INSLMRILRDPSLA-----SYHQKVVGSLMFIFKSMGLG 892 (1880)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v----i~~Ll~~L~d~s~~-----~~~~~~~~al~~i~~~~~~~ 892 (1880)
..|...+ +..+-+.+...... ..| ..+.|+..+.+.....
T Consensus 638 ------------------------------~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~-~~i~al~~lakgf~~~ 686 (980)
T 3ibv_A 638 ------------------------------ALYCDSLINALIGKANAALSSDLSALENIISVY-CSLMAIGNFAKGFPAR 686 (980)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHH-HHHHHHHHHHHTSCSC
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHhhcccCccHHHHHH-HHHHHHHHHhccCCcc
Confidence 0011222 22233333221111 111 3466667777654332
Q ss_pred ------CCCCcchhhHHHHHHHhc--CCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccch
Q 000194 893 ------CVPYLPKVLPDLFHTVRT--CDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGL 964 (1880)
Q Consensus 893 ------~~~~l~~iip~ll~~l~~--~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~ 964 (1880)
+...+.++++.++..+.. .+..+|+.+...+..++..+|..+.||+|+++..+........ ..
T Consensus 687 ~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e---------~~ 757 (980)
T 3ibv_A 687 GSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNE---------LV 757 (980)
T ss_dssp C-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTT---------HH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHH---------HH
Confidence 122344677777777764 3456899999999999999999999999999999886555332 12
Q ss_pred hHHHHHHHHHHHhhhhhhccchhhHHHHHHh----cccccccCc--hh---hH---HHHHHHHHH--Hhcch-h----hh
Q 000194 965 PVLHLVQQLCLALNDEFRTHLPVILPCCIQV----LSDAERCND--YT---YV---LDILHTLEV--FGGTL-D----EH 1025 (1880)
Q Consensus 965 ~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~----l~~~~~~~~--~~---~~---~~il~~l~~--~g~~~-~----~~ 1025 (1880)
..+.+++.+...++.++.+++..+++.++.. |+......| |. .. ...++++.. ++..+ . .+
T Consensus 758 ~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~ 837 (980)
T 3ibv_A 758 DVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVY 837 (980)
T ss_dssp HHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHH
Confidence 6899999999999999888888887776653 333211111 11 11 112222221 11111 1 12
Q ss_pred hhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcccc---c----ccchhHhHHHHHHHhhCCCCHHHH--------HHHHH
Q 000194 1026 MHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRV---Q----VTGHISSLVHHLKLVLDGKNDELR--------KDAVD 1090 (1880)
Q Consensus 1026 ~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~~---~----~~~~~~~ii~~l~~~l~~~~~~l~--------~~al~ 1090 (1880)
+..++-.++.....-.....++.|+..+.+++..- + |..|+=.+++....+..+++-+++ ..+..
T Consensus 838 l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~ 917 (980)
T 3ibv_A 838 FDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLSLTPLCFEMPVNPNFNTRDGQSLVVLGELAG 917 (980)
T ss_dssp HHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHGGGC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHH
Confidence 22233333332222234568899999999987652 1 444433355544555544433333 33444
Q ss_pred HHHHHHHHhccccccc
Q 000194 1091 ALCCLAHALGEDFTIF 1106 (1880)
Q Consensus 1091 ~L~~l~~~~g~~f~~f 1106 (1880)
++..+..+.|.+|..|
T Consensus 918 ~~k~~~~~~g~~~~~~ 933 (980)
T 3ibv_A 918 LQKIILEKLGDIYKSY 933 (980)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHH
Confidence 5555555666555433
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.41 E-value=6.6e-11 Score=154.93 Aligned_cols=428 Identities=14% Similarity=0.100 Sum_probs=264.0
Q ss_pred HHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHH
Q 000194 72 DRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE 151 (1880)
Q Consensus 72 ~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~ 151 (1880)
+.+.+-++++++..|..|+.++..+.. +.....+.+.+..++. +.++.|++.|+.+++++..... +.++
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~~------~~~~~~l~~~l~~~L~-d~~~~VRk~A~~al~~i~~~~p----~~~~ 157 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIRV------DKITEYLCEPLRKCLK-DEDPYVRKTAAVCVAKLHDINA----QMVE 157 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCCS------GGGHHHHHHHHHHHSS-CSCHHHHHHHHHHHHHHHHSSC----CCHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCh------HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHhhCh----hhcc
Confidence 445556677788778777777666631 2234455667888885 6789999999999999998532 2333
Q ss_pred --HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCcc-chhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Q 000194 152 --FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTV-FNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKR 228 (1880)
Q Consensus 152 --~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~-l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r 228 (1880)
..++.+.+.|. +.+...|.+|+.+|.+++...|.. .....+..+..++..+.|.++.++....++++.+. ..
T Consensus 158 ~~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~----~~ 232 (591)
T 2vgl_B 158 DQGFLDSLRDLIA-DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN----PK 232 (591)
T ss_dssp HHHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC----CC
T ss_pred cccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC----CC
Confidence 34566666664 667788999999999999988765 45566777888888888888888766666554321 11
Q ss_pred chhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc---chhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHh
Q 000194 229 ETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN---TGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLL 305 (1880)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~---~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i 305 (1880)
+ ......+++.+...+.+.+ ..++..|+.++..+... ..+.+......+...++... ++++.||..++.++
T Consensus 233 ~----~~~~~~~l~~l~~~l~~~~-~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l 306 (591)
T 2vgl_B 233 D----DREAQSICERVTPRLSHAN-SAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNI 306 (591)
T ss_dssp S----HHHHHHHHHHHTTCSCSST-THHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred C----hHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHH
Confidence 1 1234567777777777664 57888888887776542 23444444455555555444 47899999999999
Q ss_pred HhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHH
Q 000194 306 PRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEAL 383 (1880)
Q Consensus 306 ~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~ 383 (1880)
..++...|+.|.+ ++..+ . ++.+.. .|..|+..++.++..- -++.+++.+.+.+.+.+...+..++
T Consensus 307 ~~i~~~~p~~~~~-~~~~~----~-~~~~d~~~Ir~~al~~L~~l~~~~------nv~~iv~~L~~~l~~~d~~~r~~~v 374 (591)
T 2vgl_B 307 NLIVQKRPEILKQ-EIKVF----F-VKYNDPIYVKLEKLDIMIRLASQA------NIAQVLAELKEYATEVDVDFVRKAV 374 (591)
T ss_dssp HHHHHHCCSTTTT-CTTTT----S-CCTTSCHHHHHHHHHHHHHTCCSS------THHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHhChHHHHH-HHHhh----e-eccCChHHHHHHHHHHHHHHCChh------hHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9998877765432 22211 1 111111 3567777777665222 2456777788877654333345788
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcC--CCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 000194 384 ACVGNIARAMGPVMEPHVRGLLDIMFSAG--LSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATP 461 (1880)
Q Consensus 384 ~~l~~la~~~g~~~~~~l~~ll~~l~~~~--ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~ 461 (1880)
.+++.++..+++....+++.+++.+-..+ ...+...++..+....|.....+...+.+.+.
T Consensus 375 ~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~----------------- 437 (591)
T 2vgl_B 375 RAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLD----------------- 437 (591)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTT-----------------
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHH-----------------
Confidence 89998887765444556666555443322 22233446666666677654443333332211
Q ss_pred CCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccc
Q 000194 462 IRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQ 541 (1880)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~ 541 (1880)
+..+.+....++.+||+|.-.-..-.+.++.. ..-+.+.++.||.++..++.+++...+..
T Consensus 438 -------------~~~~~~~~~~~~wilGey~~~~~~~~~~l~~l-~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~----- 498 (591)
T 2vgl_B 438 -------------SLDEPDARAAMIWIVGEYAERIDNADELLESF-LEGFHDESTQVQLTLLTAIVKLFLKKPSE----- 498 (591)
T ss_dssp -------------TCCSHHHHHHHHHHHHTTCTTCTTHHHHHHHH-STTCSSSCHHHHHHHHHHHHHHHTTCCST-----
T ss_pred -------------hccCHHHHHHHHHHHHcccccccCHHHHHHHH-HHhhccCCHHHHHHHHHHHHHHHhcCchH-----
Confidence 11123345678899999832111111222222 22233457899999999999988644310
Q ss_pred cCCccccccccchhHHHHHHHHHHHHHHhcC-CChhHHHHHHHhc
Q 000194 542 FGASRSNRTGGKRRRLIEELVEKLLIAAVAD-ADVTVRHSIFSSL 585 (1880)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d-~~~~vR~~~l~~l 585 (1880)
....+..++..+..| +|++||..+...+
T Consensus 499 ----------------~~~~i~~ll~~~~~d~~d~evrdRA~~y~ 527 (591)
T 2vgl_B 499 ----------------TQELVQQVLSLATQDSDNPDLRDRGYIYW 527 (591)
T ss_dssp ----------------THHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHhhhcCCChHHHHHHHHHH
Confidence 123344555555555 6788888877765
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.39 E-value=2.1e-10 Score=150.19 Aligned_cols=498 Identities=11% Similarity=0.106 Sum_probs=296.5
Q ss_pred HHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH
Q 000194 157 ALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW 236 (1880)
Q Consensus 157 ~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~ 236 (1880)
+-+-|.+.....++.+...++..+..|-+ ++..++.++..+.++++.+|+.+.-++..+.+. .++.
T Consensus 18 i~~~L~~~~~~~k~~~~~kli~~~~~G~d------~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--------~~e~ 83 (591)
T 2vgl_B 18 LKAELNNEKKEKRKEAVKKVIAAMTVGKD------VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--------QPDM 83 (591)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHTTCC------CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--------SHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHCCCC------hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--------CchH
Confidence 33344444445566666666665555532 233455566788999999999999988876542 1233
Q ss_pred HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhH
Q 000194 237 YYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRF 316 (1880)
Q Consensus 237 ~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f 316 (1880)
...+.+.+...+.+++ ..+|..|+.+++.+ ....+.+ .+++.+...+.++++.||+.|+.++..++...++..
T Consensus 84 ~~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i---~~~~~~~---~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~ 156 (591)
T 2vgl_B 84 AIMAVNSFVKDCEDPN-PLIRALAVRTMGCI---RVDKITE---YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV 156 (591)
T ss_dssp HHTTHHHHGGGSSSSS-HHHHHHHHHHHHTC---CSGGGHH---HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHHHHHHHHHHcCCCC-HHHHHHHHHHHHcC---ChHHHHH---HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc
Confidence 3445567777788765 56677766555543 2222332 355667777889999999999999999998777643
Q ss_pred HHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh-hhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHh
Q 000194 317 VTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE-LFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1880)
Q Consensus 317 ~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~-~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~ 393 (1880)
.+ ...++.+...|.+++ .+..|+.+|+.++..-++. ..+..+..+..+...+.+.++-.+..++.++ ..+
T Consensus 157 ~~---~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l----~~l 229 (591)
T 2vgl_B 157 ED---QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCL----SNY 229 (591)
T ss_dssp HH---HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH----HTS
T ss_pred cc---ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHH----HHh
Confidence 21 467888888887543 4788999999987665432 2233344444444444322110011233333 234
Q ss_pred CCCchHHHHHHHHHHHhc--CCCHH-HHHHHHHHHHhC------CCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 000194 394 GPVMEPHVRGLLDIMFSA--GLSTT-LVDALEQITVSI------PSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRG 464 (1880)
Q Consensus 394 g~~~~~~l~~ll~~l~~~--~ls~~-l~~~l~~i~~~~------p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~ 464 (1880)
++.-.+....+++.+... ..++. ..+|...+..-. |.....+.+++...+...+.
T Consensus 230 ~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~---------------- 293 (591)
T 2vgl_B 230 NPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS---------------- 293 (591)
T ss_dssp CCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT----------------
T ss_pred CCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc----------------
Confidence 443334556666666543 12223 335555555422 22333333333322221111
Q ss_pred CccCCCccccccCCchhHHHHHHhhcccc-cCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccC
Q 000194 465 NVMNIPQQVSDLNGSAPVQLALQTLARFN-FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFG 543 (1880)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~Al~~L~~~~-~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~ 543 (1880)
.+......|+++|+.+. ..+..+.+++.. +....+ ++..||+.|...+..+....
T Consensus 294 ------------~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~-~~~~~~-d~~~Ir~~al~~L~~l~~~~---------- 349 (591)
T 2vgl_B 294 ------------GEPEVQYVALRNINLIVQKRPEILKQEIKV-FFVKYN-DPIYVKLEKLDIMIRLASQA---------- 349 (591)
T ss_dssp ------------SCHHHHHHHHHHHHHHHHHCCSTTTTCTTT-TSCCTT-SCHHHHHHHHHHHHHTCCSS----------
T ss_pred ------------CCccHHHHHHHHHHHHHHhChHHHHHHHHh-heeccC-ChHHHHHHHHHHHHHHCChh----------
Confidence 12334567888888762 223333333332 122223 34899998887666543110
Q ss_pred CccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC-CCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHH
Q 000194 544 ASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG-NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISV 622 (1880)
Q Consensus 544 ~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~-~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~ 622 (1880)
-+..++..|.. .+.+.|.++|..++.+++. +..|.+. ...+++.|...+.|....|+..++..
T Consensus 350 -------------nv~~iv~~L~~-~l~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v~~Ll~ll~~~~~~v~~e~i~~ 413 (591)
T 2vgl_B 350 -------------NIAQVLAELKE-YATEVDVDFVRKAVRAIGRCAIKVEQS--AERCVSTLLDLIQTKVNYVVQEAIVV 413 (591)
T ss_dssp -------------THHHHHHHHHH-HTTSSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred -------------hHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHhChhH--HHHHHHHHHHHHcccchHHHHHHHHH
Confidence 13455655554 3578899999999888852 1233211 23578999999999999999999999
Q ss_pred HHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCCh
Q 000194 623 AGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANN 702 (1880)
Q Consensus 623 l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~ 702 (1880)
++.+...+|......+. .+...++.. .++..+..++|+||+.+...++ .+.+++.++..+.+. ++
T Consensus 414 l~~ii~~~p~~~~~~v~----~L~~~l~~~-~~~~~~~~~~wilGey~~~~~~-----~~~~l~~l~~~~~~~-----~~ 478 (591)
T 2vgl_B 414 IRDIFRKYPNKYESIIA----TLCENLDSL-DEPDARAAMIWIVGEYAERIDN-----ADELLESFLEGFHDE-----ST 478 (591)
T ss_dssp HHHHHHHSCSSCCTTHH----HHHHTTTTC-CSHHHHHHHHHHHHTTCTTCTT-----HHHHHHHHSTTCSSS-----CH
T ss_pred HHHHHHHCcchHHHHHH----HHHHHHHhc-cCHHHHHHHHHHHHcccccccC-----HHHHHHHHHHhhccC-----CH
Confidence 99998888764211111 222233444 5678888999999988765543 356666666655543 67
Q ss_pred hHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHH-hcCCchhhHHHHHHHHHHH
Q 000194 703 GIISGVLVTVGDLARVGGFGMRQYISELMPLIVEAL-LDGAAVTKREVAVSTLGQV 757 (1880)
Q Consensus 703 ~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l-~d~~~~~~r~~Al~~Lg~l 757 (1880)
.++..++.++..+....++.. ...+..+++.. .|..+.++|+-|...++-+
T Consensus 479 ~vr~~~l~a~~Kl~~~~p~~~----~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 479 QVQLTLLTAIVKLFLKKPSET----QELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHHHHHHHHHHHHHTTCCSTT----HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCchHH----HHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 889888888888876655433 23444455544 4656778999988776654
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.2e-10 Score=148.85 Aligned_cols=429 Identities=15% Similarity=0.085 Sum_probs=255.5
Q ss_pred HHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH
Q 000194 73 RISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF 152 (1880)
Q Consensus 73 ~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~ 152 (1880)
.+.+++.+++...|+-|-+++..+..-. +....-..+.+.+-+. +.++.++..|.+++|.+.. +++++.
T Consensus 74 ~vik~~~s~~~~~Krl~Yl~~~~~~~~~----~e~~~l~in~l~kDL~-~~n~~vr~lAL~~L~~i~~------~~~~~~ 142 (618)
T 1w63_A 74 ECLKLIASQKFTDKRIGYLGAMLLLDER----QDVHLLMTNCIKNDLN-HSTQFVQGLALCTLGCMGS------SEMCRD 142 (618)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHS-CSSSHHHHHHHHHHHHHCC------HHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHhcC-CCCHhHHHHHHHHHHhcCC------HHHHHH
Confidence 3446777889888888888888886542 2333445677777775 5688999999999999863 456666
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhh
Q 000194 153 QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRW 232 (1880)
Q Consensus 153 ~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~ 232 (1880)
.++.+...+.+ .++..|.+|+.++..+....|+.+. .+++.+...|.|+++.|+.+|..++..+... .+..
T Consensus 143 l~~~l~~~L~~-~~~~VRk~A~~al~~l~~~~p~~v~----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~----~~~~ 213 (618)
T 1w63_A 143 LAGEVEKLLKT-SNSYLRKKAALCAVHVIRKVPELME----MFLPATKNLLNEKNHGVLHTSVVLLTEMCER----SPDM 213 (618)
T ss_dssp HHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHCGGGGG----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS----HHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHChHHHH----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh----ChHH
Confidence 66666666654 5678899999999999999998654 5566667888999999999999998876421 1100
Q ss_pred HHHHHHHHHHHHHhhcc---------------CCCChhHHHHHHHHHHHHHHcchh---hhH------------------
Q 000194 233 RVQWYYRMFEATQDGLG---------------RNAPVHSIHGSLLAVGELLRNTGE---FMM------------------ 276 (1880)
Q Consensus 233 ~~~~~~~~l~~~~~~l~---------------~~~~~~~~~~al~~l~~ll~~~~~---~~~------------------ 276 (1880)
...+..+.+.+...|. .+++|- +...+.+|+.+....++ .+.
T Consensus 214 -~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~-q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~ 291 (618)
T 1w63_A 214 -LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL-QVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGN 291 (618)
T ss_dssp -HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH-HHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHH
Confidence 1112222222221111 011222 11122222222211100 000
Q ss_pred ----------------HH-HHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--C
Q 000194 277 ----------------SR-YREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--E 337 (1880)
Q Consensus 277 ----------------~~-~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~ 337 (1880)
+. .......+..++.++++.||..++.++..++...|..|. .| ...++.++.++. .
T Consensus 292 aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~-~~----~~~i~~~l~d~d~~I 366 (618)
T 1w63_A 292 AILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQ-RH----RSTIVDCLKDLDVSI 366 (618)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHG-GG----HHHHHHGGGSSCHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHH-HH----HHHHHHHccCCChhH
Confidence 11 112334444556667777888887777777765554332 23 334445555433 3
Q ss_pred cchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC--CCH
Q 000194 338 RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAG--LST 415 (1880)
Q Consensus 338 r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~--ls~ 415 (1880)
|..|++++..++..- . ++.++..+.+.+.+.+.+.+..++.+++.+|..+.+.+..|++.++..+-..+ ...
T Consensus 367 r~~alelL~~l~~~~--n----v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~ 440 (618)
T 1w63_A 367 KRRAMELSFALVNGN--N----IRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRD 440 (618)
T ss_dssp HHHHHHHHHHHCCSS--S----THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCS
T ss_pred HHHHHHHHHHHcccc--c----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHH
Confidence 667777777765421 1 23445555555543333334578999999999998888899999887665544 455
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccccc-
Q 000194 416 TLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNF- 494 (1880)
Q Consensus 416 ~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~- 494 (1880)
+....+..+....|.+...+...+.+.+..- .........++..||+|.-
T Consensus 441 ~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~-----------------------------~~~~~~~~~~~wilGEy~~~ 491 (618)
T 1w63_A 441 DAVPNLIQLITNSVEMHAYTVQRLYKAILGD-----------------------------YSQQPLVQVAAWCIGEYGDL 491 (618)
T ss_dssp SHHHHHHHHHHHSCSTHHHHHHHHHHHHHHC-----------------------------CSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHHHhcc-----------------------------cccHHHHHHHHHHHhhhHHH
Confidence 5677888888889988877777777666410 0011133458889998831
Q ss_pred -C-C-------Ccchh-hHHHHHhhhcc--CCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHH
Q 000194 495 -K-G-------HDLLE-FARDSVVLYLD--DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELV 562 (1880)
Q Consensus 495 -~-~-------~~l~~-~v~~~~~~~l~--~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 562 (1880)
. | ....| .+.+.+..++. ..++.||.++..++.+++...+. . .+.+
T Consensus 492 i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~------------------~----~~~l 549 (618)
T 1w63_A 492 LVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC------------------T----VNRI 549 (618)
T ss_dssp HTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS------------------C----HHHH
T ss_pred hcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc------------------h----HHHH
Confidence 0 0 00101 11122222332 45789999888888888764431 1 2233
Q ss_pred HHHHHHHhcCCChhHHHHHHHhc
Q 000194 563 EKLLIAAVADADVTVRHSIFSSL 585 (1880)
Q Consensus 563 ~~Ll~~~~~d~~~~vR~~~l~~l 585 (1880)
..++.....|+|.+||..+...+
T Consensus 550 ~~~L~~~~~~~d~evrdRA~~y~ 572 (618)
T 1w63_A 550 KKVVSIYGSSIDVELQQRAVEYN 572 (618)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHH
Confidence 34444445667777777666654
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.1e-08 Score=128.32 Aligned_cols=501 Identities=13% Similarity=0.101 Sum_probs=303.4
Q ss_pred ChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC--CCCcc
Q 000194 515 DKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG--NRGFD 592 (1880)
Q Consensus 515 ~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~--~~~fd 592 (1880)
.++.|..|+.++.+++..... . .......+.+++++..-+..++.+-...++.+++. ...++
T Consensus 217 ~~~~r~~~~~~l~~~~~~~~~-------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~ 280 (810)
T 3now_A 217 TGSSSTIASVCLARIYENMYY-------D---------EAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLD 280 (810)
T ss_dssp CTTHHHHHHHHHHHHHHTCCS-------H---------HHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHH
T ss_pred ChhHHHHHHHHHHHHHHHhcc-------c---------hhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHH
Confidence 457898888888888853321 0 12344566666666666666665555444444421 11111
Q ss_pred h---hhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHH
Q 000194 593 D---FLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCL 669 (1880)
Q Consensus 593 ~---~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l 669 (1880)
. .+.....++.+...++.++..++..|+++++.++.. +.. --.+++.=.+.|..+-.+ ++...|..|+..|..+
T Consensus 281 ~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~-R~~I~~~gv~~L~~Ll~s-~~~~vr~~Al~~L~kl 357 (810)
T 3now_A 281 VGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK-KDK-AKALCEQGVDILKRLYHS-KNDGIRVRALVGLCKL 357 (810)
T ss_dssp HHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHH-HHTTHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHH-HHHHHHcCcHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 1 111335688888888888999999999999997664 321 111111112444555445 5678899999999998
Q ss_pred HHhCc--ccccCc----hHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH---HhHHHHHHHHHhc
Q 000194 670 IRNCE--RLIRPY----IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI---SELMPLIVEALLD 740 (1880)
Q Consensus 670 ~~~~~--~~~~py----~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~---~~l~p~l~~~l~d 740 (1880)
..... ...+++ +.++++.|.+.+.++. .+.+++..++.+|..|+... .....+ ..++|.+++.+..
T Consensus 358 ~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~---~d~~v~~~AveaLayLS~~~--~vk~~lv~d~g~Ip~LV~LL~s 432 (810)
T 3now_A 358 GSYGGQDAAIRPFGDGAALKLAEACRRFLIKPG---KDKDIRRWAADGLAYLTLDA--ECKEKLIEDKASIHALMDLARG 432 (810)
T ss_dssp HTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSS---CCSSHHHHHHHHHHHHTTSH--HHHHHHHHCHHHHHHHHHHHHT
T ss_pred ccccccCccccchhhccHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHhCCc--HHHHHHHHccchHHHHHHHhCC
Confidence 75432 122333 5688888999888641 26778999999999986432 222222 3588999998885
Q ss_pred CCchhhHHHHHHHHHHHHhhcCcc--------cccCCcc-----------------------hHHHHHHHHHhcCCCCHH
Q 000194 741 GAAVTKREVAVSTLGQVVQSTGYV--------ITPYNEY-----------------------PQLLGLLLKMLNGELVWS 789 (1880)
Q Consensus 741 ~~~~~~r~~Al~~Lg~l~~~~~~~--------i~p~~~~-----------------------p~ll~~Ll~~L~~~~~~~ 789 (1880)
. +......|+++|+.++...... +.-|... ...++.|..+++++ ++.
T Consensus 433 ~-d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~-s~~ 510 (810)
T 3now_A 433 G-NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE-SHN 510 (810)
T ss_dssp T-CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCC-CHH
T ss_pred C-ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCC-CHH
Confidence 4 5667889999999998754210 0001000 13678888888764 789
Q ss_pred HHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCC
Q 000194 790 TRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDP 869 (1880)
Q Consensus 790 vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~ 869 (1880)
+|..+.++|+.+.. ++.....+ ...-+++.|+..|++.
T Consensus 511 vqe~Aa~aL~NLA~-d~~~r~~V-----------------------------------------v~~Gaip~Lv~LL~s~ 548 (810)
T 3now_A 511 SQELIARVLNAVCG-LKELRGKV-----------------------------------------VQEGGVKALLRMALEG 548 (810)
T ss_dssp HHHHHHHHHHHHHT-SHHHHHHH-----------------------------------------HHTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHcC-CHHHHHHH-----------------------------------------HHCCCHHHHHHHHccC
Confidence 99999999998852 22100000 0112567888888877
Q ss_pred ChhhhHHHHHHHHHHHHHHhCCCC-CC--CcchhhHHHHHHHhcCCcc-hhHHHHHHHHHHHHH---HHHhHH--HhHHH
Q 000194 870 SLASYHQKVVGSLMFIFKSMGLGC-VP--YLPKVLPDLFHTVRTCDDY-LKDYITWKLGTLVSI---VRQHIR--KYLQE 940 (1880)
Q Consensus 870 s~~~~~~~~~~al~~i~~~~~~~~-~~--~l~~iip~ll~~l~~~~~~-~~~~~~~~l~~lv~~---~~~~i~--~y~~~ 940 (1880)
+.. ....+..|+..+.....+.. .+ -....+|.|+..+...... .+..++..|+.+... .++.+. ..+|.
T Consensus 549 ~~~-~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~ 627 (810)
T 3now_A 549 TEK-GKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSK 627 (810)
T ss_dssp CHH-HHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred CHH-HHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Confidence 643 45678889998887643321 11 1234789999888744232 334566777776642 233332 34566
Q ss_pred HHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccc--hhhHHHHHHhcccccccCchhhHHHHHHHHHHH
Q 000194 941 LFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHL--PVILPCCIQVLSDAERCNDYTYVLDILHTLEVF 1018 (1880)
Q Consensus 941 i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl--~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~ 1018 (1880)
++.++.. .+ +..+.....++..++.. .+....+. ...+|.++..++..+.. -+..+..++..+...
T Consensus 628 Lv~LL~s----~~------~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~-vq~~Aa~ALanLt~~ 695 (810)
T 3now_A 628 IEYYLME----DH------LYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEE-TATACAGALAIITSV 695 (810)
T ss_dssp HHHHHHS----CC------TTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHcC----CC------HHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHH-HHHHHHHHHHHHhCC
Confidence 6666542 21 11233677777777642 22333344 36889999999753211 122233344433331
Q ss_pred hc-chhhhh--hhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccccc-ccch--hHhHHHHHHHhhCCC---CHHHHHHHH
Q 000194 1019 GG-TLDEHM--HLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQ-VTGH--ISSLVHHLKLVLDGK---NDELRKDAV 1089 (1880)
Q Consensus 1019 g~-~~~~~~--~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~~~-~~~~--~~~ii~~l~~~l~~~---~~~l~~~al 1089 (1880)
.. .....+ .-.+|.+++++..+ ..++|..|+.++..++.+.+ ...+ -..++++|..++... +.++.+.|+
T Consensus 696 s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al 774 (810)
T 3now_A 696 SVKCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVAT 774 (810)
T ss_dssp CHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHH
Confidence 11 122222 35789999999764 78899999999999876421 1111 124577888888654 578999999
Q ss_pred HHHHHHHH
Q 000194 1090 DALCCLAH 1097 (1880)
Q Consensus 1090 ~~L~~l~~ 1097 (1880)
++|..+..
T Consensus 775 ~aL~~ll~ 782 (810)
T 3now_A 775 QCLAAAER 782 (810)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988864
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.33 E-value=9.3e-08 Score=125.02 Aligned_cols=715 Identities=10% Similarity=0.057 Sum_probs=384.9
Q ss_pred HHHHHHHHHHHcCCC--Cchh-hHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-CChhhhhhHHHHHhHhhc
Q 000194 23 LDALNRILADLCTHG--NPKE-GASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-NDAAENLGALRAIDELID 98 (1880)
Q Consensus 23 ~~~~~~l~~~l~s~~--~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~~~~~r~~~i~ai~~Li~ 98 (1880)
+.-+++.|+=+.+.. .+++ +|+.-|-- .+||-.+-. .-|-+.-..++.+++++ ++.+...+|+-.++.++.
T Consensus 5 ~~kv~~m~~i~~~~~~~~~~~~~a~~nl~v----l~re~aga~-~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~ 79 (810)
T 3now_A 5 STKVKQMMDLTFDLATPIDKRRAAANNLVV----LAKEQTGAE-LLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCE 79 (810)
T ss_dssp HHHHHHHHHHHHSSCCSSHHHHHHHHHHHH----HSSCHHHHH-HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcccccCHHHHHHHHhhcee----eeccccchH-HHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHh
Confidence 455777777776443 2333 47554433 345532221 11223345677888877 788899999999999986
Q ss_pred cccCcchhHHHHH-HHHHHhhcccCCChHHHHHHHHHHHHHhhh--CCCCc------h-------hHHHHHHHHHHhhhc
Q 000194 99 VALGENASKVSKF-SNYMRTVFEVKRDREILVLASKVLGHLARA--GGAMT------A-------DEVEFQVKMALDWLR 162 (1880)
Q Consensus 99 ~~~~~~~~~~~~~-~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~--~g~~~------~-------~~v~~~~~~~~~~l~ 162 (1880)
.........+..+ .+++..++. +.+.++...++.++..+..+ |+... . .-+...+..+++-+.
T Consensus 80 ~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 158 (810)
T 3now_A 80 NSVERTKGVLTELGVPWFMRVLD-QKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSIT 158 (810)
T ss_dssp TCHHHHHHHHHHSCHHHHHHHHH-CCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhh
Confidence 6311111111111 245666664 56888888888888877553 32221 1 123334444444454
Q ss_pred CCC-cchhHHHHHHHHHHHHhhcCccchh----ch-HHHHHHHHH---HhcCC--------chhHHHHHHHHHHHHHHHH
Q 000194 163 GDR-VEYRRFAAVLILKEMAENASTVFNV----HV-AEFVDAIWV---ALRDP--------TLAVRERAVEALRACLRVI 225 (1880)
Q Consensus 163 ~~~-~~~~R~aA~~~l~~la~~~p~~l~~----~l-~~i~~~i~~---~l~D~--------~~~VR~aA~~al~~~~~~i 225 (1880)
+.+ ....|-+++.+ +..+.|..-.. .+ ..=+..++. .+-+. .+..|..|.-++..+.+.+
T Consensus 159 ~~~~~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~ 235 (810)
T 3now_A 159 DRTISGAARDGVIEL---ITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENM 235 (810)
T ss_dssp CTTSCHHHHHHHHHH---HHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTC
T ss_pred ccccChhhHHHHHHH---HHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHh
Confidence 433 23456666555 45555542110 00 001112222 22232 3578999988888876654
Q ss_pred hhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH--HHHHHHHHHHhhcchhHHHHHHHH
Q 000194 226 EKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY--REVAEIVLRYLEHRDRLVRLSITS 303 (1880)
Q Consensus 226 ~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~--~~i~~~ll~~~~~~~~~Vr~~~~~ 303 (1880)
.- ...+..+...+-+-+...+..++ .+..-.|.-++..++....+.-..-+ +..++.++.++.+.++.+|+.+++
T Consensus 236 ~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~ 312 (810)
T 3now_A 236 YY--DEAKARFTDQIDEYIKDKLLAPD-MESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACE 312 (810)
T ss_dssp CS--HHHHHHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred cc--chhHHHHHHHHHHHHHHHhccCC-hHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHH
Confidence 31 11233333333333344454443 45556667788777776554333322 246778888889999999999999
Q ss_pred HhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh--hhhh----hhHHHHHHHHhhcCC-
Q 000194 304 LLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE--LFHY----LPTITSHLREAIAPR- 374 (1880)
Q Consensus 304 ~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~--~~p~----l~~i~~~l~~~l~~~- 374 (1880)
+++.++.. + ...+.....-++.|...+++.. .|..|..+|..++...+.+ ..++ ++++++.+...|...
T Consensus 313 al~~aa~~-~-~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~ 390 (810)
T 3now_A 313 CLIAASSK-K-DKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPG 390 (810)
T ss_dssp HHHHHTTS-H-HHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSS
T ss_pred HHHHHcCC-c-HHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCC
Confidence 99997654 2 2222122223488888887543 3667888888887543311 1122 456778888888655
Q ss_pred -CCCCCchHHHHHHHHHHHhCCCchHHH---HHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC
Q 000194 375 -RGKPSLEALACVGNIARAMGPVMEPHV---RGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKS 450 (1880)
Q Consensus 375 -~~~~~~~a~~~l~~la~~~g~~~~~~l---~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~ 450 (1880)
+.+.+..++.+++.++. ++.....+ ..++|.|+.. +. . -.+.++.+.+..+..+..+.
T Consensus 391 ~d~~v~~~AveaLayLS~--~~~vk~~lv~d~g~Ip~LV~L---------L~----s---~d~~i~~~al~~L~NLt~~~ 452 (810)
T 3now_A 391 KDKDIRRWAADGLAYLTL--DAECKEKLIEDKASIHALMDL---------AR----G---GNQSCLYGVVTTFVNLCNAY 452 (810)
T ss_dssp CCSSHHHHHHHHHHHHTT--SHHHHHHHHHCHHHHHHHHHH---------HH----T---TCGGGHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHHHHhC--CcHHHHHHHHccchHHHHHHH---------hC----C---CChHHHHHHHHHHHHHcCCc
Confidence 33344567888887754 22222211 1344444321 11 0 01234445555555443332
Q ss_pred CCCCCCCCCCC-C-CCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHH
Q 000194 451 HYSQARPAATP-I-RGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCK 528 (1880)
Q Consensus 451 ~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~ 528 (1880)
.-. .+.+... . .......+. ....++.+....=++.+..- | +-..+..++.++++.+|..|+.+++.
T Consensus 453 d~q-~~~~~l~~la~~s~~~v~~-~~~ld~~~~v~~r~~~Vvea---G------aVp~LV~LL~s~s~~vqe~Aa~aL~N 521 (810)
T 3now_A 453 EKQ-EMLPEMIELAKFAKQHIPE-EHELDDVDFINKRITVLANE---G------ITTALCALAKTESHNSQELIARVLNA 521 (810)
T ss_dssp CCC-CCCCSCGGGTTTTCCSCCC-SSCHHHHHHHHHHHHHHHHT---T------HHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred hhh-hhhHHHHHHHHHhhccCcc-ccccccHHHHHHHHHHHHHC---c------CHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 110 0000000 0 000000000 00000000000000111110 1 11233466788899999999999988
Q ss_pred hhhccCCCccccccCCccccccccchhHHH-HHHHHHHHHHHhcCCChhHHHHHHHhccC-CCCcchhh---c--cHhhH
Q 000194 529 LVANSFSGVSFTQFGASRSNRTGGKRRRLI-EELVEKLLIAAVADADVTVRHSIFSSLYG-NRGFDDFL---A--QADCL 601 (1880)
Q Consensus 529 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~-~~~fd~~L---~--~~~~l 601 (1880)
+... .. ....++ ..+++.|+.. +.+.++.+|..+..+|.. +..-++.. . ..+.+
T Consensus 522 LA~d-~~-----------------~r~~Vv~~Gaip~Lv~L-L~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aI 582 (810)
T 3now_A 522 VCGL-KE-----------------LRGKVVQEGGVKALLRM-ALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVI 582 (810)
T ss_dssp HHTS-HH-----------------HHHHHHHTTHHHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTH
T ss_pred HcCC-HH-----------------HHHHHHHCCCHHHHHHH-HccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHH
Confidence 8631 10 011111 2345555554 356677788777776631 00001111 0 12468
Q ss_pred HHHHHHhCCC-CHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCc
Q 000194 602 SAIFAALNDE-DFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680 (1880)
Q Consensus 602 ~~L~~~l~D~-~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py 680 (1880)
+.|...++.+ +...+..|+.+|..|+..++....-....-.+..+..+..+ ++...+..|+++|+.++... +....+
T Consensus 583 ppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s-~~~~Vq~~A~~~L~NLa~~~-~~~~~~ 660 (810)
T 3now_A 583 RPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME-DHLYLTRAAAQCLCNLVMSE-DVIKMF 660 (810)
T ss_dssp HHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS-CCTTHHHHHHHHHHHHTTSH-HHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCh-HHHHHH
Confidence 8888888744 44456679999999998764321111111111223333344 56788999999999998532 222233
Q ss_pred h--HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHH--hHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 000194 681 I--APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS--ELMPLIVEALLDGAAVTKREVAVSTLGQ 756 (1880)
Q Consensus 681 ~--~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~--~l~p~l~~~l~d~~~~~~r~~Al~~Lg~ 756 (1880)
+ ...++.|+..+... +..++..++.+|+.++..........+. ..+|.++..+.+. +.+.+..|+++|+.
T Consensus 661 v~~~g~l~~Lv~LL~s~-----d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~N 734 (810)
T 3now_A 661 EGNNDRVKFLALLCEDE-----DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILN 734 (810)
T ss_dssp HSSSSHHHHHHHGGGCS-----SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHhcCC-----CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 3 24677888877764 7789999999999998743333444443 5889999988865 67899999999999
Q ss_pred HHhhcCcccccCCcchHHHHHHHHHhcCC--CCHHHHHHHHHHHHH---HcccCccc
Q 000194 757 VVQSTGYVITPYNEYPQLLGLLLKMLNGE--LVWSTRREVLKVLGI---MGALDPHA 808 (1880)
Q Consensus 757 l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~--~~~~vr~~~l~~lg~---lgaldp~~ 808 (1880)
++...+.. .-+..-...++.|.++++.. .+.++...|+++|.. .|.++|..
T Consensus 735 L~~~s~e~-~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~~~ 790 (810)
T 3now_A 735 MINAGEEI-AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIERSD 790 (810)
T ss_dssp HHTTCHHH-HHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHhCCHHH-HHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccCCC
Confidence 98753321 11111135778888887543 367788777777654 46666653
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3.7e-11 Score=152.93 Aligned_cols=356 Identities=14% Similarity=0.101 Sum_probs=234.4
Q ss_pred hhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHH--HHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000194 509 LYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIE--ELVEKLLIAAVADADVTVRHSIFSSLY 586 (1880)
Q Consensus 509 ~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1880)
..+.++++.+|..|+.++.+++..... ......+. .+++.|+.....+.++.+|..++.+|.
T Consensus 27 ~~l~s~~~~~r~~A~~~L~~l~~~~~~----------------~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~ 90 (450)
T 2jdq_A 27 EMIFSKSPEQQLSATQKFRKLLSKEPN----------------PPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLT 90 (450)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHSSSS----------------CCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhcCCCC----------------CcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 445677899999999999887642210 00122222 466666665444448999999888874
Q ss_pred CCCC----cchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHH-HHHHHHHHHHhcCCCChHhHHH
Q 000194 587 GNRG----FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREE 661 (1880)
Q Consensus 587 ~~~~----fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~ 661 (1880)
.-.. ....+.....++.|+..++++++++|..|+.+|+.++...+..-...+. ..+..++.-+..+ .+...|..
T Consensus 91 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~v~~~ 169 (450)
T 2jdq_A 91 NIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ-NRLTMTRN 169 (450)
T ss_dssp HHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC-CCHHHHHH
T ss_pred HHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-CCHHHHHH
Confidence 2000 0011223457899999999999999999999999999877532111111 1122233334433 57889999
Q ss_pred HHHHHHHHHHhC-cccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH-HhHHHHHHHHHh
Q 000194 662 SAKLLGCLIRNC-ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVEALL 739 (1880)
Q Consensus 662 a~~~L~~l~~~~-~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~l~p~l~~~l~ 739 (1880)
|+++|+.++... +..-..++..+++.++..+.++ ++.++..++.+++.++....+...... ..++|.+++.+.
T Consensus 170 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 244 (450)
T 2jdq_A 170 AVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS-----DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM 244 (450)
T ss_dssp HHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCC-----CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC
Confidence 999999999765 3333344567778888888764 678888999999888754322221111 357889999888
Q ss_pred cCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCc
Q 000194 740 DGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSH 819 (1880)
Q Consensus 740 d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~ 819 (1880)
+. +..+|..|+.+|+.++...+........ ..+++.|..+++++ ++.+|.+++.+||.++.-.+...+
T Consensus 245 ~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~--------- 312 (450)
T 2jdq_A 245 HN-DYKVVSPALRAVGNIVTGDDIQTQVILN-CSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQ--------- 312 (450)
T ss_dssp CS-CHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHH---------
T ss_pred CC-chhHHHHHHHHHHHHhhCChHHHHHHHH-CccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHH---------
Confidence 65 5789999999999998754332111111 25888899999764 789999999999988642111000
Q ss_pred ccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCc--
Q 000194 820 GEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYL-- 897 (1880)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l-- 897 (1880)
......+++.|+..|++++. ..+..++.++..+.....+....++
T Consensus 313 --------------------------------~~~~~~~l~~L~~~l~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~l~~ 359 (450)
T 2jdq_A 313 --------------------------------TVIDANIFPALISILQTAEF-RTRKEAAWAITNATSGGSAEQIKYLVE 359 (450)
T ss_dssp --------------------------------HHHHTTHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred --------------------------------HHHHCCCHHHHHHHHhcCCH-HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 00011356677888877653 4566788888888765332222222
Q ss_pred chhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Q 000194 898 PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVR 931 (1880)
Q Consensus 898 ~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~ 931 (1880)
..++|.++..++..++.++..++..++.++....
T Consensus 360 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 360 LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 3589999999988888899999999998887544
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.32 E-value=4e-11 Score=137.92 Aligned_cols=190 Identities=14% Similarity=0.168 Sum_probs=160.6
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 000194 163 GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALR-DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMF 241 (1880)
Q Consensus 163 ~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~-D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l 241 (1880)
++++|..|.+|+..|..+++++|....+.+.++++.+...+. |++..||.+|+.+++.+...+.. ....++..++
T Consensus 25 ~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~----~~~~~~~~il 100 (242)
T 2qk2_A 25 EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK----RFSNYASACV 100 (242)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG----GGHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHH
Confidence 468899999999999999999888766778899999999995 99999999999999999876542 2345788999
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHh-hhChhhHHHHH
Q 000194 242 EATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIA-HFLRDRFVTNY 320 (1880)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la-~~~~~~f~~~y 320 (1880)
+.+...+++++ ..+|.++..++..+....+ ++.+++.++..++++++.||..++..|+.++ .+.++.+...|
T Consensus 101 p~ll~~l~d~~-~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~ 173 (242)
T 2qk2_A 101 PSLLEKFKEKK-PNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKL 173 (242)
T ss_dssp HHHHHGGGCCC-HHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHH
T ss_pred HHHHHHHcCCC-HHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHH
Confidence 99999999875 6889999999999987543 4678888888999999999999999999965 44455444568
Q ss_pred HHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh-hhhhhhHH
Q 000194 321 LKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE-LFHYLPTI 363 (1880)
Q Consensus 321 l~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~-~~p~l~~i 363 (1880)
++.++|.+...|.+.. .|..|+.++|.++..+|.+ +.+|++.+
T Consensus 174 l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 174 LKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 9999999999996543 6899999999999999986 77888654
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=99.32 E-value=2.7e-09 Score=145.89 Aligned_cols=394 Identities=10% Similarity=0.131 Sum_probs=241.6
Q ss_pred ChHhHHHHHHHHHHHHHh------CcccccCchHHHHHHHHHHhccCCC-----CC-C--------Chh-HH--HHHHHH
Q 000194 655 DNKCREESAKLLGCLIRN------CERLIRPYIAPIHKALVARLLEGTG-----IN-A--------NNG-II--SGVLVT 711 (1880)
Q Consensus 655 ~~~~r~~a~~~L~~l~~~------~~~~~~py~~~il~~ll~~l~~~~~-----~~-~--------~~~-v~--~~~~~~ 711 (1880)
+.+.-..++.....+++. ....++|++..++.+++.++..+.. .+ . +.+ .. ...-.+
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 444434566666666643 2345678888889999988876531 00 0 111 10 111256
Q ss_pred HHHHHHhcCCchhhhHHhHHHHHHHHHhc-CCchhhHHHHHHHHHHHHhhcCcc-cccCCcchHHHHHHHHHhcC----C
Q 000194 712 VGDLARVGGFGMRQYISELMPLIVEALLD-GAAVTKREVAVSTLGQVVQSTGYV-ITPYNEYPQLLGLLLKMLNG----E 785 (1880)
Q Consensus 712 l~~La~~~g~~~~~~~~~l~p~l~~~l~d-~~~~~~r~~Al~~Lg~l~~~~~~~-i~p~~~~p~ll~~Ll~~L~~----~ 785 (1880)
+..++...|.+ -+..+++.+.+.+.. ..++..|++|+.++|.++.+.... ..|+ .|++++.|++++.. +
T Consensus 437 L~~l~~l~~~~---~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~--l~~vi~~Ll~l~~~~~~~d 511 (1023)
T 4hat_C 437 LVYLTHLNVID---TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRF--VVTVIKDLLDLCVKKRGKD 511 (1023)
T ss_dssp HHHHHHHCHHH---HHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHH--HHHHHHHHHHHHHHCCSHH
T ss_pred HHHHhccCHHH---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHH--HHHHHHHHHHhhhccccCc
Confidence 66666665542 333445555555543 246889999999999998765432 2333 47889988887753 1
Q ss_pred CCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHH
Q 000194 786 LVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRI 865 (1880)
Q Consensus 786 ~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~ 865 (1880)
....+|..++.++|...- +.. ...+ |...+++.|+..
T Consensus 512 ~k~~v~~t~~~~lGry~~---wl~---------------------------------------~~~~-~L~~vl~~L~~~ 548 (1023)
T 4hat_C 512 NKAVVASDIMYVVGQYPR---FLK---------------------------------------AHWN-FLRTVILKLFEF 548 (1023)
T ss_dssp HHHHHHHHHHHHHHTCHH---HHH---------------------------------------HCHH-HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH---HHh---------------------------------------ccHH-HHHHHHHHHHHH
Confidence 223455566677765421 110 0112 346788899999
Q ss_pred hcCCChhhhHHHHHHHHHHHHHHhCCCC--------CCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHH--hHH
Q 000194 866 LRDPSLASYHQKVVGSLMFIFKSMGLGC--------VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQ--HIR 935 (1880)
Q Consensus 866 L~d~s~~~~~~~~~~al~~i~~~~~~~~--------~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~--~i~ 935 (1880)
|.|+.. ....+++.|+..++..++..+ .||+++++..+......-++..+..++.++|.++..++. ...
T Consensus 549 l~~~~~-~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~ 627 (1023)
T 4hat_C 549 MHETHE-GVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERN 627 (1023)
T ss_dssp TTCSCH-HHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred hhcCCH-HHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHH
Confidence 977643 356789999999999876543 479999999888888766666778889999999987752 355
Q ss_pred HhHHHHHHHHHHhhcCCC-----CCcc----cccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchh
Q 000194 936 KYLQELFSLISELWSSFS-----LPAT----NRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYT 1006 (1880)
Q Consensus 936 ~y~~~i~~~i~~~~~~~~-----~~~~----~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~ 1006 (1880)
.++..+++.+.+.|+... .|.- +.......++++...++.++|..|.||+..++|.+++..+...
T Consensus 628 ~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s------ 701 (1023)
T 4hat_C 628 RLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVS------ 701 (1023)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH------
Confidence 688888888887776521 0000 0001223578888889999999999999999999998875311
Q ss_pred hHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc-ccccchhHhHHHHH----HHhhCCCC
Q 000194 1007 YVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR-VQVTGHISSLVHHL----KLVLDGKN 1081 (1880)
Q Consensus 1007 ~~~~il~~l~~~g~~~~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~-~~~~~~~~~ii~~l----~~~l~~~~ 1081 (1880)
..+-.++..-|.....+- ..+.+ ..+|+..++.+...+.. .+.......+++++ +.--....
T Consensus 702 --~~i~~~~~~~g~~~~~~~------~~r~~-----r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~ 768 (1023)
T 4hat_C 702 --SMISAQVAAEGLIATKTP------KVRGL-----RTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNV 768 (1023)
T ss_dssp --HHHHHHHHHHCGGGGGSH------HHHHH-----HHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSC
T ss_pred --HHHHHHHHhCCchhhccH------HHHHH-----HHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCC
Confidence 112223333343332211 11111 23556666655544432 23223333444444 33333334
Q ss_pred HHHH-HHHHHHHHHHHHHhccccccchhHHHHHHHh
Q 000194 1082 DELR-KDAVDALCCLAHALGEDFTIFIPSIHKLLLK 1116 (1880)
Q Consensus 1082 ~~l~-~~al~~L~~l~~~~g~~f~~fip~i~~~l~~ 1116 (1880)
++.| ...+.++..++.++|..+.+.+|.|...+..
T Consensus 769 ~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~ 804 (1023)
T 4hat_C 769 PDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFE 804 (1023)
T ss_dssp GGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 4555 5678899999999999888888888887655
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-10 Score=148.38 Aligned_cols=357 Identities=11% Similarity=0.049 Sum_probs=239.4
Q ss_pred HHHHHHHHcCCCCc-hhhHHHHHHHHHHHHHhhhChHHHHHHHH--HHHHHHHhhhcCC-ChhhhhhHHHHHhHhhcccc
Q 000194 26 LNRILADLCTHGNP-KEGASLALRKHIEEQARDLGGEAFSRFMD--QLYDRISGLLESN-DAAENLGALRAIDELIDVAL 101 (1880)
Q Consensus 26 ~~~l~~~l~s~~~~-~~~aa~~l~~~v~~~~~~~~~~~~~~~~~--~l~~~i~~l~~s~-~~~~r~~~i~ai~~Li~~~~ 101 (1880)
+..+++.|++.+.+ +..|+..|+.++.. +..+. ....+. .+.+.+.++++++ +...|..++.++..+.....
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~---~~~~~-~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~ 97 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSK---EPNPP-IDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNS 97 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHS---SSSCC-HHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcC---CCCCc-HHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH
Confidence 77889999887644 44588888887621 11111 222222 3556666777776 78889999999998875421
Q ss_pred CcchhHH-HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHH
Q 000194 102 GENASKV-SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLILKE 179 (1880)
Q Consensus 102 ~~~~~~~-~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~R~aA~~~l~~ 179 (1880)
......+ ....+.|..++. ++|.+++..|+++|+.++.........+++ ..++.++..+.++.++..|..|+.+|+.
T Consensus 98 ~~~~~~~~~~~i~~L~~lL~-~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 98 LQTRIVIQAGAVPIFIELLS-SEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 1111111 124566777775 568999999999999998752111111222 2456666667655677889999999999
Q ss_pred HHhhc-CccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH-HHHHHHHHHhhccCCCChhHH
Q 000194 180 MAENA-STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW-YYRMFEATQDGLGRNAPVHSI 257 (1880)
Q Consensus 180 la~~~-p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~-~~~~l~~~~~~l~~~~~~~~~ 257 (1880)
++.+. |..-...+..+++.+...+.++++.||..|+.+++.+..... ...... -..+++.+...+.++ +++++
T Consensus 177 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~----~~~~~~~~~~~i~~L~~ll~~~-~~~v~ 251 (450)
T 2jdq_A 177 LCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN----DKIQAVIDAGVCRRLVELLMHN-DYKVV 251 (450)
T ss_dssp HHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH----HHHHHHHHTTTHHHHHHHTTCS-CHHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc----HHHHHHHHcCcHHHHHHHHCCC-chhHH
Confidence 99876 654445568899999999999999999999999987653211 111111 124667777777765 47899
Q ss_pred HHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCC
Q 000194 258 HGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIP 335 (1880)
Q Consensus 258 ~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~ 335 (1880)
..++.+|+.+....++.....++ .+++.++..+++.++.+|+.++.+|+.++...+... +..+ ..+++.++..|.++
T Consensus 252 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L~~~l~~~ 330 (450)
T 2jdq_A 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQI-QTVIDANIFPALISILQTA 330 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHH-HHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH-HHHHHCCCHHHHHHHHhcC
Confidence 99999999988755433222222 367788888889999999999999999997555432 2233 36777888887654
Q ss_pred C--CcchHHHHHHHHHhhch-hhhhhhh-hHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHh
Q 000194 336 A--ERDSGFIALGEMAGALD-GELFHYL-PTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1880)
Q Consensus 336 ~--~r~~a~~alg~la~~v~-~~~~p~l-~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~ 393 (1880)
. .|..|+.+|++++.... +.+...+ ..+++.+.+.+.+.+.+.+..++.+++.++...
T Consensus 331 ~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 331 EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 3 47889999999987632 2222233 347778888886654444567888888888754
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=5.8e-09 Score=136.84 Aligned_cols=472 Identities=12% Similarity=0.101 Sum_probs=266.7
Q ss_pred HHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH
Q 000194 157 ALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW 236 (1880)
Q Consensus 157 ~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~ 236 (1880)
+++.+++.+-+ .|.-+.+.+..+++..|+.+ .-++..+.+.|.|+++.||..|..+++.+.. .+.
T Consensus 75 vik~~~s~~~~-~Krl~Yl~~~~~~~~~~e~~----~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~----------~~~ 139 (618)
T 1w63_A 75 CLKLIASQKFT-DKRIGYLGAMLLLDERQDVH----LLMTNCIKNDLNHSTQFVQGLALCTLGCMGS----------SEM 139 (618)
T ss_dssp HHHHHHSSSHH-HHHHHHHHHHHHCCCCHHHH----HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC----------HHH
T ss_pred HHHHHcCCchH-HHHHHHHHHHHHhCCCcHHH----HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC----------HHH
Confidence 33444444444 45555556777766554432 2456677789999999999999999886521 234
Q ss_pred HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhH
Q 000194 237 YYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRF 316 (1880)
Q Consensus 237 ~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f 316 (1880)
...+++.+...+.+++ ..+|.+|+.++..+....++.+. .+.+.+...+.++++.|+.+++.++..++...++.
T Consensus 140 ~~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~- 213 (618)
T 1w63_A 140 CRDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM- 213 (618)
T ss_dssp HHHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH-
T ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH-
Confidence 5677888888888775 78899999999999887666543 33444555667899999999999999998776542
Q ss_pred HHHHHHHHHHHHHHhhcC----C-----------C--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCC
Q 000194 317 VTNYLKICMNHILTVLRI----P-----------A--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPS 379 (1880)
Q Consensus 317 ~~~yl~~~~~~Ll~~L~~----~-----------~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~ 379 (1880)
.+ ++..++|.+...|.+ . . -+...+.+++.++..-++ .
T Consensus 214 ~~-~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~-~----------------------- 268 (618)
T 1w63_A 214 LA-HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD-S----------------------- 268 (618)
T ss_dssp HH-HHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH-H-----------------------
T ss_pred HH-HHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH-H-----------------------
Confidence 22 334555555554432 0 0 012333333333221100 0
Q ss_pred chHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCH--H-HHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCC
Q 000194 380 LEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLST--T-LVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQAR 456 (1880)
Q Consensus 380 ~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~--~-l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~ 456 (1880)
.+.+.+++..++...- ..-+. . +.++...+.. +..
T Consensus 269 --------------~~~~~~~L~~l~~~~~-~~~~~~~aV~~ea~~~i~~-l~~-------------------------- 306 (618)
T 1w63_A 269 --------------SEAMNDILAQVATNTE-TSKNVGNAILYETVLTIMD-IKS-------------------------- 306 (618)
T ss_dssp --------------HHTTHHHHHHHHHTSC-CSSTHHHHHHHHHHHHHHH-SCC--------------------------
T ss_pred --------------HHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHh-cCC--------------------------
Confidence 0111222222211100 00000 0 0011111100 000
Q ss_pred CCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCC
Q 000194 457 PAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSG 536 (1880)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~ 536 (1880)
+......|.. .+..++.+.+++||..|..++..+....+
T Consensus 307 ---------------------~~~l~~~a~~------------------~L~~~L~~~d~~vr~~aL~~L~~i~~~~p-- 345 (618)
T 1w63_A 307 ---------------------ESGLRVLAIN------------------ILGRFLLNNDKNIRYVALTSLLKTVQTDH-- 345 (618)
T ss_dssp ---------------------CHHHHHHHHH------------------HHHHHHTCSSTTTHHHHHHHHHHHHHHHH--
T ss_pred ---------------------CHHHHHHHHH------------------HHHHHHhCCCCchHHHHHHHHHHHHhhCH--
Confidence 0000011222 22234555677888888777777664322
Q ss_pred ccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC---CCCcchhhccHhhHHHHHHHhCCCCH
Q 000194 537 VSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG---NRGFDDFLAQADCLSAIFAALNDEDF 613 (1880)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~---~~~fd~~L~~~~~l~~L~~~l~D~~~ 613 (1880)
..+......++ .++.|+|..||..+++.+.. ...+ ..+++.+...+.+.+.
T Consensus 346 -------------------~~~~~~~~~i~-~~l~d~d~~Ir~~alelL~~l~~~~nv------~~iv~eL~~~l~~~d~ 399 (618)
T 1w63_A 346 -------------------NAVQRHRSTIV-DCLKDLDVSIKRRAMELSFALVNGNNI------RGMMKELLYFLDSCEP 399 (618)
T ss_dssp -------------------HHHGGGHHHHH-HGGGSSCHHHHHHHHHHHHHHCCSSST------HHHHHHHHHHHHHCCH
T ss_pred -------------------HHHHHHHHHHH-HHccCCChhHHHHHHHHHHHHcccccH------HHHHHHHHHHHHhCCH
Confidence 11222222222 24678888899888887631 1111 2356667777778889
Q ss_pred hHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhc
Q 000194 614 DVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLL 693 (1880)
Q Consensus 614 ~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~ 693 (1880)
++|..++..+|+++...+.....++. .++..+... + ...+.++...+..+++..++. -..++..+...+.
T Consensus 400 e~r~~~v~~I~~la~k~~~~~~~~v~----~ll~lL~~~-~-~~v~~~~~~~l~~ii~~~p~l----~~~~v~~L~~~l~ 469 (618)
T 1w63_A 400 EFKADCASGIFLAAEKYAPSKRWHID----TIMRVLTTA-G-SYVRDDAVPNLIQLITNSVEM----HAYTVQRLYKAIL 469 (618)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHH----HHHHHHHHT-G-GGSCSSHHHHHHHHHHHSCST----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHH----HHHHHHHhc-c-chhHHHHHHHHHHHHhcChhH----HHHHHHHHHHHHh
Confidence 99999999999999987644333333 333333333 2 234445667788888776543 2345666666666
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHhcCC----c---hhhhHHhHHHHHHHHHhc-CCchhhHHHHHHHHHHHHhhcCccc
Q 000194 694 EGTGINANNGIISGVLVTVGDLARVGGF----G---MRQYISELMPLIVEALLD-GAAVTKREVAVSTLGQVVQSTGYVI 765 (1880)
Q Consensus 694 ~~~~~~~~~~v~~~~~~~l~~La~~~g~----~---~~~~~~~l~p~l~~~l~d-~~~~~~r~~Al~~Lg~l~~~~~~~i 765 (1880)
+.. ....+...++.++|+.+..... . +...-..+++.+...+.. ..+..+|..++.+++++....+.
T Consensus 470 ~~~---~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~-- 544 (618)
T 1w63_A 470 GDY---SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC-- 544 (618)
T ss_dssp HCC---SCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS--
T ss_pred ccc---ccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc--
Confidence 532 1334555678899988764321 0 011122344555554432 34678999999999998765432
Q ss_pred ccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcc
Q 000194 766 TPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA 803 (1880)
Q Consensus 766 ~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lga 803 (1880)
. .+.+..++.....+.+.++|..|...+..+..
T Consensus 545 ----~-~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 545 ----T-VNRIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp ----C-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred ----h-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 1 23444455545556689999999988877654
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.2e-11 Score=136.26 Aligned_cols=196 Identities=10% Similarity=0.134 Sum_probs=163.6
Q ss_pred CCCcchhHHHHHHHHHH-HHhhcCccc--hhchHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHHHh-hhchhhHHHHH
Q 000194 163 GDRVEYRRFAAVLILKE-MAENASTVF--NVHVAEFVDAIWVAL-RDPTLAVRERAVEALRACLRVIE-KRETRWRVQWY 237 (1880)
Q Consensus 163 ~~~~~~~R~aA~~~l~~-la~~~p~~l--~~~l~~i~~~i~~~l-~D~~~~VR~aA~~al~~~~~~i~-~r~~~~~~~~~ 237 (1880)
++++|..|.+|+..|.. +++++|... ...+..+++.+...+ .|++..||.+|+.|++++.+.+. .+ +...++
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~---f~~~y~ 102 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG---FSKDYV 102 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT---SCHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc---ccHHHH
Confidence 46888999999999999 999999877 566778999999999 79999999999999999886553 21 222678
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhh-HHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh---
Q 000194 238 YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFM-MSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR--- 313 (1880)
Q Consensus 238 ~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~-~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~--- 313 (1880)
..+++.++..+++.. ..++.++..++..+.+..++.. .++++.+++.++..++++++.+|..++.+|.+++...+
T Consensus 103 ~~llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~ 181 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKK-PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGY 181 (249)
T ss_dssp HHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCS
T ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcc
Confidence 889999999999875 5677888888998888654322 12478899999999999999999999999999997766
Q ss_pred hhHHHHHH-HHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh-hhhhhhHH
Q 000194 314 DRFVTNYL-KICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE-LFHYLPTI 363 (1880)
Q Consensus 314 ~~f~~~yl-~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~-~~p~l~~i 363 (1880)
..|.. |+ +.++|.+...+...+ .|..|+.|+|.++..+|++ +.||++.+
T Consensus 182 ~~l~~-~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 182 STLQR-YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHH-HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred hhHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 45654 89 999999999997654 6999999999999999985 88888764
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.7e-07 Score=123.92 Aligned_cols=373 Identities=12% Similarity=0.116 Sum_probs=219.3
Q ss_pred CCChhHHHHHHHhcc---CC-CCcchh-----hccHhhHHHHHHHhC-----CCCHhHHHHHHHHHHhhhcCCcccccHH
Q 000194 572 DADVTVRHSIFSSLY---GN-RGFDDF-----LAQADCLSAIFAALN-----DEDFDVREYAISVAGRLSEKNPAYVLPA 637 (1880)
Q Consensus 572 d~~~~vR~~~l~~l~---~~-~~fd~~-----L~~~~~l~~L~~~l~-----D~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1880)
+++|..+.+++.+|. +. ..-..+ -..|.+++.+...++ ++++.||..+++++||.++..... ..+
T Consensus 454 ~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~-~~~ 532 (980)
T 3ibv_A 454 ENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE-SAA 532 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-CTT
T ss_pred CCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-chh
Confidence 356788888777643 21 110000 012346666666654 889999999999999988754221 022
Q ss_pred HHHHHHHHHH--HHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCC--------------
Q 000194 638 LRRHLIQLLT--YLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINAN-------------- 701 (1880)
Q Consensus 638 l~~~l~~~l~--~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~-------------- 701 (1880)
+..+|.-++. .+.+ ++.++|..|+.+|..+++.++..+.||++.|+..+.+.+.-...+...
T Consensus 533 l~~~L~~ll~~~gl~~--~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~ 610 (980)
T 3ibv_A 533 IPALIEYFVGPRGIHN--TNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRN 610 (980)
T ss_dssp HHHHHHHHTSTTTTTC--CCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHT
T ss_pred HHHHHHHHhccccccC--CChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhccc
Confidence 3333333444 3333 357889999999999999999999999999999888776632111000
Q ss_pred --hhHHHHHHHHHHHHHHhcCC---chhhhHHhHHHHHHHHHh----cCCch-hhH---HHHHHHHHHHHhhcCcc---c
Q 000194 702 --NGIISGVLVTVGDLARVGGF---GMRQYISELMPLIVEALL----DGAAV-TKR---EVAVSTLGQVVQSTGYV---I 765 (1880)
Q Consensus 702 --~~v~~~~~~~l~~La~~~g~---~~~~~~~~l~p~l~~~l~----d~~~~-~~r---~~Al~~Lg~l~~~~~~~---i 765 (1880)
.+-...+++++|.++...+. .-..|+..+++.+++.+. ...+. +.+ ...+.++|.+++..... .
T Consensus 611 ~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~ 690 (980)
T 3ibv_A 611 SDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEE 690 (980)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CC
T ss_pred CCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCC
Confidence 11245678999999987653 566788888888777654 11111 111 13467788888765332 1
Q ss_pred ccC-CcchHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcc-cCccchhhccccCCCcccccccCCCCCCCCCCCcccccc
Q 000194 766 TPY-NEYPQLLGLLLKMLNG-ELVWSTRREVLKVLGIMGA-LDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMD 842 (1880)
Q Consensus 766 ~p~-~~~p~ll~~Ll~~L~~-~~~~~vr~~~l~~lg~lga-ldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (1880)
.|. ..+-+.++.++..+.. ..+..+|.++.+++..+-. +.+ +
T Consensus 691 ~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~-----------------------------------~ 735 (980)
T 3ibv_A 691 VAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGP-----------------------------------D 735 (980)
T ss_dssp CSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHH-----------------------------------H
T ss_pred CcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH-----------------------------------h
Confidence 111 0122555566555642 3468899999888876421 100 0
Q ss_pred cCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHH----hcC---Cc--
Q 000194 843 LWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTV----RTC---DD-- 913 (1880)
Q Consensus 843 l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l----~~~---~~-- 913 (1880)
+. | +.+.++..|+..++-. .+...+..+..++...|..+.|.+..+++.++..+ ... ++
T Consensus 736 ~~---p-----~lp~~i~~ll~~~~~~----e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~ 803 (980)
T 3ibv_A 736 ML---P-----KVPQLISILLNSIDMN----ELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDA 803 (980)
T ss_dssp HT---T-----THHHHHHHHHHHCCTT----THHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHH
T ss_pred HH---H-----HHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 00 0 2344555555433322 24466777888888888888888888888877643 221 12
Q ss_pred ----chhHHHHHHHHHHHHHH------HHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhh-----
Q 000194 914 ----YLKDYITWKLGTLVSIV------RQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALN----- 978 (1880)
Q Consensus 914 ----~~~~~~~~~l~~lv~~~------~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~----- 978 (1880)
.++..++..+..++..- .+.-+++++.++..+..+-.....+. .+-.++.++..++...|
T Consensus 804 r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~-----~~K~a~~~l~~~v~~~~~~~~~ 878 (980)
T 3ibv_A 804 VKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPA-----TQKSSIALVSKMVSLWGGKDGI 878 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CH-----HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChH-----HHHHHHHHHHHHHHHHCCCCcc
Confidence 14444555555544411 12225678888877776644322121 12267778888776654
Q ss_pred hhhhccchhhHHHHHHhcccc
Q 000194 979 DEFRTHLPVILPCCIQVLSDA 999 (1880)
Q Consensus 979 ~~f~~yl~~l~p~ll~~l~~~ 999 (1880)
..|..|+-.++|.+.....++
T Consensus 879 ~gf~~f~~~~~~~~f~~p~~~ 899 (980)
T 3ibv_A 879 AGFENFTLSLTPLCFEMPVNP 899 (980)
T ss_dssp CCHHHHHHHHHHHHHHGGGC-
T ss_pred hHHHHHHHHHHHHHHHhhcCC
Confidence 248887666899888887543
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.26 E-value=7.2e-11 Score=153.41 Aligned_cols=356 Identities=12% Similarity=0.103 Sum_probs=235.1
Q ss_pred hhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHH-HHHHHHHHHHHhcCC-ChhHHHHHHHhc
Q 000194 508 VLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI-EELVEKLLIAAVADA-DVTVRHSIFSSL 585 (1880)
Q Consensus 508 ~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~~Ll~~~~~d~-~~~vR~~~l~~l 585 (1880)
...+.++++.+|..|+.++.+++...... ....++ ..+++.|+.. +.++ ++.+|..++.+|
T Consensus 93 v~~L~s~~~~~~~~A~~~L~~ll~~~~~~----------------~~~~~~~~g~i~~Lv~~-L~~~~~~~v~~~A~~~L 155 (530)
T 1wa5_B 93 TQQLNSDDMQEQLSATVKFRQILSREHRP----------------PIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWAL 155 (530)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHTCCSSSC----------------SHHHHHHTTCHHHHHHT-TSTTSCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCCCCc----------------cHHHHHHCCCHHHHHHH-hCCCCCHHHHHHHHHHH
Confidence 34567778999999999998887432100 011111 2355666654 4565 899999988887
Q ss_pred cCCCC----cchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHH
Q 000194 586 YGNRG----FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREE 661 (1880)
Q Consensus 586 ~~~~~----fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~ 661 (1880)
..-.. ....+.....++.|..++.+++.+||..|+.+|+.++...|..-...+..-.+..+..+..+ .+...+..
T Consensus 156 ~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~ 234 (530)
T 1wa5_B 156 TNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRT 234 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHH
T ss_pred HHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHH
Confidence 52111 11122234568889999999999999999999999998764321111111112223333334 57788999
Q ss_pred HHHHHHHHHHhC-cccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHH-hHHHHHHHHHh
Q 000194 662 SAKLLGCLIRNC-ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS-ELMPLIVEALL 739 (1880)
Q Consensus 662 a~~~L~~l~~~~-~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~-~l~p~l~~~l~ 739 (1880)
|+++|+.++... +..-......+++.|+..+.++ ++.++..++.+|+.++....+.....+. .++|.++..+.
T Consensus 235 a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-----d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~ 309 (530)
T 1wa5_B 235 ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-----DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309 (530)
T ss_dssp HHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-----CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC-----CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC
Confidence 999999999765 3333344556778888888764 6889999999999998644333333333 67899999998
Q ss_pred cCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCc
Q 000194 740 DGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSH 819 (1880)
Q Consensus 740 d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~ 819 (1880)
+. +..+|..|+.+|+.++...+........ ..+++.|+.+|+++ ++.+|.+++.+|+.++.-.+...+
T Consensus 310 ~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~--------- 377 (530)
T 1wa5_B 310 HE-STLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQ--------- 377 (530)
T ss_dssp CS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH---------
T ss_pred CC-ChhhHHHHHHHHHHHHcCCHHHHHHHHH-cchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHH---------
Confidence 65 5789999999999998654322111111 35788899999765 789999999999998642221100
Q ss_pred ccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCC--CCCCCc
Q 000194 820 GEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGL--GCVPYL 897 (1880)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~--~~~~~l 897 (1880)
.+...-+++.|+.+|++++. ..+..++.++..+....+. ....++
T Consensus 378 --------------------------------~~~~~~~l~~L~~lL~~~~~-~v~~~a~~aL~~l~~~~~~~~~~~~~l 424 (530)
T 1wa5_B 378 --------------------------------AVIDANLIPPLVKLLEVAEY-KTKKEACWAISNASSGGLQRPDIIRYL 424 (530)
T ss_dssp --------------------------------HHHHTTCHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHTTTCTHHHHHH
T ss_pred --------------------------------HHHHCCCHHHHHHHHhcCCH-HHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 00011245667777776653 4566788888888876443 222233
Q ss_pred --chhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Q 000194 898 --PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVR 931 (1880)
Q Consensus 898 --~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~ 931 (1880)
..++|.++..+...++.++..++..|..++....
T Consensus 425 ~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 425 VSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 3489999999988888889999888888887554
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-07 Score=127.81 Aligned_cols=775 Identities=11% Similarity=0.112 Sum_probs=402.1
Q ss_pred HHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh-cCc
Q 000194 108 VSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN-AST 186 (1880)
Q Consensus 108 ~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~-~p~ 186 (1880)
+..+...+..+..+ +.+.++.|-+.|..+-..++... .+...|....+...|+.|+..|+..... +..
T Consensus 15 v~~Le~av~~ly~p--~~~~r~~A~~~L~~~q~sp~aw~---------~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~ 83 (1023)
T 4hat_C 15 IALLDQVVSTFYQG--SGVQQKQAQEILTKFQDNPDAWQ---------KADQILQFSTNPQSKFIALSILDKLITRKWKL 83 (1023)
T ss_dssp HHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHCTTGGG---------GHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHcCccHHH---------HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 44556666666643 34578888888888877644321 1223333344567888888888876653 322
Q ss_pred cchhchHHHHHHHHHHh----cCC-----chhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHH
Q 000194 187 VFNVHVAEFVDAIWVAL----RDP-----TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSI 257 (1880)
Q Consensus 187 ~l~~~l~~i~~~i~~~l----~D~-----~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 257 (1880)
.=......+-..++..+ .+| .+.||..-+.++..++. ++-. ..| +.+++.+...++++ ....
T Consensus 84 L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~----~~~p--~~W-p~~l~dL~~~l~~~--~~~~ 154 (1023)
T 4hat_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILK----QEWP--QNW-PEFIPELIGSSSSS--VNVC 154 (1023)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHH----HHTT--TTC-TTHHHHHHHHTTTC--HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHH----HhCh--hhc-hHHHHHHHHHhcCC--HHHH
Confidence 21222233333333333 343 24555556666555443 2210 123 34666666666543 3456
Q ss_pred HHHHHHHHHHHHcc-----h-----------hhhHHHHHHHHHHHHHHhh-cchhHHHHHHHHHhHhHhhhChhhHHHHH
Q 000194 258 HGSLLAVGELLRNT-----G-----------EFMMSRYREVAEIVLRYLE-HRDRLVRLSITSLLPRIAHFLRDRFVTNY 320 (1880)
Q Consensus 258 ~~al~~l~~ll~~~-----~-----------~~~~~~~~~i~~~ll~~~~-~~~~~Vr~~~~~~i~~la~~~~~~f~~~y 320 (1880)
...+.+|..|.+-. . +.|...++.++..+...++ ..++.+..+++.++.....|.+-..+-
T Consensus 155 ~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~-- 232 (1023)
T 4hat_C 155 ENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIY-- 232 (1023)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHH--
T ss_pred HHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhc--
Confidence 66677776665521 1 2345566666666666654 356778888999999988887754321
Q ss_pred HHHHHHHHH-HhhcCCCCcchHHHHHHHHHh-hc-hh--hhh----hhhhHHHHHH-HHhh----------cCCCCCCCc
Q 000194 321 LKICMNHIL-TVLRIPAERDSGFIALGEMAG-AL-DG--ELF----HYLPTITSHL-REAI----------APRRGKPSL 380 (1880)
Q Consensus 321 l~~~~~~Ll-~~L~~~~~r~~a~~alg~la~-~v-~~--~~~----p~l~~i~~~l-~~~l----------~~~~~~~~~ 380 (1880)
-..+++.++ ..|..++.|..|.+||..++. .. +. .+. ..++.+++.+ ...+ .... ....
T Consensus 233 ~~~ll~~l~~~~L~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~-~~D~ 311 (1023)
T 4hat_C 233 ETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANAN-GNDQ 311 (1023)
T ss_dssp SSSHHHHHHTHHHHSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTC-TTHH
T ss_pred chhHHHHHHHHHcCCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccc-cchH
Confidence 146777777 777777789999999999876 22 22 122 2233444444 2211 1111 1112
Q ss_pred hHHHHHHHHHHHhCC----------CchHHHHHHHHHHHhc-CCC-HH----HHHHHHHHHHhCC---CCh---HHHHHH
Q 000194 381 EALACVGNIARAMGP----------VMEPHVRGLLDIMFSA-GLS-TT----LVDALEQITVSIP---SLL---PTIQDR 438 (1880)
Q Consensus 381 ~a~~~l~~la~~~g~----------~~~~~l~~ll~~l~~~-~ls-~~----l~~~l~~i~~~~p---~l~---~~i~~~ 438 (1880)
..+..++.+...+|+ .+.+.+..++..|+.+ +.. .+ ..+.+..+.+.+- ... ..+..+
T Consensus 312 e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~ 391 (1023)
T 4hat_C 312 SFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQ 391 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 334444444333332 2234444445566664 332 22 2244555554321 111 122223
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccc-ccc-CCchhHH---HHHHhhccc-ccCCCcchhhHHHHHhhhcc
Q 000194 439 LLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQV-SDL-NGSAPVQ---LALQTLARF-NFKGHDLLEFARDSVVLYLD 512 (1880)
Q Consensus 439 ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~---~Al~~L~~~-~~~~~~l~~~v~~~~~~~l~ 512 (1880)
|...+ +.+-.++. ..... .+...++ ++. .|.+... ..=++|... ...+....+.+.+.+...+.
T Consensus 392 L~~vl---i~km~~P~----e~~iv---e~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~ 461 (1023)
T 4hat_C 392 LRLVI---IENMVRPE----EVLVV---ENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQID 461 (1023)
T ss_dssp HHHHH---HHSCCCCT----TCCEE---ECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHS
T ss_pred HHHHH---HHhcCCCc----ccccC---CCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 33322 33322221 00000 0000001 000 0111000 000222211 01111122222222222333
Q ss_pred C--CChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhc----CCChhHHHHHHHhcc
Q 000194 513 D--EDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVA----DADVTVRHSIFSSLY 586 (1880)
Q Consensus 513 ~--~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~----d~~~~vR~~~l~~l~ 586 (1880)
+ .++..|.||.-+.+.+...... ......+..+++.|+...-. |+.+.||.+++-.++
T Consensus 462 ~~~~~W~~~EA~~~a~gaIa~~~~~----------------~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lG 525 (1023)
T 4hat_C 462 GSEWSWHNINTLSWAIGSISGTMSE----------------DTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVG 525 (1023)
T ss_dssp STTCCHHHHHHHHHHHHHTTTSSCH----------------HHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCc----------------hhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHH
Confidence 3 5789999988888776531110 01345677777777664321 456677777777775
Q ss_pred CCCCcchhhc-c----HhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccc--------cHHHHHHHHHHHHHHhcCC
Q 000194 587 GNRGFDDFLA-Q----ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV--------LPALRRHLIQLLTYLEQSS 653 (1880)
Q Consensus 587 ~~~~fd~~L~-~----~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v--------~p~l~~~l~~~l~~l~~~~ 653 (1880)
++-+++. + +.++..|+..++|+++.|+..|..++..+++.+...+ .|++..++..+..... .
T Consensus 526 ---ry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~-~- 600 (1023)
T 4hat_C 526 ---QYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTA-D- 600 (1023)
T ss_dssp ---TCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHT-T-
T ss_pred ---HHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHH-h-
Confidence 4444443 2 3467778888899999999999999999998765433 4677765544444333 3
Q ss_pred CChHhHHHHHHHHHHHHHhCccc--ccCchHHHHHHHHHHhccCC-----CCC--CC---hhHHHHHHHHHHHHHHhcCC
Q 000194 654 ADNKCREESAKLLGCLIRNCERL--IRPYIAPIHKALVARLLEGT-----GIN--AN---NGIISGVLVTVGDLARVGGF 721 (1880)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~~~--~~py~~~il~~ll~~l~~~~-----~~~--~~---~~v~~~~~~~l~~La~~~g~ 721 (1880)
-+.+.+....++++.++++.+.. ...|+..+++.+...+..-. .+. .+ ......++.|++.++...|.
T Consensus 601 l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~ 680 (1023)
T 4hat_C 601 LQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGA 680 (1023)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcH
Confidence 45677788999999999987633 34467666666665543210 000 01 22345678888889999999
Q ss_pred chhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000194 722 GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 722 ~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~l 801 (1880)
.+.|++..++|.+++..+-- -..+...+...|..+. +.| .+.. + ..+|+++++.+...
T Consensus 681 ~f~~~~~~i~~~~l~~y~~~---------s~~i~~~~~~~g~~~~---~~~-~~r~----~-----r~ik~~il~l~~~~ 738 (1023)
T 4hat_C 681 DFYPQLGHIYYNMLQLYRAV---------SSMISAQVAAEGLIAT---KTP-KVRG----L-----RTIKKEILKLVETY 738 (1023)
T ss_dssp GGHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHCGGGG---GSH-HHHH----H-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhCCchhh---ccH-HHHH----H-----HHHHHHHHHHHHHH
Confidence 99999999999988776521 1122333333343321 112 2221 2 25778888877653
Q ss_pred cccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHH
Q 000194 802 GALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGS 881 (1880)
Q Consensus 802 galdp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~a 881 (1880)
-. + . + +...+. .. +...++..++.--.+......++.+...
T Consensus 739 i~------~-~---~------------------~~~~~~----------~~-~~~~l~~~vl~dY~~~~~~~r~~~vL~l 779 (1023)
T 4hat_C 739 IS------K-A---R------------------NLDDVV----------KV-LVEPLLNAVLEDYMNNVPDARDAEVLNC 779 (1023)
T ss_dssp HH------H-C---S------------------CHHHHH----------HH-THHHHHHHHHHHHHHSCGGGCCHHHHHH
T ss_pred Hh------c-C---C------------------CHHHHH----------HH-hHHHHHHHHHHHHHhCChhhccHHHHHH
Confidence 10 0 0 0 000000 00 1122222322222222222344678888
Q ss_pred HHHHHHHhCCCCCCCcchhhHHHH----HHHhc---CCcchhHHHHHHHHHHHHHHHHhHHH----hHHHHHHHHHHhhc
Q 000194 882 LMFIFKSMGLGCVPYLPKVLPDLF----HTVRT---CDDYLKDYITWKLGTLVSIVRQHIRK----YLQELFSLISELWS 950 (1880)
Q Consensus 882 l~~i~~~~~~~~~~~l~~iip~ll----~~l~~---~~~~~~~~~~~~l~~lv~~~~~~i~~----y~~~i~~~i~~~~~ 950 (1880)
...|+..+|..+.|.++.|+..+. ..+++ ..|+.|..+|..+..++...-..+-. .+..+++.+.-...
T Consensus 780 ~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~ 859 (1023)
T 4hat_C 780 MTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFK 859 (1023)
T ss_dssp HHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcC
Confidence 888999999877777777777654 34543 34678999998888877654333322 33444444443333
Q ss_pred CCCCCcccccccchhHHHHHHHHHHH-----hhhhhhccchhhHHHHHHhcccc
Q 000194 951 SFSLPATNRTYRGLPVLHLVQQLCLA-----LNDEFRTHLPVILPCCIQVLSDA 999 (1880)
Q Consensus 951 ~~~~~~~~~~~~~~~~l~~i~~l~~~-----l~~~f~~yl~~l~p~ll~~l~~~ 999 (1880)
-.. .+....++. .+..++..+... ...-++.|.-.++..++.++.|.
T Consensus 860 h~~-r~~~~~~l~-~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~ 911 (1023)
T 4hat_C 860 HNN-RDVEVNGLQ-IALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDS 911 (1023)
T ss_dssp CCC-HHHHHHHHH-HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCc-hHHHHHHHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 211 111100111 233344444332 11224467777888888888664
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-10 Score=148.43 Aligned_cols=360 Identities=12% Similarity=0.055 Sum_probs=241.4
Q ss_pred HHHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHH-HHHHHHHHhhhcCCC-hhhhhhHHHHHhHhhcc
Q 000194 23 LDALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFM-DQLYDRISGLLESND-AAENLGALRAIDELIDV 99 (1880)
Q Consensus 23 ~~~~~~l~~~l~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~-~~l~~~i~~l~~s~~-~~~r~~~i~ai~~Li~~ 99 (1880)
...+..+++.|.+.+.+.+ .|+..|+.++.. +- .+...... ..+.+.+.+++++++ ...|..|+.++..+...
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~---~~-~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~ 148 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSI---ER-SPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG 148 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTC---SS-SCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC---CC-CchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 3448889999988764444 477777777521 11 01111111 234566677787766 88899999999999764
Q ss_pred ccCcchhHHH--HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHH-HHHHHHHhhhcCCCcchhHHHHHHH
Q 000194 100 ALGENASKVS--KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLI 176 (1880)
Q Consensus 100 ~~~~~~~~~~--~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~R~aA~~~ 176 (1880)
.. +....+. ...+.|..++. +.+.+++..|+++|+.|+..+......+++ ..++.++..|..+.+...|..|+.+
T Consensus 149 ~~-~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~ 226 (528)
T 4b8j_A 149 TS-ENTKVVIDHGAVPIFVKLLG-SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWT 226 (528)
T ss_dssp CH-HHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHH
T ss_pred CH-HHHHHHHhCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHH
Confidence 21 1111111 24566777775 568999999999999998642111111221 2466777777656677888999999
Q ss_pred HHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH-HHHHHHHHHhhccCCCChh
Q 000194 177 LKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW-YYRMFEATQDGLGRNAPVH 255 (1880)
Q Consensus 177 l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~-~~~~l~~~~~~l~~~~~~~ 255 (1880)
|..|+.+.|..-...+..+++.+...|.++++.||..|+.+|+.+... ........ -..+++.+...|.+++ ..
T Consensus 227 L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~----~~~~~~~~~~~g~v~~Lv~lL~~~~-~~ 301 (528)
T 4b8j_A 227 LSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG----TNDKIQAVIEAGVCPRLVELLLHPS-PS 301 (528)
T ss_dssp HHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS----CHHHHHHHHHTTCHHHHHHHTTCSC-HH
T ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC----CHHHHHHHHHcCHHHHHHHHHcCCC-hh
Confidence 999999877655566788999999999999999999999999876532 11111111 1246677777777764 68
Q ss_pred HHHHHHHHHHHHHHcchhhhHHHH-HHHHHHHHHHhhcc-hhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhc
Q 000194 256 SIHGSLLAVGELLRNTGEFMMSRY-REVAEIVLRYLEHR-DRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLR 333 (1880)
Q Consensus 256 ~~~~al~~l~~ll~~~~~~~~~~~-~~i~~~ll~~~~~~-~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~ 333 (1880)
++..|+.+|+.+.....+.....+ ..+++.++..+.+. ++.||+.++.+|+.++...+.....-+-..+++.|+..|.
T Consensus 302 v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~ 381 (528)
T 4b8j_A 302 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ 381 (528)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh
Confidence 899999999998875443332222 23567777788888 9999999999999999765543222122367788888886
Q ss_pred CCC--CcchHHHHHHHHHhhchhhhhhhh--hHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHh
Q 000194 334 IPA--ERDSGFIALGEMAGALDGELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1880)
Q Consensus 334 ~~~--~r~~a~~alg~la~~v~~~~~p~l--~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~ 393 (1880)
... .|..|+.+|++++.........++ ..+++.+...+...+.+....++.+++.|+...
T Consensus 382 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 382 TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 543 478899999999877444444554 356777888886654444456788888887654
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.1e-11 Score=135.87 Aligned_cols=195 Identities=16% Similarity=0.167 Sum_probs=147.4
Q ss_pred HHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHH
Q 000194 74 ISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQ 153 (1880)
Q Consensus 74 i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~ 153 (1880)
+.+.+++++|.+|.+|+.++..++....+-......++.+.|...+..+.+..|+..|+.+++.|
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~l--------------- 84 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALL--------------- 84 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH---------------
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH---------------
Confidence 45677899999999999999999876312111223455555555552133455555555555544
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhH
Q 000194 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWR 233 (1880)
Q Consensus 154 ~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~ 233 (1880)
+...+..|.+|+..++|.|+..++|+++.||++|..|+..++....
T Consensus 85 ---------------------------a~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------- 130 (242)
T 2qk2_A 85 ---------------------------AKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------- 130 (242)
T ss_dssp ---------------------------HHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-------
T ss_pred ---------------------------HHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-------
Confidence 4444467889999999999999999999999999999998865321
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch--hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhh
Q 000194 234 VQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG--EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHF 311 (1880)
Q Consensus 234 ~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~--~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~ 311 (1880)
+..+++.+..++.+. ++.++..++.+++.++...+ .+..+++..+++.++..++++++.||.++..+++.++..
T Consensus 131 ---~~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 131 ---LEAQQESIVESLSNK-NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp ---HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 456778888888876 48999999999999887543 367889999999999999999999999999999999876
Q ss_pred ChhhHHHHHH
Q 000194 312 LRDRFVTNYL 321 (1880)
Q Consensus 312 ~~~~f~~~yl 321 (1880)
.+.+..+.|+
T Consensus 207 vg~~~~~~~l 216 (242)
T 2qk2_A 207 MGDKAVTPLL 216 (242)
T ss_dssp HCHHHHGGGG
T ss_pred cCHHHHHHHH
Confidence 6654333343
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.23 E-value=8.5e-11 Score=152.77 Aligned_cols=357 Identities=15% Similarity=0.126 Sum_probs=236.4
Q ss_pred hhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHH-HHHHHHHHHHHHhcCCC-hhHHHHHHHhc
Q 000194 508 VLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL-IEELVEKLLIAAVADAD-VTVRHSIFSSL 585 (1880)
Q Consensus 508 ~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vl~~Ll~~~~~d~~-~~vR~~~l~~l 585 (1880)
+..+.++++.+|..|+.++++++...... ....+ -..+++.|+... .+++ +.+|..++.+|
T Consensus 80 v~~L~s~~~~~~~~A~~~L~~l~s~~~~~----------------~~~~~~~~g~v~~Lv~lL-~~~~~~~v~~~A~~~L 142 (528)
T 4b8j_A 80 IGGVYSDDNNLQLEATTQFRKLLSIERSP----------------PIEEVIQSGVVPRFVQFL-TREDFPQLQFEAAWAL 142 (528)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHTCSSSC----------------CHHHHHHTTCHHHHHHHH-TCTTCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCCCc----------------hHHHHHHCCCHHHHHHHh-CCCCCHHHHHHHHHHH
Confidence 45567778999999999998887532200 01111 124556666653 4554 99999888877
Q ss_pred cC---C-CCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHH-HHHHHHHHHHhcCCCChHhHH
Q 000194 586 YG---N-RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCRE 660 (1880)
Q Consensus 586 ~~---~-~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~ 660 (1880)
.. . ......+.....++.|...+.+++.+||..|+.+|+.++...|..-...+. ..+..++..+..+ .+...+.
T Consensus 143 ~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~ 221 (528)
T 4b8j_A 143 TNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLR 221 (528)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHH
T ss_pred HHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHH
Confidence 41 0 111111222347889999999999999999999999999766532111111 1223334444344 6788899
Q ss_pred HHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH-HhHHHHHHHHHh
Q 000194 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVEALL 739 (1880)
Q Consensus 661 ~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~l~p~l~~~l~ 739 (1880)
.++++|+.++...+..-......+++.|++.+.+. ++.++..++.+++.++..........+ ..++|.++..|.
T Consensus 222 ~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~ 296 (528)
T 4b8j_A 222 NATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN-----DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 296 (528)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC-----CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc
Confidence 99999999997754433344567788888888764 788999999999988754332222222 257899999998
Q ss_pred cCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCc
Q 000194 740 DGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSH 819 (1880)
Q Consensus 740 d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~ 819 (1880)
+. +..++..|+.+|+.++............ ..+++.|+.+|+++.++.+|.+++.+|+.+.+-++....
T Consensus 297 ~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~--------- 365 (528)
T 4b8j_A 297 HP-SPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQ--------- 365 (528)
T ss_dssp CS-CHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHH---------
T ss_pred CC-ChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHH---------
Confidence 76 5789999999999998754332111111 357888888887654789999999999988642221100
Q ss_pred ccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCc--
Q 000194 820 GEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYL-- 897 (1880)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l-- 897 (1880)
..+..-+++.|+.+|.+++. ..+..++.++..+....++....++
T Consensus 366 --------------------------------~~~~~~~i~~L~~lL~~~~~-~v~~~a~~aL~nl~~~~~~~~~~~l~~ 412 (528)
T 4b8j_A 366 --------------------------------AVINAGIIGPLVNLLQTAEF-DIKKEAAWAISNATSGGSHDQIKYLVS 412 (528)
T ss_dssp --------------------------------HHHHTTCHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred --------------------------------HHHHCCCHHHHHHHHhcCCH-HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 00011235677777776643 4556788888888876333334444
Q ss_pred chhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Q 000194 898 PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVR 931 (1880)
Q Consensus 898 ~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~ 931 (1880)
..+++.++..+...++.++..++..|+.++....
T Consensus 413 ~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 446 (528)
T 4b8j_A 413 EGCIKPLCDLLICPDIRIVTVCLEGLENILKVGE 446 (528)
T ss_dssp TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 4688999999988888888888888888876543
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.21 E-value=8e-08 Score=125.40 Aligned_cols=486 Identities=14% Similarity=0.101 Sum_probs=291.1
Q ss_pred HHHHHHHHHHcCCCC---chhhHHHHHHHHHHHHHh-h--hChHHHHHHHHHH-------------HHHHHhhhcCCChh
Q 000194 24 DALNRILADLCTHGN---PKEGASLALRKHIEEQAR-D--LGGEAFSRFMDQL-------------YDRISGLLESNDAA 84 (1880)
Q Consensus 24 ~~~~~l~~~l~s~~~---~~~~aa~~l~~~v~~~~~-~--~~~~~~~~~~~~l-------------~~~i~~l~~s~~~~ 84 (1880)
.-+..++++++.... +++.-..|+.++=.. .+ + .++..-.+.+-.+ .-.+.+++.+++..
T Consensus 11 ~~l~~~I~~ir~~~~~~~e~~~i~~E~~~ir~~-~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~~ 89 (621)
T 2vgl_A 11 RGLAVFISDIRNCKSKEAEIKRINKELANIRSK-FKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYT 89 (621)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH-HHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSCHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCCHH
Confidence 458899999975432 333355565554332 23 2 2332222222222 13345678899999
Q ss_pred hhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc-C
Q 000194 85 ENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-G 163 (1880)
Q Consensus 85 ~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~-~ 163 (1880)
.|+.|-+++..+.... +..+.-..|.+.+=+. ++++-++..|..+++.+.. +++++..++.+...+. .
T Consensus 90 ~Krl~YL~l~~~~~~~----~e~~~L~iN~l~kDl~-~~n~~ir~lALr~L~~i~~------~e~~~~l~~~v~~~l~~~ 158 (621)
T 2vgl_A 90 EKQIGYLFISVLVNSN----SELIRLINNAIKNDLA-SRNPTFMGLALHCIANVGS------REMAEAFAGEIPKILVAG 158 (621)
T ss_dssp HHHHHHHHHHHSCCCC----HHHHHHHHHHHHHHHH-SCCHHHHHHHHHHHHHHCC------HHHHHHHTTHHHHHHHCS
T ss_pred HHHHHHHHHHHHccCC----cHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhhccCC------HHHHHHHHHHHHHHHhCC
Confidence 9999999999987553 2234444666766665 5688999999999998843 5677777777777763 4
Q ss_pred CCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhh-----------
Q 000194 164 DRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRW----------- 232 (1880)
Q Consensus 164 ~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~----------- 232 (1880)
+.++..|..|+.++..+....|+.+.+ +.+++.+...|.|+++.|+.+|..++..+...-.+.....
T Consensus 159 d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~l 236 (621)
T 2vgl_A 159 DTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRI 236 (621)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 667778888889999999988887653 4667777888999999999999998877643210000000
Q ss_pred ----------------HHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc--------------h----------
Q 000194 233 ----------------RVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT--------------G---------- 272 (1880)
Q Consensus 233 ----------------~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~--------------~---------- 272 (1880)
...|.+..+=.++..+...++.+.+..-...+..++... +
T Consensus 237 l~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~ 316 (621)
T 2vgl_A 237 VTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISL 316 (621)
T ss_dssp HHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHH
Confidence 023443333233333332212222221111222222100 0
Q ss_pred ----hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChh-hHHHHHHHHHHHHHHHhhc-CCC--CcchHHHH
Q 000194 273 ----EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRD-RFVTNYLKICMNHILTVLR-IPA--ERDSGFIA 344 (1880)
Q Consensus 273 ----~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~-~f~~~yl~~~~~~Ll~~L~-~~~--~r~~a~~a 344 (1880)
.-..+.....+..+..++.++++.+|..++..+..++...+. .+ +......++.+|+ +++ .|..|++.
T Consensus 317 i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~----~~~~~~~i~~~L~~d~d~~Ir~~aL~l 392 (621)
T 2vgl_A 317 IIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEA----VKTHIETVINALKTERDVSVRQRAVDL 392 (621)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHH----HHTTHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHH----HHHHHHHHHHHhccCCCHhHHHHHHHH
Confidence 001123344555666667788899999999999998876542 22 3334555666676 332 24556666
Q ss_pred HHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC--CCHHHHHHHH
Q 000194 345 LGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAG--LSTTLVDALE 422 (1880)
Q Consensus 345 lg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~--ls~~l~~~l~ 422 (1880)
+..++ .+ .-++.|+..+.+.+...+...+..++.+++.++..+.+++.-|++.+++.+-..| ...+....+.
T Consensus 393 L~~l~---~~---~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~ 466 (621)
T 2vgl_A 393 LYAMC---DR---SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVI 466 (621)
T ss_dssp HHHHC---CH---HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHH
T ss_pred HHHHc---Ch---hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 55554 22 2356677777776654332224578899999999999899999998888776543 5666677777
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccccc----CCCc
Q 000194 423 QITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNF----KGHD 498 (1880)
Q Consensus 423 ~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~----~~~~ 498 (1880)
.+....|.++......+++.+. . + +. ....+..|+..+|+|.. .++.
T Consensus 467 ~ii~~~~~~~~~~~~~l~~~l~----~-~-----------------------~~-~~~li~~~~wilGEy~~~~~~~~~~ 517 (621)
T 2vgl_A 467 QIVINRDDVQGYAAKTVFEALQ----A-P-----------------------AC-HENLVKVGGYILGEFGNLIAGDPRS 517 (621)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHT----S-S-----------------------SC-CHHHHHHHHHHHHHHTHHHHSSTTS
T ss_pred HHHhCChhHHHHHHHHHHHHHc----C-c-----------------------cc-hHHHHHHHHHHhcchHHHhcccCCC
Confidence 8888889888887777766553 0 0 00 11134567799999821 1111
Q ss_pred -chhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhc--CCCh
Q 000194 499 -LLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVA--DADV 575 (1880)
Q Consensus 499 -l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~--d~~~ 575 (1880)
-.++++. +.+.+...++.||..+..++.+++...++ . .+.+..+++.+.. |+|+
T Consensus 518 ~p~~~l~~-l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~------------------~----~~~i~~~l~~~~~~~~~d~ 574 (621)
T 2vgl_A 518 SPLIQFNL-LHSKFHLCSVPTRALLLSTYIKFVNLFPE------------------V----KATIQDVLRSDSQLKNADV 574 (621)
T ss_dssp CHHHHHHH-HHHHHTTSCHHHHHHHHHHHHHHHHHCGG------------------G----HHHHHHHHSSHHHHSCSSH
T ss_pred CHHHHHHH-HHHHhccCCHHHHHHHHHHHHHHHHHChH------------------H----HHHHHHHHHHHhcCCCCCH
Confidence 1123332 33334456789998888888888754321 1 1223344444455 7777
Q ss_pred hHHHHHHHhc
Q 000194 576 TVRHSIFSSL 585 (1880)
Q Consensus 576 ~vR~~~l~~l 585 (1880)
+||..+...+
T Consensus 575 evrdRA~~y~ 584 (621)
T 2vgl_A 575 ELQQRAVEYL 584 (621)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776665543
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.21 E-value=5.3e-10 Score=145.21 Aligned_cols=357 Identities=11% Similarity=0.063 Sum_probs=235.9
Q ss_pred HHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHH-HHHHHHHHhhhcCC-ChhhhhhHHHHHhHhhccc
Q 000194 24 DALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFM-DQLYDRISGLLESN-DAAENLGALRAIDELIDVA 100 (1880)
Q Consensus 24 ~~~~~l~~~l~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~-~~l~~~i~~l~~s~-~~~~r~~~i~ai~~Li~~~ 100 (1880)
..+..+++.|++.+.+.+ .|+..|+.++.. + ......... ..+.+.+.++++++ ++..|..|+.++..+....
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~---~-~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSR---E-HRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCC---S-SSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC---C-CCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence 347889999988754433 477777776521 1 111111111 23456677888876 7888999999999987642
Q ss_pred cCcchhHH--HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHH-HHHHHHHhhhcCCCcchhHHHHHHHH
Q 000194 101 LGENASKV--SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLIL 177 (1880)
Q Consensus 101 ~~~~~~~~--~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~R~aA~~~l 177 (1880)
. +....+ ....+.|..++. +.+.+++..|+++|+.|+..+......++. ..++.++..+.+ .+...|..|+.+|
T Consensus 163 ~-~~~~~~~~~g~i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L 239 (530)
T 1wa5_B 163 S-AQTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTL 239 (530)
T ss_dssp H-HHHHHHHHTTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHH
T ss_pred H-HHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHH
Confidence 1 111111 122455556664 468999999999999998742111111111 245666666665 5556788899999
Q ss_pred HHHHhhc-CccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHH-HHHHHHHHhhccCCCChh
Q 000194 178 KEMAENA-STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY-YRMFEATQDGLGRNAPVH 255 (1880)
Q Consensus 178 ~~la~~~-p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~-~~~l~~~~~~l~~~~~~~ 255 (1880)
..|+.+. |..-......+++.+...|.++++.||..|+.+|+.+... ......... ..+++.+...+.++ ++.
T Consensus 240 ~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~----~~~~~~~~~~~~~v~~Lv~lL~~~-~~~ 314 (530)
T 1wa5_B 240 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG----PQEAIQAVIDVRIPKRLVELLSHE-STL 314 (530)
T ss_dssp HHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS----CHHHHHHHHHTTCHHHHHHGGGCS-CHH
T ss_pred HHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC----CHHHHHHHHhcCcHHHHHHHHCCC-Chh
Confidence 9999876 6554566778999999999999999999999999887532 111111222 25667777777766 478
Q ss_pred HHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhc
Q 000194 256 SIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLR 333 (1880)
Q Consensus 256 ~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~ 333 (1880)
++..|+.+|+.+....++.....++ .+++.++..+.+.++.||+.++.+|+.++...++.. ..++ ..+++.|+..|.
T Consensus 315 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~-~~~~~~~~l~~L~~lL~ 393 (530)
T 1wa5_B 315 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI-QAVIDANLIPPLVKLLE 393 (530)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH-HHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH-HHHHHCCCHHHHHHHHh
Confidence 8999999999988654433322222 467788888889999999999999999998666433 2233 357777777776
Q ss_pred CCC--CcchHHHHHHHHHhhchh--hhhhhh--hHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHh
Q 000194 334 IPA--ERDSGFIALGEMAGALDG--ELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1880)
Q Consensus 334 ~~~--~r~~a~~alg~la~~v~~--~~~p~l--~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~ 393 (1880)
.+. .|..|+.+|++++...+. +...++ ..+++.+...+.+.+.+.+..++.++..++...
T Consensus 394 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 394 VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 443 478999999999876443 333333 236677777775544333456777887777653
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.5e-09 Score=140.14 Aligned_cols=490 Identities=14% Similarity=0.087 Sum_probs=278.1
Q ss_pred hhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHH--HHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000194 508 VLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL--IEELVEKLLIAAVADADVTVRHSIFSSL 585 (1880)
Q Consensus 508 ~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1880)
..++.++++.||..|+.+++.+...... ...+ ...+++.|+.....+.++++|..++.+|
T Consensus 156 v~lL~~~d~~vr~~A~~~L~~L~~~~~~------------------~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL 217 (780)
T 2z6g_A 156 TKLLNDEDQVVVNKAAVMVHQLSKKEAS------------------RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTL 217 (780)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTSHHH------------------HHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHhCCChh------------------HHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3556678899999999988887642110 0111 1245666666655667899999888877
Q ss_pred cC---CCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHH
Q 000194 586 YG---NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREES 662 (1880)
Q Consensus 586 ~~---~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a 662 (1880)
.. .......+.....++.|+..+.+++..+|..|+.+|+.++...+..-......-.+..+..+..+ ++.+.++.+
T Consensus 218 ~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~-~~~~v~~~a 296 (780)
T 2z6g_A 218 HNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAIT 296 (780)
T ss_dssp HHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-CCHHHHHHH
T ss_pred HHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc-CCHHHHHHH
Confidence 41 00000112223468889999999999999999999999998754321111111122233333344 567778888
Q ss_pred HHHHHHHHHhCcccccCch-HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH--HhHHHHHHHHHh
Q 000194 663 AKLLGCLIRNCERLIRPYI-APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALL 739 (1880)
Q Consensus 663 ~~~L~~l~~~~~~~~~py~-~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~l~p~l~~~l~ 739 (1880)
+.+|..++....+.-.... ...++.|+..+++. ........++.++..|+.. . ...+.+ ..++|.++..+.
T Consensus 297 ~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~----~~~~~~~~a~~aL~~Ls~~-~-~~~~~i~~~g~l~~Ll~lL~ 370 (780)
T 2z6g_A 297 TDCLQILAYGNQESKLIILASGGPQALVNIMRTY----TYEKLLWTTSRVLKVLSVC-S-SNKPAIVEAGGMQALGLHLT 370 (780)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHTS-T-THHHHHHHTTHHHHHGGGTT
T ss_pred HHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC----CHHHHHHHHHHHHHHhhcC-h-HHHHHHHHhchHHHHHHHHc
Confidence 8888877743221111000 13456677777754 1344555666777777642 2 222222 246788888888
Q ss_pred cCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCc
Q 000194 740 DGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSH 819 (1880)
Q Consensus 740 d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~ 819 (1880)
+. +...+..|+++|..++..... ......+++.|+.+|+. .++.+|..++.+|+.++.-.+.....
T Consensus 371 ~~-~~~~~~~a~~~L~~L~~~~~~----~~~~~~~i~~Lv~lL~~-~d~~vr~~A~~aL~~L~~~~~~~~~~-------- 436 (780)
T 2z6g_A 371 DP-SQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNYKNKMM-------- 436 (780)
T ss_dssp CS-CHHHHHHHHHHHHHHHTTCTT----CSCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCHHHHHH--------
T ss_pred CC-chHHHHHHHHHHHHHhccchh----hhhhhhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHH--------
Confidence 66 567888999999999876533 22346789999999975 47899999999999886422110000
Q ss_pred ccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCCh-hhhHHHHHHHHHHHHHHhCCC--C--C
Q 000194 820 GEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSL-ASYHQKVVGSLMFIFKSMGLG--C--V 894 (1880)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~-~~~~~~~~~al~~i~~~~~~~--~--~ 894 (1880)
+ ...-.++.|++.|.+++. ......++.++..|....+.. . .
T Consensus 437 -----------------------i----------~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~ 483 (780)
T 2z6g_A 437 -----------------------V----------CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNA 483 (780)
T ss_dssp -----------------------H----------HTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHH
T ss_pred -----------------------H----------HHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 0 001245677777765322 234445666666553211100 0 0
Q ss_pred CCcchhhHHHHHHHhcCCc-chhHHHHHHHHHHHHHHHH--hHH--HhHHHHHHHHHHhhcCCCCCcccccccchhHHHH
Q 000194 895 PYLPKVLPDLFHTVRTCDD-YLKDYITWKLGTLVSIVRQ--HIR--KYLQELFSLISELWSSFSLPATNRTYRGLPVLHL 969 (1880)
Q Consensus 895 ~~l~~iip~ll~~l~~~~~-~~~~~~~~~l~~lv~~~~~--~i~--~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~ 969 (1880)
-.-...+|.++..++..+. .++..+++.|+.+...-.. .+. ..++.++.++.....
T Consensus 484 v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~------------------- 544 (780)
T 2z6g_A 484 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ------------------- 544 (780)
T ss_dssp HHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHH-------------------
T ss_pred HHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcch-------------------
Confidence 0013457888888877665 6888888888777642111 111 112222222221100
Q ss_pred HHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchh--hhh--hhhHHHHHHhhcCCCcHHH
Q 000194 970 VQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLD--EHM--HLLLPALIRLFKVDAPVDI 1045 (1880)
Q Consensus 970 i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~--~~~--~~ilp~l~~~l~~~~~~~v 1045 (1880)
+.+.....-+.. ..+.+. .....+...+..++..+...-. ..+ .-.+|.++.++... ...+
T Consensus 545 ----------~~~~~aa~al~n--q~~~~~--~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~-~~~v 609 (780)
T 2z6g_A 545 ----------DTQRRTSMGGTQ--QQFVEG--VRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSP-IENI 609 (780)
T ss_dssp ----------HHHHTTC--------CCSTT--CCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCS-CHHH
T ss_pred ----------hHHHHHhhcccc--chhhcc--cChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCC-CHHH
Confidence 000000000000 001010 0011222334444444332110 001 23689999999764 6789
Q ss_pred HHHHHHHHHhhcccccccchhH--hHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcccc
Q 000194 1046 RRAAIETLTRLIPRVQVTGHIS--SLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDF 1103 (1880)
Q Consensus 1046 r~~ai~~l~~l~~~~~~~~~~~--~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f 1103 (1880)
+..|..+|+.++........+. ..+..|...+.+++.++|..|..+|+.++......+
T Consensus 610 ~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~ 669 (780)
T 2z6g_A 610 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDY 669 (780)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhh
Confidence 9999999999875422222222 257788899999999999999999999987655443
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.6e-09 Score=138.03 Aligned_cols=489 Identities=13% Similarity=0.048 Sum_probs=266.5
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHH--HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc
Q 000194 194 EFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY--YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT 271 (1880)
Q Consensus 194 ~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~--~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~ 271 (1880)
..++.+...|+++++.||+.|+.+|+.+...-. .+.... ..+++.+...|.+..+.+++..|+.+|..|....
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-----~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~ 88 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-----SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 88 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-----HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-----hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh
Confidence 346677778889999999999999998764321 122221 3566777777765434678888888888765532
Q ss_pred hhhhHHHHH--HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCCCC--cchHHHHHH
Q 000194 272 GEFMMSRYR--EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIPAE--RDSGFIALG 346 (1880)
Q Consensus 272 ~~~~~~~~~--~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~~--r~~a~~alg 346 (1880)
. ....+. ..++.++.++++.++.+|..++.+|..++........ .+. ...++.|+..|+++.. +..+..+|+
T Consensus 89 ~--~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~-~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~ 165 (644)
T 2z6h_A 89 E--GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM-AVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 165 (644)
T ss_dssp H--HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH-HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred h--hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH-HHHHCCChHHHHHHHCcCCHHHHHHHHHHHH
Confidence 1 111111 3667788888899999999999999999976543221 122 5688899999987653 456778898
Q ss_pred HHHhhchhhhhhhh-hHHHHHHHHhhcCCCCC-CCchHHHHHHHHHHHhCCCchHHHH--HHHHHHHhcCCCHHHHHHHH
Q 000194 347 EMAGALDGELFHYL-PTITSHLREAIAPRRGK-PSLEALACVGNIARAMGPVMEPHVR--GLLDIMFSAGLSTTLVDALE 422 (1880)
Q Consensus 347 ~la~~v~~~~~p~l-~~i~~~l~~~l~~~~~~-~~~~a~~~l~~la~~~g~~~~~~l~--~ll~~l~~~~ls~~l~~~l~ 422 (1880)
.++...++.-.... ...++.+...+.+.... ....+..++..++. .+.....+- ..++.|+..-
T Consensus 166 ~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~--~~~~~~~l~~~g~l~~L~~ll---------- 233 (644)
T 2z6h_A 166 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV--CSSNKPAIVEAGGMQALGLHL---------- 233 (644)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--CTTHHHHHHHTTHHHHHHTTT----------
T ss_pred HHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc--CcccHHHHHHCCCHHHHHHHH----------
Confidence 88864333211111 23455555555433211 11234555555542 222222221 1223222210
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCC--Ccch
Q 000194 423 QITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKG--HDLL 500 (1880)
Q Consensus 423 ~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~--~~l~ 500 (1880)
..- +......|+.+|+.+...+ ....
T Consensus 234 ------~~~----------------------------------------------~~~~~~~a~~~L~nL~~~~~~~~~~ 261 (644)
T 2z6h_A 234 ------TDP----------------------------------------------SQRLVQNCLWTLRNLSDAATKQEGM 261 (644)
T ss_dssp ------TCS----------------------------------------------CHHHHHHHHHHHHHHGGGCTTCCSC
T ss_pred ------hcC----------------------------------------------CHHHHHHHHHHHHHHhhcchhhhhh
Confidence 000 0111122333333221100 0000
Q ss_pred hhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHH-HHHHHHHHHHHhcCCC-hhHH
Q 000194 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI-EELVEKLLIAAVADAD-VTVR 578 (1880)
Q Consensus 501 ~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~~Ll~~~~~d~~-~~vR 578 (1880)
.-+-..+..++.++++++|..|+.+++.+....... ...++ ...++.|+......++ +.+|
T Consensus 262 ~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~-----------------~~~v~~~g~v~~Lv~lL~~~~~~~~v~ 324 (644)
T 2z6h_A 262 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN-----------------KMMVCQVGGIEALVRTVLRAGDREDIT 324 (644)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH-----------------HHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH-----------------HHHHHHcCCHHHHHHHHHccCCcHHHH
Confidence 112233456677889999999998888775422100 00111 1245555555444333 7898
Q ss_pred HHHHHhccC---CCCcchh----hccHhhHHHHHHHhCCCC-HhHHHHHHHHHHhhhcCCcccccHHHH-HHHHHHHHHH
Q 000194 579 HSIFSSLYG---NRGFDDF----LAQADCLSAIFAALNDED-FDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYL 649 (1880)
Q Consensus 579 ~~~l~~l~~---~~~fd~~----L~~~~~l~~L~~~l~D~~-~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l 649 (1880)
..++.+|.. ...-+.. +.....++.|...+.+++ ..+|..|+.+|+.++...... ..... ..+..++..+
T Consensus 325 ~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL 403 (644)
T 2z6h_A 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLL 403 (644)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHH
Confidence 888777741 1010000 112346788888888775 799999999999998754321 11111 1122222222
Q ss_pred hcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH--
Q 000194 650 EQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-- 727 (1880)
Q Consensus 650 ~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-- 727 (1880)
.. .+...|.+|++.++.-. +.+. .....+...++.++..|+... .....+
T Consensus 404 ~~--~~~~vr~~a~~al~n~~---------------------~~~~---~~~~~v~~~a~~aL~~La~~~--~~~~~l~~ 455 (644)
T 2z6h_A 404 VR--AHQDTQRRTSMGGTQQQ---------------------FVEG---VRMEEIVEGCTGALHILARDV--HNRIVIRG 455 (644)
T ss_dssp HH--HHHHHTTC-------------------------------CCS---SCHHHHHHHHHHHHHHHTTSH--HHHHHHHH
T ss_pred hc--cchhhhhHhhhccccch---------------------hccc---ccHHHHHHHHHHHHHHHhcCH--HHHHHHHh
Confidence 22 24455566666544310 0011 013456667777777766432 222222
Q ss_pred HhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHccc
Q 000194 728 SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGAL 804 (1880)
Q Consensus 728 ~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgal 804 (1880)
...+|.+++.+.+. +.+.+..|+.+|+.++...... ........++.|..++++ .++.+|..+..+|+.++.-
T Consensus 456 ~~~i~~Lv~lL~~~-~~~v~~~a~~aL~~l~~~~~~~--~~i~~~g~l~~L~~ll~~-~~~~vr~~A~~aL~~l~~~ 528 (644)
T 2z6h_A 456 LNTIPLFVQLLYSP-IENIQRVAAGVLCELAQDKEAA--EAIEAEGATAPLTELLHS-RNEGVATYAAAVLFRMSED 528 (644)
T ss_dssp TTCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSHHHH--HHHHHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHHTTT
T ss_pred CCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCHHHH--HHHHHcCChhHHHHHHcC-CCHHHHHHHHHHHHHHhcc
Confidence 24688999999876 5678999999999887531110 000111235667777764 4789999999999998643
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.8e-09 Score=139.37 Aligned_cols=457 Identities=15% Similarity=0.091 Sum_probs=277.9
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccc-cHHHHHHHHHHHHH
Q 000194 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV-LPALRRHLIQLLTY 648 (1880)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v-~p~l~~~l~~~l~~ 648 (1880)
+.+++.++|..++..+... -+..+. ...++.|..++.+++..||+.|+.+|+.|+...+... .......+..++..
T Consensus 124 L~~~~~~~r~~a~~~l~~~--~~~~i~-~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~ 200 (780)
T 2z6g_A 124 LAEPSQMLKHAVVNLINYQ--DDAELA-TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 200 (780)
T ss_dssp --CCSCHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCccHHHHHHHHHHHHhh--hHHHHH-hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHH
Confidence 4677888888887776410 012222 4568888888889999999999999999998643210 00011233344445
Q ss_pred HhcCCCChHhHHHHHHHHHHHHHhCcccccCc-hHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH
Q 000194 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPY-IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI 727 (1880)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py-~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~ 727 (1880)
+..+ .+...|..|+.+|..++.... ..... -...++.|+..++++ ++.++..++.+|..++......-....
T Consensus 201 L~~~-~d~~vr~~Aa~aL~~Ls~~~~-~~~~i~~~g~I~~Lv~lL~~~-----~~~v~~~A~~aL~nLa~~~~~~~~~v~ 273 (780)
T 2z6g_A 201 MQNT-NDVETARCTSGTLHNLSHHRE-GLLAIFKSGGIPALVNMLGSP-----VDSVLFHAITTLHNLLLHQEGAKMAVR 273 (780)
T ss_dssp HHHC-CCHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred HcCC-CCHHHHHHHHHHHHHHhCCch-hHHHHHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence 5554 578889999999999765421 11000 114677888888764 688999999999999876544333332
Q ss_pred -HhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCc
Q 000194 728 -SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDP 806 (1880)
Q Consensus 728 -~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp 806 (1880)
...+|.+++.+.+. +...+..|+.+|..++......-..... ...++.|+.++++......+..+..++..+.....
T Consensus 274 ~~g~v~~Lv~lL~~~-~~~v~~~a~~aL~~La~~~~e~~~~i~~-~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~ 351 (780)
T 2z6g_A 274 LAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 351 (780)
T ss_dssp HTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT
T ss_pred HcCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH
Confidence 46899999999864 5667888888888776432110000001 24577788888776666777777777777653111
Q ss_pred cchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHH
Q 000194 807 HAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIF 886 (1880)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~ 886 (1880)
.... ....-+++.|+..|.+.+. .....++.++..+.
T Consensus 352 ~~~~------------------------------------------i~~~g~l~~Ll~lL~~~~~-~~~~~a~~~L~~L~ 388 (780)
T 2z6g_A 352 NKPA------------------------------------------IVEAGGMQALGLHLTDPSQ-RLVQNCLWTLRNLS 388 (780)
T ss_dssp HHHH------------------------------------------HHHTTHHHHHGGGTTCSCH-HHHHHHHHHHHHHH
T ss_pred HHHH------------------------------------------HHHhchHHHHHHHHcCCch-HHHHHHHHHHHHHh
Confidence 0000 0011256778888877653 33445666666666
Q ss_pred HHhCCCCCCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHH---HHhHH--HhHHHHHHHHHHhhcCCCCCcccccc
Q 000194 887 KSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV---RQHIR--KYLQELFSLISELWSSFSLPATNRTY 961 (1880)
Q Consensus 887 ~~~~~~~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~---~~~i~--~y~~~i~~~i~~~~~~~~~~~~~~~~ 961 (1880)
..... ......++|.++..++..++.+++.++..|+.+...- ++.+. .-++.++.++... .+ ++ .
T Consensus 389 ~~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~-~~----~ 458 (780)
T 2z6g_A 389 DAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA---GD-RE----D 458 (780)
T ss_dssp TTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHH---TT-CH----H
T ss_pred ccchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHcc---CC-HH----H
Confidence 54322 2345789999999999888889998888888776521 22221 2355555555431 11 00 1
Q ss_pred cchhHHHHHHHHHHHhhh------hhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhh----hhhHH
Q 000194 962 RGLPVLHLVQQLCLALND------EFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHM----HLLLP 1031 (1880)
Q Consensus 962 ~~~~~l~~i~~l~~~l~~------~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~----~~ilp 1031 (1880)
.+..++.++..++....+ .+. -...+|.+++.|.+.+ ...+...+..++..++..-...- ..++|
T Consensus 459 v~~~Al~aL~nL~~~~~~~~~~~~~v~--~~~~l~~L~~lL~~~~---~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~ 533 (780)
T 2z6g_A 459 ITEPAICALRHLTSRHQDAEMAQNAVR--LHYGLPVVVKLLHPPS---HWPLIKATVGLIRNLALCPANHAPLREQGAIP 533 (780)
T ss_dssp HHHHHHHHHHHTTSSSTTHHHHHHHHH--HTTCHHHHHHTTSTTC---CHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHH--HcCCHHHHHHHhcCCC---hHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHH
Confidence 122456666655431111 111 2345888999997532 22333444455555443222111 23577
Q ss_pred HHHHhhcCC---------------------CcHHHHHHHHHHHHhhcccccccch--hHhHHHHHHHhhCCCCHHHHHHH
Q 000194 1032 ALIRLFKVD---------------------APVDIRRAAIETLTRLIPRVQVTGH--ISSLVHHLKLVLDGKNDELRKDA 1088 (1880)
Q Consensus 1032 ~l~~~l~~~---------------------~~~~vr~~ai~~l~~l~~~~~~~~~--~~~ii~~l~~~l~~~~~~l~~~a 1088 (1880)
.++.++... .+.+++..++.+|+.++........ -...+++|+..+.++++.++..+
T Consensus 534 ~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a 613 (780)
T 2z6g_A 534 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVA 613 (780)
T ss_dssp HHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHH
Confidence 777776421 2356888999999998764221111 13457888999999999999999
Q ss_pred HHHHHHHH
Q 000194 1089 VDALCCLA 1096 (1880)
Q Consensus 1089 l~~L~~l~ 1096 (1880)
..+|+.++
T Consensus 614 ~~aL~~L~ 621 (780)
T 2z6g_A 614 AGVLCELA 621 (780)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999885
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=99.07 E-value=4.4e-07 Score=123.15 Aligned_cols=373 Identities=11% Similarity=0.151 Sum_probs=217.0
Q ss_pred ccCchHHHHHHHHHHhccCCCC-----C---------CChh---HHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHh
Q 000194 677 IRPYIAPIHKALVARLLEGTGI-----N---------ANNG---IISGVLVTVGDLARVGGFGMRQYISELMPLIVEALL 739 (1880)
Q Consensus 677 ~~py~~~il~~ll~~l~~~~~~-----~---------~~~~---v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~ 739 (1880)
+.|++..+..+++.++..+.+. + .+.+ +....-.++..++..++... +..+++.+.+.+.
T Consensus 411 y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~---~~i~~~~l~~~~~ 487 (1073)
T 3gjx_A 411 YLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDT---EIIMTKKLQNQVN 487 (1073)
T ss_dssp THHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHH---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHH---HHHHHHHHHHHhc
Confidence 4566777777777777644210 0 1111 11122345555554433222 2233444444333
Q ss_pred c-CCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCC--CHH--HHHHHHHHHHHHcccCccchhhccc
Q 000194 740 D-GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGEL--VWS--TRREVLKVLGIMGALDPHAHKRNQQ 814 (1880)
Q Consensus 740 d-~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~--~~~--vr~~~l~~lg~lgaldp~~~~~~~~ 814 (1880)
. .-++..++++++++|.++....... -....|++++.|+++..... +.+ ++..++.++|... .+..
T Consensus 488 ~~~~sW~~lea~~~aigaIag~~~~~~-E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~---~wl~----- 558 (1073)
T 3gjx_A 488 GTEWSWKNLNTLCWAIGSISGAMHEED-EKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYP---RFLR----- 558 (1073)
T ss_dssp SCCCCHHHHHHHHHHHHHTTTSSCHHH-HHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCH---HHHH-----
T ss_pred CCCCCHHHHhHHHHHHHHHHCcCCccc-ccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhH---HHHH-----
Confidence 2 2357899999999999874332110 01235889999988774332 222 3333334544421 1100
Q ss_pred cCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCC-
Q 000194 815 LSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGC- 893 (1880)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~- 893 (1880)
...+ |...+++.|+..+.|+. ..+..+++.|+..|...++..+
T Consensus 559 ----------------------------------~h~~-~L~~vl~~L~~~m~~~~-~~vq~aA~~af~~i~~~C~~~lv 602 (1073)
T 3gjx_A 559 ----------------------------------AHWK-FLKTVVNKLFEFMHETH-DGVQDMACDTFIKIAQKCRRHFV 602 (1073)
T ss_dssp ----------------------------------HCHH-HHHHHHHHHHHHTTCCS-TTHHHHHHHHHHHHHHHTGGGGT
T ss_pred ----------------------------------hCHH-HHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 0111 44678888989887664 3567789999999999987654
Q ss_pred -------CCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHh--HHHhHHHHHHHHHHhhcCCCC-----Cccc-
Q 000194 894 -------VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQH--IRKYLQELFSLISELWSSFSL-----PATN- 958 (1880)
Q Consensus 894 -------~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~--i~~y~~~i~~~i~~~~~~~~~-----~~~~- 958 (1880)
.||+++|+..+-.....-++.....++.++|.++...+.. ...++..+|+...+.|+.... ++-.
T Consensus 603 ~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~ 682 (1073)
T 3gjx_A 603 QVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILK 682 (1073)
T ss_dssp SCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGG
T ss_pred hccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhcc
Confidence 4678888887777766666667778889999999877643 457788888888777764210 0000
Q ss_pred cc---ccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHH
Q 000194 959 RT---YRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIR 1035 (1880)
Q Consensus 959 ~~---~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~ 1035 (1880)
++ .....++.+...++.++|..|.+++..++|-+++.-+. ....+-+++..-|.....+ ++.+
T Consensus 683 d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~--------~s~~i~~~v~~~g~~~~~~------~~~~ 748 (1073)
T 3gjx_A 683 DPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKC--------LSENISAAIQANGEMVTKQ------PLIR 748 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCGGGGSS------HHHH
T ss_pred ChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhCCchhhcc------HHHH
Confidence 00 11235677777889999999999999999988866432 1111222333334322211 1111
Q ss_pred hhcCCCcHHHHHHHHHHHHhhccc-ccccchhHhHHHHHHHhh----CCCCHHHH-HHHHHHHHHHHHHhccccccchhH
Q 000194 1036 LFKVDAPVDIRRAAIETLTRLIPR-VQVTGHISSLVHHLKLVL----DGKNDELR-KDAVDALCCLAHALGEDFTIFIPS 1109 (1880)
Q Consensus 1036 ~l~~~~~~~vr~~ai~~l~~l~~~-~~~~~~~~~ii~~l~~~l----~~~~~~l~-~~al~~L~~l~~~~g~~f~~fip~ 1109 (1880)
.+ ..+|+..++.+...+.. -+.......++++|+..+ ....++-| ...+.++.+++.++|..+.+.+|.
T Consensus 749 ~~-----r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~ 823 (1073)
T 3gjx_A 749 SM-----RTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQ 823 (1073)
T ss_dssp HH-----HHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHH
T ss_pred HH-----HHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHH
Confidence 11 23566666666654433 233333444444444332 22334444 557899999999999999999999
Q ss_pred HHHHHHh
Q 000194 1110 IHKLLLK 1116 (1880)
Q Consensus 1110 i~~~l~~ 1116 (1880)
|...+..
T Consensus 824 il~~vf~ 830 (1073)
T 3gjx_A 824 IFDAVFE 830 (1073)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.03 E-value=4.5e-08 Score=127.25 Aligned_cols=483 Identities=14% Similarity=0.080 Sum_probs=269.7
Q ss_pred HhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHH--HHHHHHHHHHHhcCCChhHHHHHHHh
Q 000194 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI--EELVEKLLIAAVADADVTVRHSIFSS 584 (1880)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1880)
+..++.++++.+|..|+.+++.+..... ....++ ...++.|+.....++++++|..+..+
T Consensus 22 Lv~lL~~~~~~v~~~A~~~L~~l~~~~~------------------~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~ 83 (529)
T 1jdh_A 22 LTKLLNDEDQVVVNKAAVMVHQLSKKEA------------------SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGT 83 (529)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHTSHH------------------HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHcCCc------------------cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHH
Confidence 3456778899999999998888763211 011112 24566666655556789999888777
Q ss_pred ccC-CCC--cchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHH
Q 000194 585 LYG-NRG--FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREE 661 (1880)
Q Consensus 585 l~~-~~~--fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~ 661 (1880)
|.. ... .-..+.....++.|...+++++..+|..|+.+|+.++...+.........-.++.+..+-.+ ++.+.+..
T Consensus 84 L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~ 162 (529)
T 1jdh_A 84 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAI 162 (529)
T ss_dssp HHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHHHH
T ss_pred HHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc-CCHHHHHH
Confidence 742 011 00112233578889999999999999999999999988754321111111122233333344 56788888
Q ss_pred HHHHHHHHHHhCcccccCchH-HHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH--HhHHHHHHHHH
Q 000194 662 SAKLLGCLIRNCERLIRPYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEAL 738 (1880)
Q Consensus 662 a~~~L~~l~~~~~~~~~py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~l~p~l~~~l 738 (1880)
++.+|..++...++.-..... ..++.++..+++. ........+..++..++. .......+ ...+|.+++.+
T Consensus 163 ~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~----~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~~~~L~~ll 236 (529)
T 1jdh_A 163 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTY----TYEKLLWTTSRVLKVLSV--CSSNKPAIVEAGGMQALGLHL 236 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTT--STTHHHHHHHTTHHHHHHTTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhC----ChHHHHHHHHHHHHHHhc--CcccHHHHHHCCCHHHHHHHH
Confidence 888998887543221111111 2455666667664 244555666667766653 22223322 35788888888
Q ss_pred hcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCC
Q 000194 739 LDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGS 818 (1880)
Q Consensus 739 ~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~ 818 (1880)
.+. +...+..|+++|+.++..... ......+++.|++++++ .++.+|..++.+++.++.-++-...
T Consensus 237 ~~~-~~~~~~~a~~~L~~l~~~~~~----~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~-------- 302 (529)
T 1jdh_A 237 TDP-SQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNYKNKM-------- 302 (529)
T ss_dssp TSS-CHHHHHHHHHHHHHHHTTCTT----CSCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTTCHHHHH--------
T ss_pred hCC-ChHHHHHHHHHHHHHhcCChh----hHHHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHH--------
Confidence 876 577889999999999876532 22345789999999965 4789999999999888542211000
Q ss_pred cccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCCh-hhhHHHHHHHHHHHHHHhCCC--CC-
Q 000194 819 HGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSL-ASYHQKVVGSLMFIFKSMGLG--CV- 894 (1880)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~-~~~~~~~~~al~~i~~~~~~~--~~- 894 (1880)
.....-+++.|++.|.+++. ......++.++..+....+.. ..
T Consensus 303 ---------------------------------~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 349 (529)
T 1jdh_A 303 ---------------------------------MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 349 (529)
T ss_dssp ---------------------------------HHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred ---------------------------------HHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 00011245677777764321 234445666666553211110 00
Q ss_pred C-CcchhhHHHHHHHhcCCc-chhHHHHHHHHHHHHHHH--HhHH--HhHHHHHHHHHHhhcCCCCCcccccccchhHHH
Q 000194 895 P-YLPKVLPDLFHTVRTCDD-YLKDYITWKLGTLVSIVR--QHIR--KYLQELFSLISELWSSFSLPATNRTYRGLPVLH 968 (1880)
Q Consensus 895 ~-~l~~iip~ll~~l~~~~~-~~~~~~~~~l~~lv~~~~--~~i~--~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~ 968 (1880)
. .-...+|.++..++...+ .++..+++.++.+...-. +.+. ..++.++..+...... ++. .+..
T Consensus 350 ~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~---------v~~-~a~~ 419 (529)
T 1jdh_A 350 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD---------TQR-RTSM 419 (529)
T ss_dssp HHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHH---------HC------
T ss_pred HHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHH---------HHH-HHhc
Confidence 0 012457788888877653 677777776666653110 0111 1223333333211100 000 0111
Q ss_pred HHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhh--hh--hhhHHHHHHhhcCCCcHH
Q 000194 969 LVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDE--HM--HLLLPALIRLFKVDAPVD 1044 (1880)
Q Consensus 969 ~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~--~~--~~ilp~l~~~l~~~~~~~ 1044 (1880)
++...+ +.+. .........++.++..+....+. .+ .-.+|.++.++..+ ..+
T Consensus 420 ~l~n~~---------------------~~~~--~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~-~~~ 475 (529)
T 1jdh_A 420 GGTQQQ---------------------FVEG--VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP-IEN 475 (529)
T ss_dssp ---------------------------CBTT--BCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCS-CHH
T ss_pred ccCchh---------------------hhcc--ccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCC-chH
Confidence 111000 0000 00111222333444333322110 00 23578899888764 578
Q ss_pred HHHHHHHHHHhhcccccccchh--HhHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 000194 1045 IRRAAIETLTRLIPRVQVTGHI--SSLVHHLKLVLDGKNDELRKDAVDALCCL 1095 (1880)
Q Consensus 1045 vr~~ai~~l~~l~~~~~~~~~~--~~ii~~l~~~l~~~~~~l~~~al~~L~~l 1095 (1880)
+|..+..+++.++........+ ...++.|.+.+.+++++++..|..+|..|
T Consensus 476 v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 476 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 9999999999987532111111 23467788899989999999999988765
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.5e-08 Score=131.09 Aligned_cols=432 Identities=15% Similarity=0.092 Sum_probs=268.3
Q ss_pred hHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH--HHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccc
Q 000194 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLI 677 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~ 677 (1880)
.++.|...+++++..||..|..+|+.++...+.. ...+ ...+..++..+..+ .+...+..|+..|..++.......
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~-~~i~~~~~~i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~~~~~~ 92 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLL 92 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHH-HHHTTCHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhH-HHHHhccChHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHH
Confidence 5788888889999999999999999999877521 1111 13344455555554 578889999999988765421110
Q ss_pred cCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH-HhHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 000194 678 RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVEALLDGAAVTKREVAVSTLGQ 756 (1880)
Q Consensus 678 ~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~ 756 (1880)
..+-...++.|+..+.++ ++.++..++.+|..++........... ...+|.+++.|.+. +...+..++.+|..
T Consensus 93 ~i~~~g~i~~Lv~lL~~~-----~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLGSP-----VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQI 166 (644)
T ss_dssp HHHTTTHHHHHHHHTTCS-----SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhCC-----CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC-CHHHHHHHHHHHHH
Confidence 011124677788888764 688999999999999876543333333 57899999999876 45677788889998
Q ss_pred HHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCC
Q 000194 757 VVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPM 836 (1880)
Q Consensus 757 l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (1880)
++......-... .-...++.|+.++++.....++..+++++..++.-......
T Consensus 167 La~~~~~~~~~i-~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~-------------------------- 219 (644)
T 2z6h_A 167 LAYGNQESKLII-LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA-------------------------- 219 (644)
T ss_dssp HHTTCHHHHHHH-HHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHH--------------------------
T ss_pred HHhcCcHHHHHH-HHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHH--------------------------
Confidence 875322110000 01245778888887776778888888888877631110000
Q ss_pred cccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcchh
Q 000194 837 DEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLK 916 (1880)
Q Consensus 837 ~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~~ 916 (1880)
....-+++.|++.+++++. .....++.++..+...... ......++|.++..++..++.++
T Consensus 220 ----------------l~~~g~l~~L~~ll~~~~~-~~~~~a~~~L~nL~~~~~~--~~~~~~~i~~Lv~lL~~~d~~v~ 280 (644)
T 2z6h_A 220 ----------------IVEAGGMQALGLHLTDPSQ-RLVQNCLWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVV 280 (644)
T ss_dssp ----------------HHHTTHHHHHHTTTTCSCH-HHHHHHHHHHHHHGGGCTT--CCSCHHHHHHHHHHTTCSCHHHH
T ss_pred ----------------HHHCCCHHHHHHHHhcCCH-HHHHHHHHHHHHHhhcchh--hhhhhhHHHHHHHHHcCCCHHHH
Confidence 0011256778888877653 3445666777776554322 24567899999999998888889
Q ss_pred HHHHHHHHHHHHHH---HHhHH--HhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhh--hhhc--cchh
Q 000194 917 DYITWKLGTLVSIV---RQHIR--KYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALND--EFRT--HLPV 987 (1880)
Q Consensus 917 ~~~~~~l~~lv~~~---~~~i~--~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~--~f~~--yl~~ 987 (1880)
+.++..|+.+...- ++.+. .-++.++.++... .+. +..+..++.++..++...++ .... .-..
T Consensus 281 ~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~---~~~-----~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~ 352 (644)
T 2z6h_A 281 TCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA---GDR-----EDITEPAICALRHLTSRHQEAEMAQNAVRLHY 352 (644)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH---TTC-----HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHcc---CCc-----HHHHHHHHHHHHHHhcCCchHHHHHHHHHHcc
Confidence 98888888776521 22222 2345555555432 100 01122456666666432111 0010 1134
Q ss_pred hHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhh--h--hhhHHHHHHhhcCC---------------------Cc
Q 000194 988 ILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEH--M--HLLLPALIRLFKVD---------------------AP 1042 (1880)
Q Consensus 988 l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~--~--~~ilp~l~~~l~~~---------------------~~ 1042 (1880)
.+|.+++.|.+.+ +..+...+..++..+...-... + .-++|.++.++... .+
T Consensus 353 ~l~~L~~lL~~~~---~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~ 429 (644)
T 2z6h_A 353 GLPVVVKLLHPPS---HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 429 (644)
T ss_dssp HHHHHHHTTSTTC---CHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCH
T ss_pred ChHHHHHHhCccC---chHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccH
Confidence 6888999997532 2233444555555544322111 1 23577777776431 35
Q ss_pred HHHHHHHHHHHHhhcccccccchh--HhHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 000194 1043 VDIRRAAIETLTRLIPRVQVTGHI--SSLVHHLKLVLDGKNDELRKDAVDALCCLA 1096 (1880)
Q Consensus 1043 ~~vr~~ai~~l~~l~~~~~~~~~~--~~ii~~l~~~l~~~~~~l~~~al~~L~~l~ 1096 (1880)
.+++..++.+|..++........+ ...+++|+..+.+++++++..+..+|+.++
T Consensus 430 ~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~ 485 (644)
T 2z6h_A 430 EEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 485 (644)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 678889999999888753222222 246788889999888999999999998875
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=98.99 E-value=9.5e-05 Score=100.52 Aligned_cols=383 Identities=14% Similarity=0.158 Sum_probs=207.7
Q ss_pred CCHhHHHHHHHHHHhhhcCCccc-ccHHHHHHHHHHHHHHhcCC-CChHh--HHHHHHHHHHHHHhCcccccCchHHHHH
Q 000194 611 EDFDVREYAISVAGRLSEKNPAY-VLPALRRHLIQLLTYLEQSS-ADNKC--REESAKLLGCLIRNCERLIRPYIAPIHK 686 (1880)
Q Consensus 611 ~~~~VR~~a~~~l~~l~~~~p~~-v~p~l~~~l~~~l~~l~~~~-~~~~~--r~~a~~~L~~l~~~~~~~~~py~~~il~ 686 (1880)
.+...+++++.++|.++...... -.+.+.+++..++.-.++.. .+.+. +...+.++|...+-... -..|+++++.
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~-h~~~L~~vl~ 569 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRA-HWKFLKTVVN 569 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHH-CHHHHHHHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHh-CHHHHHHHHH
Confidence 46889999999999997644321 11233333322222222210 11221 22233455544332211 1357888888
Q ss_pred HHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCch--------hhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 000194 687 ALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGM--------RQYISELMPLIVEALLDGAAVTKREVAVSTLGQVV 758 (1880)
Q Consensus 687 ~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~--------~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~ 758 (1880)
-++..+.+. ++.|...++.|+..++..++..+ .||+.+++..+-....+- +......-..++|.++
T Consensus 570 ~L~~~m~~~-----~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l-~~~~~~~lyeav~~vi 643 (1073)
T 3gjx_A 570 KLFEFMHET-----HDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDL-QPQQVHTFYEAVGYMI 643 (1073)
T ss_dssp HHHHHTTCC-----STTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence 888888764 78899999999999998887655 568898888888776654 2333345567888888
Q ss_pred hhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcc
Q 000194 759 QSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDE 838 (1880)
Q Consensus 759 ~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (1880)
...+... ..+.+++.|+...... |. . .+..-+ + ..+
T Consensus 644 ~~~p~~~----~~~~~i~~Lm~~~~~~--w~--~----l~~~~~----------~---------------------~~~- 679 (1073)
T 3gjx_A 644 GAQTDQT----VQEHLIEKYMLLPNQV--WD--S----IIQQAT----------K---------------------NVD- 679 (1073)
T ss_dssp TTCCCHH----HHHHHHHHHTHHHHHH--HH--H----HHHHHH----------H---------------------CGG-
T ss_pred HhCCCcc----hHHHHHHHHHHHHHHH--HH--H----HHHHhh----------c---------------------Cch-
Confidence 7765421 1355666666543211 10 0 000000 0 000
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcchhHH
Q 000194 839 FPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDY 918 (1880)
Q Consensus 839 ~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~~~~ 918 (1880)
++ .+ ..++..|..+| ++...++.++|..|.|++..+.|.+++.-+..+.
T Consensus 680 ----~~------~d---~~~i~~l~~il-------------~~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~~s~----- 728 (1073)
T 3gjx_A 680 ----IL------KD---PETVKQLGSIL-------------KTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSE----- 728 (1073)
T ss_dssp ----GG------GC---HHHHHHHHHHH-------------HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH-----
T ss_pred ----hc------cC---hHHHHHHHHHH-------------hhhHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH-----
Confidence 00 00 11233444433 3445667889998888888888888766543211
Q ss_pred HHHHHHHHHHHHH---------HhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhH
Q 000194 919 ITWKLGTLVSIVR---------QHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVIL 989 (1880)
Q Consensus 919 ~~~~l~~lv~~~~---------~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~ 989 (1880)
.++..+..-| ..+|-.=.+|+.++..+...... ...--..++|+++
T Consensus 729 ---~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~----------------------~~~v~~~~i~pl~ 783 (1073)
T 3gjx_A 729 ---NISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSND----------------------PQMVAENFVPPLL 783 (1073)
T ss_dssp ---HHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSC----------------------HHHHHHHTSHHHH
T ss_pred ---HHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCC----------------------HHHHHHHhHHHHH
Confidence 1111111101 11222223344444433332210 0011234455555
Q ss_pred HHHHHhcccccccCch-hhHHHHHHHHH-HHhcchhhhhhhhHHHH----HHhhcCC--CcHHHHHHHHHHHHhhccc--
Q 000194 990 PCCIQVLSDAERCNDY-TYVLDILHTLE-VFGGTLDEHMHLLLPAL----IRLFKVD--APVDIRRAAIETLTRLIPR-- 1059 (1880)
Q Consensus 990 p~ll~~l~~~~~~~~~-~~~~~il~~l~-~~g~~~~~~~~~ilp~l----~~~l~~~--~~~~vr~~ai~~l~~l~~~-- 1059 (1880)
..++.--.+.. ...| .-++.++.++. .+|..+.+.+..|+..+ +.++.++ ..++.|..=.+.+..+...
T Consensus 784 ~~vl~dY~~~~-p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f 862 (1073)
T 3gjx_A 784 DAVLIDYQRNV-PAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCF 862 (1073)
T ss_dssp HHTHHHHHHSC-GGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHhcCC-cccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHh
Confidence 55554332210 0011 12344444443 36766666666655544 3456544 5678888888888777553
Q ss_pred ---ccccc-hhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000194 1060 ---VQVTG-HISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGE 1101 (1880)
Q Consensus 1060 ---~~~~~-~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~ 1101 (1880)
.++.+ ....++..++-.++..++++-+.++.++..++.++..
T Consensus 863 ~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~ 908 (1073)
T 3gjx_A 863 PAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ 908 (1073)
T ss_dssp GGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhc
Confidence 12222 4566888888888878899999999999999988764
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4.3e-07 Score=118.52 Aligned_cols=507 Identities=13% Similarity=0.098 Sum_probs=282.6
Q ss_pred hhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhh
Q 000194 168 YRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDG 247 (1880)
Q Consensus 168 ~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~ 247 (1880)
.++.+-..++..+..|-+. ...+..+++.+.+++..+|+.+.-++..++. ..++....+...+...
T Consensus 54 ~k~~~l~Kli~l~~~G~d~------s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~--------~~~e~~~L~iN~l~kD 119 (621)
T 2vgl_A 54 SKKKYVCKLLFIFLLGHDI------DFGHMEAVNLLSSNRYTEKQIGYLFISVLVN--------SNSELIRLINNAIKND 119 (621)
T ss_dssp HHHHHHHHHHHHHHHSCCC------CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCC--------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCC------chhHHHHHHHhcCCCHHHHHHHHHHHHHHcc--------CCcHHHHHHHHHHHHh
Confidence 3445555555444444322 2345666788899999999999988776542 1234455666777778
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh--hcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHH
Q 000194 248 LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL--EHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICM 325 (1880)
Q Consensus 248 l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~--~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~ 325 (1880)
+.+++ .-++-.|+.+++.+. .+ ...+.+...+...+ .++++.||+.|+.++..+....|+.. + + +..+
T Consensus 120 l~~~n-~~ir~lALr~L~~i~--~~----e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~-~-~-~~~~ 189 (621)
T 2vgl_A 120 LASRN-PTFMGLALHCIANVG--SR----EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV-P-M-GDWT 189 (621)
T ss_dssp HHSCC-HHHHHHHHHHHHHHC--CH----HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC-C-C-CSCH
T ss_pred cCCCC-HHHHHHHHHHhhccC--CH----HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc-C-c-hhHH
Confidence 88775 455666666666552 22 23445667778888 89999999999999999998777543 2 1 2456
Q ss_pred HHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCC---C-------CCc---hHHHHHHHHH
Q 000194 326 NHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRG---K-------PSL---EALACVGNIA 390 (1880)
Q Consensus 326 ~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~---~-------~~~---~a~~~l~~la 390 (1880)
+.+...|.+.+ .+..|+.+++.++..-++.+.++++.++..+...+....- + ... .++..++.
T Consensus 190 ~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~-- 267 (621)
T 2vgl_A 190 SRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC-- 267 (621)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGG--
T ss_pred HHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHH--
Confidence 66677775433 3678888899988877776778888888877766533211 0 001 12222222
Q ss_pred HHhCC----CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 000194 391 RAMGP----VMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPS--LLPTIQDRLLDCISFVLSKSHYSQARPAATPIRG 464 (1880)
Q Consensus 391 ~~~g~----~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~--l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~ 464 (1880)
+++ .....+.++++.+++.. ...|. .......
T Consensus 268 --~~~~~d~~~~~~l~~~L~~il~~~-------------~~~~ks~~l~~~n~--------------------------- 305 (621)
T 2vgl_A 268 --YPPPEDPAVRGRLTECLETILNKA-------------QEPPKSKKVQHSNA--------------------------- 305 (621)
T ss_dssp --SSSCSSHHHHHHHHHHHHHHHHHH-------------HSCCSCSSHHHHHH---------------------------
T ss_pred --hCCCCCHHHHHHHHHHHHHHHHhh-------------ccCcccccccccch---------------------------
Confidence 222 11111222222222100 00000 0000000
Q ss_pred CccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCC
Q 000194 465 NVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGA 544 (1880)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~ 544 (1880)
.....-.|.+++..+.- ...+....-..+..++.+.++++|..|..++..+....+.
T Consensus 306 -------------~~aVl~ea~~~i~~l~~-~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--------- 362 (621)
T 2vgl_A 306 -------------KNAVLFEAISLIIHHDS-EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--------- 362 (621)
T ss_dssp -------------HHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT---------
T ss_pred -------------HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc---------
Confidence 00001112222222110 0011111112334567777899999998888887643210
Q ss_pred ccccccccchhHHHHHHHHHHHHHHhc-CCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHH
Q 000194 545 SRSNRTGGKRRRLIEELVEKLLIAAVA-DADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVA 623 (1880)
Q Consensus 545 ~~~~~~~~~~~~~~~~vl~~Ll~~~~~-d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l 623 (1880)
...+......++. ++. |+|+.||..+++.+.. -.++ -.-..++..|...+.+.+.+.|..++..+
T Consensus 363 ----------~~~~~~~~~~i~~-~L~~d~d~~Ir~~aL~lL~~--l~~~-~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I 428 (621)
T 2vgl_A 363 ----------HEAVKTHIETVIN-ALKTERDVSVRQRAVDLLYA--MCDR-SNAQQIVAEMLSYLETADYSIREEIVLKV 428 (621)
T ss_dssp ----------HHHHHTTHHHHHH-HHTTCCCHHHHHHHHHHHHH--HCCH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHH-HhccCCCHhHHHHHHHHHHH--HcCh-hhHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 1223333333333 345 9999999998887731 0000 00124566666777788899999999999
Q ss_pred HhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChh
Q 000194 624 GRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNG 703 (1880)
Q Consensus 624 ~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~ 703 (1880)
+.++...|... ...-.++.+++..-. + ....++...+..++...++ ++.| .+..++..+.++. ....
T Consensus 429 ~~la~k~~~~~-~~~v~~Ll~ll~~~~----~-~v~~ev~~~l~~ii~~~~~-~~~~---~~~~l~~~l~~~~---~~~~ 495 (621)
T 2vgl_A 429 AILAEKYAVDY-TWYVDTILNLIRIAG----D-YVSEEVWYRVIQIVINRDD-VQGY---AAKTVFEALQAPA---CHEN 495 (621)
T ss_dssp HHHHHHHCSST-HHHHHHHHHHHHHHG----G-GSCSHHHHHHHHHHGGGCS-CHHH---HHHHHHHHHTSSS---CCHH
T ss_pred HHHHHhcCCcH-HHHHHHHHHHHHhhc----c-cchHHHHHHHHHHHhCChh-HHHH---HHHHHHHHHcCcc---chHH
Confidence 99987765433 223334555554321 1 1333455666667665442 3333 4566677777642 3445
Q ss_pred HHHHHHHHHHHHHHhcCCc--hhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHH
Q 000194 704 IISGVLVTVGDLARVGGFG--MRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKM 781 (1880)
Q Consensus 704 v~~~~~~~l~~La~~~g~~--~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~ 781 (1880)
+...++..+|+-+...... ..| .+++..+.+.+.+. +..+|..++.++.++....+. ..+.+..+++.
T Consensus 496 li~~~~wilGEy~~~~~~~~~~~p--~~~l~~l~~~~~~~-~~~v~~~~Lta~~Kl~~~~p~-------~~~~i~~~l~~ 565 (621)
T 2vgl_A 496 LVKVGGYILGEFGNLIAGDPRSSP--LIQFNLLHSKFHLC-SVPTRALLLSTYIKFVNLFPE-------VKATIQDVLRS 565 (621)
T ss_dssp HHHHHHHHHHHHTHHHHSSTTSCH--HHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHCGG-------GHHHHHHHHSS
T ss_pred HHHHHHHHhcchHHHhcccCCCCH--HHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHChH-------HHHHHHHHHHH
Confidence 6666668888876543221 111 24455666666544 578999999999988654321 11233333333
Q ss_pred hcC--CCCHHHHHHHHHHHHHHc
Q 000194 782 LNG--ELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 782 L~~--~~~~~vr~~~l~~lg~lg 802 (1880)
... +.+.++|..|......+.
T Consensus 566 ~~~~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 566 DSQLKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHHc
Confidence 333 568999999988877664
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-07 Score=122.31 Aligned_cols=308 Identities=8% Similarity=-0.024 Sum_probs=187.3
Q ss_pred HHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHH---HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCch
Q 000194 71 YDRISGLLESNDAAENLGALRAIDELIDVALGENASKV---SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTA 147 (1880)
Q Consensus 71 ~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~---~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~ 147 (1880)
...+.+++++++...|..|+.++..|.... .....+ ....+.|..++...+|.++...|+++|..|+.... ...
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~--~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~-~~~ 95 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-GLL 95 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSH--HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH-HHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCC--ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch-hHH
Confidence 444556777888999999999999887542 111111 12344555555434589999999999999876421 111
Q ss_pred hHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhc-hHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 000194 148 DEVE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVH-VAEFVDAIWVALRDPTLAVRERAVEALRACLRVI 225 (1880)
Q Consensus 148 ~~v~-~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~-l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1880)
.+++ ..++.+++.|.+ .++..|..|+.+|..++...+..-... -...++.+...|.++++.+|..++.+|..+...
T Consensus 96 ~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~- 173 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG- 173 (529)
T ss_dssp HHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-
T ss_pred HHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC-
Confidence 1222 245666666654 346678889999999998755431111 146788999999999999999999988865421
Q ss_pred hhhchhhHHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH--HHHHHHHHHHhhcchhHHHHHHH
Q 000194 226 EKRETRWRVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY--REVAEIVLRYLEHRDRLVRLSIT 302 (1880)
Q Consensus 226 ~~r~~~~~~~~~-~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~--~~i~~~ll~~~~~~~~~Vr~~~~ 302 (1880)
....+.... ...++.+..-+.+.++...+.+++.+|..+..+.. ....+ ...++.++..+.+.++.+++.++
T Consensus 174 ---~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~ 248 (529)
T 1jdh_A 174 ---NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS--NKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248 (529)
T ss_dssp ---CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT--HHHHHHHTTHHHHHHTTTTSSCHHHHHHHH
T ss_pred ---CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcc--cHHHHHHCCCHHHHHHHHhCCChHHHHHHH
Confidence 111111111 12334444444444445566666667766654221 12222 13566777777888899999999
Q ss_pred HHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhh-hHHHHHHHHhhcCCC--CC
Q 000194 303 SLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYL-PTITSHLREAIAPRR--GK 377 (1880)
Q Consensus 303 ~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l-~~i~~~l~~~l~~~~--~~ 377 (1880)
.++..++...+..- .....++.|...|...+ .|..|..+|+.++..-.+...... ...++.+.+.+.... ..
T Consensus 249 ~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~ 325 (529)
T 1jdh_A 249 WTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325 (529)
T ss_dssp HHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHH
Confidence 99999987654321 23567888888886543 467899999998764332211111 123444455453221 12
Q ss_pred CCchHHHHHHHHHH
Q 000194 378 PSLEALACVGNIAR 391 (1880)
Q Consensus 378 ~~~~a~~~l~~la~ 391 (1880)
.+..++.+++.++.
T Consensus 326 v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 326 ITEPAICALRHLTS 339 (529)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHc
Confidence 23467777777653
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-08 Score=116.09 Aligned_cols=189 Identities=8% Similarity=-0.001 Sum_probs=150.9
Q ss_pred CCChHHHHHHHHHHHH-HhhhCCCCc---hhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC-ccch-hchHHH
Q 000194 122 KRDREILVLASKVLGH-LARAGGAMT---ADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS-TVFN-VHVAEF 195 (1880)
Q Consensus 122 ~~d~~v~~~aa~~l~~-L~~~~g~~~---~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p-~~l~-~~l~~i 195 (1880)
+.+-.-++.|...++. ++....... .+|- ..+..+..++..+.+...|.+|+.++++|+.+.. ..|. +|...+
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~-~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~l 105 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYS-NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLV 105 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 5688999999999999 875422222 2332 3366666677556777789999999999999988 7888 999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch---
Q 000194 196 VDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG--- 272 (1880)
Q Consensus 196 ~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~--- 272 (1880)
+|.|+..+.|+++.||+++..|+..++..+.. ... ..++..+++.+...++++ .|.++.+++.+++.++...+
T Consensus 106 lp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~--~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~ 181 (249)
T 2qk1_A 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LAS--SGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGY 181 (249)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCT--TCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-ccc--CCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999988775421 100 001456788888888776 48999999999999998665
Q ss_pred hhhHHHH-HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhh
Q 000194 273 EFMMSRY-REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDR 315 (1880)
Q Consensus 273 ~~~~~~~-~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~ 315 (1880)
+.+.+++ +++++.+..++++.++.||.+++.+++.++...++.
T Consensus 182 ~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 182 STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp HHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH
Confidence 4577899 999999999999999999999999999998765543
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.8e-07 Score=110.10 Aligned_cols=189 Identities=12% Similarity=0.106 Sum_probs=142.4
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHH-
Q 000194 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLT- 647 (1880)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~- 647 (1880)
.+.|+++.+|..++.+|+. +..++.++.|...++|+++.||..|+..|+.+..... . .+. +..++.
T Consensus 31 ~L~~~~~~vr~~A~~~L~~-------~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~-~-~~~----l~~~L~~ 97 (280)
T 1oyz_A 31 LLDDHNSLKRISSARVLQL-------RGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-C-EDN----VFNILNN 97 (280)
T ss_dssp HTTCSSHHHHHHHHHHHHH-------HCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-T-HHH----HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHc-------cCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-c-chH----HHHHHHH
Confidence 4689999999999999852 1235678999999999999999999999999874321 1 222 222332
Q ss_pred HHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH
Q 000194 648 YLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI 727 (1880)
Q Consensus 648 ~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~ 727 (1880)
.+..+ +++..|..+++.|+.+....+ ++.+.+++.++..+.++ ++.++..++.+++.+..
T Consensus 98 ~~~~d-~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~-----~~~vR~~a~~aL~~~~~---------- 157 (280)
T 1oyz_A 98 MALND-KSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDK-----STNVRRATAFAISVIND---------- 157 (280)
T ss_dssp HHHHC-SCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCS-----CHHHHHHHHHHHHTC------------
T ss_pred HHhcC-CCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCC-----CHHHHHHHHHHHHhcCC----------
Confidence 22344 678999999999999986543 34567788888888875 78999999988886643
Q ss_pred HhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 728 SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 728 ~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
+..+|.++..+.|. +..+|..|+.+||.+.. ..+..++.|...++++ ++.+|..++.+||.+|
T Consensus 158 ~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~~~L~~~l~d~-~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 KATIPLLINLLKDP-NGDVRNWAAFAININKY----------DNSDIRDCFVEMLQDK-NEEVRIEAIIGLSYRK 220 (280)
T ss_dssp -CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTC----------CCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhcc----------CcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhC
Confidence 23678888888876 57799999999998621 1257888899888754 7899999999999876
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=98.91 E-value=6.8e-08 Score=124.81 Aligned_cols=356 Identities=14% Similarity=0.107 Sum_probs=219.8
Q ss_pred HHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHH-HHHHHHHHhhhc-CCChhhhhhHHHHHhHhhcccc
Q 000194 25 ALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFM-DQLYDRISGLLE-SNDAAENLGALRAIDELIDVAL 101 (1880)
Q Consensus 25 ~~~~l~~~l~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~-~~l~~~i~~l~~-s~~~~~r~~~i~ai~~Li~~~~ 101 (1880)
.+..+++++.|.+.+.+ .|...+++++ .++-.+ .....+ .-+.+.+.++++ +.+...+..|..++..+.....
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklL---s~~~~~-~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~ 152 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLL---SREKQP-PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS 152 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHH---TSSSCC-CHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH---cCCCCc-hHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCH
Confidence 47889999999864443 4777777765 222221 111111 124556667775 4557788888899998875531
Q ss_pred CcchhHHH-HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH-HHHHHHhhhcCCCcc----hhHHHHHH
Q 000194 102 GENASKVS-KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF-QVKMALDWLRGDRVE----YRRFAAVL 175 (1880)
Q Consensus 102 ~~~~~~~~-~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~-~~~~~~~~l~~~~~~----~~R~aA~~ 175 (1880)
......+. -..+.|..++. +.+.++...|+++|+.|+..+......+++. .++.++..|...... .....++.
T Consensus 153 ~~~~~vv~~Gaip~Lv~LL~-s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 231 (529)
T 3tpo_A 153 EQTKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 231 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHH
Confidence 11111111 13467777775 6789999999999999987521111112221 355666676543222 23445667
Q ss_pred HHHHHHhhc-CccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH--HHHHHHHHHhhccCCC
Q 000194 176 ILKEMAENA-STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW--YYRMFEATQDGLGRNA 252 (1880)
Q Consensus 176 ~l~~la~~~-p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~--~~~~l~~~~~~l~~~~ 252 (1880)
++..++.+. |..-...+..++|.++..+.++++.|+..|+.||+.+...-. ...+. -..+++.+..-+.+++
T Consensus 232 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~-----~~~~~v~~~g~i~~Lv~lL~~~~ 306 (529)
T 3tpo_A 232 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN-----ERIEMVVKKGVVPQLVKLLGATE 306 (529)
T ss_dssp HHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH-----HHHHHHHTTTCHHHHHHHHTCSC
T ss_pred HHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh-----hhHHHHHhccchHHHHHHhcCCC
Confidence 777787764 333345677899999999999999999999999987654211 11111 1235566666666654
Q ss_pred ChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHh
Q 000194 253 PVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTV 331 (1880)
Q Consensus 253 ~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~ 331 (1880)
..++..++.+++.++.+..+....-.+ ..++.+..++.+.++.||+.++.+|..++...+.....-.-..+++.|...
T Consensus 307 -~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~l 385 (529)
T 3tpo_A 307 -LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 385 (529)
T ss_dssp -HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHH
Confidence 678889999999887644322111111 244566777889999999999999999998766532211113578888888
Q ss_pred hcCCC--CcchHHHHHHHHHhhchhhhhhhh--hHHHHHHHHhhcCCCCCCCchHHHHHHHHHH
Q 000194 332 LRIPA--ERDSGFIALGEMAGALDGELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIAR 391 (1880)
Q Consensus 332 L~~~~--~r~~a~~alg~la~~v~~~~~p~l--~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~ 391 (1880)
|.+.. .|..|..+|++++.....+...++ ..+++.+.+.|...+.+....++.++..|..
T Consensus 386 L~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 386 LSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 87664 467889999998765433322333 2355666666654433323345556655544
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=98.90 E-value=4.1e-08 Score=126.01 Aligned_cols=355 Identities=14% Similarity=0.101 Sum_probs=219.5
Q ss_pred HHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHhhhcC-CChhhhhhHHHHHhHhhccccC
Q 000194 26 LNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFMD-QLYDRISGLLES-NDAAENLGALRAIDELIDVALG 102 (1880)
Q Consensus 26 ~~~l~~~l~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~-~l~~~i~~l~~s-~~~~~r~~~i~ai~~Li~~~~~ 102 (1880)
+..++++|.|.+.+.+ .|+.++++++ .++-.+- ....++ -+.+.+.+++++ .+...+..|..|+..|.....
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rkll---s~e~~pp-i~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~- 133 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLL---SREKQPP-IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS- 133 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHH---TCSSCCC-HHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCH-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHh---cCCCCch-HHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH-
Confidence 7888999999875444 4888888876 2332211 112211 135667777764 456778889999999875431
Q ss_pred cchhHHH--HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHH-HHHHHHHhhhcCCCcc----hhHHHHHH
Q 000194 103 ENASKVS--KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVE----YRRFAAVL 175 (1880)
Q Consensus 103 ~~~~~~~--~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~----~~R~aA~~ 175 (1880)
+....+. -..+.|..++. +.+.++++.|+++|+.|+..+......+++ ..++.++..+...... .....++.
T Consensus 134 e~~~~vv~~GaIp~Lv~lL~-s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 134 EQTKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHH
Confidence 1111111 13466777775 678999999999999998742111111112 1355566666543222 23345667
Q ss_pred HHHHHHhhc-CccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH--HHHHHHHHHhhccCCC
Q 000194 176 ILKEMAENA-STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW--YYRMFEATQDGLGRNA 252 (1880)
Q Consensus 176 ~l~~la~~~-p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~--~~~~l~~~~~~l~~~~ 252 (1880)
.+..++.+. |..-...+..++|.+...+.++++.|+..|+.||+.+...- ....+. -..+++.+..-+.+++
T Consensus 213 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~-----~~~~~~i~~~g~i~~Lv~lL~~~~ 287 (510)
T 3ul1_B 213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP-----NERIEMVVKKGVVPQLVKLLGATE 287 (510)
T ss_dssp HHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-----HHHHHHHHTTTCHHHHHHHHTCSC
T ss_pred HHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhch-----hhhHHHHHhcccchhhhhhhcCCC
Confidence 777787764 33444567789999999999999999999999998764321 111111 1234566666666654
Q ss_pred ChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHh
Q 000194 253 PVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTV 331 (1880)
Q Consensus 253 ~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~ 331 (1880)
..++..++.+++.+.....+....-.+ ..++.+..++.+.++.||+.++.++..++...+.....-.-..+++.|...
T Consensus 288 -~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~l 366 (510)
T 3ul1_B 288 -LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 366 (510)
T ss_dssp -HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred -hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHH
Confidence 678889999999887644322111111 133445566788899999999999999998766532211113578888888
Q ss_pred hcCCC--CcchHHHHHHHHHhhchhhhhhhh--hHHHHHHHHhhcCCCCCCCchHHHHHHHHHHH
Q 000194 332 LRIPA--ERDSGFIALGEMAGALDGELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1880)
Q Consensus 332 L~~~~--~r~~a~~alg~la~~v~~~~~p~l--~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~ 392 (1880)
+.+.. .|..|..+|++++.....+...++ ..+++.+.+.|...+.+....++.++..|...
T Consensus 367 L~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 367 LSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 87654 467899999998865433322333 23556666666544333334566666666543
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=98.80 E-value=6.4e-07 Score=114.89 Aligned_cols=397 Identities=13% Similarity=0.109 Sum_probs=219.0
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhh
Q 000194 196 VDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEF 274 (1880)
Q Consensus 196 ~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~-~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~ 274 (1880)
++-++.++...++.++..|..+++.++.. ++.+.. ...+ ..++|.+..-|+..+..+.+..|+-+|..|..+..+.
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~--e~~ppi-~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~ 135 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSR--EKQPPI-DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTC--SSCCCH-HHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcC--CCCchH-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 56677889999999999999999887642 122222 2222 3467888888876555677888888999887654433
Q ss_pred hHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCCCCc-------chHHHHH
Q 000194 275 MMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIPAER-------DSGFIAL 345 (1880)
Q Consensus 275 ~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~~r-------~~a~~al 345 (1880)
-..-.+ ..++.++.++.++++.||+.++.+|+.+|...+. ..+... ...++.|+..|..+... ..+..++
T Consensus 136 ~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~-~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA-FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 222222 2567788888999999999999999999976553 111111 24577777887754321 1344445
Q ss_pred HHHHhhchhh-hhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000194 346 GEMAGALDGE-LFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQI 424 (1880)
Q Consensus 346 g~la~~v~~~-~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~i 424 (1880)
+.++...... -......+++.+...+.....+....++.|++.|+..
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~-------------------------------- 262 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG-------------------------------- 262 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--------------------------------
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--------------------------------
Confidence 5444322110 0011233344444433222111111122222111110
Q ss_pred HHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHH
Q 000194 425 TVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFAR 504 (1880)
Q Consensus 425 ~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~ 504 (1880)
.. ....+ +.. .| +.
T Consensus 263 -----------------------------------------------------~~-~~~~~---i~~---~g------~i 276 (510)
T 3ul1_B 263 -----------------------------------------------------PN-ERIEM---VVK---KG------VV 276 (510)
T ss_dssp -----------------------------------------------------CH-HHHHH---HHT---TT------CH
T ss_pred -----------------------------------------------------hh-hhHHH---HHh---cc------cc
Confidence 00 00000 000 01 11
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHh
Q 000194 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSS 584 (1880)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1880)
..+..++.+++..++..|+.+++.+..... ..... + +..
T Consensus 277 ~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~---------------------~~~~~----i----------------~~~ 315 (510)
T 3ul1_B 277 PQLVKLLGATELPIVTPALRAIGNIVTGTD---------------------EQTQK----V----------------IDA 315 (510)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHTTSCH---------------------HHHHH----H----------------HHT
T ss_pred hhhhhhhcCCChhhhhHHHHHHHHhhcCCH---------------------HHHHH----H----------------hhc
Confidence 223456777888899888888777653110 00011 1 110
Q ss_pred ccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHH
Q 000194 585 LYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAK 664 (1880)
Q Consensus 585 l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~ 664 (1880)
..++.|...+.+++..+|..|..+|+.++..++.........-++..+..+..+ ++.+.|.+|++
T Consensus 316 --------------g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~Aa~ 380 (510)
T 3ul1_B 316 --------------GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK-ADFKTQKEAAW 380 (510)
T ss_dssp --------------TGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHH
T ss_pred --------------cchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHH
Confidence 112333445678888999999999999998876543333322223333333344 67899999999
Q ss_pred HHHHHHHhCcccccCch--HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCC--chhhh---HHh--HHHHHH
Q 000194 665 LLGCLIRNCERLIRPYI--APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF--GMRQY---ISE--LMPLIV 735 (1880)
Q Consensus 665 ~L~~l~~~~~~~~~py~--~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~--~~~~~---~~~--l~p~l~ 735 (1880)
+|+.++.........|+ ..+++.|+..+... ++.++..++.+|..+...+.. ...+| +.+ .+.. +
T Consensus 381 aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~-----d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~-i 454 (510)
T 3ul1_B 381 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK-----DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK-I 454 (510)
T ss_dssp HHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS-----CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHH-H
T ss_pred HHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHH-H
Confidence 99999876432211121 13566777777764 788998999998887765431 11122 111 1222 3
Q ss_pred HHHhcCCchhhHHHHHHHHHH
Q 000194 736 EALLDGAAVTKREVAVSTLGQ 756 (1880)
Q Consensus 736 ~~l~d~~~~~~r~~Al~~Lg~ 756 (1880)
+.|+...+.+.++.|...|.+
T Consensus 455 e~Lq~~~n~~i~~~A~~iie~ 475 (510)
T 3ul1_B 455 EALQRHENESVYKASLNLIEK 475 (510)
T ss_dssp HHGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHH
Confidence 344544455566666655554
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.79 E-value=3.3e-07 Score=107.85 Aligned_cols=238 Identities=13% Similarity=0.085 Sum_probs=163.9
Q ss_pred hHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHH
Q 000194 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560 (1880)
Q Consensus 481 ~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1880)
....|+..|+.+.- +-..+.+..++.++++.||..|+.+++.+.... ..+..
T Consensus 39 vr~~A~~~L~~~~~------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~----------------------~~~~~ 90 (280)
T 1oyz_A 39 KRISSARVLQLRGG------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK----------------------KCEDN 90 (280)
T ss_dssp HHHHHHHHHHHHCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT----------------------TTHHH
T ss_pred HHHHHHHHHHccCC------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc----------------------ccchH
Confidence 44568888887631 223344557788899999999998887653110 11333
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhccCCCCcchh--hccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH
Q 000194 561 LVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDF--LAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL 638 (1880)
Q Consensus 561 vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~--L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l 638 (1880)
+++.|...+..|+++.||..++.+|+. +... -..+..++.|...++|+++.||..|+..|+.+.. | ...|.+
T Consensus 91 l~~~L~~~~~~d~~~~vr~~a~~aL~~---l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--~-~~~~~L 164 (280)
T 1oyz_A 91 VFNILNNMALNDKSACVRATAIESTAQ---RCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--K-ATIPLL 164 (280)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHH---HHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------CCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH---HhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--H-HHHHHH
Confidence 444444445689999999999999852 1100 0134678889999999999999999999998765 2 233433
Q ss_pred HHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHh
Q 000194 639 RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARV 718 (1880)
Q Consensus 639 ~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~ 718 (1880)
.+ .+ .+ +++.+|..|++.|+.+... -+.+++.++..+.++ ++.++..++.+++.+..
T Consensus 165 ~~-------~l-~d-~~~~vr~~a~~aL~~~~~~--------~~~~~~~L~~~l~d~-----~~~vR~~A~~aL~~~~~- 221 (280)
T 1oyz_A 165 IN-------LL-KD-PNGDVRNWAAFAININKYD--------NSDIRDCFVEMLQDK-----NEEVRIEAIIGLSYRKD- 221 (280)
T ss_dssp HH-------HH-TC-SSHHHHHHHHHHHHHHTCC--------CHHHHHHHHHHTTCS-----CHHHHHHHHHHHHHTTC-
T ss_pred HH-------HH-cC-CCHHHHHHHHHHHHhhccC--------cHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHhCC-
Confidence 22 22 33 5788999999999887311 245677788888764 78899998888887641
Q ss_pred cCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000194 719 GGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVL 798 (1880)
Q Consensus 719 ~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~l 798 (1880)
+..+|.++..+.|. ++|..|+.+||.+- . +..++.|...+++..+..++..++..+
T Consensus 222 ---------~~~~~~L~~~l~d~---~vr~~a~~aL~~i~----~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 222 ---------KRVLSVLCDELKKN---TVYDDIIEAAGELG----D--------KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp ---------GGGHHHHHHHHTSS---SCCHHHHHHHHHHC----C--------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred ---------HhhHHHHHHHhcCc---cHHHHHHHHHHhcC----c--------hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 35678888888764 38999999999862 1 357788888887666677887777766
Q ss_pred H
Q 000194 799 G 799 (1880)
Q Consensus 799 g 799 (1880)
+
T Consensus 278 ~ 278 (280)
T 1oyz_A 278 K 278 (280)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.71 E-value=4.8e-07 Score=119.79 Aligned_cols=306 Identities=11% Similarity=0.192 Sum_probs=208.1
Q ss_pred CHHHHHHHHHHHcCCC-CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccc
Q 000194 22 SLDALNRILADLCTHG-NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVA 100 (1880)
Q Consensus 22 ~~~~~~~l~~~l~s~~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~ 100 (1880)
+...+..+++.+.... .+.+.|+..+..++.......... .+ +...+.+.+..+... .+|+.++..|....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~ 83 (986)
T 2iw3_A 12 SIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVP--EH----FFGELAKGIKDKKTA--ANAMQAVAHIANQS 83 (986)
T ss_dssp HHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCC--HH----HHHHHHHHHTSHHHH--HHHHHHHHHHTCTT
T ss_pred hHHHHHHHHhhccccchhHHHHHHHHHHHHHhccccccccc--hh----HHHHHHHHHhccCCH--HHHHHHHHHHHHhc
Confidence 3455667788876533 344557888888774321111111 12 333444455443222 89999999998665
Q ss_pred cCcchhHHHHHHHHHHhhccc--CCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHH
Q 000194 101 LGENASKVSKFSNYMRTVFEV--KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILK 178 (1880)
Q Consensus 101 ~~~~~~~~~~~~~~L~~~l~~--~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~ 178 (1880)
+.. +..-.-+.+.|..++.. +.+..|++.|..++..++.. ..++-+...++.++++|.....|..+.+|+.++.
T Consensus 84 ~~~-~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~ 159 (986)
T 2iw3_A 84 NLS-PSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNA---VNPVAIKALLPHLTNAIVETNKWQEKIAILAAFS 159 (986)
T ss_dssp TCC-TTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHH---SCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCC-CCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 322 22222222333333332 44578888888899888886 4455567788889999987778999999999999
Q ss_pred HHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHH
Q 000194 179 EMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIH 258 (1880)
Q Consensus 179 ~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 258 (1880)
.+++.+|..+.-++++++|.+-.++.|.+++|..+|..++..+...+.+++. ..++|.++..+.+|+ + .-
T Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-------~~~~~~~~~~~~~p~--~-~~ 229 (986)
T 2iw3_A 160 AMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-------ERFIPSLIQCIADPT--E-VP 229 (986)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-------GGGHHHHHHHHHCTT--H-HH
T ss_pred HHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-------hhhHHHHHHHhcChh--h-hH
Confidence 9999999999999999999999999999999999999999999998887764 356677777777763 2 33
Q ss_pred HHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh-hhHHHHHHHHHHHHHHHhhcC---
Q 000194 259 GSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR-DRFVTNYLKICMNHILTVLRI--- 334 (1880)
Q Consensus 259 ~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~-~~f~~~yl~~~~~~Ll~~L~~--- 334 (1880)
.++..|+..-. -.+.-.|-+.=+++.+.+.++.++..+++.++.++..+++.-. ..-+..|++.++|.+......
T Consensus 230 ~~~~~l~~~tf-v~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~ 308 (986)
T 2iw3_A 230 ETVHLLGATTF-VAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIAD 308 (986)
T ss_dssp HHHHHHTTCCC-CSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCS
T ss_pred HHHHHhhcCee-EeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCC
Confidence 33333322110 0122335666677788888888888888888888999887432 223556899999999887654
Q ss_pred CCCcchHHHHHHHHHh
Q 000194 335 PAERDSGFIALGEMAG 350 (1880)
Q Consensus 335 ~~~r~~a~~alg~la~ 350 (1880)
|..|..|-.|+..+-.
T Consensus 309 pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 309 PEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3348777777666643
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=98.69 E-value=2.3e-06 Score=110.44 Aligned_cols=316 Identities=12% Similarity=0.073 Sum_probs=199.6
Q ss_pred HHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHH--HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhH
Q 000194 72 DRISGLLESNDAAENLGALRAIDELIDVALGENASKVSK--FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADE 149 (1880)
Q Consensus 72 ~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~--~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~ 149 (1880)
+.+.+.++|++...+..|+.++..|+.......-..+.+ ..+.|..++...+++++...|+++|+.|+.........+
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v 158 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 158 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344566789999999999999999876642111112221 234555555445568999999999999987421112223
Q ss_pred HHH-HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchh-chHHHHHHHHHHhcCCchh-----HHHHHHHHHHHHH
Q 000194 150 VEF-QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNV-HVAEFVDAIWVALRDPTLA-----VRERAVEALRACL 222 (1880)
Q Consensus 150 v~~-~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~-~l~~i~~~i~~~l~D~~~~-----VR~aA~~al~~~~ 222 (1880)
++. .++.++..|. +.+...|..|+.+|+.|+...|..=.. .-...++.++..|.+++.. +...+..++..+.
T Consensus 159 v~~Gaip~Lv~LL~-s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 159 VDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 332 4566666664 445567888999999999765542110 1123567777888766532 3444555555443
Q ss_pred HHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH-HHHHHHHHHHhhcchhHHHHHH
Q 000194 223 RVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY-REVAEIVLRYLEHRDRLVRLSI 301 (1880)
Q Consensus 223 ~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~-~~i~~~ll~~~~~~~~~Vr~~~ 301 (1880)
. .............++|.+...+.+++ .+++..++.+|..+.....+....-. ..+++.++.++.+.+..|+..+
T Consensus 238 ~---~~~~~~~~~~~~~~lp~L~~LL~~~~-~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a 313 (529)
T 3tpo_A 238 R---NKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 313 (529)
T ss_dssp C---CCTTCCCHHHHHHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred h---cccchhhHHHHhhHHHHHHHHhcCCc-HHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHH
Confidence 2 12222222345677888888777764 68888888899888875543222211 2356677888899999999999
Q ss_pred HHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhh-hHHHHHHHHhhcCCCCCC
Q 000194 302 TSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYL-PTITSHLREAIAPRRGKP 378 (1880)
Q Consensus 302 ~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l-~~i~~~l~~~l~~~~~~~ 378 (1880)
+.+++.++.........-.-...++.|...|..++ .|..|+.+|++++........... ..+++.+...+.....+.
T Consensus 314 ~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 393 (529)
T 3tpo_A 314 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 393 (529)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHH
Confidence 99999998765543211111356777788887655 367899999999876554322222 246667777776554444
Q ss_pred CchHHHHHHHHHHH
Q 000194 379 SLEALACVGNIARA 392 (1880)
Q Consensus 379 ~~~a~~~l~~la~~ 392 (1880)
+..+..+++.++..
T Consensus 394 ~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 394 QKAAAWAITNYTSG 407 (529)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC
Confidence 55788888888764
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.3e-07 Score=100.04 Aligned_cols=192 Identities=21% Similarity=0.226 Sum_probs=139.4
Q ss_pred cCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCC
Q 000194 494 FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADA 573 (1880)
Q Consensus 494 ~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~ 573 (1880)
+.++.+.+.....++.++.++++.+|..|+.+++.+-.. ..+. .|+. .+.|+
T Consensus 6 ~~~~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~-----------------------~~~~----~L~~-~l~~~ 57 (201)
T 3ltj_A 6 HHHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-----------------------RAVE----PLIK-ALKDE 57 (201)
T ss_dssp -CCCCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-----------------------GGHH----HHHH-HTTCS
T ss_pred ccccccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh-----------------------hHHH----HHHH-HHcCC
Confidence 334455566677788899999999999999888764310 1122 2332 35799
Q ss_pred ChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCC
Q 000194 574 DVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSS 653 (1880)
Q Consensus 574 ~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~ 653 (1880)
++.+|..++.+|.. +..++.++.|...++|+++.||..|+..|+.+... ...|.+.+ .+ .+
T Consensus 58 ~~~vr~~a~~~L~~-------~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---~~~~~L~~-------~l-~d- 118 (201)
T 3ltj_A 58 DAWVRRAAADALGQ-------IGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDE---RAVEPLIK-------AL-KD- 118 (201)
T ss_dssp SHHHHHHHHHHHHH-------HCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---GGHHHHHH-------HT-TC-
T ss_pred CHHHHHHHHHHHHh-------hCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH---HHHHHHHH-------HH-cC-
Confidence 99999999999852 22346788899999999999999999999997642 12232222 22 34
Q ss_pred CChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHH
Q 000194 654 ADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPL 733 (1880)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~ 733 (1880)
+++.+|..|++.|+.+.. +..++.+...+.++ ++.++..++.+++.+.. +..++.
T Consensus 119 ~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-----~~~vr~~A~~aL~~~~~----------~~~~~~ 173 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDE-----DGWVRQSAADALGEIGG----------ERVRAA 173 (201)
T ss_dssp SSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHCS----------HHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCc----------hhHHHH
Confidence 688999999999998842 23455667777764 78899999999888721 467888
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHH
Q 000194 734 IVEALLDGAAVTKREVAVSTLGQVV 758 (1880)
Q Consensus 734 l~~~l~d~~~~~~r~~Al~~Lg~l~ 758 (1880)
+...+.|. +..+|..|..+|+.+-
T Consensus 174 L~~~l~d~-~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 174 MEKLAETG-TGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHC-CHHHHHHHHHHHHHCC
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 88888876 5789999999999863
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.55 E-value=9.3e-07 Score=117.08 Aligned_cols=278 Identities=10% Similarity=0.099 Sum_probs=197.6
Q ss_pred hHHHHHHHHHHHHHhhh-CCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC--ccchhchHHHHHHHHH
Q 000194 125 REILVLASKVLGHLARA-GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS--TVFNVHVAEFVDAIWV 201 (1880)
Q Consensus 125 ~~v~~~aa~~l~~L~~~-~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p--~~l~~~l~~i~~~i~~ 201 (1880)
..-++.|+..+..+... ++..... ...+..+...+. +++.. .+|+.++..|++..+ .-+.||+-.++|.++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 102 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNIIEHDVP--EHFFGELAKGIK-DKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICT 102 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSCSSSSCC--HHHHHHHHHHHT-SHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccccccccc--hhHHHHHHHHHh-ccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHH
Confidence 34446666666666553 2111111 122333333332 33333 899999999997653 3568999999999999
Q ss_pred HhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH
Q 000194 202 ALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE 281 (1880)
Q Consensus 202 ~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~ 281 (1880)
++.|....||.||..|+.++...+. . ..+..++|.+..+|.+...|..+.||+.+++.|.+..++.+.-++.+
T Consensus 103 ~~~dk~~~v~~aa~~~~~~~~~~~~-~------~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~ 175 (986)
T 2iw3_A 103 NAGNKDKEIQSVASETLISIVNAVN-P------VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE 175 (986)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHSC-G------GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHhCC-H------HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 9999999999999999998877654 1 22477888888888766579999999999999999778889999999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhhhhh
Q 000194 282 VAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLP 361 (1880)
Q Consensus 282 i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la~~v~~~~~p~l~ 361 (1880)
+++.+-...-+..+.|++++..++..++......= +.+.+|.|..++.++++-..+...|+.. ..|..-=.|-+.
T Consensus 176 ~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d----~~~~~~~~~~~~~~p~~~~~~~~~l~~~-tfv~~v~~~~l~ 250 (986)
T 2iw3_A 176 LIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD----IERFIPSLIQCIADPTEVPETVHLLGAT-TFVAEVTPATLS 250 (986)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT----TGGGHHHHHHHHHCTTHHHHHHHHHTTC-CCCSCCCHHHHH
T ss_pred hhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc----hhhhHHHHHHHhcChhhhHHHHHHhhcC-eeEeeecchhHH
Confidence 99999999999999999999999999887544221 2445778888888886544444444441 112221136666
Q ss_pred HHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCC--CchHHHHHHHHHHHhc--C-CCHHHHH
Q 000194 362 TITSHLREAIAPRRGKPSLEALACVGNIARAMGP--VMEPHVRGLLDIMFSA--G-LSTTLVD 419 (1880)
Q Consensus 362 ~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~--~~~~~l~~ll~~l~~~--~-ls~~l~~ 419 (1880)
-+++.+..+|..........+...+..+++-+.. +..||++.++|.+-.. + ..|+.++
T Consensus 251 ~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~ 313 (986)
T 2iw3_A 251 IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEARE 313 (986)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHH
T ss_pred HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHH
Confidence 6778888888653222224677888999988875 6889999999998753 2 4566665
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.52 E-value=2e-06 Score=99.17 Aligned_cols=237 Identities=14% Similarity=0.065 Sum_probs=163.1
Q ss_pred HHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHH--HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhH
Q 000194 72 DRISGLLESNDAAENLGALRAIDELIDVALGENASKVS--KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADE 149 (1880)
Q Consensus 72 ~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~--~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~ 149 (1880)
+.+.+++++++...|..|+.++..+..... +....+. ...+.|..++. +.|.+++..|+++|+.|+.........+
T Consensus 5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 5 EKLVKLLTSTDSETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 345677888888899999999999976542 1111111 24566777775 5689999999999999987521112222
Q ss_pred HH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhc-hHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q 000194 150 VE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVH-VAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK 227 (1880)
Q Consensus 150 v~-~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~-l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~ 227 (1880)
++ ..++.+++.+. +.++..|..|+.+|+.++.+.+..-... -...++.++..++++++.+|..|+.+|+.+...
T Consensus 83 ~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~--- 158 (252)
T 4hxt_A 83 VDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG--- 158 (252)
T ss_dssp HHTTHHHHHHHHTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---
T ss_pred HHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---
Confidence 22 24666666665 3556788999999999997655432211 135788899999999999999999999887532
Q ss_pred hchhhHHH-HHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH-HHHHHHHHHHhhcchhHHHHHHHHHh
Q 000194 228 RETRWRVQ-WYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY-REVAEIVLRYLEHRDRLVRLSITSLL 305 (1880)
Q Consensus 228 r~~~~~~~-~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~-~~i~~~ll~~~~~~~~~Vr~~~~~~i 305 (1880)
....... .-...++.+...+.+++ .+++..++.+|+.+.....+....-. ..+++.++..+++.++.+|+.++.++
T Consensus 159 -~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L 236 (252)
T 4hxt_A 159 -PDEAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRAL 236 (252)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHCcCHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence 1111111 11346777777777664 68899999999998874433222221 23667888888899999999999999
Q ss_pred HhHhhhChhhH
Q 000194 306 PRIAHFLRDRF 316 (1880)
Q Consensus 306 ~~la~~~~~~f 316 (1880)
..++...+..+
T Consensus 237 ~~l~~~~~~~~ 247 (252)
T 4hxt_A 237 ENIKSGGWLEH 247 (252)
T ss_dssp HHHHHTCBCCC
T ss_pred HHHHcCCCccc
Confidence 99998776544
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.2e-06 Score=97.43 Aligned_cols=240 Identities=14% Similarity=0.049 Sum_probs=164.4
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhch-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhh
Q 000194 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRW 232 (1880)
Q Consensus 154 ~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l-~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~ 232 (1880)
++.+++.|+++. ...|..|+.+|+.++...+......+ ..+++.++..|.++++.||..|+.+|+.+... ....
T Consensus 4 i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~ 78 (252)
T 4hxt_A 4 VEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG----PDEA 78 (252)
T ss_dssp HHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS----CHHH
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC----ChHH
Confidence 556667776444 67788899999999987763322222 25788999999999999999999999876532 1112
Q ss_pred HHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH-HHHHHHHHHHhhcchhHHHHHHHHHhHhHhh
Q 000194 233 RVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY-REVAEIVLRYLEHRDRLVRLSITSLLPRIAH 310 (1880)
Q Consensus 233 ~~~~~-~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~-~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~ 310 (1880)
+.... ...++.+...+.++ +.+++..++.+|+.+.....+.-..-. ...++.++..+++.++.+|..++.++..++.
T Consensus 79 ~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 79 IKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 22222 23566677777765 478899999999998854332211111 2367788888899999999999999999997
Q ss_pred hChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhh-hHHHHHHHHhhcCCCCCCCchHHHHHH
Q 000194 311 FLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYL-PTITSHLREAIAPRRGKPSLEALACVG 387 (1880)
Q Consensus 311 ~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l-~~i~~~l~~~l~~~~~~~~~~a~~~l~ 387 (1880)
..+.....-.-...++.|...+.+++ .|..|+.+|+.++..-+....... ..+++.+.+.+.+.+.+.+..++.+++
T Consensus 158 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 237 (252)
T 4hxt_A 158 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE 237 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 66543211111468888888887654 478899999999874443222222 347778888886654445578999999
Q ss_pred HHHHHhCCCchH
Q 000194 388 NIARAMGPVMEP 399 (1880)
Q Consensus 388 ~la~~~g~~~~~ 399 (1880)
.++...+....+
T Consensus 238 ~l~~~~~~~~~~ 249 (252)
T 4hxt_A 238 NIKSGGWLEHHH 249 (252)
T ss_dssp HHHHTCBCCC--
T ss_pred HHHcCCCccccc
Confidence 999877665544
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.1e-06 Score=92.83 Aligned_cols=176 Identities=19% Similarity=0.242 Sum_probs=133.3
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHH
Q 000194 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1880)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1880)
.+.|+++.+|..++.+|.. +..++.++.|...++|+++.||..|+..|+.+... ...|.+.+ .
T Consensus 22 ~L~~~~~~vr~~A~~~L~~-------~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~---~~~~~L~~-------~ 84 (201)
T 3ltj_A 22 NLQDDSYYVRRAAAYALGK-------IGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE---RAVEPLIK-------A 84 (201)
T ss_dssp HTTCSCHHHHHHHHHHHHH-------HCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---GGHHHHHH-------H
T ss_pred HhcCCCHHHHHHHHHHHHh-------cCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH---HHHHHHHH-------H
Confidence 4689999999999999852 12235788899999999999999999999988642 22233322 2
Q ss_pred HhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHH
Q 000194 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS 728 (1880)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~ 728 (1880)
+ .+ +++..|..|++.|+.+.. +..++.++..+.++ ++.|+..++.+++.+.. +
T Consensus 85 l-~d-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-----~~~vr~~a~~aL~~~~~----------~ 137 (201)
T 3ltj_A 85 L-KD-EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE-----DWFVRIAAAFALGEIGD----------E 137 (201)
T ss_dssp T-TC-SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHTC----------G
T ss_pred H-cC-CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCC----------H
Confidence 2 34 678899999999988732 12345566667654 78899999999888742 3
Q ss_pred hHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 729 ELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 729 ~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
..+|.+...+.|. +..+|..|+.+|+.+ | .+..++.|..+++++ ++.+|.++.++|+.+.
T Consensus 138 ~~~~~L~~~l~d~-~~~vr~~A~~aL~~~----~--------~~~~~~~L~~~l~d~-~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 138 RAVEPLIKALKDE-DGWVRQSAADALGEI----G--------GERVRAAMEKLAETG-TGFARKVAVNYLETHK 197 (201)
T ss_dssp GGHHHHHHHTTCS-SHHHHHHHHHHHHHH----C--------SHHHHHHHHHHHHHC-CHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHh----C--------chhHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 5677888888876 678999999999987 2 156788888888654 7899999999998875
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.1e-06 Score=94.60 Aligned_cols=176 Identities=19% Similarity=0.220 Sum_probs=132.1
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHH
Q 000194 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1880)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1880)
.+.|+++.+|..++..|.. +..++.++.|...++|++..||..|+..|+.+.. + ...|.+.+ .
T Consensus 27 ~L~~~~~~vR~~A~~~L~~-------~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~-~~~~~L~~-------~ 89 (211)
T 3ltm_A 27 NLQDDSYYVRRAAAYALGK-------IGDERAVEPLIKALKDEDAWVRRAAADALGQIGD--E-RAVEPLIK-------A 89 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHH-------HCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--G-GGHHHHHH-------H
T ss_pred HHcCCCHHHHHHHHHHHHH-------hCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H-HHHHHHHH-------H
Confidence 3579999999999999852 1224678899999999999999999999999864 2 22333322 2
Q ss_pred HhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHH
Q 000194 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS 728 (1880)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~ 728 (1880)
+ .+ +++..|..|+..|+.+.. +..++.++..+.++ ++.++..++.+++.+.. +
T Consensus 90 l-~~-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-----~~~vr~~a~~aL~~~~~----------~ 142 (211)
T 3ltm_A 90 L-KD-EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE-----DWFVRIAAAFALGEIGD----------E 142 (211)
T ss_dssp T-TC-SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHCC----------G
T ss_pred H-cC-CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcCC----------H
Confidence 2 34 578899999999988742 12345566667664 78899999999887732 3
Q ss_pred hHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 729 ELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 729 ~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
+.+|.+...+.|. +..+|..|+.+|+.+- .|..++.|..+++++ ++.||.++..+|+.++
T Consensus 143 ~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~------------~~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 143 RAVEPLIKALKDE-DGWVRQSAADALGEIG------------GERVRAAMEKLAETG-TGFARKVAVNYLETHK 202 (211)
T ss_dssp GGHHHHHHHTTCS-SHHHHHHHHHHHHHHC------------SHHHHHHHHHHHHHC-CHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHhC------------chhHHHHHHHHHhCC-CHHHHHHHHHHHHhcC
Confidence 5678888888776 5789999999999872 157788888888754 7899999999998876
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.2e-06 Score=98.86 Aligned_cols=230 Identities=11% Similarity=0.068 Sum_probs=156.4
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccch
Q 000194 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFN 189 (1880)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~ 189 (1880)
|..+...+ . ++|.++...|++++.+++.........+++ ..++.+++.|+++. ...|..|+.+|+.++.+.+..-.
T Consensus 14 ~~~~~~~L-~-s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 14 LPQMTQQL-N-SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp HHHHHHHH-H-SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHH-c-CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 33444444 3 568999999999998765531111122232 25677777776544 67889999999999986554322
Q ss_pred hch-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhH-HHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHH
Q 000194 190 VHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWR-VQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGE 266 (1880)
Q Consensus 190 ~~l-~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~-~~~~-~~~l~~~~~~l~~~~~~~~~~~al~~l~~ 266 (1880)
..+ ...++.+...|+++++.||+.|+.+|+.+... . ..+ .... ...++.+...+.++ +.+++..++.+|+.
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~-~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~ 164 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASG----G-NEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSN 164 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS----C-HHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----C-chHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 222 24789999999999999999999999887432 1 112 2222 34677788878776 47889999999999
Q ss_pred HHHcchhhhHHHH-HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCCC--CcchHH
Q 000194 267 LLRNTGEFMMSRY-REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIPA--ERDSGF 342 (1880)
Q Consensus 267 ll~~~~~~~~~~~-~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~--~r~~a~ 342 (1880)
+.....+....-. ..+++.++..+++.++.+|..++.++..++...+.... ... ...++.|...+++.+ .|..|.
T Consensus 165 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~L~~ll~~~~~~v~~~A~ 243 (252)
T 4db8_A 165 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ-AVKEAGALEKLEQLQSHENEKIQKEAQ 243 (252)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTHHHHHHTTTTCSSSHHHHTHH
T ss_pred HHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHH-HHHHCCcHHHHHHHhCCCCHHHHHHHH
Confidence 8875433222111 23567788888899999999999999999976654322 122 347788888887654 367888
Q ss_pred HHHHHHHh
Q 000194 343 IALGEMAG 350 (1880)
Q Consensus 343 ~alg~la~ 350 (1880)
.+|++++.
T Consensus 244 ~~L~~l~~ 251 (252)
T 4db8_A 244 EALEKLQS 251 (252)
T ss_dssp HHHHTTC-
T ss_pred HHHHHHhc
Confidence 89888763
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.8e-06 Score=93.07 Aligned_cols=185 Identities=21% Similarity=0.230 Sum_probs=130.9
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHh
Q 000194 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSS 584 (1880)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1880)
+.+...+.++++.+|..|+..++.+-.. ..+. .|+. .+.|+++.||..++.+
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~~-----------------------~~~~----~L~~-~l~~~~~~vr~~a~~a 73 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIGDE-----------------------RAVE----PLIK-ALKDEDAWVRRAAADA 73 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------------------GGHH----HHHH-HTTCSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCc-----------------------cHHH----HHHH-HHcCCCHHHHHHHHHH
Confidence 3445677889999999999888765311 1122 2222 4579999999999999
Q ss_pred ccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHH
Q 000194 585 LYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAK 664 (1880)
Q Consensus 585 l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~ 664 (1880)
|+. +..++.++.|...++|+++.||..|+..|+.+... ...|.+.+ +..+ +++.+|..|+.
T Consensus 74 L~~-------~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~---~~~~~L~~--------~l~d-~~~~vr~~a~~ 134 (211)
T 3ltm_A 74 LGQ-------IGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDE---RAVEPLIK--------ALKD-EDWFVRIAAAF 134 (211)
T ss_dssp HHH-------HCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---GGHHHHHH--------HTTC-SSHHHHHHHHH
T ss_pred HHh-------hCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH---HHHHHHHH--------HHhC-CCHHHHHHHHH
Confidence 852 12346788899999999999999999999998642 12233222 2234 68899999999
Q ss_pred HHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCch
Q 000194 665 LLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAV 744 (1880)
Q Consensus 665 ~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~ 744 (1880)
.|+.+.. +..++.|.+.+.++ ++.|+..++.+++.+.. +..++.+...+.|. +.
T Consensus 135 aL~~~~~----------~~~~~~L~~~l~d~-----~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~ 188 (211)
T 3ltm_A 135 ALGEIGD----------ERAVEPLIKALKDE-----DGWVRQSAADALGEIGG----------ERVRAAMEKLAETG-TG 188 (211)
T ss_dssp HHHHHCC----------GGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC-CH
T ss_pred HHHHcCC----------HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC-CH
Confidence 9998832 12455667777664 78899999999887732 56788888888876 57
Q ss_pred hhHHHHHHHHHHHHhhcC
Q 000194 745 TKREVAVSTLGQVVQSTG 762 (1880)
Q Consensus 745 ~~r~~Al~~Lg~l~~~~~ 762 (1880)
.+|..|..+|+.+....+
T Consensus 189 ~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 189 FARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 899999999998765543
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.41 E-value=5.2e-07 Score=106.29 Aligned_cols=227 Identities=14% Similarity=0.098 Sum_probs=141.2
Q ss_pred HHHHHHHHHcCCC-CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc
Q 000194 25 ALNRILADLCTHG-NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGE 103 (1880)
Q Consensus 25 ~~~~l~~~l~s~~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~ 103 (1880)
....++.+|-++. +.+.|||.+|+.++........ +. .-.+. |...|+-.++|+|.+-++-++.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAG-----R~---------~~~N~-DLAvRLLCVLALDRFGDYVSDq 239 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGD-----IQ---------IRVDS-KLFSKIYEILVTDKFNDFVDDR 239 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC---------CC---------CCCCT-THHHHHHHHHHHBCCBBCSSSS
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCc-----ee---------ccccH-HHHHHHHHHHHhccccccccCe
Confidence 4566677777775 4555777777777644322111 10 11222 6666666777777665553211
Q ss_pred chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh
Q 000194 104 NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN 183 (1880)
Q Consensus 104 ~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~ 183 (1880)
--..||+.+|++||.+ .+-... -+. +..++..+ ....|..||+|++.|+++
T Consensus 240 -------------------VVAPVRETaAQtLGaL-~hLp~e-~~I----L~qLV~~l-~~~~WEVRHGGLLGLKYL--- 290 (800)
T 3oc3_A 240 -------------------TVAPVRDAAAYLLSRI-YPLIGP-NDI----IEQLVGFL-DSGDWQVQFSGLIALGYL--- 290 (800)
T ss_dssp -------------------CBCHHHHHHHHHHHHH-TTTSCS-CCH----HHHHTTGG-GCSCHHHHHHHHHHHHHT---
T ss_pred -------------------eeeehHHHHHHHHHHH-HhCChh-HHH----HHHHHhhc-CCCCeeehhhhHHHHHHH---
Confidence 0147999999999999 652211 122 33333322 456799999999999999
Q ss_pred cCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCCh-hHHHHHHH
Q 000194 184 ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPV-HSIHGSLL 262 (1880)
Q Consensus 184 ~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~~~al~ 262 (1880)
-+.+. .++.+++.++.+|+|++..||..|+.+|.-+. .+ +.+..++..+.+.|.+-+|- ....+.+.
T Consensus 291 -~DLL~-~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA------~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMd 358 (800)
T 3oc3_A 291 -KEFVE-DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP------IT----DSLDLVLEKCWKNIESEELISVSKTSNLS 358 (800)
T ss_dssp -GGGCC-CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC------CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHH
T ss_pred -HHHHH-HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc------ch----hhHHHHHHHHHHHhhhhcccchhhHHHHH
Confidence 22222 28999999999999999999999999886554 11 12444555555444433221 22334444
Q ss_pred HHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHh
Q 000194 263 AVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIA 309 (1880)
Q Consensus 263 ~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la 309 (1880)
+|..|......... .+.+++.+..++.|.-..||++++.++-++.
T Consensus 359 LLAkL~s~p~~a~~--dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 359 LLTKIYRENPELSI--PPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHCTTCCC--CSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCccccc--ChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 66776664321110 1256777888899999999999999887655
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.1e-06 Score=99.14 Aligned_cols=231 Identities=16% Similarity=0.135 Sum_probs=156.9
Q ss_pred HHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHH--HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhH
Q 000194 72 DRISGLLESNDAAENLGALRAIDELIDVALGENASKV--SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADE 149 (1880)
Q Consensus 72 ~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~--~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~ 149 (1880)
+.+.+++++++...|..|+.++..++... .+....+ ....+.|..++. +.+.+++..|+++|+.|+.........+
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34556788899999999999997765542 1111111 123456777775 5679999999999999987421122223
Q ss_pred HHH-HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccch-hchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q 000194 150 VEF-QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFN-VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK 227 (1880)
Q Consensus 150 v~~-~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~-~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~ 227 (1880)
++. .++.+++.|.+ .++..|..|+.+|+.++.+.+.... -.-...++.+...|.++++.||..|+.+|+.+...
T Consensus 93 ~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--- 168 (252)
T 4db8_A 93 IDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--- 168 (252)
T ss_dssp HHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS---
T ss_pred HHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC---
Confidence 322 56677777765 4567889999999999887654312 22235889999999999999999999999887531
Q ss_pred hchhhHHHH-HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHh
Q 000194 228 RETRWRVQW-YYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLL 305 (1880)
Q Consensus 228 r~~~~~~~~-~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i 305 (1880)
........ -..+++.+...+.++ +.+++..++.+|+.+.....+......+ ..++.++..+.+.++.+|+.++.+|
T Consensus 169 -~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L 246 (252)
T 4db8_A 169 -GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246 (252)
T ss_dssp -CHHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHH
T ss_pred -ChHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHH
Confidence 11111111 134567777777776 4788999999999988644332222222 2667778888899999999999999
Q ss_pred HhHhh
Q 000194 306 PRIAH 310 (1880)
Q Consensus 306 ~~la~ 310 (1880)
..++.
T Consensus 247 ~~l~~ 251 (252)
T 4db8_A 247 EKLQS 251 (252)
T ss_dssp HTTC-
T ss_pred HHHhc
Confidence 88864
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.0057 Score=86.10 Aligned_cols=230 Identities=7% Similarity=0.014 Sum_probs=140.4
Q ss_pred hhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc-CCCcchhHHHHHHHHHHHHhh
Q 000194 105 ASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-GDRVEYRRFAAVLILKEMAEN 183 (1880)
Q Consensus 105 ~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~-~~~~~~~R~aA~~~l~~la~~ 183 (1880)
..+..++...|...+.+..|.++++.|-+.|..+-..+. . ...+...|. ...+...|+.|...|+.....
T Consensus 7 ~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~-----~----~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~ 77 (1204)
T 3a6p_A 7 NALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCP-----I----CVPCGLRLAEKTQVAIVRHFGLQILEHVVKF 77 (1204)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCT-----T----HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCch-----H----HHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 445666777777777655678889999999988866532 1 122222232 344567888888888876643
Q ss_pred -cCccchhchHHHHHHHHHHhc-------CCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChh
Q 000194 184 -ASTVFNVHVAEFVDAIWVALR-------DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVH 255 (1880)
Q Consensus 184 -~p~~l~~~l~~i~~~i~~~l~-------D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~ 255 (1880)
+...=...-..|-..++..+. ++.+.||...+.++..++..- .+ .+| +.+++.+...+.++ ..
T Consensus 78 ~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d---~p---~~W-p~ll~~L~~~~~~~--~~ 148 (1204)
T 3a6p_A 78 RWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKRE---WP---QHW-PDMLIELDTLSKQG--ET 148 (1204)
T ss_dssp SGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHH---ST---TTC-TTHHHHHHHHHHTC--HH
T ss_pred hcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHh---Cc---ccc-hHHHHHHHHHhcCC--HH
Confidence 322212233344444555543 245889998888887765431 11 123 34555555544442 35
Q ss_pred HHHHHHHHHHHHHHcch--------------hhhHHHHHHHHHHHHHHhhc-------------------chhHHHHHHH
Q 000194 256 SIHGSLLAVGELLRNTG--------------EFMMSRYREVAEIVLRYLEH-------------------RDRLVRLSIT 302 (1880)
Q Consensus 256 ~~~~al~~l~~ll~~~~--------------~~~~~~~~~i~~~ll~~~~~-------------------~~~~Vr~~~~ 302 (1880)
.+++++.+|..|.+-.. +.+..++.+++..+...+++ .+..++.+++
T Consensus 149 ~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL 228 (1204)
T 3a6p_A 149 QTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAAL 228 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHH
Confidence 67888888888865210 12334444555555444432 2345777888
Q ss_pred HHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhc
Q 000194 303 SLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGAL 352 (1880)
Q Consensus 303 ~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la~~v 352 (1880)
.++.....|.+-.+.-..-+.+++.+...+..++.|..|++||..++..-
T Consensus 229 ~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 229 NTLAGYIDWVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp HHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhccCHHHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCC
Confidence 88887777777544321112478888888887778999999999998643
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00042 Score=97.58 Aligned_cols=485 Identities=11% Similarity=0.083 Sum_probs=249.9
Q ss_pred CChhHHHHHHHhccCCCCcchhhccHhhHH-HHHHHh-CCCCHhHHHHHHHHHHhhhcCC----cccccHHHHHHHHHHH
Q 000194 573 ADVTVRHSIFSSLYGNRGFDDFLAQADCLS-AIFAAL-NDEDFDVREYAISVAGRLSEKN----PAYVLPALRRHLIQLL 646 (1880)
Q Consensus 573 ~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~-~L~~~l-~D~~~~VR~~a~~~l~~l~~~~----p~~v~p~l~~~l~~~l 646 (1880)
.+.++|..+-+.|. .|. .+++... ...... .+.+..||..|..+|....... |......+|..+++.+
T Consensus 25 ~~~~~r~~Ae~~L~---~~~---~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l 98 (1204)
T 3a6p_A 25 STQRYRLEALKFCE---EFK---EKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELI 98 (1204)
T ss_dssp CCHHHHHHHHHHHH---HHH---HHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH---HHH---hCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 37778988777663 111 1122222 222333 4557899999999999877542 3334456676666665
Q ss_pred HHHhcC--CCChHhHHHHHHHHHHHHHhC-cccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhc---C
Q 000194 647 TYLEQS--SADNKCREESAKLLGCLIRNC-ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG---G 720 (1880)
Q Consensus 647 ~~l~~~--~~~~~~r~~a~~~L~~l~~~~-~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~---g 720 (1880)
...... ......|...+.++..|++.. ++.. +.+++.++..+.. ++.....++.++..+.+-. .
T Consensus 99 ~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~------~~~~~e~~L~iL~~L~Eev~~~~ 168 (1204)
T 3a6p_A 99 ANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQ------GETQTELVMFILLRLAEDVVTFQ 168 (1204)
T ss_dssp HHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHT------CHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcC------CHHHHHHHHHHHHHHHHHHcccc
Confidence 433111 024677888899999999773 4333 3455555555543 3344556666666665421 0
Q ss_pred -----------CchhhhHHhHHHHHHHHHhcC------------------CchhhHHHHHHHHHHHHhhcCcccccCCcc
Q 000194 721 -----------FGMRQYISELMPLIVEALLDG------------------AAVTKREVAVSTLGQVVQSTGYVITPYNEY 771 (1880)
Q Consensus 721 -----------~~~~~~~~~l~p~l~~~l~d~------------------~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~ 771 (1880)
..+...++++++.+...+.+. .+...+..|+.+++..+........ ....
T Consensus 169 ~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i-~~~~ 247 (1204)
T 3a6p_A 169 TLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHI-TAEN 247 (1204)
T ss_dssp CSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHH-HTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHH-Hhcc
Confidence 124455667777777777541 1122445566666654443221100 0111
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCc
Q 000194 772 PQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSE 851 (1880)
Q Consensus 772 p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 851 (1880)
+.+++.++..+.+ +.+|.+|+.||..+....... ... ..++
T Consensus 248 ~~ll~~l~~~l~~---~~lr~~A~ecL~~i~s~~~~~-~~~----------------------------~~li------- 288 (1204)
T 3a6p_A 248 CKLLEILCLLLNE---QELQLGAAECLLIAVSRKGKL-EDR----------------------------KPLM------- 288 (1204)
T ss_dssp SHHHHHHHHGGGC---TTTHHHHHHHHHHHHTCCSCH-HHH----------------------------GGGG-------
T ss_pred chHHHHHHHHcCC---HHHHHHHHHHHHHHHhCCCCh-hhH----------------------------HHHH-------
Confidence 3588888877653 478999999998875421100 000 0000
Q ss_pred ccchHHHHHHHHHHhc--CC-ChhhhHHHHHHHHHHHHHHhC------------CCCCCCcchhhHHHHHHHhcCCcchh
Q 000194 852 DYYSTVAINSLMRILR--DP-SLASYHQKVVGSLMFIFKSMG------------LGCVPYLPKVLPDLFHTVRTCDDYLK 916 (1880)
Q Consensus 852 ~~~~~~vi~~Ll~~L~--d~-s~~~~~~~~~~al~~i~~~~~------------~~~~~~l~~iip~ll~~l~~~~~~~~ 916 (1880)
..+....+..++..+. ++ ...+.....+..++.++..+| ....+.+..+++.++.....++..+-
T Consensus 289 ~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs 368 (1204)
T 3a6p_A 289 VLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLR 368 (1204)
T ss_dssp GGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhH
Confidence 0111111222222221 11 101111122333333332221 13457888999999998887654444
Q ss_pred HHHHHHHHHHHHHH----HHhHHHhHHHHHHHHHHhhcCCCCCccccc--------------c-------cchhHHHHHH
Q 000194 917 DYITWKLGTLVSIV----RQHIRKYLQELFSLISELWSSFSLPATNRT--------------Y-------RGLPVLHLVQ 971 (1880)
Q Consensus 917 ~~~~~~l~~lv~~~----~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~--------------~-------~~~~~l~~i~ 971 (1880)
...+.....+++.. .+.+.+|++.+++++...+.+...|+.... . ....+..++.
T Consensus 369 ~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~ 448 (1204)
T 3a6p_A 369 SSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMR 448 (1204)
T ss_dssp HHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHH
Confidence 44444444443321 245678999999888443333222221000 0 0001233333
Q ss_pred HHHHHhhhhhhccchhhHHHHHHhcccc-c-c-------------------cCch---hhHHHHHHHHHH-Hhcch-hhh
Q 000194 972 QLCLALNDEFRTHLPVILPCCIQVLSDA-E-R-------------------CNDY---TYVLDILHTLEV-FGGTL-DEH 1025 (1880)
Q Consensus 972 ~l~~~l~~~f~~yl~~l~p~ll~~l~~~-~-~-------------------~~~~---~~~~~il~~l~~-~g~~~-~~~ 1025 (1880)
.++...+...-+|+ .+.+...+.+. + . +... +....++.++.. +.... .++
T Consensus 449 ~i~~v~p~~~l~~v---~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~ 525 (1204)
T 3a6p_A 449 LACRLDPKTSFQMA---GEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREE 525 (1204)
T ss_dssp HHHHHCHHHHHHHH---HHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHhcCHHHHHHHH---HHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 34444333332222 23333332210 0 0 0000 111222332221 10101 133
Q ss_pred hh-hhHHHHHHhhc--CCCcHHHHHHHHHHHHhhccccc-ccchhHhHHHHHHHhhCC------------CCHHHHHHHH
Q 000194 1026 MH-LLLPALIRLFK--VDAPVDIRRAAIETLTRLIPRVQ-VTGHISSLVHHLKLVLDG------------KNDELRKDAV 1089 (1880)
Q Consensus 1026 ~~-~ilp~l~~~l~--~~~~~~vr~~ai~~l~~l~~~~~-~~~~~~~ii~~l~~~l~~------------~~~~l~~~al 1089 (1880)
+. .++|.++..+- ....+.+|..++.+++.+..-.. -.++++.++..++..+.. .+.+++..|.
T Consensus 526 l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~ 605 (1204)
T 3a6p_A 526 IPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHAC 605 (1204)
T ss_dssp CCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHH
Confidence 32 35677776642 22356699999999988876532 224777777777766543 1347999999
Q ss_pred HHHHHHHHHhccccccchhHHHHHHHh
Q 000194 1090 DALCCLAHALGEDFTIFIPSIHKLLLK 1116 (1880)
Q Consensus 1090 ~~L~~l~~~~g~~f~~fip~i~~~l~~ 1116 (1880)
.++..|+...+..+.+|++.|...+..
T Consensus 606 ~al~~L~~~~~~~L~p~~~~i~~~~~~ 632 (1204)
T 3a6p_A 606 SSIIKMCRDYPQLVLPNFDMLYNHVKQ 632 (1204)
T ss_dssp HHHHHHHHHCHHHHGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999988886644
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.26 E-value=3.6e-06 Score=94.00 Aligned_cols=194 Identities=16% Similarity=0.142 Sum_probs=133.8
Q ss_pred hHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccC
Q 000194 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1880)
..+.|...+++++.++|..|+..|+.++..++.........-.++.+..+..+ ++...++.|+++|+.++...+.....
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 46677788899999999999999999998775432222221122333334344 57889999999999998544332211
Q ss_pred ch-HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH-HhHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 000194 680 YI-APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1880)
Q Consensus 680 y~-~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l 757 (1880)
.+ ...++.++..+.++ ++.++..++.+++.++....+.....+ ..++|.+++.+.+. +...|..|+++|+.+
T Consensus 92 i~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 92 VIDAGALPALVQLLSSP-----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNI 165 (210)
T ss_dssp HHHTTCHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCC-----cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 11 13567778888764 788999999999998753332222222 35799999999876 678999999999999
Q ss_pred HhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 758 VQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 758 ~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
+......... ..-...++.|.+++++ .+..+|+.++.+|+.+.
T Consensus 166 ~~~~~~~~~~-~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 166 ASGGNEQKQA-VKEAGALEKLEQLQSH-ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HTSCHHHHHH-HHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHC
T ss_pred HcCCcHHHHH-HHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHh
Confidence 8753221111 1113577888888875 47899999999998874
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00018 Score=91.00 Aligned_cols=346 Identities=13% Similarity=0.060 Sum_probs=201.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHHH--HHHHHHHhhhcCCChhhhhhHHHHH
Q 000194 17 GAGGGSLDALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFMD--QLYDRISGLLESNDAAENLGALRAI 93 (1880)
Q Consensus 17 ~~~~~~~~~~~~l~~~l~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~--~l~~~i~~l~~s~~~~~r~~~i~ai 93 (1880)
+.++.....+..+++.|++.+.+.+ .||..|..+.. -..+ ....+- --...+.+++++++...+..|+.||
T Consensus 41 ~~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~-----~~~~-~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL 114 (584)
T 3l6x_A 41 PPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCY-----RNDK-VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGAL 114 (584)
T ss_dssp CCCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT-----TCHH-HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred CCCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHc-----CChH-HHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHH
Confidence 3445555568889999988764443 47777766651 1111 111111 1245677889999999999999999
Q ss_pred hHhhccccCcchhHHHH--HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc---------
Q 000194 94 DELIDVALGENASKVSK--FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR--------- 162 (1880)
Q Consensus 94 ~~Li~~~~~~~~~~~~~--~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~--------- 162 (1880)
..|......++...+.+ ..+.|..++....+.++.+.|+.+|..|+.... ....++..-++.+++.+.
T Consensus 115 ~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~-~k~~I~~~alp~Lv~LL~~p~sg~~~~ 193 (584)
T 3l6x_A 115 KNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS-IKMEIVDHALHALTDEVIIPHSGWERE 193 (584)
T ss_dssp HHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGG-GHHHHHHHTHHHHHHHTHHHHHCCC--
T ss_pred HHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch-hhHHHHhccHHHHHHHHhccccccccc
Confidence 99975421122222222 234555666434578999999999999987421 122233333444444330
Q ss_pred --------CCCcchhHHHHHHHHHHHHhhcCc---cchhchHHHHHHHHHHhc------CCchhHHHHHHHHHHHHHHHH
Q 000194 163 --------GDRVEYRRFAAVLILKEMAENAST---VFNVHVAEFVDAIWVALR------DPTLAVRERAVEALRACLRVI 225 (1880)
Q Consensus 163 --------~~~~~~~R~aA~~~l~~la~~~p~---~l~~~l~~i~~~i~~~l~------D~~~~VR~aA~~al~~~~~~i 225 (1880)
...++..+..|.-+|+.|+.+.+. .+.. ...+++.++..++ +++..+.+.|..+|+.+....
T Consensus 194 ~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~-~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~ 272 (584)
T 3l6x_A 194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQV 272 (584)
T ss_dssp --------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-STTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTH
T ss_pred ccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccc
Confidence 112346677888999999865443 2221 1234444444433 466778888888888765432
Q ss_pred hhhchh--------------------hHHH--HHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch---hhhHHHH-
Q 000194 226 EKRETR--------------------WRVQ--WYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG---EFMMSRY- 279 (1880)
Q Consensus 226 ~~r~~~--------------------~~~~--~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~---~~~~~~~- 279 (1880)
....+. ...+ |....++.++.-|......+++.+|+-+|..|..+.+ ..+...+
T Consensus 273 ~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~ 352 (584)
T 3l6x_A 273 HREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALR 352 (584)
T ss_dssp HHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHT
T ss_pred cccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHH
Confidence 211000 0001 2233444444444333346788999999988876432 2222222
Q ss_pred -HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhh-HHHHHHHHHHHHHHHhhcCCCC----------cchHHHHHHH
Q 000194 280 -REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDR-FVTNYLKICMNHILTVLRIPAE----------RDSGFIALGE 347 (1880)
Q Consensus 280 -~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~-f~~~yl~~~~~~Ll~~L~~~~~----------r~~a~~alg~ 347 (1880)
...++.+..++.+.+..|++.++.+|..|+...... .+ -...+|.|...|..... ...|+.+|++
T Consensus 353 ~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I---~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~N 429 (584)
T 3l6x_A 353 QEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI---GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINE 429 (584)
T ss_dssp SHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH---HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH---HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHH
Confidence 345778888899999999999999999999754422 22 25688888888876521 2356666776
Q ss_pred HHhhchhhhhhhh-hHHHHHHHHhhcC
Q 000194 348 MAGALDGELFHYL-PTITSHLREAIAP 373 (1880)
Q Consensus 348 la~~v~~~~~p~l-~~i~~~l~~~l~~ 373 (1880)
++..-........ ...++.+...+..
T Consensus 430 L~a~~~~~~~~I~~~g~I~~Lv~LL~s 456 (584)
T 3l6x_A 430 VIAENLEAAKKLRETQGIEKLVLINKS 456 (584)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHTC
T ss_pred HhcCCHHHHHHHHHCCChHHHHHHHhC
Confidence 6533222211111 2345555555543
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00014 Score=73.30 Aligned_cols=182 Identities=16% Similarity=0.236 Sum_probs=132.0
Q ss_pred hhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccccc
Q 000194 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIR 678 (1880)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~ 678 (1880)
+++..+...|.|+-+.||..|+.++..+++..|...-|.+++.+ .+ +..+ +....-.+-++.+|.+++--|+.+.
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~-vm---~~ks-EaIpltqeIa~a~G~la~i~Pe~v~ 106 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLF-SL---LKKS-EAIPLTQEIAKAFGQMAKEKPELVK 106 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH-HH---HHHC-CSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH-HH---Hhhc-ccCchHHHHHHHHhHHHHhCHHHHH
Confidence 67888999999999999999999999999999988777666533 22 3445 4444445677899999988876654
Q ss_pred CchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 000194 679 PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVV 758 (1880)
Q Consensus 679 py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~ 758 (1880)
+ +++.+....+- .++..+.+..+++++++...+..+ +.+..-+...+.+. +...|.+|+..++.+.
T Consensus 107 ~----vVp~lfanyri-----gd~kikIn~~yaLeeIaranP~l~----~~v~rdi~smltsk-d~~Dkl~aLnFi~alG 172 (253)
T 2db0_A 107 S----MIPVLFANYRI-----GDEKTKINVSYALEEIAKANPMLM----ASIVRDFMSMLSSK-NREDKLTALNFIEAMG 172 (253)
T ss_dssp H----HHHHHHHHSCC-----CSHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHTSCS-SHHHHHHHHHHHHTCC
T ss_pred h----hHHHHHHHHhc-----CCccceecHHHHHHHHHHhChHHH----HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHh
Confidence 3 44455554443 378899999999999998765433 34445555566655 5678889998888776
Q ss_pred hhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCc
Q 000194 759 QSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDP 806 (1880)
Q Consensus 759 ~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp 806 (1880)
.+...-+.|| ++.|+.+|. +.+.-||-.++.+++-+....|
T Consensus 173 en~~~yv~Pf------LprL~aLL~-D~deiVRaSaVEtL~~lA~~np 213 (253)
T 2db0_A 173 ENSFKYVNPF------LPRIINLLH-DGDEIVRASAVEALVHLATLND 213 (253)
T ss_dssp TTTHHHHGGG------HHHHHGGGG-CSSHHHHHHHHHHHHHHHTSCH
T ss_pred ccCccccCcc------hHHHHHHHc-CcchhhhHHHHHHHHHHHHcCH
Confidence 6554334554 567777775 4478999999999998875444
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.029 Score=72.10 Aligned_cols=225 Identities=12% Similarity=0.144 Sum_probs=132.2
Q ss_pred cCCChhHHHHHHHhcc---CCCCcchhhccHhhHHHHHHHhCCCCHh---HHHHHHHHHHhhh-cCCcccccHHH--HHH
Q 000194 571 ADADVTVRHSIFSSLY---GNRGFDDFLAQADCLSAIFAALNDEDFD---VREYAISVAGRLS-EKNPAYVLPAL--RRH 641 (1880)
Q Consensus 571 ~d~~~~vR~~~l~~l~---~~~~fd~~L~~~~~l~~L~~~l~D~~~~---VR~~a~~~l~~l~-~~~p~~v~p~l--~~~ 641 (1880)
..+++.+|..+..+|. .+...-..+.+...++.|+..+.+.... +|..|..+|.++. ..+|..+.+.. ...
T Consensus 467 ~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~a 546 (778)
T 3opb_A 467 HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNA 546 (778)
T ss_dssp GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTH
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccc
Confidence 4456666665555442 1222122233344577777777665433 8999999999987 44554432100 022
Q ss_pred HHHHHHHHhcCCCC------------hHhHHHHHHHHHHHHHhCc---ccccC-chH--HHHHHHHHHhccCCCCCCChh
Q 000194 642 LIQLLTYLEQSSAD------------NKCREESAKLLGCLIRNCE---RLIRP-YIA--PIHKALVARLLEGTGINANNG 703 (1880)
Q Consensus 642 l~~~l~~l~~~~~~------------~~~r~~a~~~L~~l~~~~~---~~~~p-y~~--~il~~ll~~l~~~~~~~~~~~ 703 (1880)
+..++.-|..+++. ...+-+|+.+|..++.... +.++. .+. ..++.+...+.++ +..
T Consensus 547 I~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~-----n~~ 621 (778)
T 3opb_A 547 IPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE-----NVP 621 (778)
T ss_dssp HHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-----SHH
T ss_pred hHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-----CHH
Confidence 22233222211011 1236689999999998652 22221 222 3556666666653 778
Q ss_pred HHHHHHHHHHHHHHhcCCch-hhhH----Hh---HHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHH
Q 000194 704 IISGVLVTVGDLARVGGFGM-RQYI----SE---LMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLL 775 (1880)
Q Consensus 704 v~~~~~~~l~~La~~~g~~~-~~~~----~~---l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll 775 (1880)
++.+++.++..|+... +.+ ..++ +. =++.++..+. ..+.+.|.+|.++|+.+......+..-....+..+
T Consensus 622 VrrAA~elI~NL~~~~-e~i~~k~~~~~~~~~~~rL~lLV~Ll~-s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi 699 (778)
T 3opb_A 622 LQRSTLELISNMMSHP-LTIAAKFFNLENPQSLRNFNILVKLLQ-LSDVESQRAVAAIFANIATTIPLIAKELLTKKELI 699 (778)
T ss_dssp HHHHHHHHHHHHHTSG-GGTGGGTSCCSSHHHHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHhhcCchhhccHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccH
Confidence 9999999999998632 222 1232 11 2777887775 45788999999999998654443322223345788
Q ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHc
Q 000194 776 GLLLKMLNGE-LVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 776 ~~Ll~~L~~~-~~~~vr~~~l~~lg~lg 802 (1880)
+.++++++.. .+.++|..++.++.-+.
T Consensus 700 ~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 700 ENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 8888888752 47888888888877665
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-05 Score=88.97 Aligned_cols=193 Identities=14% Similarity=0.084 Sum_probs=134.5
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccch
Q 000194 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFN 189 (1880)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~ 189 (1880)
..++|..++. +.|.+++..|+++|+.|+.........+++ ..++.+++.|.++ ++..|..|+.+|+.++.+.+..-.
T Consensus 13 ~~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 13 ELPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp CHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hhHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHH
Confidence 3467778886 679999999999999998642212222222 2566777777644 567889999999999976554322
Q ss_pred hch-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH-HHHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q 000194 190 VHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW-YYRMFEATQDGLGRNAPVHSIHGSLLAVGEL 267 (1880)
Q Consensus 190 ~~l-~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~-~~~~l~~~~~~l~~~~~~~~~~~al~~l~~l 267 (1880)
..+ ...++.++..|.++++.||..|+.+|+.+... ........ -...++.+...+.++ +.+++..++.+|..+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASG----GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNI 165 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS----CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC----CHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 111 24778899999999999999999999987531 11111111 234677777777766 468899999999999
Q ss_pred HHcchhhhHHHH-HHHHHHHHHHhhcchhHHHHHHHHHhHhHhh
Q 000194 268 LRNTGEFMMSRY-REVAEIVLRYLEHRDRLVRLSITSLLPRIAH 310 (1880)
Q Consensus 268 l~~~~~~~~~~~-~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~ 310 (1880)
.....+....-. ...++.+...+.+.++.||+.++.+|..++.
T Consensus 166 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 166 ASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 875433221111 1366778888899999999999999998874
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00014 Score=91.43 Aligned_cols=399 Identities=13% Similarity=0.099 Sum_probs=203.5
Q ss_pred HHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHH-HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccC
Q 000194 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1880)
Q Consensus 601 l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1880)
++.+...|+.++.++|..|...|+.++..++..-..... ..+..++. +..+ ++...+..|+++|..|+...++.-..
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~-lL~s-~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVD-LLRS-PNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHH-HTTS-SCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHH-HHcC-CCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 566677777778899999999999999776532111111 11222333 3344 57888999999999998643321111
Q ss_pred ch-HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhh-hHHhHHHHHHHHHh--------cC-------C
Q 000194 680 YI-APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQ-YISELMPLIVEALL--------DG-------A 742 (1880)
Q Consensus 680 y~-~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~-~~~~l~p~l~~~l~--------d~-------~ 742 (1880)
.+ ...++.|+..+... .++.++..++.+|+.|+.. +.... .+...+|.+++.+. +. .
T Consensus 82 i~~~G~i~~Lv~lL~~~----~~~~~~~~a~~aL~nLa~~--~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRT----GNAEIQKQLTGLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHTTCHHHHHHHHTTC----CCHHHHHHHHHHHHHHHTS--SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHHcCCHHHHHHHHhhC----CCHHHHHHHHHHHHHHhcC--HHhHHHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 11 13466777778732 2788999999999999865 33333 33478999999983 11 1
Q ss_pred chhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHcc----cCccchhhcc
Q 000194 743 AVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNG-----ELVWSTRREVLKVLGIMGA----LDPHAHKRNQ 813 (1880)
Q Consensus 743 ~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~-----~~~~~vr~~~l~~lg~lga----ldp~~~~~~~ 813 (1880)
+.+....|+++|..++.. .....-....+..++.|+.+|++ ..+.++...++.++..+.. ..|.......
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 223344999999999865 21111111122466666666653 1223455555555544321 0010000000
Q ss_pred c-cCCCcc--cc---cccCCCCCCCCCCCcc-cccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHH
Q 000194 814 Q-LSGSHG--EV---TRAASDSGQHIQPMDE-FPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIF 886 (1880)
Q Consensus 814 ~-~~~~~~--~~---~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~ 886 (1880)
. ...... +. ......... ....+. +... .......+..+..-+++.|+..|++.+.......++.|+..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~ 312 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMM-NNNYDCPLPEE-ETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLT 312 (457)
T ss_dssp HTC-----------------------------CCCC-CSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred cccccccccccccchhhccchhhh-hccccCCcccc-ccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhc
Confidence 0 000000 00 000000000 000000 0000 0000111223445677888888876544445556666666665
Q ss_pred HHhCCCCCCCc-------chhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccc
Q 000194 887 KSMGLGCVPYL-------PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR 959 (1880)
Q Consensus 887 ~~~~~~~~~~l-------~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~ 959 (1880)
..-+. ..+++ ...+|.++..+++.++.++..+.+.++.+... +
T Consensus 313 ~~~~~-~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~--------------------------- 362 (457)
T 1xm9_A 313 ASKGL-MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--P--------------------------- 362 (457)
T ss_dssp TCSSS-HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--G---------------------------
T ss_pred cCcCc-chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--H---------------------------
Confidence 32111 00111 35678888888888777777777766665420 0
Q ss_pred cccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhccccccc--CchhhHHHHHHHHHHHhcchhhhhh-----hhHHH
Q 000194 960 TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERC--NDYTYVLDILHTLEVFGGTLDEHMH-----LLLPA 1032 (1880)
Q Consensus 960 ~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~--~~~~~~~~il~~l~~~g~~~~~~~~-----~ilp~ 1032 (1880)
....++. ...+|.+++.|...+.. .+..+...++.++..+...-+++.. -.+|.
T Consensus 363 -----~~~~~i~--------------~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~ 423 (457)
T 1xm9_A 363 -----LLHRVMG--------------NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNN 423 (457)
T ss_dssp -----GGHHHHH--------------HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHH
T ss_pred -----HHHHHHH--------------HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHH
Confidence 1111111 12456667777543211 1112333444444433221122222 24677
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHhhccc
Q 000194 1033 LIRLFKVDAPVDIRRAAIETLTRLIPR 1059 (1880)
Q Consensus 1033 l~~~l~~~~~~~vr~~ai~~l~~l~~~ 1059 (1880)
|++++..+.+..+++.|...|..+...
T Consensus 424 L~~L~~~~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 424 IINLCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHcc
Confidence 777776554677888888888777654
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00011 Score=92.60 Aligned_cols=314 Identities=11% Similarity=0.047 Sum_probs=186.2
Q ss_pred HHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHH--HHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccC
Q 000194 26 LNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFM--DQLYDRISGLLESNDAAENLGALRAIDELIDVALG 102 (1880)
Q Consensus 26 ~~~l~~~l~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~--~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~ 102 (1880)
+..+++.|++.+.+.+ .|+..|+.+.. . .+.....+ ....+.+.+++++++...+..|..++..|.... .
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~----~--~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~ 76 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCF----Q--DESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-T 76 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTS----S--CSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-H
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHc----C--ChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-H
Confidence 5678888888865444 48777777651 1 11111111 123556677888999999999999999997541 1
Q ss_pred cchhHHHH--HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc--------CC-------C
Q 000194 103 ENASKVSK--FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR--------GD-------R 165 (1880)
Q Consensus 103 ~~~~~~~~--~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~--------~~-------~ 165 (1880)
+....+.+ ..+.|..++..+.+.++.+.|+++|+.|+.. ......+++..++.+++.|. ++ .
T Consensus 77 ~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 77 TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 22222221 1356666664355899999999999999976 22333355667777777772 11 1
Q ss_pred cchhHHHHHHHHHHHHhhcCccchhch--HHHHHHHHHHhcC------CchhHHHHHHHHHHHHHHHHhhhch-------
Q 000194 166 VEYRRFAAVLILKEMAENASTVFNVHV--AEFVDAIWVALRD------PTLAVRERAVEALRACLRVIEKRET------- 230 (1880)
Q Consensus 166 ~~~~R~aA~~~l~~la~~~p~~l~~~l--~~i~~~i~~~l~D------~~~~VR~aA~~al~~~~~~i~~r~~------- 230 (1880)
+......|+.+|+.|+.+ |....... +..++.+...|++ ++..+.+.|..+++.+........+
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 223334788999999976 54222112 1455655555543 5667777777777665311100000
Q ss_pred ----------------------------------------hhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc
Q 000194 231 ----------------------------------------RWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN 270 (1880)
Q Consensus 231 ----------------------------------------~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~ 270 (1880)
..+.-|....++.+..-|....+.+++.+|+-+|..+..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~ 314 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS 314 (457)
T ss_dssp HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccC
Confidence 0000012223333344443333457788888888888764
Q ss_pred chh---hh-HHHH--HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCC-c-----
Q 000194 271 TGE---FM-MSRY--REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAE-R----- 338 (1880)
Q Consensus 271 ~~~---~~-~~~~--~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~-r----- 338 (1880)
.++ .+ ...+ ...++.++.++.+.+..||+.++.+|..++....- ....-...++.|...|..... +
T Consensus 315 ~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~--~~~i~~~~i~~Lv~lL~~~~~~~~~~~~ 392 (457)
T 1xm9_A 315 KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL--HRVMGNQVFPEVTRLLTSHTGNTSNSED 392 (457)
T ss_dssp SSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG--HHHHHHHTHHHHHHTTTSCCSCSTTHHH
T ss_pred cCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHH--HHHHHHhhhHHHHHhccCCCCCCCCcHH
Confidence 433 22 2222 23567888889999999999999999999874322 111224678888888875421 1
Q ss_pred --chHHHHHHHHHh
Q 000194 339 --DSGFIALGEMAG 350 (1880)
Q Consensus 339 --~~a~~alg~la~ 350 (1880)
..++.+|+++..
T Consensus 393 v~~~~l~~l~ni~~ 406 (457)
T 1xm9_A 393 ILSSACYTVRNLMA 406 (457)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 256666666653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0016 Score=80.11 Aligned_cols=357 Identities=12% Similarity=0.108 Sum_probs=207.9
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHHH
Q 000194 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWYE 1365 (1880)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~e 1365 (1880)
++....+.|.|..|+.+++..+... ++.......|..+|.+.|+.|.+.-.++.+... .. ....+..|.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~ 78 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 5677788899999998887766432 344567778899999999999988777643321 11 122344588
Q ss_pred HhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhHHHHHHHHHHHcCCh
Q 000194 1366 KLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW--TPAEPAARLEMAPMAANAAWNMGEW 1443 (1880)
Q Consensus 1366 ~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~~~~~a~aaw~l~~W 1443 (1880)
+.|+|++|+..|++.+...++. .+...++..++...|+|+.-....+... .+..... ....+.....+|+|
T Consensus 79 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~l~~~~~~~g~~ 151 (388)
T 1w3b_A 79 ERGQLQEAIEHYRHALRLKPDF---IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV----RSDLGNLLKALGRL 151 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHH----HHHHHHHHHTTSCH
T ss_pred HCCCHHHHHHHHHHHHHcCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH----HHHHHHHHHHccCH
Confidence 9999999999999988654432 3456778888999999866554443211 1111111 11223344555666
Q ss_pred hhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCC
Q 000194 1444 DQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVG 1523 (1880)
Q Consensus 1444 d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~ELeE~i~~~~~~~~ 1523 (1880)
+.-.++....-... ......+..+-.+ .....+.++.+.
T Consensus 152 ~~A~~~~~~al~~~----------------p~~~~~~~~l~~~------------------~~~~g~~~~A~~------- 190 (388)
T 1w3b_A 152 EEAKACYLKAIETQ----------------PNFAVAWSNLGCV------------------FNAQGEIWLAIH------- 190 (388)
T ss_dssp HHHHHHHHHHHHHC----------------TTCHHHHHHHHHH------------------HHTTTCHHHHHH-------
T ss_pred HHHHHHHHHHHHhC----------------CCCHHHHHHHHHH------------------HHHcCCHHHHHH-------
Confidence 55444332210000 0000000000000 000111111111
Q ss_pred CCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC
Q 000194 1524 NPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETS 1603 (1880)
Q Consensus 1524 ~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~ 1603 (1880)
.+++.+. +.| .+...|...+.+..+.|+++.|...+.++...+|.
T Consensus 191 ---------------------------~~~~al~-----~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-- 235 (388)
T 1w3b_A 191 ---------------------------HFEKAVT-----LDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-- 235 (388)
T ss_dssp ---------------------------HHHHHHH-----HCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT--
T ss_pred ---------------------------HHHHHHh-----cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC--
Confidence 1111111 122 34667788888888888888888888887766542
Q ss_pred cccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHh
Q 000194 1604 HENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKR 1683 (1880)
Q Consensus 1604 ~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~ 1683 (1880)
.+.+....+..++..|+ ..+|+..+++.+.... . ...++..+|....
T Consensus 236 --------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p------------------~----~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 236 --------HAVVHGNLACVYYEQGL---IDLAIDTYRRAIELQP------------------H----FPDAYCNLANALK 282 (388)
T ss_dssp --------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCS------------------S----CHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC------------------C----CHHHHHHHHHHHH
Confidence 35666677777778884 5778888877654210 0 0122344444443
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCc
Q 000194 1684 ALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVD 1763 (1880)
Q Consensus 1684 ~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~ 1763 (1880)
.. ...++....|.++++.+|+...+|..+|....+ . .-...|+..|-+++... .
T Consensus 283 ~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-------~-------g~~~~A~~~~~~al~~~------p 336 (388)
T 1w3b_A 283 EK------GSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-------Q-------GNIEEAVRLYRKALEVF------P 336 (388)
T ss_dssp HH------SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-------T-------TCHHHHHHHHHHHTTSC------T
T ss_pred Hc------CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-------c-------CCHHHHHHHHHHHHhcC------C
Confidence 33 235677888888888888888888877765432 1 12346777888877663 2
Q ss_pred chHHhHHHHHHHHHhcCCcHHHHHHHHhcccC
Q 000194 1764 DSLQDILRLLTLWFNHGATEEVQIALQKGFAH 1795 (1880)
Q Consensus 1764 ~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ 1795 (1880)
........+-.+++..|..++....+++.+..
T Consensus 337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23445566677777778877776666666543
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=6.5e-05 Score=87.52 Aligned_cols=195 Identities=15% Similarity=0.113 Sum_probs=133.7
Q ss_pred hhHHHHHH-HhCCCCHhHHHHHHHHHHhhhcCCcccccHHHH-HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccc
Q 000194 599 DCLSAIFA-ALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL 676 (1880)
Q Consensus 599 ~~l~~L~~-~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~ 676 (1880)
..++.++. +|+.++.+||..|+++||.++..+|..-.-.+. ..+..++.-+..+ .+...|+.|+++|+.+++..+..
T Consensus 81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~-~~~~v~~~A~~ALsnl~~~~~~~ 159 (296)
T 1xqr_A 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD-ACDTVRVKALFAISCLVREQEAG 159 (296)
T ss_dssp THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccC-CCHHHHHHHHHHHHHHHcCCcHH
Confidence 35777888 899999999999999999999988742100010 1223334444444 46788999999999999876654
Q ss_pred ccCchH-HHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH--HhHHHHHHHHHhcCCchhhHHHHHHH
Q 000194 677 IRPYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDGAAVTKREVAVST 753 (1880)
Q Consensus 677 ~~py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~l~p~l~~~l~d~~~~~~r~~Al~~ 753 (1880)
...+.. ..++.|+..+.++ +..++..++.+|+.++....+ ...++ ..++|.++..|... +..+++.|+.+
T Consensus 160 ~~~~~~~ggi~~L~~lL~~~-----d~~v~~~A~~aLs~L~~~~~~-~~~~vv~~g~i~~Lv~LL~~~-d~~v~~~al~a 232 (296)
T 1xqr_A 160 LLQFLRLDGFSVLMRAMQQQ-----VQKLKVKSAFLLQNLLVGHPE-HKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGA 232 (296)
T ss_dssp HHHHHHTTHHHHHHHHHHSS-----CHHHHHHHHHHHHHHHHHCGG-GHHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHHhCChH-HHHHHHHcCCHHHHHHHHcCC-ChhHHHHHHHH
Confidence 444433 5677888888764 788999999999999876333 33333 25789999999865 57899999999
Q ss_pred HHHHHhhcCccc----ccCCcchHHHHHHHHHhc-CCCCHHHHHHHHHHHHHH
Q 000194 754 LGQVVQSTGYVI----TPYNEYPQLLGLLLKMLN-GELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 754 Lg~l~~~~~~~i----~p~~~~p~ll~~Ll~~L~-~~~~~~vr~~~l~~lg~l 801 (1880)
|+.++....... .+...+..+++.....++ .+...++...+.+++-.+
T Consensus 233 L~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 233 LCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTC 285 (296)
T ss_dssp HHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 999987743211 111224566666666666 333567777676666543
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.016 Score=74.52 Aligned_cols=136 Identities=13% Similarity=0.157 Sum_probs=85.5
Q ss_pred hHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccc----c----HHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHH
Q 000194 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV----L----PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIR 671 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v----~----p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~ 671 (1880)
.++.|...+.+++..||++|.++++.|+. +|..+ . |.-.+-+ +.|-.+..+ ++.+.|..|+++|..+..
T Consensus 607 a~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL-~lLV~Ll~s-~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 607 YWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNF-NILVKLLQL-SDVESQRAVAAIFANIAT 683 (778)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHH-HHHHHGGGC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccH-HHHHHHHcC-CCHHHHHHHHHHHHHhcC
Confidence 46667777778889999999999999997 55422 1 2111112 333344456 788999999999999875
Q ss_pred hCcccccCch--HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcC-----CchhhhH--HhHHHHHHHHHhcC
Q 000194 672 NCERLIRPYI--APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG-----FGMRQYI--SELMPLIVEALLDG 741 (1880)
Q Consensus 672 ~~~~~~~py~--~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g-----~~~~~~~--~~l~p~l~~~l~d~ 741 (1880)
..+...+-.+ ...++.++..+.+.. .+.+++..++.++..|+.... +.+..+. ..+...+.+.++.+
T Consensus 684 ~~~~ia~~ll~~~~gi~~Ll~lL~~~~---~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~ 759 (778)
T 3opb_A 684 TIPLIAKELLTKKELIENAIQVFADQI---DDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRG 759 (778)
T ss_dssp HCHHHHHHHTTCHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHccccHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence 5443222111 346667777777621 278899999999999987432 3344443 23444555555443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00018 Score=94.13 Aligned_cols=248 Identities=10% Similarity=0.025 Sum_probs=159.2
Q ss_pred hhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc
Q 000194 83 AAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR 162 (1880)
Q Consensus 83 ~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~ 162 (1880)
...|.||++|++-.--+. ++ ....+.|..++. +++..++..|+-++|.+-.. +-..+.++.++..+.
T Consensus 451 ~~ir~gAaLGLGla~~GS-~~-----eev~e~L~~~L~-dd~~~~~~~AalALGli~vG--Tgn~~ai~~LL~~~~---- 517 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGS-AN-----IEVYEALKEVLY-NDSATSGEAAALGMGLCMLG--TGKPEAIHDMFTYSQ---- 517 (963)
T ss_dssp HHHHHHHHHHHHHHSTTC-CC-----HHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhcCC-CC-----HHHHHHHHHHHh-cCCHHHHHHHHHHHhhhhcc--cCCHHHHHHHHHHHh----
Confidence 568899999999874332 22 134566666664 44556677899999976442 234455555555444
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHH
Q 000194 163 GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFE 242 (1880)
Q Consensus 163 ~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~ 242 (1880)
++.++..|.++++.|+.+.-+.+.... .++..+ ..|.++.+|.+|+.|++.... . ......++.++.
T Consensus 518 e~~~e~vrR~aalgLGll~~g~~e~~~----~li~~L---~~~~dp~vRygaa~alglAya--G----TGn~~aIq~LL~ 584 (963)
T 4ady_A 518 ETQHGNITRGLAVGLALINYGRQELAD----DLITKM---LASDESLLRYGGAFTIALAYA--G----TGNNSAVKRLLH 584 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTTTCGGGGH----HHHHHH---HHCSCHHHHHHHHHHHHHHTT--T----SCCHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHhhhCCChHHHH----HHHHHH---HhCCCHHHHHHHHHHHHHHhc--C----CCCHHHHHHHHH
Confidence 345667788889999988777665432 333322 237899999999988873211 1 112234455555
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHH-hhcchhHHHHHHHHHhHhHhhhChhhHHHHHH
Q 000194 243 ATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRY-LEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL 321 (1880)
Q Consensus 243 ~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~-~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl 321 (1880)
.+.. +. +.++|.+|+.+|+.++-...+ .+..++.. .++.++.||..+..++|.++.-.+.
T Consensus 585 ~~~~---d~-~d~VRraAViaLGlI~~g~~e--------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------- 645 (963)
T 4ady_A 585 VAVS---DS-NDDVRRAAVIALGFVLLRDYT--------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------- 645 (963)
T ss_dssp HHHH---CS-CHHHHHHHHHHHHHHTSSSCS--------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------
T ss_pred Hhcc---CC-cHHHHHHHHHHHHhhccCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------
Confidence 5543 22 357899999999977654332 23333332 3568999999999999999866553
Q ss_pred HHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCC
Q 000194 322 KICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRR 375 (1880)
Q Consensus 322 ~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~ 375 (1880)
..++..|...+.+.. .|..|+.+||.++....+...|.+..+...+.....++.
T Consensus 646 ~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~ 701 (963)
T 4ady_A 646 QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKH 701 (963)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhccc
Confidence 344554444554443 488999999999877666556777777777777775543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0016 Score=85.30 Aligned_cols=292 Identities=15% Similarity=0.134 Sum_probs=175.4
Q ss_pred HHHHhhhcc---CCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCC------
Q 000194 504 RDSVVLYLD---DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADAD------ 574 (1880)
Q Consensus 504 ~~~~~~~l~---~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~------ 574 (1880)
...+.+|+. +.++.+|..|..+++.+..... .. ++.-|... +.+++
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--------------------~~----~~~lL~~~-L~~~~~~~~~~ 448 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--------------------RD----TTDYLKNI-IVENSGTSGDE 448 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--------------------HH----HHHHHHHH-HHHHSSCCSCH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--------------------HH----HHHHHHHH-HcCcccccccc
Confidence 345567776 5678899888888776553110 11 22222222 22233
Q ss_pred --hhHHHHHHHhccCCCCcchhh--ccHhhHHHHHHHhCCCCHhHHHHHHHHHHhh--hcCCcccccHHHHHHHHHHHHH
Q 000194 575 --VTVRHSIFSSLYGNRGFDDFL--AQADCLSAIFAALNDEDFDVREYAISVAGRL--SEKNPAYVLPALRRHLIQLLTY 648 (1880)
Q Consensus 575 --~~vR~~~l~~l~~~~~fd~~L--~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l--~~~~p~~v~p~l~~~l~~~l~~ 648 (1880)
+.+|..+.-.|+. -++ ...+++..|...+.|++..+|..|.-.+|-+ ...|+. .+. .++..
T Consensus 449 ~~~~ir~gAaLGLGl-----a~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~----ai~----~LL~~ 515 (963)
T 4ady_A 449 DVDVLLHGASLGIGL-----AAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE----AIH----DMFTY 515 (963)
T ss_dssp HHHHHHHHHHHHHHH-----HSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH----HHH----HHHHH
T ss_pred ccHHHHHHHHHHHHH-----HhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH----HHH----HHHHH
Confidence 6788887777752 111 1246788888888888888898888888876 333321 122 22222
Q ss_pred HhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHH
Q 000194 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS 728 (1880)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~ 728 (1880)
+..+ .+...|..++..||.+.-..++. ++.+++ .+... .++.++.+++.++|-. ..|..-.
T Consensus 516 ~~e~-~~e~vrR~aalgLGll~~g~~e~----~~~li~----~L~~~----~dp~vRygaa~alglA--yaGTGn~---- 576 (963)
T 4ady_A 516 SQET-QHGNITRGLAVGLALINYGRQEL----ADDLIT----KMLAS----DESLLRYGGAFTIALA--YAGTGNN---- 576 (963)
T ss_dssp HHHC-SCHHHHHHHHHHHHHHTTTCGGG----GHHHHH----HHHHC----SCHHHHHHHHHHHHHH--TTTSCCH----
T ss_pred Hhcc-CcHHHHHHHHHHHHhhhCCChHH----HHHHHH----HHHhC----CCHHHHHHHHHHHHHH--hcCCCCH----
Confidence 2233 34567777888888775443332 344444 34432 2778888777776632 2222222
Q ss_pred hHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccc
Q 000194 729 ELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHA 808 (1880)
Q Consensus 729 ~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~ 808 (1880)
..+..++..+.+..+..+|..|+.+||.+.-.. | +..+.++..|....++.+|+.+..++|.+++-.|.
T Consensus 577 ~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~-----~-----e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~- 645 (963)
T 4ady_A 577 SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD-----Y-----TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL- 645 (963)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS-----C-----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC-----H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-
Confidence 334444444443335679999999999875332 1 22333444444455899999999999998752211
Q ss_pred hhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHH
Q 000194 809 HKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKS 888 (1880)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~ 888 (1880)
..++..|.+.+.|+.. .+...++.|+..|...
T Consensus 646 -----------------------------------------------~~aid~L~~L~~D~d~-~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 646 -----------------------------------------------QSAIDVLDPLTKDPVD-FVRQAAMIALSMILIQ 677 (963)
T ss_dssp -----------------------------------------------HHHHHHHHHHHTCSSH-HHHHHHHHHHHHHSTT
T ss_pred -----------------------------------------------HHHHHHHHHHccCCCH-HHHHHHHHHHHHHhcC
Confidence 3466778888888765 3445677777777655
Q ss_pred hCCCCCCCcchhhHHHHHHHhcC
Q 000194 889 MGLGCVPYLPKVLPDLFHTVRTC 911 (1880)
Q Consensus 889 ~~~~~~~~l~~iip~ll~~l~~~ 911 (1880)
......|.+.+++..+...+.+.
T Consensus 678 tnna~~~rva~~l~~L~~~~~dk 700 (963)
T 4ady_A 678 QTEKLNPQVADINKNFLSVITNK 700 (963)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHCS
T ss_pred CccccchHHHHHHHHHHHHHhcc
Confidence 44555678888888888887653
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0015 Score=65.96 Aligned_cols=216 Identities=13% Similarity=0.121 Sum_probs=158.5
Q ss_pred HHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCch
Q 000194 68 DQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTA 147 (1880)
Q Consensus 68 ~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~ 147 (1880)
.++.+.+..++...-|..+..|+..+..+.....+--.+.+.++.-.++ .+.-...-...++++|.++.. .+
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~----ksEaIpltqeIa~a~G~la~i----~P 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK----KSEAIPLTQEIAKAFGQMAKE----KP 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH----HCCSHHHHHHHHHHHHHHHHH----CH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh----hcccCchHHHHHHHHhHHHHh----CH
Confidence 3455556667777778899999999888876542222333333333333 244466668889999999996 78
Q ss_pred hHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q 000194 148 DEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK 227 (1880)
Q Consensus 148 ~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~ 227 (1880)
+.|...++-.+.-.+-. ++..|..-..+|++++..-|..+. .++.-|...+.||+..=|-+|.+-++++
T Consensus 103 e~v~~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~~----~v~rdi~smltskd~~Dkl~aLnFi~al------ 171 (253)
T 2db0_A 103 ELVKSMIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLMA----SIVRDFMSMLSSKNREDKLTALNFIEAM------ 171 (253)
T ss_dssp HHHHHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHTSCSSHHHHHHHHHHHHTC------
T ss_pred HHHHhhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHHH----HHHHHHHHHhcCCChHHHHHHHHHHHHH------
Confidence 99999999888776532 556788888899999999888754 6777777888899977777776644432
Q ss_pred hchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHh
Q 000194 228 RETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPR 307 (1880)
Q Consensus 228 r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~ 307 (1880)
+..+..+...++|.+..-|.+.+ .-+|.++...|+.+.+.. |.+++++...+.-+++++..|++.+.+.++.
T Consensus 172 --Gen~~~yv~PfLprL~aLL~D~d-eiVRaSaVEtL~~lA~~n-----pklRkii~~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 172 --GENSFKYVNPFLPRIINLLHDGD-EIVRASAVEALVHLATLN-----DKLRKVVIKRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp --CTTTHHHHGGGHHHHHGGGGCSS-HHHHHHHHHHHHHHHTSC-----HHHHHHHHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred --hccCccccCcchHHHHHHHcCcc-hhhhHHHHHHHHHHHHcC-----HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 12445677888999988888764 678888888999888643 5577777777777899999999999999888
Q ss_pred Hhh
Q 000194 308 IAH 310 (1880)
Q Consensus 308 la~ 310 (1880)
++.
T Consensus 244 l~l 246 (253)
T 2db0_A 244 LLL 246 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0077 Score=78.75 Aligned_cols=167 Identities=14% Similarity=0.123 Sum_probs=107.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|..++.+..+.|+++.|...+.++....+. .+......+..+...|+ ..+|+..+++.+...
T Consensus 405 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG----------THLPYLFLGMQHMQLGN---ILLANEYLQSSYALF 471 (597)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT----------CSHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----------chHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 45778888888888889999888888887765442 24555666777777774 578888888766431
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhh------ccc-chHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQC------ATK-WGKAWHSWA 1719 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~------~~~-~~k~w~~wA 1719 (1880)
.. + ...+..+|...... ...++..+.|+++.+. +|+ +..+|..+|
T Consensus 472 ~~------------------~----~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 523 (597)
T 2xpi_A 472 QY------------------D----PLLLNELGVVAFNK------SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG 523 (597)
T ss_dssp CC------------------C----HHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred CC------------------C----hHHHHHHHHHHHHh------CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 10 0 12233444443332 2357788888888777 444 367788777
Q ss_pred HHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000194 1720 LFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1880)
Q Consensus 1720 ~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1880)
..+.+. .-...|++.|-+++... +. .......+..++...|..++..+.+++.+.
T Consensus 524 ~~~~~~--------------g~~~~A~~~~~~~~~~~-----p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 524 HAYRKL--------------KMYDAAIDALNQGLLLS-----TN-DANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHT--------------TCHHHHHHHHHHHHHHS-----SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHh--------------cCHHHHHHHHHHHHHhC-----CC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 765541 12346777787777764 22 234456666777788887777666666554
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00041 Score=80.80 Aligned_cols=179 Identities=13% Similarity=0.117 Sum_probs=120.1
Q ss_pred hhhhhHHHHHhHhhccccCcchhHHHH--HHHHHHh-hcccCCChHHHHHHHHHHHHHhhhCCCCchhHHH-HHHHHHHh
Q 000194 84 AENLGALRAIDELIDVALGENASKVSK--FSNYMRT-VFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALD 159 (1880)
Q Consensus 84 ~~r~~~i~ai~~Li~~~~~~~~~~~~~--~~~~L~~-~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~-~~~~~~~~ 159 (1880)
..|..|+..+..++.-. ++...+.+ -.+.|.. ++. +.+++++..|++++|.++.........+++ ..++.++.
T Consensus 55 e~k~~Al~~L~~lv~~~--dna~~~~~~G~l~~Lv~~lL~-s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 55 QEREGALELLADLCENM--DNAADFCQLSGMHLLVGRYLE-AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCh--hhHHHHHHcCCHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 46777777777776532 12222111 1234445 675 568999999999999998752222222333 35677777
Q ss_pred hhcCCCcchhHHHHHHHHHHHHhhcCccchhch-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHH-
Q 000194 160 WLRGDRVEYRRFAAVLILKEMAENASTVFNVHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY- 237 (1880)
Q Consensus 160 ~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l-~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~- 237 (1880)
.|.++.+...|..|+.+|+.++.+.|......+ ...++.+...|+++++.||..|+.||+.+... ....+....
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~----~~~~~~~vv~ 207 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG----HPEHKGTLCS 207 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH----CGGGHHHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC----ChHHHHHHHH
Confidence 776555567888999999999987665333222 35788899999999999999999999987653 111222222
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc
Q 000194 238 YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN 270 (1880)
Q Consensus 238 ~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~ 270 (1880)
..+++.+..-|.+++ .+++..++.+|+.++..
T Consensus 208 ~g~i~~Lv~LL~~~d-~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 208 MGMVQQLVALVRTEH-SPFHEHVLGALCSLVTD 239 (296)
T ss_dssp TTHHHHHHHHHTSCC-STHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHcCCC-hhHHHHHHHHHHHHHhC
Confidence 246666666676664 67899999999999875
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.013 Score=76.50 Aligned_cols=166 Identities=13% Similarity=0.031 Sum_probs=91.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|..++..+.+.|+++.|...+.++.+..+. .+.+....+......|+ ..+|+..+++.+....
T Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~ 404 (597)
T 2xpi_A 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE----------KAVTWLAVGIYYLCVNK---ISEARRYFSKSSTMDP 404 (597)
T ss_dssp CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------SHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc----------cHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCC
Confidence 3455666666666666666666666655543321 24444555566666663 4566666665543110
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1880)
.. ...-..++.+|...|+ .++.++.|+++.+..|+...+|...|..+.+.
T Consensus 405 ~~---------------~~~~~~l~~~~~~~g~-------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 454 (597)
T 2xpi_A 405 QF---------------GPAWIGFAHSFAIEGE-------------HDQAISAYTTAARLFQGTHLPYLFLGMQHMQL-- 454 (597)
T ss_dssp TC---------------HHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH--
T ss_pred CC---------------HHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCccchHHHHHHHHHHHHc--
Confidence 00 0001123333333333 35666777777777777777777666554431
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000194 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1880)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1880)
.-...|++.|-+++... +. .......+..+++..|..++..+.+++.+.
T Consensus 455 ------------g~~~~A~~~~~~~~~~~-----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 455 ------------GNILLANEYLQSSYALF-----QY-DPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp ------------TCHHHHHHHHHHHHHHC-----CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHHhC-----CC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 12346777777777663 22 234456677777888887776666665543
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00066 Score=85.90 Aligned_cols=354 Identities=12% Similarity=0.090 Sum_probs=197.8
Q ss_pred HhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHH--HHHHHHHHHHHhcCCChhHHHHHHHh
Q 000194 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI--EELVEKLLIAAVADADVTVRHSIFSS 584 (1880)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1880)
++.++.+++++++..|+.++..+...... ....+ ...++.|+.. +..++++++..+..+
T Consensus 53 LV~~L~s~~~~~q~~Aa~~L~~La~~~~~------------------~k~~V~~~G~Ip~LV~L-L~s~~~~vq~~Aa~A 113 (584)
T 3l6x_A 53 VIAMLGFRLDAVKSNAAAYLQHLCYRNDK------------------VKTDVRKLKGIPVLVGL-LDHPKKEVHLGACGA 113 (584)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTCHH------------------HHHHHHHTTHHHHHHHG-GGCSSHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCChH------------------HHHHHHHcCCcHHHHHH-HCCCCHHHHHHHHHH
Confidence 34667788899998888877766532210 11111 2345666654 567889999888777
Q ss_pred ccC---C--CCcchhhccHhhHHHHHHHhCC-CCHhHHHHHHHHHHhhhcCCcccccHHHHHH---HHHHHHH-------
Q 000194 585 LYG---N--RGFDDFLAQADCLSAIFAALND-EDFDVREYAISVAGRLSEKNPAYVLPALRRH---LIQLLTY------- 648 (1880)
Q Consensus 585 l~~---~--~~fd~~L~~~~~l~~L~~~l~D-~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~---l~~~l~~------- 648 (1880)
|.. . ...-..+.....++.|+..|.. .+.++++.|..+|..|+.. +..-....... |.+++..
T Consensus 114 L~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~~alp~Lv~LL~~p~sg~~~ 192 (584)
T 3l6x_A 114 LKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWER 192 (584)
T ss_dssp HHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHHHTHHHHHHHTHHHHHCCC-
T ss_pred HHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHhccHHHHHHHHhcccccccc
Confidence 631 0 0000112223457888888875 5788999999999999873 32211111111 2222210
Q ss_pred -------HhcCCCChHhHHHHHHHHHHHHHhCcc---cccCchHHHHHHHHHHhccCC-CCCCChhHHHHHHHHHHHHHH
Q 000194 649 -------LEQSSADNKCREESAKLLGCLIRNCER---LIRPYIAPIHKALVARLLEGT-GINANNGIISGVLVTVGDLAR 717 (1880)
Q Consensus 649 -------l~~~~~~~~~r~~a~~~L~~l~~~~~~---~~~py~~~il~~ll~~l~~~~-~~~~~~~v~~~~~~~l~~La~ 717 (1880)
+.+. .+...++.|+.+|..|+...+. .+... ..+++.|+..++... ....+....+.++.+|..|+.
T Consensus 193 ~~~~~~k~~~~-~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~-~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~ 270 (584)
T 3l6x_A 193 EPNEDCKPRHI-EWESVLTNTAGCLRNVSSERSEARRKLREC-DGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSY 270 (584)
T ss_dssp ---------CC-CCHHHHHHHHHHHHHHTSSCHHHHHHHHHS-TTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHT
T ss_pred ccccccccccc-ccHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhc
Confidence 1122 3568889999999999864322 22111 123344444443210 001245566777767766553
Q ss_pred hcCC-------------------------chhh-hHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcc---cccC
Q 000194 718 VGGF-------------------------GMRQ-YISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV---ITPY 768 (1880)
Q Consensus 718 ~~g~-------------------------~~~~-~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~---i~p~ 768 (1880)
.... .+.. +-...++.++..|++..+...+++|+++|..++...+.. +.-.
T Consensus 271 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~ 350 (584)
T 3l6x_A 271 QVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSA 350 (584)
T ss_dssp THHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred cccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHH
Confidence 2100 0100 123567888888876666789999999999998643211 0000
Q ss_pred CcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCC
Q 000194 769 NEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFA 848 (1880)
Q Consensus 769 ~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 848 (1880)
...-..++.|..+|... +..++..+..+|+.+.. ++.
T Consensus 351 v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~-~~~----------------------------------------- 387 (584)
T 3l6x_A 351 LRQEKALSAIADLLTNE-HERVVKAASGALRNLAV-DAR----------------------------------------- 387 (584)
T ss_dssp HTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHT-TCS-----------------------------------------
T ss_pred HHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhC-Chh-----------------------------------------
Confidence 11124688888888765 67899999999888752 111
Q ss_pred CCcccchHHHHHHHHHHhcCCCh-------hhhHHHHHHHHHHHHHHhCCCCCCC--cchhhHHHHHHHhcC--CcchhH
Q 000194 849 TSEDYYSTVAINSLMRILRDPSL-------ASYHQKVVGSLMFIFKSMGLGCVPY--LPKVLPDLFHTVRTC--DDYLKD 917 (1880)
Q Consensus 849 ~~~~~~~~~vi~~Ll~~L~d~s~-------~~~~~~~~~al~~i~~~~~~~~~~~--l~~iip~ll~~l~~~--~~~~~~ 917 (1880)
..+.+..-+++.|+..|...+. .+....++.++.+|+..- +..... =...+|.|.+.+++. .+...+
T Consensus 388 -~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~-~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k 465 (584)
T 3l6x_A 388 -NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAEN-LEAAKKLRETQGIEKLVLINKSGNRSEKEVR 465 (584)
T ss_dssp -CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHTCSSSCHHHHH
T ss_pred -HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCCChHHHH
Confidence 0011234577888888876521 123334555555554210 100111 135688888888775 445666
Q ss_pred HHHHHHHHHH
Q 000194 918 YITWKLGTLV 927 (1880)
Q Consensus 918 ~~~~~l~~lv 927 (1880)
.+...|..+.
T Consensus 466 ~Aa~vL~nl~ 475 (584)
T 3l6x_A 466 AAALVLQTIW 475 (584)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665554
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0012 Score=81.66 Aligned_cols=359 Identities=13% Similarity=0.081 Sum_probs=186.0
Q ss_pred CCCCHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHhhhChHH-HHHHHHHHHHHHHhhhcCCC------------hhh
Q 000194 19 GGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEA-FSRFMDQLYDRISGLLESND------------AAE 85 (1880)
Q Consensus 19 ~~~~~~~~~~l~~~l~s~~~~~~~aa~~l~~~v~~~~~~~~~~~-~~~~~~~l~~~i~~l~~s~~------------~~~ 85 (1880)
.+.--+.+..+..+|.+.+.+ + . .+.+. +. +-+++. ..-.-.-.++.+.+++++++ ...
T Consensus 27 ~~~~~~~~~~l~~~~~~~~~~-~-~---~~~ll-~~--~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~ 98 (458)
T 3nmz_A 27 LGTKVEMVYSLLSMLGTHDKD-D-M---SRTLL-AM--SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEA 98 (458)
T ss_dssp ------------------CCH-H-H---HHHHH-HH--HSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHH
T ss_pred cCchHHHHHHHHHHhcCCCHH-H-H---HHHHH-HH--HcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHH
Confidence 555667778888888765433 1 1 22222 11 122221 10011123455666776533 477
Q ss_pred hhhHHHHHhHhhccccCcchh-HH----------HHHHHHHHhhcccCC-ChH-----HHH-------HHHHHHHHHhhh
Q 000194 86 NLGALRAIDELIDVALGENAS-KV----------SKFSNYMRTVFEVKR-DRE-----ILV-------LASKVLGHLARA 141 (1880)
Q Consensus 86 r~~~i~ai~~Li~~~~~~~~~-~~----------~~~~~~L~~~l~~~~-d~~-----v~~-------~aa~~l~~L~~~ 141 (1880)
|.-|.-|+..++....+.... .. +.+.+.+.+++.... +.+ +.. .|.++|++++..
T Consensus 99 ~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~ 178 (458)
T 3nmz_A 99 RARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD 178 (458)
T ss_dssp HHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC
Confidence 888999999998876443221 11 111223333343210 111 433 788899988653
Q ss_pred CCCCchhHHH-HHHHHHHhhhcC----------CCcchhHHHHHHHHHHHHhhcCc--cchhchHHHHHHHHHHhcCCch
Q 000194 142 GGAMTADEVE-FQVKMALDWLRG----------DRVEYRRFAAVLILKEMAENAST--VFNVHVAEFVDAIWVALRDPTL 208 (1880)
Q Consensus 142 ~g~~~~~~v~-~~~~~~~~~l~~----------~~~~~~R~aA~~~l~~la~~~p~--~l~~~l~~i~~~i~~~l~D~~~ 208 (1880)
.. ....+++ ..++.++..|.. ..+...+..|+.+|..|+.+.+. .........+|.++..|+++++
T Consensus 179 ~e-~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~ 257 (458)
T 3nmz_A 179 EE-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE 257 (458)
T ss_dssp HH-HHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCH
T ss_pred HH-HHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCH
Confidence 10 0111111 134444444421 12234577888999999977542 1111245678999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhchhhHHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH---HHHHH
Q 000194 209 AVRERAVEALRACLRVIEKRETRWRVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY---REVAE 284 (1880)
Q Consensus 209 ~VR~aA~~al~~~~~~i~~r~~~~~~~~~-~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~---~~i~~ 284 (1880)
.|++.|+.||+.+... .+...+.... ...++.+..-|....+.+.+..++.+|..|...+.+. ...+ ...++
T Consensus 258 ~v~~~A~~aL~nLs~~---~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~n-k~~I~~~~Gal~ 333 (458)
T 3nmz_A 258 DLQQVIASVLRNLSWR---ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN-KADICAVDGALA 333 (458)
T ss_dssp HHHHHHHHHHHHHTSS---CCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHH-HHHHHHSTTHHH
T ss_pred HHHHHHHHHHHHHhcC---CCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHH-HHHHHHhcCcHH
Confidence 9999999999876421 0111222222 2345666665433334677888888888887633221 2222 23556
Q ss_pred HHHHHhhcchh----HHHHHHHHHhHhHhhh---ChhhHHHHHH-HHHHHHHHHhhcCCCC--cchHHHHHHHHHhhchh
Q 000194 285 IVLRYLEHRDR----LVRLSITSLLPRIAHF---LRDRFVTNYL-KICMNHILTVLRIPAE--RDSGFIALGEMAGALDG 354 (1880)
Q Consensus 285 ~ll~~~~~~~~----~Vr~~~~~~i~~la~~---~~~~f~~~yl-~~~~~~Ll~~L~~~~~--r~~a~~alg~la~~v~~ 354 (1880)
.+...+.+.+. .+++.++.+|..++.+ .++ ...... ...++.|+..|++.+. +..|..+|++++..-.+
T Consensus 334 ~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~-~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~ 412 (458)
T 3nmz_A 334 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED-HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK 412 (458)
T ss_dssp HHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHH-HHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHH
Confidence 66677766543 4888899999988863 332 122111 3568888888886653 67899999998743332
Q ss_pred hhhhhh--hHHHHHHHHhhcCCCCCCCchHHHHHHHHHHH
Q 000194 355 ELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1880)
Q Consensus 355 ~~~p~l--~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~ 392 (1880)
. ..++ ...++.+.+.+...+.+.+..+..++..|+..
T Consensus 413 ~-~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 413 D-QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp H-HHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred H-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 2 2222 23566666666544433345677777777654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.025 Score=67.85 Aligned_cols=324 Identities=13% Similarity=0.040 Sum_probs=191.9
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1880)
.+|....+.|.|..|+.+++...... ++.....-.+..+|..+|+.+.+...++..... .+ ....+..+
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGD------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 56778888999999999988776532 334567788999999999999998888754321 11 12334468
Q ss_pred HHhcCHHHHHHHHHHHHhccCCC-chhHHhHhh------------HhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhH
Q 000194 1365 EKLQRWDDALKAYTNKASQASNP-HIVLEATLG------------RMRCLAALARWEELNNLCKEYW--TPAEPAARLEM 1429 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~-~~~~~~~~g------------~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~ 1429 (1880)
.+.|+|++|+..|++.+...+.. .. .+.... +-.++...|+|+.-....+... .+... ..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~ 156 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEE-KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDA----EL 156 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccCh-HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch----HH
Confidence 89999999999999988654310 11 122222 2477888888877666655422 11111 22
Q ss_pred HHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHH-HHHHHHHHhcChhhhHHHHHHHHHHhHhh
Q 000194 1430 APMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTF-FRAVLLVRRGKVLESYERAYSNMVRVQQL 1508 (1880)
Q Consensus 1430 ~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f-~~a~~~i~~~~~~esy~ray~~l~~lq~L 1508 (1880)
....+.+.+.+|+|+.-..+....-... ......+ ..+......+
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------~~~~~~~~~la~~~~~~~------------------- 202 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLK---------------SDNTEAFYKISTLYYQLG------------------- 202 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC---------------SCCHHHHHHHHHHHHHHT-------------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcC-------------------
Confidence 2345567788888887766555332110 0000011 1111111111
Q ss_pred hhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHH
Q 000194 1509 SELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQA 1588 (1880)
Q Consensus 1509 ~ELeE~i~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a 1588 (1880)
+.++.+++ +++=+...+.+...|...-.+. .....+..+....+.|+++.|
T Consensus 203 -~~~~A~~~--------------------~~~a~~~~~~~~~~~~~~~~~~--------~~~~~~~~a~~~~~~~~~~~A 253 (359)
T 3ieg_A 203 -DHELSLSE--------------------VRECLKLDQDHKRCFAHYKQVK--------KLNKLIESAEELIRDGRYTDA 253 (359)
T ss_dssp -CHHHHHHH--------------------HHHHHHHCTTCHHHHHHHHHHH--------HHHHHHHHHHHHHHTTCHHHH
T ss_pred -CHHHHHHH--------------------HHHHHhhCccchHHHHHHHHHH--------HHHHHHHHHHHHHHcCCHHHH
Confidence 11111111 1111111122222332222221 245566678889999999999
Q ss_pred HHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcch
Q 000194 1589 RSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNV 1668 (1880)
Q Consensus 1589 ~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1668 (1880)
...+.++....|... . .........+..+...|+ ..+|+..++..+.....
T Consensus 254 ~~~~~~~~~~~~~~~-~-----~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~-------------------- 304 (359)
T 3ieg_A 254 TSKYESVMKTEPSVA-E-----YTVRSKERICHCFSKDEK---PVEAIRICSEVLQMEPD-------------------- 304 (359)
T ss_dssp HHHHHHHHHHCCSSH-H-----HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT--------------------
T ss_pred HHHHHHHHhcCCCch-H-----HHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCcc--------------------
Confidence 999999887655310 0 001234456788888885 68999999987753110
Q ss_pred hhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000194 1669 PLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1669 ~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1880)
...++..+|...... ...++....|+++++++|+...+|..++.....
T Consensus 305 --~~~~~~~~~~~~~~~------g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 305 --NVNALKDRAEAYLIE------EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp --CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 123444555554443 246789999999999999999999988877554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.012 Score=72.20 Aligned_cols=334 Identities=14% Similarity=0.126 Sum_probs=192.1
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1880)
.++.+..+++.+.+|..+.+...... +......-.|..+|.+.|+.+.+...++.+... ++ .......+
T Consensus 38 ~l~~~~~~~~~~~~a~~~~~~a~~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 111 (388)
T 1w3b_A 38 LLSSIHFQCRRLDRSAHFSTLAIKQN------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 56777788889999998887766432 344567888999999999999999888754321 11 11233458
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhHHHHHHHHHHHcCC
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW--TPAEPAARLEMAPMAANAAWNMGE 1442 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~~~~~a~aaw~l~~ 1442 (1880)
.+.|+|++|+..|++.+...++. ......+-.++..+|+|+.-....+... .+..... -...+.+....|+
T Consensus 112 ~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~l~~~~~~~g~ 184 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQYNPDL---YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA----WSNLGCVFNAQGE 184 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHHCTTC---THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHTTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHcCC
Confidence 89999999999999988754443 3445667788999999987766554321 1111111 1123456677888
Q ss_pred hhhHHHHHhhcCC-CCcchhhccccccccCCCCCchHHH-HHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcC
Q 000194 1443 WDQMAEYVSRLDD-GDESKLRGLGNTAANGDGSSNGTFF-RAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTL 1520 (1880)
Q Consensus 1443 Wd~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~f~-~a~~~i~~~~~~esy~ray~~l~~lq~L~ELeE~i~~~~~ 1520 (1880)
++.-..+....-. ++ .....++ .+......+. |..+.. .++++++. .
T Consensus 185 ~~~A~~~~~~al~~~p----------------~~~~~~~~lg~~~~~~~~----~~~A~~---------~~~~al~~--~ 233 (388)
T 1w3b_A 185 IWLAIHHFEKAVTLDP----------------NFLDAYINLGNVLKEARI----FDRAVA---------AYLRALSL--S 233 (388)
T ss_dssp HHHHHHHHHHHHHHCT----------------TCHHHHHHHHHHHHTTTC----TTHHHH---------HHHHHHHH--C
T ss_pred HHHHHHHHHHHHhcCC----------------CcHHHHHHHHHHHHHcCC----HHHHHH---------HHHHHHhh--C
Confidence 8776554443210 00 0000110 0111111111 111111 11112111 1
Q ss_pred CCCCCchhhHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHhh-cCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 000194 1521 PVGNPVAEGRRAIIRNMWTER--IQGTKRNVEVWQALLAVRALV-LPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQ 1597 (1880)
Q Consensus 1521 ~~~~~~~~~~~~~l~~~W~~R--l~~~~~~~~~w~~iL~~R~~v-l~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~ 1597 (1880)
|.. . ..|... ......+++.=.. ..+..+ +.| ++...|..++.+..+.|+++.|...+.++..
T Consensus 234 p~~----~-------~~~~~l~~~~~~~g~~~~A~~--~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 234 PNH----A-------VVHGNLACVYYEQGLIDLAID--TYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp TTC----H-------HHHHHHHHHHHHTTCHHHHHH--HHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cCC----H-------HHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 110 0 011110 0001112211111 111111 223 4467899999999999999999999998887
Q ss_pred CCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHH
Q 000194 1598 YDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLK 1677 (1880)
Q Consensus 1598 ~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~ 1677 (1880)
.+|. .+......+.++...|+ ..+|+..+++.+... + -.+..+..
T Consensus 300 ~~p~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~---p-------------------~~~~~~~~ 344 (388)
T 1w3b_A 300 LCPT----------HADSLNNLANIKREQGN---IEEAVRLYRKALEVF---P-------------------EFAAAHSN 344 (388)
T ss_dssp HCTT----------CHHHHHHHHHHHHTTTC---HHHHHHHHHHHTTSC---T-------------------TCHHHHHH
T ss_pred hCcc----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC---C-------------------CcHHHHHH
Confidence 6542 35666777777777784 678988888754310 0 01223444
Q ss_pred HhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000194 1678 LGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1880)
Q Consensus 1678 lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1880)
+|.-.... ...++....|+++++.+|+...+|..+|...
T Consensus 345 l~~~~~~~------g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 345 LASVLQQQ------GKLQEALMHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHHHHHTT------TCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHc------CCHHHHHHHHHHHHhhCCCCHHHHHhHHHHH
Confidence 44444332 2357888999999999999999999888754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.044 Score=74.32 Aligned_cols=163 Identities=14% Similarity=0.153 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHH
Q 000194 1694 IPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLL 1773 (1880)
Q Consensus 1694 ~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlL 1773 (1880)
.++.+..|+.++.+++.+.-.|..+|....+ | ..+-+..+++.|-..+...+--.-+ ...+--..+.
T Consensus 1296 feEAI~LlE~aL~LeraH~gmftELaiLyaK----y--------~peklmEhlk~f~~rini~k~~r~~-e~~~lW~elv 1362 (1630)
T 1xi4_A 1296 FEELITMLEAALGLERAHMGMFTELAILYSK----F--------KPQKMREHLELFWSRVNIPKVLRAA-EQAHLWAELV 1362 (1630)
T ss_pred HHHHHHHHHHHhccChhHhHHHHHHHHHHHh----C--------CHHHHHHHHHHHHHhcccchHhHHH-HHHHHHHHHH
Confidence 4677777777777777777777666655443 1 1234455566666555431000000 1234456777
Q ss_pred HHHHhcCCcHHHHHHHHhccc-CCChhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCchhhHHHHHHHhcCCcHH
Q 000194 1774 TLWFNHGATEEVQIALQKGFA-HVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNL 1852 (1880)
Q Consensus 1774 tLwf~~g~~~~v~~~~~~~~~-~ip~~~wl~~ipQLiaRi~~~~~~v~~~l~~lL~~i~~~hPqa~ly~L~~~~kS~~~~ 1852 (1880)
.|...+|+......+|.++.. .-....|-. .+.... + -.+....+.=....||..+-+-|.++..--+..
T Consensus 1363 ~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~----~i~kv~--n---~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~ 1433 (1630)
T 1xi4_A 1363 FLYDKYEEYDNAIITMMNHPTDAWKEGQFKD----IITKVA--N---VELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHT 1433 (1630)
T ss_pred HHHHhcccHHHHHHHHHhccHhhhhhHHHHH----Hhcccc--c---HHHHHHHHHHHHhhChHHHHHHHHHhhhcCChH
Confidence 777777776654444444421 111222222 222222 2 245555555556899999888888876544444
Q ss_pred HHH----------HHHHHHHHHhhcccccccccccc
Q 000194 1853 RRA----------AAQEVVDKVRQHSGVLVDQSCYT 1878 (1880)
Q Consensus 1853 R~~----------~a~~Il~~~~~~~~~lv~~a~~~ 1878 (1880)
|.- .++.-+..+..++..-|++|+-+
T Consensus 1434 R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~e 1469 (1630)
T 1xi4_A 1434 RAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNN 1469 (1630)
T ss_pred HHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHH
Confidence 431 45666666667777888887654
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00094 Score=75.00 Aligned_cols=175 Identities=17% Similarity=0.173 Sum_probs=122.4
Q ss_pred CChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc---CCCcchhHHHHHHHHHHHHhhcC---ccchhc-hHHH
Q 000194 123 RDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR---GDRVEYRRFAAVLILKEMAENAS---TVFNVH-VAEF 195 (1880)
Q Consensus 123 ~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~---~~~~~~~R~aA~~~l~~la~~~p---~~l~~~-l~~i 195 (1880)
.|..-...|.+.|-..... .++-+...+.-++.|+. -+++...=..++.+|..+..... ..+..| ...+
T Consensus 58 ~d~k~~~~ale~L~~~l~~----~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~ 133 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADT----SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAF 133 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHH----CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhh----ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3565555555555544432 23333344555678874 34555555677888877765432 235555 5889
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhh
Q 000194 196 VDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFM 275 (1880)
Q Consensus 196 ~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~ 275 (1880)
+|.++.-++|++..||+++...+..+..+.. ...+++.+..|+.+.+ |++|.+++..++.++...|-.
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~----------~~~v~~~l~~g~ksKN-~R~R~e~l~~l~~li~~~G~~- 201 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG----------PLKMTPMLLDALKSKN-ARQRSECLLVIEYYITNAGIS- 201 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC----------HHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHCSG-
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCC----------HHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHhcCCC-
Confidence 9999999999999999999998877655422 2457777888998875 999999999999999855432
Q ss_pred HHHHHHHH---HHHHHHhhcchhHHHHHHHHHhHhHhhhChhhH
Q 000194 276 MSRYREVA---EIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRF 316 (1880)
Q Consensus 276 ~~~~~~i~---~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f 316 (1880)
+ ...+ ..+..++++++..||.+|++++..+-...++.+
T Consensus 202 -~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 202 -P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp -G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred -c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 1 2234 667788899999999999999987766555554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.087 Score=65.67 Aligned_cols=327 Identities=12% Similarity=0.046 Sum_probs=184.1
Q ss_pred HHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHH
Q 000194 1289 RLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESW 1363 (1880)
Q Consensus 1289 ~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~ 1363 (1880)
..++....++|.|..|+.+++...... ++.....-.+..+|..+|+.+.+.-.++.+... .+ ....+..
T Consensus 30 ~~~~~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 30 LELGKKLLAAGQLADALSQFHAAVDGD------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 356777888899999998887765432 334567778899999999999998888754321 11 1123445
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhH------------hhHhHHHHHhhCHHHHHHHHhhhcC--CCChHHHHhH
Q 000194 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEAT------------LGRMRCLAALARWEELNNLCKEYWT--PAEPAARLEM 1429 (1880)
Q Consensus 1364 ~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~------------~g~m~cl~~Lg~w~~l~~~~~~~~~--~~~~~~~~~~ 1429 (1880)
|.+.|++++|+..|++.+...++.....+.. ...-.++...|+|+.-....+.... +... ..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~ 179 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA----EL 179 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HH
Confidence 8899999999999998876433321000111 1224456677777665555443211 1111 11
Q ss_pred HHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHH-HhHhh
Q 000194 1430 APMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMV-RVQQL 1508 (1880)
Q Consensus 1430 ~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~-~lq~L 1508 (1880)
....+.+...+|+|+.-..+....- ...... ..++..+. -....
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~------------------------------~~~~~~-----~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAAS------------------------------KLKNDN-----TEAFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHH------------------------------HHHCSC-----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH------------------------------HhCCCC-----HHHHHHHHHHHHHc
Confidence 2233456666676666544333221 000000 00000000 00011
Q ss_pred hhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHH
Q 000194 1509 SELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQA 1588 (1880)
Q Consensus 1509 ~ELeE~i~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a 1588 (1880)
.+.++.+.+ +++=+...+.+...|..+-.++ ....++..+..+.+.|+++.|
T Consensus 225 g~~~~A~~~--------------------~~~~~~~~p~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~A 276 (450)
T 2y4t_A 225 GDHELSLSE--------------------VRECLKLDQDHKRCFAHYKQVK--------KLNKLIESAEELIRDGRYTDA 276 (450)
T ss_dssp TCHHHHHHH--------------------HHHHHHHCTTCHHHHHHHHHHH--------HHHHHHHHHHHHHHHTCHHHH
T ss_pred CCHHHHHHH--------------------HHHHHHhCCChHHHHHHHHHHH--------HHHHHHHHHHHHHHcCCHHHH
Confidence 111222111 1111111222333333221111 134567779999999999999
Q ss_pred HHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcch
Q 000194 1589 RSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNV 1668 (1880)
Q Consensus 1589 ~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1668 (1880)
...+.++....|.. +. .........+..++..|+ ..+|+..++..+.... .
T Consensus 277 ~~~~~~~l~~~p~~-~~-----~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~p------------------~-- 327 (450)
T 2y4t_A 277 TSKYESVMKTEPSI-AE-----YTVRSKERICHCFSKDEK---PVEAIRVCSEVLQMEP------------------D-- 327 (450)
T ss_dssp HHHHHHHHHHCCSS-HH-----HHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHCT------------------T--
T ss_pred HHHHHHHHhcCCcc-hH-----HHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCc------------------c--
Confidence 99999988765431 00 002355666788888884 6899999988764311 0
Q ss_pred hhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000194 1669 PLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV 1725 (1880)
Q Consensus 1669 ~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~ 1725 (1880)
.+.++..+|.-.... ...++....|+++++++|+...+|..++......
T Consensus 328 --~~~~~~~l~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 328 --NVNALKDRAEAYLIE------EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376 (450)
T ss_dssp --CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHh
Confidence 123344445444433 3467889999999999999999999988765543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.027 Score=72.34 Aligned_cols=174 Identities=13% Similarity=0.040 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
...|...+.+..+.|+++.|...+.++...+|. .+.+.+..+.+++..|+ ..+|+..+++.+.....
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~ 342 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE----------YPPTYYHRGQMYFILQD---YKNAKEDFQKAQSLNPE 342 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC----------CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCC
Confidence 789999999999999999999999998876552 46788888999999995 68899999987653211
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1880)
. ..++..+|...... ...++....|+++.+.+|+...+|..+|..+...
T Consensus 343 ------------------~----~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 391 (537)
T 3fp2_A 343 ------------------N----VYPYIQLACLLYKQ------GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR--- 391 (537)
T ss_dssp ------------------C----SHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT---
T ss_pred ------------------C----HHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh---
Confidence 0 12234444444333 2357888999999999999999999998776541
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhc----------CCcHHHHHHHHhcccCCC
Q 000194 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNH----------GATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~----------g~~~~v~~~~~~~~~~ip 1797 (1880)
.-...|+..|-+++...+........+......-.++... |...+....+++.+..-|
T Consensus 392 -----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 459 (537)
T 3fp2_A 392 -----------GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459 (537)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred -----------CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC
Confidence 1234678888888877543222222222233444555555 665565566666554434
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.047 Score=68.13 Aligned_cols=139 Identities=13% Similarity=0.072 Sum_probs=104.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHH------------HHHHHHHHhcCCcchHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVM------------YAYLKYQWSLGEDLKRKE 1634 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~------------~~~ak~lw~~g~~~~~~~ 1634 (1880)
.+...|..++.+..+.|+++.|...+.++.+..|. .+... +..+..+...|+ ..+
T Consensus 209 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~ 275 (450)
T 2y4t_A 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD----------HKRCFAHYKQVKKLNKLIESAEELIRDGR---YTD 275 (450)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHHHHHHHHHHHHHTC---HHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHHHHHHHHHHHHHHHcCC---HHH
Confidence 45789999999999999999999999998876553 12222 223777778884 688
Q ss_pred HHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHH
Q 000194 1635 AFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKA 1714 (1880)
Q Consensus 1635 Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~ 1714 (1880)
|+..+++.+.... .+......++..+|...... ...++.+..|+++++.+|+...+
T Consensus 276 A~~~~~~~l~~~p------------------~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~a~~~~p~~~~~ 331 (450)
T 2y4t_A 276 ATSKYESVMKTEP------------------SIAEYTVRSKERICHCFSKD------EKPVEAIRVCSEVLQMEPDNVNA 331 (450)
T ss_dssp HHHHHHHHHHHCC------------------SSHHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCC------------------cchHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCcccHHH
Confidence 9999988765311 12344566777777776654 45789999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1715 WHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1715 w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
|...|..+... .-...|+..|-+++.+.
T Consensus 332 ~~~l~~~~~~~--------------~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 332 LKDRAEAYLIE--------------EMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHHHHHT--------------TCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHh--------------cCHHHHHHHHHHHHHhC
Confidence 99999887541 12347888999988875
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0013 Score=73.88 Aligned_cols=186 Identities=10% Similarity=-0.007 Sum_probs=137.2
Q ss_pred CcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 000194 165 RVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEAT 244 (1880)
Q Consensus 165 ~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~ 244 (1880)
+++..|.+|+..|....+..|+.+...+.-++.-+.-.+.|+++.|-..+.+.+..++..+.+++......-...++|.+
T Consensus 58 ~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~L 137 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYL 137 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 56688999999998888777777666777677755545669999999999999999888877655445555567889999
Q ss_pred HhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHH
Q 000194 245 QDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKIC 324 (1880)
Q Consensus 245 ~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~ 324 (1880)
...++++. ..+|.++-.++..+....+ ...+.+.++..+.++|..+|..++..+..+-.-.+..+ ...
T Consensus 138 veKlGd~k-~~vR~~~r~il~~l~~v~~------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~-----~~~ 205 (266)
T 2of3_A 138 LLKTGEAK-DNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP-----LKS 205 (266)
T ss_dssp HHGGGCSS-HHHHHHHHHHHHHHHHHHC------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG-----GGG
T ss_pred HHHhCCCh-HHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc-----ccc
Confidence 99999885 4667777777766654221 12355667777899999999999998887653222222 223
Q ss_pred H---HHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhH
Q 000194 325 M---NHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPT 362 (1880)
Q Consensus 325 ~---~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~ 362 (1880)
+ +.+...+.+.+ .|.+|+.|+..+-..+|+.+..|++.
T Consensus 206 l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~ 248 (266)
T 2of3_A 206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGR 248 (266)
T ss_dssp GCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCC
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 4 66777776543 69999999999999999987776643
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00095 Score=77.71 Aligned_cols=193 Identities=13% Similarity=0.064 Sum_probs=121.9
Q ss_pred HhhhcCCChhhhhhHHHHHhHhhccccCcch-----hHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhH
Q 000194 75 SGLLESNDAAENLGALRAIDELIDVALGENA-----SKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADE 149 (1880)
Q Consensus 75 ~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~-----~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~ 149 (1880)
.+-+.|++|..|+.|+..+..++........ ....++...+...+. +.+..|...|.+++..++...+...
T Consensus 15 ~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~-DsN~~v~~~al~~l~~~~~~~~~~~--- 90 (278)
T 4ffb_C 15 EERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT-DSNVVAQEQAIVALNSLIDAFASSS--- 90 (278)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCC------
T ss_pred HHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhhhh---
Confidence 3557899999999999998888754211100 001112233444442 3345555555555555544321100
Q ss_pred HHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHhhh
Q 000194 150 VEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWV-ALRDPTLAVRERAVEALRACLRVIEKR 228 (1880)
Q Consensus 150 v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~-~l~D~~~~VR~aA~~al~~~~~~i~~r 228 (1880)
.....+..++..+++.++. ++.|+++.+|..|.+++-.++....
T Consensus 91 ---------------------------------~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-- 135 (278)
T 4ffb_C 91 ---------------------------------LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-- 135 (278)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS--
T ss_pred ---------------------------------cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC--
Confidence 0011233566777887775 6899999999999988766654221
Q ss_pred chhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh-h--hHHHHHHHHHHHHHHhhcchhHHHHHHHHHh
Q 000194 229 ETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE-F--MMSRYREVAEIVLRYLEHRDRLVRLSITSLL 305 (1880)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~-~--~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i 305 (1880)
....+++.+..++.+.+ +.++.+++.+|..++...|. . ..+.+..++..+...++++++.||.++..++
T Consensus 136 -------~~~~~~e~l~~~l~~Kn-pkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 136 -------SITQSVELVIPFFEKKL-PKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLI 207 (278)
T ss_dssp -------SSHHHHHHHGGGGGCSC-HHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 11345677777887765 78899999999999885432 1 3345667777888889999999999999999
Q ss_pred HhHhhhChh
Q 000194 306 PRIAHFLRD 314 (1880)
Q Consensus 306 ~~la~~~~~ 314 (1880)
+.+-.+.++
T Consensus 208 ~~ly~~~G~ 216 (278)
T 4ffb_C 208 VEIYKVTGN 216 (278)
T ss_dssp HHHHTC---
T ss_pred HHHHHHhCc
Confidence 988766553
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.013 Score=69.64 Aligned_cols=124 Identities=10% Similarity=0.018 Sum_probs=87.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|..++.+..+.|+++.|...+.++....+..... ......+.+....+.++...|+ ..+|+..+++.+....
T Consensus 192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~ 267 (330)
T 3hym_B 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE-VTVDKWEPLLNNLGHVCRKLKK---YAEALDYHRQALVLIP 267 (330)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS-CTTTTCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc-ccccHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhhCc
Confidence 46778888999999999999999998887654322110 0011235778888999999995 6899999998775321
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
.. ..-...++.++...|+| ++....|+++.+++|+...+|..+|....
T Consensus 268 ~~---------------~~~~~~la~~~~~~g~~-------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 268 QN---------------ASTYSAIGYIHSLMGNF-------------ENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp TC---------------SHHHHHHHHHHHHHTCH-------------HHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred cc---------------hHHHHHHHHHHHHhccH-------------HHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 10 11122355666555554 67889999999999999999999887643
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.033 Score=71.46 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=100.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|...+.+..+.|+++.|...+.++....|. .+.+....+.++...|+ ..+|+..++..+....
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT----------LPEVPTFFAEILTDRGD---FDTAIKQYDIAKRLEE 409 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHcCC
Confidence 4578889999999999999999999998876542 36677788899988985 6889999998765432
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHH----------hhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKL----------GSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHS 1717 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~l----------g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~ 1717 (1880)
...... ......-.++.++... |+| ++....|+++++.+|+...+|..
T Consensus 410 ~~~~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~A~~~~~~a~~~~p~~~~~~~~ 467 (537)
T 3fp2_A 410 VQEKIH---------VGIGPLIGKATILARQSSQDPTQLDEEKF-------------NAAIKLLTKACELDPRSEQAKIG 467 (537)
T ss_dssp HCSSCS---------STTHHHHHHHHHHHHHHTC----CCHHHH-------------HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchhhH---------HHHHHHHHHHHHHHHHhhccchhhhHhHH-------------HHHHHHHHHHHHhCCCCHHHHHH
Confidence 111000 0000012235666666 554 67889999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1718 WALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1718 wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
+|....+. + -...|++.|-+++.+.
T Consensus 468 l~~~~~~~-------g-------~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 468 LAQLKLQM-------E-------KIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHT-------T-------CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh-------c-------cHHHHHHHHHHHHHhC
Confidence 98876541 1 2347888999998875
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.09 Score=66.75 Aligned_cols=141 Identities=12% Similarity=0.089 Sum_probs=100.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|...+.+..+.|+++.|...+.++....|. .+.+.+..+.++...|+ ..+|+..++..+...
T Consensus 336 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE----------APEVPNFFAEILTDKND---FDKALKQYDLAIELE 402 (514)
T ss_dssp SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT----------CSHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc----------CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhh
Confidence 35678999999999999999999999888776542 35677788888888885 678999998876543
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhh---cCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRA---LPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~---~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
.... .....+..+..+|..... . ...++....|+++++.+|+...+|...|....
T Consensus 403 ~~~~----------------~~~~~~~~~~~l~~~~~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 460 (514)
T 2gw1_A 403 NKLD----------------GIYVGIAPLVGKATLLTRNPTV------ENFIEATNLLEKASKLDPRSEQAKIGLAQMKL 460 (514)
T ss_dssp HTSS----------------SCSSCSHHHHHHHHHHHTSCCT------THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hccc----------------hHHHHHHHHHHHHHHHhhhhhc------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 2110 000112234444444433 2 23578899999999999999999999887755
Q ss_pred HHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1724 AVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1724 ~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
.. + -...|+..|-+++.+.
T Consensus 461 ~~-------g-------~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 461 QQ-------E-------DIDEAITLFEESADLA 479 (514)
T ss_dssp HT-------T-------CHHHHHHHHHHHHHHC
T ss_pred Hh-------c-------CHHHHHHHHHHHHHhc
Confidence 31 1 2347888888888875
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.18 Score=60.10 Aligned_cols=139 Identities=13% Similarity=0.074 Sum_probs=102.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHH------------HHHHHHHHHhcCCcchHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQV------------MYAYLKYQWSLGEDLKRKE 1634 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v------------~~~~ak~lw~~g~~~~~~~ 1634 (1880)
.+...|...+.+..+.|+++.|...+.++....|.. +.. .+..+..+...|+ ..+
T Consensus 186 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~ 252 (359)
T 3ieg_A 186 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH----------KRCFAHYKQVKKLNKLIESAEELIRDGR---YTD 252 (359)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc----------hHHHHHHHHHHHHHHHHHHHHHHHHcCC---HHH
Confidence 557899999999999999999999999988765531 222 1233566777774 689
Q ss_pred HHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHH
Q 000194 1635 AFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKA 1714 (1880)
Q Consensus 1635 Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~ 1714 (1880)
|+..+++.+.... .+.....+.+..+|...... ...++.+..|..+++.+|+...+
T Consensus 253 A~~~~~~~~~~~~------------------~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~ 308 (359)
T 3ieg_A 253 ATSKYESVMKTEP------------------SVAEYTVRSKERICHCFSKD------EKPVEAIRICSEVLQMEPDNVNA 308 (359)
T ss_dssp HHHHHHHHHHHCC------------------SSHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCC------------------CchHHHHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCcccHHH
Confidence 9999988765321 12334556666677666554 35789999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1715 WHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1715 w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
|+..|...... .-...|+..|-+++.+.
T Consensus 309 ~~~~~~~~~~~--------------g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 309 LKDRAEAYLIE--------------EMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHT--------------TCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHc--------------CCHHHHHHHHHHHHhcC
Confidence 99999876541 12357899999998875
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.27 Score=66.52 Aligned_cols=187 Identities=12% Similarity=0.059 Sum_probs=105.3
Q ss_pred hHHHHHHHhCCCCH-hHHHH-HHHHHHhhhcCCcccccHHHHHHHHHHHHHHhc-CCCChHhHHHHHHHHHHHHH-hCcc
Q 000194 600 CLSAIFAALNDEDF-DVREY-AISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ-SSADNKCREESAKLLGCLIR-NCER 675 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~-~VR~~-a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~-~~~~~~~r~~a~~~L~~l~~-~~~~ 675 (1880)
+++.|+...++++. ++... |..++..++.... .+.....++..+..+.. + .++ .|..++..+..+.- +.--
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~---~~~~~~~~l~~l~~~~~~s-~sW-~R~~~L~~lq~~~f~n~f~ 835 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPI---RKNHVAAIVDYVCSSNVAL-SSN-QTKLQLAFIQHFLSAELLQ 835 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCC---CHHHHHHHHHHSSCTTTTS-CSS-SHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHhcC-CcH-HHHHHHHHHHHHHHHHHHH
Confidence 45555555555543 55555 5666766664331 22222222233332222 3 567 88888887766663 3322
Q ss_pred cccCchHHHHHHHHHHhccCCCCCCC-hhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhc-----------CCc
Q 000194 676 LIRPYIAPIHKALVARLLEGTGINAN-NGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD-----------GAA 743 (1880)
Q Consensus 676 ~~~py~~~il~~ll~~l~~~~~~~~~-~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d-----------~~~ 743 (1880)
....-...|.+.++..|.|+ . .+|++.+..+|+-+....+. ......++..+.+.+.. ..+
T Consensus 836 l~~~~~~~i~~~v~~~L~D~-----q~~EVRe~Aa~tLsgll~c~~~--~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~ 908 (997)
T 1vsy_5 836 LTEEEKNKILEFVVSNLYNE-----QFVEVRVRAASILSDIVHNWKE--EQPLLSLIERFAKGLDVNKYTSKERQKLSKT 908 (997)
T ss_dssp SCTTHHHHTHHHHTTTTTCS-----SCHHHHHHHHHHHHHHHHSCCS--HHHHHHHHHHHTTSSTTTSSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHHHHHHcCCc--hhhHHHHHHHHHHHHhhcccccccccccchH
Confidence 22233356778888888875 7 88999999999988765412 01111233333322211 011
Q ss_pred hhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000194 744 VTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGI 800 (1880)
Q Consensus 744 ~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~ 800 (1880)
...|..|+.+||.++....+.+-|..-.|+++..|.+.+.++ ..++..+=++++.
T Consensus 909 ~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~--~~i~~tvk~tlse 963 (997)
T 1vsy_5 909 DIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTS--GMTGNAAKNTISE 963 (997)
T ss_dssp CHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSC--SSHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCC--CchHHHHHHHHHH
Confidence 247889999999999998776422333466666555555442 3477777677665
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0063 Score=72.82 Aligned_cols=229 Identities=10% Similarity=0.044 Sum_probs=145.5
Q ss_pred hhhhhhHHHHHhHhhccccCcchhHHH---HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCc-hhHHH-HHHHHH
Q 000194 83 AAENLGALRAIDELIDVALGENASKVS---KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMT-ADEVE-FQVKMA 157 (1880)
Q Consensus 83 ~~~r~~~i~ai~~Li~~~~~~~~~~~~---~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~-~~~v~-~~~~~~ 157 (1880)
...|..|..++..|.... .+....+. -+.+.|..++. +++.++...|+++|..|+....... ..+++ .-++.+
T Consensus 98 ~~~q~~Aa~aL~nLa~~~-~~~k~~i~~~~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGD-VANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHTSSC-HHHHHHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCcHHHHHHHHC-CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 445777888888886432 11222231 23566777775 6789999999999999986311111 12222 246666
Q ss_pred HhhhcCCCcchhHHHHHHHHHHHHhhcCccchhc--hHHHHHHHHHHhcCCch----hHHHHHHHHHHHHHHHHhhhchh
Q 000194 158 LDWLRGDRVEYRRFAAVLILKEMAENASTVFNVH--VAEFVDAIWVALRDPTL----AVRERAVEALRACLRVIEKRETR 231 (1880)
Q Consensus 158 ~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~--l~~i~~~i~~~l~D~~~----~VR~aA~~al~~~~~~i~~r~~~ 231 (1880)
++.|....+...+..|+.+|..|+.+++..=... ....++.+...|+++++ .|++.|+.+|+.+...+...+ .
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~-~ 254 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE-D 254 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCH-H
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCH-H
Confidence 7665433445566778888888987554321111 24678888899987665 489999999988765432111 1
Q ss_pred hHHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH--HHHHHHHHHhhcchhHHHHHHHHHhHhH
Q 000194 232 WRVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR--EVAEIVLRYLEHRDRLVRLSITSLLPRI 308 (1880)
Q Consensus 232 ~~~~~~-~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~--~i~~~ll~~~~~~~~~Vr~~~~~~i~~l 308 (1880)
.+.... ...++.+..-|.+++ .+++..|+.+|..|.....+.. ..+. ..++.+..+++++++.+|+.++.+|..|
T Consensus 255 ~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~~-~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL 332 (354)
T 3nmw_A 255 HRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKDQ-EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332 (354)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSSCHHHH-HHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCC-hHHHHHHHHHHHHHhCCCHHHH-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 222221 235677777777664 5778888888888764322221 1221 2466777778889999999999999999
Q ss_pred hhhChhhH
Q 000194 309 AHFLRDRF 316 (1880)
Q Consensus 309 a~~~~~~f 316 (1880)
+...+...
T Consensus 333 ~~~~~~~~ 340 (354)
T 3nmw_A 333 MANRPAKY 340 (354)
T ss_dssp HTTCCGGG
T ss_pred HcCCHHHH
Confidence 98877643
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.077 Score=62.67 Aligned_cols=266 Identities=14% Similarity=0.050 Sum_probs=160.6
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcC--CCChHHHHhHHHHHHHHHHHc
Q 000194 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWT--PAEPAARLEMAPMAANAAWNM 1440 (1880)
Q Consensus 1363 ~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~--~~~~~~~~~~~~~~a~aaw~l 1440 (1880)
.+-..|+|++|+..|++.+...++. ......+..|+..+|+|+......+.... +.... .....+.+.+..
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 103 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKDPFH---ASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV----SWFAVGCYYLMV 103 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC---TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH----HHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH----HHHHHHHHHHHh
Confidence 3556699999999999988754433 23456688999999999888766654321 11111 122345677778
Q ss_pred C-ChhhHHHHHhhc-CCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhh
Q 000194 1441 G-EWDQMAEYVSRL-DDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYC 1518 (1880)
Q Consensus 1441 ~-~Wd~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~ELeE~i~~~ 1518 (1880)
| +|+.-..+.... ...+ .. ...+..+-.+ .....+.++.+++
T Consensus 104 ~~~~~~A~~~~~~a~~~~~----------------~~-~~~~~~l~~~------------------~~~~~~~~~A~~~- 147 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLEK----------------TY-GPAWIAYGHS------------------FAVESEHDQAMAA- 147 (330)
T ss_dssp CSCHHHHHHHHHHHHTTCT----------------TC-THHHHHHHHH------------------HHHHTCHHHHHHH-
T ss_pred hhhHHHHHHHHHHHHHhCC----------------cc-HHHHHHHHHH------------------HHHccCHHHHHHH-
Confidence 8 787665554432 1110 00 1111110000 0011112222211
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 000194 1519 TLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQY 1598 (1880)
Q Consensus 1519 ~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~ 1598 (1880)
+. +.+.. .| .+...|...+.+..+.|+++.|...+.++...
T Consensus 148 -------------------~~--------------~a~~~-----~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 188 (330)
T 3hym_B 148 -------------------YF--------------TAAQL-----MK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188 (330)
T ss_dssp -------------------HH--------------HHHHH-----TT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -------------------HH--------------HHHHh-----cc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 11 00000 01 23456777888999999999999999999877
Q ss_pred CCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHH
Q 000194 1599 DPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKL 1678 (1880)
Q Consensus 1599 ~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~l 1678 (1880)
.|. .+.+....+.++...|+ ..+|+..+++.+......... ......+.++..+
T Consensus 189 ~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~-------------~~~~~~~~~~~~l 242 (330)
T 3hym_B 189 APE----------DPFVMHEVGVVAFQNGE---WKTAEKWFLDALEKIKAIGNE-------------VTVDKWEPLLNNL 242 (330)
T ss_dssp CTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTTTSCS-------------CTTTTCCHHHHHH
T ss_pred CCC----------ChHHHHHHHHHHHHccc---HHHHHHHHHHHHHHhhhcccc-------------ccccHHHHHHHHH
Confidence 552 46778888999999995 689999999877654321110 0001112334445
Q ss_pred hhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1679 GSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1679 g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
|...... ...++....|+++++.+|+...+|..+|..+...= -...|++.|-+++.+.
T Consensus 243 a~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--------------~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 243 GHVCRKL------KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG--------------NFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHT------TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT--------------CHHHHHHHHHTTTTTC
T ss_pred HHHHHHh------cCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhc--------------cHHHHHHHHHHHHccC
Confidence 5544433 24678899999999999999999999998766421 2346888888887764
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.014 Score=72.07 Aligned_cols=228 Identities=11% Similarity=0.042 Sum_probs=144.9
Q ss_pred hhhhhHHHHHhHhhccccCcchhHH---HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCc-hhHHH-HHHHHHH
Q 000194 84 AENLGALRAIDELIDVALGENASKV---SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMT-ADEVE-FQVKMAL 158 (1880)
Q Consensus 84 ~~r~~~i~ai~~Li~~~~~~~~~~~---~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~-~~~v~-~~~~~~~ 158 (1880)
..+..|..++..|.... .+....+ .-+.+.|..++. ++|.++...|+++|+.|+....... ..+++ .-++.++
T Consensus 215 ~l~~~Aa~aL~nLa~~~-~~~k~~i~~~~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV 292 (458)
T 3nmz_A 215 TLRRYAGMALTNLTFGD-VANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 292 (458)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-cccHHHHHHcCCcHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHH
Confidence 34666777777776432 1122223 123566777775 6789999999999999976311111 22232 2567777
Q ss_pred hhhcCCCcchhHHHHHHHHHHHHhhcCccchhc--hHHHHHHHHHHhcCCch----hHHHHHHHHHHHHHHHHhhhchhh
Q 000194 159 DWLRGDRVEYRRFAAVLILKEMAENASTVFNVH--VAEFVDAIWVALRDPTL----AVRERAVEALRACLRVIEKRETRW 232 (1880)
Q Consensus 159 ~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~--l~~i~~~i~~~l~D~~~----~VR~aA~~al~~~~~~i~~r~~~~ 232 (1880)
+.|....+...+..|+.+|..|+.+++..=... ....++.++..|.+++. .|++.|+.+|+.+..++...+ ..
T Consensus 293 ~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~-~~ 371 (458)
T 3nmz_A 293 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE-DH 371 (458)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCH-HH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCH-HH
Confidence 765544455667788888999987553321111 24678888888887665 489999999988765432111 12
Q ss_pred HHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhh
Q 000194 233 RVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAH 310 (1880)
Q Consensus 233 ~~~~~-~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~ 310 (1880)
+.... ...++.+..-|.+++ .+++..|+.+|..+.....+....-.+ ..++.++.+++++++.+|+.++.+|..|+.
T Consensus 372 ~~~i~~~G~i~~Lv~LL~~~~-~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 372 RQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HHHHHHTTHHHHHHHHSSCSC-HHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 22222 245677777777664 577888888888887433322211111 246677777888999999999999999998
Q ss_pred hChhh
Q 000194 311 FLRDR 315 (1880)
Q Consensus 311 ~~~~~ 315 (1880)
..|..
T Consensus 451 ~~p~k 455 (458)
T 3nmz_A 451 NRPAK 455 (458)
T ss_dssp CCSCC
T ss_pred CCHhh
Confidence 77754
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0087 Score=71.60 Aligned_cols=222 Identities=9% Similarity=-0.007 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHHHHhhhCCCCchhHH---HHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhch--HHHHHHH
Q 000194 125 REILVLASKVLGHLARAGGAMTADEV---EFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHV--AEFVDAI 199 (1880)
Q Consensus 125 ~~v~~~aa~~l~~L~~~~g~~~~~~v---~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l--~~i~~~i 199 (1880)
.++.+.|+++|..|+..... ....+ ...++.+++.|.+ .+...+..|+.+|+.|+.+........+ ...+|.+
T Consensus 98 ~~~q~~Aa~aL~nLa~~~~~-~k~~i~~~~GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGDVA-NKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHH-HHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 67899999999999864211 22223 2348888888864 4456788889999999875211112222 2457777
Q ss_pred HHHh-cCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHH--HHHHHHHHhhccCCCCh---hHHHHHHHHHHHHHH---c
Q 000194 200 WVAL-RDPTLAVRERAVEALRACLRVIEKRETRWRVQWY--YRMFEATQDGLGRNAPV---HSIHGSLLAVGELLR---N 270 (1880)
Q Consensus 200 ~~~l-~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~--~~~l~~~~~~l~~~~~~---~~~~~al~~l~~ll~---~ 270 (1880)
+..| +.+++.+++.|+.||..+... ....+.... ...++.+..-|.++++. +++..|+-+|..|.. .
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~----~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~ 251 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAH----CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 251 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTT----CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcc----ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccC
Confidence 7764 567889999999998876541 111223332 34666666666654322 467777777777764 2
Q ss_pred chhhhHHHHH--HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCCCC--cchHHHHH
Q 000194 271 TGEFMMSRYR--EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIPAE--RDSGFIAL 345 (1880)
Q Consensus 271 ~~~~~~~~~~--~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~~--r~~a~~al 345 (1880)
..+. ...+. ..++.++..+.+.+..+++.++.+|..++..+++.- .... ...++.|...|+..+. |..|..+|
T Consensus 252 ~~~~-~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~-~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL 329 (354)
T 3nmw_A 252 NEDH-RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQ-EALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 329 (354)
T ss_dssp CHHH-HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH-HHHHHTTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred CHHH-HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHH-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 2221 12222 256778888889999999999999999986555421 1111 3568888888876543 67899999
Q ss_pred HHHHhhchh
Q 000194 346 GEMAGALDG 354 (1880)
Q Consensus 346 g~la~~v~~ 354 (1880)
.+++..-+.
T Consensus 330 ~nL~~~~~~ 338 (354)
T 3nmw_A 330 RNLMANRPA 338 (354)
T ss_dssp HHHHTTCCG
T ss_pred HHHHcCCHH
Confidence 999877554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.054 Score=68.89 Aligned_cols=120 Identities=13% Similarity=0.028 Sum_probs=82.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHh---cCCcchHHHHHHHHHHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWS---LGEDLKRKEAFARLQTLA 1643 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~---~g~~~~~~~Al~~L~~~~ 1643 (1880)
.+...|...+.+..+.|+++.|...+.++....+.... ........+..+..+.. .| +..+|+..++..+
T Consensus 370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~---~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG----IYVGIAPLVGKATLLTRNPTVE---NFIEATNLLEKAS 442 (514)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS----CSSCSHHHHHHHHHHHTSCCTT---HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch----HHHHHHHHHHHHHHHhhhhhcC---CHHHHHHHHHHHH
Confidence 34678999999999999999999999888765442110 00113467778888888 77 4689999998876
Q ss_pred HHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000194 1644 MELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1880)
Q Consensus 1644 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1880)
..... ...++..+|.-.... ...++....|+++.+++|+...+|......
T Consensus 443 ~~~~~----------------------~~~~~~~la~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 443 KLDPR----------------------SEQAKIGLAQMKLQQ------EDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHCTT----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HhCcc----------------------cHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 53110 112333344433332 235778899999999999999998876544
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0012 Score=76.90 Aligned_cols=187 Identities=11% Similarity=0.065 Sum_probs=123.7
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCcc-----chhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhc--hhhHHH
Q 000194 163 GDRVEYRRFAAVLILKEMAENASTV-----FNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE--TRWRVQ 235 (1880)
Q Consensus 163 ~~~~~~~R~aA~~~l~~la~~~p~~-----l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~--~~~~~~ 235 (1880)
.+++|..|.+|+.-+..+....+.. ....+..+.+.+-..+.|++..|...|++++..++....... ......
T Consensus 19 ~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~ 98 (278)
T 4ffb_C 19 TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNIT 98 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHH
Confidence 5789999999999998887765432 223345556667788899999999999999988765432111 112234
Q ss_pred HHHHHHHHHHhh-ccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhh-hCh
Q 000194 236 WYYRMFEATQDG-LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAH-FLR 313 (1880)
Q Consensus 236 ~~~~~l~~~~~~-l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~-~~~ 313 (1880)
+...+++.+... ++++. ..++..++.++-.+++.... ...+.+.++..+++++|.+|..++..|..+.. |..
T Consensus 99 ~~~~~l~~lveK~l~~~k-~~~~~~a~~~l~~~~~~~~~-----~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 99 LISTWTPLLVEKGLTSSR-ATTKTQSMSCILSLCGLDTS-----ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHHHHHHHHHHHTSSCCC-HHHHHHHHHHHHHHHHTSSS-----SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCC
Confidence 566777877764 77764 45666777676666653321 12345666777899999999999888887643 333
Q ss_pred hhH-HHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh
Q 000194 314 DRF-VTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE 355 (1880)
Q Consensus 314 ~~f-~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~ 355 (1880)
... ....++.+++.+...|.+.+ .|..|..+++.+-..+|..
T Consensus 173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred CcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 221 22356777888888886543 6999999999999999864
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.02 Score=61.07 Aligned_cols=186 Identities=17% Similarity=0.190 Sum_probs=125.9
Q ss_pred CHHHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccc
Q 000194 22 SLDALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVA 100 (1880)
Q Consensus 22 ~~~~~~~l~~~l~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~ 100 (1880)
+.+.+.-++.-|.++++..+ +|-..|.+.+ ++++..--..-+..+.+.|.++++++|-..-.-|+-+++.|++.-
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~Leell----K~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v 106 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEIL----KRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV 106 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH----HHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHH----HhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC
Confidence 45567777777777765444 4655555555 343332222333445555667887777766677888888887652
Q ss_pred cCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHH
Q 000194 101 LGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180 (1880)
Q Consensus 101 ~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~l 180 (1880)
.-.++...+..+.+..++. .++.-....|++.+|.+ . .....+..+...++.+ ..++...+.+|+.++.++
T Consensus 107 -pL~~~~y~Kl~~aL~dlik-~~~~il~~eaae~Lgkl-k-----v~~~~~~V~~~l~sLl-~Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 107 -PMGSKTFLKAAKTLVSLLE-SPDDMMRIETIDVLSKL-Q-----PLEDSKLVRTYINELV-VSPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp -CBCHHHHHHHHHHHHHHTT-SCCHHHHHHHHHHHHHC-C-----BSCCCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHhc-CCCchHHHHHHHHhCcC-C-----cccchHHHHHHHHHHH-hCCChhHHHHHHHHHHHh
Confidence 1135566778899999986 77888999999999998 2 2222334444555555 667778899999999999
Q ss_pred HhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 000194 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACL 222 (1880)
Q Consensus 181 a~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1880)
+..+.+ ...+..|+..|-..|+.+++.+++-|..++..++
T Consensus 178 a~~S~D--~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 178 LNSSAD--SGHLTLILDEIPSLLQNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp GGGCSS--CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred hcccCC--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 986543 1345566666777888889999999998876554
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0071 Score=72.14 Aligned_cols=220 Identities=15% Similarity=0.132 Sum_probs=141.4
Q ss_pred HhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000194 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY 586 (1880)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1880)
+..-+.++.+++|.-||.+++.++.....+. ++.. ..+.|--+|...+-+|.
T Consensus 179 L~~DLFdp~WEiRHGAALGLREILR~hG~GA-------GR~~---------------------~~N~DLAvRLLCVLALD 230 (800)
T 3oc3_A 179 ISDNLLSYEWYKRHGAFLAFAAMFSEIDNGG-------DIQI---------------------RVDSKLFSKIYEILVTD 230 (800)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CCC---------------------CCCTTHHHHHHHHHHHB
T ss_pred HHHHhcCcchhhhhHHHHHHHHHHHHhccCC-------ceec---------------------cccHHHHHHHHHHHHhc
Confidence 3344667899999999999999886543211 1110 01113345555555663
Q ss_pred CCCCcchhhccHhhHHHHHHHhCCC-CHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHH
Q 000194 587 GNRGFDDFLAQADCLSAIFAALNDE-DFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL 665 (1880)
Q Consensus 587 ~~~~fd~~L~~~~~l~~L~~~l~D~-~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1880)
+|..|.+ |. ...||+++.++||.+ .+.|.. .. ++.+++..+ .. ..++.|.-++-.
T Consensus 231 ---RFGDYVS-------------DqVVAPVRETaAQtLGaL-~hLp~e-~~----IL~qLV~~l-~~-~~WEVRHGGLLG 286 (800)
T 3oc3_A 231 ---KFNDFVD-------------DRTVAPVRDAAAYLLSRI-YPLIGP-ND----IIEQLVGFL-DS-GDWQVQFSGLIA 286 (800)
T ss_dssp ---CCBBCSS-------------SSCBCHHHHHHHHHHHHH-TTTSCS-CC----HHHHHTTGG-GC-SCHHHHHHHHHH
T ss_pred ---ccccccc-------------CeeeeehHHHHHHHHHHH-HhCChh-HH----HHHHHHhhc-CC-CCeeehhhhHHH
Confidence 6766553 43 457999999999999 777765 22 333444333 33 568888776666
Q ss_pred HHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchh
Q 000194 666 LGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVT 745 (1880)
Q Consensus 666 L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~ 745 (1880)
|--+ .+.+.. ++.+++.++..+.+. +.+|+..++.++-.++ ....++.++..+-+.|.+.++..
T Consensus 287 LKYL----~DLL~~-Ld~Vv~aVL~GL~D~-----DDDVRAVAAetLiPIA------~p~~l~~LL~iLWd~L~~LDDLS 350 (800)
T 3oc3_A 287 LGYL----KEFVED-KDGLCRKLVSLLSSP-----DEDIKLLSAELLCHFP------ITDSLDLVLEKCWKNIESEELIS 350 (800)
T ss_dssp HHHT----GGGCCC-HHHHHHHHHHHTTCS-----SHHHHHHHHHHHTTSC------CSSTHHHHHHHHHHHHHTCCSCC
T ss_pred HHHH----HHHHHH-HHHHHHHHHhhcCCc-----ccHHHHHHHHHhhhhc------chhhHHHHHHHHHHHhhhhcccc
Confidence 5544 444444 789999999999985 7889888777765554 23457788888888887543322
Q ss_pred -hHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000194 746 -KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1880)
Q Consensus 746 -~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg 799 (1880)
.......-|+.++...... ...|.+++.|..+++.. -..||.++++++-
T Consensus 351 ASTgSVMdLLAkL~s~p~~a----~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~ 400 (800)
T 3oc3_A 351 VSKTSNLSLLTKIYRENPEL----SIPPERLKDIFPCFTSP-VPEVRTSILNMVK 400 (800)
T ss_dssp TTHHHHHHHHHHHHHHCTTC----CCCSGGGGGTGGGGTCS-SHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHcCCccc----ccChHHHHHHHhhhcCC-cHHHHHHHHHHHH
Confidence 2233455666777655321 12367888888888765 6799999999864
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.055 Score=57.85 Aligned_cols=170 Identities=17% Similarity=0.212 Sum_probs=125.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
|....|..++...++.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..++......
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~~~---~~~a~~~~~~~~~~~ 69 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN----------NVETLLKLGKTYMDIGL---PNDAIESLKKFVVLD 69 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcC
Confidence 55788999999999999999999999999988763 46778888999999995 678998888765432
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
.. .+.++..+|...... ...+.....|.++.+.+|+...+|+..|......
T Consensus 70 ~~----------------------~~~~~~~~~~~~~~~------~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~- 120 (184)
T 3vtx_A 70 TT----------------------SAEAYYILGSANFMI------DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSM- 120 (184)
T ss_dssp CC----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred ch----------------------hHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHh-
Confidence 11 123344555554443 3467888999999999999999999998776541
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
.-...|++.|-+++... + ........+=.+++..|..++..+.+++.+..=|
T Consensus 121 -------------g~~~~A~~~~~~~l~~~-----p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 121 -------------GEHDKAIEAYEKTISIK-----P-GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp -------------TCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred -------------CCchhHHHHHHHHHHhc-----c-hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 12347899999999885 2 3345566677778888888877777777665433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0099 Score=71.91 Aligned_cols=162 Identities=12% Similarity=0.139 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHH
Q 000194 1695 PEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLT 1774 (1880)
Q Consensus 1695 ~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLt 1774 (1880)
+++++.|+.+..+++.+..+|-.+|....+ | ..+-+...++.|...|...+--.-+ ...+--+-+..
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~k----y--------~p~k~~ehl~~~~~~ini~k~~~~~-~~~~~w~e~~~ 290 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSK----F--------KPQKMREHLELFWSRVNIPKVLRAA-EQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHT----T--------CHHHHHHHHHHHSTTSCHHHHHHHH-HTTTCHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHh----c--------CHHHHHHHHHHHHHHhcCcHHHHHH-HHHHHHHHHHH
Confidence 577888899998988888888888766543 2 1234556666775444331000000 11122344566
Q ss_pred HHHhcCCcHHHHHHHHhcc-cCCChhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCchhhHHHHHHHhcCCcHHH
Q 000194 1775 LWFNHGATEEVQIALQKGF-AHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLR 1853 (1880)
Q Consensus 1775 Lwf~~g~~~~v~~~~~~~~-~~ip~~~wl~~ipQLiaRi~~~~~~v~~~l~~lL~~i~~~hPqa~ly~L~~~~kS~~~~R 1853 (1880)
|.+.++.......+|.++. ..=....|..+| ...... .+....+.=....||..+-.-|+++..--+..|
T Consensus 291 ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~----~kv~n~-----elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r 361 (449)
T 1b89_A 291 LYDKYEEYDNAIITMMNHPTDAWKEGQFKDII----TKVANV-----ELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTR 361 (449)
T ss_dssp HHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHH----HHCSST-----HHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHH
T ss_pred HHHhhchHHHHHHHHHhCChhhhhhHHHHHHH----hchhHH-----HHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHH
Confidence 7778888766666666653 223334444443 333332 334444444448999998888888866556655
Q ss_pred HH----------HHHHHHHHHhhcccccccccccc
Q 000194 1854 RA----------AAQEVVDKVRQHSGVLVDQSCYT 1878 (1880)
Q Consensus 1854 ~~----------~a~~Il~~~~~~~~~lv~~a~~~ 1878 (1880)
.- -.+.=|...+.++..-|++|+-+
T Consensus 362 ~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnealn~ 396 (449)
T 1b89_A 362 AVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNN 396 (449)
T ss_dssp HHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 42 23444556666677777777543
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.037 Score=59.05 Aligned_cols=183 Identities=15% Similarity=0.156 Sum_probs=130.7
Q ss_pred hhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccc-cHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccc
Q 000194 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV-LPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLI 677 (1880)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v-~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~ 677 (1880)
+.+..|+..++|++..|+..|+.+++.+.+..|... .+.+.+++..++.-+ .+ .+.+..-.|+++|+.+.+..+-.
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~ll-k~-~dEkval~A~r~L~~LLe~vpL~- 109 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINAL-SQ-ENEKVTIKALRALGYLVKDVPMG- 109 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC-CS-TTHHHHHHHHHHHHHHHTTCCBC-
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH-hc-cchhHHHHHHHHHHHHHcCCCCC-
Confidence 568888899999999999999999999999876543 244455555555444 33 56777788999999999876522
Q ss_pred cCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 000194 678 RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1880)
Q Consensus 678 ~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l 757 (1880)
..-+..++..+...+.++ +.-+...+...+|.+ ......+.++..+...+. +.+..++.+|+.+|-.+
T Consensus 110 ~~~y~Kl~~aL~dlik~~-----~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~-Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 110 SKTFLKAAKTLVSLLESP-----DDMMRIETIDVLSKL------QPLEDSKLVRTYINELVV-SPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp HHHHHHHHHHHHHHTTSC-----CHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHT-CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC-----CchHHHHHHHHhCcC------CcccchHHHHHHHHHHHh-CCChhHHHHHHHHHHHh
Confidence 223456777777777753 666677777777766 233445677777777774 45678899999999999
Q ss_pred HhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000194 758 VQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 758 ~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~l 801 (1880)
+..++.. .....++.-+-.+|+++ ++.++..|+-.+-.+
T Consensus 178 a~~S~D~----~i~~~I~~eI~elL~~e-D~~l~e~aLd~Le~i 216 (265)
T 3b2a_A 178 LNSSADS----GHLTLILDEIPSLLQND-NEFIVELALDVLEKA 216 (265)
T ss_dssp GGGCSSC----CCGGGTTTTHHHHHTCS-CHHHHHHHHHHHHHH
T ss_pred hcccCCH----HHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 9888753 11234555666677666 889999888777655
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00084 Score=68.01 Aligned_cols=116 Identities=17% Similarity=0.188 Sum_probs=71.1
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHh
Q 000194 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSS 584 (1880)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1880)
..+...++++++.+|..|+.+++.+- . .. + +.|+ ..+.|+++.||..++.+
T Consensus 15 ~~l~~~L~~~~~~vR~~A~~~L~~~~---------------------~--~~-~----~~L~-~~L~d~~~~vR~~A~~a 65 (131)
T 1te4_A 15 VPRGSHMADENKWVRRDVSTALSRMG---------------------D--EA-F----EPLL-ESLSNEDWRIRGAAAWI 65 (131)
T ss_dssp ------CCSSCCCSSSSCCSSTTSCS---------------------S--TT-H----HHHH-HGGGCSCHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhC---------------------c--hH-H----HHHH-HHHcCCCHHHHHHHHHH
Confidence 34456778888889877654433211 0 01 2 2233 24678999999999999
Q ss_pred ccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHH
Q 000194 585 LYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAK 664 (1880)
Q Consensus 585 l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~ 664 (1880)
|+. + ..++.++.|..+++|+++.||..|+..|+++.. + ...|. ++..+ .+ ++..+|..|+.
T Consensus 66 L~~---~----~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--~-~a~~~-------L~~~l-~d-~~~~vr~~A~~ 126 (131)
T 1te4_A 66 IGN---F----QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--E-RVRAA-------MEKLA-ET-GTGFARKVAVN 126 (131)
T ss_dssp HGG---G----CSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--H-HHHHH-------HHHHT-TS-CCTHHHHHHHH
T ss_pred HHh---c----CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H-HHHHH-------HHHHH-hC-CCHHHHHHHHH
Confidence 852 1 224567888888899999999999999998763 1 11121 22223 33 56788888887
Q ss_pred HHHH
Q 000194 665 LLGC 668 (1880)
Q Consensus 665 ~L~~ 668 (1880)
.|+.
T Consensus 127 aL~~ 130 (131)
T 1te4_A 127 YLET 130 (131)
T ss_dssp HGGG
T ss_pred HHHh
Confidence 7653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.27 Score=59.08 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=87.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|...+.+..+.|+++.|...+.++...+|. .+.+....+.++...|+ ..+|+..+++.+....
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~ 282 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN----------DYLLWNKLGATLANGNQ---SEEAVAAYRRALELQP 282 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC
Confidence 5788889999999999999999999998876542 36777888889999995 6899999998765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc-----------hHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW-----------GKAWH 1716 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~-----------~k~w~ 1716 (1880)
. ...-...++.+|...|+ .++....|+++++++|+. ..+|.
T Consensus 283 ~---------------~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 283 G---------------YIRSRYNLGISCINLGA-------------HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp T---------------CHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred C---------------cHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 0 00111234555555544 467889999999999887 78999
Q ss_pred HHHHHHHHH
Q 000194 1717 SWALFNTAV 1725 (1880)
Q Consensus 1717 ~wA~~n~~~ 1725 (1880)
..|..+..+
T Consensus 335 ~l~~~~~~~ 343 (368)
T 1fch_A 335 TLRLALSML 343 (368)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888876653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.13 Score=56.85 Aligned_cols=168 Identities=16% Similarity=0.219 Sum_probs=122.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|...+....+.|+++.|...+.++...+|. .+...+..+..+...|+ ..+|+..+++.+..-.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~~~P 70 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ----------DPEALYWLARTQLKLGL---VNPALENGKTLVARTP 70 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC
Confidence 4578899999999999999999999999887663 47788889999999995 6899999998765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHH-----------hhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKL-----------GSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWH 1716 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~l-----------g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~ 1716 (1880)
. ...-...++.++... |+ .++.+..|+++++++|++..+|.
T Consensus 71 ~---------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~-------------~~~A~~~~~~al~~~P~~~~~~~ 122 (217)
T 2pl2_A 71 R---------------YLGGYMVLSEAYVALYRQAEDRERGKGY-------------LEQALSVLKDAERVNPRYAPLHL 122 (217)
T ss_dssp T---------------CHHHHHHHHHHHHHHHHTCSSHHHHHHH-------------HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred C---------------cHHHHHHHHHHHHHhhhhhhhhcccccC-------------HHHHHHHHHHHHHhCcccHHHHH
Confidence 0 011123456666666 54 46788999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCC
Q 000194 1717 SWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHV 1796 (1880)
Q Consensus 1717 ~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~i 1796 (1880)
..|...... .-...|+..|-+++.+. ........+-.+++..|..++....+++.+..-
T Consensus 123 ~lg~~~~~~--------------g~~~~A~~~~~~al~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 181 (217)
T 2pl2_A 123 QRGLVYALL--------------GERDKAEASLKQALALE-------DTPEIRSALAELYLSMGRLDEALAQYAKALEQA 181 (217)
T ss_dssp HHHHHHHHT--------------TCHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHc--------------CChHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 998775531 12347899999998873 223344556666777788777666666665433
Q ss_pred C
Q 000194 1797 N 1797 (1880)
Q Consensus 1797 p 1797 (1880)
|
T Consensus 182 P 182 (217)
T 2pl2_A 182 P 182 (217)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.048 Score=71.99 Aligned_cols=163 Identities=15% Similarity=0.158 Sum_probs=121.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++.+.|..++.+.++.|+++.|...+.++...+|. .+...+..+..+..+|+ ..+|+..+++.+.-
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~----------~~~a~~nLg~~l~~~g~---~~eA~~~~~~Al~l- 72 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE----------FAAAHSNLASVLQQQGK---LQEALMHYKEAIRI- 72 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH-
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh-
Confidence 35788999999999999999999999999988763 46777888899999995 68999999887642
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
.. -.+.++..+|.-..++ ...++.++.|++|++++|++..+|+.+|....+.
T Consensus 73 ~P---------------------~~~~a~~nLg~~l~~~------g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~- 124 (723)
T 4gyw_A 73 SP---------------------TFADAYSNMGNTLKEM------QDVQGALQCYTRAIQINPAFADAHSNLASIHKDS- 124 (723)
T ss_dssp CT---------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred CC---------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-
Confidence 10 1244566666666554 3468899999999999999999999999775541
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHH
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQ 1790 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~ 1790 (1880)
.-...|+..|-+++.+.+ ........+-.++...|+..+..+.++
T Consensus 125 -------------g~~~eAi~~~~~Al~l~P------~~~~a~~~L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 125 -------------GNIPEAIASYRTALKLKP------DFPDAYCNLAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp -------------TCHHHHHHHHHHHHHHCS------CCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHHhCC------CChHHHhhhhhHHHhcccHHHHHHHHH
Confidence 123478999999999852 334556666777777777665444433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.29 E-value=1.1 Score=50.20 Aligned_cols=112 Identities=11% Similarity=-0.005 Sum_probs=83.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|...+.+..+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+....
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----------DARGYSNRAAALAKLMS---FPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc----------cHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCH
Confidence 4678899999999999999999999998876552 36777888888888885 6899999998765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhc------ccchHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCA------TKWGKAWHSWAL 1720 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~------~~~~k~w~~wA~ 1720 (1880)
..+.++..+|...... ...++....|+++.+++ |+...+|...+.
T Consensus 205 ----------------------~~~~~~~~l~~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 205 ----------------------NFVRAYIRKATAQIAV------KEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp ----------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 0133455555555543 24678889999999999 777777766553
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.091 Score=56.89 Aligned_cols=135 Identities=15% Similarity=0.105 Sum_probs=94.6
Q ss_pred HHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhh-hCCCCch
Q 000194 69 QLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLAR-AGGAMTA 147 (1880)
Q Consensus 69 ~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~-~~g~~~~ 147 (1880)
++......|.+++....|..|+.+|..+ .. .....+.++..++.+..=.|++.++.+++.++. .+...
T Consensus 71 ~~~~la~~L~~~~~deVR~~Av~lLg~~-~~--------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 71 YIKKLAFLAYQSDVYQVRMYAVFLFGYL-SK--------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHT-TT--------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhc-cC--------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 4455566788888888999999988877 31 134667777755544456899999999999986 43222
Q ss_pred hHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 000194 148 DEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACL 222 (1880)
Q Consensus 148 ~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1880)
.++...+|..++..+.||.|+.... --+.. | .+......+++.|-....|++..||.+-+.+|+.+.
T Consensus 140 -----~l~~~~~W~~d~n~~VRR~Ase~~r-pW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~S 206 (240)
T 3l9t_A 140 -----ALPIIDEWLKSSNLHTRRAATEGLR-IWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDIS 206 (240)
T ss_dssp -----THHHHHHHHHCSSHHHHHHHHHHTC-SGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHhcCCCHHHHHHHHHhhH-HHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 2556778998777776665544332 22221 3 345666778888888888999999999999998754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.33 Score=56.99 Aligned_cols=116 Identities=11% Similarity=0.071 Sum_probs=85.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|...+.+..+.|+++.|...+.++...+|. .+......+.++...|+ ..+|+..+++.+....
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD----------DAQLWNKLGATLANGNR---PQEALDAYNRALDINP 237 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCC
Confidence 4678888999999999999999999998876542 36777888889988885 6889999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc------------chHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK------------WGKAW 1715 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~------------~~k~w 1715 (1880)
. ...++..+|...... ...++....|+++++.+|+ ...+|
T Consensus 238 ~----------------------~~~~~~~l~~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 289 (327)
T 3cv0_A 238 G----------------------YVRVMYNMAVSYSNM------SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMW 289 (327)
T ss_dssp T----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHH
T ss_pred C----------------------CHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHH
Confidence 0 122333444443332 2357788999999999998 78888
Q ss_pred HHHHHHHHH
Q 000194 1716 HSWALFNTA 1724 (1880)
Q Consensus 1716 ~~wA~~n~~ 1724 (1880)
..+|.....
T Consensus 290 ~~l~~~~~~ 298 (327)
T 3cv0_A 290 DFFRMLLNV 298 (327)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888877654
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.75 Score=57.66 Aligned_cols=326 Identities=12% Similarity=0.106 Sum_probs=160.0
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHcCCC--CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC--CChhh
Q 000194 10 YIGPPAPGAGGGSLDALNRILADLCTHG--NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES--NDAAE 85 (1880)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~l~s~~--~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s--~~~~~ 85 (1880)
+.|++.+|+++.+.+.+.++.+.|.+.. +++|.|..+|+.+- |+...+-...-++.|. ..++. .|.+.
T Consensus 7 ~~g~~~~~~~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~s----k~y~~~Vg~~~l~~li----~~L~~d~~D~e~ 78 (651)
T 3grl_A 7 VMGGQSAGPQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLS----KKYRLEVGIQAMEHLI----HVLQTDRSDSEI 78 (651)
T ss_dssp -----------CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTT----TTTTTHHHHHTHHHHH----HHHHSCTTCHHH
T ss_pred hhCCCCCCCCCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHH----HHhHHHhhhhhHHHHH----HHHhcccccHHH
Confidence 4667777888999999999999998775 46666888777763 4433332222122222 22221 34443
Q ss_pred hhhHHHHHhHhhccccCcch--------h-HHH----------HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCc
Q 000194 86 NLGALRAIDELIDVALGENA--------S-KVS----------KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMT 146 (1880)
Q Consensus 86 r~~~i~ai~~Li~~~~~~~~--------~-~~~----------~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~ 146 (1880)
=.+.+-.+-.+......+.. . .-- .....|..++. ..|..++-.+.+.|..|....+...
T Consensus 79 v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~-~~df~vR~~alqlL~~L~~~r~~~~ 157 (651)
T 3grl_A 79 IGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE-EFDFHVRWPGVKLLTSLLKQLGPQV 157 (651)
T ss_dssp HHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc-CccHHHHHHHHHHHHHHHhcCcHHH
Confidence 44444444333322211000 0 001 11234556665 6789999999999999988744322
Q ss_pred hh-HHH--HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCcc--chhchHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 000194 147 AD-EVE--FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTV--FNVHVAEFVDAIWVALRDPTLAVRERAVEALRAC 221 (1880)
Q Consensus 147 ~~-~v~--~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~--l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~ 221 (1880)
.+ ++. .-+.+++..|. ++++..|-.|+.+|.+|+.+.+.. +. -+...++.++..+++... ++ +..+...|
T Consensus 158 Q~~Il~~p~gi~~Lv~lL~-d~rE~iRneallLL~~Lt~~n~~iQklV-AFEnaFe~Lf~Ii~~Eg~-~~--Ggivv~DC 232 (651)
T 3grl_A 158 QQIILVSPMGVSRLMDLLA-DSREVIRNDGVLLLQALTRSNGAIQKIV-AFENAFERLLDIITEEGN-SD--GGIVVEDC 232 (651)
T ss_dssp HHHHHHSTTHHHHHHGGGG-CSSHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTHHHHHHHHHHHHTG-GG--SHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHh-CchHHHHHHHHHHHHHHhcCCHHHHHHH-HHhccHHHHHHHHHhcCC-Cc--cchhHHHH
Confidence 23 221 36777777775 456889999999999999987752 11 122345555555554333 11 11222233
Q ss_pred HHHHhh--hc-hhhHHHHHH-HHHHHHHhhccCCC---Ch-----hHHHHHHHHHHHHHHcchhh--hHHHHHH-----H
Q 000194 222 LRVIEK--RE-TRWRVQWYY-RMFEATQDGLGRNA---PV-----HSIHGSLLAVGELLRNTGEF--MMSRYRE-----V 282 (1880)
Q Consensus 222 ~~~i~~--r~-~~~~~~~~~-~~l~~~~~~l~~~~---~~-----~~~~~al~~l~~ll~~~~~~--~~~~~~~-----i 282 (1880)
+.++.+ |. +..+..+.. .+++.+..-+.... .| ....+++.+++-|+...+.. ...+-.. +
T Consensus 233 L~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~ 312 (651)
T 3grl_A 233 LILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGL 312 (651)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCC
Confidence 333322 11 112222211 23333333333221 12 22344555555555432210 1111111 3
Q ss_pred HHHHHHHhhcc--hhHHHHHHHHHhHhHhhhChh---hHHHH---H---HHHHHHHHHHhhcCC---CCcchHHHHHHHH
Q 000194 283 AEIVLRYLEHR--DRLVRLSITSLLPRIAHFLRD---RFVTN---Y---LKICMNHILTVLRIP---AERDSGFIALGEM 348 (1880)
Q Consensus 283 ~~~ll~~~~~~--~~~Vr~~~~~~i~~la~~~~~---~f~~~---y---l~~~~~~Ll~~L~~~---~~r~~a~~alg~l 348 (1880)
+..+++..-.. ...|+..++.+++.+..-++. .|.+. + .+.++..|+..+.+. ..|.+|+.|+...
T Consensus 313 l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay 392 (651)
T 3grl_A 313 LQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCF 392 (651)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 34455554433 567899999999998875542 33321 0 022343344444321 2377777777765
Q ss_pred H
Q 000194 349 A 349 (1880)
Q Consensus 349 a 349 (1880)
.
T Consensus 393 ~ 393 (651)
T 3grl_A 393 L 393 (651)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0067 Score=61.26 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=79.5
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHH
Q 000194 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1880)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1880)
.+.|+++.+|..++.+|.. +.. + .++.|..+++|+++.||..|+..||.+.. + ...|.+ +..
T Consensus 20 ~L~~~~~~vR~~A~~~L~~---~~~----~-~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~-~a~~~L-------~~~ 81 (131)
T 1te4_A 20 HMADENKWVRRDVSTALSR---MGD----E-AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E-RAVEPL-------IKL 81 (131)
T ss_dssp -CCSSCCCSSSSCCSSTTS---CSS----T-THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H-HHHHHH-------HHH
T ss_pred HhcCCCHHHHHHHHHHHHH---hCc----h-HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H-HHHHHH-------HHH
Confidence 4689999999999998862 111 1 25788889999999999999999999864 1 112222 222
Q ss_pred HhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHH
Q 000194 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGD 714 (1880)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~ 714 (1880)
+.+ +++.+|..|++.|+.+.. +..++.|+..++++ ++.|+..+..+++.
T Consensus 82 L~d--~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~-----~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 82 LED--DSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETG-----TGFARKVAVNYLET 130 (131)
T ss_dssp HHH--CCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSC-----CTHHHHHHHHHGGG
T ss_pred HcC--CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC-----CHHHHHHHHHHHHh
Confidence 333 578999999999998741 34567777777754 77888888877653
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.14 Score=60.48 Aligned_cols=275 Identities=15% Similarity=0.107 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHHhhhChHHHHH-HHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhccc
Q 000194 43 ASLALRKHIEEQARDLGGEAFSR-FMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEV 121 (1880)
Q Consensus 43 aa~~l~~~v~~~~~~~~~~~~~~-~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~ 121 (1880)
....+.+++--. +.++.|.+ ....+.-.+.+++.++|...|+-+-+++..+.... .+. .-..|.+.+=+.
T Consensus 44 c~~~l~kll~l~---~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~----iLv~Nsl~kDl~- 114 (355)
T 3tjz_B 44 CAHILTKILYLI---NQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDV----IIVTSSLTKDMT- 114 (355)
T ss_dssp HHHHHHHHHHHH---HHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCG----GGGHHHHHHHHH-
T ss_pred HHHHHHHHHHHH---HCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHH----HHHHHHHHhhcC-
Confidence 334466666433 33344533 22345555678999999999998999998887663 221 112345555454
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHH
Q 000194 122 KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWV 201 (1880)
Q Consensus 122 ~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~ 201 (1880)
++++-++..|-++++++... ...+.++..++.++ .+++...|.+|+....-+....|+.+. .+++.+-.
T Consensus 115 ~~N~~iR~lALRtL~~I~~~---~m~~~l~~~lk~~L----~d~~pyVRk~A~l~~~kL~~~~pe~v~----~~~~~l~~ 183 (355)
T 3tjz_B 115 GKEDSYRGPAVRALCQITDS---TMLQAIERYMKQAI----VDKVPSVSSSALVSSLHLLKCSFDVVK----RWVNEAQE 183 (355)
T ss_dssp SSCHHHHHHHHHHHHHHCCT---TTHHHHHHHHHHHH----TCSSHHHHHHHHHHHHHHTTTCHHHHH----TTHHHHHH
T ss_pred CCcHhHHHHHHHHHhcCCCH---HHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHHH
Confidence 45788999999999999764 34555666666666 467778888888888888888888765 45666667
Q ss_pred HhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhh-ccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH
Q 000194 202 ALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDG-LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR 280 (1880)
Q Consensus 202 ~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~ 280 (1880)
.+.|+++-|...|..++..+. +.+ ...+.++.+.+..+ +.+ +| +-+.++..+.....+.-...-.
T Consensus 184 ll~d~n~~V~~~Al~lL~ei~----~~d----~~a~~kLv~~l~~~~l~~--~~----~q~~llr~l~~~~~~d~~~~~~ 249 (355)
T 3tjz_B 184 AASSDNIMVQYHALGLLYHVR----KND----RLAVSKMISKFTRHGLKS--PF----AYCMMIRVASRQLEDEDGSRDS 249 (355)
T ss_dssp HTTCSSHHHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHSSCCSC--HH----HHHHHHHHHTCC----------
T ss_pred HhcCCCccHHHHHHHHHHHHH----hhc----hHHHHHHHHHHhcCCCcC--hH----HHHHHHHHHHHhccccchhhHH
Confidence 889999999766655554432 122 12344555544432 221 23 2223333222211110011224
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHhhchhhh
Q 000194 281 EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI--PAERDSGFIALGEMAGALDGEL 356 (1880)
Q Consensus 281 ~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~--~~~r~~a~~alg~la~~v~~~~ 356 (1880)
++++.+...++|.++.|.-.++.+|-.+....... +......+...|.+ +..|-.|+..|..++..-+..+
T Consensus 250 ~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v 322 (355)
T 3tjz_B 250 PLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKE-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAV 322 (355)
T ss_dssp -------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-----------
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHH-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHH
Confidence 46666777778999999988888777665433222 22333444444543 3457788888888776655443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.43 Score=54.32 Aligned_cols=126 Identities=13% Similarity=0.014 Sum_probs=87.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|...+..+...++++.|...+.++...+|. .+...+..+......|+.....+|+..+++.+....
T Consensus 141 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN----------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc----------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 4566777775666667999999999998877653 356666777777777753223468888888776543
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
..+. .. ....+.++..+|...... ...++....|+++++++|+...+|..+.....
T Consensus 211 ~~~~-------------~~-~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 211 PGGA-------------KY-KDELIEANEYIAYYYTIN------RDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp GGGG-------------GG-HHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred cccc-------------cc-hHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 2110 01 344667888888877664 45789999999999999999999988776543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.43 Score=57.35 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=83.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|..++.+..+.|+++.|...+.++...+|. .+.+....+..+...|+ ..+|+..+++.+....
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p 278 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE----------DYSLWNRLGATLANGDR---SEEAVEAYTRALEIQP 278 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCC
Confidence 5778999999999999999999999998877552 36777888888888885 6899999998765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc------------hHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW------------GKAW 1715 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~------------~k~w 1715 (1880)
. ...-...++.+|..+|+| ++....|++|++++|+. ..+|
T Consensus 279 ~---------------~~~~~~~l~~~~~~~g~~-------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 330 (365)
T 4eqf_A 279 G---------------FIRSRYNLGISCINLGAY-------------REAVSNFLTALSLQRKSRNQQQVPHPAISGNIW 330 (365)
T ss_dssp T---------------CHHHHHHHHHHHHHHTCC-------------HHHHHHHHHHHHHHHCC------------CHHH
T ss_pred C---------------chHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHHhCcccCCCcccchhhhHHHHH
Confidence 0 000112344555555443 67889999999998873 5677
Q ss_pred HHHHHHHH
Q 000194 1716 HSWALFNT 1723 (1880)
Q Consensus 1716 ~~wA~~n~ 1723 (1880)
..++....
T Consensus 331 ~~l~~~~~ 338 (365)
T 4eqf_A 331 AALRIALS 338 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776644
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.93 E-value=1.7 Score=52.60 Aligned_cols=128 Identities=11% Similarity=-0.018 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
...|...+.+..+.|+++.|...+.++....+..... .....+....+.+....|+ ..+|+..+++.+.....
T Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR----AVEAQSCYSLGNTYTLLQD---YEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc----hHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHh
Confidence 5688999999999999999999998877543221100 0113456677888888885 68899999886653321
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc------hHHHHHHHHHH
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW------GKAWHSWALFN 1722 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~------~k~w~~wA~~n 1722 (1880)
..+....+.++..+|...... ...++....|++|.++.+.. ..++..+|...
T Consensus 300 ----------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 357 (406)
T 3sf4_A 300 ----------------LNDRIGEGRACWSLGNAYTAL------GNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQ 357 (406)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------------cCCcHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 112334566677777766654 34688899999998875543 45666667665
Q ss_pred HHH
Q 000194 1723 TAV 1725 (1880)
Q Consensus 1723 ~~~ 1725 (1880)
...
T Consensus 358 ~~~ 360 (406)
T 3sf4_A 358 MVL 360 (406)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.69 Score=54.11 Aligned_cols=205 Identities=13% Similarity=0.140 Sum_probs=141.5
Q ss_pred ccHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHHhc-CCCCCCcccccCCCChHHHHHHHHHHHhcCCcch
Q 000194 1567 EDVETWLKFASLCRK-------SGRI-------SQARSTLVKLLQ-YDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLK 1631 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk-------~g~~-------~~a~~~L~~l~~-~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~ 1631 (1880)
.+.+.|+.++.+..+ .|++ +.|...+.++.. .+|. .+.+-+.++.++...|+
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~----------~~~~~~~~~~~~~~~~~--- 114 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK----------NMLLYFAYADYEESRMK--- 114 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT----------CHHHHHHHHHHHHHTTC---
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc----------cHHHHHHHHHHHHhcCC---
Confidence 457889888888764 4776 889999999887 4542 35677889999999995
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc
Q 000194 1632 RKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711 (1880)
Q Consensus 1632 ~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~ 1711 (1880)
..+|...+++.+.. . + .+.. .++..+|.+.... +..++....|.+|++.+|..
T Consensus 115 ~~~A~~~~~~al~~-~--p---------------~~~~---~~~~~~~~~~~~~------~~~~~A~~~~~~a~~~~p~~ 167 (308)
T 2ond_A 115 YEKVHSIYNRLLAI-E--D---------------IDPT---LVYIQYMKFARRA------EGIKSGRMIFKKAREDARTR 167 (308)
T ss_dssp HHHHHHHHHHHHTS-S--S---------------SCTH---HHHHHHHHHHHHH------HCHHHHHHHHHHHHTSTTCC
T ss_pred HHHHHHHHHHHHhc-c--c---------------cCcc---HHHHHHHHHHHHh------cCHHHHHHHHHHHHhcCCCC
Confidence 67899888886641 1 0 1111 1567777777654 34788999999999999998
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHh
Q 000194 1712 GKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQK 1791 (1880)
Q Consensus 1712 ~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~ 1791 (1880)
...|..+|...... . .-...|++.|-+++...+ ........+..+....|+..+....+++
T Consensus 168 ~~~~~~~a~~~~~~------~-------~~~~~A~~~~~~al~~~p------~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 168 HHVYVTAALMEYYC------S-------KDKSVAFKIFELGLKKYG------DIPEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp THHHHHHHHHHHHT------S-------CCHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------c-------CCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888777654321 0 123477888888888752 2344566777777888998888888888
Q ss_pred cccC--CChh----hHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCch
Q 000194 1792 GFAH--VNIN----TWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQ 1836 (1880)
Q Consensus 1792 ~~~~--ip~~----~wl~~ipQLiaRi~~~~~~v~~~l~~lL~~i~~~hPq 1836 (1880)
.+.. +|+. .|..++ ++..+.+.. .-...++.+..+.+|.
T Consensus 229 al~~~~l~p~~~~~l~~~~~-~~~~~~g~~-----~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 229 VLTSGSLPPEKSGEIWARFL-AFESNIGDL-----ASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHSSSSCGGGCHHHHHHHH-HHHHHHSCH-----HHHHHHHHHHHHHTTT
T ss_pred HHhccCCCHHHHHHHHHHHH-HHHHHcCCH-----HHHHHHHHHHHHHccc
Confidence 8874 5654 565554 333444332 2234666777788886
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.035 Score=65.48 Aligned_cols=240 Identities=12% Similarity=0.104 Sum_probs=105.5
Q ss_pred HHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000194 506 SVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSL 585 (1880)
Q Consensus 506 ~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1880)
.+.+-+.|+++-+|-.|..++|.+..+.. +..+ ...+..++.|.+|.||.+++-+.
T Consensus 108 sl~kDl~~~N~~iR~lALRtL~~I~~~~m-----------------------~~~l-~~~lk~~L~d~~pyVRk~A~l~~ 163 (355)
T 3tjz_B 108 SLTKDMTGKEDSYRGPAVRALCQITDSTM-----------------------LQAI-ERYMKQAIVDKVPSVSSSALVSS 163 (355)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCTTT-----------------------HHHH-HHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHhhcCCCcHhHHHHHHHHHhcCCCHHH-----------------------HHHH-HHHHHHHcCCCCHHHHHHHHHHH
Confidence 33455678899999999999998864321 2222 34456678999999999887664
Q ss_pred cCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHH
Q 000194 586 YGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL 665 (1880)
Q Consensus 586 ~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1880)
..--..++.+. ..++..+..+++|.++.|...|+.++..+.+..+. .+..++..+... +. +. +.+-..
T Consensus 164 ~kL~~~~pe~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~--------a~~kLv~~l~~~-~l-~~-~~~q~~ 231 (355)
T 3tjz_B 164 LHLLKCSFDVV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL--------AVSKMISKFTRH-GL-KS-PFAYCM 231 (355)
T ss_dssp HHHTTTCHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHSS-CC-SC-HHHHHH
T ss_pred HHHhccCHHHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--------HHHHHHHHHhcC-CC-cC-hHHHHH
Confidence 21011122221 13566777889999999999999999999876632 222233333221 11 00 122222
Q ss_pred HHHHHHhC-cccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCch
Q 000194 666 LGCLIRNC-ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAV 744 (1880)
Q Consensus 666 L~~l~~~~-~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~ 744 (1880)
+-.++... ++.-..-...+++.+.+.++.. ++.|.-.++.+|-.+.......+ ....+.+...+.. .+.
T Consensus 232 llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~-----~~aVvyEa~k~I~~l~~~~~~~~----~~a~~~L~~fLss-~d~ 301 (355)
T 3tjz_B 232 MIRVASRQLEDEDGSRDSPLFDFIESCLRNK-----HEMVVYEAASAIVNLPGCSAKEL----APAVSVLQLFCSS-PKA 301 (355)
T ss_dssp HHHHHTCC-----------------CCCCCS-----SHHHHHHHHHHHTC---------------CCCTHHHHHHS-SSS
T ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHhccCCCHHHH----HHHHHHHHHHHcC-CCc
Confidence 22222221 1110112244555666666643 67787777777655544222222 2223333344443 356
Q ss_pred hhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000194 745 TKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVL 798 (1880)
Q Consensus 745 ~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~l 798 (1880)
+.|=.|+..|..++......+.... ..+.+.++ +.+..++.-|+..+
T Consensus 302 niryvaLr~L~~l~~~~P~~v~~~n------~~ie~li~-d~n~sI~t~Aittl 348 (355)
T 3tjz_B 302 ALRYAAVRTLNKVAMKHPSAVTACN------LDLENLVT-DANRSIATLAITTL 348 (355)
T ss_dssp SSHHHHHHCC--------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHCcHHHHHHH------HHHHHHcc-CCcHhHHHHHHHHh
Confidence 7999999999998877655443322 12233333 33555665554444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.68 E-value=1.5 Score=60.04 Aligned_cols=301 Identities=13% Similarity=0.120 Sum_probs=172.1
Q ss_pred HHHhhhCCCCCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc
Q 000194 1274 AEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK 1353 (1880)
Q Consensus 1274 ~efm~~~~~~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~ 1353 (1880)
.+|.++.++ .+...+|.++..-+.|..|....|..- ..... +..++..++..|-+.-.......
T Consensus 1041 ~eyI~kLd~---~d~~eIA~Iai~lglyEEAf~IYkKa~----------~~~~A---~~VLie~i~nldrAiE~Aervn~ 1104 (1630)
T 1xi4_A 1041 MEYINRLDN---YDAPDIANIAISNELFEEAFAIFRKFD----------VNTSA---VQVLIEHIGNLDRAYEFAERCNE 1104 (1630)
T ss_pred HHHHHHhhh---ccHHHHHHHHHhCCCHHHHHHHHHHcC----------CHHHH---HHHHHHHHhhHHHHHHHHHhcCC
Confidence 345555454 557789999999999999997776531 11222 23334477777777766653322
Q ss_pred hhhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHH
Q 000194 1354 ELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMA 1433 (1880)
Q Consensus 1354 ~~~~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~ 1433 (1880)
..-.-..+..+++.|+|++|..+|++. .+ .+.......|+.++|+|+++..+....-... ++ ..+-...
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA----dD----~say~eVa~~~~~lGkyEEAIeyL~mArk~~-~e--~~Idt~L 1173 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA----DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKA-RE--SYVETEL 1173 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-cc--ccccHHH
Confidence 111122345689999999999999764 23 3456779999999999999987775421111 00 0011124
Q ss_pred HHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHH
Q 000194 1434 ANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEE 1513 (1880)
Q Consensus 1434 a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~ELeE 1513 (1880)
+.+..++++++.++.|++... ...+..+|..+.+ .+.+..|...-.+. ..|.+.-..+++ +.|+++
T Consensus 1174 afaYAKl~rleele~fI~~~n---~ad~~~iGd~le~-----eg~YeeA~~~Y~kA---~ny~rLA~tLvk---Lge~q~ 1239 (1630)
T 1xi4_A 1174 IFALAKTNRLAELEEFINGPN---NAHIQQVGDRCYD-----EKMYDAAKLLYNNV---SNFGRLASTLVH---LGEYQA 1239 (1630)
T ss_pred HHHHHhhcCHHHHHHHHhCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHhh---hHHHHHHHHHHH---hCCHHH
Confidence 667788899999999875322 1222223322211 12333343332221 234443334333 467888
Q ss_pred HHHhhcCCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHH
Q 000194 1514 VIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLV 1593 (1880)
Q Consensus 1514 ~i~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~ 1593 (1880)
+++....... .+.|.+--..|-+.-+.-.-......++ .+.+..-..++...+.|+++.|.+.+.
T Consensus 1240 AIEaarKA~n-----------~~aWkev~~acve~~Ef~LA~~cgl~Ii----v~~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1240 AVDGARKANS-----------TRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred HHHHHHHhCC-----------HHHHHHHHHHHhhhhHHHHHHHHHHhhh----cCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8875532211 2677654333321111111111111122 234444577777899999999999998
Q ss_pred HHhcCCCCCCc-----ccccCCCChHHHHHHHHHHHhcCCcc
Q 000194 1594 KLLQYDPETSH-----ENVRYHGPPQVMYAYLKYQWSLGEDL 1630 (1880)
Q Consensus 1594 ~l~~~~~~~~~-----~~~~~~~~~~v~~~~ak~lw~~g~~~ 1630 (1880)
+.+++++.-.. ..+...-.|.-..|++|+.|.+++..
T Consensus 1305 ~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~ 1346 (1630)
T 1xi4_A 1305 AALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP 1346 (1630)
T ss_pred HHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccc
Confidence 88877643100 01112346888889999999888754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.68 E-value=3.7 Score=49.82 Aligned_cols=121 Identities=13% Similarity=-0.041 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
...|..++.+..+.|+++.|...+.++....+..... .....+....+.+++..|+ ..+|+..+++.+.....
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 263 RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER----EVEAQSCYSLGNTYTLLHE---FNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999998877653321100 0124566778888888995 68899999887653321
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHH
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSW 1718 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~w 1718 (1880)
..+....+.++..+|...... ...++....|++|.++.++.......|
T Consensus 336 ----------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~ 383 (411)
T 4a1s_A 336 ----------------LGDRIGEARACWSLGNAHSAI------GGHERALKYAEQHLQLAXXXXXXXXXX 383 (411)
T ss_dssp ----------------HTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ----------------CCChHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHhhcccchhhh
Confidence 112345677788888877665 357899999999999988665444433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=95.65 E-value=0.88 Score=55.00 Aligned_cols=151 Identities=10% Similarity=-0.050 Sum_probs=106.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....|..+..+..+.|+++.|...+.++...+|. .+.+.+..+.++...|+. ..+|+..+++.+..-.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~----------~~~a~~~~g~~l~~~g~d--~~eAl~~~~~al~l~P 163 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA----------NYTVWHFRRVLLKSLQKD--LHEEMNYITAIIEEQP 163 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc----------CHHHHHHHHHHHHHcccC--HHHHHHHHHHHHHHCC
Confidence 4788999999999999999999999999988763 467778888888888841 5799999998775311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1880)
.. ..--..++.++..+|+| ++.+..|++|++++|+++.+|+..|......=.
T Consensus 164 ~~---------------~~a~~~~g~~~~~~g~~-------------~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~ 215 (382)
T 2h6f_A 164 KN---------------YQVWHHRRVLVEWLRDP-------------SQELEFIADILNQDAKNYHAWQHRQWVIQEFKL 215 (382)
T ss_dssp TC---------------HHHHHHHHHHHHHHTCC-------------TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred CC---------------HHHHHHHHHHHHHccCH-------------HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC
Confidence 00 00112345555555443 467889999999999999999998877665210
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHh
Q 000194 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFN 1778 (1880)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~ 1778 (1880)
| ..|+..|-++|.+. +. .......+-.+++.
T Consensus 216 -------------~-~eAl~~~~~al~l~-----P~-~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 216 -------------W-DNELQYVDQLLKED-----VR-NNSVWNQRYFVISN 246 (382)
T ss_dssp -------------C-TTHHHHHHHHHHHC-----TT-CHHHHHHHHHHHHH
T ss_pred -------------h-HHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHH
Confidence 1 25788888888875 22 23334444455555
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=95.62 E-value=2 Score=49.74 Aligned_cols=250 Identities=11% Similarity=0.063 Sum_probs=148.4
Q ss_pred HHHHHhccchhhhhhhccchhcccccccCCCCcHH---HHHHHHHHHhhcCChHHHhHHHHHHhchh--hhhhcHHHHHH
Q 000194 1292 GALAEKCRAFAKALHYKEMEFEGARSNRMDANPVA---VVEALIHINNQLHQHEAAVGILTYAQKEL--DVQLKESWYEK 1366 (1880)
Q Consensus 1292 ~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~---~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~--~~~~~~~~~e~ 1366 (1880)
.+-+..-|.|..|+-+.+..-. .+|.+ .-..|.+.|-.+|++|.+..-++...... ........+..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhccc--------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcC
Confidence 3557788999999988765422 12333 33468899999999999887665321110 11223345778
Q ss_pred hcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhH
Q 000194 1367 LQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQM 1446 (1880)
Q Consensus 1367 lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~ 1446 (1880)
.|++++|++.|++.+....+|+. .+....+-.++...|+++.-....+. +.+.+ .....+....++|+++.-
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~-~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~----~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTN-TTFLLMAASIYFYDQNPDAALRTLHQ---GDSLE----CMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSC-HHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHH----HHHHHHHHHHHTTCHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCC-HHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHH----HHHHHHHHHHHCCCHHHH
Confidence 89999999999988764323432 34445555778899999887766654 22222 222345567777777776
Q ss_pred HHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCc
Q 000194 1447 AEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPV 1526 (1880)
Q Consensus 1447 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~ELeE~i~~~~~~~~~~~ 1526 (1880)
.+.+..+... .++...
T Consensus 150 ~~~l~~~~~~-----------------~p~~~~----------------------------------------------- 165 (291)
T 3mkr_A 150 RKELKKMQDQ-----------------DEDATL----------------------------------------------- 165 (291)
T ss_dssp HHHHHHHHHH-----------------CTTCHH-----------------------------------------------
T ss_pred HHHHHHHHhh-----------------CcCcHH-----------------------------------------------
Confidence 5544432110 000000
Q ss_pred hhhHHHHHHHHHHHHHhh---ccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC
Q 000194 1527 AEGRRAIIRNMWTERIQG---TKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETS 1603 (1880)
Q Consensus 1527 ~~~~~~~l~~~W~~Rl~~---~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~ 1603 (1880)
..+...|-..+.+ ...-....+.++.. .| ++...|...+....+.|+++.|...+.+++..+|.
T Consensus 166 -----~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-----~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-- 232 (291)
T 3mkr_A 166 -----TQLATAWVSLAAGGEKLQDAYYIFQEMADK-----CS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-- 232 (291)
T ss_dssp -----HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----SC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred -----HHHHHHHHHHHhCchHHHHHHHHHHHHHHh-----CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Confidence 0011111111000 00011122222222 23 45778888999999999999999999999887663
Q ss_pred cccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000194 1604 HENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1880)
Q Consensus 1604 ~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~ 1644 (1880)
.|......+.+++..|+. ...+...+++.+.
T Consensus 233 --------~~~~l~~l~~~~~~~g~~--~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 --------HPETLINLVVLSQHLGKP--PEVTNRYLSQLKD 263 (291)
T ss_dssp --------CHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHH
Confidence 577888889999999963 2234566666543
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.035 Score=75.06 Aligned_cols=153 Identities=11% Similarity=0.103 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhhhc-CCChhhhhhHHHHHhHhhcccc-CcchhHHHHHHHHHHhhcccCCC-hHHHHHHHHHHHHHhhhC
Q 000194 66 FMDQLYDRISGLLE-SNDAAENLGALRAIDELIDVAL-GENASKVSKFSNYMRTVFEVKRD-REILVLASKVLGHLARAG 142 (1880)
Q Consensus 66 ~~~~l~~~i~~l~~-s~~~~~r~~~i~ai~~Li~~~~-~~~~~~~~~~~~~L~~~l~~~~d-~~v~~~aa~~l~~L~~~~ 142 (1880)
+.+.+.+.+.+..+ +++| .|.+.+.-+-.++--.. --......+..+.+..++. +.. .||++.|+.+|..|...+
T Consensus 798 ~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~-D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 798 HVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLY-NEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp HHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTT-CSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHcC
Confidence 34555556656565 5788 88877665544432100 0011122456677777774 667 899999999999998753
Q ss_pred CCCchhHHHHHHHHHHhhhcC-----------CCcchhHHHHHHHHHHHHhhcCccc--hhchHHHHHHHHHHhcCCchh
Q 000194 143 GAMTADEVEFQVKMALDWLRG-----------DRVEYRRFAAVLILKEMAENASTVF--NVHVAEFVDAIWVALRDPTLA 209 (1880)
Q Consensus 143 g~~~~~~v~~~~~~~~~~l~~-----------~~~~~~R~aA~~~l~~la~~~p~~l--~~~l~~i~~~i~~~l~D~~~~ 209 (1880)
+. ...++..+....+.+.. .+...+||||++.|+++....|..+ -+++|+++..+-...+||.+
T Consensus 876 ~~--~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~- 952 (997)
T 1vsy_5 876 KE--EQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM- 952 (997)
T ss_dssp CS--HHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-
T ss_pred Cc--hhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-
Confidence 12 12233334433333311 1122689999999999999999987 68999999999889999877
Q ss_pred HHHHHHHHHHHHHH
Q 000194 210 VRERAVEALRACLR 223 (1880)
Q Consensus 210 VR~aA~~al~~~~~ 223 (1880)
|+.++-++++.+-+
T Consensus 953 i~~tvk~tlseFkr 966 (997)
T 1vsy_5 953 TGNAAKNTISEFKK 966 (997)
T ss_dssp HHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 99999999887644
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.47 Score=52.26 Aligned_cols=167 Identities=16% Similarity=0.063 Sum_probs=113.0
Q ss_pred HHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc-----------C
Q 000194 1559 RALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL-----------G 1627 (1880)
Q Consensus 1559 R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~-----------g 1627 (1880)
++.+-...++...|...+.+..+.|+++.|...+.++...+|. .+...+..+..+... |
T Consensus 29 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~----------~~~a~~~lg~~~~~~~~~~~~~~~~~g 98 (217)
T 2pl2_A 29 ERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR----------YLGGYMVLSEAYVALYRQAEDRERGKG 98 (217)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 3333323356899999999999999999999999999887663 356677777887777 7
Q ss_pred CcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhh
Q 000194 1628 EDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQC 1707 (1880)
Q Consensus 1628 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~ 1707 (1880)
+..+|+..+++.+..-. -.+.++..+|...... ...++.+..|++|+++
T Consensus 99 ---~~~~A~~~~~~al~~~P----------------------~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 99 ---YLEQALSVLKDAERVNP----------------------RYAPLHLQRGLVYALL------GERDKAEASLKQALAL 147 (217)
T ss_dssp ---HHHHHHHHHHHHHHHCT----------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHhCc----------------------ccHHHHHHHHHHHHHc------CChHHHHHHHHHHHhc
Confidence 46889999888765311 0133455556555543 3468899999999999
Q ss_pred cccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHH
Q 000194 1708 ATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQI 1787 (1880)
Q Consensus 1708 ~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~ 1787 (1880)
+ +...+|...|......= -...|+..|-+++... +. .......+-.+++..|..++-..
T Consensus 148 ~-~~~~~~~~la~~~~~~g--------------~~~~A~~~~~~al~~~-----P~-~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 148 E-DTPEIRSALAELYLSMG--------------RLDEALAQYAKALEQA-----PK-DLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp C-CCHHHHHHHHHHHHHHT--------------CHHHHHHHHHHHHHHS-----TT-CHHHHHHHHHHHTC---------
T ss_pred c-cchHHHHHHHHHHHHcC--------------CHHHHHHHHHHHHHhC-----CC-ChHHHHHHHHHHHHccCHHHHHH
Confidence 9 88999999988755421 2347889999998875 22 33445566666777776655433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.78 Score=52.10 Aligned_cols=172 Identities=11% Similarity=0.010 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
.+.++..+....+.|+++.|...+.++...+|. .+.+.+..+...+..|+ ..+|+..+++.+. ..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~-~~- 67 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN----------SPYIYNRRAVCYYELAK---YDLAQKDIETYFS-KV- 67 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC----------CSTTHHHHHHHHHHTTC---HHHHHHHHHHHHT-TS-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHHhh---HHHHHHHHHHHHh-cc-
Confidence 356889999999999999999999999887653 24456777888888885 6899999988765 11
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1880)
.+....++++..+|...... ...++.+..|+++++.+|+...+|...|..+...
T Consensus 68 -----------------~~~~~~~~~~~~lg~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--- 121 (272)
T 3u4t_A 68 -----------------NATKAKSADFEYYGKILMKK------GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK--- 121 (272)
T ss_dssp -----------------CTTTCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT---
T ss_pred -----------------CchhHHHHHHHHHHHHHHHc------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---
Confidence 12233566677777776654 3578999999999999999999999999886641
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh
Q 000194 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI 1798 (1880)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~ 1798 (1880)
.-...|+..|-+++... +.+ ......+-...+..+...+..+.+++.+..-|.
T Consensus 122 -----------~~~~~A~~~~~~al~~~-----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 122 -----------GNFPLAIQYMEKQIRPT-----TTD-PKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp -----------TCHHHHHHHHGGGCCSS-----CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred -----------cCHHHHHHHHHHHhhcC-----CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 12347788888877763 222 222223331333345655666666665544443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.5 Score=52.51 Aligned_cols=169 Identities=15% Similarity=0.107 Sum_probs=117.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|..++.+..+.|+++.|...+.++...++. .+.+.+..+.+.+..|+ ..+|+..+++.+...
T Consensus 55 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~ 121 (243)
T 2q7f_A 55 EDAIPYINFANLLSSVNELERALAFYDKALELDSS----------AATAYYGAGNVYVVKEM---YKEAKDMFEKALRAG 121 (243)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc----------chHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhC
Confidence 35788999999999999999999999988776542 36777888889998885 678999988876532
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
.. . ..++..+|.-.... ...++....|+++++.+|+...+|..+|......
T Consensus 122 ~~------------------~----~~~~~~~a~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 172 (243)
T 2q7f_A 122 ME------------------N----GDLFYMLGTVLVKL------EQPKLALPYLQRAVELNENDTEARFQFGMCLANE- 172 (243)
T ss_dssp CC------------------S----HHHHHHHHHHHHHT------SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-
T ss_pred CC------------------C----HHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc-
Confidence 11 0 12233344433332 2357888999999999999999998888776542
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCC
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHV 1796 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~i 1796 (1880)
+ -...|+..|-+++... + ........+-.+.+..|+..+....+++.+..-
T Consensus 173 ------~-------~~~~A~~~~~~~~~~~-----~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 173 ------G-------MLDEALSQFAAVTEQD-----P-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp ------T-------CCHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred ------C-------CHHHHHHHHHHHHHhC-----c-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 1 1135777777777764 2 223445666667777788777776666665433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=95.46 E-value=1.3 Score=49.61 Aligned_cols=168 Identities=15% Similarity=0.080 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
...|...+......|+++.|...+.++...++. .+.+.+..+...+..|+ ..+|+..+++.+.....
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~~ 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS----------SADAHAALAVVFQTEME---PKLADEEYRKALASDSR 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----------hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcC
Confidence 788999999999999999999999988876542 36777888888888885 67899998887653210
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHh--hcccchHHHHHHHHHHHHHH
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ--CATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~--~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
...++..+|.-.... ...++....|.++.+ ..|....+|..+|......
T Consensus 104 ----------------------~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~- 154 (252)
T 2ho1_A 104 ----------------------NARVLNNYGGFLYEQ------KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM- 154 (252)
T ss_dssp ----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT-
T ss_pred ----------------------cHHHHHHHHHHHHHH------hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc-
Confidence 022333344333332 235778899999988 7788888888888765431
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
.-...|+..|-+++... .........+-.+++..|+..+....+++.+..-|
T Consensus 155 -------------g~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 206 (252)
T 2ho1_A 155 -------------KKPAQAKEYFEKSLRLN------RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG 206 (252)
T ss_dssp -------------TCHHHHHHHHHHHHHHC------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC
T ss_pred -------------CCHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 12347788888888774 22345567777788888888877777777765544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.27 Score=52.27 Aligned_cols=135 Identities=20% Similarity=0.233 Sum_probs=99.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++...|...+.+..+.|+++.|...+.++....+. .+.+....+...+..++ ...|+..+++.+...
T Consensus 37 ~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~---~~~a~~~~~~a~~~~ 103 (184)
T 3vtx_A 37 NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT----------SAEAYYILGSANFMIDE---KQAAIDALQRAIALN 103 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch----------hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 45789999999999999999999999988776542 46777788888888885 578888887765431
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
... ..-...++.+|..+|+ .++.++.|+++++.+|+...+|+..|......
T Consensus 104 ~~~---------------~~~~~~lg~~~~~~g~-------------~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~- 154 (184)
T 3vtx_A 104 TVY---------------ADAYYKLGLVYDSMGE-------------HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK- 154 (184)
T ss_dssp TTC---------------HHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred ccc---------------hHHHHHHHHHHHHhCC-------------chhHHHHHHHHHHhcchhhhHHHHHHHHHHHC-
Confidence 100 0111234555554444 47788999999999999999999999876541
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
+ -...|++.|-++|...
T Consensus 155 ------g-------~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 155 ------G-------LRDEAVKYFKKALEKE 171 (184)
T ss_dssp ------T-------CHHHHHHHHHHHHHTT
T ss_pred ------C-------CHHHHHHHHHHHHhCC
Confidence 1 2347899999998874
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=95.30 E-value=1.7 Score=54.43 Aligned_cols=198 Identities=20% Similarity=0.261 Sum_probs=115.0
Q ss_pred HhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccc--cc---HHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHh
Q 000194 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY--VL---PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRN 672 (1880)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~--v~---p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~ 672 (1880)
|.-++.|+..|.|....+|..++-+|..|+..|+.. ++ ..+.+ +..++..=... .....-+.++.++..|++.
T Consensus 165 p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~-Lf~Ii~~Eg~~-~Ggivv~DCL~ll~nLLr~ 242 (651)
T 3grl_A 165 PMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFER-LLDIITEEGNS-DGGIVVEDCLILLQNLLKN 242 (651)
T ss_dssp TTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH-HHHHHHHHTGG-GSHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHH-HHHHHHhcCCC-ccchhHHHHHHHHHHHHhc
Confidence 345788899999999999999999999999999641 00 11211 22233221222 2345566788889999876
Q ss_pred Cc---cccc--CchHHHHHHHHHHhccCCCC-CCChhHHHH---HHHHHHHHHHhcCCc--h-----hhhHHhHHHHHHH
Q 000194 673 CE---RLIR--PYIAPIHKALVARLLEGTGI-NANNGIISG---VLVTVGDLARVGGFG--M-----RQYISELMPLIVE 736 (1880)
Q Consensus 673 ~~---~~~~--py~~~il~~ll~~l~~~~~~-~~~~~v~~~---~~~~l~~La~~~g~~--~-----~~~~~~l~p~l~~ 736 (1880)
.+ ..|+ .+++.+ .+.+..+... .-......+ ++..+..+..-++.. . .-+-..+++.+++
T Consensus 243 N~sNQ~~FrEt~~i~~L----~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ 318 (651)
T 3grl_A 243 NNSNQNFFKEGSYIQRM----KPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCT 318 (651)
T ss_dssp CHHHHHHHHHTTCGGGG----GGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHH----HHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHH
Confidence 43 2222 122222 2223322100 001222333 444555554432220 1 1122345677777
Q ss_pred HHhc-CCchhhHHHHHHHHHHHHhhcCc-------ccccCC-cchHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000194 737 ALLD-GAAVTKREVAVSTLGQVVQSTGY-------VITPYN-EYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 737 ~l~d-~~~~~~r~~Al~~Lg~l~~~~~~-------~i~p~~-~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~l 801 (1880)
.+.. ......|..|+.++|.++++... .-.|+. ..|.++..|+.++.+.....+|.+++.|+...
T Consensus 319 ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay 392 (651)
T 3grl_A 319 ILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCF 392 (651)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 6653 33456889999999998876532 112332 34788888888887666789999999888764
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.35 Score=57.67 Aligned_cols=118 Identities=21% Similarity=0.301 Sum_probs=67.8
Q ss_pred chhHHHHHHhhccc--ccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhH
Q 000194 479 SAPVQLALQTLARF--NFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRR 556 (1880)
Q Consensus 479 ~~~~~~Al~~L~~~--~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (1880)
.+.+.+|-+.+..| .|. .+.+-.-++.+.+.++++..||+.|...+..+... . ...
T Consensus 42 ~k~K~LaaQ~I~kffk~FP--~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~------------------~i~ 99 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFP--ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--E------------------NLP 99 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCG--GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--T------------------CHH
T ss_pred HHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--h------------------hhh
Confidence 44678999999988 453 23344445667888999999999999888776532 1 112
Q ss_pred HHHHHHHHHHHHHhcCCCh---hHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcC
Q 000194 557 LIEELVEKLLIAAVADADV---TVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEK 629 (1880)
Q Consensus 557 ~~~~vl~~Ll~~~~~d~~~---~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~ 629 (1880)
-+.+|+.+|+ .+|... .|+.+.++-+. .|+ ...+..+|..+...+..+|+.+++.|..-...
T Consensus 100 kiaDvL~QlL---qtdd~~E~~~V~~sL~sllk----~Dp----k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~ 164 (507)
T 3u0r_A 100 RVADILTQLL---QTDDSAEFNLVNNALLSIFK----MDA----KGTLGGLFSQILQGEDIVRERAIKFLSTKLKT 164 (507)
T ss_dssp HHHHHHHHHT---TCCCHHHHHHHHHHHHHHHH----HCH----HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGG
T ss_pred hHHHHHHHHH---hccchHHHHHHHHHHHHHHh----cCh----HHHHHHHHHHHcccchHHHHHHHHHHHHHHhh
Confidence 2344444444 333321 23344444442 122 22455555444434567888888877554443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.23 E-value=1.8 Score=50.54 Aligned_cols=114 Identities=11% Similarity=0.006 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....|..++.+..+.|+++.|...+.++....+..... ...+.+....+.+.+..|+ ..+|+..+++.+....
T Consensus 222 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR----AVEAQSCYSLGNTYTLLQD---YEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHH
Confidence 36689999999999999999999988877543211000 0114556677888888885 6889999988765332
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK 1710 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~ 1710 (1880)
. ..+....+.++..+|...... ...++....|+++.++.++
T Consensus 295 ~----------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 295 E----------------LKDRIGEGRACWSLGNAYTAL------GNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp H----------------HTCHHHHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHC---
T ss_pred h----------------cCCcHHHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHHHh
Confidence 1 112334566677777766654 3468889999999888764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.21 Score=49.58 Aligned_cols=120 Identities=18% Similarity=0.089 Sum_probs=88.6
Q ss_pred HHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHH
Q 000194 1559 RALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFAR 1638 (1880)
Q Consensus 1559 R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~ 1638 (1880)
|...+.| +..+.|........+.|+++.|.....++...+|. .+.+.+..+.+++..|+ ..+|+..
T Consensus 4 r~a~inP-~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~~~~~~~~~~~---~~~A~~~ 69 (126)
T 4gco_A 4 RLAYINP-ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE----------NAILYSNRAACLTKLME---FQRALDD 69 (126)
T ss_dssp ---CCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHH
T ss_pred HHHHHCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHhhHHHhhcc---HHHHHHH
Confidence 3334444 34778888899999999999999999999887663 46788888999999995 6889999
Q ss_pred HHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHH
Q 000194 1639 LQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSW 1718 (1880)
Q Consensus 1639 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~w 1718 (1880)
+++.+.- .. -.++++..+|.-...+ ...++.+..|+++++++|++..++..+
T Consensus 70 ~~~al~~-~p---------------------~~~~a~~~lg~~~~~~------~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 70 CDTCIRL-DS---------------------KFIKGYIRKAACLVAM------REWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHHHHH-CT---------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHh-hh---------------------hhhHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 9887642 11 0133455555544443 245789999999999999999998877
Q ss_pred HH
Q 000194 1719 AL 1720 (1880)
Q Consensus 1719 A~ 1720 (1880)
+.
T Consensus 122 ~~ 123 (126)
T 4gco_A 122 RN 123 (126)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.47 Score=52.52 Aligned_cols=156 Identities=15% Similarity=0.036 Sum_probs=113.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|...+....+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..+++.+...
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN----------LANAYIGKSAAYRDMKN---NQEYIATLTEGIKAV 106 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS----------HHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc----------hHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHC
Confidence 45677888999999999999999999999887652 46778888999999995 689999999877532
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc--chHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK--WGKAWHSWALFNTA 1724 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~--~~k~w~~wA~~n~~ 1724 (1880)
... ......++.++..+|.+.... ...++.+..|++|++.+|+ ...+|..+|..+..
T Consensus 107 p~~---------------~~~~~~~~~~~~~~g~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 107 PGN---------------ATIEKLYAIYYLKEGQKFQQA------GNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp TTC---------------HHHHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred CCc---------------HHHHHHHHHHHHHHhHHHHHh------ccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 110 111244678899999998765 4689999999999999999 88999999888765
Q ss_pred HHHhhhc----cCCC---------CchhhHHHHHHHHHHHHHhhc
Q 000194 1725 VMSHYTL----RGLP---------SVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1725 ~~~~~~~----~~~~---------~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
.-...-. -... .........|+..|-+++.+.
T Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 166 NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4332100 0000 011223467888888888775
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.005 Score=68.89 Aligned_cols=16 Identities=25% Similarity=0.119 Sum_probs=8.8
Q ss_pred CCCCHHHHHHHHHHHH
Q 000194 784 GELVWSTRREVLKVLG 799 (1880)
Q Consensus 784 ~~~~~~vr~~~l~~lg 799 (1880)
.+.++.||.++...||
T Consensus 227 ~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 227 DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp CCCCHHHHHHHHCCC-
T ss_pred cCCCHHHHHHHHHHhC
Confidence 4556677766654443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=95.03 E-value=1.2 Score=49.76 Aligned_cols=172 Identities=13% Similarity=0.019 Sum_probs=120.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|...+.+..+.|+++.|...+.++....+. .+.+....+..+...|+ ..+|+..+++.+. .
T Consensus 69 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~-~ 134 (252)
T 2ho1_A 69 SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR----------NARVLNNYGGFLYEQKR---YEEAYQRLLEASQ-D 134 (252)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHTT-C
T ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC----------cHHHHHHHHHHHHHHhH---HHHHHHHHHHHHh-C
Confidence 34678899999999999999999999998876542 36777888888888885 6889998887654 0
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
.. ....+.++..+|...... ...++....|.++.+.+|....+|..+|..+...
T Consensus 135 ~~-------------------~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~- 188 (252)
T 2ho1_A 135 TL-------------------YPERSRVFENLGLVSLQM------KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE- 188 (252)
T ss_dssp TT-------------------CTTHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-
T ss_pred cc-------------------CcccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-
Confidence 00 111344455555555443 3468899999999999999999999888776541
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
.-...|+..|-+++... + ........+..+.+..|+..+..+.+++.+..-|
T Consensus 189 -------------g~~~~A~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 189 -------------REYVPARQYYDLFAQGG-----G-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp -------------TCHHHHHHHHHHHHTTS-----C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred -------------CCHHHHHHHHHHHHHhC-----c-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 12346788888877764 2 2344455566667777887776666665554433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=95.00 E-value=2.2 Score=46.25 Aligned_cols=168 Identities=12% Similarity=-0.033 Sum_probs=105.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++...|...+....+.|+++.|...+.++...+|. .+.+.+..+.+.+..|+ ..+|+..+++.+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~ 72 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK----------NELAWLVRAEIYQYLKV---NDKAQESFRQALSIK 72 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc----------chHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhC
Confidence 44677888888888888888888888887765442 35666777788888884 577888887765431
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHh--hcccchHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ--CATKWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~--~~~~~~k~w~~wA~~n~~ 1724 (1880)
.. .+.++..+|.-.... ....++....|+++++ .+|....+|+.+|.....
T Consensus 73 ~~----------------------~~~~~~~l~~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 125 (225)
T 2vq2_A 73 PD----------------------SAEINNNYGWFLCGR-----LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK 125 (225)
T ss_dssp TT----------------------CHHHHHHHHHHHHTT-----TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH
T ss_pred CC----------------------ChHHHHHHHHHHHHh-----cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH
Confidence 10 122334444443322 0245777888888888 556666777777766543
Q ss_pred HHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000194 1725 VMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1880)
Q Consensus 1725 ~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1880)
. .-...|+..|-+++... + ........+-.+.+..|+..+....+++.+.
T Consensus 126 ~--------------~~~~~A~~~~~~~~~~~-----~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 175 (225)
T 2vq2_A 126 Q--------------GQFGLAEAYLKRSLAAQ-----P-QFPPAFKELARTKMLAGQLGDADYYFKKYQS 175 (225)
T ss_dssp T--------------TCHHHHHHHHHHHHHHS-----T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred c--------------CCHHHHHHHHHHHHHhC-----C-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 12346777777777664 1 2234455566666777776666555555543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.8 Score=57.43 Aligned_cols=188 Identities=13% Similarity=0.098 Sum_probs=133.1
Q ss_pred CcccHHHHHHHHHHHHhcCCh-hHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 000194 1565 PTEDVETWLKFASLCRKSGRI-SQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643 (1880)
Q Consensus 1565 ~~e~~~~~lk~a~laRk~g~~-~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~ 1643 (1880)
+..+...|...+......|++ +.|...+.++...+|. .+...+..+.++|..|+ ..+|+..+++.+
T Consensus 98 ~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~al 164 (474)
T 4abn_A 98 AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE----------LVEAWNQLGEVYWKKGD---VTSAHTCFSGAL 164 (474)
T ss_dssp CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 446799999999999999999 9999999999887653 46788899999999995 689999998865
Q ss_pred HHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCC---CCCCHHHHHHHHHHHHhhcccchHHHHHHHH
Q 000194 1644 MELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGL---DDESIPEIIAAYRNATQCATKWGKAWHSWAL 1720 (1880)
Q Consensus 1644 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~---~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~ 1720 (1880)
.. . +. +.++..+|.-......+. .....++.+..|++|++++|+...+|+.+|.
T Consensus 165 ~~-~--------------------p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 221 (474)
T 4abn_A 165 TH-C--------------------KN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGN 221 (474)
T ss_dssp TT-C--------------------CC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hh-C--------------------CC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 31 0 01 244555555443320000 0024578899999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1721 FNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1721 ~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
.+...+-.. +. ...-...|+..|-+++.+.+. ..........+-.+++..|...+..+.+++.+..-|
T Consensus 222 ~~~~~~~~~---~~---~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 222 AYLSLYFNT---GQ---NPKISQQALSAYAQAEKVDRK---ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHT---TC---CHHHHHHHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhh---cc---ccchHHHHHHHHHHHHHhCCC---cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 887653211 11 124566899999999988521 003455566677777888888877777777665433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=94.93 E-value=1 Score=51.02 Aligned_cols=174 Identities=10% Similarity=0.047 Sum_probs=109.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...+...+....+.|+++.|...+.++....|... ..+.+.+..+...+..|+ ..+|+..++.++...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~a~~~lg~~~~~~~~---~~~A~~~~~~~l~~~ 82 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE-------WAADAQFYLARAYYQNKE---YLLAASEYERFIQIY 82 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST-------THHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc-------chHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHC
Confidence 4578899999999999999999999999987655310 126788889999999995 689999999987643
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCC--CCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH--
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPP--GLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN-- 1722 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~--~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n-- 1722 (1880)
... .....+++.+|.-.....+ .......++.+..|+++++.+|+...++..++...
T Consensus 83 p~~-------------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~ 143 (261)
T 3qky_A 83 QID-------------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL 143 (261)
T ss_dssp TTC-------------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred CCC-------------------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH
Confidence 211 1123334444444333100 00123568899999999999998876664332221
Q ss_pred --------HHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhc
Q 000194 1723 --------TAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNH 1779 (1880)
Q Consensus 1723 --------~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~ 1779 (1880)
..+-..+... .-...|+..|-+++...+. .....+...++-.+++..
T Consensus 144 ~~~~~~~~~~la~~~~~~-------g~~~~A~~~~~~~l~~~p~---~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 144 RAKLARKQYEAARLYERR-------ELYEAAAVTYEAVFDAYPD---TPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHCTT---STTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-------cCHHHHHHHHHHHHHHCCC---CchHHHHHHHHHHHHHHh
Confidence 1111111111 1235788888888876421 122444566666666655
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=94.84 E-value=1.9 Score=50.28 Aligned_cols=176 Identities=10% Similarity=0.075 Sum_probs=118.2
Q ss_pred cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChH-HHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000194 1566 TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQ-VMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1880)
Q Consensus 1566 ~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~-v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~ 1644 (1880)
.+....|+.++.+..+.|+++.|.....++...+|. .+. +.+.++.++...|+ ..+|...+++.+.
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~ 162 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI----------DPTLVYIQYMKFARRAEG---IKSGRMIFKKARE 162 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS----------CTHHHHHHHHHHHHHHHC---HHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc----------CccHHHHHHHHHHHHhcC---HHHHHHHHHHHHh
Confidence 356889999999999999999999999999876542 244 77888888888885 5788888887653
Q ss_pred HhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000194 1645 ELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1645 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1880)
.. + .. +.++...|.-.... ....++....|.++++.+|+...+|..+|.+..+
T Consensus 163 ~~---p---------------~~----~~~~~~~a~~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 215 (308)
T 2ond_A 163 DA---R---------------TR----HHVYVTAALMEYYC-----SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp ST---T---------------CC----THHHHHHHHHHHHT-----SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cC---C---------------CC----HHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 11 0 01 12232222221111 1457899999999999999999999999877432
Q ss_pred HHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1725 VMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1725 ~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
.+ -...|+..|-+++.... ..++....-..++..+...+|+..++.....+.+...|
T Consensus 216 -------~g-------~~~~A~~~~~~al~~~~--l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 216 -------LN-------EDNNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp -------TC-------CHHHHHHHHHHHHHSSS--SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred -------CC-------CHHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 11 23478888888887410 01122333345556666778888777766666655444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=94.83 E-value=7.5 Score=44.71 Aligned_cols=119 Identities=16% Similarity=0.139 Sum_probs=82.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|...+.+..+.|+++.|...+.++...+|. .....+..+-..+..+. .+..+|+..+++++...
T Consensus 128 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~----------~~~~~l~~a~~~l~~~~-~~~~eA~~~~~~~l~~~ 196 (291)
T 3mkr_A 128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQDED----------ATLTQLATAWVSLAAGG-EKLQDAYYIFQEMADKC 196 (291)
T ss_dssp CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC----------cHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHhC
Confidence 55788999999999999999999999998876542 23333333322332322 15789999999987652
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1880)
... ..--..+|.++..+|+| ++....|++|++.+|+...+|...+.+...
T Consensus 197 p~~---------------~~~~~~la~~~~~~g~~-------------~eA~~~l~~al~~~p~~~~~l~~l~~~~~~ 246 (291)
T 3mkr_A 197 SPT---------------LLLLNGQAACHMAQGRW-------------EAAEGVLQEALDKDSGHPETLINLVVLSQH 246 (291)
T ss_dssp CCC---------------HHHHHHHHHHHHHTTCH-------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCc---------------HHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 110 00011245555555554 678899999999999999999999876544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.66 E-value=4.2 Score=50.48 Aligned_cols=116 Identities=10% Similarity=-0.009 Sum_probs=70.8
Q ss_pred HHHHHHHHHhccchhhhhhhccchhcccc---cccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh-------hh
Q 000194 1288 IRLLGALAEKCRAFAKALHYKEMEFEGAR---SNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL-------DV 1357 (1880)
Q Consensus 1288 ~~~l~~~a~~c~a~a~AL~y~E~~~~~~~---~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~-------~~ 1357 (1880)
+..||.+-..-|.|..|+-+++....-.+ ....++....+...|..+|..+|+.+.+...+..+.... ..
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~ 133 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI 133 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch
Confidence 45688888888999999988876543111 001122334456788999999999999987766432110 00
Q ss_pred hh------cHHHHHHh--cCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhC
Q 000194 1358 QL------KESWYEKL--QRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALAR 1406 (1880)
Q Consensus 1358 ~~------~~~~~e~l--g~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~ 1406 (1880)
.. .+..+-++ +++++|+++|++.+...++. .+...++..++..+|.
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~---~~~~~~~~~~~~~l~~ 187 (472)
T 4g1t_A 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN---PEFTSGLAIASYRLDN 187 (472)
T ss_dssp CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcC
Confidence 11 11112233 46999999999998765543 3455555555544443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=94.65 E-value=1 Score=47.23 Aligned_cols=165 Identities=12% Similarity=-0.022 Sum_probs=109.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....|...+....+.|+++.|...+.++....+ ..+.+.+..+...+..|+ ..+|+..+++.+....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~ 73 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADA----------FDVDVALHLGIAYVKTGA---VDRGTELLERSLADAP 73 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS----------CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc----------cChHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCC
Confidence 366788889999999999999998877665433 236777788888888885 6789988888765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1880)
. ...++..+|...... ...++....|+++.+.+|....+|..+|......
T Consensus 74 ~----------------------~~~~~~~~a~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-- 123 (186)
T 3as5_A 74 D----------------------NVKVATVLGLTYVQV------QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL-- 123 (186)
T ss_dssp T----------------------CHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--
T ss_pred C----------------------CHHHHHHHHHHHHHh------cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc--
Confidence 0 012233334333322 2356788899999999998888888888765431
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcc
Q 000194 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGF 1793 (1880)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~ 1793 (1880)
.-...|+..|-+++... + ........+-.+.+..|+..+....+++.+
T Consensus 124 ------------~~~~~A~~~~~~~~~~~-----~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 124 ------------GRFDEAIDSFKIALGLR-----P-NEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp ------------TCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------CcHHHHHHHHHHHHhcC-----c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12346777787777764 2 223445556666677777666655555543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.64 E-value=1.4 Score=49.30 Aligned_cols=108 Identities=11% Similarity=0.120 Sum_probs=78.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
..+.|...+....+.|+++.|...+.++...+ . .+.+.+..+..++..|+ ..+|+..+++.+....
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~----------~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~~~ 69 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K----------DITYLNNRAAAEYEKGE---YETAISTLNDAVEQGR 69 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C----------CTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c----------cHHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCc
Confidence 46789999999999999999999999987754 1 36788889999999995 6889999998765322
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK 1710 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~ 1710 (1880)
.. .......+.++..+|...... ...++.+..|+++++++++
T Consensus 70 ~~---------------~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~a~~~~~~ 111 (258)
T 3uq3_A 70 EM---------------RADYKVISKSFARIGNAYHKL------GDLKKTIEYYQKSLTEHRT 111 (258)
T ss_dssp HT---------------TCCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCCC
T ss_pred cc---------------ccchHHHHHHHHHHHHHHHHc------ccHHHHHHHHHHHHhcCch
Confidence 11 112233466677777766654 3467777888888775543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=94.58 E-value=0.53 Score=49.45 Aligned_cols=150 Identities=16% Similarity=0.124 Sum_probs=103.5
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~~~~ 1364 (1880)
.++......+.|..|+.+++...... +........+..+|...|+.+.+...++..... . . .......+
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45777778889999998887765432 234567778999999999999998888754321 1 1 11233457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhHHHHHHHHHHHcCC
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW--TPAEPAARLEMAPMAANAAWNMGE 1442 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~~~~~a~aaw~l~~ 1442 (1880)
.+.|+|++|+..|++.+...++. ......+..++..+|+|+.-....+... .+... ......+.+.+..|+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPIN---FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG----KVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHhcCcHh---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch----HHHHHHHHHHHHcCC
Confidence 88999999999999988654332 3456778889999999987766655422 11121 223355678888999
Q ss_pred hhhHHHHHhh
Q 000194 1443 WDQMAEYVSR 1452 (1880)
Q Consensus 1443 Wd~~~~~~~~ 1452 (1880)
|+.-..+...
T Consensus 160 ~~~A~~~~~~ 169 (186)
T 3as5_A 160 HEEALPHFKK 169 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9887766553
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.50 E-value=2 Score=47.28 Aligned_cols=161 Identities=13% Similarity=0.107 Sum_probs=108.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|...+....+.|+++.|...+.++...+|. ..+...+..+.+.+..|+ ..+|+..+++.+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~- 72 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN---------QDSVTAYNCGVCADNIKK---YKEAADYFDIAIKKN- 72 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---------CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC---------CCcHHHHHHHHHHHHhhc---HHHHHHHHHHHHHhC-
Confidence 4688999999999999999999999998877541 124566678888999995 689999998876421
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1880)
+..+.++..+|.-.... ...++.+..|+++++.+|+....+..++.+...+-.
T Consensus 73 ---------------------p~~~~~~~~l~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~ 125 (228)
T 4i17_A 73 ---------------------YNLANAYIGKSAAYRDM------KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQ 125 (228)
T ss_dssp ---------------------CSHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred ---------------------cchHHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhH
Confidence 01344455555555443 346789999999999999988665555544433322
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcc-hHHhHHHHHHHHHhcC
Q 000194 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDD-SLQDILRLLTLWFNHG 1780 (1880)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~-~~q~~~RlLtLwf~~g 1780 (1880)
.+... .-...|++.|-+++... +.. .......+-.+++..|
T Consensus 126 ~~~~~-------~~~~~A~~~~~~al~~~-----p~~~~~~~~~~l~~~~~~~~ 167 (228)
T 4i17_A 126 KFQQA-------GNIEKAEENYKHATDVT-----SKKWKTDALYSLGVLFYNNG 167 (228)
T ss_dssp HHHHT-------TCHHHHHHHHHHHTTSS-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-------ccHHHHHHHHHHHHhcC-----CCcccHHHHHHHHHHHHHHH
Confidence 22111 23458999999999874 220 2344444445555544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=94.46 E-value=15 Score=46.43 Aligned_cols=205 Identities=13% Similarity=0.121 Sum_probs=137.7
Q ss_pred ccHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHhc-CCCCCCcccccCCCChHHHHHHHHHHHhcCCcch
Q 000194 1567 EDVETWLKFASLCRK-------SGRIS-------QARSTLVKLLQ-YDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLK 1631 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk-------~g~~~-------~a~~~L~~l~~-~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~ 1631 (1880)
.+.+.|+.++.+..+ .|+++ .|...+.++.. ..| ..+.+.+.++.+....|+
T Consensus 270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p----------~~~~l~~~~~~~~~~~g~--- 336 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK----------KNMLLYFAYADYEESRMK--- 336 (530)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS----------SCHHHHHHHHHHHHHTTC---
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc----------ccHHHHHHHHHHHHhcCC---
Confidence 458999999999986 68987 78888888875 444 246788899999999885
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc
Q 000194 1632 RKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711 (1880)
Q Consensus 1632 ~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~ 1711 (1880)
..+|...+++.+.. . + .+ .+.++..+|.+.... +..++....|.+|++..|..
T Consensus 337 ~~~A~~~~~~al~~-~--p---------------~~---~~~~~~~~~~~~~~~------~~~~~A~~~~~~Al~~~~~~ 389 (530)
T 2ooe_A 337 YEKVHSIYNRLLAI-E--D---------------ID---PTLVYIQYMKFARRA------EGIKSGRMIFKKAREDARTR 389 (530)
T ss_dssp HHHHHHHHHHHHHS-S--S---------------SC---HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHhCc-c--c---------------cC---chHHHHHHHHHHHHh------cCHHHHHHHHHHHHhccCCc
Confidence 67899988887642 1 0 01 124566777766543 24678899999999999888
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHh
Q 000194 1712 GKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQK 1791 (1880)
Q Consensus 1712 ~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~ 1791 (1880)
+..|..+|...+... + -...|.+.|-+++...+ ........+..+....|+..+....+++
T Consensus 390 ~~~~~~~a~~~~~~~------~-------~~~~A~~~~e~al~~~p------~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 390 HHVYVTAALMEYYCS------K-------DKSVAFKIFELGLKKYG------DIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp THHHHHHHHHHHHHT------C-------CHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHc------C-------ChhHHHHHHHHHHHHCC------CCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 888877776543311 1 12467888888887642 2344456666667777888888888888
Q ss_pred cccCC--Chh----hHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCch
Q 000194 1792 GFAHV--NIN----TWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQ 1836 (1880)
Q Consensus 1792 ~~~~i--p~~----~wl~~ipQLiaRi~~~~~~v~~~l~~lL~~i~~~hPq 1836 (1880)
.+... ++. .|..++-- -.+.+ + ..-+..+..+..+.+|.
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~-e~~~G--~---~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAF-ESNIG--D---LASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHH-HHHSS--C---HHHHHHHHHHHHHHTHH
T ss_pred HHhccCCCHHHHHHHHHHHHHH-HHHcC--C---HHHHHHHHHHHHHHCch
Confidence 77643 333 67665532 22333 3 13355666677777773
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.45 E-value=7.1 Score=46.86 Aligned_cols=112 Identities=13% Similarity=0.007 Sum_probs=72.5
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCc---HHHHHHHHHHHhhcCChHHHhHHHHHHhch------h-----
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANP---VAVVEALIHINNQLHQHEAAVGILTYAQKE------L----- 1355 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~---~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~------~----- 1355 (1880)
.+|....+.|.|..|+.+++......+ .++ ......|..+|...|+.+.+...++.+-.. .
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVGT-----EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 568888899999999999987765321 122 245667889999999999998877643211 0
Q ss_pred hhhhcHHHHHHhcCHHHHHHHHHHHHhccC---CCchhHHhHhhHhHHHHHhhC
Q 000194 1356 DVQLKESWYEKLQRWDDALKAYTNKASQAS---NPHIVLEATLGRMRCLAALAR 1406 (1880)
Q Consensus 1356 ~~~~~~~~~e~lg~W~~Al~~y~~~~~~~~---~~~~~~~~~~g~m~cl~~Lg~ 1406 (1880)
-....+..|...|+|++|+..|++.+...+ ++.........+-.++..+|+
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 011234458899999999999998775321 111112233445556666666
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=94.43 E-value=1.7 Score=48.02 Aligned_cols=169 Identities=13% Similarity=0.034 Sum_probs=103.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....|+..+....+.|+++.|...+.++...+|. .+.+.+..+.+++..|+ ..+|+..+++.+....
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~ 88 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE----------DAIPYINFANLLSSVNE---LERALAFYDKALELDS 88 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCC
Confidence 3677899999999999999999999998876542 36778888999999995 6899999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1880)
. .+.++..+|.-.... ...++....|+++.+.+|+...+|...|......
T Consensus 89 ~----------------------~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-- 138 (243)
T 2q7f_A 89 S----------------------AATAYYGAGNVYVVK------EMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL-- 138 (243)
T ss_dssp T----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT--
T ss_pred c----------------------chHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--
Confidence 0 123334444443332 2467889999999999999999999888775531
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
+ -...|+..|-+++... .........+-.+++..|...+..+.+.+.+..-|
T Consensus 139 -----~-------~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 190 (243)
T 2q7f_A 139 -----E-------QPKLALPYLQRAVELN------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP 190 (243)
T ss_dssp -----S-------CHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT
T ss_pred -----c-------cHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 1 2346788888888774 22344566677778888888887777776665444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.37 E-value=0.78 Score=43.75 Aligned_cols=114 Identities=11% Similarity=0.046 Sum_probs=86.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....|...+..+...|+++.|...+.++....|. .+.+.+..+.+.+..|+ ..+|+..+++.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~ 69 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH----------NHVLYSNRSAAYAKKGD---YQKAYEDGCKTVDLKP 69 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC----------cHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhCc
Confidence 4678999999999999999999999998876542 46778888999999995 6889999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1880)
. ...++..+|...... ...++....|+++.+.+|+...+|..++...
T Consensus 70 ~----------------------~~~~~~~~a~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 70 D----------------------WGKGYSRKAAALEFL------NRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp T----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred c----------------------cHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 0 123344455544433 2467889999999999999999999888653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=94.24 E-value=2.7 Score=45.51 Aligned_cols=165 Identities=12% Similarity=0.049 Sum_probs=111.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL-GEDLKRKEAFARLQTLAME 1645 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~-g~~~~~~~Al~~L~~~~~~ 1645 (1880)
++...|...+.+..+.|+++.|...+.++...++. .+.+....+.++... |+ ..+|+..+++.+.
T Consensus 40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~l~~~~~~~~~~---~~~A~~~~~~~~~- 105 (225)
T 2vq2_A 40 KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD----------SAEINNNYGWFLCGRLNR---PAESMAYFDKALA- 105 (225)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHTTTCC---HHHHHHHHHHHHT-
T ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHhcCc---HHHHHHHHHHHHc-
Confidence 34678899999999999999999999998876542 356777888888888 84 6889999988765
Q ss_pred hcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000194 1646 LSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV 1725 (1880)
Q Consensus 1646 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~ 1725 (1880)
.... .....++..+|...... ...++....|.++++.+|+...+|..+|......
T Consensus 106 ~~~~-------------------~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 106 DPTY-------------------PTPYIANLNKGICSAKQ------GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160 (225)
T ss_dssp STTC-------------------SCHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred CcCC-------------------cchHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 1100 11234455555554443 3467889999999999999999999988876542
Q ss_pred HHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHH
Q 000194 1726 MSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIAL 1789 (1880)
Q Consensus 1726 ~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~ 1789 (1880)
+ -...|+..|-+++... +.........+..+....|...+....+
T Consensus 161 -------~-------~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 161 -------G-------QLGDADYYFKKYQSRV-----EVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp -------T-------CHHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------C-------CHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 2236777777777764 2122333344445555666655544333
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.14 E-value=1.1 Score=43.83 Aligned_cols=117 Identities=12% Similarity=0.086 Sum_probs=87.8
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.....|...+..+.+.|+++.|...+.++...++. .+.+.+..+.++...|+ ..+|+..+++.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~ 80 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK----------DAKLYSNRAACYTKLLE---FQLALKDCEECIQLE 80 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT----------CHHHHHHHHHHHTTTTC---HHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------cHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhC
Confidence 45889999999999999999999999998876542 36777888888888884 688999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1880)
.. .+.++..+|.-.... ...++....|+++.+.+|+...+|..++.....
T Consensus 81 ~~----------------------~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 81 PT----------------------FIKGYTRKAAALEAM------KDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp TT----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred CC----------------------chHHHHHHHHHHHHH------hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 10 122344444443332 235788999999999999999999988876543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=94.11 E-value=1 Score=43.76 Aligned_cols=116 Identities=13% Similarity=0.054 Sum_probs=88.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|...+..+...|+++.|...+.++....+. .+.+.+..+.+.+..|+ ..+|+..++..+....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~ 77 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA----------NAVYFCNRAAAYSKLGN---YAGAVQDCERAICIDP 77 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHhhc---hHHHHHHHHHHHhcCc
Confidence 4678999999999999999999999998876542 36777888899988885 6889999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1880)
. ...++..+|...... ...++....|+++.+.+|+...+|+..|.....
T Consensus 78 ------------------~----~~~~~~~~~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 78 ------------------A----YSKAYGRMGLALSSL------NKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp ------------------T----CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred ------------------c----CHHHHHHHHHHHHHh------CCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 0 123455555555443 346788999999999999999999988877654
|
| >4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} | Back alignment and structure |
|---|
Probab=93.96 E-value=1.4 Score=46.67 Aligned_cols=135 Identities=17% Similarity=0.229 Sum_probs=90.2
Q ss_pred hHHHHHHHhccCCCCcchhhccHhhHHHHHHHh--CCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCC
Q 000194 576 TVRHSIFSSLYGNRGFDDFLAQADCLSAIFAAL--NDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSS 653 (1880)
Q Consensus 576 ~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l--~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~ 653 (1880)
..|..++++|..+..+.+.+ |-++.++.... +=.+..+-...++....|..+.--.+.|++.+++...++-+-...
T Consensus 23 ~~r~~aL~sL~~D~gL~~Ll--Pyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~ 100 (196)
T 4atg_A 23 DMKDIAIECLEKESGLQQLV--PYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKS 100 (196)
T ss_dssp TTHHHHHHHHHHCSSCTTTH--HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCChhhhH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcc
Confidence 57999999997544333211 22333332211 112455556677788888776656788999999988888764321
Q ss_pred -CChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHH
Q 000194 654 -ADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDL 715 (1880)
Q Consensus 654 -~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~L 715 (1880)
+....|+.|+.+++.+++..+....---+.|+..+.+.+.|+. ......-+++.++..+
T Consensus 101 l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~---~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 101 IVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPN---RSEDSQYGALYCLSIL 160 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTT---SCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCC---CChHHHHHHHHHHHHh
Confidence 2226899999999999998776665566789999999998863 3455556666665554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.58 Score=61.64 Aligned_cols=150 Identities=14% Similarity=0.059 Sum_probs=103.0
Q ss_pred HHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hhh----hhhcHHH
Q 000194 1289 RLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-ELD----VQLKESW 1363 (1880)
Q Consensus 1289 ~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~~----~~~~~~~ 1363 (1880)
..||.+..+-|.|..|+-+.+....-. ++.......|..+|.++|+.+.|.-.++.+-. +.+ ....+..
T Consensus 13 ~nLG~~~~~~G~~~eAi~~~~kAl~l~------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 13 NNLANIKREQGNIEEAVRLYRKALEVF------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 356777777888888888887766432 34466778899999999999999887775432 111 1223445
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhHHHHHHHHHHHcC
Q 000194 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW--TPAEPAARLEMAPMAANAAWNMG 1441 (1880)
Q Consensus 1364 ~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~~~~~a~aaw~l~ 1441 (1880)
|.++|+|++|+++|++.++..++. .+....+-.++..+|+++.-....+... .+...+.. ...+.+...+|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~----~~L~~~l~~~g 159 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAF---ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY----CNLAHCLQIVC 159 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHH----HHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH----hhhhhHHHhcc
Confidence 889999999999999988754432 4566778889999999987766655421 22222222 23356788899
Q ss_pred ChhhHHHHHh
Q 000194 1442 EWDQMAEYVS 1451 (1880)
Q Consensus 1442 ~Wd~~~~~~~ 1451 (1880)
+|+.-.+...
T Consensus 160 ~~~~A~~~~~ 169 (723)
T 4gyw_A 160 DWTDYDERMK 169 (723)
T ss_dssp CCTTHHHHHH
T ss_pred cHHHHHHHHH
Confidence 9988765544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.15 Score=52.43 Aligned_cols=108 Identities=11% Similarity=0.005 Sum_probs=76.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccc
Q 000194 1576 ASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSA 1655 (1880)
Q Consensus 1576 a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~ 1655 (1880)
..+.|+.|.++.|...+.+....+|. .+...+..+++.+..|+ ..+|+..+++.+.--.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~----------~~~~~~~la~~y~~~~~---~~~A~~~~~~al~~~p-------- 62 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQ----------KSIKGFYFAKLYYEAKE---YDLAKKYICTYINVQE-------- 62 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHH----------HHTTHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcc----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC--------
Confidence 45567778888888888877654321 24556788999999995 6899999998775311
Q ss_pred cccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000194 1656 ASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1656 ~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1880)
-.+.++..+|.-.... ...++.+..|++|++++|+...+|+.+|....+
T Consensus 63 --------------~~~~a~~~lg~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 63 --------------RDPKAHRFLGLLYELE------ENTDKAVECYRRSVELNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp --------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred --------------CCHHHHHHHHHHHHHc------CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 0133455555555443 246789999999999999999999999987654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=93.85 E-value=2.4 Score=51.16 Aligned_cols=141 Identities=8% Similarity=0.050 Sum_probs=98.8
Q ss_pred ccHHHHHHHHHHHHhcCC-hhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000194 1567 EDVETWLKFASLCRKSGR-ISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~-~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~ 1645 (1880)
.+...|...+.+..+.|+ ++.|...+.++...+|. .+.+.+-.+.++...|+ ..+|+..+++.+..
T Consensus 129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~----------~~~a~~~~g~~~~~~g~---~~eAl~~~~kal~l 195 (382)
T 2h6f_A 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK----------NYQVWHHRRVLVEWLRD---PSQELEFIADILNQ 195 (382)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHccC---HHHHHHHHHHHHHh
Confidence 446778888888888997 99999999999888763 46777777888888885 46799988887652
Q ss_pred hcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000194 1646 LSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV 1725 (1880)
Q Consensus 1646 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~ 1725 (1880)
-..+ ..--..++.++..+|+| ++.+..|.++++++|++..+|+..|.....+
T Consensus 196 dP~~---------------~~a~~~lg~~~~~~g~~-------------~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 196 DAKN---------------YHAWQHRQWVIQEFKLW-------------DNELQYVDQLLKEDVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp CTTC---------------HHHHHHHHHHHHHHTCC-------------TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred CccC---------------HHHHHHHHHHHHHcCCh-------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 1100 00112345555555554 4578999999999999999999999875542
Q ss_pred HHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1726 MSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1726 ~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
... .....+..++..|-++|.+.
T Consensus 248 ~~~--------~~eA~~~~el~~~~~Al~l~ 270 (382)
T 2h6f_A 248 TGY--------NDRAVLEREVQYTLEMIKLV 270 (382)
T ss_dssp TCS--------CSHHHHHHHHHHHHHHHHHS
T ss_pred cCc--------chHHHHHHHHHHHHHHHHHC
Confidence 210 01122445579999999885
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=93.80 E-value=1.4 Score=42.37 Aligned_cols=116 Identities=20% Similarity=0.235 Sum_probs=86.7
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.....|...+....+.|+++.|...+.++....+. .+.+.+..+..+...|+ ..+|+..+++.+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~ 73 (125)
T 1na0_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN----------NAEAWYNLGNAYYKQGD---YDEAIEYYQKALELD 73 (125)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC----------cHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhC
Confidence 34678999999999999999999999998776442 36677888888888885 688999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
.. . ...+..+|...... ...++....|+++.+.+|+...++..+|....
T Consensus 74 ~~------------------~----~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 74 PN------------------N----AEAWYNLGNAYYKQ------GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp TT------------------C----HHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred Cc------------------c----HHHHHHHHHHHHHh------cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 10 0 22344445544433 24678899999999999999999988887654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=93.64 E-value=1.2 Score=48.45 Aligned_cols=116 Identities=11% Similarity=0.017 Sum_probs=83.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHH----------------HHHHHHhcCCcch
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYA----------------YLKYQWSLGEDLK 1631 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~----------------~ak~lw~~g~~~~ 1631 (1880)
..+.++.-+....+.|+++.|...+.++...+|. .+...+. .+..+...|+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--- 69 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID----------RTEMYYWTNVDKNSEISSKLATELALAYKKNRN--- 69 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH----------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC---
Confidence 3567888888999999999999999998876542 2344444 7888888885
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc
Q 000194 1632 RKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711 (1880)
Q Consensus 1632 ~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~ 1711 (1880)
..+|+..+++.+..-.. .+.++..+|.-.... ...++.+..|+++++++|+.
T Consensus 70 ~~~A~~~~~~al~~~p~----------------------~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPN----------------------NVDCLEACAEMQVCR------GQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp HHHHHHHHHHHHHHCTT----------------------CHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHCCC----------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHcCCCC
Confidence 68999999887753110 122333444433332 23478889999999999999
Q ss_pred hHHHHHHHHHHHH
Q 000194 1712 GKAWHSWALFNTA 1724 (1880)
Q Consensus 1712 ~k~w~~wA~~n~~ 1724 (1880)
..+|+.+|.+...
T Consensus 122 ~~a~~~lg~~~~~ 134 (208)
T 3urz_A 122 LAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.57 E-value=1.4 Score=52.54 Aligned_cols=199 Identities=11% Similarity=0.015 Sum_probs=116.6
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|...+.+..+.|+++.|...+.++...+|. .+......+.+++..|+ ..+|+..+++.+...
T Consensus 97 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~ 163 (365)
T 4eqf_A 97 GDAEAWQFLGITQAENENEQAAIVALQRCLELQPN----------NLKALMALAVSYTNTSH---QQDACEALKNWIKQN 163 (365)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHcccc---HHHHHHHHHHHHHhC
Confidence 34678899999999999999999999998877552 36777888899999995 678999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc--chHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK--WGKAWHSWALFNTA 1724 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~--~~k~w~~wA~~n~~ 1724 (1880)
..... . .....-.+.++..+|..... ....++.+..|+++++.+|+ ...+|..+|.....
T Consensus 164 p~~~~---~---------~~~~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 164 PKYKY---L---------VKNKKGSPGLTRRMSKSPVD------SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp HHHHC---C----------------------------C------CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred ccchH---H---------HhhhccchHHHHHHHHHHhh------hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 10000 0 00000011222222332221 12346677788888888887 67777777766543
Q ss_pred HHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhh-HHH
Q 000194 1725 VMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINT-WLV 1803 (1880)
Q Consensus 1725 ~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~-wl~ 1803 (1880)
. .-...|+..|-+++... + ........+-.+++..|...+....+++.+..-|... .+.
T Consensus 226 ~--------------g~~~~A~~~~~~al~~~-----p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 285 (365)
T 4eqf_A 226 S--------------GEFNRAIDAFNAALTVR-----P-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRY 285 (365)
T ss_dssp H--------------TCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred C--------------CCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH
Confidence 1 12236677777777664 1 2244556666677777777776666666665444322 122
Q ss_pred HHHHHHHhccCCC
Q 000194 1804 VLPQIIARIHSNN 1816 (1880)
Q Consensus 1804 ~ipQLiaRi~~~~ 1816 (1880)
.+-.+..+.+..+
T Consensus 286 ~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 286 NLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHHHTCCH
T ss_pred HHHHHHHHCCCHH
Confidence 3344444444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.37 Score=47.79 Aligned_cols=103 Identities=15% Similarity=0.145 Sum_probs=67.8
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hhh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-ELD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~~----~~~~~~~~ 1364 (1880)
..|....+-|.|..|+.+.+..+... +......-.+..+|..+|+.+.+...++.+-. ... .-..+..|
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRD------PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45778888899999998887766432 34456677788888888888888776664322 110 12234457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHH
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCL 1401 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl 1401 (1880)
.++|+|++|+..|++.++..|+. .+...++-+||
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~---~~a~~~l~~~l 125 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSN---EEAREGVRNCL 125 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHCcCC---HHHHHHHHHhc
Confidence 88888888888888887654443 34444554553
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.58 Score=48.62 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=87.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++...|...+..+.+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..++..+...
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~ 75 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA----------NPIYLSNRAAAYSASGQ---HEKAAEDAELATVVD 75 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----------CHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhC
Confidence 35788999999999999999999999999887653 46788888999999995 689999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1880)
. ....++..+|.-...+ ...++.+..|+++++++|++..+|...+..
T Consensus 76 p----------------------~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 76 P----------------------KYSKAWSRLGLARFDM------ADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp T----------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred C----------------------CCHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 1 0134455555555443 246789999999999999999888776654
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.28 Score=54.33 Aligned_cols=192 Identities=10% Similarity=0.026 Sum_probs=109.6
Q ss_pred HHHHHHHhCCCCH--hHHHHHHHHHHhhhcCCcccccHHHH-HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcc--
Q 000194 601 LSAIFAALNDEDF--DVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCER-- 675 (1880)
Q Consensus 601 l~~L~~~l~D~~~--~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~-- 675 (1880)
++.+...|+.++. +++..|...+..++..++..-.-... ..+ +.|-.+..+ ++...++.|++.|..|+....+
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~I-p~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGI-LKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHH-HHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCH-HHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHH
Confidence 6667777776665 88888888888888766432111111 112 223333345 6788999999999999864322
Q ss_pred -cccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHh-------c-------
Q 000194 676 -LIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALL-------D------- 740 (1880)
Q Consensus 676 -~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~-------d------- 740 (1880)
.+.. ...++.|+..++.. .+..++..+..++-.|+...... ......-+|.+++.+. +
T Consensus 88 ~~I~~--~GaI~~Lv~lL~~~----~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~ 160 (233)
T 3tt9_A 88 LEVAE--LNGVPRLLQVLKQT----RDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKAN 160 (233)
T ss_dssp HHHHH--TTHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred HHHHH--cCCHHHHHHHHccC----CCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCccccccccc
Confidence 1111 13566677777642 26778888888888887532211 1122334666655331 1
Q ss_pred -CCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHH
Q 000194 741 -GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNG-----ELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 741 -~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~-----~~~~~vr~~~l~~lg~l 801 (1880)
..+.+++.+|..+|..++......=.-....+.+++.|+.+++. ..+.+.++.++.+|.-+
T Consensus 161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nL 227 (233)
T 3tt9_A 161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNL 227 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHH
Confidence 12457889999999988753211000011234567777777643 12345566666555444
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=93.32 E-value=3.9 Score=48.62 Aligned_cols=184 Identities=11% Similarity=0.061 Sum_probs=108.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|...+.+..+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..+++.+...
T Consensus 96 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~ 162 (368)
T 1fch_A 96 KHMEAWQYLGTTQAENEQELLAISALRRCLELKPD----------NQTALMALAVSFTNESL---QRQACEILRDWLRYT 162 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 35778889999999999999999999998877552 46778888899999995 688999999876532
Q ss_pred cCCCcccccc-ccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc--chHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAA-STSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK--WGKAWHSWALFNT 1723 (1880)
Q Consensus 1647 ~~~~~~~~~~-~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~--~~k~w~~wA~~n~ 1723 (1880)
.......... ...............+.++ ..|+| ++.+..|.++++.+|+ ...+|...|....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------------~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~ 228 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLF-------------LEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 228 (368)
T ss_dssp TTTGGGCC---------------CTTHHHH-HHHHH-------------HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccH-------------HHHHHHHHHHHHhCcCcccHHHHHHHHHHHH
Confidence 1110000000 0000000000001223332 44443 5566777777777777 6677777776644
Q ss_pred HHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1724 AVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1724 ~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
.. .-...|+..|-+++... + ........+-.+.+..|...+....+++.+..-|
T Consensus 229 ~~--------------g~~~~A~~~~~~al~~~-----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 282 (368)
T 1fch_A 229 LS--------------GEYDKAVDCFTAALSVR-----P-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282 (368)
T ss_dssp HT--------------TCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred Hc--------------CCHHHHHHHHHHHHHhC-----c-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 31 12235666676766653 1 2233445556666666776666665655554333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.26 E-value=1.1 Score=45.05 Aligned_cols=117 Identities=12% Similarity=0.025 Sum_probs=84.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|...+..+.+.|+++.|...+.++...++... ..+.+.+..+..+...|+ ..+|+..++..+...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~ 95 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ-------DQAVLHRNRAACHLKLED---YDKAETEASKAIEKD 95 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH-------HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccch-------HHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHhhC
Confidence 4589999999999999999999999999987654200 015667778888888884 678999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1880)
... ..-...++.++...|+ .++....|+++++++|+...+|..++..
T Consensus 96 ~~~---------------~~~~~~~a~~~~~~~~-------------~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 96 GGD---------------VKALYRRSQALEKLGR-------------LDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp SCC---------------HHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ccC---------------HHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 100 0011224444444444 5778899999999999999999877765
|
| >4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} | Back alignment and structure |
|---|
Probab=92.83 E-value=2.7 Score=44.43 Aligned_cols=101 Identities=10% Similarity=0.152 Sum_probs=77.9
Q ss_pred ChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCC--chhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHH
Q 000194 701 NNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGA--AVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLL 778 (1880)
Q Consensus 701 ~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~--~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~L 778 (1880)
+.......+..+..|...-.-.+.||+.+++|.++.++-... ....|+-|...|+.++...|.. .| ...|.++..+
T Consensus 59 ~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~-y~-~L~~RI~~tl 136 (196)
T 4atg_A 59 EAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRS-YK-TLAPRVLKTL 136 (196)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTT-ST-THHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCcc-Cc-hHHHHHHHHH
Confidence 455566667777777777677899999999999999885321 1269999999999999998864 22 2348889999
Q ss_pred HHHhcCC-CCHHHHHHHHHHHHHHcc
Q 000194 779 LKMLNGE-LVWSTRREVLKVLGIMGA 803 (1880)
Q Consensus 779 l~~L~~~-~~~~vr~~~l~~lg~lga 803 (1880)
.+.+.++ .+...+.-|+..+..+|.
T Consensus 137 ~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 137 KGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred HHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 8888543 478888889888888873
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.77 E-value=1.4 Score=42.97 Aligned_cols=115 Identities=10% Similarity=0.001 Sum_probs=86.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....|...+..+.+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..+++.+....
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p 69 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----------DARGYSNRAAALAKLMS---FPEAIADCNKAIEKDP 69 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCC
Confidence 3678999999999999999999999998887653 46778888899999995 6889999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhc------ccchHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCA------TKWGKAWHSWALF 1721 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~------~~~~k~w~~wA~~ 1721 (1880)
. ..+++..+|.-...+ ...++.+..|+++.+++ |+...+|..++..
T Consensus 70 ------------------~----~~~~~~~lg~~~~~~------~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 70 ------------------N----FVRAYIRKATAQIAV------KEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp ------------------T----CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred ------------------C----cHHHHHHHHHHHHHH------hCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 0 133444555544443 24578899999999999 8888888777765
Q ss_pred HH
Q 000194 1722 NT 1723 (1880)
Q Consensus 1722 n~ 1723 (1880)
..
T Consensus 122 ~~ 123 (126)
T 3upv_A 122 SQ 123 (126)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=92.70 E-value=10 Score=43.63 Aligned_cols=157 Identities=13% Similarity=0.038 Sum_probs=96.5
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCc---HHHHHHHHHHHhhcCChHHHhHHHHHHhch------h-----
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANP---VAVVEALIHINNQLHQHEAAVGILTYAQKE------L----- 1355 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~---~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~------~----- 1355 (1880)
..|....+.|.|..|+.+++......+ .++ ......+..+|...|+++.+...+..+... .
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGT-----EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCc-----ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 457788888999999999987765321 122 245568899999999999998877643211 0
Q ss_pred hhhhcHHHHHHhcCHHHHHHHHHHHHhcc---CCCchhHHhHhhHhHHHHHhhC--------------------HHHHHH
Q 000194 1356 DVQLKESWYEKLQRWDDALKAYTNKASQA---SNPHIVLEATLGRMRCLAALAR--------------------WEELNN 1412 (1880)
Q Consensus 1356 ~~~~~~~~~e~lg~W~~Al~~y~~~~~~~---~~~~~~~~~~~g~m~cl~~Lg~--------------------w~~l~~ 1412 (1880)
-....+..|...|+|++|+..|++.+... .++.........+-.++..+|+ ++.-..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 01123345889999999999999976532 1111112234556677788888 765554
Q ss_pred HHhhhcC----CCChHHHHhHHHHHHHHHHHcCChhhHHHHHh
Q 000194 1413 LCKEYWT----PAEPAARLEMAPMAANAAWNMGEWDQMAEYVS 1451 (1880)
Q Consensus 1413 ~~~~~~~----~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~ 1451 (1880)
..+.... ..+...........+...+..|+|+.-..+..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 207 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 207 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4432110 00111222233344567778888887766554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=92.64 E-value=1.2 Score=43.93 Aligned_cols=108 Identities=10% Similarity=0.034 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
...|-.....+.+.|+++.|.....++..++|. .+....-.+.+++..|+ -.+|+..+++.+.-...
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~----------~~~~~~nlg~~~~~~~~---~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS----------NITFYNNKAAVYFEEKK---FAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHhHHHHHHHhhh---HHHHHHHHHHHHHhCcc
Confidence 556778889999999999999999999888763 35667778888889995 68999999887643211
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK 1710 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~ 1710 (1880)
........+++|..+|.....+ ...++.++.|++|++.+|+
T Consensus 75 ---------------~~~~~~~~a~~~~~lg~~~~~~------~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 75 ---------------TRADYKLIAKAMSRAGNAFQKQ------NDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ---------------TTCCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSCC
T ss_pred ---------------cchhhHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCcC
Confidence 1223456899999999988776 4689999999999988775
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=92.55 E-value=7.6 Score=44.88 Aligned_cols=178 Identities=12% Similarity=-0.005 Sum_probs=118.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++...|...+....+.|+++.|...+.++...+|. .+.+.+..+..++..|+ ..+|+..+++.+...
T Consensus 53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~ 119 (327)
T 3cv0_A 53 EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK----------DIAVHAALAVSHTNEHN---ANAALASLRAWLLSQ 119 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 45788999999999999999999999998876542 36777888899999995 678999998876532
Q ss_pred cCCCccccccccccccccCcchhhH------HHHHHHH-hhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLI------ARVYLKL-GSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWA 1719 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~------a~~~~~l-g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA 1719 (1880)
..... ..... +.....+ |.|.. ......++....|.++.+.+|+...+|...|
T Consensus 120 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 120 PQYEQ---------------LGSVNLQADVDIDDLNVQSEDFFF-----AAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp TTTTT---------------C--------------------CCT-----TSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CccHH---------------HHHHHhHHHHHHHHHHHHHHhHHH-----HHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 11100 00000 0000011 21100 0123457788999999999999999999888
Q ss_pred HHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1720 LFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1720 ~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
...... .-...|++.|-+++... .........+-.+++..|...+....+++.+..-|
T Consensus 180 ~~~~~~--------------~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 180 VLYNLS--------------NNYDSAAANLRRAVELR------PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHHHT--------------TCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHh--------------ccHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 775531 12347788888888764 22345566777788888888877777777665444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=92.39 E-value=2.6 Score=40.86 Aligned_cols=121 Identities=11% Similarity=0.020 Sum_probs=90.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....|...+....+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..+++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~ 69 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT----------NMTYITNQAAVYFEKGD---YNKCRELCEKAIEVGR 69 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc----------cHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhhcc
Confidence 3578999999999999999999999998876542 36777888889888885 6789999988765422
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
.. .......+.++..+|...... ...++....|+++.+..| ....+...+....
T Consensus 70 ~~---------------~~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 70 EN---------------REDYRQIAKAYARIGNSYFKE------EKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HS---------------TTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred cc---------------chhHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 10 112234467777788777654 357889999999999988 4677777665543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=92.29 E-value=1.6 Score=54.55 Aligned_cols=142 Identities=14% Similarity=0.141 Sum_probs=100.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc---------CCcchHHHHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL---------GEDLKRKEAFA 1637 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~---------g~~~~~~~Al~ 1637 (1880)
.+...|..++.+..+.|+++.|...+.++...+|. +......+.+++.. | +..+|+.
T Consensus 135 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----------~~~~~~lg~~~~~~~~~~~~~~~g---~~~~A~~ 200 (474)
T 4abn_A 135 ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-----------KVSLQNLSMVLRQLQTDSGDEHSR---HVMDSVR 200 (474)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-----------HHHHHHHHHHHTTCCCSCHHHHHH---HHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----------HHHHHHHHHHHHHhccCChhhhhh---hHHHHHH
Confidence 45789999999999999999999999999887542 46667777788777 6 4678999
Q ss_pred HHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcc---cchHH
Q 000194 1638 RLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCAT---KWGKA 1714 (1880)
Q Consensus 1638 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~---~~~k~ 1714 (1880)
.+++.+...... ..--..++.+|..+ +.. . +.+....++.+..|++|++++| +...+
T Consensus 201 ~~~~al~~~p~~---------------~~~~~~lg~~~~~~--~~~-~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 260 (474)
T 4abn_A 201 QAKLAVQMDVLD---------------GRSWYILGNAYLSL--YFN-T--GQNPKISQQALSAYAQAEKVDRKASSNPDL 260 (474)
T ss_dssp HHHHHHHHCTTC---------------HHHHHHHHHHHHHH--HHH-T--TCCHHHHHHHHHHHHHHHHHCGGGGGCHHH
T ss_pred HHHHHHHhCCCC---------------HHHHHHHHHHHHHH--HHh-h--ccccchHHHHHHHHHHHHHhCCCcccCHHH
Confidence 988876531100 01112345555555 000 0 0001235788999999999999 99999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1715 WHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1715 w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
|+.+|..+... .-...|+..|-+++.+.
T Consensus 261 ~~~lg~~~~~~--------------g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 261 HLNRATLHKYE--------------ESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHT--------------TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHc--------------CCHHHHHHHHHHHHHhC
Confidence 99999886641 12347899999999885
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=92.01 E-value=0.51 Score=46.75 Aligned_cols=93 Identities=15% Similarity=0.129 Sum_probs=67.9
Q ss_pred HHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hhh-----------
Q 000194 1289 RLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-ELD----------- 1356 (1880)
Q Consensus 1289 ~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~~----------- 1356 (1880)
..||....+.|.|.+|+.+.+..+.-. ++.......+..+|..+|+.+.+.-.+..+-. ..+
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELD------PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 468899999999999999988776532 34456777889999999999988776654321 000
Q ss_pred hhhcHHHHHHhcCHHHHHHHHHHHHhccCCC
Q 000194 1357 VQLKESWYEKLQRWDDALKAYTNKASQASNP 1387 (1880)
Q Consensus 1357 ~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~ 1387 (1880)
....+..++++|+|++|+++|++.+...+++
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 1123446889999999999999988765554
|
| >1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 | Back alignment and structure |
|---|
Probab=91.76 E-value=19 Score=47.23 Aligned_cols=262 Identities=9% Similarity=0.054 Sum_probs=147.0
Q ss_pred HHHHHHHHHHhhccc---CCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcC--CCcchhHHHHHHHHHHHH
Q 000194 107 KVSKFSNYMRTVFEV---KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRG--DRVEYRRFAAVLILKEMA 181 (1880)
Q Consensus 107 ~~~~~~~~L~~~l~~---~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~--~~~~~~R~aA~~~l~~la 181 (1880)
...+|..-+..++-. +.+..++..+..++..|+........-.++..++++-+-|.+ -....+-.+|+..+..++
T Consensus 332 ~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~ 411 (799)
T 1vsy_4 332 CHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVI 411 (799)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 345565544322211 568899999999999999852211244677788888877754 333334466777777666
Q ss_pred hhc--CccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh-------------------------------
Q 000194 182 ENA--STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKR------------------------------- 228 (1880)
Q Consensus 182 ~~~--p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r------------------------------- 228 (1880)
.-. ...+.+|+..++...+.|+-=.++.--..+...+..++..+.-.
T Consensus 412 r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 491 (799)
T 1vsy_4 412 RFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGES 491 (799)
T ss_dssp HHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCC
T ss_pred HHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccc
Confidence 542 23567899999999999885334433333444444443322110
Q ss_pred ------c-----------hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhh
Q 000194 229 ------E-----------TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLE 291 (1880)
Q Consensus 229 ------~-----------~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~ 291 (1880)
+ .....+|...+++.+..-+.+..+.....+--.++..++...++ +-++.++..+..+..
T Consensus 492 ~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~---~if~~~l~k~~~fv~ 568 (799)
T 1vsy_4 492 SKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDD---KIFNYFASLLNRNFW 568 (799)
T ss_dssp SSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCH---HHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHH
Confidence 0 01234677777777666555432222222211234444444333 233444444554443
Q ss_pred cc-hhHHHHHHHHH----hHhHhhhChhhHHHHHHHHHHHHHHHhhcCC-----C-----Ccc----hHHHHHHHHHhhc
Q 000194 292 HR-DRLVRLSITSL----LPRIAHFLRDRFVTNYLKICMNHILTVLRIP-----A-----ERD----SGFIALGEMAGAL 352 (1880)
Q Consensus 292 ~~-~~~Vr~~~~~~----i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~-----~-----~r~----~a~~alg~la~~v 352 (1880)
.. .+...+++..+ +..++..+|+ ..+.+++.+...+...+.+. . .|. --+..|+.+....
T Consensus 569 ~n~~~~a~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~ 647 (799)
T 1vsy_4 569 SNDSFKEKDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNC 647 (799)
T ss_dssp SCSCCCSSSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcC
Confidence 22 12222333333 4566677787 44556666666665544332 0 122 3566777777888
Q ss_pred hhhhhhhhhHHHHHHHHhhc
Q 000194 353 DGELFHYLPTITSHLREAIA 372 (1880)
Q Consensus 353 ~~~~~p~l~~i~~~l~~~l~ 372 (1880)
|..+.+|-+++++.+...+.
T Consensus 648 g~~lL~y~deL~~il~~~~~ 667 (799)
T 1vsy_4 648 HESLLEYSDELITFMKYLYD 667 (799)
T ss_dssp GGGGGTTHHHHHHHHHHHHH
T ss_pred cHHHHccHHHHHHHHHHHHH
Confidence 88888999999998887664
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=91.72 E-value=6.7 Score=39.89 Aligned_cols=113 Identities=10% Similarity=-0.042 Sum_probs=85.2
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....|...+....+.|+++.|...+.++...++. .+.+.+..+.+....|+ ..+|+..+++.+....
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~a~~~~~ 78 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS----------NAIYYGNRSLAYLRTEC---YGYALGDATRAIELDK 78 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCc
Confidence 3678999999999999999999999998876542 36777888888888885 6889999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1880)
. .+.++..+|.-.... ...++....|+++++.+|+...+|..++..
T Consensus 79 ~----------------------~~~~~~~~a~~~~~~------~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 79 K----------------------YIKGYYRRAASNMAL------GKFRAALRDYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp T----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred c----------------------cHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 0 123445555554443 246788999999999999998888666654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.70 E-value=2.8 Score=47.32 Aligned_cols=166 Identities=13% Similarity=0.033 Sum_probs=107.1
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccc
Q 000194 1580 RKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTS 1659 (1880)
Q Consensus 1580 Rk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~ 1659 (1880)
..+|+++.|...+.++....+...+ ..+.+.+..+......|+ ..+|+..+++.+.....
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~----------- 75 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDD------ERAQLLYERGVLYDSLGL---RALARNDFSQALAIRPD----------- 75 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHH------HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCC-----------
T ss_pred CccchHHHHHHHHHHHHhcccccCc------hhHHHHHHHHHHHHHccc---HHHHHHHHHHHHHcCCC-----------
Confidence 4457788888888887765321111 135677788888888995 68899999887653110
Q ss_pred cccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchh
Q 000194 1660 LTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAP 1739 (1880)
Q Consensus 1660 ~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~ 1739 (1880)
.+.++..+|...... ...++.+..|+++++.+|+...+|..+|......
T Consensus 76 -----------~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-------------- 124 (275)
T 1xnf_A 76 -----------MPEVFNYLGIYLTQA------GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG-------------- 124 (275)
T ss_dssp -----------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT--------------
T ss_pred -----------cHHHHHHHHHHHHHc------cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh--------------
Confidence 123344555554443 3467889999999999999999999998876541
Q ss_pred hHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHHH
Q 000194 1740 QFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLV 1803 (1880)
Q Consensus 1740 ~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl~ 1803 (1880)
.-...|+..|-+++... +.+. .....+.+.+..|+..+....+.+.+...|...|..
T Consensus 125 g~~~~A~~~~~~a~~~~-----~~~~--~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (275)
T 1xnf_A 125 GRDKLAQDDLLAFYQDD-----PNDP--FRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW 181 (275)
T ss_dssp TCHHHHHHHHHHHHHHC-----TTCH--HHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH
T ss_pred ccHHHHHHHHHHHHHhC-----CCCh--HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHH
Confidence 12346788888888774 2222 222333444555666666666666666666555543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=91.57 E-value=1.8 Score=44.17 Aligned_cols=115 Identities=10% Similarity=-0.063 Sum_probs=82.3
Q ss_pred cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000194 1566 TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1880)
Q Consensus 1566 ~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~ 1645 (1880)
.+....|..++++..+.|+++.|...+.++...+|. .+.+.+..+.+....|+ ..+|+..+++.+.-
T Consensus 28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~----------~~~a~~~lg~~~~~~~~---~~~A~~~~~~al~~ 94 (150)
T 4ga2_A 28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER----------DPKAHRFLGLLYELEEN---TDKAVECYRRSVEL 94 (150)
T ss_dssp HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCc---hHHHHHHHHHHHHh
Confidence 345677899999999999999999999999988763 47788888999999995 68899999887653
Q ss_pred hcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHH-HHHHHHhhcccchHHHHHHHHH
Q 000194 1646 LSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIA-AYRNATQCATKWGKAWHSWALF 1721 (1880)
Q Consensus 1646 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~-~y~~a~~~~~~~~k~w~~wA~~ 1721 (1880)
-... ..--..+|.+|...|++ ++..+ ++++|++++|++..+|.-.+..
T Consensus 95 ~p~~---------------~~~~~~la~~~~~~~~~-------------~~aa~~~~~~al~l~P~~~~~~~l~~~l 143 (150)
T 4ga2_A 95 NPTQ---------------KDLVLKIAELLCKNDVT-------------DGRAKYWVERAAKLFPGSPAVYKLKEQL 143 (150)
T ss_dssp CTTC---------------HHHHHHHHHHHHHHCSS-------------SSHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CCCC---------------HHHHHHHHHHHHHcCCh-------------HHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 1100 00112234444444443 23344 4589999999999998866654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=91.52 E-value=1 Score=43.88 Aligned_cols=108 Identities=13% Similarity=-0.024 Sum_probs=55.0
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1880)
.++......+.|..|+.+++...... ++.......+..+|..+|+.+.+...+...... .. ....+..+
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELN------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34555556666667776666544321 222345555666666666666666555532211 00 11122345
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhC
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALAR 1406 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~ 1406 (1880)
.+.|+|++|...|++.+...++. ......+-.|+..+|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDN---ETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccc---hHHHHHHHHHHHHHhc
Confidence 66666666666666665543322 2233444455555554
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=91.37 E-value=30 Score=41.55 Aligned_cols=121 Identities=13% Similarity=0.165 Sum_probs=80.2
Q ss_pred HHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHH
Q 000194 71 YDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEV 150 (1880)
Q Consensus 71 ~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v 150 (1880)
.+.+.+|+...|...|..||-++-.++.- ..+.|.++.|.+++. .+|..-+...-++|-.|.... ...-+
T Consensus 67 i~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLq-tdd~~E~~~V~~sL~sllk~D---pk~tl 136 (507)
T 3u0r_A 67 INAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQ-TDDSAEFNLVNNALLSIFKMD---AKGTL 136 (507)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHC---HHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHh-ccchHHHHHHHHHHHHHHhcC---hHHHH
Confidence 45577899999999888888777777533 247899999999997 668888888888888877641 11122
Q ss_pred HHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCc-cchhchHHHH-HHHHHHhcCC
Q 000194 151 EFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAST-VFNVHVAEFV-DAIWVALRDP 206 (1880)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~-~l~~~l~~i~-~~i~~~l~D~ 206 (1880)
...+..+.. .++..|.-.+.+|+.=....|. .+...+..++ +.|-+.|.|-
T Consensus 137 ~~lf~~i~~-----~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DV 189 (507)
T 3u0r_A 137 GGLFSQILQ-----GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDV 189 (507)
T ss_dssp HHHHHHHHH-----SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHcc-----cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccc
Confidence 233333332 3467788888887765555443 5555555544 4566677554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=91.37 E-value=4.5 Score=39.77 Aligned_cols=117 Identities=11% Similarity=0.026 Sum_probs=86.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|...+..+.+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..++..+...
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~ 73 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----------VAVYYTNRALCYLKMQQ---PEQALADCRRALELD 73 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC----------cHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhC
Confidence 45789999999999999999999999998877653 36778888889988885 678999988876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc-----chHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK-----WGKAWHSWALF 1721 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~-----~~k~w~~wA~~ 1721 (1880)
.. ..+++..+|.-.... ...++.+..|+++++++|+ ....|...+..
T Consensus 74 p~----------------------~~~~~~~l~~~~~~~------~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 74 GQ----------------------SVKAHFFLGQCQLEM------ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp TT----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred ch----------------------hHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 10 123445555544443 2457889999999999987 66677666655
Q ss_pred HHH
Q 000194 1722 NTA 1724 (1880)
Q Consensus 1722 n~~ 1724 (1880)
...
T Consensus 126 ~~~ 128 (137)
T 3q49_B 126 KKK 128 (137)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=91.29 E-value=3.4 Score=47.23 Aligned_cols=193 Identities=17% Similarity=0.204 Sum_probs=122.0
Q ss_pred HhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHH---HH---HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHH
Q 000194 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA---LR---RHLIQLLTYLEQSSADNKCREESAKLLGCLIR 671 (1880)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~---l~---~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~ 671 (1880)
.+.+..|...+..=+++.|..+..++..+....++.=.|. +. .++..++...+ .++..-.+..+|-+.++
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe----~~diAl~~G~mLRecir 152 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE----SPEIALNCGIMLRECIR 152 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG----STTTHHHHHHHHHHHHT
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc----cchhHhHHHHHHHHHHH
Confidence 3578888888888899999999999999988776543332 21 12222232222 22322233333433333
Q ss_pred hC--cccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhc----CCchhhhHHhHHHHHHHHHhcCCchh
Q 000194 672 NC--ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG----GFGMRQYISELMPLIVEALLDGAAVT 745 (1880)
Q Consensus 672 ~~--~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~----g~~~~~~~~~l~p~l~~~l~d~~~~~ 745 (1880)
+- ...+. | .+.+..+...+.. ++-++.+.++.++.++-..- .+.+..+++.++..+-+.++. .+--
T Consensus 153 ~e~la~~iL-~-~~~f~~fF~yv~~-----~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S-~NYV 224 (341)
T 1upk_A 153 HEPLAKIIL-W-SEQFYDFFRYVEM-----STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS-ENYV 224 (341)
T ss_dssp SHHHHHHHH-H-SGGGGHHHHHTTC-----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC-SSHH
T ss_pred hHHHHHHHh-c-cHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC-Ccch
Confidence 20 00000 0 0011122233333 37888999999998876432 244566777888888775554 4566
Q ss_pred hHHHHHHHHHHHHhhcC--cccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcc
Q 000194 746 KREVAVSTLGQVVQSTG--YVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA 803 (1880)
Q Consensus 746 ~r~~Al~~Lg~l~~~~~--~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lga 803 (1880)
.|..+++-||.+...-. .++.-|..-|+-|..++.+|++. +..++.+|++++-...|
T Consensus 225 TkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 225 TKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence 78899999998886533 23566767789999999999854 89999999999887654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=91.28 E-value=5 Score=48.55 Aligned_cols=195 Identities=11% Similarity=-0.025 Sum_probs=120.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....++..+......|+++.|...+.++....+.. +. ....+.+..+.+.+..|+ ..+|+..+++.+....
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~-----~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~ 117 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTED-LR-----TLSAIYSQLGNAYFYLGD---YNKAMQYHKHDLTLAK 117 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-HH-----HHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccC-hh-----HHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHH
Confidence 36678889999999999999999999988765421 00 002456778888888895 6789999888765432
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhh------cccchHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQC------ATKWGKAWHSWALF 1721 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~------~~~~~k~w~~wA~~ 1721 (1880)
. ..+....+.++..+|...... ...++....|.++.++ .+....+|..+|..
T Consensus 118 ~----------------~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 118 S----------------MNDRLGEAKSSGNLGNTLKVM------GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNV 175 (411)
T ss_dssp H----------------TTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H----------------ccCchHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 1 123355677888888877665 3578899999999888 44556677777777
Q ss_pred HHHHHHhhhc---cCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcc
Q 000194 1722 NTAVMSHYTL---RGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGF 1793 (1880)
Q Consensus 1722 n~~~~~~~~~---~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~ 1793 (1880)
+...-+.... .............|++.|-+++.+................+-.+++..|+..+....+.+.+
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 6554320000 00011122345677777777766532111111122233444555666677666555555544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.25 E-value=22 Score=42.40 Aligned_cols=178 Identities=8% Similarity=-0.004 Sum_probs=118.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCcccc
Q 000194 1575 FASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQS 1654 (1880)
Q Consensus 1575 ~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~ 1654 (1880)
.+......|+++.|...+.++.......... .....+.+..+.+.+..|+ ..+|+..+++.+.-....
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~a~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~~~~----- 176 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDR----IEKAEFFFKMSESYYYMKQ---TYFSMDYARQAYEIYKEH----- 176 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCH----HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhC-----
Confidence 7888999999999999999987652211100 0123556677778888885 688999998876544321
Q ss_pred ccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch------HHHHHHHHHHHHHHHh
Q 000194 1655 AASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG------KAWHSWALFNTAVMSH 1728 (1880)
Q Consensus 1655 ~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~------k~w~~wA~~n~~~~~~ 1728 (1880)
.......+.++..+|.-.... ...++.+.+|.+|.++.++.. .+|+..|..+..
T Consensus 177 ----------~~~~~~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~---- 236 (383)
T 3ulq_A 177 ----------EAYNIRLLQCHSLFATNFLDL------KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS---- 236 (383)
T ss_dssp ----------STTHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----
T ss_pred ----------ccchHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----
Confidence 112445678888888877665 357899999999998876543 355555555432
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000194 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1880)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1880)
.+ -...|++.|-+++.+................+-.+++..|+..+....+++.+.
T Consensus 237 ---~g-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 237 ---QS-------QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp ---TT-------CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---CC-------CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 234788888888876322111133455567777788888988877776666653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.20 E-value=13 Score=42.41 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhcCChHHHhHHHHHHhch--------hh-----hhhcHHHHHHhcCHHHHHHHHHHHHhcc-----CCC
Q 000194 1326 AVVEALIHINNQLHQHEAAVGILTYAQKE--------LD-----VQLKESWYEKLQRWDDALKAYTNKASQA-----SNP 1387 (1880)
Q Consensus 1326 ~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~--------~~-----~~~~~~~~e~lg~W~~Al~~y~~~~~~~-----~~~ 1387 (1880)
.....|..+|...|+.+.+.-.++.+... .. ....+..|...|+|++|+..|++.+... .+.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44556777777778877777666543220 00 1122335778899999999998877531 222
Q ss_pred chhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCC------CChHHHHhHHHHHHHHHHHcCChhhHHHHHh
Q 000194 1388 HIVLEATLGRMRCLAALARWEELNNLCKEYWTP------AEPAARLEMAPMAANAAWNMGEWDQMAEYVS 1451 (1880)
Q Consensus 1388 ~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~------~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~ 1451 (1880)
.........+-.|+..+|+|+.-....+..... .+...........+.+.+..|+|+.-.++..
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 222445567778888899987766555432210 0111122223344667778888887766554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=91.01 E-value=1.4 Score=49.82 Aligned_cols=124 Identities=14% Similarity=0.000 Sum_probs=83.0
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh-------hhhcH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD-------VQLKE 1361 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~-------~~~~~ 1361 (1880)
.+|....+-|.|..|+-+++......+. ++......-.|..+|..+|+.+.+...++..-.. ++ .-..+
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg 96 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTYGRT---HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERA 96 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGGCSC---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCC---CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Confidence 4577778889999999998877654321 1112456678899999999999999888754321 10 11223
Q ss_pred HHHHH--------hcCHHHHHHHHHHHHhccCCCchhHHhH--------------hhHhHHHHHhhCHHHHHHHHhh
Q 000194 1362 SWYEK--------LQRWDDALKAYTNKASQASNPHIVLEAT--------------LGRMRCLAALARWEELNNLCKE 1416 (1880)
Q Consensus 1362 ~~~e~--------lg~W~~Al~~y~~~~~~~~~~~~~~~~~--------------~g~m~cl~~Lg~w~~l~~~~~~ 1416 (1880)
..|.+ .|+|++|+..|++.+...++........ ..+-+|+..+|+|+.-....+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 97 MCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 45677 9999999999999887655432211221 4556778888888766555543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=90.96 E-value=1.8 Score=42.19 Aligned_cols=113 Identities=15% Similarity=0.067 Sum_probs=59.0
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhh-----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELD-----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~-----~~~~~~~~ 1364 (1880)
.++....+.+.|..|+.+++...... +......-.+..+|...|+.+.+...++....... .......+
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 45666667777777777776554321 22234445566666666666666665553321100 01122235
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHH
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELN 1411 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~ 1411 (1880)
.+.|+|++|+..|++.+...++. ......+..++...|+++.-.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~ 123 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAI 123 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHccHHHHH
Confidence 56666777777666655433221 223344455555556555443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.77 E-value=1.3 Score=51.17 Aligned_cols=161 Identities=11% Similarity=0.079 Sum_probs=97.9
Q ss_pred HHHHHHHhccchhhhhhhccchhccccccc--CCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch---------hh--
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNR--MDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE---------LD-- 1356 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~--~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~---------~~-- 1356 (1880)
.++......|.|.+|+.+++.......... ..+........|..+|..+|+.+.+...++.+... ..
T Consensus 32 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 111 (311)
T 3nf1_A 32 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVA 111 (311)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 456666677778888877766553210000 01122345678899999999999998877643221 00
Q ss_pred --hhhcHHHHHHhcCHHHHHHHHHHHHhcc-----CCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcC-------CCC
Q 000194 1357 --VQLKESWYEKLQRWDDALKAYTNKASQA-----SNPHIVLEATLGRMRCLAALARWEELNNLCKEYWT-------PAE 1422 (1880)
Q Consensus 1357 --~~~~~~~~e~lg~W~~Al~~y~~~~~~~-----~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~-------~~~ 1422 (1880)
....+..|...|+|++|+.+|++.+... .++.........+-.|+..+|+|+.-....+.... ...
T Consensus 112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 1123345889999999999999987542 22222234556778889999999876655543211 111
Q ss_pred hHHHHhHHHHHHHHHHHcCChhhHHHHHh
Q 000194 1423 PAARLEMAPMAANAAWNMGEWDQMAEYVS 1451 (1880)
Q Consensus 1423 ~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~ 1451 (1880)
+ .........+.+...+|+|+.-..+..
T Consensus 192 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 219 (311)
T 3nf1_A 192 P-NVAKTKNNLASCYLKQGKFKQAETLYK 219 (311)
T ss_dssp H-HHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2 122233345667788888887766544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.76 E-value=6.2 Score=44.31 Aligned_cols=168 Identities=11% Similarity=-0.000 Sum_probs=109.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|...+....+.|+++.|...+.++...+|. .+.+.+..+.+++..|+ ..+|+..+++.+...
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~ 107 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD----------MPEVFNYLGIYLTQAGN---FDAAYEAFDSVLELD 107 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC----------cHHHHHHHHHHHHHccC---HHHHHHHHHHHHhcC
Confidence 45788999999999999999999999998877552 36777888899999995 689999999877532
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
.. . ..++..+|.-.... ...++.+..|+++++.+|+....+. |...+...
T Consensus 108 ~~------------------~----~~~~~~la~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~- 157 (275)
T 1xnf_A 108 PT------------------Y----NYAHLNRGIALYYG------GRDKLAQDDLLAFYQDDPNDPFRSL-WLYLAEQK- 157 (275)
T ss_dssp TT------------------C----THHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHH-
T ss_pred cc------------------c----cHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHh-
Confidence 10 0 12333444443332 2357889999999999998764333 22222110
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
.-...|+..|-+++...+ .. .....+..+.+..++..+..+.+.+.+..-|
T Consensus 158 -------------~~~~~A~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 158 -------------LDEKQAKEVLKQHFEKSD-----KE--QWGWNIVEFYLGNISEQTLMERLKADATDNT 208 (275)
T ss_dssp -------------HCHHHHHHHHHHHHHHSC-----CC--STHHHHHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred -------------cCHHHHHHHHHHHHhcCC-----cc--hHHHHHHHHHHHhcCHHHHHHHHHHHhcccc
Confidence 123466777767666532 11 1234456666666666556666666665544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=90.72 E-value=7.3 Score=37.51 Aligned_cols=131 Identities=19% Similarity=0.225 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCC
Q 000194 1570 ETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSC 1649 (1880)
Q Consensus 1570 ~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~ 1649 (1880)
..|...+....+.|+++.|...+.++....+. .+......+......|+ ..+|+..+++.+.....
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~- 67 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR----------SAEAWYNLGNAYYKQGD---YDEAIEYYQKALELDPR- 67 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTT-
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc----------chhHHHHHHHHHHHhcC---HHHHHHHHHHHHHHCCC-
Confidence 46888899999999999999999888765432 35666777888888885 67899998886643110
Q ss_pred CccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhh
Q 000194 1650 PVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHY 1729 (1880)
Q Consensus 1650 ~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~ 1729 (1880)
...++..+|...... ...++..+.|..+.+..|+...+|..+|.....
T Consensus 68 ---------------------~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----- 115 (136)
T 2fo7_A 68 ---------------------SAEAWYNLGNAYYKQ------GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----- 115 (136)
T ss_dssp ---------------------CHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-----
T ss_pred ---------------------chHHHHHHHHHHHHh------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-----
Confidence 022344445444332 346788999999999999999999888876542
Q ss_pred hccCCCCchhhHHHHHHHHHHHHHhh
Q 000194 1730 TLRGLPSVAPQFVVHAVTGYFHSIAC 1755 (1880)
Q Consensus 1730 ~~~~~~~~~~~~~~~ai~~y~~si~~ 1755 (1880)
. .-...|+..|-+++..
T Consensus 116 --~-------~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 116 --Q-------GDYDEAIEYYQKALEL 132 (136)
T ss_dssp --T-------TCHHHHHHHHHHHHHH
T ss_pred --H-------ccHHHHHHHHHHHHcc
Confidence 1 1234677777776655
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=90.46 E-value=1.6 Score=44.70 Aligned_cols=105 Identities=13% Similarity=-0.004 Sum_probs=79.6
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++...|...+....+.|+++.|...+.++...+|. .+...+..+..+...|+ ..+|+..+++.+.-.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~----------~~~~~~~lg~~~~~~g~---~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY----------NVDYIMGLAAIYQIKEQ---FQQAADLYAVAFALG 100 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHHcc---HHHHHHHHHHHHhhC
Confidence 45889999999999999999999999999988763 47778888888888995 689999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG 1712 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~ 1712 (1880)
... ..---.++.||..+|+ .++.+..|++|++++|+..
T Consensus 101 P~~---------------~~~~~~lg~~~~~lg~-------------~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KND---------------YTPVFHTGQCQLRLKA-------------PLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSC---------------CHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCCCHH
T ss_pred CCC---------------cHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCHH
Confidence 110 1111235666655555 4788899999999998654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=90.39 E-value=14 Score=42.12 Aligned_cols=203 Identities=10% Similarity=-0.038 Sum_probs=118.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....|..-+....+.|+++.|...+.+.....+... . . .....+.+..+.+....|+ ..+|+..+++.+....
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~-~-~--~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~~ 146 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP-E-F--QQFLQWQYYVAAYVLKKVD---YEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCH-H-H--HHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCCh-h-H--HHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHh
Confidence 356777788888999999999999888776543210 0 0 0001222333444455563 6789998887653211
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhh---cccch----HHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQC---ATKWG----KAWHSWAL 1720 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~---~~~~~----k~w~~wA~ 1720 (1880)
. ..+....+.++..+|.-.... ...++.+.+|++|.++ .++.. .+|+..|.
T Consensus 147 ~----------------~~~~~~~~~~~~~lg~~y~~~------~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~ 204 (293)
T 2qfc_A 147 T----------------GIDVYQNLYIENAIANIYAEN------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAK 204 (293)
T ss_dssp C----------------SSCTTHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred c----------------CCchHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHH
Confidence 1 112233577788888777654 3578999999999854 33322 45555555
Q ss_pred HHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcch-HHhHHHHHHHHHhcCCcHHH-HHHHHhcc---cC
Q 000194 1721 FNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDS-LQDILRLLTLWFNHGATEEV-QIALQKGF---AH 1795 (1880)
Q Consensus 1721 ~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~-~q~~~RlLtLwf~~g~~~~v-~~~~~~~~---~~ 1795 (1880)
.+.. .+ -...|+..|-+++.+... .+.... -.....+=.+++..|+.++. ...+++.+ ..
T Consensus 205 ~y~~-------~~-------~y~~Al~~~~kal~~~~~-~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~ 269 (293)
T 2qfc_A 205 ALYL-------DS-------RYEESLYQVNKAIEISCR-INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHH-------TT-------CHHHHHHHHHHHHHHHHH-TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-------Hh-------hHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 5442 11 234778888887776421 111222 23345555667787877665 44455433 45
Q ss_pred CChhhHHHHHHHHHHhccC
Q 000194 1796 VNINTWLVVLPQIIARIHS 1814 (1880)
Q Consensus 1796 ip~~~wl~~ipQLiaRi~~ 1814 (1880)
+....+..-+-++|+|+.|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~ 288 (293)
T 2qfc_A 270 LEMHAYKEALVNKISRLEH 288 (293)
T ss_dssp TTCHHHHHHHHHHHHHC--
T ss_pred hCcHhhHHHHHHHHHHHhh
Confidence 5566667788888888844
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=90.32 E-value=1.8 Score=47.03 Aligned_cols=143 Identities=14% Similarity=0.149 Sum_probs=87.5
Q ss_pred hhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHH
Q 000194 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHS 580 (1880)
Q Consensus 501 ~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~ 580 (1880)
+....++..+..++...||..|+..++++ . . ..++++.+-.....|+.+.||..
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--~-----------------------~~~~L~~ir~~va~D~~WrVre~ 123 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--K-----------------------DKEILIFMRDEVSKDNNWRVQEV 123 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--T-----------------------SHHHHHHHHHTGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--C-----------------------cHHHHHHHHHHhCCCCCccHHHH
Confidence 34455666777888889998888765554 1 1 12233333332467888999988
Q ss_pred HHHhccCCCCcchhh--ccHh-hHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChH
Q 000194 581 IFSSLYGNRGFDDFL--AQAD-CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNK 657 (1880)
Q Consensus 581 ~l~~l~~~~~fd~~L--~~~~-~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~ 657 (1880)
+..++. +++ ..++ .++.+..-..|+++.||+.|+..+---+.. |.. . .-...+...+..+..+ ++.-
T Consensus 124 lA~a~~------~~~~~~~pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~-k-~dp~~ll~iL~~L~~D-~s~y 193 (240)
T 3l9t_A 124 LAKAFD------EFCKKIEYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYF-K-ENPNEAIRRIADLKED-VSEY 193 (240)
T ss_dssp HHHHHH------HHHHHHCTTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTT-T-TCHHHHHHHHHTTTTC-SCHH
T ss_pred HHHHHH------HHHHhcCHHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chh-h-cCHHHHHHHHHHhcCC-hHHH
Confidence 877764 222 1223 466777788899999999888875322221 211 0 1122344556666666 6677
Q ss_pred hHHHHHHHHHHHHHhCcccccC
Q 000194 658 CREESAKLLGCLIRNCERLIRP 679 (1880)
Q Consensus 658 ~r~~a~~~L~~l~~~~~~~~~p 679 (1880)
+|..-++.|-++.+..|+.+..
T Consensus 194 VrKSVan~LrD~SK~~Pd~V~~ 215 (240)
T 3l9t_A 194 VRKSVGNALRDISKKFPDLVKI 215 (240)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhhCHHHHHH
Confidence 7877888888888877755433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=90.28 E-value=2.3 Score=43.62 Aligned_cols=116 Identities=10% Similarity=0.001 Sum_probs=72.9
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~~~~ 1364 (1880)
.+|......+.|..|+.+++...... +......-.+..+|..+|+.+.+...++.+... . . ....+..+
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELN------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 56777788888999998887765432 233556677888888899988888777643321 1 0 11223457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHH
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNN 1412 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~ 1412 (1880)
.++|++++|..+|++.+...++... .....+....+.+.|+++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~~~~~~~~~~~~~~~~A~~ 138 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKD-AKMKYQECNKIVKQKAFERAIA 138 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999888765443221 1112344444556666655443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=90.26 E-value=2.3 Score=42.66 Aligned_cols=107 Identities=15% Similarity=0.077 Sum_probs=77.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++...|...+....+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..++..+...
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY----------DARYFLGLGACRQSLGL---YEQALQSYSYGALMD 82 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc----------cHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcC
Confidence 45788999999999999999999999998877653 46777888888888885 689999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKA 1714 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~ 1714 (1880)
... ....-.++.+|..+|+ .++....|+.+++++|+....
T Consensus 83 p~~---------------~~~~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 83 INE---------------PRFPFHAAECHLQLGD-------------LDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp TTC---------------THHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHHHTCGGG
T ss_pred CCC---------------cHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCcch
Confidence 100 0111234555554444 477889999999998866543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=90.26 E-value=1.3 Score=58.34 Aligned_cols=134 Identities=16% Similarity=-0.013 Sum_probs=101.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++...|+..+....+.|+++.|...+.++...+|. .+...+..+..+...|+ ..+|+..+++.+...
T Consensus 431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~ 497 (681)
T 2pzi_A 431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW----------RWRLVWYRAVAELLTGD---YDSATKHFTEVLDTF 497 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHS
T ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc----------hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 45788999999999999999999999998877552 46788888888989995 689999999876532
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
... ..-...++.++..+|+|. + +..|++|++++|+...+|+..|....+.
T Consensus 498 P~~---------------~~~~~~lg~~~~~~g~~~-------------~-~~~~~~al~~~P~~~~a~~~lg~~~~~~- 547 (681)
T 2pzi_A 498 PGE---------------LAPKLALAATAELAGNTD-------------E-HKFYQTVWSTNDGVISAAFGLARARSAE- 547 (681)
T ss_dssp TTC---------------SHHHHHHHHHHHHHTCCC-------------T-TCHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred CCC---------------hHHHHHHHHHHHHcCChH-------------H-HHHHHHHHHhCCchHHHHHHHHHHHHHc-
Confidence 110 111234677777777663 4 5789999999999999999999875541
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
+ -...|+..|-+++.+.
T Consensus 548 ------g-------~~~~A~~~~~~al~l~ 564 (681)
T 2pzi_A 548 ------G-------DRVGAVRTLDEVPPTS 564 (681)
T ss_dssp ------T-------CHHHHHHHHHTSCTTS
T ss_pred ------C-------CHHHHHHHHHhhcccC
Confidence 1 2347888998888774
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=90.12 E-value=3.3 Score=42.08 Aligned_cols=106 Identities=14% Similarity=0.052 Sum_probs=77.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++...|...+....+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+.-.
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY----------DSRFFLGLGACRQAMGQ---YDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc----------cHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcC
Confidence 45788999999999999999999999998877653 46777888888888885 689999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGK 1713 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k 1713 (1880)
... ....-.++.+|..+|+ .++....|.++++++|+...
T Consensus 86 p~~---------------~~~~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 86 IXE---------------PRFPFHAAECLLQXGE-------------LAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp TTC---------------THHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHHTTCGG
T ss_pred CCC---------------chHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHCcCCCc
Confidence 100 0111223444444444 57788999999999886543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.06 E-value=5.1 Score=42.76 Aligned_cols=126 Identities=10% Similarity=-0.064 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCC------ChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHG------PPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~------~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~ 1642 (1880)
...|...+..+.+.|+++.|...+.++....+........... ...+.+..+.+++..|+ ..+|+..++..
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a 114 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD---YPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence 6778999999999999999999999988775531100000000 01566777888888884 68899999887
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000194 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1880)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1880)
+.... ..++++..+|.-...+ ...++.+..|+++++++|+...+|..++...
T Consensus 115 l~~~p----------------------~~~~~~~~lg~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 115 LKIDK----------------------NNVKALYKLGVANMYF------GFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHST----------------------TCHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHhCc----------------------ccHHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 65311 0123344445444433 2357888999999999999999999988776
Q ss_pred HHH
Q 000194 1723 TAV 1725 (1880)
Q Consensus 1723 ~~~ 1725 (1880)
..+
T Consensus 167 ~~~ 169 (198)
T 2fbn_A 167 NKL 169 (198)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=90.02 E-value=6.2 Score=38.23 Aligned_cols=114 Identities=17% Similarity=0.090 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCC
Q 000194 1571 TWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCP 1650 (1880)
Q Consensus 1571 ~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~ 1650 (1880)
.+...+....+.|+++.|...+.++....|... ..+.+.+..+...+..|+ ..+|+..++..+.....
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~~~~lg~~~~~~~~---~~~A~~~~~~~~~~~p~-- 71 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGV-------YTPNALYWLGESYYATRN---FQLAEAQFRDLVSRYPT-- 71 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST-------THHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc-------ccHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHCCC--
Confidence 466788889999999999999999887655310 113677888889999995 68999999987764211
Q ss_pred ccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHH
Q 000194 1651 VIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWA 1719 (1880)
Q Consensus 1651 ~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA 1719 (1880)
......++..+|...... ...++....|+.+++.+|+...++...+
T Consensus 72 -----------------~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 72 -----------------HDKAAGGLLKLGLSQYGE------GKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp -----------------STTHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred -----------------CcccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 112345566666665554 3468899999999999998876655444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=89.97 E-value=3.4 Score=47.51 Aligned_cols=167 Identities=11% Similarity=-0.009 Sum_probs=113.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+.+.++..+..+...|+++.|...+.+++..+|. .+...+..+.++...|+ ..+|+..++.....-
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~----------~~~a~~~la~~~~~~g~---~~~A~~~l~~~~~~~ 181 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ----------NGEIGLLLAETLIALNR---SEDAEAVLXTIPLQD 181 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS----------CHHHHHHHHHHHHHTTC---HHHHHHHHTTSCGGG
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc----------chhHHHHHHHHHHHCCC---HHHHHHHHHhCchhh
Confidence 45678999999999999999999999999887663 47888999999999995 688998887643210
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
.+. ... .+..+.-+.... ..++.+..|+++++.+|+...+|+.+|......
T Consensus 182 -------------------p~~-~~~--~~~~~~~l~~~~------~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~- 232 (287)
T 3qou_A 182 -------------------QDT-RYQ--GLVAQIELLXQA------ADTPEIQQLQQQVAENPEDAALATQLALQLHQV- 232 (287)
T ss_dssp -------------------CSH-HHH--HHHHHHHHHHHH------TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred -------------------cch-HHH--HHHHHHHHHhhc------ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc-
Confidence 000 001 111111111110 123467889999999999999999999875531
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcc-hHHhHHHHHHHHHhcCCcHHHHHHHHhcc
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDD-SLQDILRLLTLWFNHGATEEVQIALQKGF 1793 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~-~~q~~~RlLtLwf~~g~~~~v~~~~~~~~ 1793 (1880)
.-...|+..|.+.+...+ .+ .-+.-.++..++-..|...+.....++.+
T Consensus 233 -------------g~~~~A~~~l~~~l~~~p-----~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 233 -------------GRNEEALELLFGHLRXDL-----TAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp -------------TCHHHHHHHHHHHHHHCT-----TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -------------ccHHHHHHHHHHHHhccc-----ccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 134478999999998752 22 13345666777777777666555555443
|
| >1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 | Back alignment and structure |
|---|
Probab=89.92 E-value=31 Score=39.40 Aligned_cols=168 Identities=14% Similarity=0.186 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHhhcCc---cchhchHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHHHHhhhchhhHHHHHHHHHHHHH
Q 000194 170 RFAAVLILKEMAENAST---VFNVHVAEFVDAIWVALRDPTLAVRERA-VEALRACLRVIEKRETRWRVQWYYRMFEATQ 245 (1880)
Q Consensus 170 R~aA~~~l~~la~~~p~---~l~~~l~~i~~~i~~~l~D~~~~VR~aA-~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~ 245 (1880)
|..-+.++....+.+++ .....++.+++.++.--++..|..|++- ...+..+..-+.+.-....+..+..+++.+.
T Consensus 46 KkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL 125 (321)
T 1w9c_A 46 KRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTL 125 (321)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44555555556666555 3456778888888777776767777654 3333334444443334466778888888888
Q ss_pred hhccCC--CChhHHHHHHHHHHHHHHcchhhhH----HHHHHHHHHHHHHhhcchhHHHHHHHHHhHhH----hh--hCh
Q 000194 246 DGLGRN--APVHSIHGSLLAVGELLRNTGEFMM----SRYREVAEIVLRYLEHRDRLVRLSITSLLPRI----AH--FLR 313 (1880)
Q Consensus 246 ~~l~~~--~~~~~~~~al~~l~~ll~~~~~~~~----~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~l----a~--~~~ 313 (1880)
+-+..+ +-+|.|.+-...|.++..+|-+.+. +.+..+++.++-..+|.++.|....+.++-.+ +. ...
T Consensus 126 ~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~ 205 (321)
T 1w9c_A 126 NMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAA 205 (321)
T ss_dssp HHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHH
Confidence 877653 2368899988899999886544322 57788899999889999999998876655443 32 112
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCC
Q 000194 314 DRFVTNYLKICMNHILTVLRIPAE 337 (1880)
Q Consensus 314 ~~f~~~yl~~~~~~Ll~~L~~~~~ 337 (1880)
..|.+.|+-.++..++.++.+...
T Consensus 206 ~~Fy~~fy~~il~~if~VlTDs~H 229 (321)
T 1w9c_A 206 QSFYQTYFCDILQHIFSVVTDTSH 229 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCchh
Confidence 356667888888888888876543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.87 E-value=1.7 Score=42.48 Aligned_cols=107 Identities=14% Similarity=0.102 Sum_probs=63.3
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1880)
.++....+.+.|..|+.+++...... +........+..+|..+|+.+.+...++.+... .. ....+..|
T Consensus 21 ~~~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 21 NKGNECFQKGDYPQAMKHYTEAIKRN------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHTTC------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 45666777788888888777665422 233456667777888888888777766643221 00 11223346
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhh
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALA 1405 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg 1405 (1880)
.+.|+|++|...|++.+...++. .+....+-.|+..+|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSC---KEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGG---THHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhc
Confidence 77888888888887776543221 233344444554443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=89.87 E-value=5.2 Score=51.25 Aligned_cols=139 Identities=16% Similarity=0.118 Sum_probs=103.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++...|...+.+..+.|+++.|...+.++...+|. .+...+..+..+...|+ ..+|+..+++.+...
T Consensus 21 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~ 87 (568)
T 2vsy_A 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG----------HPEAVARLGRVRWTQQR---HAEAAVLLQQASDAA 87 (568)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcC
Confidence 45788999999999999999999999999887652 46778888999999995 689999999876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
. . .+.++..+|...... ...++....|+++.+.+|+...+|..+|......-
T Consensus 88 p------------------~----~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 88 P------------------E----HPGIALWLGHALEDA------GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139 (568)
T ss_dssp T------------------T----CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred C------------------C----CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 1 0 133445555554443 24678899999999999999999999987765420
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhcc
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAA 1757 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~ 1757 (1880)
+ -.-...|+..|-+++..++
T Consensus 140 ~-----------~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 140 D-----------WRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp C-----------CTTHHHHHHHHHHHHHHTC
T ss_pred c-----------cccHHHHHHHHHHHHhcCC
Confidence 0 0123468888888888753
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=89.76 E-value=2.7 Score=50.62 Aligned_cols=160 Identities=13% Similarity=0.139 Sum_probs=97.8
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhh------------hh
Q 000194 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELD------------VQ 1358 (1880)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~------------~~ 1358 (1880)
.|......|.|.+|+.+.+...................-.|..+|..+|+++.+...+..+-.... ..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 577788889999999888776542211100011234566889999999999998877764332100 11
Q ss_pred hcHHHHHHhcCHHHHHHHHHHHHhcc---CCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcC-----CCChHHHHhHH
Q 000194 1359 LKESWYEKLQRWDDALKAYTNKASQA---SNPHIVLEATLGRMRCLAALARWEELNNLCKEYWT-----PAEPAARLEMA 1430 (1880)
Q Consensus 1359 ~~~~~~e~lg~W~~Al~~y~~~~~~~---~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~-----~~~~~~~~~~~ 1430 (1880)
..+..|..+|+|++|+..|++.+... .++.........+-.|+..+|+++.-..+.+.... ...+.. ....
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL-PQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH-HHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH-HHHH
Confidence 22346889999999999999987532 11111122445677788899999876665543221 110211 2223
Q ss_pred HHHHHHHHHcCChhhHHHHHh
Q 000194 1431 PMAANAAWNMGEWDQMAEYVS 1451 (1880)
Q Consensus 1431 ~~~a~aaw~l~~Wd~~~~~~~ 1451 (1880)
...+.+.+.+|+++.-.++..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~ 288 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHS 288 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHH
Confidence 345567778888877665544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.46 E-value=2.1 Score=41.80 Aligned_cols=105 Identities=12% Similarity=-0.028 Sum_probs=73.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|+..+....+.|+++.|...+.++...+|. .+...+..+.++...|+ ..+|+..+++.+.--.
T Consensus 16 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~P 82 (121)
T 1hxi_A 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPE----------REEAWRSLGLTQAENEK---DGLAIIALNHARMLDP 82 (121)
T ss_dssp GCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC
Confidence 3456889999999999999999999999887663 46778888889888885 6889999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGK 1713 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k 1713 (1880)
. ...-...++.++...|+| ++.+..|+++++.+|++.+
T Consensus 83 ~---------------~~~~~~~la~~~~~~g~~-------------~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 83 K---------------DIAVHAALAVSHTNEHNA-------------NAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp T---------------CHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHC-------
T ss_pred C---------------CHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHhCcCCCC
Confidence 0 011123466777777765 5678899999999887643
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=89.46 E-value=2.9 Score=47.19 Aligned_cols=126 Identities=10% Similarity=0.089 Sum_probs=74.8
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccc--cCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch---------hh--
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSN--RMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE---------LD-- 1356 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~--~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~---------~~-- 1356 (1880)
.++.+....+.|..|+.+++......... ...+........|..+|..+|+.+.+...+..+... ..
T Consensus 48 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 127 (283)
T 3edt_B 48 ILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVA 127 (283)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 44555566666777776666544321000 001112345667888999999999888777643221 10
Q ss_pred --hhhcHHHHHHhcCHHHHHHHHHHHHhcc-----CCCchhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000194 1357 --VQLKESWYEKLQRWDDALKAYTNKASQA-----SNPHIVLEATLGRMRCLAALARWEELNNLCK 1415 (1880)
Q Consensus 1357 --~~~~~~~~e~lg~W~~Al~~y~~~~~~~-----~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1880)
....+..|...|+|++|+.+|++.+... ++..........+-+|+..+|+|+.-....+
T Consensus 128 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 193 (283)
T 3edt_B 128 KQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYK 193 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1122345788899999999998877531 1122223455677788888899876655443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=89.00 E-value=2.2 Score=44.11 Aligned_cols=110 Identities=14% Similarity=0.002 Sum_probs=68.2
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1880)
.++....+.+.|..|+.+++..+... ++.....-.+..+|..+|+.+.+.-.++.+... .. ....+..|
T Consensus 16 ~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 16 SEGNAAMARKEYSKAIDLYTQALSIA------PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45667777788888888777665432 334566677888888888888877766643221 10 11233457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhC
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALAR 1406 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~ 1406 (1880)
.++|+|++|+.+|++.+...++... .-...++.+|...+++
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~l~~~~~~~~~ 130 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGS-DAMKRGLETTKRKIEE 130 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCC-HHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHHHHHH
Confidence 7888888888888887765443321 1134556666555554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.98 E-value=6.3 Score=45.32 Aligned_cols=190 Identities=11% Similarity=0.059 Sum_probs=111.2
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHh
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL-GEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~-g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
....|...+.+.++.|+++.|...+.++..+.+.... . ..........+.++..+ |+ ..+|+..+++.+.-.
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~--~--~~~a~~~~~lg~~~~~~lg~---~~~A~~~~~~Al~~~ 148 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ--F--RRGANFKFELGEILENDLHD---YAKAIDCYELAGEWY 148 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--H--HHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC--H--HHHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHH
Confidence 3678889999999999999999998887765432110 0 00123344556666665 74 688999998866532
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchH-------HHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGK-------AWHSWA 1719 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k-------~w~~wA 1719 (1880)
.. .......+.++..+|.-...+ ...++.+..|+++++.+|+... +|...|
T Consensus 149 ~~----------------~~~~~~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 149 AQ----------------DQSVALSNKCFIKCADLKALD------GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HH----------------TTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred Hh----------------CCChHHHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 21 112234577888888888765 3589999999999999886543 344444
Q ss_pred HHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChh
Q 000194 1720 LFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNIN 1799 (1880)
Q Consensus 1720 ~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~ 1799 (1880)
..... . .-...|+..|-+++.+.+.... ......+..+.. .++.++..+..+++...-..+...
T Consensus 207 ~~~~~-------~-------g~~~~A~~~~~~al~l~p~~~~-~~~~~~l~~l~~-~~~~~~~~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 207 LCQLA-------A-------TDAVAAARTLQEGQSEDPNFAD-SRESNFLKSLID-AVNEGDSEQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp HHHHH-------T-------TCHHHHHHHHHGGGCC----------HHHHHHHHH-HHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHH-------c-------CCHHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHH-HHHcCCHHHHHHHHHHhccCCccH
Confidence 33221 1 1345789999998887532110 011111222333 345555555556665543333444
Q ss_pred hHH
Q 000194 1800 TWL 1802 (1880)
Q Consensus 1800 ~wl 1802 (1880)
.|.
T Consensus 271 ~~~ 273 (292)
T 1qqe_A 271 KWK 273 (292)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=88.86 E-value=12 Score=41.90 Aligned_cols=149 Identities=13% Similarity=0.008 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhhcCC--cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCC
Q 000194 1551 VWQALLAVRALVLPP--TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGE 1628 (1880)
Q Consensus 1551 ~w~~iL~~R~~vl~~--~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~ 1628 (1880)
..+.-+....-+..+ ......|...+.+....|+++.|...+.++..........+. ...+.+....+.+++..|+
T Consensus 23 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 100 (283)
T 3edt_B 23 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDH--PAVAATLNNLAVLYGKRGK 100 (283)
T ss_dssp HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC--HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcc--hHHHHHHHHHHHHHHHhcc
Confidence 344444444444322 245788999999999999999999998887754210000000 0124556677888888885
Q ss_pred cchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhh-
Q 000194 1629 DLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQC- 1707 (1880)
Q Consensus 1629 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~- 1707 (1880)
..+|+..+++.+...... ...+....+.++..+|...... ...++....|+++++.
T Consensus 101 ---~~~A~~~~~~al~~~~~~--------------~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 101 ---YKEAEPLCKRALEIREKV--------------LGKFHPDVAKQLNNLALLCQNQ------GKAEEVEYYYRRALEIY 157 (283)
T ss_dssp ---HHHHHHHHHHHHHHHHHH--------------HCTTCHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHH--------------cCCCChHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHH
Confidence 688999998876543210 0011234567777777776654 3578899999999888
Q ss_pred -------cccchHHHHHHHHHHHH
Q 000194 1708 -------ATKWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1708 -------~~~~~k~w~~wA~~n~~ 1724 (1880)
.+....+|..+|..+..
T Consensus 158 ~~~~~~~~~~~~~~~~~la~~~~~ 181 (283)
T 3edt_B 158 ATRLGPDDPNVAKTKNNLASCYLK 181 (283)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHH
Confidence 66677788888877654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.76 E-value=2.3 Score=41.51 Aligned_cols=88 Identities=11% Similarity=0.011 Sum_probs=54.1
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1880)
.+|....+.|.|..|+.+++...... ++.......+..+|..+|+.+.+.-.++.+... .+ .-..+..|
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRA------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45777778888888888887665432 233456666777777777777766655533211 00 11223346
Q ss_pred HHhcCHHHHHHHHHHHHhc
Q 000194 1365 EKLQRWDDALKAYTNKASQ 1383 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~ 1383 (1880)
.++|+|++|+..|++.+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6777777777777776654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=88.73 E-value=15 Score=39.91 Aligned_cols=191 Identities=10% Similarity=-0.016 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
...|...+....+.|+++.|...+.++....|... ..+...+..+...+..|+ ..+|+..+++++.....
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~a~~~lg~~~~~~~~---~~~A~~~~~~~l~~~P~ 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP-------YSQQVQLDLIYAYYKNAD---LPLAQAAIDRFIRLNPT 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-------THHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-------HHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHCcC
Confidence 45678888999999999999999999887655310 124677888899999995 68999999998864321
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhh-----hHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH--
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGS-----WKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF-- 1721 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~-----w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~-- 1721 (1880)
.+.. ..-.-.++.++..+|. |.............++.+..|+.+++.+|+...+|......
T Consensus 74 ~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 74 HPNI------------DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF 141 (225)
T ss_dssp CTTH------------HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred CCcH------------HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH
Confidence 1000 0001224444444331 10000000112457889999999999999988776533221
Q ss_pred -HHH-------HHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHh
Q 000194 1722 -NTA-------VMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQK 1791 (1880)
Q Consensus 1722 -n~~-------~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~ 1791 (1880)
... +...+.. ..-...|+..|-+.+...+ +.....+...++-..++..|...+..+.++.
T Consensus 142 ~~~~~~~~~~~~a~~~~~-------~~~~~~A~~~~~~~l~~~p---~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 142 LKDRLAKYEYSVAEYYTE-------RGAWVAVVNRVEGMLRDYP---DTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHST---TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------cCcHHHHHHHHHHHHHHCc---CCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 111 0111111 1123578888888887642 1122335677888888888887766555543
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.72 E-value=9.6 Score=41.91 Aligned_cols=106 Identities=12% Similarity=0.056 Sum_probs=70.2
Q ss_pred HhhcccCCCh--HHHHHHHHHHHHHhhhCCCCchhHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCcc-chhc
Q 000194 116 RTVFEVKRDR--EILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTV-FNVH 191 (1880)
Q Consensus 116 ~~~l~~~~d~--~v~~~aa~~l~~L~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~-l~~~ 191 (1880)
..++. ++|. ++...|++++..|+..........++ ..++.+++.|.. .+...+..|+.+|+-|+.+.+.. ..-.
T Consensus 14 V~lL~-s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk~~I~ 91 (233)
T 3tt9_A 14 VSMLE-ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNKLEVA 91 (233)
T ss_dssp HHTCC-SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhC-CCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34443 4455 78888889998888642111222222 257777888865 45567888899999999764431 1111
Q ss_pred hHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHH
Q 000194 192 VAEFVDAIWVALR-DPTLAVRERAVEALRACLR 223 (1880)
Q Consensus 192 l~~i~~~i~~~l~-D~~~~VR~aA~~al~~~~~ 223 (1880)
=..-+|.++..|+ .++..+|+.|..||..+..
T Consensus 92 ~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~ 124 (233)
T 3tt9_A 92 ELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124 (233)
T ss_dssp HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence 1356788888887 4789999999988887753
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=88.71 E-value=37 Score=38.83 Aligned_cols=191 Identities=15% Similarity=0.172 Sum_probs=109.3
Q ss_pred HHHHhhcccCCChHHHHHHHHHHHHHhhh-CCCCc--hhHHHHHHHHHHhhh-cCCCcchhHHHHHHHHHHHHhhcC--c
Q 000194 113 NYMRTVFEVKRDREILVLASKVLGHLARA-GGAMT--ADEVEFQVKMALDWL-RGDRVEYRRFAAVLILKEMAENAS--T 186 (1880)
Q Consensus 113 ~~L~~~l~~~~d~~v~~~aa~~l~~L~~~-~g~~~--~~~v~~~~~~~~~~l-~~~~~~~~R~aA~~~l~~la~~~p--~ 186 (1880)
..|...++ .-|.+.++.++.++..+... .|+.. .+++... +.++.+| .+.....--.-+=.+|++.+.+-+ .
T Consensus 81 ~~Li~~l~-~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~gYe~~diAl~~G~mLRecir~e~la~ 158 (341)
T 1upk_A 81 STLVADLQ-LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGYESPEIALNCGIMLRECIRHEPLAK 158 (341)
T ss_dssp HHHHHTGG-GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHhcc-cCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHHH
Confidence 34455554 45789999999999998875 23322 2344431 2333333 222222122222245566554411 1
Q ss_pred -cch-hchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHH
Q 000194 187 -VFN-VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAV 264 (1880)
Q Consensus 187 -~l~-~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l 264 (1880)
.++ +++-.+ +.-+..|+-.|-..|...++.++.--..--...-...|..++.....-+.++ ....+.-|+..|
T Consensus 159 ~iL~~~~f~~f----F~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkRQSlKLL 233 (341)
T 1upk_A 159 IILWSEQFYDF----FRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSLKLL 233 (341)
T ss_dssp HHHHSGGGGHH----HHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHHHHH
T ss_pred HHhccHHHHHH----HHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHHHHHHHH
Confidence 222 233333 3566678888844444444444321000001122233555666655545555 488999999999
Q ss_pred HHHHHc--chhhhHHHHHH--HHHHHHHHhhcchhHHHHHHHHHhHhHhh
Q 000194 265 GELLRN--TGEFMMSRYRE--VAEIVLRYLEHRDRLVRLSITSLLPRIAH 310 (1880)
Q Consensus 265 ~~ll~~--~~~~~~~~~~~--i~~~ll~~~~~~~~~Vr~~~~~~i~~la~ 310 (1880)
|+++-. ....|..|+.+ -+..++.++++++..||-.+.++....++
T Consensus 234 gelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 234 GELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 999883 44567777664 45577788899999999999999987665
|
| >3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* | Back alignment and structure |
|---|
Probab=87.97 E-value=16 Score=43.33 Aligned_cols=248 Identities=13% Similarity=0.121 Sum_probs=125.6
Q ss_pred hChHHHHHHHHH-HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHH-HHHHHhhcccCCChHHHHHHHHHH
Q 000194 58 LGGEAFSRFMDQ-LYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKF-SNYMRTVFEVKRDREILVLASKVL 135 (1880)
Q Consensus 58 ~~~~~~~~~~~~-l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~-~~~L~~~l~~~~d~~v~~~aa~~l 135 (1880)
..+....+|++. +..++.++++|+|+++|..--..+-.+.+...+ ..+.+++- .+.+-+.+-......-+..--+.+
T Consensus 117 f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~-~R~~Irk~innif~~fiye~e~~~GIaeLLeil 195 (403)
T 3fga_B 117 FQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINNIFYRFIYETEHHNGIAELLEIL 195 (403)
T ss_dssp CCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHH
T ss_pred cChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 334444555544 566678899999999998544433333222111 11223322 233332221121222233456677
Q ss_pred HHHhhh-CCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHH
Q 000194 136 GHLARA-GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERA 214 (1880)
Q Consensus 136 ~~L~~~-~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA 214 (1880)
|.+... .-.+..++..+..+.+++......-......-..++.+..+..|+...+.+..++ ..|..- ++.-.|
T Consensus 196 gsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LL-k~WP~t-ns~Kev---- 269 (403)
T 3fga_B 196 GSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALL-KYWPKT-HSPKEV---- 269 (403)
T ss_dssp HHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHH-HTCCSS-CHHHHH----
T ss_pred HHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHH-HhCCCC-CcHHHH----
Confidence 777664 1234456766666666665543333333333334445555666666554444443 223321 111111
Q ss_pred HHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHH----HHHHH-
Q 000194 215 VEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAE----IVLRY- 289 (1880)
Q Consensus 215 ~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~----~ll~~- 289 (1880)
.-|+.+.+++..-++.........++..+..++.++. -.+...|+...+.= .--..+.++...+++ .+.+.
T Consensus 270 -lFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~h-fqVAErAL~~wnNe--~i~~li~~n~~~IlPii~p~L~~~~ 345 (403)
T 3fga_B 270 -MFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPH-FQVAERALYYWNNE--YIMSLISDNAAKILPIMFPSLYRNS 345 (403)
T ss_dssp -HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSC-HHHHHHHHGGGGCH--HHHHHHHTTHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHhccH--HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1233333333333333445566778888888888875 45666666543110 000112223333333 34332
Q ss_pred hhcchhHHHHHHHHHhHhHhhhChhhH
Q 000194 290 LEHRDRLVRLSITSLLPRIAHFLRDRF 316 (1880)
Q Consensus 290 ~~~~~~~Vr~~~~~~i~~la~~~~~~f 316 (1880)
.+|=++.||..+..++..+-+.++.-|
T Consensus 346 ~~HWn~~v~~l~~~vlk~l~e~d~~lF 372 (403)
T 3fga_B 346 KTHWNKTIHGLIYNALKLFMEMNQKLF 372 (403)
T ss_dssp SCCSCHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHccCHHHHHHHHHHHHHHHHhCHHHH
Confidence 345689999999999999888877655
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=87.85 E-value=8.1 Score=39.53 Aligned_cols=124 Identities=18% Similarity=0.113 Sum_probs=78.5
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHH
Q 000194 1617 YAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPE 1696 (1880)
Q Consensus 1617 ~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~ 1696 (1880)
+.....+...|+ -.+|+...++-+.-....+.. .........+.+|.-+|.=+..+ ...++
T Consensus 15 ~~~G~~l~~~g~---~eeAi~~Y~kAL~l~p~~~~~----------~a~~~~~~~a~a~~n~g~al~~L------gr~~e 75 (159)
T 2hr2_A 15 LSDAQRQLVAGE---YDEAAANCRRAMEISHTMPPE----------EAFDHAGFDAFCHAGLAEALAGL------RSFDE 75 (159)
T ss_dssp HHHHHHHHHHTC---HHHHHHHHHHHHHHHTTSCTT----------SCCCHHHHHHHHHHHHHHHHHHT------TCHHH
T ss_pred HHHHHHHHHCCC---HHHHHHHHHHHHhhCCCCcch----------hhhhhccchHHHHHHHHHHHHHC------CCHHH
Confidence 445556667774 678999888876533211100 00011123344666666655554 24678
Q ss_pred HHHHHHHHHhh-------cccchHHH----HHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcch
Q 000194 1697 IIAAYRNATQC-------ATKWGKAW----HSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDS 1765 (1880)
Q Consensus 1697 i~~~y~~a~~~-------~~~~~k~w----~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~ 1765 (1880)
.+..|.+|+++ +|++.++| +..|.....+ .-...|+.+|-+++.+.+...|-..-
T Consensus 76 Al~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~l--------------gr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 76 ALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGL--------------GRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp HHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred HHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHC--------------CCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 88889999998 99999999 8887665432 23348999999999998766665555
Q ss_pred HHhHHHHH
Q 000194 1766 LQDILRLL 1773 (1880)
Q Consensus 1766 ~q~~~RlL 1773 (1880)
++.+-+.+
T Consensus 142 ~~~~~~~~ 149 (159)
T 2hr2_A 142 KERMMEVA 149 (159)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=87.85 E-value=14 Score=40.30 Aligned_cols=117 Identities=18% Similarity=0.129 Sum_probs=73.4
Q ss_pred ChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCC
Q 000194 1612 PPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDD 1691 (1880)
Q Consensus 1612 ~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~ 1691 (1880)
++...+..+..+...|+ -.+|+..+++++..... ......+++.+|......
T Consensus 3 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~~~~~~p~-------------------~~~~~~a~~~lg~~~~~~------ 54 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGN---WRQAITQLEALDNRYPF-------------------GPYSQQVQLDLIYAYYKN------ 54 (225)
T ss_dssp CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTT-------------------STTHHHHHHHHHHHHHHT------
T ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-------------------ChHHHHHHHHHHHHHHhc------
Confidence 46778888999999995 68999999998864221 112233444445444433
Q ss_pred CCHHHHHHHHHHHHhhcccchH---HHHHHHHHHHHHHH----hhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1692 ESIPEIIAAYRNATQCATKWGK---AWHSWALFNTAVMS----HYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1692 ~~~~~i~~~y~~a~~~~~~~~k---~w~~wA~~n~~~~~----~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
...++.+..|.++++.+|+... +|+.+|....+.-. .+...........-...|+..|-+.+...
T Consensus 55 ~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 126 (225)
T 2yhc_A 55 ADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY 126 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC
Confidence 2357888999999999998875 78888877654210 00000000011235668899999888764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=87.66 E-value=38 Score=43.82 Aligned_cols=227 Identities=10% Similarity=0.022 Sum_probs=128.8
Q ss_pred ccHHHHHHHHHHHHhcCChhHHH-HHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQAR-STLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~-~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~ 1645 (1880)
...+.|+.+++....+|..+.|. ..+.++.+.+|. .+.+.+.++++.+..|+ ...|-..+++.+..
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~----------s~~Lwl~~a~~ee~~~~---~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN----------SAVLAFSLSEQYELNTK---IPEIETTILSCIDR 407 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHH
Confidence 35899999999999999998886 888888876552 35677899999999995 46777777776654
Q ss_pred hcCCCc-cccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhh-cccchHHHHHHHHHHH
Q 000194 1646 LSSCPV-IQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQC-ATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1646 ~~~~~~-~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~-~~~~~k~w~~wA~~n~ 1723 (1880)
+..... .....+.. ......-..-.+.++..+++..... ...+.+.+.|..|.+. .+...+.|..||..-+
T Consensus 408 l~~~~~~~~~~~p~~-~~~~~~~~~~~~~vWi~y~~~erR~------~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~ 480 (679)
T 4e6h_A 408 IHLDLAALMEDDPTN-ESAINQLKSKLTYVYCVYMNTMKRI------QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY 480 (679)
T ss_dssp HHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH
T ss_pred HHHHhhhhhhccCcc-hhhhhhhccchHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 310000 00000000 0000000112345566666665543 2467888899999887 5455688888776532
Q ss_pred HHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh-----
Q 000194 1724 AVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI----- 1798 (1880)
Q Consensus 1724 ~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~----- 1798 (1880)
+. .++ ...|-+-|-+++... .+.-.-....+.+....|+...+...++.++...|.
T Consensus 481 ~~------~~d-------~e~Ar~ife~~Lk~~------p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~ 541 (679)
T 4e6h_A 481 HI------SKD-------TKTACKVLELGLKYF------ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 541 (679)
T ss_dssp TT------TSC-------CHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred Hh------CCC-------HHHHHHHHHHHHHHC------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 21 010 112333333333321 111222334444444557777777788888887772
Q ss_pred hhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCchhh
Q 000194 1799 NTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQAL 1838 (1880)
Q Consensus 1799 ~~wl~~ipQLiaRi~~~~~~v~~~l~~lL~~i~~~hPqa~ 1838 (1880)
..|..+ -+.=.+.+.. .-+..+..++.+.+|..-
T Consensus 542 ~lw~~~-~~fE~~~G~~-----~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 542 MIFQKV-IFFESKVGSL-----NSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHH-HHHHHHTCCS-----HHHHHHHHHHHHHSTTCC
T ss_pred HHHHHH-HHHHHHcCCH-----HHHHHHHHHHHHhCCCCc
Confidence 233333 2222233322 236666677778887743
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=87.65 E-value=6.6 Score=46.29 Aligned_cols=127 Identities=12% Similarity=-0.039 Sum_probs=90.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccc-----cCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENV-----RYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~-----~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~ 1642 (1880)
....|...+....+.|+++.|...+.++..+.|....... .......+.+..+.++...|+ ..+|+..+++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~---~~~A~~~~~~a 222 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA---FSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHH
Confidence 4678899999999999999999999999887654210000 000003566777888888885 68999999887
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000194 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1880)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1880)
+.... ..+++++.+|.-...+ ...++.+..|++|++++|+...+|..+|...
T Consensus 223 l~~~p----------------------~~~~a~~~lg~~~~~~------g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 223 LELDS----------------------NNEKGLSRRGEAHLAV------NDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHCT----------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHhCC----------------------CcHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 65311 0134455566555544 2468899999999999999999999998876
Q ss_pred HHH
Q 000194 1723 TAV 1725 (1880)
Q Consensus 1723 ~~~ 1725 (1880)
..+
T Consensus 275 ~~~ 277 (336)
T 1p5q_A 275 QRI 277 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=87.60 E-value=4.5 Score=48.62 Aligned_cols=160 Identities=9% Similarity=0.021 Sum_probs=98.8
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch----h--hh------h
Q 000194 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE----L--DV------Q 1358 (1880)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~----~--~~------~ 1358 (1880)
.|......|.|..|+.+.+....-.+.....+......-.|..+|..+|+++.+......+-.. . .. .
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 4667778889999998887654322111000111235567889999999999988776643221 1 11 1
Q ss_pred hcHHHHHHhcCHHHHHHHHHHHHhcc---CCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcC----CCChHHHHhHHH
Q 000194 1359 LKESWYEKLQRWDDALKAYTNKASQA---SNPHIVLEATLGRMRCLAALARWEELNNLCKEYWT----PAEPAARLEMAP 1431 (1880)
Q Consensus 1359 ~~~~~~e~lg~W~~Al~~y~~~~~~~---~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~----~~~~~~~~~~~~ 1431 (1880)
..+..|..+|+|++|++.|++.+... .++.........+-.|+..+|+++.-..+.+.... ..++.. .....
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHH
Confidence 23446899999999999999987532 12211123345667788899999876665544221 011222 23334
Q ss_pred HHHHHHHHcCChhhHHHHHh
Q 000194 1432 MAANAAWNMGEWDQMAEYVS 1451 (1880)
Q Consensus 1432 ~~a~aaw~l~~Wd~~~~~~~ 1451 (1880)
..+.+.+++|+++.-..+..
T Consensus 266 ~la~~~~~~g~~~~A~~~~~ 285 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIE 285 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 55678888999988776655
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=87.43 E-value=2.9 Score=40.47 Aligned_cols=107 Identities=15% Similarity=0.100 Sum_probs=67.4
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh-h-----------h
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL-D-----------V 1357 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~-~-----------~ 1357 (1880)
.+|......+.|..|+.+++...... +........+..+|...|+.+.+.-.+....... . .
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELD------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 46777778888888988887765432 2334566778888888888888877666432110 0 1
Q ss_pred hhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhC
Q 000194 1358 QLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALAR 1406 (1880)
Q Consensus 1358 ~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~ 1406 (1880)
...+..|.+.|+|++|...|++.+...+++ +....+-+|...+++
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRTP----DVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHH
Confidence 122335788888888888888877654332 233444455554443
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=87.43 E-value=0.44 Score=53.08 Aligned_cols=64 Identities=28% Similarity=0.322 Sum_probs=44.9
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHH
Q 000194 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1880)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1880)
...|+++.||..+...+. .+.|..+++|+++.||..++..++ ...+..
T Consensus 178 ll~D~d~~VR~aaa~~l~--------------~~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~ 225 (244)
T 1lrv_A 178 MTQDPEPEVRRIVASRLR--------------GDDLLELLHDPDWTVRLAAVEHAS------------------LEALRE 225 (244)
T ss_dssp STTCSSHHHHHHHHHHCC--------------GGGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHH
T ss_pred HHcCCCHHHHHHHHHhCC--------------HHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHH
Confidence 468999999999998763 122445678999999998888754 023444
Q ss_pred HhcCCCChHhHHHHHHHH
Q 000194 649 LEQSSADNKCREESAKLL 666 (1880)
Q Consensus 649 l~~~~~~~~~r~~a~~~L 666 (1880)
| .+ +++.+|+.+...|
T Consensus 226 L-~D-~~~~VR~aa~~~L 241 (244)
T 1lrv_A 226 L-DE-PDPEVRLAIAGRL 241 (244)
T ss_dssp C-CC-CCHHHHHHHHCCC
T ss_pred c-cC-CCHHHHHHHHHHh
Confidence 6 55 6888888776544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=87.37 E-value=4.9 Score=51.48 Aligned_cols=151 Identities=10% Similarity=-0.004 Sum_probs=90.7
Q ss_pred cCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccc
Q 000194 1582 SGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLT 1661 (1880)
Q Consensus 1582 ~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~ 1661 (1880)
+|+++.|...+.++...+| ..+...+..+..++..|+ ..+|+..+++.+....
T Consensus 2 ~g~~~~A~~~~~~al~~~p----------~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p-------------- 54 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP----------QDFVAWLMLADAELGMGD---TTAGEMAVQRGLALHP-------------- 54 (568)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHTTST--------------
T ss_pred CccHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC--------------
Confidence 4677788888877766544 246778888999999995 6899999988654210
Q ss_pred cccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhH
Q 000194 1662 TATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQF 1741 (1880)
Q Consensus 1662 ~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~ 1741 (1880)
..+.++..+|.-.... ...++....|++|++.+|+...+|+.+|....+. + -
T Consensus 55 --------~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------g-------~ 106 (568)
T 2vsy_A 55 --------GHPEAVARLGRVRWTQ------QRHAEAAVLLQQASDAAPEHPGIALWLGHALEDA-------G-------Q 106 (568)
T ss_dssp --------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-------T-------C
T ss_pred --------CCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-------C-------C
Confidence 0133455555555443 3468899999999999999999999998775541 1 2
Q ss_pred HHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhc---CCcHHHHHHHHhcc
Q 000194 1742 VVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNH---GATEEVQIALQKGF 1793 (1880)
Q Consensus 1742 ~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~---g~~~~v~~~~~~~~ 1793 (1880)
...|++.|-+++.+.+ ........+-.++... |+.++..+.+++.+
T Consensus 107 ~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 107 AEAAAAAYTRAHQLLP------EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 3578889999988752 2244556666677777 77766665555544
|
| >1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 | Back alignment and structure |
|---|
Probab=87.28 E-value=86 Score=41.16 Aligned_cols=335 Identities=10% Similarity=0.105 Sum_probs=174.3
Q ss_pred HHHHHHHHHhhhcCC-ChhhhhhHHHHHhHhhccc-cCcchhHHHHHHHHHHhhcccCCChH--------HHHHHHHHHH
Q 000194 67 MDQLYDRISGLLESN-DAAENLGALRAIDELIDVA-LGENASKVSKFSNYMRTVFEVKRDRE--------ILVLASKVLG 136 (1880)
Q Consensus 67 ~~~l~~~i~~l~~s~-~~~~r~~~i~ai~~Li~~~-~~~~~~~~~~~~~~L~~~l~~~~d~~--------v~~~aa~~l~ 136 (1880)
++.|..++...+++. ....=.+....|...+..+ .+.......++.+.+...+.|++.-. +...+..-..
T Consensus 230 ~~~iFt~~lr~l~~~~~~~~~~~~a~~IV~sl~~~~~~~~~~~L~~Li~~iesy~HPSN~G~Wt~~L~~Fl~~L~~~f~k 309 (799)
T 1vsy_4 230 MTFMFNRLQGHLRTDGQIHSYSRTVKPFVYAINGSKKDRFFEKLVSLAKAIETFIHPSNNGFWTKPNAKFVHAFIKSYHG 309 (799)
T ss_dssp HHHHHHHHHHHHHTTCCCSSHHHHHHHHHTTCCTTSCTTTHHHHHHHHHHHHHHHSTTCCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcCCccchHHHHHHHHHHcCCCCchHHHHHHHHHHHHHhcccCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 667777766666531 1111122333333334332 12235567788888888887765432 2223333334
Q ss_pred HHhhh--------C--CCCc----hhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC---ccchhchHHHHHHH
Q 000194 137 HLARA--------G--GAMT----ADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS---TVFNVHVAEFVDAI 199 (1880)
Q Consensus 137 ~L~~~--------~--g~~~----~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p---~~l~~~l~~i~~~i 199 (1880)
|+-.- + -.++ ..||+-..+-++-.+.+ ++.....-+..+++.||.-.| +.+ ++.+++.+
T Consensus 310 R~~~Er~~~~~~~p~~~~Lt~~~~~~fV~~l~p~~~~g~fS-K~~~~~~~~~~~l~~La~l~P~~~~lV---lP~vL~r~ 385 (799)
T 1vsy_4 310 RVKYEEDICARGVTNGICLTSFCHEEIVEIFLNIISLGSQN-KNPDIANYYISCFAYLLELDPSNAYLI---YDKILIDL 385 (799)
T ss_dssp HHHHHTTTTTTTCCCSSSCCHHHHHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHTCCTTHHHH---HHHHHHHH
T ss_pred HHHHhhccccCCCchhhcCCHHHHHHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHHhcCCCcccee---hHHHHHHH
Confidence 44321 1 0122 33555555555554443 444555667889999999888 664 45666666
Q ss_pred HHHhcC---CchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc-----
Q 000194 200 WVALRD---PTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT----- 271 (1880)
Q Consensus 200 ~~~l~D---~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~----- 271 (1880)
..+|.. .++.--.+|..++..+...+.... ..+ .++..++..++.|++.++ ..--..++..+..+...-
T Consensus 386 y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~-~yr-~hl~~lL~l~LpgID~ND-~~KT~~tl~fi~~i~s~ipi~d~ 462 (799)
T 1vsy_4 386 YDTLADQFINSRHRIISSLKQFTRVIRFIVMDK-LYR-VHITNVLSMLVSKLDMND-TNLTSNLINGIVSIAAFIPIQDL 462 (799)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTST-TGG-GHHHHHHHHHHHTCCSSC-HHHHHHHHHHHHHHHHTSCBCCC
T ss_pred HHHhccccccchhHHHHHHHHHHHHHHHHhcCc-ccH-HHHHHHHHHHhccCCccc-HHHHHHHHHHHHHHHHhcccccc
Confidence 677655 334444567888877777665332 233 367789999999998875 343445555555554310
Q ss_pred ---hhh--------------------------------------------hHHHHHHHHHHHHHHhhcc-hhHHHHHHHH
Q 000194 272 ---GEF--------------------------------------------MMSRYREVAEIVLRYLEHR-DRLVRLSITS 303 (1880)
Q Consensus 272 ---~~~--------------------------------------------~~~~~~~i~~~ll~~~~~~-~~~Vr~~~~~ 303 (1880)
++. +.......++.++.+++++ +..+-..+..
T Consensus 463 s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~ 542 (799)
T 1vsy_4 463 TGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQ 542 (799)
T ss_dssp CCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHH
T ss_pred CCcchhhhhhhhhhhhhhhhhhhhccccccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 011 1122222344455555532 2222233333
Q ss_pred HhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcch---HHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCC-----C
Q 000194 304 LLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDS---GFIALGEMAGALDGELFHYLPTITSHLREAIAPR-----R 375 (1880)
Q Consensus 304 ~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~---a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~-----~ 375 (1880)
++..+.....++..+..++.++.++.+.......+.. |..-++.++.+-++.+..++|.++..|+..+.+. .
T Consensus 543 ~~~~l~~~lS~~if~~~l~k~~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~~~~~~~p~l~~~i~~~i~~ga~s~rs 622 (799)
T 1vsy_4 543 TTMILQESMDDKIFNYFASLLNRNFWSNDSFKEKDPNYELVTIPLAALVRRNNGLSKELVRTLLFHIKEQIKRGAGSVRS 622 (799)
T ss_dssp HHHHHHHTBCHHHHHHHHHHHHHHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTTTTCSCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 4444433333333344555555555443332222222 2222566666656555567788887777555332 1
Q ss_pred C-C--CCc----hHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 000194 376 G-K--PSL----EALACVGNIARAMGPVMEPHVRGLLDIM 408 (1880)
Q Consensus 376 ~-~--~~~----~a~~~l~~la~~~g~~~~~~l~~ll~~l 408 (1880)
. + +.. --+.+++.+....|+.+.+|-+++++.+
T Consensus 623 ~~e~~~~D~~L~w~l~iL~~~v~~~g~~lL~y~deL~~il 662 (799)
T 1vsy_4 623 TSEIQQRDVKLVLYLTALNDVLRNCHESLLEYSDELITFM 662 (799)
T ss_dssp SSSCCTTTHHHHHHHHHHHHHHTTTGGGGGTTHHHHHHHH
T ss_pred ccccCcchHHHHHHHHHHHHHHhcCcHHHHccHHHHHHHH
Confidence 1 1 111 2356677777777777888877766543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=87.17 E-value=6.3 Score=51.71 Aligned_cols=157 Identities=10% Similarity=-0.068 Sum_probs=108.3
Q ss_pred HhcCChhHHHHHHHHHh--------cCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCc
Q 000194 1580 RKSGRISQARSTLVKLL--------QYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPV 1651 (1880)
Q Consensus 1580 Rk~g~~~~a~~~L~~l~--------~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~ 1651 (1880)
-..|+++.|...+.++. ..+| ..+...+..+..+...|+ ..+|+..+++.+..-..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p----------~~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~--- 465 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS----------ESVELPLMEVRALLDLGD---VAKATRKLDDLAERVGW--- 465 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT----------TCSHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHCC---
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc----------cchhHHHHHHHHHHhcCC---HHHHHHHHHHHhccCcc---
Confidence 67889999999998887 3333 246778888999999995 68999999987753211
Q ss_pred cccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhc
Q 000194 1652 IQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTL 1731 (1880)
Q Consensus 1652 ~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~ 1731 (1880)
.++++..+|.-.... ...++.+..|++|++++|+...+|+..|....+.
T Consensus 466 -------------------~~~a~~~lg~~~~~~------g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~------ 514 (681)
T 2pzi_A 466 -------------------RWRLVWYRAVAELLT------GDYDSATKHFTEVLDTFPGELAPKLALAATAELA------ 514 (681)
T ss_dssp -------------------CHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH------
T ss_pred -------------------hHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc------
Confidence 123344444444333 2357899999999999999999999999886552
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh
Q 000194 1732 RGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI 1798 (1880)
Q Consensus 1732 ~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~ 1798 (1880)
++.+ . +..|-+++.+. +. .......+=.+++..|..++..+.+++.+..=|-
T Consensus 515 -g~~~-------~-~~~~~~al~~~-----P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 566 (681)
T 2pzi_A 515 -GNTD-------E-HKFYQTVWSTN-----DG-VISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH 566 (681)
T ss_dssp -TCCC-------T-TCHHHHHHHHC-----TT-CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred -CChH-------H-HHHHHHHHHhC-----Cc-hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence 1111 2 44566666664 22 3445566777788888888877778877765553
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=87.09 E-value=5 Score=52.55 Aligned_cols=187 Identities=13% Similarity=0.015 Sum_probs=97.3
Q ss_pred HHhhhcCCCcchhHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHH
Q 000194 157 ALDWLRGDRVEYRRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQ 235 (1880)
Q Consensus 157 ~~~~l~~~~~~~~R~aA~~~l~~la~~~p~-~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~ 235 (1880)
+++-|++ .+...|..|+.+|+.|+++... .+.-+-..|.+.|-..|.|++..||.+|+.||+.+...- +.....+
T Consensus 39 ll~~L~S-~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~---g~d~~~~ 114 (684)
T 4gmo_A 39 VLKDLKS-PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE---EADFCVH 114 (684)
T ss_dssp HHHHHSS-SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS---CHHHHHH
T ss_pred HHHHcCC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc---CchHHHH
Confidence 4455554 4567899999999999975332 222233334455566799999999999999999875421 1111111
Q ss_pred -----HHHH---HHHHHHhhccC---C---CC-------hhHHHHHHHHHHHHHHcchhhhHHHH-HHHHHHHHHHhhc-
Q 000194 236 -----WYYR---MFEATQDGLGR---N---AP-------VHSIHGSLLAVGELLRNTGEFMMSRY-REVAEIVLRYLEH- 292 (1880)
Q Consensus 236 -----~~~~---~l~~~~~~l~~---~---~~-------~~~~~~al~~l~~ll~~~~~~~~~~~-~~i~~~ll~~~~~- 292 (1880)
.+.. ++......+.. . .. ++.....+.+|..|.+...+.+..-. ...+..++..+.+
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 1221 22222111111 0 00 12333455566666665544332211 1233444444322
Q ss_pred --chhHHHHHHHHHhHhHhhhChhhHHHHHH----HHHHHHHHHhhcCC-CCcchHHHHHHHH
Q 000194 293 --RDRLVRLSITSLLPRIAHFLRDRFVTNYL----KICMNHILTVLRIP-AERDSGFIALGEM 348 (1880)
Q Consensus 293 --~~~~Vr~~~~~~i~~la~~~~~~f~~~yl----~~~~~~Ll~~L~~~-~~r~~a~~alg~l 348 (1880)
....++.++..+|-.++...++ |.+... ..++..++...+.. ..|..+...+.++
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~-~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni 256 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLK-VGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNV 256 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHH-HHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhH
Confidence 3467999999999998876653 333211 12344444433322 2344455555554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.98 E-value=17 Score=41.61 Aligned_cols=188 Identities=15% Similarity=0.080 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
...+-+-+.+.+..|+++.|..+..++..+.+..... ..........+.++...|+ ..+|+..+++.+.-...
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~Al~l~~~ 109 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE----DEAGNTYVEAYKCFKSGGN---SVNAVDSLENAIQIFTH 109 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHH
Confidence 4456666778899999999999988877653211000 0013445566777778884 68899999886653211
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc------hHHHHHHHHHH
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW------GKAWHSWALFN 1722 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~------~k~w~~wA~~n 1722 (1880)
..+....+.++..+|.-.... ....++.+.+|++|+++.|+. ..+|..+|.+.
T Consensus 110 ----------------~g~~~~~a~~~~~lg~~~~~~-----lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 168 (292)
T 1qqe_A 110 ----------------RGQFRRGANFKFELGEILEND-----LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK 168 (292)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------------cCCHHHHHHHHHHHHHHHHHh-----hcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 122334577788888877652 035799999999999998754 34555556554
Q ss_pred HHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcch-HHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh
Q 000194 1723 TAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDS-LQDILRLLTLWFNHGATEEVQIALQKGFAHVNI 1798 (1880)
Q Consensus 1723 ~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~-~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~ 1798 (1880)
.+ .+ -...|+..|-+++..........+. .....++-.+++..|+..+....+++.+.--|.
T Consensus 169 ~~-------~g-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 169 AL-------DG-------QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HH-------TT-------CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HH-------hC-------CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 32 11 2347899999999875311100111 123566777788889988888888888765554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=86.84 E-value=28 Score=43.76 Aligned_cols=176 Identities=9% Similarity=0.075 Sum_probs=112.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
+....|+.++.+..+.|+++.|.....++...+|. .+..+-+.++.++...| +..+|...++..+...
T Consensus 319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~~~~~~~~~~~---~~~~A~~~~~~Al~~~ 386 (530)
T 2ooe_A 319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI---------DPTLVYIQYMKFARRAE---GIKSGRMIFKKAREDA 386 (530)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS---------CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTCT
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc---------CchHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcc
Confidence 56899999999999999999999999998876442 11246777788777777 3577888777654311
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
. .......+.++. .|. . ....++..+.|..+++.+|+....|..+|.+..+
T Consensus 387 ~-----------------~~~~~~~~~a~~---~~~-~------~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~-- 437 (530)
T 2ooe_A 387 R-----------------TRHHVYVTAALM---EYY-C------SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-- 437 (530)
T ss_dssp T-----------------CCTHHHHHHHHH---HHH-H------TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--
T ss_pred C-----------------CchHHHHHHHHH---HHH-H------cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh--
Confidence 0 001111121111 121 1 1357899999999999999999999999977321
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
. .-...|...|-+++...+. .+.....-..+.+..-..+|+.+.+.....+.....|
T Consensus 438 -----~-------g~~~~Ar~~~~~al~~~~~--~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 438 -----L-------NEDNNTRVLFERVLTSGSL--PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp -----T-------TCHHHHHHHHHHHHHSCCS--CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred -----C-------CCHhhHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 1 1234678888888875311 1111121223444455667887777766666655554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=86.53 E-value=5.6 Score=42.78 Aligned_cols=117 Identities=14% Similarity=0.092 Sum_probs=71.6
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1880)
.+|....+.+.|..|+.+++.... + .....-.+..+|..+|+.+.+...+..+... .. ....+..|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~--------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQD--------P-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSS--------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcC--------C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 456777788888888887766531 1 2456667888888888888887776643221 00 11233457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCc-------------hhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPH-------------IVLEATLGRMRCLAALARWEELNNLCK 1415 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~-------------~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1880)
.+.|+|++|+..|++.+...++.. ...+....+-.|+..+|+|+.-....+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 788888888888888776433211 012334455566666666655544443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=86.22 E-value=4.2 Score=41.22 Aligned_cols=86 Identities=7% Similarity=-0.095 Sum_probs=41.9
Q ss_pred HHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcHHHHHH
Q 000194 1292 GALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKESWYEK 1366 (1880)
Q Consensus 1292 ~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~~~~e~ 1366 (1880)
+....+.|.|..|+.+++...... ++....+..|..+|..+|+.+.+.-.++.+... . . .-..+..|.+
T Consensus 28 g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 28 AFNQYQSGXYEDAHXVFQALCVLD------HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHcC------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 444455555666665555443221 223444555666666666666655555432210 0 0 0112233556
Q ss_pred hcCHHHHHHHHHHHHhc
Q 000194 1367 LQRWDDALKAYTNKASQ 1383 (1880)
Q Consensus 1367 lg~W~~Al~~y~~~~~~ 1383 (1880)
+|++++|+.+|++.+..
T Consensus 102 ~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 102 XGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 66666666666665543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=86.20 E-value=5.3 Score=38.00 Aligned_cols=88 Identities=17% Similarity=0.111 Sum_probs=47.6
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1880)
.++....+.+.|.+|+.+++...... +........+..+|...|+.+.+...++..... .. .......|
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34555566667777776666554321 222345556666677777776666655532211 00 11123346
Q ss_pred HHhcCHHHHHHHHHHHHhc
Q 000194 1365 EKLQRWDDALKAYTNKASQ 1383 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~ 1383 (1880)
.+.|+|++|...|++.+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 6667777777777666544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=86.06 E-value=3.4 Score=43.22 Aligned_cols=166 Identities=14% Similarity=0.030 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
.+.++..+....+.|+++.|...+.++...+| ..+.+.+..+.++...|+ ..+|+..++..+..-.
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P----------~~~~a~~~la~~~~~~g~---~~~A~~~~~~a~~~~p- 71 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQ----------SRGDVKLAKADCLLETKQ---FELAQELLATIPLEYQ- 71 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHH----------TSHHHHHHHHHHHHHTTC---HHHHHHHHTTCCGGGC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----------CcHHHHHHHHHHHHHCCC---HHHHHHHHHHhhhccC-
Confidence 34578889999999999999999988776544 247788889999999995 6789988776432100
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1880)
. .....+.+.+.+ .+. .. . .+.+..|+++++.+|+...+|+.+|......
T Consensus 72 ~---------------~~~~~~~~~~~~-~~~----~~-----~--~~a~~~~~~al~~~P~~~~~~~~la~~~~~~--- 121 (176)
T 2r5s_A 72 D---------------NSYKSLIAKLEL-HQQ----AA-----E--SPELKRLEQELAANPDNFELACELAVQYNQV--- 121 (176)
T ss_dssp C---------------HHHHHHHHHHHH-HHH----HT-----S--CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---
T ss_pred C---------------hHHHHHHHHHHH-Hhh----cc-----c--chHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Confidence 0 000111121111 111 10 1 1347889999999999999999999875541
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcc-hHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000194 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDD-SLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1880)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~-~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1880)
.-...|+..|-+++...+ .+ .......+-.++...|...+....+++.+.
T Consensus 122 -----------g~~~~A~~~~~~~l~~~p-----~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 122 -----------GRDEEALELLWNILKVNL-----GAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp -----------TCHHHHHHHHHHHHTTCT-----TTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred -----------ccHHHHHHHHHHHHHhCc-----ccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 123478889989888742 22 122344556667777887776666665543
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=85.95 E-value=37 Score=41.00 Aligned_cols=55 Identities=15% Similarity=0.260 Sum_probs=39.3
Q ss_pred CchhHHHHHHhhccc-ccC--CCcchh--hHHHHHhhhccCCChHHHHHHHHHHHHhhhc
Q 000194 478 GSAPVQLALQTLARF-NFK--GHDLLE--FARDSVVLYLDDEDKATRKDAALCCCKLVAN 532 (1880)
Q Consensus 478 ~~~~~~~Al~~L~~~-~~~--~~~l~~--~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~ 532 (1880)
|+...+.||.=+|+| .+. |..... -.++.+..++.|++++||..|-.|+.+++..
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 455788999999998 222 221111 1356678899999999999999888877654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=85.91 E-value=6.8 Score=39.89 Aligned_cols=101 Identities=10% Similarity=-0.071 Sum_probs=74.4
Q ss_pred HHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHH
Q 000194 1671 IARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYF 1750 (1880)
Q Consensus 1671 ~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~ 1750 (1880)
.+..++.+|.-.... ...++.+..|+++++++|+...+|+..|...... .-...|+..|-
T Consensus 35 ~~~~~~~lg~~~~~~------g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~--------------g~~~~Ai~~~~ 94 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNK------GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK--------------EQFQQAADLYA 94 (151)
T ss_dssp HHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------------ccHHHHHHHHH
Confidence 345566666655543 3578999999999999999999999999876541 12348999999
Q ss_pred HHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1751 HSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1751 ~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
+++.+.+ . .......+=..++..|..++-...+++.+..-|
T Consensus 95 ~al~l~P-----~-~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 95 VAFALGK-----N-DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHSS-----S-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHhhCC-----C-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999863 2 234556777778888998887777777765433
|
| >3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* | Back alignment and structure |
|---|
Probab=85.85 E-value=38 Score=40.05 Aligned_cols=204 Identities=10% Similarity=0.122 Sum_probs=115.5
Q ss_pred hhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCc----
Q 000194 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE---- 674 (1880)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~---- 674 (1880)
.++..|+..+..+++.-|...-.+|.++-..... ..+.+|+.+...+...-+......--.+.++++|.++....
T Consensus 129 ~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~-~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLk 207 (403)
T 3fga_B 129 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK 207 (403)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCch
Confidence 4566777888889999999998888887654432 24666776666555443331212223467888888886432
Q ss_pred -----------------ccccCchHHHHHHHHHHhccCCC-------------CCCChhHHHHHHHHHHHHHHhcC-Cch
Q 000194 675 -----------------RLIRPYIAPIHKALVARLLEGTG-------------INANNGIISGVLVTVGDLARVGG-FGM 723 (1880)
Q Consensus 675 -----------------~~~~py~~~il~~ll~~l~~~~~-------------~~~~~~v~~~~~~~l~~La~~~g-~~~ 723 (1880)
+.+.-|.+++...+.+.+..+.. +..++.-....+.=++++....+ .++
T Consensus 208 eehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f 287 (403)
T 3fga_B 208 EEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEF 287 (403)
T ss_dssp HHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHH
Confidence 12234556666666666543210 00011111112223344444443 456
Q ss_pred hhhHHhHHHHHHHHHhcCCchhhHHHHHHHH-----HHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000194 724 RQYISELMPLIVEALLDGAAVTKREVAVSTL-----GQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVL 798 (1880)
Q Consensus 724 ~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~L-----g~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~l 798 (1880)
.+....++..+..++... +..+-+.|+.-. ..++... .-..+|-+++.|.+..++.-+..+|..+..++
T Consensus 288 ~~i~~~lf~~la~ci~S~-hfqVAErAL~~wnNe~i~~li~~n-----~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vl 361 (403)
T 3fga_B 288 VKIMEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDN-----AAKILPIMFPSLYRNSKTHWNKTIHGLIYNAL 361 (403)
T ss_dssp HHHHHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTT-----HHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHhccHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 667777777777777654 345555554332 1122111 11123555555555555555889999999999
Q ss_pred HHHcccCccch
Q 000194 799 GIMGALDPHAH 809 (1880)
Q Consensus 799 g~lgaldp~~~ 809 (1880)
..+.-+||..+
T Consensus 362 k~l~e~d~~lF 372 (403)
T 3fga_B 362 KLFMEMNQKLF 372 (403)
T ss_dssp HHHHTTSCCCC
T ss_pred HHHHHhCHHHH
Confidence 99888887653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=85.19 E-value=6.5 Score=42.46 Aligned_cols=149 Identities=11% Similarity=-0.019 Sum_probs=83.4
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHH----------------HHHHHhhcCChHHHhHHHHHHhc-
Q 000194 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEA----------------LIHINNQLHQHEAAVGILTYAQK- 1353 (1880)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~----------------L~~iy~~L~~~D~~~Gi~~~~~~- 1353 (1880)
.|....+-|.|..|+.+++......+ +.....-. |..+|..+|+.|.+...++.+-.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNI------DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCH------HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC------CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35566677888888888877654321 11233334 88999999999999888775432
Q ss_pred hh---h-hhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhh--CHHHHHHHHhhhcCCCChHHHH
Q 000194 1354 EL---D-VQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALA--RWEELNNLCKEYWTPAEPAARL 1427 (1880)
Q Consensus 1354 ~~---~-~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg--~w~~l~~~~~~~~~~~~~~~~~ 1427 (1880)
.+ . ....+..|.+.|+|++|+.+|++.+...++. .+....+-.++...| +++......+..... .+..
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 157 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN---LAANIFLGNYYYLTAEQEKKKLETDYKKLSSP-TKMQ-- 157 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHC---CC-CHHH--
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC-Cchh--
Confidence 11 1 1223446889999999999999988765443 233344444444444 344444333332221 1110
Q ss_pred hHHHHHHHHHHHcCChhhHHHHHh
Q 000194 1428 EMAPMAANAAWNMGEWDQMAEYVS 1451 (1880)
Q Consensus 1428 ~~~~~~a~aaw~l~~Wd~~~~~~~ 1451 (1880)
........+...+|+++.-..+.+
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~ 181 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQ 181 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Confidence 000112234455667766555444
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.77 E-value=5.6 Score=42.44 Aligned_cols=114 Identities=12% Similarity=-0.026 Sum_probs=58.0
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCc-----------HHHHHHHHHHHhhcCChHHHhHHHHHHhch-h--
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANP-----------VAVVEALIHINNQLHQHEAAVGILTYAQKE-L-- 1355 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~-----------~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~-- 1355 (1880)
.+|....+.+.|..|+.+.+......+... +... ......+..+|..+|+.+.+.-.+..+... .
T Consensus 43 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 121 (198)
T 2fbn_A 43 EEGNEFFKKNEINEAIVKYKEALDFFIHTE-EWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN 121 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCT-TCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc
Confidence 457777788889999888776654322110 0000 134445566666666666665544432211 0
Q ss_pred --hhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCH
Q 000194 1356 --DVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARW 1407 (1880)
Q Consensus 1356 --~~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w 1407 (1880)
..-..+..|.++|+|++|+..|++.+...++. .+....+-.|+..+|+.
T Consensus 122 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 122 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNN---LDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHHHHH
Confidence 01122334566666666666666665443322 23334445555555543
|
| >2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17 | Back alignment and structure |
|---|
Probab=83.64 E-value=12 Score=40.94 Aligned_cols=131 Identities=11% Similarity=0.005 Sum_probs=87.4
Q ss_pred HHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHH
Q 000194 72 DRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE 151 (1880)
Q Consensus 72 ~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~ 151 (1880)
..+.+|.+++.-.+|+.|+..+....... .. ....++...++..+.=++.+..|.++|.+... .++.
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~---~~----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~----~~~~-- 124 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRF---SL----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL----HLTE-- 124 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGC---CH----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH----SGGG--
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhC---CH----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH----ChHH--
Confidence 33456777777778888888887664221 11 22334555555444567778777888887653 1111
Q ss_pred HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 000194 152 FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLR 223 (1880)
Q Consensus 152 ~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1880)
..+.+.+|+.++..+.+|.|.+..+ +..-..+...+++.+-..+.|++.-||.+.+.+|+.+..
T Consensus 125 -~~~~i~~W~~s~~~w~rR~ai~~~l-------~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k 188 (220)
T 2b6c_A 125 -LPTIFALFYGAENFWNRRVALNLQL-------MLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK 188 (220)
T ss_dssp -HHHHHHHHTTCSSHHHHHHHHHTTT-------TCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHcCCCHHHHHHHHHHHH-------HHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 1345778999888888888866443 222235666777777778999999999999999998653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=83.60 E-value=5.7 Score=47.62 Aligned_cols=126 Identities=10% Similarity=0.026 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC----Ccccc--cCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPET----SHENV--RYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~----~~~~~--~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~ 1642 (1880)
...|...+..+.+.|+++.|...+.++..+.+.. ..+.. .....+.+.+..+.++...|+ ..+|+..+++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~---~~~A~~~~~~a 299 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD---WQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC---HHHHHHHHHHH
Confidence 5678999999999999999999988877631110 00000 000124566677778888884 67899988876
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000194 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1880)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1880)
+.. . ...++++..+|.-...+ ...++.+..|++|.+++|+...+|..++...
T Consensus 300 l~~-~---------------------p~~~~a~~~lg~~~~~~------g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 300 LEI-D---------------------PSNTKALYRRAQGWQGL------KEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HTT-C---------------------TTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHh-C---------------------chhHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 531 1 01245566666666554 3468899999999999999999999888776
Q ss_pred HHH
Q 000194 1723 TAV 1725 (1880)
Q Consensus 1723 ~~~ 1725 (1880)
..+
T Consensus 352 ~~~ 354 (370)
T 1ihg_A 352 QKI 354 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=83.58 E-value=4.8 Score=40.54 Aligned_cols=57 Identities=18% Similarity=0.029 Sum_probs=27.2
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCc---HHHHHHHHHHHhhcCChHHHhHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANP---VAVVEALIHINNQLHQHEAAVGILT 1349 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~---~~~~e~L~~iy~~L~~~D~~~Gi~~ 1349 (1880)
.++......+.|..|+.+.+......+.. .++ ......+..+|..+|+.+.+...++
T Consensus 14 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 73 (164)
T 3ro3_A 14 NLGNTHYLLGNFRDAVIAHEQRLLIAKEF---GDKAAERIAYSNLGNAYIFLGEFETASEYYK 73 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHh---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555566677777776665543221100 011 1123345555555555555554444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=83.23 E-value=8 Score=47.88 Aligned_cols=127 Identities=9% Similarity=-0.031 Sum_probs=83.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCc---ccc--cCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSH---ENV--RYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~---~~~--~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~ 1642 (1880)
....|...+..+.+.|+++.|.....++..+++.... +.. .......+.+..+.++...|+ ..+|+..+++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~---~~~A~~~~~~a 343 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE---YTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence 3678899999999999999999999998876553100 000 000003556667778888884 68899999887
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000194 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1880)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1880)
+.... ..+++++.+|.-...+ ...++.+..|++|++++|++..+|..++...
T Consensus 344 l~~~p----------------------~~~~a~~~~g~a~~~~------g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 344 LGLDS----------------------ANEKGLYRRGEAQLLM------NEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHST----------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HhcCC----------------------ccHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 65311 0134455555555443 2467889999999999999999999888776
Q ss_pred HHH
Q 000194 1723 TAV 1725 (1880)
Q Consensus 1723 ~~~ 1725 (1880)
..+
T Consensus 396 ~~~ 398 (457)
T 1kt0_A 396 KKA 398 (457)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 | Back alignment and structure |
|---|
Probab=83.22 E-value=70 Score=36.57 Aligned_cols=132 Identities=13% Similarity=0.178 Sum_probs=93.3
Q ss_pred cccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcC--CCcchhHHHHHHHHHHHHhhcCccch----hch
Q 000194 119 FEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRG--DRVEYRRFAAVLILKEMAENASTVFN----VHV 192 (1880)
Q Consensus 119 l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~--~~~~~~R~aA~~~l~~la~~~p~~l~----~~l 192 (1880)
.|...|++|....+..+.++-..-....+..++..+.-.++-+.. +.-+..|.+=..+|+++..+|...+. +++
T Consensus 86 vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~f 165 (321)
T 1w9c_A 86 VPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQF 165 (321)
T ss_dssp CGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH
Confidence 344568999999998888886543333445555555555555653 34457899999999999999988654 477
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHH----HHHHHHHHHHhhccCC
Q 000194 193 AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQ----WYYRMFEATQDGLGRN 251 (1880)
Q Consensus 193 ~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~----~~~~~l~~~~~~l~~~ 251 (1880)
..+++.|.-|.+++...|-+.+.+.+..++..+++ ......+ +|..++..+..-+.|+
T Consensus 166 klvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~-~~~~~~~Fy~~fy~~il~~if~VlTDs 227 (321)
T 1w9c_A 166 KLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ-EEAAAQSFYQTYFCDILQHIFSVVTDT 227 (321)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 88899999999999999999999988888877764 2233333 4445555555555554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=82.93 E-value=13 Score=43.06 Aligned_cols=183 Identities=7% Similarity=0.025 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
...+.+.+.+.+..|+++.|..++.++..+.+..... ..........+.+....|+ ..+|+..+++.+.-...
T Consensus 36 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~Al~l~~~ 108 (307)
T 2ifu_A 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSL----FHAAKAFEQAGMMLKDLQR---MPEAVQYIEKASVMYVE 108 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC---GGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHH
Confidence 5566777888899999999999888876543211000 0012233445566666775 46788888876643221
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc------hHHHHHHHHHH
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW------GKAWHSWALFN 1722 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~------~k~w~~wA~~n 1722 (1880)
..+....+.++..+|.-... ...++.+.+|++|+++.+.. ..+|..+|.+.
T Consensus 109 ----------------~g~~~~~a~~~~~lg~~~~~-------g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 165 (307)
T 2ifu_A 109 ----------------NGTPDTAAMALDRAGKLMEP-------LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLL 165 (307)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHHTT-------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------------cCCHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 12234567788888877643 35899999999999988754 34555555553
Q ss_pred HHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcc-hHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1723 TAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDD-SLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1723 ~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~-~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
.+ .+ -...|+..|-+++.+.... +... .......+..+++..|+..+....+++.+ ..|
T Consensus 166 ~~-------~g-------~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 166 VR-------QQ-------KFDEAAASLQKEKSMYKEM-ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HH-------TT-------CHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HH-------cC-------CHHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 32 11 2347888888888764211 1111 12234555566677788888888888887 555
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=82.86 E-value=19 Score=40.95 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=81.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|...+....+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~-- 67 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----------VAVYYTNRALCYLKMQQ---PEQALADCRRALEL-- 67 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHTTS--
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----------cHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHh--
Confidence 4678899999999999999999999998877652 46778888899989995 68899988875431
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc-----hHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW-----GKAWHSWALF 1721 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~-----~k~w~~wA~~ 1721 (1880)
.+ -.++++..+|.-...+ ...++.+..|+++.+++|+. ..+|......
T Consensus 68 -~p-------------------~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 120 (281)
T 2c2l_A 68 -DG-------------------QSVKAHFFLGQCQLEM------ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120 (281)
T ss_dssp -CT-------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred -CC-------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH
Confidence 10 0123445555544443 24678899999999999865 3455555433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=82.83 E-value=18 Score=38.14 Aligned_cols=127 Identities=7% Similarity=-0.026 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhhcCChHHHhHHHHHHhc------hh-----hhhhcHHHHHHhcCHHHHHHHHHHHHhc---cC-CCch
Q 000194 1325 VAVVEALIHINNQLHQHEAAVGILTYAQK------EL-----DVQLKESWYEKLQRWDDALKAYTNKASQ---AS-NPHI 1389 (1880)
Q Consensus 1325 ~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~------~~-----~~~~~~~~~e~lg~W~~Al~~y~~~~~~---~~-~~~~ 1389 (1880)
......+..+|...|+++.+.-.++.+.. .. .....+..|...|+|++|+..|++.+.. .+ ++..
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 34556677777777777777665553322 00 0112233578889999999999887653 22 1111
Q ss_pred hHHhHhhHhHHHHHhhCHHHHHHHHhhhc----CCCChHHHHhHHHHHHHHHHHcCChhhHHHHHh
Q 000194 1390 VLEATLGRMRCLAALARWEELNNLCKEYW----TPAEPAARLEMAPMAANAAWNMGEWDQMAEYVS 1451 (1880)
Q Consensus 1390 ~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~----~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~ 1451 (1880)
.......+-.++..+|+|+.-....+... ...+...........+.+.+.+|+|+.-..+..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 12334556677888889876655544321 011122222223355678888888887666544
|
| >2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 | Back alignment and structure |
|---|
Probab=82.78 E-value=44 Score=40.25 Aligned_cols=237 Identities=13% Similarity=0.112 Sum_probs=121.3
Q ss_pred HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHH-HHHHHhhcccCCChHHHHHHHHHHHHHhhh-CCCCch
Q 000194 70 LYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKF-SNYMRTVFEVKRDREILVLASKVLGHLARA-GGAMTA 147 (1880)
Q Consensus 70 l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~-~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~-~g~~~~ 147 (1880)
+..++.++++|+|+++|..--..+-.+.+...+ ..+.+++- .+.+.+.+-......-+...-+.+|.+... .-.+..
T Consensus 163 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKe 241 (449)
T 2npp_B 163 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 241 (449)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTT-THHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence 556677888999999887544444444332212 22233332 232222221122223334556677777653 112445
Q ss_pred hHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q 000194 148 DEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK 227 (1880)
Q Consensus 148 ~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~ 227 (1880)
++..+....+++......-......=..++.++.+..|+...+.+..++ ..|..- ++.-.| --|+.+.+++..
T Consensus 242 ehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LL-k~WP~t-ns~Kev-----lFL~eleeile~ 314 (449)
T 2npp_B 242 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALL-KYWPKT-HSPKEV-----MFLNELEEILDV 314 (449)
T ss_dssp HHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHH-HTCCSS-CHHHHH-----HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHHHHH-HhCCCC-CchHHH-----HHHHHHHHHHHh
Confidence 6666666666665543332222222234444555666665544443333 223221 111111 124444444433
Q ss_pred hchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh-----hcchhHHHHHHH
Q 000194 228 RETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL-----EHRDRLVRLSIT 302 (1880)
Q Consensus 228 r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~-----~~~~~~Vr~~~~ 302 (1880)
-++.........++..+..++.++. -.+...|+...+.= .--..+..+-..+++.++..+ +|=+..||..+.
T Consensus 315 ~~~~ef~~i~~~lF~~la~ci~S~h-fqVAErAL~~w~N~--~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~ 391 (449)
T 2npp_B 315 IEPSEFVKIMEPLFRQLAKCVSSPH-FQVAERALYYWNNE--YIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIY 391 (449)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCSC-HHHHHHHHGGGGCH--HHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHCCH--HHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHH
Confidence 3333445566778888888888875 45666666543110 000122223334445444433 455889999999
Q ss_pred HHhHhHhhhChhhHH
Q 000194 303 SLLPRIAHFLRDRFV 317 (1880)
Q Consensus 303 ~~i~~la~~~~~~f~ 317 (1880)
.++..+.+.++.-|-
T Consensus 392 ~vlk~l~e~d~~lf~ 406 (449)
T 2npp_B 392 NALKLFMEMNQKLFD 406 (449)
T ss_dssp HHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHCHHHHH
Confidence 999999988887653
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=82.60 E-value=1.9 Score=56.69 Aligned_cols=148 Identities=13% Similarity=0.089 Sum_probs=87.9
Q ss_pred HHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCc-hHHHHHHHHH-HhccCCCCCCChhHHHHHHHHHHHHHHhcCCc
Q 000194 645 LLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY-IAPIHKALVA-RLLEGTGINANNGIISGVLVTVGDLARVGGFG 722 (1880)
Q Consensus 645 ~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py-~~~il~~ll~-~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~ 722 (1880)
++..|+ + .++..|..||.+|+.|++... .-+-. -..++..++. .+.|+ +..|+.+++.+++.|+..+|.+
T Consensus 39 ll~~L~-S-~~~~~r~~A~~al~~l~~~~~-~~~l~~~~~~v~~ll~~lL~D~-----~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 39 VLKDLK-S-PDAKSRTTAAGAIANIVQDAK-CRKLLLREQVVHIVLTETLTDN-----NIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HHHHHS-S-SCCSHHHHHHHHHHHHTTSHH-HHHHHHHTTHHHHHHHTTTTCS-----CHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHcC-C-CCHHHHHHHHHHHHHHHcCcH-HHHHHHHcCCHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHhhcCch
Confidence 333444 4 578899999999999986321 11111 1234444443 35553 7899999999999999888876
Q ss_pred hhhhH--HhHHHHHHHHHhcC-------------Cch-------hhHHHHHHHHHHHHhhcCccc---ccCCcchHHHHH
Q 000194 723 MRQYI--SELMPLIVEALLDG-------------AAV-------TKREVAVSTLGQVVQSTGYVI---TPYNEYPQLLGL 777 (1880)
Q Consensus 723 ~~~~~--~~l~p~l~~~l~d~-------------~~~-------~~r~~Al~~Lg~l~~~~~~~i---~p~~~~p~ll~~ 777 (1880)
+..++ ..++|.+...+... ... +.-++++..|..++++....+ .-....|.++..
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 65543 23666666665311 000 112356777777777665432 111223444444
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 778 LLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 778 Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
|... +....+++.+++.+|..+.
T Consensus 191 L~~~--~~~~~~v~~~a~~~L~~ls 213 (684)
T 4gmo_A 191 LISA--DIAPQDIYEEAISCLTTLS 213 (684)
T ss_dssp HHHH--CCSCHHHHHHHHHHHHHHH
T ss_pred HHhc--CCCcHHHHHHHHHHHHHHh
Confidence 4332 2235789999999988774
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=82.32 E-value=5.3 Score=47.14 Aligned_cols=118 Identities=14% Similarity=-0.005 Sum_probs=74.4
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCC---------cHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h----
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDAN---------PVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---- 1355 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~---------~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---- 1355 (1880)
.+|....+.+.|..|+.+.+..+...+....... .......|..+|..+|+.+.+.-.++.+-.. .
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 231 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK 231 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 4566777778888888877766543221100000 0245667888888889988888777643221 1
Q ss_pred hhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHH
Q 000194 1356 DVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEEL 1410 (1880)
Q Consensus 1356 ~~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l 1410 (1880)
..-..+..|.++|+|++|+.+|++.+...++. .+....+-.|+..+|+++.-
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNN---KAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHH
Confidence 11223445788899999999998888654432 34556677788888887644
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=82.27 E-value=1.1e+02 Score=41.96 Aligned_cols=161 Identities=12% Similarity=0.027 Sum_probs=90.3
Q ss_pred ChHHHHHHHHHHHHHhhh----CCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHH
Q 000194 124 DREILVLASKVLGHLARA----GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAI 199 (1880)
Q Consensus 124 d~~v~~~aa~~l~~L~~~----~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i 199 (1880)
++.+.+.|.-++|.|+.. .+.-..+.++...+.+.+.+.. .++..+..++.+|+-+.. |.. ++.+
T Consensus 408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~-~~~~~~~~~LkaLGN~g~--p~~--------l~~l 476 (1056)
T 1lsh_A 408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDR-AKEEEIVLALKALGNAGQ--PNS--------IKKI 476 (1056)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTC--GGG--------HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhc-CChHHHHHHHHHhhccCC--hhH--------HHHH
Confidence 456777788889988874 1223445666666666665543 345566777777766553 322 2222
Q ss_pred HHHh-------cCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch
Q 000194 200 WVAL-------RDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG 272 (1880)
Q Consensus 200 ~~~l-------~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~ 272 (1880)
...+ .+...+||.+|..||+.+.. .++. .....+++...+ ...+.++|.+|+.+| +++.+
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~----~~p~---~v~~il~~i~~n---~~e~~EvRiaA~~~L---m~t~P 543 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAK----RDPR---KVQEIVLPIFLN---VAIKSELRIRSCIVF---FESKP 543 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG----TCHH---HHHHHHHHHHHC---TTSCHHHHHHHHHHH---HHTCC
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhh----hchH---HHHHHHHHHhcC---CCCChHHHHHHHHHH---HHHCc
Confidence 2222 12346799999999886532 1111 122222332222 112468888877665 44322
Q ss_pred hhhHHHHHHHHHHHHHHh-hcchhHHHHHHHHHhHhHhhhChh
Q 000194 273 EFMMSRYREVAEIVLRYL-EHRDRLVRLSITSLLPRIAHFLRD 314 (1880)
Q Consensus 273 ~~~~~~~~~i~~~ll~~~-~~~~~~Vr~~~~~~i~~la~~~~~ 314 (1880)
.. .++..+...+ .+++..|+..+...|-.++.....
T Consensus 544 ~~------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 544 SV------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp CH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred CH------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 10 1222233333 457889999999999999876544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=81.99 E-value=13 Score=37.99 Aligned_cols=127 Identities=7% Similarity=-0.076 Sum_probs=83.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC----Ccccc--c--CCCChHHHHHHHHHHHhcCCcchHHHHHHHH
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPET----SHENV--R--YHGPPQVMYAYLKYQWSLGEDLKRKEAFARL 1639 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~----~~~~~--~--~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L 1639 (1880)
....|...+..+.+.|+++.|.....++....+.. .+.+. . ....+.+.+..+.++...|+ ..+|+..+
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~---~~~A~~~~ 86 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD---LHEAEETS 86 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc---HHHHHHHH
Confidence 36788999999999999999999988877651100 00000 0 00123566667778888885 67899988
Q ss_pred HHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch-HHHHHH
Q 000194 1640 QTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG-KAWHSW 1718 (1880)
Q Consensus 1640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~-k~w~~w 1718 (1880)
+..+.- .. ..+++++.+|.-...+ ...++.+..|+++++++|+.. .++..+
T Consensus 87 ~~al~~-~p---------------------~~~~a~~~~g~~~~~~------g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 87 SEVLKR-EE---------------------TNEKALFRRAKARIAA------WKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHHHHH-ST---------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHhc-CC---------------------cchHHHHHHHHHHHHH------hcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 876642 10 1234455555555444 246788999999999999988 556666
Q ss_pred HHHHHHH
Q 000194 1719 ALFNTAV 1725 (1880)
Q Consensus 1719 A~~n~~~ 1725 (1880)
+.....+
T Consensus 139 ~~~~~~~ 145 (162)
T 3rkv_A 139 KIVTERR 145 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=81.69 E-value=7.5 Score=44.75 Aligned_cols=118 Identities=12% Similarity=0.107 Sum_probs=80.2
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh----------hhhh
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL----------DVQL 1359 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~----------~~~~ 1359 (1880)
.+|.+....|.+..||..++......+ ..+..+..-.++.||-++|++|.|.-+++..+... -.++
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~----~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~L 180 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDE----AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNL 180 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSC----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCC----CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHH
Confidence 567777778889999998877654221 01345677788999999999999999997543221 1334
Q ss_pred cHHHHH-Hhc--CHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000194 1360 KESWYE-KLQ--RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCK 1415 (1880)
Q Consensus 1360 ~~~~~e-~lg--~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1880)
.+.|.. ..| ++++|+..|++..+..++ +.....++.|+.++|+|+......+
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~~~p~----~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQTFPT----WKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTTSCS----HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhCCC----cccHHHHHHHHHHcCCHHHHHHHHH
Confidence 444532 224 899999999987643322 2234556669999999987766654
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=81.54 E-value=9.6 Score=52.40 Aligned_cols=132 Identities=15% Similarity=0.177 Sum_probs=87.7
Q ss_pred HHHHHHhhhcC----CChhhhhhHHHHHhHhhccccCc----chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhh
Q 000194 70 LYDRISGLLES----NDAAENLGALRAIDELIDVALGE----NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA 141 (1880)
Q Consensus 70 l~~~i~~l~~s----~~~~~r~~~i~ai~~Li~~~~~~----~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~ 141 (1880)
+.+.+++|+++ ++..-|..+++++..|+...... ....+..+.++|...+. ..|.+-+..+-++||.+...
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~-~~~~~~~~~~LkaLGN~g~p 470 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSD-RAKEEEIVLALKALGNAGQP 470 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHh-cCChHHHHHHHHHhhccCCh
Confidence 44556677765 34456778999999997642111 23457778888888885 56788888999999988653
Q ss_pred CCCCchhHHHHHHHHHHhhhcC------CCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHh--cCCchhHHHH
Q 000194 142 GGAMTADEVEFQVKMALDWLRG------DRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL--RDPTLAVRER 213 (1880)
Q Consensus 142 ~g~~~~~~v~~~~~~~~~~l~~------~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l--~D~~~~VR~a 213 (1880)
. - ++.+.+++.. +...+.|.+|+.+|+.++..-|.. +.+.++... ++.+++||-+
T Consensus 471 ~------~----l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~-------v~~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 N------S----IKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp G------G----HHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHHHHH
T ss_pred h------H----HHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH-------HHHHHHHHhcCCCCChHHHHH
Confidence 1 1 4444455532 223457789999999988654443 334455555 4556899999
Q ss_pred HHHHHH
Q 000194 214 AVEALR 219 (1880)
Q Consensus 214 A~~al~ 219 (1880)
|+..|-
T Consensus 534 A~~~Lm 539 (1056)
T 1lsh_A 534 SCIVFF 539 (1056)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998663
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=81.17 E-value=13 Score=43.04 Aligned_cols=125 Identities=11% Similarity=0.118 Sum_probs=74.2
Q ss_pred HHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhh-----------hhhc
Q 000194 1292 GALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELD-----------VQLK 1360 (1880)
Q Consensus 1292 ~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~-----------~~~~ 1360 (1880)
+.+-.+.+.|..|+.+.+....-.+..............|..+|.. |+++.+...++.+-.... ....
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 4444555677777777765432211100000112455677888988 999988777664322110 1122
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhccCC-C--chhHHhHhhHhHHHHHhhCHHHHHHHHhhh
Q 000194 1361 ESWYEKLQRWDDALKAYTNKASQASN-P--HIVLEATLGRMRCLAALARWEELNNLCKEY 1417 (1880)
Q Consensus 1361 ~~~~e~lg~W~~Al~~y~~~~~~~~~-~--~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~ 1417 (1880)
+..|.++|+|++|+.+|++.+...++ + ........+...|+..+|+++.-....+..
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34588999999999999998753211 1 111234567778888999998777666553
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=81.02 E-value=9.8 Score=35.60 Aligned_cols=87 Identities=14% Similarity=0.021 Sum_probs=43.0
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1880)
.++......+.|..|+.+++...... +......-.+..+|..+|+.+.+.-.++..... .. ....+..+
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLD------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34566666677777777666554321 222344445555555555555555544432110 00 01122235
Q ss_pred HHhcCHHHHHHHHHHHHh
Q 000194 1365 EKLQRWDDALKAYTNKAS 1382 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~ 1382 (1880)
.+.|++++|...|++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=80.53 E-value=12 Score=34.71 Aligned_cols=87 Identities=17% Similarity=0.035 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCc-chHHhHHH
Q 000194 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVD-DSLQDILR 1771 (1880)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~-~~~q~~~R 1771 (1880)
..++.+..|.++++.+|....+|...|...... .-...|+..|-+++...+ . ........
T Consensus 21 ~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~--------------~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~ 81 (112)
T 2kck_A 21 NYTESIDLFEKAIQLDPEESKYWLMKGKALYNL--------------ERYEEAVDCYNYVINVIE-----DEYNKDVWAA 81 (112)
T ss_dssp CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHTSC-----CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc--------------cCHHHHHHHHHHHHHhCc-----ccchHHHHHH
Confidence 457888999999999999999999888775531 123478899999988752 2 13556677
Q ss_pred HHHHHHhc-CCcHHHHHHHHhcccCCCh
Q 000194 1772 LLTLWFNH-GATEEVQIALQKGFAHVNI 1798 (1880)
Q Consensus 1772 lLtLwf~~-g~~~~v~~~~~~~~~~ip~ 1798 (1880)
+-.+++.. |...+..+.+++.+..-|.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 77788888 8888888888887766654
|
| >3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A* | Back alignment and structure |
|---|
Probab=80.38 E-value=25 Score=38.57 Aligned_cols=130 Identities=13% Similarity=0.103 Sum_probs=74.7
Q ss_pred HHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHH-HHHHHHHhhhCCCCchhHHH
Q 000194 73 RISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLA-SKVLGHLARAGGAMTADEVE 151 (1880)
Q Consensus 73 ~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~a-a~~l~~L~~~~g~~~~~~v~ 151 (1880)
.+.+|.+++.-..|..|+..+....... ....+..+..|+. ..++=++.+.. ..++|.+........
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~---~~~~l~~~~~~l~----~~~nWd~~D~~a~~~~g~~~~~~p~~~----- 132 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHI---NETHIPFLEELIV----TKSWWDSVDSIVPTFLGDIFLKHPELI----- 132 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGC---CGGGHHHHHHHHT----SSCCHHHHHHHTTTHHHHHHHHCGGGG-----
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHc----cCCChHHHHHhhHHHHHHHHHHCHHHH-----
Confidence 3445666654444444444443221111 1112233333333 23455666655 367777766421111
Q ss_pred HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 000194 152 FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLR 223 (1880)
Q Consensus 152 ~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1880)
.+.+.+|+.++..+.+|.|.+..+. .........+++.+...+.|++..||.|...+|+.+..
T Consensus 133 --~~~l~~W~~s~~~w~rR~ai~~~l~-------~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k 195 (232)
T 3jxy_A 133 --SAYIPKWIASDNIWLQRAAILFQLK-------YKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAK 195 (232)
T ss_dssp --GGTHHHHHHSSCHHHHHHHHHTTTT-------CGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHhcCCchHHHHHHHHHHHH-------HHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 2346689988888888888665432 22234445666777788899999999999999987653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=80.38 E-value=5.9 Score=38.43 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHH
Q 000194 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRL 1772 (1880)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~Rl 1772 (1880)
..++.+..|+++++.+|+...+|+..|...... .-...|+..|-+++.+. +. .......+
T Consensus 32 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~--------------g~~~~A~~~~~~al~l~-----P~-~~~~~~~l 91 (121)
T 1hxi_A 32 NLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN--------------EKDGLAIIALNHARMLD-----PK-DIAVHAAL 91 (121)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHHC-----TT-CHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhC-----CC-CHHHHHHH
Confidence 357788999999999999999999999886541 12347899999999985 23 34455666
Q ss_pred HHHHHhcCCcHHHHHHHHhcccC
Q 000194 1773 LTLWFNHGATEEVQIALQKGFAH 1795 (1880)
Q Consensus 1773 LtLwf~~g~~~~v~~~~~~~~~~ 1795 (1880)
-.++...|...+....+++.+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 66777777766666666665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1880 | ||||
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 4e-27 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 4e-22 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 6e-18 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 1e-11 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-10 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 2e-15 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 1e-07 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 4e-05 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 1e-13 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 7e-13 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 5e-11 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 2e-09 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 7e-10 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 1e-06 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 7e-06 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 1e-06 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.004 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.004 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 3e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 0.003 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 0.004 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 2e-05 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 0.002 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 118 bits (296), Expect = 4e-27
Identities = 108/883 (12%), Positives = 255/883 (28%), Gaps = 60/883 (6%)
Query: 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLA----QADCLSAIFAALNDEDF 613
I L+EK+ +D R + L D + + I L D++
Sbjct: 5 ISNLLEKMT-----SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNG 59
Query: 614 DVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNC 673
+V+ A+ G L K Y + + L + S + R+ S+ L +I
Sbjct: 60 EVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNML-----SDKEQLRDISSIGLKTVIGEL 114
Query: 674 ERLI--RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELM 731
A + K + RL + + L + D+ G + + ++
Sbjct: 115 PPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSIL 174
Query: 732 PLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTR 791
++ L R+ + LG +V S + L+ LL L+ ST
Sbjct: 175 TCLLPQLTSPRLAV-RKRTIIALGHLVMS-----CGNIVFVDLIEHLLSELSKNDSMSTT 228
Query: 792 REVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSE 851
R ++ + + H + L V + + + E+ + + SF
Sbjct: 229 RTYIQCIAAISRQAGHRIG--EYLEKIIPLVVKFCNVD---DDELREYCIQAFESFVRRC 283
Query: 852 DYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTC 911
+++++ I L +M + D +
Sbjct: 284 PKEVYPHVSTIINICLK-YLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDM 342
Query: 912 DDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVL---- 967
++ L +VS + + ++ + + + + + L
Sbjct: 343 SWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQT 402
Query: 968 ---------HLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVF 1018
+ ++ +P I+ + + + + + V
Sbjct: 403 RPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL 462
Query: 1019 GGTLDEHMHLLLPALIRLFKVDAPVDIRRAA----IETLTRLIPRVQVTGHISSLVHHLK 1074
G L +H+ +L+P +I + + + + H+ +LV +
Sbjct: 463 PGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVV 522
Query: 1075 LVLDGKNDELRKDAVDALCCLAHALG-------EDFTIFIPSIHKLLLKHRLRHKEFEEI 1127
+ ++ +A+ L + D T +I + +K +E+
Sbjct: 523 ACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEV 582
Query: 1128 EGRLRRREPLILGSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQASQRS 1187
+ R + + L + ++ T L +
Sbjct: 583 KERA--ISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKID 640
Query: 1188 TKEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQK 1247
+ E + L+ L K + L T + L L L AA + +
Sbjct: 641 LRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDE-----LP 695
Query: 1248 HLVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHY 1307
L+ +M S I + + + L I L+ + + A + L +
Sbjct: 696 PLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDF 755
Query: 1308 KEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKL 1367
+ +N + + ++ ++ + H+ + + L + +
Sbjct: 756 FQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVV 815
Query: 1368 QRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEEL 1410
++ +K + S + L +G L+ + +
Sbjct: 816 GQFIQDVKNSRSTDSIRLLALLSL-GEVGHHIDLSGQLELKSV 857
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (253), Expect = 4e-22
Identities = 122/1057 (11%), Positives = 298/1057 (28%), Gaps = 56/1057 (5%)
Query: 43 ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALG 102
A+ L +++ + L ++ + + + + L + N +NL A++ + L+
Sbjct: 23 ATNDLMTELQKDSIKLDDDSERKVVKMI---LKLLEDKNGEVQNL-AVKCLGPLVSKVKE 78
Query: 103 ENASK-VSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQ-VKMALDW 160
V M + E RD + L + + + G+ A V +
Sbjct: 79 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSA 138
Query: 161 LRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRA 220
+ + A+ I+ +M + + + L P LAVR+R + AL
Sbjct: 139 IAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGH 198
Query: 221 CLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR 280
+ + + E L +N + + + + + R G +
Sbjct: 199 LVMSCGN-------IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLE 251
Query: 281 EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDS 340
++ +V+++ D +R ++ +N L L +
Sbjct: 252 KIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV-YPHVSTIINICLKYLTYDPNYNY 310
Query: 341 GFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPH 400
E A+D + + K A C+ + ++
Sbjct: 311 DDED--EDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF 368
Query: 401 VRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAAT 460
+ + + S + + + SLL + + + +
Sbjct: 369 YKTVSPALISR-FKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS 427
Query: 461 PIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDD-EDKATR 519
+ V + +Q+ + + N L + V + DK++
Sbjct: 428 QVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSS 487
Query: 520 KDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRH 579
+ + + S F + + + I + A
Sbjct: 488 SNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYK---ITSEALLVTQQLV 544
Query: 580 SIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR 639
+ L FD D + L D D A + + L
Sbjct: 545 KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVK--ERAISCMGQIICNLGDNLG 602
Query: 640 RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGIN 699
L L + + R + K L + + ++ + + L
Sbjct: 603 SDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPI----LASFLRK 658
Query: 700 ANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQ 759
+ G L + L + + + + + + L+ + + ++A+S L + +
Sbjct: 659 NQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAK 718
Query: 760 STGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSH 819
++ + +L L+ ++ L+ + + + L
Sbjct: 719 VYPSSLSKISG--SILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRML 776
Query: 820 GEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVV 879
+ S + H Q + V + + S S +
Sbjct: 777 TGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLAL 836
Query: 880 GSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQ 939
SL + + L L V+ + F + + +K ++ LG++ ++
Sbjct: 837 LSLGEVGHHIDLSGQLELKSVILEAFSSP---SEEVKSAASYALGSISVGNLPEYLPFVL 893
Query: 940 EL--------FSLISELWSSFSLPATNRTYRGLP-VLHLVQQLCLALNDEFR-------- 982
+ + L+ L S + + + L+ + C + R
Sbjct: 894 QEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLG 953
Query: 983 ----THLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFK 1038
+LP L + V + T+ +D + + ++ +
Sbjct: 954 KLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLE 1013
Query: 1039 VDAPVDIRRAAIETLTRLIPRVQ--VTGHISSLVHHL 1073
D +++RR A+ T + + +++ HL
Sbjct: 1014 -DPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHL 1049
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.3 bits (217), Expect = 6e-18
Identities = 110/1030 (10%), Positives = 275/1030 (26%), Gaps = 117/1030 (11%)
Query: 168 YRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVE----------- 216
+R A ++ E+ +++ + + + V I L D V+ AV+
Sbjct: 19 FRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE 78
Query: 217 ---------------------------ALRACLRVIEKRETRWRVQWYY--RMFEATQDG 247
L+ + + + + ++
Sbjct: 79 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSA 138
Query: 248 LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPR 307
+ + V +L + ++L G +++ + + +L L VR L
Sbjct: 139 IAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGH 198
Query: 308 IAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHL 367
+ + + ++ ++ + + + + ++ + YL I +
Sbjct: 199 LVMSCGNIVFVDLIEHLLSELSKN-DSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLV 257
Query: 368 REAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVS 427
+ + + + R + PHV +++I +
Sbjct: 258 VKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINIC-----------------LK 300
Query: 428 IPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQ 487
+ P D + + + ++ +V A +
Sbjct: 301 YLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVR----RAAAKCLDA 356
Query: 488 TLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRS 547
++ + + + +++ + ++ + D L+ + S+ +
Sbjct: 357 VVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAME 416
Query: 548 NRTG--GKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQ--ADCLSA 603
+ + +V+ L + T + L Q +
Sbjct: 417 QGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPG 476
Query: 604 IFAALNDEDFDVR---EYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ-----SSAD 655
I +LND+ + + L +P P ++ + ++ + +S
Sbjct: 477 IIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEA 536
Query: 656 NKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDL 715
++ K++ L + PYI + + RL + + + + +G +
Sbjct: 537 LLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA---ADIDQEVKERAISCMGQI 593
Query: 716 ARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLL 775
G + + + + +E L + R V L + S +
Sbjct: 594 ICNLGDNLGSDLPNTLQIFLERLKNE---ITRLTTVKALTLIAGSPLKID--LRPVLGEG 648
Query: 776 GLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQP 835
+L + + + L L I+ + + + Q
Sbjct: 649 VPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQM 708
Query: 836 MDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVP 895
F L + +S S +N L+ ++R P L + G +
Sbjct: 709 AISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLG 768
Query: 896 YLPKVLPDLFHTVRTCDDYLKDYITWK-----LGTLVSIVRQHIRKYLQELFSLISELWS 950
Y +L L V + L ++ + L + + + + S
Sbjct: 769 Y-MDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRS 827
Query: 951 SFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHL----PVILPCCIQVLSDAERCNDYT 1006
+ S+ G H+ L L + L N
Sbjct: 828 TDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPE 887
Query: 1007 YVLDILHTLE-------------------VFGGTLDEHMHLLLPALIRLFKVDAPVDIRR 1047
Y+ +L + L ++ + L++ + A R
Sbjct: 888 YLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCE-CAEEGTRN 946
Query: 1048 AAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFI 1107
E L +L +L+ LK L + R V A+ + +
Sbjct: 947 VVAECLGKLTLI-----DPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLL 1001
Query: 1108 PSIHKLLLKH 1117
+ LK
Sbjct: 1002 KNCIGDFLKT 1011
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.5 bits (163), Expect = 1e-11
Identities = 72/730 (9%), Positives = 182/730 (24%), Gaps = 83/730 (11%)
Query: 23 LDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESND 82
D + L+ L + E + + + ++
Sbjct: 389 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPL----TMLQSQVPNIVKALHKQMKEKS 444
Query: 83 AAENLGALRAIDELIDVALGENA-SKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA 141
+ EL++V G + ++ + + + A L +
Sbjct: 445 VKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCN 504
Query: 142 GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAI-- 199
+ + GD A+L+ +++ + + + I
Sbjct: 505 HSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKD 564
Query: 200 -------WVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNA 252
+ D V+ERA+ + + + E ++ + R
Sbjct: 565 LFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLT 624
Query: 253 PVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFL 312
V ++ + E I+ +L R ++L S L +
Sbjct: 625 TVKALTLIAG------SPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNY 678
Query: 313 RDRFVTNYLKICMNHILTVLRIP--AERDSGFIALGEMAGALDGELFHYL----PTITSH 366
D + ++ + ++ L +A L +
Sbjct: 679 SDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGL 738
Query: 367 LREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITV 426
+R + ++ + +R L ++S + T + I
Sbjct: 739 VRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAK 798
Query: 427 SIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLAL 486
+ +L + + S++ + L+L
Sbjct: 799 CVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIR-------------------LLALLSL 839
Query: 487 QTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASR 546
+ + ++ + + A+ + + + F
Sbjct: 840 GEVGHH--IDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLP--EYLPFVLQE 895
Query: 547 SNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFA 606
++ L+ L E + A+V V + + +
Sbjct: 896 ITSQPKRQYLLLHSLKEIISSASVVGLKPYVE--------------------NIWALLLK 935
Query: 607 ALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLL 666
+ R G+L+ +P +LP L+ +L S + R +
Sbjct: 936 HCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYL---------ISGSSYARSSVVTAV 986
Query: 667 GCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQY 726
I + + I P + + L + + + LVT A +R
Sbjct: 987 KFTISDHPQPIDPLLKNCIGDFLKTLEDP-----DLNVRRVALVTFNSAAHNKPSLIRDL 1041
Query: 727 ISELMPLIVE 736
+ ++P +
Sbjct: 1042 LDTVLPHLYN 1051
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.2 bits (152), Expect = 3e-10
Identities = 113/958 (11%), Positives = 261/958 (27%), Gaps = 89/958 (9%)
Query: 923 LGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFR 982
LG LVS V+++ ++ + + S + + GL + + +
Sbjct: 69 LGPLVSKVKEYQ---VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA 125
Query: 983 THLPVILPCCIQVLSDAERCNDYTYVLDILHTL-EVFGGTLDEHMHLLLPALIRLFKVDA 1041
I ++ E + LDI+ + GG L +L L+
Sbjct: 126 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT-SP 184
Query: 1042 PVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGE 1101
+ +R+ I L L+ + + H L + + + + + ++ G
Sbjct: 185 RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 244
Query: 1102 DFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLILGSTAAQQLSRRVPVEVISDPLN 1161
++ I L++K + E E + A + RR P EV
Sbjct: 245 RIGEYLEKIIPLVVKF-CNVDDDELREYCI----------QAFESFVRRCPKEVYPHVST 293
Query: 1162 DVDSDPYEDGTDAQKQLRGHQASQRSTKEDWAEWMRHLSIELLKESPSPALRTCARLAQL 1221
++ K L +++ M + +
Sbjct: 294 IINI--------CLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQ--------------- 330
Query: 1222 QPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNLAEFMEHDE 1281
+ ++ W A ++ P + L++ F E +E
Sbjct: 331 ---GSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISR--FKEREE 385
Query: 1282 KPLPIDIRLLGALAEKCRAFAKALHYKE-MEFEGARSNRMDANPVAVVEALIHI--NNQL 1338
+L ++ R L + ME + + +V+AL +
Sbjct: 386 NVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV 445
Query: 1339 HQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRM 1398
+ +LT L L + + +L ++ + L +
Sbjct: 446 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSS-------SSNLKIDALSCL 498
Query: 1399 RCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDE 1458
+ + + + P + + A + ++
Sbjct: 499 YVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKV------------ 546
Query: 1459 SKLRGLGNTAANGDGSSNGTFFRAVL--LVRRGKVLESYERAYSNMVRVQQ--LSELEEV 1514
+R L ++ F + L E ERA S M ++ L
Sbjct: 547 --IRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD 604
Query: 1515 IDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLK 1574
+ + + I G+ +++ L ++ + LK
Sbjct: 605 LPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALK 664
Query: 1575 FASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKR-- 1632
+L I +L + + V + + +L +
Sbjct: 665 LGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSL 724
Query: 1633 KEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDE 1692
+ + + L P++Q A +++ V + + P
Sbjct: 725 SKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQS 784
Query: 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHS 1752
+ +Y + +C +A + + + + G
Sbjct: 785 TALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGH 844
Query: 1753 IACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARI 1812
++ ++ F+ +EEV+ A +++ LP ++ I
Sbjct: 845 HID-------LSGQLELKSVILEAFSSP-SEEVKSAASYALGSISVGNLPEYLPFVLQEI 896
Query: 1813 HSNNR-------AVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDK 1863
S + +++E+I S V + + + + LL C+ R E + K
Sbjct: 897 TSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGK 954
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.8 bits (195), Expect = 2e-15
Identities = 67/545 (12%), Positives = 143/545 (26%), Gaps = 31/545 (5%)
Query: 591 FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLE 650
FD + + + A D VR A+ ++ Y+ + L +
Sbjct: 209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM 268
Query: 651 QSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLV 710
+S D + + C+ + I A R E T G + ++
Sbjct: 269 KSDIDEVALQ----GIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324
Query: 711 TVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNE 770
+ L+ A + ++ L + + Y +
Sbjct: 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRD 384
Query: 771 YPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSG 830
+ + V+ M L + + + +
Sbjct: 385 AAVMA-----FGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439
Query: 831 QHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMG 890
D + L VA N SLA + +
Sbjct: 440 PEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFS---SLAEAAYEAADVADDQEEPAT 496
Query: 891 LGCVPYLPKVLPDLFHTVRTCDDY---LKDYITWKLGTLVSIVRQHIRKYLQELFSLISE 947
++ L T D + L+ L +V + +Q+ +I E
Sbjct: 497 YCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIME 556
Query: 948 LWSSF----------SLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLS 997
S + L L L + + V++ +++
Sbjct: 557 RLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQ 616
Query: 998 DAERCNDYT--YVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTR 1055
++ + +EV GG ++M P L K A + AA+ +
Sbjct: 617 STAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGD 676
Query: 1056 LI--PRVQVTGHISSLVHHLKLVLDGKN--DELRKDAVDALCCLAHALGEDFTIFIPSIH 1111
L + + ++ L L +N ++ + +A A+G +F ++ +
Sbjct: 677 LCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVL 736
Query: 1112 KLLLK 1116
L +
Sbjct: 737 NTLQQ 741
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (129), Expect = 1e-07
Identities = 97/765 (12%), Positives = 217/765 (28%), Gaps = 99/765 (12%)
Query: 69 QLYDRISGLLESNDAAENL--GALRAI----DELIDVALGENASKV-SKFSNYMRTVFEV 121
+L ++ + + ++ E++ L AI ++ L + ++++ + MR
Sbjct: 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPS 187
Query: 122 KRDREILVLASKVLGHLARAGGAMTADEVEFQ-VKMALDWLRGDRVEYRRFAAVLILKEM 180
+ + A+ L + A E E + + R AA+ L ++
Sbjct: 188 NNVK---LAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI 244
Query: 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240
++ + AI + + E A++ + V ++
Sbjct: 245 MSLYYQYMETYMGPALFAITIEAMKS--DIDEVALQGIEFWSNVCDE--------EMDLA 294
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
EA++ P H+ + L +++ E + D +
Sbjct: 295 IEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDE-------NDDDDDWNPCKA 347
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDG---ELF 357
L +A D + + + I ++ P R + +L
Sbjct: 348 AGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 403
Query: 358 HYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTL 417
+ L E + A VG I +
Sbjct: 404 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND----------------- 446
Query: 418 VDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLN 477
+ + L+ + + + S ++A A + + +
Sbjct: 447 ----VYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSS 502
Query: 478 GSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGV 537
VQ L+T R + ++L A +S++ + + K ++ +
Sbjct: 503 FELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVL 562
Query: 538 SFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQ 597
S S+R + L L L D +
Sbjct: 563 QMESHIQSTSDRI--QFNDLQSLLCATLQNVLRKVQHQDALQI----------SDVVM-- 608
Query: 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNK 657
L +F + V+E A+ L E L + L L ++ A+ +
Sbjct: 609 -ASLLRMFQST-AGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGL-KNYAEYQ 665
Query: 658 CREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLAR 717
+ L+G L R + I P+ + + L+ L N + + +L GD+A
Sbjct: 666 VCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNE---NVHRSVKPQILSVFGDIAL 722
Query: 718 VGGFGMRQYISELMPLIVEAL----------LDGAAVTKREVAVSTLGQVVQS------- 760
G ++Y+ ++ + +A + RE + +VQ
Sbjct: 723 AIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQEN 782
Query: 761 ---TGYVITPYNEYPQLLGLLLKMLNGE-LVWSTRREVLKVLGIM 801
++ P +L + + E ++G +
Sbjct: 783 VHPDVMLVQPR--VEFILSFIDHIAGDEDHTDGVVACAAGLIGDL 825
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 4e-05
Identities = 109/883 (12%), Positives = 237/883 (26%), Gaps = 130/883 (14%)
Query: 170 RFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPT--LAVRERAVEALRACLRVIEK 227
AA L+ A F V ++ L +P R A ++ L +
Sbjct: 18 LEAAQKFLERAAVENLPTFLVELSR-------VLANPGNSQVARVAAGLQIKNSLTSKDP 70
Query: 228 RETRWRVQWYYRMFEATQDGL------GRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE 281
Q + + + + + + V + E ++++ E
Sbjct: 71 DIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACA--EIPVNQWPE 128
Query: 282 VAEIVLRYLEHRDRL--VRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERD 339
+ ++ + + + ++ S + I + + + + I+ +R +
Sbjct: 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSN 188
Query: 340 SGFIALGEMAGAL------DGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAM 393
+ +A + + I + EA + + AL + I
Sbjct: 189 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248
Query: 394 GPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLL--------DCISF 445
ME ++ L + + + + + Q ++ D +
Sbjct: 249 YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE 308
Query: 446 VLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARD 505
SK + A PI + + D + P + A L D +
Sbjct: 309 HTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVL 368
Query: 506 SVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKL 565
+ +DAA+ + + + L+E +
Sbjct: 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-----------VIQAMPTLIELM 417
Query: 566 LI--AAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVA 623
V D I L D +LA L + L+ E V
Sbjct: 418 KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAP--LLQCLIEGLSAEP-RVASNVCWAF 474
Query: 624 GRLSEKNPAYV----------LPALRRHLIQLLTYL-----EQSSADNKCREESAKLLGC 668
L+E L ++ L N R + + L
Sbjct: 475 SSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLME 534
Query: 669 LIRNCERLIRPYIAPIHKALVARLLEGTGINAN----------NGIISGVLVTVGDLAR- 717
+++N + P + ++ RL + + ++ N + S + T+ ++ R
Sbjct: 535 IVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRK 594
Query: 718 VGGFGMRQYISELMPLIVEALLDGA-AVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLG 776
V Q +M ++ A + +E A+ + +V+ G Y
Sbjct: 595 VQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY--MEAFKP 652
Query: 777 LLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPM 836
L L + + ++G + +I P
Sbjct: 653 FLGIGLKNYAEYQVCLAAVGLVGDL------------------------CRALQSNIIPF 688
Query: 837 DEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY 896
+ M L +E+ + +V ++ I ++G Y
Sbjct: 689 CDEVMQLLLENLGNENVHRSVKPQ-----------------ILSVFGDIALAIGGEFKKY 731
Query: 897 LPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPA 956
L VL L + D + L L R+ E ++ I +
Sbjct: 732 LEVVLNTLQQASQAQVDKSDYDMVDYLNEL--------RESCLEAYTGIVQGLKGDQENV 783
Query: 957 TNRTYRGLPVL-HLVQQLCLALNDEFRTHLPVILPCCIQVLSD 998
P + ++ + DE T ++ C ++ D
Sbjct: 784 HPDVMLVQPRVEFILSFIDHIAGDEDHTD--GVVACAAGLIGD 824
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.3 bits (181), Expect = 1e-13
Identities = 97/815 (11%), Positives = 236/815 (28%), Gaps = 75/815 (9%)
Query: 47 LRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELI-DVALGENA 105
+R + + + + L ++ LL+S D GA A+ ++ D A ++
Sbjct: 104 IRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDS 163
Query: 106 SKVSKFSNYMRTVFEV---KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR 162
+ + N M F +I A + + ++ +
Sbjct: 164 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALA- 222
Query: 163 GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACL 222
GD R L + E H+ V+ + +D V A E
Sbjct: 223 GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLA 282
Query: 223 RVIEKRE----------------TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGE 266
++ ++ + ++ I
Sbjct: 283 EQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRT 342
Query: 267 LLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMN 326
+ + E + + + + D +R + L +A+ RD + + L +
Sbjct: 343 VAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKE 402
Query: 327 HILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACV 386
+ ++SG + LG +A + YLP + HL + ++ ++ +
Sbjct: 403 LLFHH--EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTL 460
Query: 387 GNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFV 446
A + L ++D+ +++ + S T+++ +
Sbjct: 461 SRYAHWVVSQPPDTYL----KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY 516
Query: 447 LSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDS 506
L+ + + N++ + + L S L L+
Sbjct: 517 LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI------QMLMPPLIQK 570
Query: 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRT-GGKRRRLIEELVEKL 565
+ D++ + L C + F + R ++ L + ++
Sbjct: 571 WNMLKDED----KDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNA 626
Query: 566 LIAAVADADVTVRHSIFSSLYG-----NRGFDDFLAQADCLSAIFAALNDEDFDVREYAI 620
D L G + +A+++ L+ ++ + D+ +VR+ +
Sbjct: 627 QPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSF 686
Query: 621 SVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680
++ G L++ +V P + + L T L + +G + ++PY
Sbjct: 687 ALLGDLTKACFQHVKPCIADFMPILGTNLNPEFIS--VCNNATWAIGEISIQMGIEMQPY 744
Query: 681 IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD 740
I + LV + N ++ +T+G L V + + + + +L +
Sbjct: 745 IPMVLHQLVEIINRP---NTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRN 801
Query: 741 GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVW-----STRREVL 795
+++ A + ++ ++ + + W R
Sbjct: 802 IRDNEEKDSAFRGICTMISVN---------PSGVIQDFIFFCDAVASWINPKDDLRDMFC 852
Query: 796 KVLG-------------IMGALDPHAHKRNQQLSG 817
K+L +R G
Sbjct: 853 KILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYG 887
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.6 bits (174), Expect = 7e-13
Identities = 102/704 (14%), Positives = 216/704 (30%), Gaps = 50/704 (7%)
Query: 45 LALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGEN 104
AL E + R A ++ DR+ + + R D+ +VAL
Sbjct: 219 FALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNI---VEYMLQRTQDQDENVAL--- 272
Query: 105 ASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGD 164
+ + T+ E +++LV L + G + ++ +
Sbjct: 273 -----EACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIP 327
Query: 165 RVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRV 224
E + +A+ + D I +R+ + AL V
Sbjct: 328 DSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANV 387
Query: 225 IEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAE 284
+ + + +L +G + + M+ E+
Sbjct: 388 YRDELLPHILPLLKELLFHHEW--------VVKESGILVLGAIAEGCMQGMIPYLPELIP 439
Query: 285 IVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLR--IPAERDSGF 342
+++ L + LVR L R AH++ + YLK M +L + +++
Sbjct: 440 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAAC 499
Query: 343 IALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVR 402
A + EL YL I L A + + K L +G +A ++G +
Sbjct: 500 SAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPE- 558
Query: 403 GLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPI 462
+ L L+ + L P LL+C+S V + + S P P+
Sbjct: 559 ------YIQMLMPPLIQKWNMLKDEDKDLFP-----LLECLSSVAT-ALQSGFLPYCEPV 606
Query: 463 RGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDA 522
+N+ Q+ Q +F L + + L + E R +
Sbjct: 607 YQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNI 666
Query: 523 ALCCCKLVANSFSGVSFTQFGA-SRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSI 581
+ + + V + F + + + +L + ++V ++
Sbjct: 667 LTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNA 726
Query: 582 FSSL-----YGNRGFDDFLAQADCLSAIFAALNDEDFD--VREYAISVAGRLSEKNPAYV 634
++ ++ L + +N + + E GRL P V
Sbjct: 727 TWAIGEISIQMGIEMQPYIPM--VLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEV 784
Query: 635 LPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLE 694
P L++ + T L DN+ ++ + + + +I + A+ + +
Sbjct: 785 APMLQQFIRPWCTSLRNIR-DNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINP 843
Query: 695 GTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEAL 738
+ + +L + VG R++ + + E L
Sbjct: 844 KDDLRD---MFCKILHGFKNQ--VGDENWRRFSDQFPLPLKERL 882
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.9 bits (159), Expect = 5e-11
Identities = 95/698 (13%), Positives = 212/698 (30%), Gaps = 71/698 (10%)
Query: 483 QLALQTL-----ARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSF--- 534
L+ L A F + + +F + + + D R + + +
Sbjct: 64 SLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQN 123
Query: 535 -------------SGVSFTQFGA----------SRSNRTGGKRRRLIEELVEKLLIAAVA 571
S T GA S R + ++ K L
Sbjct: 124 WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL-QFFK 182
Query: 572 DADVTVR---HSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSE 628
+ +R + + +R L +FA DE+ +VR+ L E
Sbjct: 183 HSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLE 242
Query: 629 KNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKAL 688
+LP + + +L + + L C+ ++ ++ + L
Sbjct: 243 VRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVL 302
Query: 689 VARL----LEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAV 744
V + ++ + + + + D+ I E D +
Sbjct: 303 VNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEI 362
Query: 745 TKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGAL 804
+ + + + +LL +L +L L + ++GA+
Sbjct: 363 DDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAI 422
Query: 805 DPHAHKRNQQLSGSHGE-VTRAASDSGQHIQP--MDEFPMDLWPSFATSEDYYSTVAINS 861
+ + + SD ++ + D Y +
Sbjct: 423 AEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTE 482
Query: 862 LMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITW 921
L++ + D + + + + + VPYL +L L +
Sbjct: 483 LLKRILDSN-KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYD 541
Query: 922 KLGTLVSIVRQHIRK--YLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALND 979
+GTL V H+ K Y+Q L + + W+ + P+L + + AL
Sbjct: 542 AIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL----FPLLECLSSVATALQS 597
Query: 980 EFRTHLPVILPCCIQVL----------------SDAERCNDYTYVLDILHTL-EVFGGTL 1022
F + + C+ ++ +A + LD+L L E GG +
Sbjct: 598 GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNI 657
Query: 1023 DEHMH--LLLPALIRLFKVDAPVDIRRAAIETLTRLIPRV--QVTGHISSLVHHLKLVLD 1078
++ + +L + + + D ++R+++ L L V I+ + L L+
Sbjct: 658 EQLVARSNILTLMYQCMQ-DKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN 716
Query: 1079 GKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLK 1116
+ + +A A+ ++ +G + +IP + L++
Sbjct: 717 PEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVE 754
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (145), Expect = 2e-09
Identities = 105/854 (12%), Positives = 252/854 (29%), Gaps = 128/854 (14%)
Query: 281 EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDS 340
+ L + L+R ++ L+ IA + + L + + + +
Sbjct: 88 FIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDS--EDYNTCEG 145
Query: 341 GFIALG----EMAGALDGELF-HYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGP 395
F AL + A LD ++ L + + K A+ACV +
Sbjct: 146 AFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 205
Query: 396 VMEPHVRGLLDIMFSAGLS--TTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYS 453
+ H+ + +F+ + + + V + + + I + +
Sbjct: 206 ALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQD 265
Query: 454 QARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDD 513
Q A + + +Q + L + K D+ D ++L D
Sbjct: 266 QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDI-----DIILLKGDV 320
Query: 514 EDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVE-KLLIAAVAD 572
E+ T D+ +F SR+ + EE + +
Sbjct: 321 EEDETIPDSE------------QDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTI 368
Query: 573 ADVTVRHS--IFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKN 630
+D +R + N D+ L L + L ++ V+E I V G ++E
Sbjct: 369 SDWNLRKCSAAALDVLANVYRDELLPH--ILPLLKELLFHHEWVVKESGILVLGAIAEGC 426
Query: 631 PAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNC-ERLIRPYIAPIHKALV 689
++P L + L+ L A R + L + Y+ P+ L+
Sbjct: 427 MQGMIPYLPELIPHLIQCLSDKKAL--VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELL 484
Query: 690 ARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREV 749
R+L ++N + L + Y++ ++ +V A +
Sbjct: 485 KRIL-----DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQH-KNLLI 538
Query: 750 AVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAH 809
+G + S G+ + L+ L++ N +
Sbjct: 539 LYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWN--------------------MLKDED 578
Query: 810 KRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDP 869
K L V A+ P E P + + +++ +
Sbjct: 579 KDLFPLLECLSSV---ATALQSGFLPYCE------PVYQRCVNLVQKTLAQAMLNNAQPD 629
Query: 870 SLASYHQKVVGSLMFIFKSMGLGCVPYLPK------VLPDLFHTVRTCDDYLKDYITWKL 923
+ + + + + + G + + +L ++ ++ ++ L
Sbjct: 630 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALL 689
Query: 924 GTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRT 983
G L QH++ + + ++ + + N + ++ + + E +
Sbjct: 690 GDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNN------ATWAIGEISIQMGIEMQP 743
Query: 984 HLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPV 1043
++P++L +++++ P
Sbjct: 744 YIPMVLHQLVEIINRPNT----------------------------------------PK 763
Query: 1044 DIRRAAIETLTRLIPRV--QVTGHISSLVHH-LKLVLDGKNDELRKDAVDALCCLAH--- 1097
+ T+ RL +V + + + + +++E + A +C +
Sbjct: 764 TLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP 823
Query: 1098 -ALGEDFTIFIPSI 1110
+ +DF F ++
Sbjct: 824 SGVIQDFIFFCDAV 837
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.8 bits (148), Expect = 7e-10
Identities = 51/532 (9%), Positives = 148/532 (27%), Gaps = 21/532 (3%)
Query: 591 FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLE 650
+ + + + A ED +V+ A ++ K ++ P + + L L
Sbjct: 216 MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATM 275
Query: 651 QSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLV 710
+S ++K + + + + L + + I + +L
Sbjct: 276 KSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLT 334
Query: 711 TVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNE 770
+ + + + L + + +
Sbjct: 335 RQNEDPEDDDWNVSMSAGACLQLFAQ---------NCGNHILEPVLEFVEQNITADNWRN 385
Query: 771 YPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSG 830
+ +++G V + L + L + ++ + + R A
Sbjct: 386 REAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETT--AWCIGRIADSVA 443
Query: 831 QHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMG 890
+ I P P + +D+ VA N I+ + + G
Sbjct: 444 ESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDG 502
Query: 891 LGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWS 950
L + + + + +Y T + + + + L + S+ +
Sbjct: 503 LIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLT 562
Query: 951 SFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCN-DYTYVL 1009
+ + ++ + +++ ++L + +
Sbjct: 563 LEDAQSLQELQSNIL--TVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFY 620
Query: 1010 DILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRV--QVTGHIS 1067
I G ++++ P L++ + A+ + + + +
Sbjct: 621 AISALAASLGKGFEKYLETFSPYLLKALN-QVDSPVSITAVGFIADISNSLEEDFRRYSD 679
Query: 1068 SLVHHLKLVLDGKN--DELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKH 1117
++++ L ++ N EL+ + +A +G DF ++ I L +
Sbjct: 680 AMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAA 731
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.0 bits (120), Expect = 1e-06
Identities = 33/250 (13%), Positives = 83/250 (33%), Gaps = 21/250 (8%)
Query: 289 YLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAE--RDSGFIALG 346
+ + + + +A L F YL+ ++L L + +
Sbjct: 606 LEKKDSAFIEDDVFYAISALAASLGKGFE-KYLETFSPYLLKALNQVDSPVSITAVGFIA 664
Query: 347 EMAGALDGELFHYLPTITSHLREAIAPRRGKPSL--EALACVGNIARAMGPVMEPHVRGL 404
+++ +L+ + Y + + L + I+ + L L+ G+IA +G P++ +
Sbjct: 665 DISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDI 724
Query: 405 LDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLS--KSHYSQARPAATPI 462
+ + +A +T + + +L + LD +++ P I
Sbjct: 725 MALCVAA-QNTKPENGTLEALDYQIKVLEAV----LDAYVGIVAGLHDKPEALFPYVGTI 779
Query: 463 RGNVMNIPQQVSDLNGSAPVQLALQTLARF--NFKGHDLLEFARDSVVLYL-------DD 513
+ + + + A + A+ + F + +F V+
Sbjct: 780 FQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQL 839
Query: 514 EDKATRKDAA 523
+AT+ A
Sbjct: 840 FSQATKDTAR 849
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.7 bits (114), Expect = 7e-06
Identities = 75/707 (10%), Positives = 190/707 (26%), Gaps = 54/707 (7%)
Query: 68 DQLYDRISGLLESNDAAEN-LGALRAIDELIDVALGENASKVSKFSNYMRTVFEV----K 122
+L + + +L A+ + + A ++ + VS +N + + + +
Sbjct: 133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTE 192
Query: 123 RDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDW-LRGDRVEYRRFAAVLILKEMA 181
+ + + A L E E M + + AA L ++
Sbjct: 193 TSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIM 252
Query: 182 ENASTVFNVHVAEFVDAIWVA-LRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240
T ++ + + A+ +A ++ P V VE
Sbjct: 253 SKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAY---------- 302
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
+ +P+ S + +L ++ +++ N + + + +
Sbjct: 303 ----ELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGAC---- 354
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYL 360
L + + N R F ++ + + +Y+
Sbjct: 355 ---LQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD--KVQRTYYV 409
Query: 361 PTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA 420
+ + + + C+G IA ++ ++P + L+
Sbjct: 410 HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ------QHLPGVVQACLIGL 463
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480
+ V+ I + ++ A N ++ SA
Sbjct: 464 QDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSA 523
Query: 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFT 540
+ + F D + + ++ + A +L +N + +
Sbjct: 524 LTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVL--- 580
Query: 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVR---HSIFSSLYGNRGFDDFLAQ 597
A+ ++ + + L+ + S+L + G
Sbjct: 581 ---AAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL 637
Query: 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNK 657
+ ALN D V A+ +S + L + +A +
Sbjct: 638 ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRE 697
Query: 658 CREESAKLLGCLIRNCERLIRPYIAPIHKALVARL------LEGTGINANNGIISGVLVT 711
+ + G + N PY+ I VA ++ ++ VL
Sbjct: 698 LKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDA 757
Query: 712 VGDLARVGGFG---MRQYISELMPLIVEALLDGAAVTKREVAVSTLG 755
+ + Y+ + I + D ++ + + +G
Sbjct: 758 YVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVG 804
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 3e-06
Identities = 74/569 (13%), Positives = 166/569 (29%), Gaps = 51/569 (8%)
Query: 556 RLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCL-SAIFAALNDEDFD 614
R EL+ L + D D V ++ L CL + + E+
Sbjct: 45 RTRSELLP-FLTDTIYDED-EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETV 102
Query: 615 VREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE 674
VR+ A+ +S ++ L H + L+ L + L
Sbjct: 103 VRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSR-TSACGLFSVCYPRVS 158
Query: 675 RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLI 734
++ + + L + + + +G+ A+V + + +
Sbjct: 159 SAVKAELRQYFRNLCS--------DDTPMVRRAAASKLGEFAKVLE---LDNVKSEIIPM 207
Query: 735 VEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREV 794
L + R +AV + + P + L+ L+ + W R V
Sbjct: 208 FSNLASDEQDSVRLLAVEACVNI-----AQLLPQEDLEALVMPTLRQAAEDKSWRVRYMV 262
Query: 795 LKVLGIMGALDPHAHKRNQQLSG------------------SHGEVTRAASDSGQHIQPM 836
+ + + E S + M
Sbjct: 263 ADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM 322
Query: 837 DEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY 896
+ + + + + + + +M + + + ++ + K
Sbjct: 323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLN 382
Query: 897 LPKVLPDL--FHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSL 954
+ L + +R L I VR I +Y+ L + + L
Sbjct: 383 IISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKL 442
Query: 955 PATNRTYRGLPVLHLVQQLCLALNDEFRT-----HLPVILPCCIQVLSDAERCNDYTYVL 1009
+ + V + + L I+P + + D + T +
Sbjct: 443 NSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLF 502
Query: 1010 DILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSL 1069
I EV G D +LP ++R+ D ++R ++L ++ P + + S +
Sbjct: 503 CINVLSEVCG--QDITTKHMLPTVLRMAG-DPVANVRFNVAKSLQKIGPILDNSTLQSEV 559
Query: 1070 VHHLKLVLDGKNDELRKDAVDALCCLAHA 1098
L+ + ++ +++ A +AL L+ A
Sbjct: 560 KPILEKLTQDQDVDVKYFAQEALTVLSLA 588
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 0.003
Identities = 31/154 (20%), Positives = 54/154 (35%), Gaps = 10/154 (6%)
Query: 967 LHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTL--DE 1024
+ + + LAL E RT +LP + D + +L + L F + E
Sbjct: 31 IKKLSTIALALGVE-RT-RSELLPFLTDTIYDEDEV-----LLALAEQLGTFTTLVGGPE 83
Query: 1025 HMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDEL 1084
++H LLP L L V+ V +R A+E+L + + + V +K + G
Sbjct: 84 YVHCLLPPLESLATVEETV-VRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTS 142
Query: 1085 RKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHR 1118
R A + + + L
Sbjct: 143 RTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDD 176
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 0.004
Identities = 75/620 (12%), Positives = 164/620 (26%), Gaps = 55/620 (8%)
Query: 22 SLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESN 81
SL + ++ +L N L K + A LG E R +L ++ +
Sbjct: 8 SLYPIAVLIDEL---RNEDVQLRLNSIKKLSTIALALGVE---RTRSELLPFLTDTIYDE 61
Query: 82 DAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA 141
D L + + G + + + E +V K + L
Sbjct: 62 DEVL-LALAEQLGTFTTLVGGPEYVHC-----LLPPLESLATVEETVV-RDKAVESLRAI 114
Query: 142 GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWV 201
+ ++E + L G R +A + V + AE
Sbjct: 115 SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPR---VSSAVKAELRQYFRN 171
Query: 202 ALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQD------GLGRNAPVH 255
D T VR A L +V+E + + + + + + +
Sbjct: 172 LCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231
Query: 256 SIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITS--LLPRIAHFLR 313
+ ++ + + V +V + V IT L+P + ++
Sbjct: 232 QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMK 291
Query: 314 DRFVTNYLKICMNHILTVLRIPAERDSGFI---ALGEMAGALDGELFHYLPTITSHLREA 370
D + A+ I L + + H + S +
Sbjct: 292 DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGL 351
Query: 371 IAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPS 430
++E L + + + + +P+
Sbjct: 352 SPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR-----QLSQSLLPA 406
Query: 431 LLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLA 490
++ +D ++ + + ++ + A + A L
Sbjct: 407 IVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLK 466
Query: 491 RF--NFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSN 548
+ F V+ D + R L C +++
Sbjct: 467 KLVEKFGKEWAHATIIPKVLAMSGDPNYLHRM-TTLFCINVLSEVCG------------- 512
Query: 549 RTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG-NRGFDDFLAQADCLSAIFAA 607
+ + + + ++ D VR ++ SL D+ Q++ +
Sbjct: 513 ------QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 566
Query: 608 LNDEDFDVREYAISVAGRLS 627
D+D DV+ +A LS
Sbjct: 567 TQDQDVDVKYFAQEALTVLS 586
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 0.002
Identities = 75/520 (14%), Positives = 154/520 (29%), Gaps = 33/520 (6%)
Query: 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE 660
+ + LNDED V A + +LS+K + ++ + Q++ D +
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78
Query: 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
+A L L + E L+ + + ALV L + ++ + T+ +L
Sbjct: 79 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSP-----VDSVLFYAITTLHNLLLHQE 133
Query: 721 FGMRQYISE-LMPLIVEALLDGAAVTKREVA--VSTLGQVVQSTGYVITPYNEYPQLLGL 777
+ +V L + L Q + +I L+ +
Sbjct: 134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193
Query: 778 LLKMLNGELVWST------------RREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRA 825
+ +L+W+T + + G M AL H +Q+L + R
Sbjct: 194 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253
Query: 826 ASDSGQHIQPMDEFPMDLWPSFATS------EDYYSTVAINSLMRILRDPSLASYHQKVV 879
SD+ + M+ L + + + + +
Sbjct: 254 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 313
Query: 880 GSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQ 939
+ P + + + + L +V ++ L
Sbjct: 314 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 373
Query: 940 ELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALND-EFRTHLPVILPCCIQVLSD 998
+ + + +G + LVQ L A D + RT + ++ +
Sbjct: 374 KATVGLIRNLALCPANHAPLREQGA-IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 432
Query: 999 AERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIP 1058
E T L IL + +P ++L +I+R A L L
Sbjct: 433 EEIVEGCTGALHILARDVHNRIVIRGLN--TIPLFVQLLYSPIE-NIQRVAAGVLCELAQ 489
Query: 1059 RVQVTGHISSL--VHHLKLVLDGKNDELRKDAVDALCCLA 1096
+ I + L +L +N+ + A L ++
Sbjct: 490 DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1880 | |||
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.96 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.96 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.96 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.94 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.94 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.91 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.87 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.82 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.8 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.3 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.28 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.19 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.19 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.18 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.03 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.83 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 98.75 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 98.71 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 98.59 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 98.57 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.52 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.4 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.28 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.27 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.25 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 97.96 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 97.8 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.58 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 97.33 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 97.17 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 96.96 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 96.7 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.7 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 94.72 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 94.2 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 94.04 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 93.69 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 93.47 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 92.69 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 92.54 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 91.72 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 91.21 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 91.11 | |
| d1w9ca_ | 321 | Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax | 91.04 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 90.92 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 90.78 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 90.54 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 89.52 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 89.4 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 89.09 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 88.6 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 88.42 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 87.06 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 86.6 | |
| d2b6ca1 | 213 | Hypothetical protein EF3068 {Enterococcus faecalis | 85.99 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 85.82 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 85.72 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 84.63 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 83.57 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 83.47 | |
| d1w9ca_ | 321 | Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax | 83.47 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 83.41 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 81.86 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 81.27 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.3e-26 Score=326.75 Aligned_cols=881 Identities=14% Similarity=0.150 Sum_probs=558.0
Q ss_pred HHHHHHHHhhh-cCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCC-CC
Q 000194 68 DQLYDRISGLL-ESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGG-AM 145 (1880)
Q Consensus 68 ~~l~~~i~~l~-~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g-~~ 145 (1880)
..+...+...+ +..+...|.+++..+..++...+....+........+...+. +.+..|++.|..+++.++...+ ..
T Consensus 129 ~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~-~~~~~vR~~A~~~l~~l~~~~~~~~ 207 (1207)
T d1u6gc_ 129 KKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT-SPRLAVRKRTIIALGHLVMSCGNIV 207 (1207)
T ss_dssp HHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGG-CSSHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 34444444444 346677888889888888776533333444555555555554 5678899999999999988632 23
Q ss_pred chhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 000194 146 TADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVI 225 (1880)
Q Consensus 146 ~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1880)
..++ ++.+++.+..+.....|.+++.+++.++...|..+.+|++.+++.++..+.+.++.+|+.+..++..+....
T Consensus 208 ~~~~----~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~ 283 (1207)
T d1u6gc_ 208 FVDL----IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC 283 (1207)
T ss_dssp CTTH----HHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred HHHH----HHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhC
Confidence 3334 444555555455556778889999999999999999999999999999999999999999999998876543
Q ss_pred hhhchhhHHHHHHHHHHHHHhhcc------------------------------------CCCChhHHHHHHHHHHHHHH
Q 000194 226 EKRETRWRVQWYYRMFEATQDGLG------------------------------------RNAPVHSIHGSLLAVGELLR 269 (1880)
Q Consensus 226 ~~r~~~~~~~~~~~~l~~~~~~l~------------------------------------~~~~~~~~~~al~~l~~ll~ 269 (1880)
.. ....++..+++.+...+. +...|.+|.+++.+++.++.
T Consensus 284 ~~----~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~ 359 (1207)
T d1u6gc_ 284 PK----EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVS 359 (1207)
T ss_dssp TC----CCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHT
T ss_pred hh----hhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHH
Confidence 21 122233333333322111 11248899999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh------------------hhHHHHHHHHHHHHHHHh
Q 000194 270 NTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR------------------DRFVTNYLKICMNHILTV 331 (1880)
Q Consensus 270 ~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~------------------~~f~~~yl~~~~~~Ll~~ 331 (1880)
..++.+.+++.++++.++..+.++++.||..++.++..+..... ......+++.+++.+...
T Consensus 360 ~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~ 439 (1207)
T d1u6gc_ 360 TRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQ 439 (1207)
T ss_dssp TCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHH
Confidence 88888888888999999988899999999999998888753221 112234556677777776
Q ss_pred hcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCC--CchHHHHHHHHHHHhCC-CchHHHHHHHH
Q 000194 332 LRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP--SLEALACVGNIARAMGP-VMEPHVRGLLD 406 (1880)
Q Consensus 332 L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~--~~~a~~~l~~la~~~g~-~~~~~l~~ll~ 406 (1880)
+.... .|..++.+++.++...+..+.+|++.+++.+...+.+..... +..++.+++.+....++ .+.|++..+++
T Consensus 440 l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~ 519 (1207)
T d1u6gc_ 440 MKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVP 519 (1207)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHH
T ss_pred hcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhh
Confidence 65443 578899999999999998889999999999999886654332 34678888888887776 57888888887
Q ss_pred HHHhcC--CCHHHH-HHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHH
Q 000194 407 IMFSAG--LSTTLV-DALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQ 483 (1880)
Q Consensus 407 ~l~~~~--ls~~l~-~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (1880)
.++..- ...... +++.. +..+..++....
T Consensus 520 ~~~~~~~~~~~~i~~~al~~----------------~~~l~~~l~~~~-------------------------------- 551 (1207)
T d1u6gc_ 520 PVVACVGDPFYKITSEALLV----------------TQQLVKVIRPLD-------------------------------- 551 (1207)
T ss_dssp HHHHHHTCSSHHHHHHHHHH----------------HHHHHHHHCCSS--------------------------------
T ss_pred hHHHHHccccHHHHHHHHHH----------------HHHHHHHhhhhc--------------------------------
Confidence 766431 111111 11111 111111111000
Q ss_pred HHHHhhcccccCCCcchhhHHHH---Hhhhcc--CCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHH
Q 000194 484 LALQTLARFNFKGHDLLEFARDS---VVLYLD--DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI 558 (1880)
Q Consensus 484 ~Al~~L~~~~~~~~~l~~~v~~~---~~~~l~--~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1880)
.-.+..+.+++..+ +...+. +.+.++|..|..+++.++...... ....+
T Consensus 552 ---------~~~~~~~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~-----------------~~~~~ 605 (1207)
T d1u6gc_ 552 ---------QPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN-----------------LGSDL 605 (1207)
T ss_dssp ---------SCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG-----------------CCTHH
T ss_pred ---------cchhhhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhh-----------------hHHHH
Confidence 00011122333322 223332 456789998888877776533211 12234
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHhccC------CCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcc
Q 000194 559 EELVEKLLIAAVADADVTVRHSIFSSLYG------NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPA 632 (1880)
Q Consensus 559 ~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~------~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~ 632 (1880)
..+++.++.. .. ++..|..++.++.. ...+.+++ .+.++.+...+.+.+..+|..++.+++.+....+.
T Consensus 606 ~~~l~~l~~~-l~--~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~ 680 (1207)
T d1u6gc_ 606 PNTLQIFLER-LK--NEITRLTTVKALTLIAGSPLKIDLRPVL--GEGVPILASFLRKNQRALKLGTLSALDILIKNYSD 680 (1207)
T ss_dssp HHHHHHHHHH-TT--SSSHHHHHHHHHHHHTTCSSCCCCHHHH--HHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHH-hc--chhhHHHHHHHHHHHHHhccchhHHHHH--HHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccc
Confidence 5555555543 22 23355555554421 12223333 35677788888999999999999999999888777
Q ss_pred cccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCC-------------
Q 000194 633 YVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGIN------------- 699 (1880)
Q Consensus 633 ~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~------------- 699 (1880)
.+.+.....+...+..+..+ .+...+..++.+++.+++..+....++...+++.++..+.++....
T Consensus 681 ~~~~~~~~~~l~~l~~ll~~-~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s~l~~~~~~~~~~~~~~~l 759 (1207)
T d1u6gc_ 681 SLTAAMIDAVLDELPPLISE-SDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQAL 759 (1207)
T ss_dssp TCCHHHHHHHHTTCGGGSCT-TCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred cchhHHHhhHHHhhcccccc-ccHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Confidence 66665554444444444444 5778888899999999998888888887777777777665431100
Q ss_pred ----------------------------CChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHH
Q 000194 700 ----------------------------ANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAV 751 (1880)
Q Consensus 700 ----------------------------~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al 751 (1880)
........+..+++.+....+....+.+..++.. ..........|..|+
T Consensus 760 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~al 836 (1207)
T d1u6gc_ 760 VVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQD---VKNSRSTDSIRLLAL 836 (1207)
T ss_dssp HTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTT---TTTTTCCHHHHHHHH
T ss_pred HhccccccchHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HhcccchHHHHHHHH
Confidence 0000111223333333333333222222211111 111222345778889
Q ss_pred HHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCC
Q 000194 752 STLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQ 831 (1880)
Q Consensus 752 ~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (1880)
.+||.+....+.. ..+++.+.+++.+.++ ++++|.+|..++|.++.-.+
T Consensus 837 ~~Lge~~~~~~~~-----~~~~l~~~l~~~l~~~-~~~vr~aAa~aLg~l~~~~~------------------------- 885 (1207)
T d1u6gc_ 837 LSLGEVGHHIDLS-----GQLELKSVILEAFSSP-SEEVKSAASYALGSISVGNL------------------------- 885 (1207)
T ss_dssp HHHHHHHHHSCCC-----SCTHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHTH-------------------------
T ss_pred HHHHHHHHhcccc-----chHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhH-------------------------
Confidence 9999988776542 2356788888888754 78999999999998863111
Q ss_pred CCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCC-CCCCcchhhHHHHHHHhc
Q 000194 832 HIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG-CVPYLPKVLPDLFHTVRT 910 (1880)
Q Consensus 832 ~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~-~~~~l~~iip~ll~~l~~ 910 (1880)
+..++.+++.+..... .....+.++..++...+.. ..+|.+.+++.++..+..
T Consensus 886 ------------------------~~~lp~il~~l~~~~~--~~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~ 939 (1207)
T d1u6gc_ 886 ------------------------PEYLPFVLQEITSQPK--RQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCEC 939 (1207)
T ss_dssp ------------------------HHHHHHHHHHHHSCGG--GHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCC
T ss_pred ------------------------HHHhHHHHHHHhcCch--HHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHhCC
Confidence 2223445555544332 2345677888888776654 346777777777666666
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHH
Q 000194 911 CDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILP 990 (1880)
Q Consensus 911 ~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p 990 (1880)
.++..|..+...+|.++..-. ..+++.+.+.+...+ +.....++.++..+....+..+.+|+..++|
T Consensus 940 ~~~~vr~~~a~~lg~L~~~~~-------~~~lp~L~~~l~~~~------~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~ 1006 (1207)
T d1u6gc_ 940 AEEGTRNVVAECLGKLTLIDP-------ETLLPRLKGYLISGS------SYARSSVVTAVKFTISDHPQPIDPLLKNCIG 1006 (1207)
T ss_dssp SSTTHHHHHHHHHHHHHHSSG-------GGTHHHHTTTSSSSC------HHHHHHHHHHTGGGCCSSCCTHHHHHHHHST
T ss_pred CcHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 667788888888887764222 223444444444333 1112255666555555667789999999999
Q ss_pred HHHHhcccccccCchhhHHHHHHHHHHHh-cchhhhhhhhHHHHHHhhcC-----------------CCcHHHHHHHHHH
Q 000194 991 CCIQVLSDAERCNDYTYVLDILHTLEVFG-GTLDEHMHLLLPALIRLFKV-----------------DAPVDIRRAAIET 1052 (1880)
Q Consensus 991 ~ll~~l~~~~~~~~~~~~~~il~~l~~~g-~~~~~~~~~ilp~l~~~l~~-----------------~~~~~vr~~ai~~ 1052 (1880)
.++..+++.+... |..+...+.++..-. ..+.+|+..++|.+...... +.-.++|+.|.++
T Consensus 1007 ~ll~~l~d~~~~v-R~~al~~l~~~~~~~p~li~~~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~ 1085 (1207)
T d1u6gc_ 1007 DFLKTLEDPDLNV-RRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFEC 1085 (1207)
T ss_dssp TTHHHHSSSSTHH-HHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhccchhheeeeecCCceeecCCcHHHHHHHHHH
Confidence 9999998754221 333444444443333 34578888899988764321 1246899999999
Q ss_pred HHhhccc----ccccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhc----cccccchhHHHHHHHh
Q 000194 1053 LTRLIPR----VQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALG----EDFTIFIPSIHKLLLK 1116 (1880)
Q Consensus 1053 l~~l~~~----~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g----~~f~~fip~i~~~l~~ 1116 (1880)
+..+... .++.+|+.+++ .-|.+ +.++|-.+...|..|+.... ..+-.++|.+.+++..
T Consensus 1086 ~~~~l~~~~~~~~~~~~~~~~~----~gl~d-~~di~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 1152 (1207)
T d1u6gc_ 1086 MYTLLDSCLDRLDIFEFLNHVE----DGLKD-HYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTT 1152 (1207)
T ss_dssp HHHHHHSSCSSSCHHHHHHHHH----HTTSS-CHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHC
T ss_pred HHHHHHHhhhhcCHHHHHHHHH----hcccc-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhc
Confidence 9988754 45555555544 55554 56899999999999888654 4445567777777764
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.1e-25 Score=322.58 Aligned_cols=957 Identities=14% Similarity=0.142 Sum_probs=601.9
Q ss_pred HHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc
Q 000194 25 ALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGE 103 (1880)
Q Consensus 25 ~~~~l~~~l~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~ 103 (1880)
.+..|++.+.++..+.|- |...|...+......++.+... .+.+.+.++++.++...|..|+.++..|+..-.
T Consensus 4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~----~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~-- 77 (1207)
T d1u6gc_ 4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSER----KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK-- 77 (1207)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHH----HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC--
T ss_pred hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHH----HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc--
Confidence 578899999888555553 6555555543222233444343 456667778888899999999999999976532
Q ss_pred chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC------CCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHH
Q 000194 104 NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG------GAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLIL 177 (1880)
Q Consensus 104 ~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~------g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l 177 (1880)
...+..+.+.|...+. +++..++..++.++..+.... +..........++.+...+....+...|..|+.++
T Consensus 78 -~~~~~~l~~~L~~~l~-~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l 155 (1207)
T d1u6gc_ 78 -EYQVETIVDTLCTNML-SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIM 155 (1207)
T ss_dssp -HHHHHHHHHHHHHHTT-CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred -HhhHHHHHHHHHHHhc-CCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 2345566677666553 457788899998888776531 22334445555666666555666677899999999
Q ss_pred HHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHH
Q 000194 178 KEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSI 257 (1880)
Q Consensus 178 ~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 257 (1880)
..++...|..+.++..++++.++..+.|+++.||..|..+++.++..... .++..+++.+...+..+..+..+
T Consensus 156 ~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~-------~~~~~~~~~ll~~l~~~~~~~~~ 228 (1207)
T d1u6gc_ 156 ADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN-------IVFVDLIEHLLSELSKNDSMSTT 228 (1207)
T ss_dssp HHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----------CTTHHHHHHHHHHHTCSSCSC
T ss_pred HHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHccCCCHHHH
Confidence 99999999999999999999999999999999999999999887654331 23344555555555444345567
Q ss_pred HHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC--
Q 000194 258 HGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP-- 335 (1880)
Q Consensus 258 ~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~-- 335 (1880)
++++.+++.+.+..|..+.++++++++.++..+++.+..+|+.++.++..++...+..+.+ |++.+++.++..+...
T Consensus 229 ~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~-~~~~ii~~~l~~l~~dp~ 307 (1207)
T d1u6gc_ 229 RTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYP-HVSTIINICLKYLTYDPN 307 (1207)
T ss_dssp TTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHH-HHHHHHHHHTTCCCCC--
T ss_pred HHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhh-hHHHHHHHHHHHHhcCcc
Confidence 8899999999998888888899999999999999999999999999999999887776654 7777777765544210
Q ss_pred -------------------------------------CCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCC
Q 000194 336 -------------------------------------AERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP 378 (1880)
Q Consensus 336 -------------------------------------~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~ 378 (1880)
+.|..|..+++.++...++.+.++.+.+++.+...+.+....+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~v 387 (1207)
T d1u6gc_ 308 YNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENV 387 (1207)
T ss_dssp ----------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHH
T ss_pred hhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 1245789999999988888777888888888888886655555
Q ss_pred CchHHHHHHHHHHHhCCCc-------------------hHHHHHHHHHHHhc--CCCHHHH----HHHHHHHHhCCCChH
Q 000194 379 SLEALACVGNIARAMGPVM-------------------EPHVRGLLDIMFSA--GLSTTLV----DALEQITVSIPSLLP 433 (1880)
Q Consensus 379 ~~~a~~~l~~la~~~g~~~-------------------~~~l~~ll~~l~~~--~ls~~l~----~~l~~i~~~~p~l~~ 433 (1880)
+..++.+++.+....++.. .++++.+++.+... ..+...+ ..+..+....|....
T Consensus 388 r~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~ 467 (1207)
T d1u6gc_ 388 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALT 467 (1207)
T ss_dssp HHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTG
T ss_pred HHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHH
Confidence 6688899998887765421 12333344444332 1233322 344555555554332
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc--ccCCCcchhhHHH---HHh
Q 000194 434 TIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF--NFKGHDLLEFARD---SVV 508 (1880)
Q Consensus 434 ~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~--~~~~~~l~~~v~~---~~~ 508 (1880)
.....++..+...+... .........|+..++.+ ......+.+++.. .+.
T Consensus 468 ~~l~~~~~~i~~~l~~~-------------------------~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~ 522 (1207)
T d1u6gc_ 468 QHIPVLVPGIIFSLNDK-------------------------SSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVV 522 (1207)
T ss_dssp GGHHHHHHHHHHHTTCS-------------------------SSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHH
T ss_pred HhhHhhHHHHHHHHhcc-------------------------cchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHH
Confidence 22223333332222110 00111223455555544 2223334444433 334
Q ss_pred hhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHh-cCCChhHHHHHHHhccC
Q 000194 509 LYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAV-ADADVTVRHSIFSSLYG 587 (1880)
Q Consensus 509 ~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~-~d~~~~vR~~~l~~l~~ 587 (1880)
..+.++.+.++..|..++..+........ . .........+..+++.++.... .+.+.++|..++.+++.
T Consensus 523 ~~~~~~~~~i~~~al~~~~~l~~~l~~~~------~----~~~~~~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~ 592 (1207)
T d1u6gc_ 523 ACVGDPFYKITSEALLVTQQLVKVIRPLD------Q----PSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQ 592 (1207)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHCCSS------S----CCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHHHHHhhhhc------c----chhhhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 55677888999888777666553211100 0 0001123445555555444332 46788999988877641
Q ss_pred -----CCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcc-cccHHHHHHHHHHHHHHhcCCCChHhHHH
Q 000194 588 -----NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPA-YVLPALRRHLIQLLTYLEQSSADNKCREE 661 (1880)
Q Consensus 588 -----~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~-~v~p~l~~~l~~~l~~l~~~~~~~~~r~~ 661 (1880)
...+.+++ +..++.+...++++. .|..++..++.++..... .+.|.+...+..+...+.. .+...|..
T Consensus 593 l~~~~~~~~~~~~--~~~l~~l~~~l~~~~--~r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~~~l~~--~~~~~r~~ 666 (1207)
T d1u6gc_ 593 IICNLGDNLGSDL--PNTLQIFLERLKNEI--TRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRK--NQRALKLG 666 (1207)
T ss_dssp HHHHTGGGCCTHH--HHHHHHHHHHTTSSS--HHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTS--CCHHHHHH
T ss_pred HHHHhhhhhHHHH--HHHHHHHHHHhcchh--hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhccc--chHHHHHH
Confidence 01111111 345667777776644 688899999888765543 3557776665554444443 46778889
Q ss_pred HHHHHHHHHHhCcccccC-chHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhc
Q 000194 662 SAKLLGCLIRNCERLIRP-YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD 740 (1880)
Q Consensus 662 a~~~L~~l~~~~~~~~~p-y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d 740 (1880)
++.++..++...++.+.+ .++.++..+.+.+.+. +..+...++..++.++...+....++...+++.++..+.+
T Consensus 667 al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~-----d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s 741 (1207)
T d1u6gc_ 667 TLSALDILIKNYSDSLTAAMIDAVLDELPPLISES-----DMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRS 741 (1207)
T ss_dssp HHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTT-----CHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTC
T ss_pred HHHHHHHHHHhccccchhHHHhhHHHhhccccccc-----cHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHhcC
Confidence 999999999987765544 3455555555555543 6778888888999998888888889999999999998875
Q ss_pred CCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHH----HHHHHHHHcccCccchhhccccC
Q 000194 741 GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRRE----VLKVLGIMGALDPHAHKRNQQLS 816 (1880)
Q Consensus 741 ~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~----~l~~lg~lgaldp~~~~~~~~~~ 816 (1880)
.........++..+.......+ .+...++.++..+...+........+.. +.++++.+....+...
T Consensus 742 ~l~~~~~~~~~~~~~~~l~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~------- 811 (1207)
T d1u6gc_ 742 PLLQGGALSAMLDFFQALVVTG---TNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG------- 811 (1207)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTC---CTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCS-------
T ss_pred chhhhhhHHHHHHHHHHHHhcc---ccccchHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhH-------
Confidence 4222222223333222222222 2223345566666554433323333333 3344443321111000
Q ss_pred CCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHh-cCCChhhhHHHHHHHHHHHHHHhCCCCCC
Q 000194 817 GSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRIL-RDPSLASYHQKVVGSLMFIFKSMGLGCVP 895 (1880)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L-~d~s~~~~~~~~~~al~~i~~~~~~~~~~ 895 (1880)
...+..++... .+.+....+..++.++..+....+. +
T Consensus 812 ---------------------------------------~~~l~~~l~~~~~~~~~~~~~~~al~~Lge~~~~~~~---~ 849 (1207)
T d1u6gc_ 812 ---------------------------------------PAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDL---S 849 (1207)
T ss_dssp ---------------------------------------HHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCC---C
T ss_pred ---------------------------------------HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccc---c
Confidence 00000000101 1111112333455666777776665 3
Q ss_pred CcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHH-
Q 000194 896 YLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLC- 974 (1880)
Q Consensus 896 ~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~- 974 (1880)
..+.+.+.++..+.+.++.+|..+...+|.+.. .+...|+|.++..+.. .. ..+..++..+..+.
T Consensus 850 ~~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~~---~~~~~~lp~il~~l~~----~~-------~~~~~ll~al~ei~~ 915 (1207)
T d1u6gc_ 850 GQLELKSVILEAFSSPSEEVKSAASYALGSISV---GNLPEYLPFVLQEITS----QP-------KRQYLLLHSLKEIIS 915 (1207)
T ss_dssp SCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH---HTHHHHHHHHHHHHHS----CG-------GGHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---hhHHHHhHHHHHHHhc----Cc-------hHHHHHHHHHHHHHH
Confidence 556777888888888888889888888887653 3455666666555432 11 01113344443333
Q ss_pred HHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHH
Q 000194 975 LALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLT 1054 (1880)
Q Consensus 975 ~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~ 1054 (1880)
......+.+|++.+++.++..+.+.+. .-|..+.. |+..+.. -+...++|.+...+..+ +..+|..++.+++
T Consensus 916 ~~~~~~~~~~~~~i~~~L~~~~~~~~~-~vr~~~a~---~lg~L~~---~~~~~~lp~L~~~l~~~-~~~~r~~ai~~l~ 987 (1207)
T d1u6gc_ 916 SASVVGLKPYVENIWALLLKHCECAEE-GTRNVVAE---CLGKLTL---IDPETLLPRLKGYLISG-SSYARSSVVTAVK 987 (1207)
T ss_dssp SSCSTTTHHHHHHHHHHHTTCCCCSST-THHHHHHH---HHHHHHH---SSGGGTHHHHTTTSSSS-CHHHHHHHHHHTG
T ss_pred hcchhhhHHHHHHHHHHHHHHhCCCcH-HHHHHHHH---HHHHHHh---cCHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 333456888999999999887765432 12333333 3333221 12234678888877654 6789999999999
Q ss_pred hhccc--ccccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHhC
Q 000194 1055 RLIPR--VQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKH 1117 (1880)
Q Consensus 1055 ~l~~~--~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~fip~i~~~l~~~ 1117 (1880)
.+... ..+.+|+..++.+++..+++++.++|..|+.+|..++.+.+.-..+|+|.+.+.+...
T Consensus 988 ~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~l~~llp~l~~~ 1052 (1207)
T d1u6gc_ 988 FTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNE 1052 (1207)
T ss_dssp GGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHT
T ss_pred HHHHhcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 88775 3356788889999999999999999999999999999998888889999999987763
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.2e-29 Score=350.60 Aligned_cols=661 Identities=15% Similarity=0.164 Sum_probs=451.9
Q ss_pred HHHHHHHHHHHcCCCC-chhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhcccc
Q 000194 23 LDALNRILADLCTHGN-PKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVAL 101 (1880)
Q Consensus 23 ~~~~~~l~~~l~s~~~-~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~ 101 (1880)
|+++..|++.+.+.+. .+++|...|..++++....+..+...+..+.+...+.+.+++++...|.+++.+++.++....
T Consensus 125 pell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~ 204 (888)
T d1qbkb_ 125 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT 204 (888)
T ss_dssp TTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhh
Confidence 4566666666665543 444566667777766555555555555666677888888888888999999999999876542
Q ss_pred CcchhHHHHHHHHHHhhccc--CCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHH
Q 000194 102 GENASKVSKFSNYMRTVFEV--KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKE 179 (1880)
Q Consensus 102 ~~~~~~~~~~~~~L~~~l~~--~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~ 179 (1880)
...... +..++..++.. +.+.++++.++++++.++.........+++..++.++..+ .+.++..|..|+.+|..
T Consensus 205 ~~~~~~---~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~-~~~~e~v~~~a~ef~~~ 280 (888)
T d1qbkb_ 205 QALMLH---IDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRT-QDQDENVALEACEFWLT 280 (888)
T ss_dssp STTCSH---HHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTTTTTTTTTTTTT-TSSCHHHHHHHHHHHCC
T ss_pred HHHHHH---HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHH
Confidence 222222 33344444432 4567899999999999887543333333333333333323 34567788899999888
Q ss_pred HHhh--cCccchhchHHHHHHHHHHhcCCch-------------------------------------------------
Q 000194 180 MAEN--ASTVFNVHVAEFVDAIWVALRDPTL------------------------------------------------- 208 (1880)
Q Consensus 180 la~~--~p~~l~~~l~~i~~~i~~~l~D~~~------------------------------------------------- 208 (1880)
+++. ....+.++++.+++.+...+.++..
T Consensus 281 ~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (888)
T d1qbkb_ 281 LAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDD 360 (888)
T ss_dssp CCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchh
Confidence 8764 4566778888887776655543322
Q ss_pred -----------hHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHH
Q 000194 209 -----------AVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMS 277 (1880)
Q Consensus 209 -----------~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~ 277 (1880)
.+|.+|..++..+..... .+.++.+++.+...+.++ +|..|++|+.+||.+.+++.+.+.+
T Consensus 361 ~~~~~~~~~~~~~r~~a~~~L~~l~~~~~-------~~il~~~l~~l~~~l~s~-~~~~reaa~~alg~i~eg~~~~~~~ 432 (888)
T d1qbkb_ 361 EIDDDDTISDWNLRKCSAAALDVLANVYR-------DELLPHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIP 432 (888)
T ss_dssp TTCCCSTTSCCSSHHHHHHHSTTTTTTCC-------SSSHHHHHHHHHHTTTSS-SHHHHHHHHHHHHHHTTTSHHHHTT
T ss_pred hhhhhhhhhhhhHHHHHHHHHhhHhhhhH-------HHHHHHHHHHHHHhhccc-hhHHHHHHHHHhhhhhhhHHHHhcc
Confidence 256666665554332211 123566777777778776 5999999999999999988888999
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh
Q 000194 278 RYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE 355 (1880)
Q Consensus 278 ~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~ 355 (1880)
+++++++.++..+++.++.||.++++++++++.+......+.|+..+++.++..+.++. .+..|+.+++.++...+..
T Consensus 433 ~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~ 512 (888)
T d1qbkb_ 433 YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE 512 (888)
T ss_dssp THHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTS
T ss_pred cchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999877766667788999999999887654 4678999999999999999
Q ss_pred hhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCc--hHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHhCCCC
Q 000194 356 LFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVM--EPHVRGLLDIMFSA-G-LSTTLVDALEQITVSIPSL 431 (1880)
Q Consensus 356 ~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~--~~~l~~ll~~l~~~-~-ls~~l~~~l~~i~~~~p~l 431 (1880)
+.||++.+++.+...+.....+....++.|++.++..+|+.+ .++++.+++.+... . ...
T Consensus 513 l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---------------- 576 (888)
T d1qbkb_ 513 LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKD---------------- 576 (888)
T ss_dssp SGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCT----------------
T ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhccc----------------
Confidence 999999999999999866544434567899999999999865 45777777765431 0 000
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc-ccCCCcchhhHHHHHhhh
Q 000194 432 LPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF-NFKGHDLLEFARDSVVLY 510 (1880)
Q Consensus 432 ~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~-~~~~~~l~~~v~~~~~~~ 510 (1880)
+......+++.++.+ ...+..+.++...+....
T Consensus 577 ----------------------------------------------~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~ 610 (888)
T d1qbkb_ 577 ----------------------------------------------EDKDLFPLLECLSSVATALQSGFLPYCEPVYQRC 610 (888)
T ss_dssp ----------------------------------------------TCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHH
T ss_pred ----------------------------------------------chHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHH
Confidence 000011122223222 111233334433322111
Q ss_pred ccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCC
Q 000194 511 LDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRG 590 (1880)
Q Consensus 511 l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~ 590 (1880)
+.--...+.. ........... . . .....+...+. +...+.+.++ ..
T Consensus 611 ~~~l~~~l~~----~~~~~~~~~~~----------~--~---~~~~~~~~~l~-------------~l~~l~~~l~--~~ 656 (888)
T d1qbkb_ 611 VNLVQKTLAQ----AMLNNAQPDQY----------E--A---PDKDFMIVALD-------------LLSGLAEGLG--GN 656 (888)
T ss_dssp HHHHHHHHHH----HHHHHHCTTTS----------C--C---CCTHHHHHHHH-------------HHHHHHHHHT--TT
T ss_pred HHHHHHHHHH----HHHHhcccccc----------c--c---hhHHHHHHHHH-------------HHHHHHHHhh--hh
Confidence 1100000000 00000000000 0 0 00111111110 1112233343 35
Q ss_pred cchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHH
Q 000194 591 FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLI 670 (1880)
Q Consensus 591 fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~ 670 (1880)
|.+++.+..+++.+..+++|.+.+||+.|+.++|+++...+..+.|++..++..++..+.+. ....+..|++++|+++
T Consensus 657 ~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~--~~~v~~~a~~~ig~ia 734 (888)
T d1qbkb_ 657 IEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE--FISVCNNATWAIGEIS 734 (888)
T ss_dssp THHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGG--GHHHHHHHHHHHHHHH
T ss_pred hhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHHH
Confidence 55655555678888999999999999999999999999999999999998877777766553 5678899999999999
Q ss_pred HhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHH
Q 000194 671 RNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVA 750 (1880)
Q Consensus 671 ~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~A 750 (1880)
.+.++.+.||++.+++.|++.++++. ....+..+++.|+|.|+...++.+.||++++++.++..|.+..+.+.++.|
T Consensus 735 ~~~~~~~~py~~~il~~L~~il~~~~---~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~ 811 (888)
T d1qbkb_ 735 IQMGIEMQPYIPMVLHQLVEIINRPN---TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSA 811 (888)
T ss_dssp HHTGGGGGGGSHHHHHHHHHHHTCTT---CCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHcCCC---ccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcHHHHHH
Confidence 99999999999999999999998753 367799999999999999999999999999999999999887777889999
Q ss_pred HHHHHHHHhhcCcccccCCcchHHHHHHHHHhcC-CCCHHHHHHHHHHHHHH
Q 000194 751 VSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNG-ELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 751 l~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~-~~~~~vr~~~l~~lg~l 801 (1880)
+.+|+.+++.....+. +.+...+-.+.+. ...++++.+..++|+..
T Consensus 812 ~~g~~~~i~~~p~~~~-----~~l~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 858 (888)
T d1qbkb_ 812 FRGICTMISVNPSGVI-----QDFIFFCDAVASWINPKDDLRDMFCKILHGF 858 (888)
T ss_dssp HHHHHHHHHHCGGGTG-----GGHHHHHHHHTTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcHHHH-----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 9999999987654433 3444444444432 23678888888877654
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.7e-28 Score=335.59 Aligned_cols=824 Identities=13% Similarity=0.135 Sum_probs=512.5
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHH-HHhhcCcc
Q 000194 109 SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKE-MAENASTV 187 (1880)
Q Consensus 109 ~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~-la~~~p~~ 187 (1880)
.++...|.... +.|.++++.|.+.|.++...++ +... +..++.-+ ++.+...|.+|...|+. +..++...
T Consensus 11 ~ql~~~L~~~~--s~d~~~r~~A~~~L~~~~~~p~-----~~~~-L~~ll~~~-~~~~~~~R~~A~i~Lkn~i~~~w~~~ 81 (888)
T d1qbkb_ 11 QQILQLLKESQ--SPDTTIQRTVQQKLEQLNQYPD-----FNNY-LIFVLTKL-KSEDEPTRSLSGLILKNNVKAHFQNF 81 (888)
T ss_dssp HHHHHHHTTCC--HHHHHHHHHHTTSTTTSTTSTT-----TTTC-TTSSSTTT-SCSTTTHHHHTTGGGGGTHHHHTTCS
T ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhCCC-----HHHH-HHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhhccC
Confidence 34445554443 3467889988888777644322 1110 11111111 22233456666666654 44444433
Q ss_pred chhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q 000194 188 FNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGEL 267 (1880)
Q Consensus 188 l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~l 267 (1880)
=......|.+.++.+|+|+++.||..++.+++.+..... . ..| +.+++.+.+.+.+++ ..++++|+.+|+.+
T Consensus 82 ~~~~~~~Ik~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~---~---~~W-pell~~L~~~l~s~~-~~~~~~al~~L~~i 153 (888)
T d1qbkb_ 82 PNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGE---L---QNW-PDLLPKLCSLLDSED-YNTCEGAFGALQKI 153 (888)
T ss_dssp TTTCCHHHHHHHTTGGGCCCSSTTTTTTTTTHHHHTTTS---S---CSS-TTTSTTTTTSSTGGG-SSCSSSSSTTTHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhC---c---cch-HHHHHHHHHHhCCCC-HHHHHHHHHHHHHH
Confidence 334566777889999999999999999988877654211 1 112 346666666676553 56788999999988
Q ss_pred HHcchhhhH-----HHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC--CCcch
Q 000194 268 LRNTGEFMM-----SRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP--AERDS 340 (1880)
Q Consensus 268 l~~~~~~~~-----~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~--~~r~~ 340 (1880)
.+..++.+. ..+..++..++...++.++.+|..++.++..+....+..+. .+++.+++.+......+ ..|..
T Consensus 154 ~e~~~~~~~~~~~~~~~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~vr~~ 232 (888)
T d1qbkb_ 154 CEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALM-LHIDSFTENLFALAGDEEPEVRKN 232 (888)
T ss_dssp HGGGHHHHHTC---CCSTTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTC-SHHHHCSHHHHTTSSCCCSSSTTH
T ss_pred HHHhHHHhhHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHhcCCcchHHHHH
Confidence 874333222 22334677788888899999999999999888776665443 36677888887776544 45889
Q ss_pred HHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHH--hCCCchHHHHHHHHHHHhcCC--CHH
Q 000194 341 GFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARA--MGPVMEPHVRGLLDIMFSAGL--STT 416 (1880)
Q Consensus 341 a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~--~g~~~~~~l~~ll~~l~~~~l--s~~ 416 (1880)
++.+++.++...++.+.||++.+++.+...+.+...+.+..++++|..+++. ....+.++++.+++.+...-. ..+
T Consensus 233 ~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 312 (888)
T d1qbkb_ 233 VCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDID 312 (888)
T ss_dssp HHHTTTTTSCSCTTTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 9999999998888888899999888777666554433344677777666543 223466777777776654321 111
Q ss_pred HHHHHHHH--HHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccccc
Q 000194 417 LVDALEQI--TVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNF 494 (1880)
Q Consensus 417 l~~~l~~i--~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~ 494 (1880)
........ ....+.... .. .+............. ..... ...
T Consensus 313 ~~~~~~~~~~~~~~~~~~~-----------------~i---~~~~~~~~~~~~~~~--~~~~~----------~~~---- 356 (888)
T d1qbkb_ 313 IILLKGDVEEDETIPDSEQ-----------------DI---RPRFHRSRTVAQQHD--EDGIE----------EED---- 356 (888)
T ss_dssp HHHHTTTSSCCTTSCCCGG-----------------GC---CCCCCCCCCCCCCCT--TC---------------C----
T ss_pred HHHHhhhhhhhhhhhhhHH-----------------HH---HHHHHHHHHHHHHhh--hhhhh----------hcc----
Confidence 10000000 000000000 00 000000000000000 00000 000
Q ss_pred CCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCC
Q 000194 495 KGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADAD 574 (1880)
Q Consensus 495 ~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~ 574 (1880)
+...+ .........+.+|++|+.++..+...... .++..+++ ++...+.+++
T Consensus 357 ------~~~~~-~~~~~~~~~~~~r~~a~~~L~~l~~~~~~--------------------~il~~~l~-~l~~~l~s~~ 408 (888)
T d1qbkb_ 357 ------DDDDE-IDDDDTISDWNLRKCSAAALDVLANVYRD--------------------ELLPHILP-LLKELLFHHE 408 (888)
T ss_dssp ------HHHHT-TCCCSTTSCCSSHHHHHHHSTTTTTTCCS--------------------SSHHHHHH-HHHHTTTSSS
T ss_pred ------cchhh-hhhhhhhhhhhHHHHHHHHHhhHhhhhHH--------------------HHHHHHHH-HHHHhhccch
Confidence 00000 00001122345677666554444322211 11233332 3333456777
Q ss_pred hhHHHHHHHhccC--CC---CcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccc-cHHHHHHHHHHHHH
Q 000194 575 VTVRHSIFSSLYG--NR---GFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV-LPALRRHLIQLLTY 648 (1880)
Q Consensus 575 ~~vR~~~l~~l~~--~~---~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v-~p~l~~~l~~~l~~ 648 (1880)
+.+|.+++.+|+. .. .+.+++ +++++.++..++|+++.||..|++++|+++...+... .+++...+..++..
T Consensus 409 ~~~reaa~~alg~i~eg~~~~~~~~l--~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~ 486 (888)
T d1qbkb_ 409 WVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKR 486 (888)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHTTTH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHH
T ss_pred hHHHHHHHHHhhhhhhhHHHHhcccc--hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHH
Confidence 7777777666541 11 112223 4678889999999999999999999999987554332 23445555556666
Q ss_pred HhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCch--hhh
Q 000194 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGM--RQY 726 (1880)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~--~~~ 726 (1880)
+.+ .++++++.|+.+|..+++.++..+.||++.+++.++..+.+. .......+..+++.++...|..+ .+|
T Consensus 487 l~d--~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~-----~~~~~~~~~~al~~l~~~~~~~~~~~~~ 559 (888)
T d1qbkb_ 487 ILD--SNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY-----QHKNLLILYDAIGTLADSVGHHLNKPEY 559 (888)
T ss_dssp HSS--SCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTC-----CHHHHHHHHHHHHHHHHHHGGGGCSHHH
T ss_pred hcC--CCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHhhhccccchHH
Confidence 655 468899999999999999999999999999999999998764 55666677889999998877665 568
Q ss_pred HHhHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccC
Q 000194 727 ISELMPLIVEALLDGA-AVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALD 805 (1880)
Q Consensus 727 ~~~l~p~l~~~l~d~~-~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgald 805 (1880)
+..++|.+.+...... +...+...+.+++.++...|..+.||. +.+.+.+++.+... +.... .....
T Consensus 560 ~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~--~~~~~~~~~~l~~~----l~~~~------~~~~~ 627 (888)
T d1qbkb_ 560 IQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYC--EPVYQRCVNLVQKT----LAQAM------LNNAQ 627 (888)
T ss_dssp HHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHH--HHHHHHHHHHHHHH----HHHHH------HHHHC
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhH--HHHHHHHHHHHHHH----HHHHH------HHhcc
Confidence 8899999998776322 223445678889999888887777764 34555555544211 10000 00000
Q ss_pred ccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHH
Q 000194 806 PHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFI 885 (1880)
Q Consensus 806 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i 885 (1880)
+. .. + ... .+ ....+...+..+
T Consensus 628 ~~---------------------~~------~----------~~~----~~-----------------~~~~~l~~l~~l 649 (888)
T d1qbkb_ 628 PD---------------------QY------E----------APD----KD-----------------FMIVALDLLSGL 649 (888)
T ss_dssp TT---------------------TS------C----------CCC----TH-----------------HHHHHHHHHHHH
T ss_pred cc---------------------cc------c----------chh----HH-----------------HHHHHHHHHHHH
Confidence 00 00 0 000 01 112334455566
Q ss_pred HHHhCCCCCCCcc--hhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccc
Q 000194 886 FKSMGLGCVPYLP--KVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRG 963 (1880)
Q Consensus 886 ~~~~~~~~~~~l~--~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~ 963 (1880)
++.+|..+.+++. .+++.++..+++.++.+|+.++..+|.++...++++.||++.+++.+.+.+..... + ..
T Consensus 650 ~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~-----~-v~ 723 (888)
T d1qbkb_ 650 AEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFI-----S-VC 723 (888)
T ss_dssp HHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGH-----H-HH
T ss_pred HHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCH-----H-HH
Confidence 6777777766654 47888999998888889999999999999999999999999999999988864431 1 12
Q ss_pred hhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHh----cchhhhhhhhHHHHHHhhcC
Q 000194 964 LPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG----GTLDEHMHLLLPALIRLFKV 1039 (1880)
Q Consensus 964 ~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g----~~~~~~~~~ilp~l~~~l~~ 1039 (1880)
..++.+++.++..++++|+||++.+++.+++.+++++ ..+.+...+..|+..++ ..+.+|+..++|..|+.+..
T Consensus 724 ~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~--~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~ 801 (888)
T d1qbkb_ 724 NNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN--TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRN 801 (888)
T ss_dssp HHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTT--CCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCC--ccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhcc
Confidence 2678899999999999999999999999999998753 23444445555655443 45667888899999988865
Q ss_pred CCcHHHHHHHHHHHHhhccc--ccccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhccc
Q 000194 1040 DAPVDIRRAAIETLTRLIPR--VQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGED 1102 (1880)
Q Consensus 1040 ~~~~~vr~~ai~~l~~l~~~--~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~ 1102 (1880)
-...+-|..|...+..+... ..+.+++..++..+... .+..++++.....+|..+...+|.+
T Consensus 802 ~~d~~ek~~~~~g~~~~i~~~p~~~~~~l~~~~~~i~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ 865 (888)
T d1qbkb_ 802 IRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASW-INPKDDLRDMFCKILHGFKNQVGDE 865 (888)
T ss_dssp SCCSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHTTC-SSCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCCcHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 43455688899999888764 12334445555444322 2245789999999999888888754
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=2e-21 Score=266.96 Aligned_cols=798 Identities=13% Similarity=0.134 Sum_probs=491.5
Q ss_pred CCHHHHHHHHHH-HcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhc--CCChhhhhhHHHHHhHh
Q 000194 21 GSLDALNRILAD-LCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLE--SNDAAENLGALRAIDEL 96 (1880)
Q Consensus 21 ~~~~~~~~l~~~-l~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~--s~~~~~r~~~i~ai~~L 96 (1880)
|+.+.+.+++.+ +.|++...++ |...|.. +..+++..|+..+. +.+. +.+...|..|+..+...
T Consensus 1 M~~~~~~~~L~~~~~s~d~~~r~~Ae~~L~~--------~~~~~~~~~~~~l~----~il~~~~~~~~~r~~A~i~lkn~ 68 (861)
T d2bpta1 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKK--------LSNDNFLQFAGLSS----QVLIDENTKLEGRILAALTLKNE 68 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHH--------HHHHCHHHHHHHHH----HHHTCTTSCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--------HHhcCchHHHHHHH----HHHHcCCCCHHHHHHHHHHHHHH
Confidence 778888999887 5788766665 5444433 33333444443333 3332 34566777666666665
Q ss_pred hccccCc-chhHH------------HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhh--CCCCchhHHHHHHHHHHhhh
Q 000194 97 IDVALGE-NASKV------------SKFSNYMRTVFEVKRDREILVLASKVLGHLARA--GGAMTADEVEFQVKMALDWL 161 (1880)
Q Consensus 97 i~~~~~~-~~~~~------------~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~--~g~~~~~~v~~~~~~~~~~l 161 (1880)
+...... ..... ..+-+.+...+. +.+..++..++.+++.++.. +...|+++++. +++.+
T Consensus 69 i~~~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~-~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~----L~~~~ 143 (861)
T d2bpta1 69 LVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALV-SIEPRIANAAAQLIAAIADIELPHGAWPELMKI----MVDNT 143 (861)
T ss_dssp TCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHH----HHHHT
T ss_pred hhcccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHH----HHHHh
Confidence 5432111 01111 111233334443 56889999999999999875 33467777555 44455
Q ss_pred cCCCcchhHHHHHHHHHHHHhhcCcc---chhchHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHhhhchhhHHHH
Q 000194 162 RGDRVEYRRFAAVLILKEMAENASTV---FNVHVAEFVDAIWVALR--DPTLAVRERAVEALRACLRVIEKRETRWRVQW 236 (1880)
Q Consensus 162 ~~~~~~~~R~aA~~~l~~la~~~p~~---l~~~l~~i~~~i~~~l~--D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~ 236 (1880)
.++..+..|.+|+.+++.+++..+.. +.+.+..++..++.++. +++..||.+|..++..++..+.... .....
T Consensus 144 ~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~--~~~~~ 221 (861)
T d2bpta1 144 GAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNM--EREGE 221 (861)
T ss_dssp STTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHH--TSHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhH--Hhhhh
Confidence 56666778999999999999887754 45667778888888775 5668999999999988776554211 11223
Q ss_pred HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHH-HHHhhcchhHHHHHHHHHhHhHhhhChhh
Q 000194 237 YYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIV-LRYLEHRDRLVRLSITSLLPRIAHFLRDR 315 (1880)
Q Consensus 237 ~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~l-l~~~~~~~~~Vr~~~~~~i~~la~~~~~~ 315 (1880)
...+++.+...+.+++ ++++.+++.++..++...++++.+++.+++..+ .....+.++.+|..++..+..++.....
T Consensus 222 ~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~- 299 (861)
T d2bpta1 222 RNYLMQVVCEATQAED-IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEID- 299 (861)
T ss_dssp HHHHHHHHHHHHTCSC-HHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHhHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH-
Confidence 4445555666666664 788999999999999988888899988866544 4445678889999988888776643111
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCC-------CchHHHHHHH
Q 000194 316 FVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP-------SLEALACVGN 388 (1880)
Q Consensus 316 f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~-------~~~a~~~l~~ 388 (1880)
+ ...... +..... .......++++.+++.+.+.+....... +..+..|+..
T Consensus 300 ----~----~~~~~~-~~~~~~-------------~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 357 (861)
T d2bpta1 300 ----I----AYELAQ-FPQSPL-------------QSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQL 357 (861)
T ss_dssp ----H----HHHHHH-CTTCSC-------------CCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHH
T ss_pred ----H----HHHHHh-hhhhHH-------------HHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 0 000111 111000 0001122344555555555553322111 0122333333
Q ss_pred HHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccC
Q 000194 389 IARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMN 468 (1880)
Q Consensus 389 la~~~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 468 (1880)
++...|..+.
T Consensus 358 ~~~~~~~~~~---------------------------------------------------------------------- 367 (861)
T d2bpta1 358 FAQNCGNHIL---------------------------------------------------------------------- 367 (861)
T ss_dssp HHHHHGGGGH----------------------------------------------------------------------
T ss_pred HHhhcchhhh----------------------------------------------------------------------
Confidence 3333332211
Q ss_pred CCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCcccc
Q 000194 469 IPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSN 548 (1880)
Q Consensus 469 ~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~ 548 (1880)
+.+...+...+.++++..|.+|..+++.+....
T Consensus 368 --------------------------------~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~--------------- 400 (861)
T d2bpta1 368 --------------------------------EPVLEFVEQNITADNWRNREAAVMAFGSIMDGP--------------- 400 (861)
T ss_dssp --------------------------------HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS---------------
T ss_pred --------------------------------hhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhc---------------
Confidence 222222334455567778877766655443210
Q ss_pred ccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhc
Q 000194 549 RTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSE 628 (1880)
Q Consensus 549 ~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~ 628 (1880)
........+ +++++.+...+.|+++.||..+..++|+++.
T Consensus 401 -----~~~~~~~~l-----------------------------------~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~ 440 (861)
T d2bpta1 401 -----DKVQRTYYV-----------------------------------HQALPSILNLMNDQSLQVKETTAWCIGRIAD 440 (861)
T ss_dssp -----CHHHHHHHH-----------------------------------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred -----chhhHHHHH-----------------------------------HHHHHHHHHHhcCcchhhhhHHHHHHHHHHH
Confidence 001111111 1346666777889999999999999999887
Q ss_pred CCccccc--HHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhC----cccccCchHHHHHHHHHHhccCCCCCCCh
Q 000194 629 KNPAYVL--PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNC----ERLIRPYIAPIHKALVARLLEGTGINANN 702 (1880)
Q Consensus 629 ~~p~~v~--p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~----~~~~~py~~~il~~ll~~l~~~~~~~~~~ 702 (1880)
..+..+. ..+...+..++.... ..+..+..++..+..++... .....++...++..++...... ....
T Consensus 441 ~~~~~~~~~~~~~~ll~~l~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~ 514 (861)
T d2bpta1 441 SVAESIDPQQHLPGVVQACLIGLQ---DHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI---DNEF 514 (861)
T ss_dssp HHGGGSCTTTTHHHHHHHHHHHHT---SCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS---CCGG
T ss_pred HhchhhhhHHhhhhhhHHHHhccc---cChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhh---hhhH
Confidence 6654332 223333333333332 34666777888877777653 3445677778888877766543 2367
Q ss_pred hHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHh
Q 000194 703 GIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKML 782 (1880)
Q Consensus 703 ~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L 782 (1880)
.++..++.+++.++...+..+.+++..+.+.+...+...-.. . ..... ....
T Consensus 515 ~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~----------------~----~~~~~--~~~~------ 566 (861)
T d2bpta1 515 NARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSV----------------D----ENQLT--LEDA------ 566 (861)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTS----------------C----GGGCC--HHHH------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----------------H----hhhhh--hhHH------
Confidence 788888999999999999999999999999888776421100 0 00000 0000
Q ss_pred cCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHH
Q 000194 783 NGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSL 862 (1880)
Q Consensus 783 ~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~L 862 (1880)
.....++..+..+++.+..-.+ ..-..|...+++.+
T Consensus 567 --~~~~~l~~~~~~~l~~~~~~~~------------------------------------------~~~~~~~~~l~~~l 602 (861)
T d2bpta1 567 --QSLQELQSNILTVLAAVIRKSP------------------------------------------SSVEPVADMLMGLF 602 (861)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHCG------------------------------------------GGTGGGHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHhcch------------------------------------------hhHHHHHHHHHHHH
Confidence 0011223333333333210000 00011346778888
Q ss_pred HHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHH
Q 000194 863 MRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELF 942 (1880)
Q Consensus 863 l~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~ 942 (1880)
++.+.+.+....+..++.++..++..+|..+.||++.++|.++..+++.++.++..++..++.++...+..+.||+++++
T Consensus 603 ~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~ 682 (861)
T d2bpta1 603 FRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMM 682 (861)
T ss_dssp HHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHH
T ss_pred hhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHH
Confidence 88887766566677889999999999999999999999999999999988889999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchh-------hHHHHHHHH
Q 000194 943 SLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYT-------YVLDILHTL 1015 (1880)
Q Consensus 943 ~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~-------~~~~il~~l 1015 (1880)
+.+.+.|.....+. .....++.+++.++..+|+.|.||++.++|.+.+.+.......+.. ....++.++
T Consensus 683 ~~L~~~l~~~~~~~----~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 758 (861)
T d2bpta1 683 NVLAQMISNPNARR----ELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAY 758 (861)
T ss_dssp HHHHHHHHCTTCCT----THHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHH
Confidence 99999997654221 1223689999999999999999999999999999886422111111 112334443
Q ss_pred HHH-------hcchhhhhhhhHHHHHHhhcCC---CcHHHHHHHHHHHHhhcccc---cccchh-HhHHHH-HHHhhCCC
Q 000194 1016 EVF-------GGTLDEHMHLLLPALIRLFKVD---APVDIRRAAIETLTRLIPRV---QVTGHI-SSLVHH-LKLVLDGK 1080 (1880)
Q Consensus 1016 ~~~-------g~~~~~~~~~ilp~l~~~l~~~---~~~~vr~~ai~~l~~l~~~~---~~~~~~-~~ii~~-l~~~l~~~ 1080 (1880)
..+ +..+.+|+..+++.+..++... ...++++.++.++|+++... .+.++. ...+.. +.+...+.
T Consensus 759 ~~i~~~~~~~~~~~~p~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 838 (861)
T d2bpta1 759 VGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQ 838 (861)
T ss_dssp HHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHCcchhHHHHHhhHHHHHHHHHHHhCc
Confidence 322 2234566666666666666432 46788999999999987642 223322 233333 33444433
Q ss_pred --CHHHHHHHHHHHHHHHHHhc
Q 000194 1081 --NDELRKDAVDALCCLAHALG 1100 (1880)
Q Consensus 1081 --~~~l~~~al~~L~~l~~~~g 1100 (1880)
+...|..|-.+.-.+-.++|
T Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~ 860 (861)
T d2bpta1 839 LFSQATKDTARWAREQQKRQLS 860 (861)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHHhC
Confidence 45678877777666666554
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=7.7e-20 Score=251.03 Aligned_cols=749 Identities=13% Similarity=0.163 Sum_probs=461.8
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcC-CCcchhHHHHHHHHHHHHhhcC---
Q 000194 110 KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRG-DRVEYRRFAAVLILKEMAENAS--- 185 (1880)
Q Consensus 110 ~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~-~~~~~~R~aA~~~l~~la~~~p--- 185 (1880)
.+...|...+- ++|.++++.|.+.|..+... ..++|+ ..+++.+.+ ..+...|+.|...|+.......
T Consensus 5 ~~~~~L~~~~~-s~d~~~r~~Ae~~L~~~~~~---~~~~~~----~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~ 76 (861)
T d2bpta1 5 EFAQLLENSIL-SPDQNIRLTSETQLKKLSND---NFLQFA----GLSSQVLIDENTKLEGRILAALTLKNELVSKDSVK 76 (861)
T ss_dssp HHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHH---CHHHHH----HHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHH
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhc---CchHHH----HHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchh
Confidence 56777877652 56999999999999988764 123443 344455543 3445678877777765432211
Q ss_pred ---------ccchh-chHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChh
Q 000194 186 ---------TVFNV-HVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVH 255 (1880)
Q Consensus 186 ---------~~l~~-~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~ 255 (1880)
..+.+ ....+...++.++.++++.||..++.+++.+...-- + ..+| +.+++.+...+.++++..
T Consensus 77 ~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~---p--~~~w-peli~~L~~~~~s~~~~~ 150 (861)
T d2bpta1 77 TQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIEL---P--HGAW-PELMKIMVDNTGAEQPEN 150 (861)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG---G--GTCC-HHHHHHHHHHTSTTSCHH
T ss_pred hhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhC---C--cCch-HHHHHHHHHHhcCCCcHH
Confidence 11222 233456778899999999999999999887764311 1 1122 456777777777665567
Q ss_pred HHHHHHHHHHHHHHcchhh---hHHHHHHHHHHHHHHh--hcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHH
Q 000194 256 SIHGSLLAVGELLRNTGEF---MMSRYREVAEIVLRYL--EHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILT 330 (1880)
Q Consensus 256 ~~~~al~~l~~ll~~~~~~---~~~~~~~i~~~ll~~~--~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~ 330 (1880)
.+++++.+|+.+.+..+.. +.+.+.+++..++... .+.+..||..++.+
T Consensus 151 ~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~-------------------------- 204 (861)
T d2bpta1 151 VKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNA-------------------------- 204 (861)
T ss_dssp HHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHH--------------------------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH--------------------------
Confidence 8899999999887744322 2233333443333332 12334445444444
Q ss_pred hhcCCCCcchHHHHHHHHHhhchhhhh--hhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 000194 331 VLRIPAERDSGFIALGEMAGALDGELF--HYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIM 408 (1880)
Q Consensus 331 ~L~~~~~r~~a~~alg~la~~v~~~~~--p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l 408 (1880)
++.+....+..+. ...+.+++.+.+.+.+.+.+.+..++.|+..++..+++.+.||+..++..+
T Consensus 205 --------------l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l 270 (861)
T d2bpta1 205 --------------LADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYAL 270 (861)
T ss_dssp --------------HHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHH
T ss_pred --------------HHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333222 223445555666665443333457899999999999988999998776554
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHh
Q 000194 409 FSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQT 488 (1880)
Q Consensus 409 ~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~ 488 (1880)
...... ..++.....|++.
T Consensus 271 ~~~~~~-------------------------------------------------------------~~~~~v~~~~~~~ 289 (861)
T d2bpta1 271 TIATMK-------------------------------------------------------------SPNDKVASMTVEF 289 (861)
T ss_dssp HHHHTT-------------------------------------------------------------CSSHHHHHHHHHH
T ss_pred HHHHhc-------------------------------------------------------------CccHHHHHHHHHH
Confidence 321100 0011122223333
Q ss_pred hcccccCCCcchhhHHHHH--hhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHH
Q 000194 489 LARFNFKGHDLLEFARDSV--VLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLL 566 (1880)
Q Consensus 489 L~~~~~~~~~l~~~v~~~~--~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll 566 (1880)
+.++.... ..+..... ......... .....+..+++.++
T Consensus 290 l~~l~~~~---~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~l~~i~~~l~ 330 (861)
T d2bpta1 290 WSTICEEE---IDIAYELAQFPQSPLQSYN------------------------------------FALSSIKDVVPNLL 330 (861)
T ss_dssp HHHHHHHH---HHHHHHHHHCTTCSCCCCC------------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHhhhhhHHHHHH------------------------------------HHHHHHHHHHHHHH
Confidence 32220000 00000000 000000000 12233344444444
Q ss_pred HHHhc------CCChhHHHHHHHhccCC-CCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccc-ccHHH
Q 000194 567 IAAVA------DADVTVRHSIFSSLYGN-RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY-VLPAL 638 (1880)
Q Consensus 567 ~~~~~------d~~~~vR~~~l~~l~~~-~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~-v~p~l 638 (1880)
..... |.+..+|..+...+... ..+... ..+...+.+.....+++...|.+++..++.++...... ..|++
T Consensus 331 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l 409 (861)
T d2bpta1 331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV 409 (861)
T ss_dssp HHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHHHhhcchh-hhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHH
Confidence 33221 22345565555544210 000000 01234555666778889999999999999998866433 34555
Q ss_pred HHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccc--cCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHH
Q 000194 639 RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLI--RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLA 716 (1880)
Q Consensus 639 ~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~--~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La 716 (1880)
.+++..++..+ .+ +++..|..++++++.+++..+..+ ..+++.++..+.....+ ++.+...++.++..+.
T Consensus 410 ~~~l~~l~~~l-~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~------~~~~~~~~~~~~~~l~ 481 (861)
T d2bpta1 410 HQALPSILNLM-ND-QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD------HPKVATNCSWTIINLV 481 (861)
T ss_dssp HHHHHHHHHGG-GC-SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cC-cchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhcccc------ChHHHHHHHHHHHHHH
Confidence 55444444444 34 578999999999999998876554 34688888888877764 5667776676766666
Q ss_pred HhcC----CchhhhHHhHHHHHHHHHhc-CCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHH
Q 000194 717 RVGG----FGMRQYISELMPLIVEALLD-GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTR 791 (1880)
Q Consensus 717 ~~~g----~~~~~~~~~l~p~l~~~l~d-~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr 791 (1880)
.... ..+.++...++..++..... ..+...|..+..+++.++...+..+.|+. +.+++.+...+..
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~--~~l~~~~~~~l~~------- 552 (861)
T d2bpta1 482 EQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS--ASISTFVMDKLGQ------- 552 (861)
T ss_dssp HHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHH--HHHHHHHHHHHHH-------
T ss_pred HHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHH-------
Confidence 5443 34667777777777776653 23456788999999999988776554432 2233333222210
Q ss_pred HHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCCh
Q 000194 792 REVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSL 871 (1880)
Q Consensus 792 ~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~ 871 (1880)
.+....+. . ........
T Consensus 553 --------~~~~~~~~-------------------------------~---------------~~~~~~~~--------- 569 (861)
T d2bpta1 553 --------TMSVDENQ-------------------------------L---------------TLEDAQSL--------- 569 (861)
T ss_dssp --------HTTSCGGG-------------------------------C---------------CHHHHHHH---------
T ss_pred --------HHHHHhhh-------------------------------h---------------hhhHHhHH---------
Confidence 00000000 0 00000000
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCc-chhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhc
Q 000194 872 ASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDD-YLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWS 950 (1880)
Q Consensus 872 ~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~-~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~ 950 (1880)
......+..++..++...+..+.||.+.+++.++..+...++ ..++.++..++.++..+++.+.||++.+++.+...+.
T Consensus 570 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~ 649 (861)
T d2bpta1 570 QELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALN 649 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhC
Confidence 111234566677788888888899999999999999877654 5789999999999999999999999999999999887
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHH----HHhcchhhhh
Q 000194 951 SFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLE----VFGGTLDEHM 1026 (1880)
Q Consensus 951 ~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~----~~g~~~~~~~ 1026 (1880)
..+. .++ ..++.+++.++..+++++.||++.+++.+++.+++.+. +...+..++.++. .+|..+.+|+
T Consensus 650 ~~~~-----~v~-~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~--~~~~k~~~~~~l~~i~~~~~~~~~~~l 721 (861)
T d2bpta1 650 QVDS-----PVS-ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNA--RRELKPAVLSVFGDIASNIGADFIPYL 721 (861)
T ss_dssp CTTS-----HHH-HHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTC--CTTHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred CCCH-----HHH-HHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6541 122 36788999999999999999999999999999976432 2333333444433 4678888999
Q ss_pred hhhHHHHHHhhcCC---C-------cHHHHHHHHHHHHhhccc-----ccccchhHhHHHHHHHhhCCC----CHHHHHH
Q 000194 1027 HLLLPALIRLFKVD---A-------PVDIRRAAIETLTRLIPR-----VQVTGHISSLVHHLKLVLDGK----NDELRKD 1087 (1880)
Q Consensus 1027 ~~ilp~l~~~l~~~---~-------~~~vr~~ai~~l~~l~~~-----~~~~~~~~~ii~~l~~~l~~~----~~~l~~~ 1087 (1880)
..++|.+...+... . ..++|+.++.++..+... ..+.||++.|++.+..++.+. +.+++..
T Consensus 722 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i~~~i~~~~~~~~~~~~~~~~~~ 801 (861)
T d2bpta1 722 NDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRA 801 (861)
T ss_dssp HHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHH
T ss_pred HHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHHH
Confidence 99999888877532 1 245899999998887653 236789999998887777653 4678899
Q ss_pred HHHHHHHHHHHhcc
Q 000194 1088 AVDALCCLAHALGE 1101 (1880)
Q Consensus 1088 al~~L~~l~~~~g~ 1101 (1880)
++.+++.++..+|.
T Consensus 802 ~~~~i~~l~~~~~~ 815 (861)
T d2bpta1 802 AVGLIGDIAAMFPD 815 (861)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCcc
Confidence 99999999999885
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.9e-18 Score=234.47 Aligned_cols=788 Identities=15% Similarity=0.145 Sum_probs=464.1
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhc-CCChhhhhhHHHHHhHhhccccCc-
Q 000194 26 LNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLE-SNDAAENLGALRAIDELIDVALGE- 103 (1880)
Q Consensus 26 ~~~l~~~l~s~~~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~-s~~~~~r~~~i~ai~~Li~~~~~~- 103 (1880)
+.+++++.-|++.+.+++|+ ..+.++..++...|+..|.+. +.+ +.+.+.|..|...+...+......
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae-------~~L~~~~~~~~~~f~~~L~~i---~~~~~~~~~iR~~A~i~lKn~i~~~~~~~ 72 (876)
T d1qgra_ 3 LITILEKTVSPDRLELEAAQ-------KFLERAAVENLPTFLVELSRV---LANPGNSQVARVAAGLQIKNSLTSKDPDI 72 (876)
T ss_dssp HHHHHHGGGCSCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---HHCTTSCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred HHHHHHHHhCcCHHHHHHHH-------HHHHHHHhcChhHHHHHHHHH---HhcCCCCHHHHHHHHHHHHHHhhccccch
Confidence 45778888888656655432 234444444455555444432 223 234555666555555544321000
Q ss_pred -----------chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhh--CCCCchhHHHHHHHHHHhhhcCCCcchhH
Q 000194 104 -----------NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA--GGAMTADEVEFQVKMALDWLRGDRVEYRR 170 (1880)
Q Consensus 104 -----------~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~--~g~~~~~~v~~~~~~~~~~l~~~~~~~~R 170 (1880)
....-..+-+.+..++. + +..+++.++.+++.++.. +...|+++++.++..+.. .+..+..|
T Consensus 73 ~~~~~~~~~~i~~~~k~~ik~~ll~~l~-~-~~~~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~---~~~~~~~~ 147 (876)
T d1qgra_ 73 KAQYQQRWLAIDANARREVKNYVLHTLG-T-ETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTN---PNSTEHMK 147 (876)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHTT-T-CCSSSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHC---TTCCHHHH
T ss_pred hhhhhcccccCCHHHHHHHHHHHHHHhc-C-CcHHHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcC---CCCcHHHH
Confidence 00111122234445553 3 335667789999999875 334688887666554421 34556789
Q ss_pred HHHHHHHHHHHhhc-CccchhchHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhh
Q 000194 171 FAAVLILKEMAENA-STVFNVHVAEFVDAIWVALR--DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDG 247 (1880)
Q Consensus 171 ~aA~~~l~~la~~~-p~~l~~~l~~i~~~i~~~l~--D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~ 247 (1880)
.+|+.++..+++.. +..+.++++.+++.+...+. |++..+|.+|..++..+...+.... ........+++.+...
T Consensus 148 ~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~--~~~~~~~~i~~~l~~~ 225 (876)
T d1qgra_ 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF--DKESERHFIMQVVCEA 225 (876)
T ss_dssp HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH--TSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHH
Confidence 99999999999875 46788999999999999996 4557899999999887765543211 1112223344445555
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHH-HHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHH
Q 000194 248 LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVA-EIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMN 326 (1880)
Q Consensus 248 l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~-~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~ 326 (1880)
+.++ +++++..++.++..+.....+++.+++.+.+ ..+.....+.++.++..++..+..++...... ......
T Consensus 226 ~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~ 299 (876)
T d1qgra_ 226 TQCP-DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDL-----AIEASE 299 (876)
T ss_dssp TTCS-SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
T ss_pred hcCC-CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH-----HHHhhH
Confidence 5555 4788899999999999988888888876643 34455566777888888887777665421111 111111
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCC-------CCchHHHHHHHHHHHhCCCchH
Q 000194 327 HILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGK-------PSLEALACVGNIARAMGPVMEP 399 (1880)
Q Consensus 327 ~Ll~~L~~~~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~-------~~~~a~~~l~~la~~~g~~~~~ 399 (1880)
...... ....... . ....+++.+++.+.+.+...... .+..+..|+..++...|..+.
T Consensus 300 ~~~~~~-~~~~~~~----------~---~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~- 364 (876)
T d1qgra_ 300 AAEQGR-PPEHTSK----------F---YAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV- 364 (876)
T ss_dssp HHHHSS-CCSSCCC----------C---HHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGH-
T ss_pred HHHhhh-hHHHHHH----------H---HHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhh-
Confidence 111111 1111000 0 01133444555555544322111 011233344333333332211
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCc
Q 000194 400 HVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGS 479 (1880)
Q Consensus 400 ~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1880)
T Consensus 365 -------------------------------------------------------------------------------- 364 (876)
T d1qgra_ 365 -------------------------------------------------------------------------------- 364 (876)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHH
Q 000194 480 APVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIE 559 (1880)
Q Consensus 480 ~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (1880)
+.+.+.+...+.++++.+|.++...++.+... + ....+.
T Consensus 365 ---------------------~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~----~----------------~~~~~~ 403 (876)
T d1qgra_ 365 ---------------------PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG----P----------------EPSQLK 403 (876)
T ss_dssp ---------------------HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS----S----------------CHHHHH
T ss_pred ---------------------hhhHHHHHHhhccchHHHHHHHHHHHHhhhhh----h----------------hHHHHH
Confidence 12222222334555677777666554433210 0 001111
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccccc--HH
Q 000194 560 ELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVL--PA 637 (1880)
Q Consensus 560 ~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~--p~ 637 (1880)
..+ ..+++.+...++|+++.||..+..+++++++..|..+. .+
T Consensus 404 ~~~-----------------------------------~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (876)
T d1qgra_ 404 PLV-----------------------------------IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (876)
T ss_dssp HHH-----------------------------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred HHH-----------------------------------HHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHH
Confidence 111 13455666778899999999999999999987765432 22
Q ss_pred HHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhC--------------cccccCchHHHHHHHHHHhccCCCCCCChh
Q 000194 638 LRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNC--------------ERLIRPYIAPIHKALVARLLEGTGINANNG 703 (1880)
Q Consensus 638 l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~--------------~~~~~py~~~il~~ll~~l~~~~~~~~~~~ 703 (1880)
+...+..++..+ . ..++.+..++..+..+.+.. ...+.+|++.++..++..+.+... ....
T Consensus 449 ~~~~~~~l~~~l-~--~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~--~~~~ 523 (876)
T d1qgra_ 449 LAPLLQCLIEGL-S--AEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG--HQNN 523 (876)
T ss_dssp HHHHHHHHHHHT-T--SCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS--CSTT
T ss_pred hhhHHHHHHHHh-c--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcc--ccHh
Confidence 344333333333 2 35778888999988887532 245778999999999998876421 3566
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhc
Q 000194 704 IISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLN 783 (1880)
Q Consensus 704 v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~ 783 (1880)
++..++.++..+.........+++..+++.+++.+... ....... ..... +.-..
T Consensus 524 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------------l~~~~~~-~~~~~-~~~~~------- 578 (876)
T d1qgra_ 524 LRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQV----------------LQMESHI-QSTSD-RIQFN------- 578 (876)
T ss_dssp HHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHH----------------HTTTTSC-CSTTH-HHHHH-------
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH----------------HHHhhhh-cchhh-hHHHH-------
Confidence 77888888888888888888888888888777665411 0000000 00000 00000
Q ss_pred CCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHH
Q 000194 784 GELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLM 863 (1880)
Q Consensus 784 ~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll 863 (1880)
.++.....+++.+.. .. . ......+.+.++..++
T Consensus 579 -----~~~~~l~~~l~~~~~---~~---------------------~-----------------~~~~~~~~~~i~~~l~ 612 (876)
T d1qgra_ 579 -----DLQSLLCATLQNVLR---KV---------------------Q-----------------HQDALQISDVVMASLL 612 (876)
T ss_dssp -----HHHHHHHHHHHHHHT---TS---------------------C-----------------HHHHHTTHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHH---Hc---------------------c-----------------hhhhhhhHHHHHHHHH
Confidence 011111111111110 00 0 0000113456777888
Q ss_pred HHhcCC-ChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCC-cchhHHHHHHHHHHHHHHHHhHHHhHHHH
Q 000194 864 RILRDP-SLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCD-DYLKDYITWKLGTLVSIVRQHIRKYLQEL 941 (1880)
Q Consensus 864 ~~L~d~-s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~-~~~~~~~~~~l~~lv~~~~~~i~~y~~~i 941 (1880)
+++... .....+..+..++..++...|..+.||++.++|.++..+++.. +..+..++..++.+....+.++.||++.+
T Consensus 613 ~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i 692 (876)
T d1qgra_ 613 RMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEV 692 (876)
T ss_dssp HHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHH
Confidence 877542 2234567888999999999999999999999999999998765 45888888999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcc
Q 000194 942 FSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGT 1021 (1880)
Q Consensus 942 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~ 1021 (1880)
++.+.+.|+...... . ....++.+++.++..+|++|.+|++.++|.+...+.......+.. .. ..+.
T Consensus 693 ~~~l~~~l~~~~~~~---~-~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~~~-~~---~~~~----- 759 (876)
T d1qgra_ 693 MQLLLENLGNENVHR---S-VKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYD-MV---DYLN----- 759 (876)
T ss_dssp HHHHHHHHTCTTSCG---G-GHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHH-HH---HHHH-----
T ss_pred HHHHHHHhCCccCCH---H-HHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccCccchh-HH---HHHH-----
Confidence 999999997654221 1 224789999999999999999999999999998876321111111 11 1111
Q ss_pred hhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcc------------cccccchhHhHHHHHHHhhCC--CCHHHHHH
Q 000194 1022 LDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIP------------RVQVTGHISSLVHHLKLVLDG--KNDELRKD 1087 (1880)
Q Consensus 1022 ~~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~------------~~~~~~~~~~ii~~l~~~l~~--~~~~l~~~ 1087 (1880)
.+|..++++++.+.. ...+.+++..|+..+..+..+ .+.+++..
T Consensus 760 ----------------------~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~ 817 (876)
T d1qgra_ 760 ----------------------ELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVAC 817 (876)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 111112222211111 012456666666555444433 35789999
Q ss_pred HHHHHHHHHHHhccccccch---hHHHHHHHhCC
Q 000194 1088 AVDALCCLAHALGEDFTIFI---PSIHKLLLKHR 1118 (1880)
Q Consensus 1088 al~~L~~l~~~~g~~f~~fi---p~i~~~l~~~~ 1118 (1880)
++.+|+.++..+|.+...++ |.|.+.+.+..
T Consensus 818 ~~~~i~~l~~~~g~~~~~~~~~~~~v~~ll~~~~ 851 (876)
T d1qgra_ 818 AAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGR 851 (876)
T ss_dssp HHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 99999999999998876554 66776666543
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.5e-19 Score=236.43 Aligned_cols=576 Identities=13% Similarity=0.063 Sum_probs=370.6
Q ss_pred CCCCHHHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhh
Q 000194 19 GGGSLDALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELI 97 (1880)
Q Consensus 19 ~~~~~~~~~~l~~~l~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li 97 (1880)
+..+...+..++.+|++.+...| .|++.|..+.. .+.++.- .+++.+.+.++++..+ ..+.+.+-.+..++
T Consensus 5 ~~~~~~~i~~l~~~l~~~~~~~R~~a~~~l~~ia~----~lg~~~~---~~~lip~l~~~~~~~~-ev~~~~~~~l~~~~ 76 (588)
T d1b3ua_ 5 GDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIAL----ALGVERT---RSELLPFLTDTIYDED-EVLLALAEQLGTFT 76 (588)
T ss_dssp TTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHH----HSCHHHH---HHTHHHHHHHTCCCCH-HHHHHHHHHHTTCS
T ss_pred cCcchhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH----HhCcHhh---HHHHHHHHHHHhcCcH-HHHHHHHHHHHHHH
Confidence 45556678899999999865544 48888776653 3344322 2446666677776544 34555555666555
Q ss_pred ccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHH
Q 000194 98 DVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLIL 177 (1880)
Q Consensus 98 ~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l 177 (1880)
..-++ +..+..+.+.+..++. .+|..|+..|+++++.++.. ...+.+...+...+..|.++.....|.+|+.++
T Consensus 77 ~~~~~--~~~~~~ll~~l~~l~~-~~~~~Vr~~a~~~l~~i~~~---~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll 150 (588)
T d1b3ua_ 77 TLVGG--PEYVHCLLPPLESLAT-VEETVVRDKAVESLRAISHE---HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLF 150 (588)
T ss_dssp GGGTS--GGGGGGGHHHHHHHTT-SSCHHHHHHHHHHHHHHHTT---SCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGH
T ss_pred HHcCC--hhHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 54322 2234445666667664 66889999999999999875 233444444444555555556667888888888
Q ss_pred HHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHH
Q 000194 178 KEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSI 257 (1880)
Q Consensus 178 ~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 257 (1880)
..++...+.. ....+++.+...+.|+++.||.+|+.+++.+...+... .....+++.+...+.++ ++.+|
T Consensus 151 ~~~~~~~~~~---~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~------~~~~~l~~~l~~l~~d~-~~~vr 220 (588)
T d1b3ua_ 151 SVCYPRVSSA---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD------NVKSEIIPMFSNLASDE-QDSVR 220 (588)
T ss_dssp HHHTTTSCHH---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH------HHHHTHHHHHHHHHTCS-CHHHH
T ss_pred HHHHHHhhHH---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHH------HHHHHHHHHHHHHhcCC-chhhH
Confidence 8887665543 44567777888889999999999999999887654421 11234555555555565 47889
Q ss_pred HHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC-
Q 000194 258 HGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA- 336 (1880)
Q Consensus 258 ~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~- 336 (1880)
.+++.++..+....++. .+...+.+.+....++++..||..++.+++.++...+.+. ....+++.+...+.++.
T Consensus 221 ~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~ll~d~~~ 295 (588)
T d1b3ua_ 221 LLAVEACVNIAQLLPQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI---TKTDLVPAFQNLMKDCEA 295 (588)
T ss_dssp TTHHHHHHHHHHHSCHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH---HHHTHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHhhccCCHH--HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhh---hhhhhhHHHHHHHhccch
Confidence 99999999888754321 2233456666667789999999999999999987554433 23567888888887654
Q ss_pred -CcchHHHHHHHHHhhchhhh--hhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCC
Q 000194 337 -ERDSGFIALGEMAGALDGEL--FHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGL 413 (1880)
Q Consensus 337 -~r~~a~~alg~la~~v~~~~--~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~l 413 (1880)
.|..|+.+++.++..++... .++++.+++.+...+.+....++..+..+++.++..+|.. .+.+.
T Consensus 296 ~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~--~~~~~---------- 363 (588)
T d1b3ua_ 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD--NTIEH---------- 363 (588)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH--HHHHH----------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchh--HHHHH----------
Confidence 48899999999998887642 2456667777776665443222223333333333322210 01111
Q ss_pred CHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccc
Q 000194 414 STTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFN 493 (1880)
Q Consensus 414 s~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~ 493 (1880)
T Consensus 364 -------------------------------------------------------------------------------- 363 (588)
T d1b3ua_ 364 -------------------------------------------------------------------------------- 363 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCC
Q 000194 494 FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADA 573 (1880)
Q Consensus 494 ~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~ 573 (1880)
+...+..++.+++++||..++.++..+..... .......+++.+.. ...|+
T Consensus 364 ---------l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~-------------------~~~~~~~ll~~l~~-~~~d~ 414 (588)
T d1b3ua_ 364 ---------LLPLFLAQLKDECPEVRLNIISNLDCVNEVIG-------------------IRQLSQSLLPAIVE-LAEDA 414 (588)
T ss_dssp ---------THHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC-------------------HHHHHHHHHHHHHH-HHTCS
T ss_pred ---------HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcc-------------------hhhhhhHHHHHHHH-HHhcc
Confidence 11122233445566666665554443332110 11223444444443 35778
Q ss_pred ChhHHHHHHHhccC-CCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcC
Q 000194 574 DVTVRHSIFSSLYG-NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQS 652 (1880)
Q Consensus 574 ~~~vR~~~l~~l~~-~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~ 652 (1880)
++.+|..+++.+.. ...+...-..+.+.+.++.++.|+...||.+|...++.++...+.. ...+.+.+.+..+..+
T Consensus 415 ~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~---~~~~~i~~~l~~~~~~ 491 (588)
T d1b3ua_ 415 KWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGD 491 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTC
T ss_pred cHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcH---HHHHHHHHHHHHHhcC
Confidence 88888887777631 0001111112346778888999999999999999999998765321 1234445555555555
Q ss_pred CCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHH
Q 000194 653 SADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMP 732 (1880)
Q Consensus 653 ~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p 732 (1880)
++...|..++.+++.+++.++.. .+.+.+++.+++.+.|+ .++|+.+++.+++.+....+. ..+...+.|
T Consensus 492 -~~~~~R~~~~~~l~~l~~~~~~~--~~~~~ilp~ll~~~~D~-----v~nVR~~a~~~l~~i~~~~~~--~~~~~~i~~ 561 (588)
T d1b3ua_ 492 -PNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDP-----VANVRFNVAKSLQKIGPILDN--STLQSEVKP 561 (588)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCS-----CHHHHHHHHHHHHHHGGGSCH--HHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHHHcCc--HhHHHHHHH
Confidence 67888999999999998876532 23456788888888875 789999999999998776654 234456677
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHH
Q 000194 733 LIVEALLDGAAVTKREVAVSTLGQVV 758 (1880)
Q Consensus 733 ~l~~~l~d~~~~~~r~~Al~~Lg~l~ 758 (1880)
.+...+.|. +.++|..|..+|..++
T Consensus 562 ~l~~L~~D~-d~dVr~~A~~al~~l~ 586 (588)
T d1b3ua_ 562 ILEKLTQDQ-DVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHTTCS-SHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHHh
Confidence 776666665 7889999999998764
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2.7e-18 Score=224.46 Aligned_cols=494 Identities=13% Similarity=0.109 Sum_probs=333.2
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHh
Q 000194 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSS 584 (1880)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1880)
..+..++.+++..||.+|+.++..+..... ...+...+..++.....++....|.++...
T Consensus 90 ~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~--------------------~~~~~~~l~p~i~~L~~~~~~~~r~~a~~l 149 (588)
T d1b3ua_ 90 PPLESLATVEETVVRDKAVESLRAISHEHS--------------------PSDLEAHFVPLVKRLAGGDWFTSRTSACGL 149 (588)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTTSC--------------------HHHHHHTHHHHHHHHHTCSSHHHHHHHGGG
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 344456778889999999998888764221 111222233344444456666778877665
Q ss_pred ccCC-CCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHH
Q 000194 585 LYGN-RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESA 663 (1880)
Q Consensus 585 l~~~-~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~ 663 (1880)
+... ..+.+. ...++++.+...++|+++.||+.+...++.+++..+. +.....+...+..+..+ ++..+|..|+
T Consensus 150 l~~~~~~~~~~-~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d-~~~~vr~~a~ 224 (588)
T d1b3ua_ 150 FSVCYPRVSSA-VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASD-EQDSVRLLAV 224 (588)
T ss_dssp HHHHTTTSCHH-HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTC-SCHHHHTTHH
T ss_pred HHHHHHHhhHH-HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHhcC-CchhhHHHHH
Confidence 5311 112221 1245677778889999999999999999999987653 23334455556666566 7888999999
Q ss_pred HHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCc
Q 000194 664 KLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAA 743 (1880)
Q Consensus 664 ~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~ 743 (1880)
.+++.++...+.. .+...+++.+...+.++ +..|+..++.+++.++...+... ....++|.+...+.|. +
T Consensus 225 ~~l~~i~~~~~~~--~~~~~i~~~l~~~~~D~-----~~~Vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll~d~-~ 294 (588)
T d1b3ua_ 225 EACVNIAQLLPQE--DLEALVMPTLRQAAEDK-----SWRVRYMVADKFTELQKAVGPEI--TKTDLVPAFQNLMKDC-E 294 (588)
T ss_dssp HHHHHHHHHSCHH--HHHHHTHHHHHHHHTCS-----SHHHHHHHHHTHHHHHHHHCHHH--HHHTHHHHHHHHHTCS-S
T ss_pred HHHHHhhccCCHH--HHHHHHHHHHHHhcccc-----cHHHHHHHHHhHHHHHHHhhhhh--hhhhhhHHHHHHHhcc-c
Confidence 9999999876532 23344566666666664 78899999999999988766543 3357899999999987 5
Q ss_pred hhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCccccc
Q 000194 744 VTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVT 823 (1880)
Q Consensus 744 ~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~ 823 (1880)
.++|..|+.+++.++...+....+-...+.+++.+...+++ .++.+|..+..+++.+.. ..
T Consensus 295 ~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d-~~~~vr~~~~~~l~~~~~---~~--------------- 355 (588)
T d1b3ua_ 295 AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD-ANQHVKSALASVIMGLSP---IL--------------- 355 (588)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTC-SCHHHHHHHHTTGGGGHH---HH---------------
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcC-CChHHHHHHHHHHhhhhh---cc---------------
Confidence 78999999999999988765422211235677777777754 478999887666554431 00
Q ss_pred ccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHH
Q 000194 824 RAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPD 903 (1880)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ 903 (1880)
..+.+...+++.+...++|++. +....++.++..+....|.. ...+.++|.
T Consensus 356 --------------------------~~~~~~~~l~p~l~~~l~d~~~-~v~~~~~~~l~~~~~~~~~~--~~~~~ll~~ 406 (588)
T d1b3ua_ 356 --------------------------GKDNTIEHLLPLFLAQLKDECP-EVRLNIISNLDCVNEVIGIR--QLSQSLLPA 406 (588)
T ss_dssp --------------------------CHHHHHHHTHHHHHHHHTCSCH-HHHHHHHTTCHHHHHHSCHH--HHHHHHHHH
T ss_pred --------------------------chhHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHhhcchh--hhhhHHHHH
Confidence 0001123455677777888764 34556777777777766542 345788999
Q ss_pred HHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhc
Q 000194 904 LFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRT 983 (1880)
Q Consensus 904 ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~ 983 (1880)
+...+++.+...|..++..++.++...+..+ +.+.+.+.+...+.... ..++. .++.+++.++..++.++
T Consensus 407 l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~D~~-----~~VR~-~A~~~L~~l~~~~~~~~-- 476 (588)
T d1b3ua_ 407 IVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHV-----YAIRE-AATSNLKKLVEKFGKEW-- 476 (588)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSS-----HHHHH-HHHHHHHHHHHHHCHHH--
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHcChHh--HHHHHHHHHHhhccCCc-----hhHHH-HHHHHHHHHHHHhCcHH--
Confidence 9998888888899999998888887665433 33444555555544332 12233 67778888888777664
Q ss_pred cchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcch--hhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccccc
Q 000194 984 HLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTL--DEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQ 1061 (1880)
Q Consensus 984 yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~--~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~~~ 1061 (1880)
..+.++|.+.+.+.+.+ ...|..+. .++..++..+ +.+...++|.+++++... ...||..++++++.+....+
T Consensus 477 ~~~~i~~~l~~~~~~~~-~~~R~~~~---~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~-v~nVR~~a~~~l~~i~~~~~ 551 (588)
T d1b3ua_ 477 AHATIIPKVLAMSGDPN-YLHRMTTL---FCINVLSEVCGQDITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPILD 551 (588)
T ss_dssp HHHHTHHHHHHTTTCSC-HHHHHHHH---HHHHHHHHHHHHHHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHH---HHHHHHHHHcChHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHcC
Confidence 34678888888876532 22233333 3444333322 234466899999988654 46899999999999988766
Q ss_pred ccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 000194 1062 VTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLA 1096 (1880)
Q Consensus 1062 ~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~ 1096 (1880)
-..+...+.+.+.+.+++++.++|..|-.+|..|+
T Consensus 552 ~~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l~ 586 (588)
T d1b3ua_ 552 NSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred cHhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 55566777777878888888999999999887764
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=9.6e-16 Score=210.20 Aligned_cols=626 Identities=12% Similarity=0.077 Sum_probs=398.5
Q ss_pred CCHHHHHHHHHHHcCCCC-c--hhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCC--ChhhhhhHHHHHhH
Q 000194 21 GSLDALNRILADLCTHGN-P--KEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESN--DAAENLGALRAIDE 95 (1880)
Q Consensus 21 ~~~~~~~~l~~~l~s~~~-~--~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~--~~~~r~~~i~ai~~ 95 (1880)
.-|+++..+++.+.+++. . ++++...|..++ .++.++.+..+.+.+...+...+.++ +...|.+++.++..
T Consensus 125 ~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~----~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~ 200 (876)
T d1qgra_ 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC----QDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLN 200 (876)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH----HHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH----HHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHH
Confidence 357899999999987753 2 234555555554 45677777788888888877777553 45678888888877
Q ss_pred hhccccCc--chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHH
Q 000194 96 LIDVALGE--NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAA 173 (1880)
Q Consensus 96 Li~~~~~~--~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA 173 (1880)
++...... ......-+.+.+...+. .+|.+++..+.+++..++.........++...+...+.....+..+..+..+
T Consensus 201 ~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 279 (876)
T d1qgra_ 201 SLEFTKANFDKESERHFIMQVVCEATQ-CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQG 279 (876)
T ss_dssp HGGGCHHHHTSHHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 76553111 11111223455555554 5688999999999999998743333333332222222211234455667777
Q ss_pred HHHHHHHHhhcC---------------------ccchhchHHHHHHHHHHhcC-------CchhHHHHHHHHHHHHHHHH
Q 000194 174 VLILKEMAENAS---------------------TVFNVHVAEFVDAIWVALRD-------PTLAVRERAVEALRACLRVI 225 (1880)
Q Consensus 174 ~~~l~~la~~~p---------------------~~l~~~l~~i~~~i~~~l~D-------~~~~VR~aA~~al~~~~~~i 225 (1880)
+.++..+++... ......++.+++.+...+.+ ....+|.+|..++..+....
T Consensus 280 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~ 359 (876)
T d1qgra_ 280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC 359 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHh
Confidence 888877765211 11224555666666665532 23468999999988877654
Q ss_pred hhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc-hhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 000194 226 EKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT-GEFMMSRYREVAEIVLRYLEHRDRLVRLSITSL 304 (1880)
Q Consensus 226 ~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~-~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~ 304 (1880)
.. ..+..+++.+...+.++ +|..+++++.+++.+.... .+.+.++...++..+...+.+.++.||.+++.+
T Consensus 360 ~~-------~~~~~~~~~i~~~l~~~-~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~ 431 (876)
T d1qgra_ 360 ED-------DIVPHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWT 431 (876)
T ss_dssp GG-------GGHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred hh-------hhhhhhHHHHHHhhccc-hHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHH
Confidence 31 23556677777777776 5999999999999888744 456788889999999999999999999999999
Q ss_pred hHhHhhhChhhHH-HHHHHHHHHHHHHhhcCCC-CcchHHHHHHHHHhhch--------------hhhhhhhhHHHHHHH
Q 000194 305 LPRIAHFLRDRFV-TNYLKICMNHILTVLRIPA-ERDSGFIALGEMAGALD--------------GELFHYLPTITSHLR 368 (1880)
Q Consensus 305 i~~la~~~~~~f~-~~yl~~~~~~Ll~~L~~~~-~r~~a~~alg~la~~v~--------------~~~~p~l~~i~~~l~ 368 (1880)
++.++.+.+..+. ..|++.+++.+...+.... .+..+..++..+..... ..+.+|++.++..+.
T Consensus 432 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~ 511 (876)
T d1qgra_ 432 VGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLL 511 (876)
T ss_dssp HHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHH
T ss_pred HHHHHHHcchhhhhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 9999987765432 2467888999888886532 35667777777665432 225678888888888
Q ss_pred HhhcCCCCC---CCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 000194 369 EAIAPRRGK---PSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISF 445 (1880)
Q Consensus 369 ~~l~~~~~~---~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~ 445 (1880)
..+...... ....++.++..+....+....|++..+++.++. .+..
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~l~~ 560 (876)
T d1qgra_ 512 ETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIME-------------------------------RLQQ 560 (876)
T ss_dssp HHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHH-------------------------------HHHH
T ss_pred HHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH-------------------------------HHHH
Confidence 887543322 124567777777777767777777766554331 1110
Q ss_pred HhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHH
Q 000194 446 VLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALC 525 (1880)
Q Consensus 446 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~ 525 (1880)
++...... ... +. . .... ..+.....+
T Consensus 561 ~l~~~~~~--------------------~~~-~~-~-------------------~~~~------------~~~~~l~~~ 587 (876)
T d1qgra_ 561 VLQMESHI--------------------QST-SD-R-------------------IQFN------------DLQSLLCAT 587 (876)
T ss_dssp HHTTTTSC--------------------CST-TH-H-------------------HHHH------------HHHHHHHHH
T ss_pred HHHHhhhh--------------------cch-hh-h-------------------HHHH------------HHHHHHHHH
Confidence 11000000 000 00 0 0000 000000000
Q ss_pred HHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHH
Q 000194 526 CCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIF 605 (1880)
Q Consensus 526 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~ 605 (1880)
+..++.... .+...+.. +.++..+.
T Consensus 588 l~~~~~~~~--------------------~~~~~~~~-----------------------------------~~i~~~l~ 612 (876)
T d1qgra_ 588 LQNVLRKVQ--------------------HQDALQIS-----------------------------------DVVMASLL 612 (876)
T ss_dssp HHHHHTTSC--------------------HHHHHTTH-----------------------------------HHHHHHHH
T ss_pred HHHHHHHcc--------------------hhhhhhhH-----------------------------------HHHHHHHH
Confidence 000110000 00000000 01222222
Q ss_pred HHhC--CCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHH
Q 000194 606 AALN--DEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAP 683 (1880)
Q Consensus 606 ~~l~--D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~ 683 (1880)
..+. +++..+++.++.+++.++...+..+.|++..++..++..+.+. .++..|..|+.+++.+++..+..+.||.+.
T Consensus 613 ~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 691 (876)
T d1qgra_ 613 RMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY-AEYQVCLAAVGLVGDLCRALQSNIIPFCDE 691 (876)
T ss_dssp HHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHhHHhhhhhHHH
Confidence 2222 3456788889999999988888888899888887777878776 667889999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCch----------hhHHHHHHH
Q 000194 684 IHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAV----------TKREVAVST 753 (1880)
Q Consensus 684 il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~----------~~r~~Al~~ 753 (1880)
+++.+++.+.++. .+..++..++.++|.++...|+.+.+|++.++|.+.+.++...+. +.|+.++.+
T Consensus 692 i~~~l~~~l~~~~---~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 768 (876)
T d1qgra_ 692 VMQLLLENLGNEN---VHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEA 768 (876)
T ss_dssp HHHHHHHHHTCTT---SCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcc---CCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHH
Confidence 9999999998752 356788999999999999999999999999999999988732211 246677777
Q ss_pred HHHHHhhcCc---cccc-C----CcchHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHc
Q 000194 754 LGQVVQSTGY---VITP-Y----NEYPQLLGLLLKMLN-GELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 754 Lg~l~~~~~~---~i~p-~----~~~p~ll~~Ll~~L~-~~~~~~vr~~~l~~lg~lg 802 (1880)
++.++..... ...+ . ..++.++..+..+.. .+.+..+++.++.++|.++
T Consensus 769 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~ 826 (876)
T d1qgra_ 769 YTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLC 826 (876)
T ss_dssp HHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 7766544321 1110 0 112344444433333 2347889999998888764
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.7e-09 Score=134.46 Aligned_cols=205 Identities=16% Similarity=0.193 Sum_probs=138.8
Q ss_pred HHHHHHhcCCChhHHHHHHHhccC-----CCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCC--------
Q 000194 564 KLLIAAVADADVTVRHSIFSSLYG-----NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKN-------- 630 (1880)
Q Consensus 564 ~Ll~~~~~d~~~~vR~~~l~~l~~-----~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~-------- 630 (1880)
..+.....++++++|..++++|.. ...|.+++. +.....+....++++.+++..|+..++.+++..
T Consensus 219 ~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~ 297 (458)
T d1ibrb_ 219 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS 297 (458)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344445788999999998887742 112233332 123445566778889999999999998876421
Q ss_pred --------cccc-----cHHHHHHHHHHHHHH-hc-----CCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHH
Q 000194 631 --------PAYV-----LPALRRHLIQLLTYL-EQ-----SSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVAR 691 (1880)
Q Consensus 631 --------p~~v-----~p~l~~~l~~~l~~l-~~-----~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~ 691 (1880)
+... ...+.. +...+... .+ .+.+...|..|..+++.++...++. .++.+++.+.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~~~l~~~i~~~ 373 (458)
T d1ibrb_ 298 EAAEQGRPPEHTSKFYAKGALQY-LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IVPHVLPFIKEH 373 (458)
T ss_dssp CTTCSSSCSSCCCCCHHHHHHHH-HHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---HHHHHHHHHHHH
T ss_pred hHHHhhhHHHHHHHHHHHHHHHH-HhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh---hhhHHHHHHHHH
Confidence 1111 112222 22222222 11 1123346778999999999888754 356677777777
Q ss_pred hccCCCCCCChhHHHHHHHHHHHHHHhc-CCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCc
Q 000194 692 LLEGTGINANNGIISGVLVTVGDLARVG-GFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNE 770 (1880)
Q Consensus 692 l~~~~~~~~~~~v~~~~~~~l~~La~~~-g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~ 770 (1880)
++++ ++.++.+++.++|.++... +..+.+|+++++|.+++.++|+ +..+|.+|+++||++++..+....+...
T Consensus 374 l~s~-----~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~-~~~VR~~a~~~l~~i~~~~~~~~~~~~~ 447 (458)
T d1ibrb_ 374 IKNP-----DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLPEAAINDVY 447 (458)
T ss_dssp TTCS-----SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHGGGGCCSTTT
T ss_pred hcCC-----CHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccchhhH
Confidence 7764 7889999999999998654 5678999999999999999987 5789999999999999988765433344
Q ss_pred chHHHHHHH
Q 000194 771 YPQLLGLLL 779 (1880)
Q Consensus 771 ~p~ll~~Ll 779 (1880)
+|.+++.|+
T Consensus 448 l~~ll~~ll 456 (458)
T d1ibrb_ 448 LAPLLQCLI 456 (458)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 566666654
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=9e-08 Score=131.09 Aligned_cols=690 Identities=11% Similarity=0.114 Sum_probs=361.6
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcC-CCcchhHHHHHHHHHHHHh-hcCc-----cchhc-hH
Q 000194 122 KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRG-DRVEYRRFAAVLILKEMAE-NAST-----VFNVH-VA 193 (1880)
Q Consensus 122 ~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~-~~~~~~R~aA~~~l~~la~-~~p~-----~l~~~-l~ 193 (1880)
+.+++.++.|-+-|..+-.. ++|...++. .+.+ +.+...|.+|...++.... ++.. .+.+. -.
T Consensus 14 s~~~~~~k~Ae~~L~~~~~~-----p~f~~~L~~----i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~ 84 (959)
T d1wa5c_ 14 SVIASTAKTSERNLRQLETQ-----DGFGLTLLH----VIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVE 84 (959)
T ss_dssp TTSGGGHHHHHHHHHHHHTS-----TTHHHHHHH----HHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHH
T ss_pred CCChHHHHHHHHHHHHHHcC-----CCHHHHHHH----HHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHH
Confidence 44677899999999887654 345444333 3333 3345678877777776554 3332 12222 23
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch-
Q 000194 194 EFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG- 272 (1880)
Q Consensus 194 ~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~- 272 (1880)
.|-..++.+|.+++..||...+.+++.++.. +. -.+| +.+++.+.+.+.+++ ...+++++.++..+.+...
T Consensus 85 ~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~----d~--p~~W-p~ll~~l~~~l~s~~-~~~~~~~L~~l~~i~k~~~~ 156 (959)
T d1wa5c_ 85 LIKKEIVPLMISLPNNLQVQIGEAISSIADS----DF--PDRW-PTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRP 156 (959)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH----HS--TTTC-TTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH----hC--cccc-HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHh
Confidence 3557788888899999999988888776542 11 1123 567888888888764 6789999999999986321
Q ss_pred ----h-----------hhHHHHHHHHHHHHHHhhcc--hhHHHH-------HHHHHhHhHhhhChhhHHHHHHHHHHHHH
Q 000194 273 ----E-----------FMMSRYREVAEIVLRYLEHR--DRLVRL-------SITSLLPRIAHFLRDRFVTNYLKICMNHI 328 (1880)
Q Consensus 273 ----~-----------~~~~~~~~i~~~ll~~~~~~--~~~Vr~-------~~~~~i~~la~~~~~~f~~~yl~~~~~~L 328 (1880)
+ .+.+.+.+++..+....... +...-. .++..+..+.......+....+...+..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (959)
T d1wa5c_ 157 LFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIF 236 (959)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHH
T ss_pred hhcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 1 11222223333332222211 111111 11222222222222334444566777777
Q ss_pred HHhhcCCC-----------------CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCC--Cc---hHHHHH
Q 000194 329 LTVLRIPA-----------------ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP--SL---EALACV 386 (1880)
Q Consensus 329 l~~L~~~~-----------------~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~--~~---~a~~~l 386 (1880)
...+.... .|...+..+..+....++.+.||++.+++.+.+.+....... .. .++.++
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l 316 (959)
T d1wa5c_ 237 HKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFL 316 (959)
T ss_dssp HHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHH
T ss_pred HHHHhcccccccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 77665321 123456667777777777788999998888777664322121 12 334444
Q ss_pred HHHHHHhC--CCc--hHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 000194 387 GNIARAMG--PVM--EPHVRGLLDIMFSA--GLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAAT 460 (1880)
Q Consensus 387 ~~la~~~g--~~~--~~~l~~ll~~l~~~--~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~ 460 (1880)
..+++... ..+ .+++..++..++.. .++++..+.+.. -| ...+.+.
T Consensus 317 ~~~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~----dp--~~~~~~~---------------------- 368 (959)
T d1wa5c_ 317 TAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFED----DP--IEYIRRD---------------------- 368 (959)
T ss_dssp HHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTT----CH--HHHHHHH----------------------
T ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCHHHHHHHhc----ch--HHHHHHH----------------------
Confidence 44333211 111 23444433322210 000000000000 00 0000000
Q ss_pred CCCCCccCCCccccccCCchhHHHHHHhhccc--ccCC---CcchhhHHHHHhhhcc--CCChHHHHHHHHHHHHhhhcc
Q 000194 461 PIRGNVMNIPQQVSDLNGSAPVQLALQTLARF--NFKG---HDLLEFARDSVVLYLD--DEDKATRKDAALCCCKLVANS 533 (1880)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~--~~~~---~~l~~~v~~~~~~~l~--~~~~~VR~aAa~~~~~l~~~~ 533 (1880)
.++.+.......|...+..+ .+.+ ..+.+++...+..+.. +.++..|.+|...++.+....
T Consensus 369 ------------~~~~~~~~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~ 436 (959)
T d1wa5c_ 369 ------------LEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAING 436 (959)
T ss_dssp ------------HHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSS
T ss_pred ------------hhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhh
Confidence 00000001122233333222 1111 1122344444434433 345667777666655554321
Q ss_pred CCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhc---cHhhHHHHHHHhCC
Q 000194 534 FSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLA---QADCLSAIFAALND 610 (1880)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~---~~~~l~~L~~~l~D 610 (1880)
... ....... .......+.+...+...+.. ..++.+.+|..++..++ .|...+. .+.+++.++..++|
T Consensus 437 ~~~----~~~~~~~-~~~~~~~~~l~~~v~~~l~~-~~~~~~~lr~~~~~~i~---~~~~~~~~~~~~~~~~~l~~~L~~ 507 (959)
T d1wa5c_ 437 NIT----NAGVSST-NNLLNVVDFFTKEIAPDLTS-NNIPHIILRVDAIKYIY---TFRNQLTKAQLIELMPILATFLQT 507 (959)
T ss_dssp CCB----TTBCCCB-CTTCCHHHHHHHHTHHHHHC-SSCSCHHHHHHHHHHHH---HTGGGSCHHHHHHHHHHHHHHTTC
T ss_pred hhh----hhhhhcc-cchhhHHHHHHHHHHHHHcc-CCCchHHHHHHHHHHHH---HHHhhccHHHHHHHHHHHHHHhCC
Confidence 100 0000000 00001222233333333321 24466788888877764 2222221 14578888999999
Q ss_pred CCHhHHHHHHHHHHhhhcCC-----------cccccHHHHHHHHHHHHHHhcCCCChH---hHHHHHHHHHHHHHhCccc
Q 000194 611 EDFDVREYAISVAGRLSEKN-----------PAYVLPALRRHLIQLLTYLEQSSADNK---CREESAKLLGCLIRNCERL 676 (1880)
Q Consensus 611 ~~~~VR~~a~~~l~~l~~~~-----------p~~v~p~l~~~l~~~l~~l~~~~~~~~---~r~~a~~~L~~l~~~~~~~ 676 (1880)
++..||..|..++.++.... ...+.|++..++..++..+........ ..+....++..+++..++.
T Consensus 508 ~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~ 587 (959)
T d1wa5c_ 508 DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDS 587 (959)
T ss_dssp SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTT
T ss_pred CchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987643 234678888877777776654311111 1245778889999999999
Q ss_pred ccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCC-chhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHH
Q 000194 677 IRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF-GMRQYISELMPLIVEALLDGAAVTKREVAVSTLG 755 (1880)
Q Consensus 677 ~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~-~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg 755 (1880)
+.||.+.+++.+.+.+........++.....++.+++.+....+. .+..+...++|.+...++.. ..+....++..++
T Consensus 588 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~-~~~~~~~~~~l~~ 666 (959)
T d1wa5c_ 588 IQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED-IQEFIPYVFQIIA 666 (959)
T ss_dssp TGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT-CTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHH
Confidence 999999999999887654221123566777888899998876654 56778889999999988754 3445677888888
Q ss_pred HHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCC
Q 000194 756 QVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQP 835 (1880)
Q Consensus 756 ~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1880)
.+....+. +.| .+.++++.++........ ..-..+..++.......|- .
T Consensus 667 ~~~~~~~~-~~~--~~~~l~~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~~~---------------------~------ 715 (959)
T d1wa5c_ 667 FVVEQSAT-IPE--SIKPLAQPLLAPNVWELK-GNIPAVTRLLKSFIKTDSS---------------------I------ 715 (959)
T ss_dssp HHHHHCSS-CCT--TTGGGHHHHTSGGGGCCT-TTHHHHHHHHHHHHHHHGG---------------------G------
T ss_pred HHHHhCCC-ccH--HHHHHHHHHhhHHHHHHh-hhHHHHHHHHHHHHHhCHH---------------------h------
Confidence 88777653 222 234555555433221211 1222333333221100000 0
Q ss_pred CcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCC-CCCCcchhhHHHHHHHhcCC-c
Q 000194 836 MDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG-CVPYLPKVLPDLFHTVRTCD-D 913 (1880)
Q Consensus 836 ~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~-~~~~l~~iip~ll~~l~~~~-~ 913 (1880)
+ .+. ..+++.+...+.++... ..++..+..++..++.. ..||++.++..++..+.+.. +
T Consensus 716 ---~--------~~~-----~~~l~~~~~~l~~~~~~---~~~~~ll~~ii~~~~~~~~~~~l~~i~~~~~~~l~~~~~~ 776 (959)
T d1wa5c_ 716 ---F--------PDL-----VPVLGIFQRLIASKAYE---VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTE 776 (959)
T ss_dssp ---C--------SCS-----HHHHHHHHHHHTCTTTH---HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCH
T ss_pred ---h--------cch-----HHHHHHHHHHHCCCcch---HHHHHHHHHHHHHCchhhhHhHHHHHHHHHHHHHHhcccH
Confidence 0 000 22344445555555432 24666777888887654 35789999988888887653 3
Q ss_pred chhHHHHHHHHHHHH
Q 000194 914 YLKDYITWKLGTLVS 928 (1880)
Q Consensus 914 ~~~~~~~~~l~~lv~ 928 (1880)
.....++..++.++.
T Consensus 777 ~~~~~~~~~~~~~~~ 791 (959)
T d1wa5c_ 777 RYVKKLTVFFGLISN 791 (959)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=5.6e-09 Score=129.59 Aligned_cols=425 Identities=13% Similarity=0.059 Sum_probs=239.8
Q ss_pred HHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcc----------
Q 000194 606 AALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCER---------- 675 (1880)
Q Consensus 606 ~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~---------- 675 (1880)
..+-+++.++|..|-+.|..+...+|..+.+ .++..+.+...+...|..|+-.|...+.....
T Consensus 7 ~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~-------~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~ 79 (458)
T d1ibrb_ 7 EKTVSPDRLELEAAQKFLERAAVENLPTFLV-------ELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 79 (458)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHHhCcCHHHHHHHHHHHHHHHhcCchHHHH-------HHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhh
Confidence 3334556666666666666666554322212 22222222213344555555555444432110
Q ss_pred --cccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcC-CchhhHHHHHH
Q 000194 676 --LIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDG-AAVTKREVAVS 752 (1880)
Q Consensus 676 --~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~-~~~~~r~~Al~ 752 (1880)
.-......+...++..+.++. + ++..++.+++.++..... ....+.+++.++..+.+. .+...+..++.
T Consensus 80 ~~l~~~~~~~i~~~ll~~~~~~~-----~-~~~~~~~~~~~i~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~ 151 (458)
T d1ibrb_ 80 LAIDANARREVKNYVLQTLGTET-----Y-RPSSASQCVAGIACAEIP--VNQWPELIPQLVANVTNPNSTEHMKESTLE 151 (458)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCCC-----S-SSCSHHHHHHHHHHHHGG--GTCCTTHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhccCCCc-----H-HHHHHHHHHHHHHHHhCC--cccCcchhHHHHHHHHhhcchHHHHHHHHH
Confidence 111123345555666665542 1 122334455555443221 123457788888887653 33456788999
Q ss_pred HHHHHHhhcCcc-cccCCcchHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCC
Q 000194 753 TLGQVVQSTGYV-ITPYNEYPQLLGLLLKMLNGE-LVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSG 830 (1880)
Q Consensus 753 ~Lg~l~~~~~~~-i~p~~~~p~ll~~Ll~~L~~~-~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~ 830 (1880)
+++.++...+.. ..+ ..+.+++.+...+.++ .+..+|..++++++.+.-..+..
T Consensus 152 ~l~~~~~~~~~~~~~~--~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~---------------------- 207 (458)
T d1ibrb_ 152 AIGYICQDIDPEQLQD--KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN---------------------- 207 (458)
T ss_dssp HHHHHHHHSCGGGTGG--GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH----------------------
T ss_pred HHHHHHhhccchhhhh--hHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhh----------------------
Confidence 999998776543 222 3367889999888654 47899999999988764211000
Q ss_pred CCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHH-h
Q 000194 831 QHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTV-R 909 (1880)
Q Consensus 831 ~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l-~ 909 (1880)
...+.+...+++.+...+.+++. ..+..+++++..+++..+..+.||+..++..++... .
T Consensus 208 ------------------~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 268 (458)
T d1ibrb_ 208 ------------------FDKESERHFIMQVVCEATQCPDT-RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK 268 (458)
T ss_dssp ------------------HTSHHHHHHHHHHHHHHTTCSSH-HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred ------------------hhhHHHHHHhHhhHHHHhcCCCH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 00111234566677777777764 456788999999999888778899888777765544 4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhH
Q 000194 910 TCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVIL 989 (1880)
Q Consensus 910 ~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~ 989 (1880)
+.++..+..++..+..+..... .......+.......+. .. .......+++.++
T Consensus 269 ~~~~~~~~~a~~~l~~i~~~~~--------~~~~~~~~~~~~~~~~~-----~~-------------~~~~~~~~~~~l~ 322 (458)
T d1ibrb_ 269 SDIDEVALQGIEFWSNVCDEEM--------DLAIEASEAAEQGRPPE-----HT-------------SKFYAKGALQYLV 322 (458)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHH--------HHHHHHCCTTCSSSCSS-----CC-------------CCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHH--------HHHHhhhhHHHhhhHHH-----HH-------------HHHHHHHHHHHHh
Confidence 4444555555544444432211 11101111111000000 00 0001223345566
Q ss_pred HHHHHhcccccc---cCchhhHHHHHHHHHHHhcch-hhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc---ccc
Q 000194 990 PCCIQVLSDAER---CNDYTYVLDILHTLEVFGGTL-DEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR---VQV 1062 (1880)
Q Consensus 990 p~ll~~l~~~~~---~~~~~~~~~il~~l~~~g~~~-~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~---~~~ 1062 (1880)
|.+.+.+.+.+. ..+......+..++..+...+ ++.+..++|.+...+..+ .+.+|.+|+.++|.++.. ..+
T Consensus 323 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~-~~~~r~aal~~l~~i~~~~~~~~~ 401 (458)
T d1ibrb_ 323 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQL 401 (458)
T ss_dssp HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTT
T ss_pred hhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCHhHH
Confidence 666666543211 111112222333333333222 234556777777777543 688999999999999864 346
Q ss_pred cchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhccc--cccchhHHHHHHH
Q 000194 1063 TGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGED--FTIFIPSIHKLLL 1115 (1880)
Q Consensus 1063 ~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~--f~~fip~i~~~l~ 1115 (1880)
.+|++.+++.+...++++++.+|.+|+.+|+.++..++.. ...|+|.+.+.|.
T Consensus 402 ~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~~ll~~ll 456 (458)
T d1ibrb_ 402 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 456 (458)
T ss_dssp CTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHh
Confidence 7899999999999999999999999999999999887643 3456666666654
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.03 E-value=4.7e-06 Score=113.52 Aligned_cols=395 Identities=11% Similarity=0.120 Sum_probs=234.0
Q ss_pred HhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCC---------chhhhH
Q 000194 657 KCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF---------GMRQYI 727 (1880)
Q Consensus 657 ~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~---------~~~~~~ 727 (1880)
..|..|..++..++...++.+.+.+-..+..++...... ...+...+.+++.++|.++..++. ...+..
T Consensus 376 ~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 453 (959)
T d1wa5c_ 376 TRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSD--PSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV 453 (959)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH
T ss_pred cHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccC--CccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHH
Confidence 346677788888888877655444444343333333322 123566677888888888754321 112233
Q ss_pred HhHHHHHHHHHhcC--CchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccC
Q 000194 728 SELMPLIVEALLDG--AAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALD 805 (1880)
Q Consensus 728 ~~l~p~l~~~l~d~--~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgald 805 (1880)
+-+.+.+...+... .....|..|++.+|+.+.... . ..++++++.+++.|.++ +..||..|..++..+-...
T Consensus 454 ~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~---~--~~~~~~~~~l~~~L~~~-~~~V~~~a~~al~~~~~~~ 527 (959)
T d1wa5c_ 454 DFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---K--AQLIELMPILATFLQTD-EYVVYTYAAITIEKILTIR 527 (959)
T ss_dssp HHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---H--HHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc---H--HHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHHhh
Confidence 33444444445432 234578888899988765432 1 24578999999999754 7899999999988764221
Q ss_pred ccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhh----HHHHHHH
Q 000194 806 PHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASY----HQKVVGS 881 (1880)
Q Consensus 806 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~----~~~~~~a 881 (1880)
.... .. ... ... ..... |...++..|+..+.+...... ...+..+
T Consensus 528 ~~~~-------------------~~----~~~-~~~------~~l~p-~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~ 576 (959)
T d1wa5c_ 528 ESNT-------------------SP----AFI-FHK------EDISN-STEILLKNLIALILKHGSSPEKLAENEFLMRS 576 (959)
T ss_dssp SCSS-------------------SC----CBS-SCG------GGTTT-THHHHHHHHHHHHHTTCCCHHHHTSCHHHHHH
T ss_pred cccc-------------------cc----hhh-ccH------HHHHh-hHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 1000 00 000 000 00112 335667777777755432221 2348889
Q ss_pred HHHHHHHhCCCCCCCcchhhHHHHHHHhcC-----CcchhHHHHHHHHHHHHHHHH-hHHHhHHHHHHHHHHhhcCCCCC
Q 000194 882 LMFIFKSMGLGCVPYLPKVLPDLFHTVRTC-----DDYLKDYITWKLGTLVSIVRQ-HIRKYLQELFSLISELWSSFSLP 955 (1880)
Q Consensus 882 l~~i~~~~~~~~~~~l~~iip~ll~~l~~~-----~~~~~~~~~~~l~~lv~~~~~-~i~~y~~~i~~~i~~~~~~~~~~ 955 (1880)
+..++...+..+.||.+.+++.+...+... ++.....++..++.++...++ ....+.+.+++.+...++....
T Consensus 577 l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~- 655 (959)
T d1wa5c_ 577 IFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQ- 655 (959)
T ss_dssp HHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccch-
Confidence 999999999999999999999998877532 123556777788888776543 4567788888888888875431
Q ss_pred cccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHH
Q 000194 956 ATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIR 1035 (1880)
Q Consensus 956 ~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~ 1035 (1880)
.....++.++..+....+ ...+-+..+++.++...... ..........++..+...+...-.....++..+..
T Consensus 656 -----~~~~~~~~l~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 728 (959)
T d1wa5c_ 656 -----EFIPYVFQIIAFVVEQSA-TIPESIKPLAQPLLAPNVWE-LKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQR 728 (959)
T ss_dssp -----TTHHHHHHHHHHHHHHCS-SCCTTTGGGHHHHTSGGGGC-CTTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHhCC-CccHHHHHHHHHHhhHHHHH-HhhhHHHHHHHHHHHHHhCHHhhcchHHHHHHHHH
Confidence 112246666666655443 23344445566655433221 12223345567777766665444444555666666
Q ss_pred hhcCCCcHHHHHHHHHHHHhhcccc---cccchhHhHHHHHHHhhCCCC-HHHHHHHHHHHHHHHHHhcc
Q 000194 1036 LFKVDAPVDIRRAAIETLTRLIPRV---QVTGHISSLVHHLKLVLDGKN-DELRKDAVDALCCLAHALGE 1101 (1880)
Q Consensus 1036 ~l~~~~~~~vr~~ai~~l~~l~~~~---~~~~~~~~ii~~l~~~l~~~~-~~l~~~al~~L~~l~~~~g~ 1101 (1880)
++.... .+..++..++.+.... .+.++++.++..+...+.... .......+..++.++...+.
T Consensus 729 ~l~~~~---~~~~~~~ll~~ii~~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (959)
T d1wa5c_ 729 LIASKA---YEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGS 795 (959)
T ss_dssp HHTCTT---THHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHCCCc---chHHHHHHHHHHHHHCchhhhHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCH
Confidence 664332 2356777777766543 356799999998888887543 45666666677777655543
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.75 E-value=9.7e-07 Score=108.15 Aligned_cols=192 Identities=9% Similarity=0.098 Sum_probs=122.6
Q ss_pred hHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccC
Q 000194 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1880)
.++.+...+.+++.+++..++.+++.++..++......+..-..+.+..+..+ .+...+..++++|+.++.........
T Consensus 231 ~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~ 309 (434)
T d1q1sc_ 231 VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQ 309 (434)
T ss_dssp CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcc-cchhhhHHHHHHHhhhccccchhHHH
Confidence 35566667777888899999999998887664322111111112233334445 57788999999999998765443322
Q ss_pred chH-HHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHH--hHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 000194 680 YIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS--ELMPLIVEALLDGAAVTKREVAVSTLGQ 756 (1880)
Q Consensus 680 y~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~--~l~p~l~~~l~d~~~~~~r~~Al~~Lg~ 756 (1880)
... .+++.++..+.++ ++.++..++.+++.++.........++- .+++.+++.+... +.+.+..++.+|..
T Consensus 310 i~~~~~i~~li~~l~~~-----~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~-d~~~~~~~l~~l~~ 383 (434)
T d1q1sc_ 310 VVNHGLVPFLVGVLSKA-----DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISN 383 (434)
T ss_dssp HHHTTCHHHHHHHHHSS-----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHhcc-----ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 222 3566777777764 7889999999999998776544333332 3588888888754 67788899999998
Q ss_pred HHhhcCccc--ccCCc---chHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000194 757 VVQSTGYVI--TPYNE---YPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1880)
Q Consensus 757 l~~~~~~~i--~p~~~---~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg 799 (1880)
+.......- .++.. -...++.+ ..|...++++++..+.+.|-
T Consensus 384 ll~~~~~~~~~~~~~~~~~~~~~~~~i-~~L~~~~n~~i~~~a~~il~ 430 (434)
T d1q1sc_ 384 IFQAAEKLGETEKLSIMIEECGGLDKI-EALQRHENESVYKASLNLIE 430 (434)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTSHHHH-HHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHcCCHHHH-HHHHcCCCHHHHHHHHHHHH
Confidence 876543210 11110 01123333 33555668999998887764
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=1.4e-06 Score=109.89 Aligned_cols=265 Identities=15% Similarity=0.078 Sum_probs=167.0
Q ss_pred HhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHH--HHHHHHHHHHHHhcCCChhHHHHHHHh
Q 000194 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL--IEELVEKLLIAAVADADVTVRHSIFSS 584 (1880)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1880)
+..++.+++..+|..|+..++.+...... .... -..+++.|+.......+++++..+..+
T Consensus 22 L~~lL~~~~~~v~~~A~~~l~~l~~~~~~------------------~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~ 83 (529)
T d1jdha_ 22 LTKLLNDEDQVVVNKAAVMVHQLSKKEAS------------------RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGT 83 (529)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHTSHHH------------------HHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhccHH------------------HHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45667888999999999999887642210 0011 134556666554556678888887777
Q ss_pred ccC-CCC--cchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHH
Q 000194 585 LYG-NRG--FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREE 661 (1880)
Q Consensus 585 l~~-~~~--fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~ 661 (1880)
|.. +.. .-..+.....++.|...+.+++.+++..|+.+|+.++..++..-.-....-.++.+..+..+ ++...+..
T Consensus 84 L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~~~~~ 162 (529)
T d1jdha_ 84 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAI 162 (529)
T ss_dssp HHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHHHH
T ss_pred HHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHc-cChHHHHH
Confidence 641 111 00112223458889999999999999999999999988776421111111122333344455 67888999
Q ss_pred HHHHHHHHHHhCcccccCc-hHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhh-hH-HhHHHHHHHHH
Q 000194 662 SAKLLGCLIRNCERLIRPY-IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQ-YI-SELMPLIVEAL 738 (1880)
Q Consensus 662 a~~~L~~l~~~~~~~~~py-~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~-~~-~~l~p~l~~~l 738 (1880)
++.+|..++......-... -...++.++..+... ....+...+..++..++.. ....+ .. ...++.+...+
T Consensus 163 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~----~~~~~~~~~~~~l~~ls~~--~~~~~~~~~~g~~~~L~~ll 236 (529)
T d1jdha_ 163 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTY----TYEKLLWTTSRVLKVLSVC--SSNKPAIVEAGGMQALGLHL 236 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTTS--TTHHHHHHHTTHHHHHHTTT
T ss_pred HHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhh----hhHHHHHHHHHHHhhhhcc--ccccchhhhhhhhhhHHHHh
Confidence 9999999986533211111 112355666666554 2556777777777776532 22222 22 24677888877
Q ss_pred hcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 739 LDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 739 ~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
.+. +...+..|+.++..+....... ......++.|+++++++ +..++..++.+++.+.
T Consensus 237 ~~~-~~~~~~~a~~~l~~ls~~~~~~----~~~~~~i~~Lv~ll~~~-~~~~~~~a~~~L~~l~ 294 (529)
T d1jdha_ 237 TDP-SQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLT 294 (529)
T ss_dssp TSS-CHHHHHHHHHHHHHHHTTCTTC----SCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHT
T ss_pred ccc-chhhhhhhhhHHHhccccccch----hhhhhcchhhhhhcccc-cHHHHHHHHHHHHhhc
Confidence 765 5667888999998876544332 22357889999998755 6889999998888775
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.59 E-value=1.3e-06 Score=106.96 Aligned_cols=366 Identities=14% Similarity=0.092 Sum_probs=218.3
Q ss_pred CCCCCCHHHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-CChhhhhhHHHHHh
Q 000194 17 GAGGGSLDALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-NDAAENLGALRAID 94 (1880)
Q Consensus 17 ~~~~~~~~~~~~l~~~l~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~~~~~r~~~i~ai~ 94 (1880)
..++.+.-.+..+++.|+|.+.+.+ .|+.+|+.++... .+-..+.+.+ ..+.+.+.+++++ ++...|..++.++.
T Consensus 6 ~~~~~~~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~-~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~v~~~a~~~L~ 82 (434)
T d1q1sc_ 6 SNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSRE-KQPPIDNIIR--AGLIPKFVSFLGKTDCSPIQFESAWALT 82 (434)
T ss_dssp STTSSSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSS-SCCCHHHHHH--TTCHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-CCchHHHHHH--CCCHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 3455555568889999999975544 4888888775211 1111122211 1245566677754 45667777888888
Q ss_pred HhhccccCcchhHH--HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHH-HHHHHHHhhhcCCCcch---
Q 000194 95 ELIDVALGENASKV--SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEY--- 168 (1880)
Q Consensus 95 ~Li~~~~~~~~~~~--~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~--- 168 (1880)
.+..... +....+ ....+.|..++. +++.++++.|+++|+.++.........+.+ ..+..++..+.......
T Consensus 83 ~la~~~~-~~~~~i~~~~~i~~l~~~L~-~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~ 160 (434)
T d1q1sc_ 83 NIASGTS-EQTKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 160 (434)
T ss_dssp HHHTSCH-HHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCH
T ss_pred HHhcCCh-hhhhHhhhccchhhhhhccc-cCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchH
Confidence 8864421 111111 123445666664 568999999999999998742211111112 23444455554322211
Q ss_pred -hHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH-HHHHHHHHH
Q 000194 169 -RRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW-YYRMFEATQ 245 (1880)
Q Consensus 169 -~R~aA~~~l~~la~~~p~-~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~-~~~~l~~~~ 245 (1880)
....+...+..++.+.+. .-......+++.++..+.++++.+|..|+.+++.+... ........ ...+++.+.
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~----~~~~~~~~~~~~~~~~Lv 236 (434)
T d1q1sc_ 161 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG----PNERIEMVVKKGVVPQLV 236 (434)
T ss_dssp HHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS----CHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchh----hhhhHHHHhhcccchhcc
Confidence 112234455566655433 33456778899999999999999999999988876421 11111111 123555666
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH-HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HH
Q 000194 246 DGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY-REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KI 323 (1880)
Q Consensus 246 ~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~-~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~ 323 (1880)
..+.++ +.+.+..++.+++.+.....+....-+ ..+++.+...+++.++.||..++.++..++...++. ..... ..
T Consensus 237 ~ll~~~-~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~~ 314 (434)
T d1q1sc_ 237 KLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ-IQQVVNHG 314 (434)
T ss_dssp HHHTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHH-HHHHHHTT
T ss_pred cccccc-hhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchh-HHHHhhhh
Confidence 666665 367888888899888764433222211 124556677788999999999999999998765542 22122 34
Q ss_pred HHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhh--hHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHh
Q 000194 324 CMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1880)
Q Consensus 324 ~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l--~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~ 393 (1880)
+++.+...+..+. .|..|..+++.++.....+...++ ..+++.+.+.+...+.+....++.++..+.+..
T Consensus 315 ~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~ 388 (434)
T d1q1sc_ 315 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 388 (434)
T ss_dssp CHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 6777777776554 477899999998876554322222 235666777665443333346777888777643
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=3.8e-06 Score=105.81 Aligned_cols=431 Identities=14% Similarity=0.078 Sum_probs=246.7
Q ss_pred hHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH--HHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccc
Q 000194 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLI 677 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~ 677 (1880)
.++.|...++|++..+|..|...++.++...+.. .... ...+..++..+..+ ++.+.++.|+.+|..+..... ..
T Consensus 18 aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~-~~~~~~~~~v~~l~~~L~~~-~~~~~~~~a~~~L~~l~~~~~-~~ 94 (529)
T d1jdha_ 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNT-NDVETARCTAGTLHNLSHHRE-GL 94 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHH-HHHHTCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTSHH-HH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHH-HHHHHhhhHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhCCch-hH
Confidence 4788888999999999999999999998765321 0111 12233344445555 677889999999988864321 11
Q ss_pred cCchH-HHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhh-hHHhHHHHHHHHHhcCCchhhHHHHHHHHH
Q 000194 678 RPYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQ-YISELMPLIVEALLDGAAVTKREVAVSTLG 755 (1880)
Q Consensus 678 ~py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~-~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg 755 (1880)
...++ ..++.++..++++ ++.++..++.+++.++......-.. .-...+|.++..+.+. +.+.+..|..+|+
T Consensus 95 ~~i~~~g~i~~Li~lL~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~ 168 (529)
T d1jdha_ 95 LAIFKSGGIPALVKMLGSP-----VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQ 168 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC-CHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHhCCC-----CHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHcc-ChHHHHHHHHHHH
Confidence 11111 3467788888764 7889999999999988654432111 2345788999988765 5778999999999
Q ss_pred HHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCC
Q 000194 756 QVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQP 835 (1880)
Q Consensus 756 ~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1880)
.++......-... .....++.+..+++......++..+..+++.+.. ++...+
T Consensus 169 ~l~~~~~~~~~~~-~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~------------------------- 221 (529)
T d1jdha_ 169 ILAYGNQESKLII-LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKP------------------------- 221 (529)
T ss_dssp HHHTTCHHHHHHH-HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHH-------------------------
T ss_pred HHhhhhhHHHHHH-HhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc-cccccc-------------------------
Confidence 9875432210000 0123466777777666677888888888877642 211100
Q ss_pred CcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcch
Q 000194 836 MDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYL 915 (1880)
Q Consensus 836 ~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~ 915 (1880)
.....-.++.|.+.+.+++.. ....++.++..+.... ........++|.++..++..++..
T Consensus 222 ----------------~~~~~g~~~~L~~ll~~~~~~-~~~~a~~~l~~ls~~~--~~~~~~~~~i~~Lv~ll~~~~~~~ 282 (529)
T d1jdha_ 222 ----------------AIVEAGGMQALGLHLTDPSQR-LVQNCLWTLRNLSDAA--TKQEGMEGLLGTLVQLLGSDDINV 282 (529)
T ss_dssp ----------------HHHHTTHHHHHHTTTTSSCHH-HHHHHHHHHHHHHTTC--TTCSCCHHHHHHHHHHTTCSCHHH
T ss_pred ----------------hhhhhhhhhhHHHHhcccchh-hhhhhhhHHHhccccc--cchhhhhhcchhhhhhcccccHHH
Confidence 000112456677777776643 2234455555443221 123345788999999998888778
Q ss_pred hHHHHHHHHHHHHHH---HHhHH--HhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhh--hhhc--cch
Q 000194 916 KDYITWKLGTLVSIV---RQHIR--KYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALND--EFRT--HLP 986 (1880)
Q Consensus 916 ~~~~~~~l~~lv~~~---~~~i~--~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~--~f~~--yl~ 986 (1880)
++.+...++.+...- +..+. ..++.++..+... ... +..+..++.++..++..... .... -..
T Consensus 283 ~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~---~~~-----~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~ 354 (529)
T d1jdha_ 283 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA---GDR-----EDITEPAICALRHLTSRHQEAEMAQNAVRLH 354 (529)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH---TTC-----HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhh---hcc-----hhHHHHHHHHhhcccchhhcchhhhhhHHhc
Confidence 888877777765321 11121 1233333333211 110 01111233344333311110 0111 123
Q ss_pred hhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhh--h--hhhHHHHHHhhcCC---------------------C
Q 000194 987 VILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEH--M--HLLLPALIRLFKVD---------------------A 1041 (1880)
Q Consensus 987 ~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~--~--~~ilp~l~~~l~~~---------------------~ 1041 (1880)
..++.+++.+...+ +......++.++..++.+-+.. + .-.+|.+++++... .
T Consensus 355 ~~l~~L~~ll~~~~---~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (529)
T d1jdha_ 355 YGLPVVVKLLHPPS---HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 431 (529)
T ss_dssp TCHHHHHHTTSTTC---CHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBC
T ss_pred ccchhHHHHHhccc---hHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccc
Confidence 45677777776432 2223334444454443322111 1 12466666665321 2
Q ss_pred cHHHHHHHHHHHHhhcccccccch--hHhHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 000194 1042 PVDIRRAAIETLTRLIPRVQVTGH--ISSLVHHLKLVLDGKNDELRKDAVDALCCLA 1096 (1880)
Q Consensus 1042 ~~~vr~~ai~~l~~l~~~~~~~~~--~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~ 1096 (1880)
..+++..+..+++.++....-... -...+++|+..|.+++++++..+..+|+.|+
T Consensus 432 ~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 488 (529)
T d1jdha_ 432 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 488 (529)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 346677777777777654221111 1235678899999889999999999998875
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.52 E-value=5.5e-07 Score=112.94 Aligned_cols=352 Identities=13% Similarity=0.104 Sum_probs=217.3
Q ss_pred hhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHH-HHHHHHHHHHHhcCCChhHHHHHHHhccC
Q 000194 509 LYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI-EELVEKLLIAAVADADVTVRHSIFSSLYG 587 (1880)
Q Consensus 509 ~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~ 587 (1880)
..+.+++.+.+..|...+++++..... +....++ ..+++.|+.....+.++.++..++.+|..
T Consensus 83 ~~~~s~~~~~~~~a~~~~r~~ls~~~~----------------~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~n 146 (503)
T d1wa5b_ 83 QQLNSDDMQEQLSATVKFRQILSREHR----------------PPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTN 146 (503)
T ss_dssp HHHSCSSHHHHHHHHHHHHHHTCCSSS----------------CSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcCCC----------------chHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 446777888888888888887743221 0011222 34566777665567788899887777641
Q ss_pred -CCC---cchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHH
Q 000194 588 -NRG---FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESA 663 (1880)
Q Consensus 588 -~~~---fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~ 663 (1880)
+.. ....+.....++.+...+++++.+++..|+.+|+.++..++..-.-....-..+.+..+..+ .....+..++
T Consensus 147 i~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~-~~~~~~~~~~ 225 (503)
T d1wa5b_ 147 IASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTAT 225 (503)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHH
T ss_pred HHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhccc-CCHHHHHHHH
Confidence 111 11112233468888888999999999999999999998775321111111112223333344 5677788899
Q ss_pred HHHHHHHHhCcccc-cCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH-HhHHHHHHHHHhcC
Q 000194 664 KLLGCLIRNCERLI-RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVEALLDG 741 (1880)
Q Consensus 664 ~~L~~l~~~~~~~~-~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~l~p~l~~~l~d~ 741 (1880)
++|..++....... ...+..+++.++..+... ++.+...++.+++.++....+.....+ ..+++.++..+...
T Consensus 226 ~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~-----d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~ 300 (503)
T d1wa5b_ 226 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-----DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 300 (503)
T ss_dssp HHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-----CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHHhcCCccchHHHHHHHHHHHHHHHhccc-----cHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCC
Confidence 99999986533221 123445677777777654 778888889999988864433333333 24678888877754
Q ss_pred CchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCccc
Q 000194 742 AAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGE 821 (1880)
Q Consensus 742 ~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~ 821 (1880)
+...+..|+.+|+.++...+.... ......+++.+..+++++ ++.+|.+++.+++.+.+-+|......
T Consensus 301 -~~~v~~~al~~l~nl~~~~~~~~~-~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i--------- 368 (503)
T d1wa5b_ 301 -STLVQTPALRAVGNIVTGNDLQTQ-VVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAV--------- 368 (503)
T ss_dssp -CHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHH---------
T ss_pred -chhhhhhHHHHHHHHHHHHHHHHH-hhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHH---------
Confidence 577889999999999866543221 111235778888888754 78999999999998865433211100
Q ss_pred ccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCC--CCCCc--
Q 000194 822 VTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG--CVPYL-- 897 (1880)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~--~~~~l-- 897 (1880)
....+++.++..|.+++. ..+..++.++.++....... ...++
T Consensus 369 --------------------------------~~~~~l~~li~~l~~~~~-~v~~~a~~~l~nl~~~~~~~~~~~~~l~~ 415 (503)
T d1wa5b_ 369 --------------------------------IDANLIPPLVKLLEVAEY-KTKKEACWAISNASSGGLQRPDIIRYLVS 415 (503)
T ss_dssp --------------------------------HHTTCHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHTTTCTHHHHHHHH
T ss_pred --------------------------------HHccccchhHHhcccCCh-hHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 001234556677766654 34557778888877654322 12232
Q ss_pred chhhHHHHHHHhcCCcchhHHHHHHHHHHH
Q 000194 898 PKVLPDLFHTVRTCDDYLKDYITWKLGTLV 927 (1880)
Q Consensus 898 ~~iip~ll~~l~~~~~~~~~~~~~~l~~lv 927 (1880)
..+++.++..+...++.....++..+..++
T Consensus 416 ~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll 445 (503)
T d1wa5b_ 416 QGCIKPLCDLLEIADNRIIEVTLDALENIL 445 (503)
T ss_dssp TTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 346777888887666555555555444443
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.40 E-value=5.8e-06 Score=103.28 Aligned_cols=316 Identities=12% Similarity=0.086 Sum_probs=203.4
Q ss_pred HHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHH--HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhH
Q 000194 72 DRISGLLESNDAAENLGALRAIDELIDVALGENASKVSK--FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADE 149 (1880)
Q Consensus 72 ~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~--~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~ 149 (1880)
+.+.+.+++++...+..|+.++..++.......-..+.+ ..+.|..++....+.++...|+++|+.++.........+
T Consensus 79 ~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~ 158 (503)
T d1wa5b_ 79 PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVV 158 (503)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444556788899999999999998876532211112221 245666666545578899999999999986421112222
Q ss_pred HHH-HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchh-chHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q 000194 150 VEF-QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNV-HVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK 227 (1880)
Q Consensus 150 v~~-~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~-~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~ 227 (1880)
++. .++.++..|.+ .+...+..|+.+|+.|+...+..-.. .-..+++.++..+.++++.++..++.++..+...
T Consensus 159 ~~~g~i~~l~~lL~s-~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~--- 234 (503)
T d1wa5b_ 159 VDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG--- 234 (503)
T ss_dssp HHTTCHHHHHHHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC---
T ss_pred HhCCChHHHHHHhcC-CChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcC---
Confidence 222 34555555553 34467888899999998765542111 1124567778888999999999999988877542
Q ss_pred hchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhH
Q 000194 228 RETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLP 306 (1880)
Q Consensus 228 r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~ 306 (1880)
............+++.+...+.+++ .+.+..++.++..+.....+.....++ .+++.++..+.+.+..++..++.+++
T Consensus 235 ~~~~~~~~~~~~~l~~l~~~l~~~d-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~ 313 (503)
T d1wa5b_ 235 KKPQPDWSVVSQALPTLAKLIYSMD-TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 313 (503)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCC-HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHH
Confidence 1111122334556777777777664 688888888999888755544333332 36677888889999999999999999
Q ss_pred hHhhhChhhHHHHHH-HHHHHHHHHhhcCCCC--cchHHHHHHHHHhhchhhhhhhh-hHHHHHHHHhhcCCCCCCCchH
Q 000194 307 RIAHFLRDRFVTNYL-KICMNHILTVLRIPAE--RDSGFIALGEMAGALDGELFHYL-PTITSHLREAIAPRRGKPSLEA 382 (1880)
Q Consensus 307 ~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~~--r~~a~~alg~la~~v~~~~~p~l-~~i~~~l~~~l~~~~~~~~~~a 382 (1880)
.++...... ....+ ..+++.+...+..++. |..++.+|++++..-.......+ ..+++.+.+.+.....+....+
T Consensus 314 nl~~~~~~~-~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a 392 (503)
T d1wa5b_ 314 NIVTGNDLQ-TQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 392 (503)
T ss_dssp HHTTSCHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHH-HHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHH
Confidence 998755432 22122 3577888888876553 67899999998754433222222 2355555665544433344577
Q ss_pred HHHHHHHHHHh
Q 000194 383 LACVGNIARAM 393 (1880)
Q Consensus 383 ~~~l~~la~~~ 393 (1880)
..+++.++...
T Consensus 393 ~~~l~nl~~~~ 403 (503)
T d1wa5b_ 393 CWAISNASSGG 403 (503)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhcc
Confidence 88888887653
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.27 E-value=1.8e-05 Score=89.54 Aligned_cols=240 Identities=14% Similarity=0.080 Sum_probs=153.2
Q ss_pred chhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHH
Q 000194 479 SAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI 558 (1880)
Q Consensus 479 ~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1880)
......|+..|+.+. . +-.-+.+..++.++++.||..|+.+++.+..... .-
T Consensus 33 ~~vR~~A~~~L~~~~---~---~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~----------------------~~ 84 (276)
T d1oyza_ 33 SLKRISSARVLQLRG---G---QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK----------------------CE 84 (276)
T ss_dssp HHHHHHHHHHHHHHC---C---HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT----------------------TH
T ss_pred HHHHHHHHHHHHhhC---C---HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc----------------------cc
Confidence 345677888888773 2 2233555677889999999999888876532110 12
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchh--hccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccH
Q 000194 559 EELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDF--LAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLP 636 (1880)
Q Consensus 559 ~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~--L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p 636 (1880)
..++..++.....|+++.||..++.+|.. +... ...+..++.+...++|+++.||..++..++..... ...|
T Consensus 85 ~~~~~~l~~~~l~d~~~~vr~~a~~aL~~---~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~~---~~~~ 158 (276)
T d1oyza_ 85 DNVFNILNNMALNDKSACVRATAIESTAQ---RCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK---ATIP 158 (276)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHH---HHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------CCHH
T ss_pred cchHHHHHHHHhcCCChhHHHHHHHHHHH---HccccchhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcchH---HHHH
Confidence 23344555666789999999999998851 1111 11235677888889999999999999988875432 2233
Q ss_pred HHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHH
Q 000194 637 ALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLA 716 (1880)
Q Consensus 637 ~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La 716 (1880)
.+.. +... .+...+..+...++.+.... ......++..+.+. +..++..+..+++.+.
T Consensus 159 ~l~~--------l~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-----~~~~~~~~~~al~~~~ 216 (276)
T d1oyza_ 159 LLIN--------LLKD-PNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDK-----NEEVRIEAIIGLSYRK 216 (276)
T ss_dssp HHHH--------HHTC-SSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCS-----CHHHHHHHHHHHHHTT
T ss_pred HHHH--------hccc-ccchhhhhHHHHHHhhhccc--------cccchhhhhhhhhh-----hhhhhhhhccccchhh
Confidence 3222 2223 44555555555554432221 23344455555543 6777777776665432
Q ss_pred HhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHH
Q 000194 717 RVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLK 796 (1880)
Q Consensus 717 ~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~ 796 (1880)
. ...+|.+++.+.|+ ++|..|+.+||.+. . |..++.|...+.++.+..+|..|+.
T Consensus 217 ----~------~~~~~~L~~~l~d~---~vr~~a~~aL~~ig----~--------~~~~~~L~~~l~~~~d~~vr~~A~~ 271 (276)
T d1oyza_ 217 ----D------KRVLSVLCDELKKN---TVYDDIIEAAGELG----D--------KTLLPVLDTMLYKFDDNEIITSAID 271 (276)
T ss_dssp ----C------GGGHHHHHHHHTSS---SCCHHHHHHHHHHC----C--------GGGHHHHHHHHTTSSCCHHHHHHHH
T ss_pred ----h------hhhHHHHHHHhCCh---HHHHHHHHHHHHcC----C--------HHHHHHHHHHHccCCCHHHHHHHHH
Confidence 1 35677888888754 58999999999862 1 4567888888877667899999988
Q ss_pred HHH
Q 000194 797 VLG 799 (1880)
Q Consensus 797 ~lg 799 (1880)
.|+
T Consensus 272 ~L~ 274 (276)
T d1oyza_ 272 KLK 274 (276)
T ss_dssp HHT
T ss_pred HHc
Confidence 764
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=6.4e-05 Score=84.84 Aligned_cols=246 Identities=13% Similarity=0.098 Sum_probs=159.8
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHH
Q 000194 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1880)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1880)
.+.|+++.||..++..|.. ...++.++.+...++|+++.||..|+..|+.+....+. .+.. +..++..
T Consensus 27 ~L~d~~~~vR~~A~~~L~~-------~~~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~--~~~~---~~~l~~~ 94 (276)
T d1oyza_ 27 LLDDHNSLKRISSARVLQL-------RGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC--EDNV---FNILNNM 94 (276)
T ss_dssp HTTCSSHHHHHHHHHHHHH-------HCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT--HHHH---HHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHh-------hCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc--ccch---HHHHHHH
Confidence 5789999999999999852 22356789999999999999999999999998754432 1221 2222333
Q ss_pred HhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHH
Q 000194 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS 728 (1880)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~ 728 (1880)
+.++ +++..|..++..|+.+....+ .+.+.+++.+...+.+. ++.++..++.+++.... +
T Consensus 95 ~l~d-~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~-----~~~vr~~a~~~l~~~~~----------~ 154 (276)
T d1oyza_ 95 ALND-KSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDK-----STNVRRATAFAISVIND----------K 154 (276)
T ss_dssp HHHC-SCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCS-----CHHHHHHHHHHHHTC-------------
T ss_pred HhcC-CChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCc-----chHHHHHHHHHHhhcch----------H
Confidence 3345 678899999999999886643 23456667777777764 67787777766654322 2
Q ss_pred hHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccc
Q 000194 729 ELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHA 808 (1880)
Q Consensus 729 ~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~ 808 (1880)
..++.+...+.+. +..+|..+..+++.+... .+.....+...+. +.+..+|..++.++|.+|.
T Consensus 155 ~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~~~~~~~~~~~~al~~~~~----- 217 (276)
T d1oyza_ 155 ATIPLLINLLKDP-NGDVRNWAAFAININKYD----------NSDIRDCFVEMLQ-DKNEEVRIEAIIGLSYRKD----- 217 (276)
T ss_dssp CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCC----------CHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHhcccc-cchhhhhHHHHHHhhhcc----------ccccchhhhhhhh-hhhhhhhhhhccccchhhh-----
Confidence 3355666666655 456777777776654321 2345666666665 4478899998888877651
Q ss_pred hhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHH
Q 000194 809 HKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKS 888 (1880)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~ 888 (1880)
..+++.|++.++|+.. ...++.++..
T Consensus 218 -----------------------------------------------~~~~~~L~~~l~d~~v---r~~a~~aL~~---- 243 (276)
T d1oyza_ 218 -----------------------------------------------KRVLSVLCDELKKNTV---YDDIIEAAGE---- 243 (276)
T ss_dssp -----------------------------------------------GGGHHHHHHHHTSSSC---CHHHHHHHHH----
T ss_pred -----------------------------------------------hhhHHHHHHHhCChHH---HHHHHHHHHH----
Confidence 0123456666777642 2356666554
Q ss_pred hCCCCCCCcchhhHHHHHHHhcC-CcchhHHHHHHH
Q 000194 889 MGLGCVPYLPKVLPDLFHTVRTC-DDYLKDYITWKL 923 (1880)
Q Consensus 889 ~~~~~~~~l~~iip~ll~~l~~~-~~~~~~~~~~~l 923 (1880)
+|. +..+|.+...+.+. +..+|..++..|
T Consensus 244 ig~------~~~~~~L~~~l~~~~d~~vr~~A~~~L 273 (276)
T d1oyza_ 244 LGD------KTLLPVLDTMLYKFDDNEIITSAIDKL 273 (276)
T ss_dssp HCC------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred cCC------HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 453 46788888877764 345666655543
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=0.005 Score=71.88 Aligned_cols=135 Identities=19% Similarity=0.169 Sum_probs=98.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.....|...+.+..+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..++......
T Consensus 235 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~ 301 (388)
T d1w3ba_ 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH----------FPDAYCNLANALKEKGS---VAEAEDCYNTALRLC 301 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS----------CHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHhhhccC
Confidence 45778889999999999999999999998877652 36777888888888885 678999888765432
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
.. .+.++..+|.-.... ...++.++.|+++++.+|+...+|+..|....+
T Consensus 302 ~~----------------------~~~~~~~l~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 351 (388)
T d1w3ba_ 302 PT----------------------HADSLNNLANIKREQ------GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-- 351 (388)
T ss_dssp TT----------------------CHHHHHHHHHHHHTT------TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT--
T ss_pred Cc----------------------cchhhhHHHHHHHHC------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Confidence 11 122233333333222 346889999999999999999999998877543
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
.+ -...|++.|-+++.+.
T Consensus 352 -----~g-------~~~~A~~~~~~al~l~ 369 (388)
T d1w3ba_ 352 -----QG-------KLQEALMHYKEAIRIS 369 (388)
T ss_dssp -----TT-------CCHHHHHHHHHHHTTC
T ss_pred -----cC-------CHHHHHHHHHHHHHhC
Confidence 11 1237899999999875
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=3.3e-05 Score=86.76 Aligned_cols=178 Identities=16% Similarity=0.120 Sum_probs=123.1
Q ss_pred HHHHH-HHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHH-HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccccc
Q 000194 601 LSAIF-AALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIR 678 (1880)
Q Consensus 601 l~~L~-~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~ 678 (1880)
++.++ .++++++.+||..|..+|+.++.++|..-..... ..+..++.-+.++ .++..|..++.+|+.++...+....
T Consensus 60 ~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~v~~~a~~aL~~l~~~~~~~~~ 138 (264)
T d1xqra1 60 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD-ACDTVRVKALFAISCLVREQEAGLL 138 (264)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcC-CCHHHHHHHHHHHHHHhccchhhHH
Confidence 44444 5788899999999999999999998753222222 2233344444445 6788899999999999987664433
Q ss_pred Cc-hHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHH-hHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 000194 679 PY-IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS-ELMPLIVEALLDGAAVTKREVAVSTLGQ 756 (1880)
Q Consensus 679 py-~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~-~l~p~l~~~l~d~~~~~~r~~Al~~Lg~ 756 (1880)
.+ -...++.+++.+.++ +..+...++.+++.++...++....+.. ..+|.++..+.+. +.+.|+.|+.+|+.
T Consensus 139 ~~~~~~gi~~L~~lL~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~-~~~~~~~a~~aL~~ 212 (264)
T d1xqra1 139 QFLRLDGFSVLMRAMQQQ-----VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCS 212 (264)
T ss_dssp HHHHTTHHHHHHHHHHSS-----CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHhcC-----chHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 32 224577888888764 7888888899999988766555555444 3789999999876 57899999999999
Q ss_pred HHhhcCccc----ccCCcchHHHHHHHHHhcCC
Q 000194 757 VVQSTGYVI----TPYNEYPQLLGLLLKMLNGE 785 (1880)
Q Consensus 757 l~~~~~~~i----~p~~~~p~ll~~Ll~~L~~~ 785 (1880)
++......+ .+-...+.++..+.+.+...
T Consensus 213 L~~~~~~~~~~~~~~~l~~~~~L~~~~~~~~~~ 245 (264)
T d1xqra1 213 LVTDFPQGVRECREPELGLEELLRHRCQLLQQH 245 (264)
T ss_dssp HHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHhhhhHHHHHHHHHHhccch
Confidence 987654321 11122345666666666444
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=0.011 Score=68.86 Aligned_cols=166 Identities=11% Similarity=0.135 Sum_probs=89.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|...+.+....|+++.|...+.+....++ ..+......+...+..|+ ..+|+..+++.+....
T Consensus 202 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p 268 (388)
T d1w3ba_ 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP----------NHAVVHGNLACVYYEQGL---IDLAIDTYRRAIELQP 268 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh----------hHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCC
Confidence 456677777777777777777776666554432 124445555666666663 4567766666543100
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1880)
. .+.++..+|.-.... ...++.++.|+.+....|.....|...|....+
T Consensus 269 ------------------~----~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 317 (388)
T d1w3ba_ 269 ------------------H----FPDAYCNLANALKEK------GSVAEAEDCYNTALRLCPTHADSLNNLANIKRE--- 317 (388)
T ss_dssp ------------------S----CHHHHHHHHHHHHHH------SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT---
T ss_pred ------------------C----CHHHHHHHHHHHHHc------CCHHHHHHHHHhhhccCCccchhhhHHHHHHHH---
Confidence 0 011222223222222 123556666777777777766666666654322
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000194 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1880)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1880)
. .-...|++.|-+++... ++ .......+=.+++..|..++-.+.+++.+.
T Consensus 318 ----~-------~~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 318 ----Q-------GNIEEAVRLYRKALEVF-----PE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp ----T-------TCHHHHHHHHHHHTTSC-----TT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred ----C-------CCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 11235777777777653 22 233445555666666776666555555543
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.00043 Score=77.27 Aligned_cols=184 Identities=14% Similarity=0.106 Sum_probs=124.2
Q ss_pred cchhHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHH-HHHHHH
Q 000194 166 VEYRRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY-YRMFEA 243 (1880)
Q Consensus 166 ~~~~R~aA~~~l~~la~~~p~-~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~-~~~l~~ 243 (1880)
++..|.+|+..|..+++.... .-.-.+..+.+.+...+.++++.||..|+.+++.+...- +..+.... ...++.
T Consensus 30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~----~~~~~~~~~~~~i~~ 105 (264)
T d1xqra1 30 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV----AAIQEQVLGLGALRK 105 (264)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC----HHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCchHH
Confidence 456788999999999976332 112234445555556888999999999999999876421 11122221 245666
Q ss_pred HHhhccCCCChhHHHHHHHHHHHHHHcchhhhHH-HHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-
Q 000194 244 TQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMS-RYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL- 321 (1880)
Q Consensus 244 ~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~-~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl- 321 (1880)
+...+.+..+.+++..++.++..++....+.... .-...++.++..+.+.++.++..++.+|..++...++.... +.
T Consensus 106 Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~ 184 (264)
T d1xqra1 106 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGT-LCS 184 (264)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHH-HHH
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHH-HHH
Confidence 6665643334678899999999998754432111 12234667778888999999999999999998877654322 22
Q ss_pred HHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchh
Q 000194 322 KICMNHILTVLRIPA--ERDSGFIALGEMAGALDG 354 (1880)
Q Consensus 322 ~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~ 354 (1880)
...++.|...|+.+. .|..|+.+|+.++...+.
T Consensus 185 ~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~ 219 (264)
T d1xqra1 185 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ 219 (264)
T ss_dssp TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHH
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHH
Confidence 346888888887654 478999999999866554
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=0.0032 Score=75.48 Aligned_cols=153 Identities=12% Similarity=0.046 Sum_probs=92.1
Q ss_pred HHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHH-HHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccC
Q 000194 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRR-HLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1880)
Q Consensus 601 l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~-~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1880)
+|.|+..|++++++||..|...|+.++..++.. ...+.+ -.++.|..+..+ ++.+.|+.|+.+|+.++...+..-..
T Consensus 4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~-~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~L~~~~~~~~~~ 81 (457)
T d1xm9a1 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESA-KQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSH-HHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHH-HHHHHHCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 677888889999999999999999999877542 111111 011222333344 67889999999999998544321111
Q ss_pred chH-HHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHH---------------hcCCc
Q 000194 680 YIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEAL---------------LDGAA 743 (1880)
Q Consensus 680 y~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l---------------~d~~~ 743 (1880)
+.. ..++.++..+... .++.++..++.++..++....... .....-++.++..+ .+..+
T Consensus 82 i~~~g~v~~li~~l~~~----~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 156 (457)
T d1xm9a1 82 TRRQNGIREAVSLLRRT----GNAEIQKQLTGLLWNLSSTDELKE-ELIADALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHTTCHHHHHHHHTTC----CCHHHHHHHHHHHHHHHTSSSTHH-HHHHHHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHHCCChHHHHHHHhcc----CcHHHHHHHHHHHHHHHhhhhhHH-HHHhcccHHHHHHHHhhhhhhhcchhhhhccccc
Confidence 111 1355666666543 367788888889988876543322 22223333333322 12234
Q ss_pred hhhHHHHHHHHHHHHhh
Q 000194 744 VTKREVAVSTLGQVVQS 760 (1880)
Q Consensus 744 ~~~r~~Al~~Lg~l~~~ 760 (1880)
...+..+..++..++..
T Consensus 157 ~~v~~~a~~~l~~~~~~ 173 (457)
T d1xm9a1 157 PEVFFNATGCLRNLSSA 173 (457)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 45667788888776544
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.17 E-value=0.0068 Score=72.49 Aligned_cols=164 Identities=18% Similarity=0.146 Sum_probs=100.0
Q ss_pred hccHhhHHHHHHHh-CCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHH-----HHHHHHHhcCCCChHhHHHHHHHHHH
Q 000194 595 LAQADCLSAIFAAL-NDEDFDVREYAISVAGRLSEKNPAYVLPALRRHL-----IQLLTYLEQSSADNKCREESAKLLGC 668 (1880)
Q Consensus 595 L~~~~~l~~L~~~l-~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l-----~~~l~~l~~~~~~~~~r~~a~~~L~~ 668 (1880)
+.....++.+...+ ...+.+++..+...+..++...........+..+ ++.+..+..+ ++...+..++.+++.
T Consensus 279 ~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~-~~~~v~~~a~~~l~~ 357 (457)
T d1xm9a1 279 LYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS-GNSDVVRSGASLLSN 357 (457)
T ss_dssp GGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTC-SCHHHHHHHHHHHHH
T ss_pred HHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcC-ccHHHHHHHHHHHHH
Confidence 34445666665544 3456788888999999888766433222222221 2333344445 678889999999999
Q ss_pred HHHhCcccccCchHHHHHHHHHHhccCCC-CCCChhHHHHHHHHHHHHHHhcCCchhhhHH-hHHHHHHHHHhcCCchhh
Q 000194 669 LIRNCERLIRPYIAPIHKALVARLLEGTG-INANNGIISGVLVTVGDLARVGGFGMRQYIS-ELMPLIVEALLDGAAVTK 746 (1880)
Q Consensus 669 l~~~~~~~~~py~~~il~~ll~~l~~~~~-~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~-~l~p~l~~~l~d~~~~~~ 746 (1880)
++.... .........++.++..+..... ...+..++..++.++..++...++.-....+ ..++.+++.+.+.++..+
T Consensus 358 La~~~~-~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~ 436 (457)
T d1xm9a1 358 MSRHPL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKA 436 (457)
T ss_dssp HHTSGG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHH
T ss_pred HhhChh-HHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHH
Confidence 986432 1112223445566666654321 1124567788888888887543322222222 468889998887666778
Q ss_pred HHHHHHHHHHHHhh
Q 000194 747 REVAVSTLGQVVQS 760 (1880)
Q Consensus 747 r~~Al~~Lg~l~~~ 760 (1880)
+++|..+|+.++.+
T Consensus 437 ~~aA~~~L~~L~~~ 450 (457)
T d1xm9a1 437 AEAARLLLSDMWSS 450 (457)
T ss_dssp HHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHcC
Confidence 89999999988643
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.96 E-value=0.00024 Score=67.27 Aligned_cols=79 Identities=15% Similarity=0.207 Sum_probs=59.0
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHH
Q 000194 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1880)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1880)
++.|+++.||..++.+|+. + ..+..++.|..+++|+++.||..|+..||++.. +... +.+..
T Consensus 30 ~l~d~~~~vR~~a~~~L~~---~----~~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~-------~~~~----~~L~~ 91 (111)
T d1te4a_ 30 SLSNEDWRIRGAAAWIIGN---F----QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------ERVR----AAMEK 91 (111)
T ss_dssp GGGCSCHHHHHHHHHHHGG---G----CSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------HHHH----HHHHH
T ss_pred HHcCCCHHHHHHHHHHHHh---c----chhhhHHHHHhhhccchhHHHHHHHHHHHHhCc-------cchH----HHHHH
Confidence 5789999999999999962 1 124568889999999999999999999998753 1122 22333
Q ss_pred HhcCCCChHhHHHHHHHH
Q 000194 649 LEQSSADNKCREESAKLL 666 (1880)
Q Consensus 649 l~~~~~~~~~r~~a~~~L 666 (1880)
+..+ +++.+|..|+..|
T Consensus 92 ll~d-~~~~vr~~A~~aL 108 (111)
T d1te4a_ 92 LAET-GTGFARKVAVNYL 108 (111)
T ss_dssp HTTS-CCTHHHHHHHHHG
T ss_pred HHcC-CCHHHHHHHHHHH
Confidence 4445 6788898888765
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.70 E-value=0.0011 Score=62.38 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=77.2
Q ss_pred cCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHh
Q 000194 571 ADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLE 650 (1880)
Q Consensus 571 ~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~ 650 (1880)
+|+++.||..++.+|+. +.+ +.++.|..+++|+++.||..|+.+||.+... ...|. + +..+.
T Consensus 2 ~D~~~~VR~~A~~aL~~---~~~-----~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~~---~~~~~----L---~~~l~ 63 (111)
T d1te4a_ 2 ADENKWVRRDVSTALSR---MGD-----EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE---RAVEP----L---IKLLE 63 (111)
T ss_dssp CSSCCCSSSSCCSSTTS---CSS-----TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH---HHHHH----H---HHHHH
T ss_pred CCcCHHHHHHHHHHHHH---hCH-----HHHHHHHHHHcCCCHHHHHHHHHHHHhcchh---hhHHH----H---Hhhhc
Confidence 68899999999999962 222 4567788899999999999999999976431 12222 2 22233
Q ss_pred cCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHH
Q 000194 651 QSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVG 713 (1880)
Q Consensus 651 ~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~ 713 (1880)
+ +++.+|..|++.|+.+.. +...+.+.+.+.++ ++.|+..++.+|.
T Consensus 64 d--~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~-----~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 64 D--DSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETG-----TGFARKVAVNYLE 109 (111)
T ss_dssp H--CCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSC-----CTHHHHHHHHHGG
T ss_pred c--chhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCC-----CHHHHHHHHHHHH
Confidence 3 578999999999988721 45566677777764 7888888777653
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.037 Score=62.67 Aligned_cols=110 Identities=15% Similarity=0.032 Sum_probs=78.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|..++.+..+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|++.+++.++.
T Consensus 170 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~- 235 (323)
T d1fcha_ 170 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN----------DYLLWNKLGATLANGNQ---SEEAVAAYRRALEL- 235 (323)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH-
T ss_pred cccccchhhHHHHHHHHHHhhhhcccccccccccc----------cccchhhhhhccccccc---chhHHHHHHHHHHH-
Confidence 35678888999999999999999999998877652 46777788888989995 68899999887642
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHS 1717 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~ 1717 (1880)
.+ ..++++..+|.-...+ ...++.+..|++|++++|+...+++.
T Consensus 236 ~p---------------------~~~~a~~~lg~~~~~~------g~~~~A~~~~~~al~l~p~~~~~~~~ 279 (323)
T d1fcha_ 236 QP---------------------GYIRSRYNLGISCINL------GAHREAVEHFLEALNMQRKSRGPRGE 279 (323)
T ss_dssp CT---------------------TCHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHHTC------
T ss_pred hh---------------------ccHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCcChhhhhh
Confidence 11 0133455555555443 23578999999999999987765553
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=94.72 E-value=0.0089 Score=63.61 Aligned_cols=18 Identities=33% Similarity=0.191 Sum_probs=12.3
Q ss_pred HhhhccCCChHHHHHHHH
Q 000194 507 VVLYLDDEDKATRKDAAL 524 (1880)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~ 524 (1880)
...|++|++.+||..|+.
T Consensus 47 ~~~~l~~p~~e~Ra~Aa~ 64 (233)
T d1lrva_ 47 AVQYLADPFWERRAIAVR 64 (233)
T ss_dssp GGGGTTCSSHHHHHHHHT
T ss_pred HHHHhcCCcHHHHHHHHh
Confidence 346778888888866553
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=94.20 E-value=0.0049 Score=65.70 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=15.2
Q ss_pred HhhhccCCChHHHHHHHHH
Q 000194 507 VVLYLDDEDKATRKDAALC 525 (1880)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~ 525 (1880)
+.++++|+++.||.+|+..
T Consensus 71 L~~Ll~D~d~~VR~~AA~~ 89 (233)
T d1lrva_ 71 LTPLIRDSDEVVRRAVAYR 89 (233)
T ss_dssp GGGGTTCSSHHHHHHHHTT
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 4577889999999988754
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.04 E-value=1.1 Score=49.74 Aligned_cols=189 Identities=13% Similarity=0.104 Sum_probs=119.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++...|..++.+..+.|+++.|...+.++...+|. .+...+..+..+...|+ ..+|++.++..+...
T Consensus 51 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~ 117 (323)
T d1fcha_ 51 KHMEAWQYLGTTQAENEQELLAISALRRCLELKPD----------NQTALMALAVSFTNESL---QRQACEILRDWLRYT 117 (323)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc----------ccccccccccccccccc---ccccccchhhHHHhc
Confidence 45778888899999999999999998888877652 35667777888888884 578888888765422
Q ss_pred cCCCccccc-----cccccccccC------------------------cchhhHHHHHHHHhhhHhhcCCCCCCCCHHHH
Q 000194 1647 SSCPVIQSA-----ASTSLTTATS------------------------TNVPLIARVYLKLGSWKRALPPGLDDESIPEI 1697 (1880)
Q Consensus 1647 ~~~~~~~~~-----~~~~~~~~~~------------------------~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i 1697 (1880)
......... .......... ......+.++..+|...... ...++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~------~~~~~A 191 (323)
T d1fcha_ 118 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS------GEYDKA 191 (323)
T ss_dssp TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT------TCHHHH
T ss_pred cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH------HHHhhh
Confidence 111000000 0000000000 00000123334444444332 357888
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHH
Q 000194 1698 IAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWF 1777 (1880)
Q Consensus 1698 ~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf 1777 (1880)
+..|+++++.+|++..+|...|....+. .-...|++.|-+++.+. + ........+-.+++
T Consensus 192 ~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~al~~~-----p-~~~~a~~~lg~~~~ 251 (323)
T d1fcha_ 192 VDCFTAALSVRPNDYLLWNKLGATLANG--------------NQSEEAVAAYRRALELQ-----P-GYIRSRYNLGISCI 251 (323)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHH
T ss_pred hcccccccccccccccchhhhhhccccc--------------ccchhHHHHHHHHHHHh-----h-ccHHHHHHHHHHHH
Confidence 9999999999999999999988765431 12357899999999875 2 23445667777888
Q ss_pred hcCCcHHHHHHHHhccc
Q 000194 1778 NHGATEEVQIALQKGFA 1794 (1880)
Q Consensus 1778 ~~g~~~~v~~~~~~~~~ 1794 (1880)
..|..++..+.+++.+.
T Consensus 252 ~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 252 NLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 88888777666666554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.69 E-value=0.55 Score=43.38 Aligned_cols=112 Identities=10% Similarity=0.010 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCC
Q 000194 1570 ETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSC 1649 (1880)
Q Consensus 1570 ~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~ 1649 (1880)
.....-++.+-+.|+++.|.....++...+|. .+.+....+..+...|+ ..+|+..++..+.--...
T Consensus 4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~ 70 (117)
T d1elwa_ 4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH----------NHVLYSNRSAAYAKKGD---YQKAYEDGCKTVDLKPDW 70 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----------chhhhhccccccccccc---ccccchhhhhHHHhccch
Confidence 34456688899999999999999999887763 47788888999999995 678999998876431100
Q ss_pred CccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000194 1650 PVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1880)
Q Consensus 1650 ~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1880)
...-..++.++..+|+ .++.+..|+++++++|+...+|..++...
T Consensus 71 ---------------~~~~~~~g~~~~~~~~-------------~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 71 ---------------GKGYSRKAAALEFLNR-------------FEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp ---------------HHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ---------------hhHHHHHHHHHHHccC-------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 0111224445544444 57889999999999999999999887653
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=93.47 E-value=0.8 Score=51.18 Aligned_cols=135 Identities=16% Similarity=0.154 Sum_probs=87.9
Q ss_pred HHHHHHhhhcC----CChhhhhhHHHHHhHhhccccC---c-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhh
Q 000194 70 LYDRISGLLES----NDAAENLGALRAIDELIDVALG---E-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA 141 (1880)
Q Consensus 70 l~~~i~~l~~s----~~~~~r~~~i~ai~~Li~~~~~---~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~ 141 (1880)
+.+.+++++++ .++..+..++++++.|+..... . ....+..+.+++..... ..|.+-+-.+-++||.+-..
T Consensus 124 ~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~LkaLGN~g~p 202 (336)
T d1lsha1 124 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSD-RAKEEEIVLALKALGNAGQP 202 (336)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHhccCCH
Confidence 34556666665 4667788899999999765211 1 23456677788887775 55777778889999986432
Q ss_pred CCCCchhHHHHHHHHHHhhhcC------CCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHH
Q 000194 142 GGAMTADEVEFQVKMALDWLRG------DRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAV 215 (1880)
Q Consensus 142 ~g~~~~~~v~~~~~~~~~~l~~------~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~ 215 (1880)
+. ++.+..++.+ +.+...|.+|+.+++.++...|....+.+-+|+- + .+.+++||-+|.
T Consensus 203 ------~~----i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~~~l~~i~~---n--~~e~~EvRiaA~ 267 (336)
T d1lsha1 203 ------NS----IKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFL---N--VAIKSELRIRSC 267 (336)
T ss_dssp ------GG----HHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHHHHH---C--TTSCHHHHHHHH
T ss_pred ------hH----HHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHc---C--CCCChHHHHHHH
Confidence 11 4555556543 2245689999999998887766544333322221 1 344588999999
Q ss_pred HHHHH
Q 000194 216 EALRA 220 (1880)
Q Consensus 216 ~al~~ 220 (1880)
.++-.
T Consensus 268 ~~lm~ 272 (336)
T d1lsha1 268 IVFFE 272 (336)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87643
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.69 E-value=2.5 Score=46.67 Aligned_cols=139 Identities=8% Similarity=0.047 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhcCC-hhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1569 VETWLKFASLCRKSGR-ISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~-~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
...|...+.+..+.|+ ++.|...+.++...+|. .+.+..-.+.++-..|+ ..+|+..+++.+..-.
T Consensus 77 ~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~----------~~~a~~~~~~~~~~l~~---~~eAl~~~~kal~~dp 143 (315)
T d2h6fa1 77 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK----------NYQVWHHRRVLVEWLRD---PSQELEFIADILNQDA 143 (315)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh----------hhhHHHHHhHHHHhhcc---HHHHHHHHhhhhhhhh
Confidence 4445555555556554 78888888888777653 34555555666656675 3679998888765211
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1880)
.. ..--..++.++..+|+| ++.++.|.+|++++|.+..+|+..|....+.-.
T Consensus 144 ~n---------------~~a~~~~~~~~~~~~~~-------------~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~ 195 (315)
T d2h6fa1 144 KN---------------YHAWQHRQWVIQEFKLW-------------DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 195 (315)
T ss_dssp TC---------------HHHHHHHHHHHHHHTCC-------------TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred cc---------------hHHHHHHHHHHHHHHhh-------------HHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc
Confidence 00 00011245555555554 457789999999999999999988865443211
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
.........|++.|.++|.+.
T Consensus 196 --------~~~~~~~~~ai~~~~~al~~~ 216 (315)
T d2h6fa1 196 --------YNDRAVLEREVQYTLEMIKLV 216 (315)
T ss_dssp --------SCSHHHHHHHHHHHHHHHHHS
T ss_pred --------cchhhhhHHhHHHHHHHHHhC
Confidence 112345678999999999885
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.54 E-value=1.2 Score=47.69 Aligned_cols=191 Identities=17% Similarity=0.197 Sum_probs=123.5
Q ss_pred HhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHH------HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHH
Q 000194 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR------RHLIQLLTYLEQSSADNKCREESAKLLGCLIR 671 (1880)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~------~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~ 671 (1880)
.+.+..|...+..-+++.|..+..+++.+....++.=.|... .++..++...+ .++..-.+..+|-+.++
T Consensus 68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye----~~eiAl~~G~mLREcik 143 (330)
T d1upka_ 68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE----SPEIALNCGIMLRECIR 143 (330)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG----STTTHHHHHHHHHHHHT
T ss_pred hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC----CcchhhhhhHHHHHHHh
Confidence 356888888888889999999999999998877665444221 22333333322 23333344444444443
Q ss_pred hCc--ccc--cCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhc----CCchhhhHHhHHHHHHHHHhcCCc
Q 000194 672 NCE--RLI--RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG----GFGMRQYISELMPLIVEALLDGAA 743 (1880)
Q Consensus 672 ~~~--~~~--~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~----g~~~~~~~~~l~p~l~~~l~d~~~ 743 (1880)
+-. ..+ .+. +..+...+.. ++-++.+.++.++.++-..- .+.+..+++.++..+-+.|+. .+
T Consensus 144 ~e~lak~iL~s~~----f~~fF~yv~~-----~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s-~N 213 (330)
T d1upka_ 144 HEPLAKIILWSEQ----FYDFFRYVEM-----STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS-EN 213 (330)
T ss_dssp SHHHHHHHHHSGG----GGHHHHHTTC-----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC-SS
T ss_pred hHHHHHHHHccHH----HHHHHHHHcC-----CchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcC-Cc
Confidence 210 000 011 1122222333 37888889999998876433 345666778888888766654 45
Q ss_pred hhhHHHHHHHHHHHHhhcC--cccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcc
Q 000194 744 VTKREVAVSTLGQVVQSTG--YVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA 803 (1880)
Q Consensus 744 ~~~r~~Al~~Lg~l~~~~~--~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lga 803 (1880)
--.|..+++-||.+...-. .++.-|..-|+-|..++.+|++ .+..++.+|++++-...|
T Consensus 214 YVtrRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd-~sk~Iq~EAFhVFKvFVA 274 (330)
T d1upka_ 214 YVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRD-KSRNIQFEAFHVFKVFVA 274 (330)
T ss_dssp HHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcC-chhhHHHHhhhHhhhhhc
Confidence 6788899999999884433 2345666678999999999985 489999999999877654
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=91.72 E-value=8.9 Score=42.17 Aligned_cols=160 Identities=13% Similarity=0.017 Sum_probs=86.5
Q ss_pred CChHHHHHHHHHHHHHhhh----CCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHH
Q 000194 123 RDREILVLASKVLGHLARA----GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDA 198 (1880)
Q Consensus 123 ~d~~v~~~aa~~l~~L~~~----~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~ 198 (1880)
+++.+...+.-++|.|+.. ...-..++++.....+.+... ..++..+..++.+|+-+. .|. +++.
T Consensus 139 ~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~LkaLGN~g--~p~--------~i~~ 207 (336)
T d1lsha1 139 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSD-RAKEEEIVLALKALGNAG--QPN--------SIKK 207 (336)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHT--CGG--------GHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHhccC--CHh--------HHHH
Confidence 3567778888899999874 122334455544444433332 334445566666666543 232 2333
Q ss_pred HHHHhc-------CCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc-
Q 000194 199 IWVALR-------DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN- 270 (1880)
Q Consensus 199 i~~~l~-------D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~- 270 (1880)
+...+. +....||.+|..|++.+.. .++. .....+++...+ ...+.++|-+|..++ .++
T Consensus 208 l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~----~~p~---~v~~~l~~i~~n---~~e~~EvRiaA~~~l---m~t~ 274 (336)
T d1lsha1 208 IQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK----RDPR---KVQEIVLPIFLN---VAIKSELRIRSCIVF---FESK 274 (336)
T ss_dssp HHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG----TCHH---HHHHHHHHHHHC---TTSCHHHHHHHHHHH---HHTC
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHHhhh----cCcH---HHHHHHHHHHcC---CCCChHHHHHHHHHH---HhcC
Confidence 333332 3457899999999985422 2221 112222222222 222468888877665 333
Q ss_pred chhhhHHHHHHHHHHHHHHh-hcchhHHHHHHHHHhHhHhhhCh
Q 000194 271 TGEFMMSRYREVAEIVLRYL-EHRDRLVRLSITSLLPRIAHFLR 313 (1880)
Q Consensus 271 ~~~~~~~~~~~i~~~ll~~~-~~~~~~Vr~~~~~~i~~la~~~~ 313 (1880)
.... ++..+...+ .+++..|+..+...|-.++....
T Consensus 275 P~~~-------~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~ 311 (336)
T d1lsha1 275 PSVA-------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN 311 (336)
T ss_dssp CCHH-------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred CCHH-------HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCC
Confidence 2211 222233323 56788888888888888887543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.21 E-value=4.3 Score=44.36 Aligned_cols=206 Identities=13% Similarity=0.118 Sum_probs=124.1
Q ss_pred cHHHHHHHHHHHHhcCC--------------hhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHH
Q 000194 1568 DVETWLKFASLCRKSGR--------------ISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRK 1633 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~--------------~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~ 1633 (1880)
..+.|+++++...++|+ .+.|...+.++....+. ..+.+-+.++.+.-.+|+ ..
T Consensus 49 ~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p---------~~~~l~~~ya~~~~~~~~---~~ 116 (308)
T d2onda1 49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK---------KNMLLYFAYADYEESRMK---YE 116 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT---------TCHHHHHHHHHHHHHTTC---HH
T ss_pred CHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCC---------CCHHHHHHHHHHHHhccc---HH
Confidence 46789999987765443 35556666665542111 235677888888888885 46
Q ss_pred HHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchH
Q 000194 1634 EAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGK 1713 (1880)
Q Consensus 1634 ~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k 1713 (1880)
.|...++..+.... .+ ...++..+++..... ...+...+.|..|++.+|....
T Consensus 117 ~a~~i~~~~l~~~~------------------~~---~~~~w~~~~~~~~~~------~~~~~ar~i~~~al~~~~~~~~ 169 (308)
T d2onda1 117 KVHSIYNRLLAIED------------------ID---PTLVYIQYMKFARRA------EGIKSGRMIFKKAREDARTRHH 169 (308)
T ss_dssp HHHHHHHHHHTSSS------------------SC---THHHHHHHHHHHHHH------HCHHHHHHHHHHHHTSTTCCTH
T ss_pred HHHHHHHHHHHHhc------------------CC---hHHHHHHHHHHHHHc------CChHHHHHHHHHHHHhCCCcHH
Confidence 77777776553110 01 123355555555443 3467888999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcc
Q 000194 1714 AWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGF 1793 (1880)
Q Consensus 1714 ~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~ 1793 (1880)
.|..+|..-.... .....|..-|-+++... ..+..-..+.+.+....|+...+...+++++
T Consensus 170 ~~~~~a~~e~~~~-------------~~~~~a~~i~e~~l~~~------p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai 230 (308)
T d2onda1 170 VYVTAALMEYYCS-------------KDKSVAFKIFELGLKKY------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHHHHHHHTS-------------CCHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-------------cCHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 9988886532211 12234566666666653 2235556777777778888877778888887
Q ss_pred cCCChh------hHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCchh
Q 000194 1794 AHVNIN------TWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQA 1837 (1880)
Q Consensus 1794 ~~ip~~------~wl~~ipQLiaRi~~~~~~v~~~l~~lL~~i~~~hPqa 1837 (1880)
...|.. .|..++- .=.+.+.. ..+.++..|..+.+|..
T Consensus 231 ~~~~~~~~~~~~iw~~~~~-fE~~~G~~-----~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 231 TSGSLPPEKSGEIWARFLA-FESNIGDL-----ASILKVEKRRFTAFREE 274 (308)
T ss_dssp HSSSSCGGGCHHHHHHHHH-HHHHHSCH-----HHHHHHHHHHHHHTTTT
T ss_pred HhCCCChHHHHHHHHHHHH-HHHHcCCH-----HHHHHHHHHHHHHCccc
Confidence 765521 3544432 11222221 22445556666666654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.11 E-value=0.81 Score=42.57 Aligned_cols=113 Identities=8% Similarity=-0.046 Sum_probs=76.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCcccc
Q 000194 1575 FASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQS 1654 (1880)
Q Consensus 1575 ~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~ 1654 (1880)
.++..-+.+.++.|...-.+++..+|. .+.+.+-++..+-..++..+..+|+..+++.+..
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~----------~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~--------- 65 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSV----------SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--------- 65 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCC----------CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT---------
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc---------
Confidence 445556677888888888888877653 4788888888887655443456799999886531
Q ss_pred ccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1655 AASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1655 ~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
......+.++..+|.=..++ ...++.+++|+++++++|++.++..--+....
T Consensus 66 -----------~~~~~~~~~~~~Lg~~y~~~------g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 66 -----------GSKEEQRDYVFYLAVGNYRL------KEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp -----------SCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -----------cCCchHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 01122344555555444443 24678999999999999999988876554433
|
| >d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Exportin HEAT-like repeat domain: Exportin-1 (Xpo1, Crm1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.04 E-value=11 Score=40.72 Aligned_cols=166 Identities=14% Similarity=0.167 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhhcCc---cchhchHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhh
Q 000194 172 AAVLILKEMAENAST---VFNVHVAEFVDAIWVALRDPTLAVRERA-VEALRACLRVIEKRETRWRVQWYYRMFEATQDG 247 (1880)
Q Consensus 172 aA~~~l~~la~~~p~---~l~~~l~~i~~~i~~~l~D~~~~VR~aA-~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~ 247 (1880)
.-+.++......+++ .....++.+++.++.--+...|..|++. ...+..+..-+...-....+..+..+++.+..-
T Consensus 48 eiLkLi~t~i~~~~d~~~v~~~~i~pl~~~vL~DY~~~~p~~R~~eVL~l~~~ii~kl~~~~~~~v~~I~~~VFe~Tl~M 127 (321)
T d1w9ca_ 48 ETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNM 127 (321)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCchhhccHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 334555555555554 2344678888888877777777777653 333333333333222334566778888888776
Q ss_pred ccCC--CChhHHHHHHHHHHHHHHcchhhh----HHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhh---C---hhh
Q 000194 248 LGRN--APVHSIHGSLLAVGELLRNTGEFM----MSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHF---L---RDR 315 (1880)
Q Consensus 248 l~~~--~~~~~~~~al~~l~~ll~~~~~~~----~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~---~---~~~ 315 (1880)
+.++ +-++.|..-...|..+...+-+.+ .+.+..+++.+.-..+|.++.|....+.++-.+... . ...
T Consensus 128 I~~df~~yPehR~~ff~LL~~i~~~cf~~ll~lp~~qf~~vidsi~wa~kH~~~~V~~~gL~~l~~ll~n~~~~~~~~~~ 207 (321)
T d1w9ca_ 128 INKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQS 207 (321)
T ss_dssp HSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HhccchhChHHHHHHHHHHHHHHHHCHHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhChHHHHH
Confidence 6553 236889888889999988665433 257888899999999999999999988887765531 1 134
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC
Q 000194 316 FVTNYLKICMNHILTVLRIPAE 337 (1880)
Q Consensus 316 f~~~yl~~~~~~Ll~~L~~~~~ 337 (1880)
|...|+-+++..++..+.+...
T Consensus 208 F~~~y~~~il~~if~vltD~~H 229 (321)
T d1w9ca_ 208 FYQTYFCDILQHIFSVVTDTSH 229 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHHChhH
Confidence 7777777888888887765543
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.92 E-value=8.1 Score=41.11 Aligned_cols=192 Identities=15% Similarity=0.163 Sum_probs=111.2
Q ss_pred HHHhhcccCCChHHHHHHHHHHHHHhhh-CCCCc--hhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC---cc
Q 000194 114 YMRTVFEVKRDREILVLASKVLGHLARA-GGAMT--ADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS---TV 187 (1880)
Q Consensus 114 ~L~~~l~~~~d~~v~~~aa~~l~~L~~~-~g~~~--~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p---~~ 187 (1880)
.|-..+| .-|.+.++.++.++..+.+. .|+.. .+|+...-+-....+++..+...-..+=.+|++.+.+-+ -.
T Consensus 73 ~Li~~L~-~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLREcik~e~lak~i 151 (330)
T d1upka_ 73 TLVADLQ-LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKII 151 (330)
T ss_dssp HHHHTGG-GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHhCC-CCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHHHHhhHHHHHHH
Confidence 4445554 44789999999999988875 23332 345444322222223332222222333345666555421 11
Q ss_pred ch-hchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHH
Q 000194 188 FN-VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGE 266 (1880)
Q Consensus 188 l~-~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ 266 (1880)
+. +++-.++ .-+.-|+-.|-..|...++.++.--..-...+-...|..++.....-|.++ ...++.-|+..||+
T Consensus 152 L~s~~f~~fF----~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~-NYVtrRqSlKLLge 226 (330)
T d1upka_ 152 LWSEQFYDFF----RYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSLKLLGE 226 (330)
T ss_dssp HHSGGGGHHH----HHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHHHHHHH
T ss_pred HccHHHHHHH----HHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCC-chHHHHHHHHHHHH
Confidence 21 3444444 445667888855555555554431110011122334556666665545555 48889999999999
Q ss_pred HHH--cchhhhHHHHH--HHHHHHHHHhhcchhHHHHHHHHHhHhHhhh
Q 000194 267 LLR--NTGEFMMSRYR--EVAEIVLRYLEHRDRLVRLSITSLLPRIAHF 311 (1880)
Q Consensus 267 ll~--~~~~~~~~~~~--~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~ 311 (1880)
++. .....|..|+. +-+..++.++++++..||-.+.++.....+.
T Consensus 227 lLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVAN 275 (330)
T d1upka_ 227 LLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 275 (330)
T ss_dssp HHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcC
Confidence 986 44466777664 3456777888999999999999999877653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.78 E-value=5.3 Score=43.53 Aligned_cols=118 Identities=11% Similarity=0.173 Sum_probs=86.7
Q ss_pred CCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 000194 1564 PPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643 (1880)
Q Consensus 1564 ~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~ 1643 (1880)
.|.+....|++++++.++.|.++.|...+.++....|. .+.+.+..+...|.... ....|...++..+
T Consensus 129 ~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~----------~~~~~~~~a~~e~~~~~--~~~~a~~i~e~~l 196 (308)
T d2onda1 129 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART----------RHHVYVTAALMEYYCSK--DKSVAFKIFELGL 196 (308)
T ss_dssp SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC----------CTHHHHHHHHHHHHTSC--CHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHhcc--CHHHHHHHHHHHH
Confidence 34455678999999999999999999999998876542 35677788888887543 2577888888877
Q ss_pred HHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc----chHHHHHHH
Q 000194 1644 MELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK----WGKAWHSWA 1719 (1880)
Q Consensus 1644 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~----~~k~w~~wA 1719 (1880)
..... ....+..++++.... +..+.+...|++|++.++. ..+.|..|+
T Consensus 197 ~~~p~----------------------~~~~w~~y~~~~~~~------g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~ 248 (308)
T d2onda1 197 KKYGD----------------------IPEYVLAYIDYLSHL------NEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 248 (308)
T ss_dssp HHHTT----------------------CHHHHHHHHHHHHTT------CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred Hhhhh----------------------hHHHHHHHHHHHHHc------CChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 54321 123456667776543 4578899999999987653 456899998
Q ss_pred HH
Q 000194 1720 LF 1721 (1880)
Q Consensus 1720 ~~ 1721 (1880)
.|
T Consensus 249 ~f 250 (308)
T d2onda1 249 AF 250 (308)
T ss_dssp HH
T ss_pred HH
Confidence 87
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.54 E-value=0.99 Score=44.16 Aligned_cols=91 Identities=12% Similarity=0.047 Sum_probs=61.9
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hh----hhhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-EL----DVQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~----~~~~~~~~~ 1364 (1880)
.-|....+.+.|.+|+.+++..+.. +++.......|..+|.++|+.+.|.-.++.+-. +. .....+..|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~ 88 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIEL------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHhhhcccc------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 3466778888999999888776643 244566777888888888888888777764422 11 112233447
Q ss_pred HHhcCHHHHHHHHHHHHhccCC
Q 000194 1365 EKLQRWDDALKAYTNKASQASN 1386 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~ 1386 (1880)
..+|+|++|+.+|++.+...++
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~p~ 110 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVKPH 110 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHcCCHHHHHHHHHHHHHcCCC
Confidence 7888888888888887765443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.52 E-value=7.7 Score=41.67 Aligned_cols=163 Identities=7% Similarity=-0.067 Sum_probs=88.4
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh-----------hhhh
Q 000194 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL-----------DVQL 1359 (1880)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~-----------~~~~ 1359 (1880)
.|.+=..++.|.+|+-+.+....-............+...+..+|.++|+++.+....+.+-... ....
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 35555567778888877665443111000001112456777889999999998876665332110 0111
Q ss_pred cHHHHHH-hcCHHHHHHHHHHHHhc---cCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc--CCCChHHH---HhHH
Q 000194 1360 KESWYEK-LQRWDDALKAYTNKASQ---ASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW--TPAEPAAR---LEMA 1430 (1880)
Q Consensus 1360 ~~~~~e~-lg~W~~Al~~y~~~~~~---~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~---~~~~ 1430 (1880)
.+..|+. +|+|++|++.|++.+.. ..++.........+..++..+|+|+.-.+..+..- ....+..+ ....
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 2223544 79999999999987642 12222123345667888999999987766654311 01111111 1111
Q ss_pred HHHHHHHHHcCChhhHHHHHhhc
Q 000194 1431 PMAANAAWNMGEWDQMAEYVSRL 1453 (1880)
Q Consensus 1431 ~~~a~aaw~l~~Wd~~~~~~~~~ 1453 (1880)
.....+.-..|+++.........
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~ 225 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEG 225 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHHHHhccHHHHHHHHHHH
Confidence 12233445577888777666544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=89.40 E-value=0.87 Score=41.54 Aligned_cols=79 Identities=15% Similarity=-0.039 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHH
Q 000194 1616 MYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIP 1695 (1880)
Q Consensus 1616 ~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~ 1695 (1880)
.+..+..+..+|+ -.+|+..+++.+..-. ..+.++..+|.+.... ...+
T Consensus 19 ~~~~g~~~~~~g~---~~~A~~~~~~al~~~p----------------------~~~~a~~~lg~~~~~~------~~~~ 67 (112)
T d1hxia_ 19 PMEEGLSMLKLAN---LAEAALAFEAVCQKEP----------------------EREEAWRSLGLTQAEN------EKDG 67 (112)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHHST----------------------TCHHHHHHHHHHHHHT------TCHH
T ss_pred HHHHHHHHHHHhh---hHHHHHHHhhhccccc----------------------ccchhhhhhhhhhhhh------hhHH
Confidence 4678888999995 6899999998875311 1256788888887765 3578
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000194 1696 EIIAAYRNATQCATKWGKAWHSWALFNTAV 1725 (1880)
Q Consensus 1696 ~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~ 1725 (1880)
+.+..|++|++++|+...+|..+|..+...
T Consensus 68 ~A~~~~~~al~~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 68 LAIIALNHARMLDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhhcccccccccccccccchHHHHHHHHHC
Confidence 999999999999999999999999887764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=89.09 E-value=1.8 Score=45.87 Aligned_cols=103 Identities=10% Similarity=-0.019 Sum_probs=72.9
Q ss_pred hhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHH
Q 000194 1669 PLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTG 1748 (1880)
Q Consensus 1669 ~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~ 1748 (1880)
...|++++.+|.-.... ...++.+..|++|++++|++..+|+.+|....+. .-...|++.
T Consensus 34 ~~~a~~~~~~G~~y~~~------g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~--------------g~~~~A~~~ 93 (259)
T d1xnfa_ 34 DERAQLLYERGVLYDSL------GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA--------------GNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT--------------TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC------CCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHH--------------HHHHHhhhh
Confidence 44677788888766554 3578999999999999999999999999875541 123368888
Q ss_pred HHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1749 YFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1749 y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
|-+++.+.+ . .......+-.+++..|...+..+.+++.+..-|
T Consensus 94 ~~~al~~~p-----~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p 136 (259)
T d1xnfa_ 94 FDSVLELDP-----T-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 136 (259)
T ss_dssp HHHHHHHCT-----T-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHh-----h-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc
Confidence 888888752 2 233455666677777877766666666654444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.60 E-value=1.3 Score=43.15 Aligned_cols=85 Identities=9% Similarity=-0.020 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHH
Q 000194 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRL 1772 (1880)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~Rl 1772 (1880)
..++.+..|++|++++|++..+|+.+|..+... .-...|+..|-++|.+. ....+...++
T Consensus 25 ~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------~~~~~A~~~~~kal~~~------p~~~~a~~~~ 84 (159)
T d1a17a_ 25 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT--------------ECYGYALGDATRAIELD------KKYIKGYYRR 84 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHHC------TTCHHHHHHH
T ss_pred CHHHHHHHhhhccccchhhhhhhhhhHHHHHhc--------------cccchHHHHHHHHHHHc------ccchHHHHHH
Confidence 457889999999999999999999999876652 13347999999999985 3456778888
Q ss_pred HHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1773 LTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1773 LtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
-.+++..|...+....+++.+..-|
T Consensus 85 g~~~~~~g~~~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 85 AASNMALGKFRAALRDYETVVKVKP 109 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 9999999998888777777765433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.42 E-value=1.1 Score=41.16 Aligned_cols=87 Identities=14% Similarity=0.036 Sum_probs=46.4
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHHH
Q 000194 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWYE 1365 (1880)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~e 1365 (1880)
-|..+.+-|.|..|+-+.+..+... +.....+..+..+|..+|+.+.+...+..+... +. .-..+..|.
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC------CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence 4666777788888887776655422 333455555666666666666555555432210 00 111222355
Q ss_pred HhcCHHHHHHHHHHHHhc
Q 000194 1366 KLQRWDDALKAYTNKASQ 1383 (1880)
Q Consensus 1366 ~lg~W~~Al~~y~~~~~~ 1383 (1880)
.+|+|++|+.+|++.++.
T Consensus 83 ~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 566666666666655543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=87.06 E-value=4.4 Score=42.53 Aligned_cols=113 Identities=13% Similarity=-0.026 Sum_probs=74.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
+....|...+.+-++.|+++.|.....+++.++|. .+.+.+..+.+.-..|+ ..+|+..+++.+..-
T Consensus 35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~~~ 101 (259)
T d1xnfa_ 35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD----------MPEVFNYLGIYLTQAGN---FDAAYEAFDSVLELD 101 (259)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC----------CHHHHhhhchHHHHHHH---HHHhhhhhhHHHHHH
Confidence 34677778888888889999999988888887653 46666777777777774 578888888766421
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWAL 1720 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~ 1720 (1880)
... ..--..++.+|..+|+ .++.++.|+.+++.+|+....+...+.
T Consensus 102 p~~---------------~~a~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~~~~~~~ 147 (259)
T d1xnfa_ 102 PTY---------------NYAHLNRGIALYYGGR-------------DKLAQDDLLAFYQDDPNDPFRSLWLYL 147 (259)
T ss_dssp TTC---------------THHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhh---------------hhhHHHHHHHHHHHhh-------------HHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 100 0001123444444444 456778888888888877665544443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.60 E-value=0.48 Score=45.85 Aligned_cols=81 Identities=15% Similarity=0.018 Sum_probs=59.0
Q ss_pred hHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHH
Q 000194 1670 LIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGY 1749 (1880)
Q Consensus 1670 l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y 1749 (1880)
.++.+++.+++|..... .....++.+..|++|++++|++..+|+.+|..+.++-... ++.....++...|++.|
T Consensus 36 ~~g~~l~~~~~~~~~~e---~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~---~~~~~~~~~~~~A~~~~ 109 (145)
T d1zu2a1 36 RWGGVLLELSQFHSISD---AKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT---PDETEAKHNFDLATQFF 109 (145)
T ss_dssp HHHHHHHHHHHHSCHHH---HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhH---HHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccch---hhHHHHHHhHHHhhhhh
Confidence 46788888888753211 0134678999999999999999999999999887754321 11112335678899999
Q ss_pred HHHHhhc
Q 000194 1750 FHSIACA 1756 (1880)
Q Consensus 1750 ~~si~~~ 1756 (1880)
-++|.+.
T Consensus 110 ~kal~l~ 116 (145)
T d1zu2a1 110 QQAVDEQ 116 (145)
T ss_dssp HHHHHHC
T ss_pred hcccccC
Confidence 9999985
|
| >d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: BC3264-like domain: Hypothetical protein EF3068 species: Enterococcus faecalis [TaxId: 1351]
Probab=85.99 E-value=5.4 Score=40.73 Aligned_cols=150 Identities=11% Similarity=-0.018 Sum_probs=92.0
Q ss_pred HHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChH
Q 000194 47 LRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDRE 126 (1880)
Q Consensus 47 l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~ 126 (1880)
++.++....++....... ++...+.++.+++.-..|..|+..+....... . ....+++...++..+.=+
T Consensus 32 ~r~laK~~~k~~~~~~~~----~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~-~------~~~l~~~~~~~~~~~~Wd 100 (213)
T d2b6ca1 32 RQALSKQLLKESHTWPKE----KLCQEIEAYYQKTEREYQYVAIDLALQNVQRF-S------LEEVVAFKAYVPQKAWWD 100 (213)
T ss_dssp HHHHTHHHHHHHTTSCHH----HHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGC-C------HHHHHHGGGGTTTTCSHH
T ss_pred HHHHHHHHHHhcCCCCHH----HHHHHHHHHHcCchHHHHHHHHHHHHHHHhcc-C------HHHHHHHHHHHccCccHH
Confidence 444444444444432222 23444456777777777887777766665432 1 123455666666554557
Q ss_pred HHHHHHHHHH-HHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcC
Q 000194 127 ILVLASKVLG-HLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRD 205 (1880)
Q Consensus 127 v~~~aa~~l~-~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D 205 (1880)
+.+..|..++ .+...+ .+ ..+.+.+|..++..|.+|.|.+..+. -.-......++..+-..+.|
T Consensus 101 ~vD~~~~~i~~~~~~~~----~~----~~~~l~~w~~s~~~w~rR~aiv~~l~-------~~~~~~~~~~~~~~~~~~~d 165 (213)
T d2b6ca1 101 SVDAWRKFFGSWVALHL----TE----LPTIFALFYGAENFWNRRVALNLQLM-------LKEKTNQDLLKKAIIYDRTT 165 (213)
T ss_dssp HHHHHHHHHHHHHHHSG----GG----HHHHHHHHTTCSSHHHHHHHHHTTTT-------CGGGCCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhh----hh----HHHHHHHHHhCCCHHHHHHHHHHHHH-------HHHcccHHHHHHHHHHhCCC
Confidence 7776666554 444431 11 23456789988888988877544332 22223556677777788899
Q ss_pred CchhHHHHHHHHHHHHH
Q 000194 206 PTLAVRERAVEALRACL 222 (1880)
Q Consensus 206 ~~~~VR~aA~~al~~~~ 222 (1880)
++..||.|...+|+.+.
T Consensus 166 ~e~~i~kAigW~Lre~~ 182 (213)
T d2b6ca1 166 EEFFIQKAIGWSLRQYS 182 (213)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99999999999998764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=85.82 E-value=1.3 Score=40.34 Aligned_cols=79 Identities=15% Similarity=0.102 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHH
Q 000194 1694 IPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLL 1773 (1880)
Q Consensus 1694 ~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlL 1773 (1880)
.++.+..|+++++.+|+...+|+.+|....+. .-...|+..|-+++.+. ....+....+-
T Consensus 32 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--------------~~~~~A~~~~~~al~~~------p~~~~a~~~la 91 (112)
T d1hxia_ 32 LAEAALAFEAVCQKEPEREEAWRSLGLTQAEN--------------EKDGLAIIALNHARMLD------PKDIAVHAALA 91 (112)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHHC------TTCHHHHHHHH
T ss_pred hHHHHHHHhhhcccccccchhhhhhhhhhhhh--------------hhHHHhhcccccccccc------cccccchHHHH
Confidence 57788999999999999999999999876541 12348999999999985 23455666677
Q ss_pred HHHHhcCCcHHHHHHHHhc
Q 000194 1774 TLWFNHGATEEVQIALQKG 1792 (1880)
Q Consensus 1774 tLwf~~g~~~~v~~~~~~~ 1792 (1880)
.+....|+..+-.+.+++.
T Consensus 92 ~~y~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 92 VSHTNEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 7777777766655555543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.72 E-value=3.9 Score=35.56 Aligned_cols=87 Identities=7% Similarity=-0.020 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCC
Q 000194 1613 PQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDE 1692 (1880)
Q Consensus 1613 ~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~ 1692 (1880)
+.-.++..+..+.+|+ -.+|+..+++-+........ .....+.++..+|.=..++ .
T Consensus 5 addc~~lG~~~~~~g~---y~~A~~~~~~Al~~~~~~~~---------------~~~~~~~~l~~Lg~~~~~~------g 60 (95)
T d1tjca_ 5 AEDSFELGKVAYTEAD---YYHTELWMEQALRQLDEGEI---------------STIDKVSVLDYLSYAVYQQ------G 60 (95)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTTCC---------------CSSCHHHHHHHHHHHHHHT------T
T ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHhhhhc---------------cCccHHHHHHHHhhHHHhc------C
Confidence 3445788889999995 68899999887654432111 1122445555555544443 2
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
..++.+.+|++|++++|++.+++...+.+..
T Consensus 61 ~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~ 91 (95)
T d1tjca_ 61 DLDKALLLTKKLLELDPEHQRANGNLKYFEY 91 (95)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 4688999999999999999999999887644
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.63 E-value=6.7 Score=42.88 Aligned_cols=134 Identities=10% Similarity=-0.041 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
.+.+-.+..+.++.++++.|.....++..++|. +..+-.-.+.++...|.. -.+|+..++..+..-..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~----------~~~a~~~r~~~l~~l~~~--~~eal~~~~~al~~~p~ 110 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA----------NYTVWHFRRVLLKSLQKD--LHEEMNYITAIIEEQPK 110 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC----------ChHHHHHHHHHHHHhCcC--HHHHHHHHHHHHHHHHh
Confidence 667777888899999999999999999988763 456666677777776642 47899988887653110
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1880)
. ..--..++.++..+|++ ++.+..|.+|++++|+++.+|.+.|....++-.
T Consensus 111 ~---------------~~a~~~~~~~~~~l~~~-------------~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~- 161 (315)
T d2h6fa1 111 N---------------YQVWHHRRVLVEWLRDP-------------SQELEFIADILNQDAKNYHAWQHRQWVIQEFKL- 161 (315)
T ss_dssp C---------------HHHHHHHHHHHHHHTCC-------------TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-
T ss_pred h---------------hhHHHHHhHHHHhhccH-------------HHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHh-
Confidence 0 00012234455555443 467899999999999999999999877665311
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
...|+..|-++|.+.
T Consensus 162 -------------~~~Al~~~~~al~~~ 176 (315)
T d2h6fa1 162 -------------WDNELQYVDQLLKED 176 (315)
T ss_dssp -------------CTTHHHHHHHHHHHC
T ss_pred -------------hHHHHHHHHHHHHHC
Confidence 114788888888875
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.57 E-value=2 Score=40.01 Aligned_cols=99 Identities=13% Similarity=0.075 Sum_probs=68.4
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHH
Q 000194 1619 YLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEII 1698 (1880)
Q Consensus 1619 ~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~ 1698 (1880)
....++..|+ -.+|+..+++.+.--.. ...--..+|.||..+|+| ++.+
T Consensus 10 ~G~~~~~~~~---y~~Ai~~y~~al~~~p~---------------~~~~~~~~a~~~~~~~~~-------------~~A~ 58 (128)
T d1elra_ 10 LGNDAYKKKD---FDTALKHYDKAKELDPT---------------NMTYITNQAAVYFEKGDY-------------NKCR 58 (128)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHTCH-------------HHHH
T ss_pred HHHHHHHcCC---HHHHHHHHHHHHHhCcc---------------cHHHHHhHHHHHHHcCch-------------HHHH
Confidence 3345666774 68899999887753110 001122356666666666 5678
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhh
Q 000194 1699 AAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIAC 1755 (1880)
Q Consensus 1699 ~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~ 1755 (1880)
..|..|++++|++..+|+.+|.....+-..+.. ......|++.|-+++..
T Consensus 59 ~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~-------~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 59 ELCEKAIEVGRENREDYRQIAKAYARIGNSYFK-------EEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHhc
Confidence 999999999999999999998877766554422 24567899999998876
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.47 E-value=2.4 Score=42.74 Aligned_cols=86 Identities=9% Similarity=0.086 Sum_probs=56.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHc
Q 000194 1361 ESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNM 1440 (1880)
Q Consensus 1361 ~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l 1440 (1880)
+.-|-+.|+|++|+..|++.+...++. .....++-.||..+|+|+.-....+....- ++..-.. -...+.+...+
T Consensus 11 Gn~~~~~g~~~~Ai~~~~kal~~~p~~---~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-~p~~~~a-~~~lg~~~~~l 85 (201)
T d2c2la1 11 GNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALEL-DGQSVKA-HFFLGQCQLEM 85 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-CTTCHHH-HHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHhhhhhhhhhhHHHHHHHHh-CCCcHHH-HHHHHHHHHHC
Confidence 445778899999999999888765443 345667778899999998777776654322 2221111 12346677888
Q ss_pred CChhhHHHHHh
Q 000194 1441 GEWDQMAEYVS 1451 (1880)
Q Consensus 1441 ~~Wd~~~~~~~ 1451 (1880)
|+|+.-..+..
T Consensus 86 ~~~~~A~~~~~ 96 (201)
T d2c2la1 86 ESYDEAIANLQ 96 (201)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 88887655443
|
| >d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Exportin HEAT-like repeat domain: Exportin-1 (Xpo1, Crm1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.47 E-value=33 Score=36.78 Aligned_cols=132 Identities=14% Similarity=0.201 Sum_probs=90.0
Q ss_pred ccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCC--CcchhHHHHHHHHHHHHhhcCccch----hchH
Q 000194 120 EVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGD--RVEYRRFAAVLILKEMAENASTVFN----VHVA 193 (1880)
Q Consensus 120 ~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~--~~~~~R~aA~~~l~~la~~~p~~l~----~~l~ 193 (1880)
|...|++|....+..+.++-.......+...+..+...++-+..+ .-+..|..=..+|+.+..+|+..+. .++.
T Consensus 87 p~~R~~eVL~l~~~ii~kl~~~~~~~v~~I~~~VFe~Tl~MI~~df~~yPehR~~ff~LL~~i~~~cf~~ll~lp~~qf~ 166 (321)
T d1w9ca_ 87 PAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFK 166 (321)
T ss_dssp GGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHH
T ss_pred hhhccHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccchhChHHHHHHHHHHHHHHHHCHHHHHcCCHHHHH
Confidence 445678999888887777655433334445555556666666543 4457888989999999999987543 5788
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhch---hhHHHHHHHHHHHHHhhccCC
Q 000194 194 EFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRET---RWRVQWYYRMFEATQDGLGRN 251 (1880)
Q Consensus 194 ~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~---~~~~~~~~~~l~~~~~~l~~~ 251 (1880)
.+++.+.-|+++++..|.+.+.+++..++..+...+. .....++..++..+..-+.++
T Consensus 167 ~vidsi~wa~kH~~~~V~~~gL~~l~~ll~n~~~~~~~~~~F~~~y~~~il~~if~vltD~ 227 (321)
T d1w9ca_ 167 LVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDT 227 (321)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHCh
Confidence 8899888899999999999999888887766553221 122334445555555555443
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| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=83.41 E-value=3.1 Score=40.80 Aligned_cols=106 Identities=10% Similarity=0.034 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhh-------HHHHHHHHhhhHhhcC
Q 000194 1614 QVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPL-------IARVYLKLGSWKRALP 1686 (1880)
Q Consensus 1614 ~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~a~~~~~lg~w~~~~~ 1686 (1880)
....+.+..++..|+ -.+|+...++.+.-+......... .......+ +|.||+++|+
T Consensus 16 ~~~~e~G~~~~~~~~---~~~A~~~Y~~al~~~~~~~~~~~~-------~~~~~~~~~~~~~~Nla~~~~~l~~------ 79 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGK---YVQAVIQYGKIVSWLEMEYGLSEK-------ESKASESFLLAAFLNLAMCYLKLRE------ 79 (168)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTTCCSCCHH-------HHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhccchh-------hhhhcchhHHHHHHhHHHHHHHhhh------
Confidence 344567777888884 678999988877654322110000 00011122 3455555554
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1687 PGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1687 ~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
.++.+..|..+++++|+..++|+..|.....+ .-...|+..|-+++.+.
T Consensus 80 -------~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l--------------~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 80 -------YTKAVECCDKALGLDSANEKGLYRRGEAQLLM--------------NEFESAKGDFEKVLEVN 128 (168)
T ss_dssp -------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHSC
T ss_pred -------cccchhhhhhhhhcccchHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhC
Confidence 47788999999999999999999999875541 12358999999999885
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.86 E-value=19 Score=38.30 Aligned_cols=187 Identities=14% Similarity=0.071 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
.+.|.+-+++.+..|+++.|..+..++.......... ..........+.+....|+ ..+|+..+++.+.-...
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~----~~~a~~~~~~g~~y~~~~~---~~~A~~~~~~a~~~~~~ 109 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE----DEAGNTYVEAYKCFKSGGN---SVNAVDSLENAIQIFTH 109 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHhCC---cHHHHHHHHHhhHHhhh
Confidence 6789999999999999999999988877642211000 0012334455666767774 67899988876653321
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc------hHHHHHHHHHH
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW------GKAWHSWALFN 1722 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~------~k~w~~wA~~n 1722 (1880)
.......+.++..+|+..... ....++.+..|++|.++.+.. ..+|..+|.+.
T Consensus 110 ----------------~~~~~~~~~~~~~l~~~~~~~-----~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~ 168 (290)
T d1qqea_ 110 ----------------RGQFRRGANFKFELGEILEND-----LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK 168 (290)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------------cccchhHHHHHHHHHHhHhhH-----HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Confidence 122345677788888765432 246899999999998876533 23455555443
Q ss_pred HHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcch-HHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1723 TAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDS-LQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1723 ~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~-~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
.+ . .-...|++.|-+++............ -....+..-+++..|+.......+.+....-|
T Consensus 169 ~~-------~-------g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 169 AL-------D-------GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp HH-------T-------TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HH-------c-------ChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 32 1 12357888888887764321111111 12234555566777887777777777765444
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| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.27 E-value=2.7 Score=42.38 Aligned_cols=102 Identities=14% Similarity=0.073 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
........+..-+.|+++.|.....++...+|. .+....-.+.++...|+ ..+|+..++..+. +.
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~----------~~~~~~~lg~~y~~~~~---~~~Ai~~~~~al~-l~- 68 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----------VAVYYTNRALCYLKMQQ---PEQALADCRRALE-LD- 68 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHTT-SC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHhHHHHHhhhhh---hhhhhHHHHHHHH-hC-
Confidence 344566778888999999999999988887663 35666677888888885 6789988887542 11
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~ 1711 (1880)
+..+++|..+|.....+ ...++.+..|++|++++|+.
T Consensus 69 --------------------p~~~~a~~~lg~~~~~l------~~~~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 69 --------------------GQSVKAHFFLGQCQLEM------ESYDEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp --------------------TTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHT
T ss_pred --------------------CCcHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCccc
Confidence 11244566667766655 34688889999999888754
|