Citrus Sinensis ID: 000200
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1871 | 2.2.26 [Sep-21-2011] | |||||||
| Q94FN2 | 1978 | Protein MOR1 OS=Arabidops | yes | no | 0.989 | 0.936 | 0.789 | 0.0 | |
| Q5N749 | 1997 | Protein MOR1 OS=Oryza sat | yes | no | 0.990 | 0.927 | 0.744 | 0.0 | |
| Q14008 | 2032 | Cytoskeleton-associated p | yes | no | 0.743 | 0.685 | 0.306 | 1e-177 | |
| A2AGT5 | 2032 | Cytoskeleton-associated p | yes | no | 0.749 | 0.689 | 0.298 | 1e-171 | |
| Q1ZXQ8 | 2013 | Centrosomal protein 224 O | yes | no | 0.520 | 0.483 | 0.265 | 1e-95 | |
| O94534 | 809 | Spindle pole body compone | yes | no | 0.268 | 0.621 | 0.283 | 9e-47 | |
| Q09933 | 882 | Phosphoprotein p93 OS=Sch | no | no | 0.249 | 0.529 | 0.252 | 2e-31 | |
| P46675 | 888 | Protein STU2 OS=Saccharom | yes | no | 0.343 | 0.724 | 0.251 | 1e-29 | |
| G5EEM5 | 1415 | Zygote defective protein | yes | no | 0.118 | 0.156 | 0.288 | 2e-17 | |
| Q2UCC9 | 1184 | Protein stu1 OS=Aspergill | no | no | 0.156 | 0.246 | 0.226 | 0.0003 |
| >sp|Q94FN2|MOR1_ARATH Protein MOR1 OS=Arabidopsis thaliana GN=MOR1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 2983 bits (7734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1474/1866 (78%), Positives = 1648/1866 (88%), Gaps = 14/1866 (0%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPWEDRL HKNWKVRNEAN+DLA++ DSITDPKD R+R+ G LF+KTV
Sbjct: 3 TEDEKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGHLFRKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDALIA+L+AAD+DAGRYAKEVCDAIA KCLTGR TV+KAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALIAFLRAADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEAVDVFLD MEKAIKNKVAKAVVPA+DVMFQALSEFG+K+IPPKRILKMLPELFDHQD
Sbjct: 123 ELEAVDVFLDTMEKAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRAS+KG+TLELCRWIGKDPVK+ILFEKMRDTMKKELE EL NV+ A+PTRKIR+EQ
Sbjct: 183 QNVRASAKGVTLELCRWIGKDPVKSILFEKMRDTMKKELEAELANVTAGAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
DKE E S+ VG GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 DKEPEAEASSDVVGDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
RK+AVAELTKLASTK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS
Sbjct: 303 RKEAVAELTKLASTKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
SSRF+LPVLLEKLKEKK +V + LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS
Sbjct: 363 ASSRFMLPVLLEKLKEKKQSVTDPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
TL W+TFC+ETS+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPL
Sbjct: 423 STLTWLTFCLETSNKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLSEMIAGSGG GTSS VQ+S GS + S++SFVRKSAASM
Sbjct: 483 ERSLEKLDDVRKKKLSEMIAGSGGGDQAGTSSVTVQSSVGST-ATGNSDASFVRKSAASM 541
Query: 542 LSGKRPVSAAPAS-KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600
LSGKRP +A AS K G KKDGS + E SK E PEDVEP+EM LEEIE+RLGS
Sbjct: 542 LSGKRPAPSAQASKKVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIENRLGS 601
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ 660
L+ +TV QLKS+VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKNVQVQ
Sbjct: 602 LVKPETVSQLKSSVWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQ 661
Query: 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
QQVIE+I Y+++TA KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FE
Sbjct: 662 QQVIEIITYISSTAAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFE 721
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
RL+KIMK+HKNPKVLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATI
Sbjct: 722 RLFKIMKEHKNPKVLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATI 781
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840
KLLGALHKFVGPDIKGFL DVKPALLSALD EYEKNPFEGT PK+ V + ++S SSG
Sbjct: 782 KLLGALHKFVGPDIKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVV-KTSVSTSTSSG 840
Query: 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900
G D LPREDIS K TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGL
Sbjct: 841 GLDSLPREDISTKITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGL 900
Query: 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960
RGRL DSNKNLVM TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL L
Sbjct: 901 RGRLLDSNKNLVMQTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAAL 960
Query: 961 DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1020
D WL AVHLDKM+PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS A
Sbjct: 961 DLWLGAVHLDKMIPYIIIALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTA 1020
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQ 1074
MTDKS+DVRKAAE CI EILR GQE IEKNLKDIQGPALAL+LE+++ +S+
Sbjct: 1021 MTDKSADVRKAAEGCISEILRVSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSK 1080
Query: 1075 VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134
GP SK +K+ KS SNG K GNR SR +PTKG+ I SV D A+QSQALLN
Sbjct: 1081 AMAGPVSKGVTKISKSTSNGTLKQGNR---SRAVPTKGS--SQITSVHDIAIQSQALLNT 1135
Query: 1135 KDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEML 1194
KDSNKEDRER+VVRR KFE+ R EQIQ+LENDMMK+FREDL +RLLS DFKKQVDGLE+L
Sbjct: 1136 KDSNKEDRERVVVRRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEIL 1195
Query: 1195 QKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 1254
QKALPS+ K+IIEVLD+LLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EA
Sbjct: 1196 QKALPSVSKEIIEVLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEA 1255
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDL 1314
A+FLPCL EK GHNIEKVREKMREL KQI+ YS KT PYILEGLRSKNNRTRIEC DL
Sbjct: 1256 AIFLPCLAEKLGHNIEKVREKMRELMKQIIQAYSVGKTYPYILEGLRSKNNRTRIECTDL 1315
Query: 1315 VGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
+G+L++ G EI G LK L IVASLTAERDGE+RKAALNT+ATGY+ILG DIW+YVGKLT
Sbjct: 1316 IGYLLETCGTEIGGLLKYLNIVASLTAERDGELRKAALNTMATGYQILGADIWKYVGKLT 1375
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
DAQKSM+DDRFKWK ++MEK++EGKPGEARAALRRSVR++G ++AEQSGD+SQ+V GP
Sbjct: 1376 DAQKSMIDDRFKWKAKDMEKRREGKPGEARAALRRSVRDSGPEVAEQSGDISQTVPGPLF 1435
Query: 1435 MRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQAT 1494
R++YG SE +ER+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+
Sbjct: 1436 PRQSYGISEQMLERTPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQAS 1495
Query: 1495 NDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAY 1554
NDPE S +DELVKDAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+
Sbjct: 1496 NDPEESAIDELVKDADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAH 1555
Query: 1555 AVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLL 1614
AV+E TL+SLITELLLWLLDERVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LL
Sbjct: 1556 AVKEGTLESLITELLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLL 1615
Query: 1615 RPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQ 1674
RPLDPSRWPSPA+ E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ
Sbjct: 1616 RPLDPSRWPSPATAEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQ 1675
Query: 1675 ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLN 1734
+LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLN
Sbjct: 1676 DLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLN 1735
Query: 1735 LETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIG 1794
LETLAAARMLT+TGP GQTHW DS ANNP+ NSAD QLKQEL AIFKKIGDKQT TIG
Sbjct: 1736 LETLAAARMLTATGPVGQTHWTDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSTIG 1795
Query: 1795 LYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAA 1854
LY+LY IT+ YPKVDIF+QLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++
Sbjct: 1796 LYDLYHITKSYPKVDIFSQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSS 1855
Query: 1855 LGSVVP 1860
L P
Sbjct: 1856 LALPSP 1861
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Microtubule-binding protein that is essential for cortical microtubules organization and function. Essential for maintaining the interphase cortical array and for correct morphogenesis. Promotes rapid growth and shrinkage of microtubules and suppresses the pausing of interphase microtubules. Regulates the structure and function of microtubule arrays during mitosis and cytokinesis. Probably not required for cellulose microfibrils alignment in roots. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5N749|MOR1_ORYSJ Protein MOR1 OS=Oryza sativa subsp. japonica GN=MOR1 PE=2 SV=1 | Back alignment and function description |
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Score = 2803 bits (7266), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1404/1887 (74%), Positives = 1628/1887 (86%), Gaps = 34/1887 (1%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPW++RL HKNWKVRN+ANIDLAALCDSITDPKD R+RE GPLFKKTV
Sbjct: 3 TEDEKLLKEAKKLPWDERLQHKNWKVRNDANIDLAALCDSITDPKDARLREFGPLFKKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDAL+A+ +AADADA RYAKEVCDAI AKCLTGRPKTVEKAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALLAFQRAADADASRYAKEVCDAIVAKCLTGRPKTVEKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEA +VFL+ MEKA+KNKVAKAVVPAIDVMFQALSEFGAK++PPK+ILKMLPELFDH D
Sbjct: 123 ELEAAEVFLESMEKAVKNKVAKAVVPAIDVMFQALSEFGAKVVPPKKILKMLPELFDHPD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRASSKGLTLELCRWIGK+PVK ILFEKMRDTMKKELE EL NVSG A+PTRKIR+EQ
Sbjct: 183 QNVRASSKGLTLELCRWIGKEPVKAILFEKMRDTMKKELEAELANVSGIAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
+KEL +E++ E G SEE+ + P EIDEY+LVDPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 EKELEEEVVPEAAGTNNSEEAVPEAPMEIDEYDLVDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
R+DAVAELTKLASTK+IAPGDF E+CRTLKKLITDVN+AV+VEA QAIGNLA+GLRTHFS
Sbjct: 303 RRDAVAELTKLASTKKIAPGDFHEICRTLKKLITDVNLAVSVEATQAIGNLAKGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
G+SR LLPVLLEKLKEKKPT+ E+L+QTLQAMHK+GC+ L+DV+EDV+ +VKNKVPLVRS
Sbjct: 363 GNSRVLLPVLLEKLKEKKPTMTEALSQTLQAMHKSGCITLLDVIEDVRVAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
LTLNWV FCIETS+KA VLK+HK+YVPICMECLNDGTPEVRDA+FSVL AIAK VGM+PL
Sbjct: 423 LTLNWVAFCIETSNKATVLKLHKEYVPICMECLNDGTPEVRDASFSVLTAIAKMVGMKPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLS+MI GS D +GT +A +G + E +SS +R+SAASM
Sbjct: 483 ERSLEKLDDVRKKKLSDMI-GSASDTTSGTVAA--SNTGVGTSAREVMDSSSMRRSAASM 539
Query: 542 LSGKRPVSAAPASKKGGPVK-PSAKKDGSGKQETSKLTEAP--EDVEPSEMSLEEIESRL 598
LSGK+PV A PA+KK GP K +AKK G Q SK + AP EDVEPSEMSLEEIE +L
Sbjct: 540 LSGKKPVQAVPATKKSGPAKSATAKKTDGGPQ--SKASAAPVIEDVEPSEMSLEEIEEKL 597
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658
S++ ++T+ QLKS VWKERLEAIS L+Q+VE++ LD+S E+LVRL+C +PGWSEKNVQ
Sbjct: 598 SSVVKSETISQLKSTVWKERLEAISMLKQEVESLTELDKSAELLVRLLCAVPGWSEKNVQ 657
Query: 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
VQQQVIEV Y+A+T +FPK+CVVLCLLGISERVADIKTR HAMKCLT F EAVGPGF+
Sbjct: 658 VQQQVIEVSTYIASTVNRFPKRCVVLCLLGISERVADIKTRGHAMKCLTAFCEAVGPGFV 717
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
FERLYKIMK+HKNPKVLSEGILWMVSAVEDFG+S+LKLKD IDFCKD GLQSSAAATRNA
Sbjct: 718 FERLYKIMKEHKNPKVLSEGILWMVSAVEDFGISNLKLKDTIDFCKDIGLQSSAAATRNA 777
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV-VPKKTVRASESTSSV 837
TIKL+G LHKFVGPDIKGFL+DVKPALLS LDAEYEKNPFEGT PK+TVRA+++ SS
Sbjct: 778 TIKLIGVLHKFVGPDIKGFLSDVKPALLSTLDAEYEKNPFEGTASAPKRTVRAADAVSSA 837
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
SSG SDGLPREDIS K TPTL+K+L SPDWK+RLESI+AV+KI+EEA+KRIQP GT ELF
Sbjct: 838 SSGTSDGLPREDISAKITPTLLKNLGSPDWKLRLESIDAVSKIVEEAHKRIQPTGTVELF 897
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
LR RLYDSNKNLVMATL T+G +ASAMGPAVEKSSKG+L+D+LKCLGDNKKHMRECTL
Sbjct: 898 TALRARLYDSNKNLVMATLSTIGGLASAMGPAVEKSSKGILADVLKCLGDNKKHMRECTL 957
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
T LD W+AA LDKMVPY+T L D K G+EGRKDLFDWLSK + +S +A LLKP+
Sbjct: 958 TALDLWVAAAQLDKMVPYITVTLGDQKTGSEGRKDLFDWLSKHASNMSDPSEALPLLKPS 1017
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
+ ++ DKSS+VRKAAE+ + EIL+ GQ+ + KNLKD+ P LA++ ER+KL+ +
Sbjct: 1018 ASSLMDKSSEVRKAAESFMNEILKICGQDVVAKNLKDLPSPTLAIVAERLKLSTVHEGFS 1077
Query: 1075 -------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
SM SK+ SK K N + ++A+S R IP + + +++S QD ++Q
Sbjct: 1078 DSVKMVTTSMSLPSKAGSKNNKHGPNDRGSNVSKAVSQRGIPARSSV--TMISSQD-SIQ 1134
Query: 1128 SQALLNVKDSNKEDRERMV-VRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKK 1186
SQAL N+KDSNKE+RER V VR+FKFE+PR EQI EL+ ++ ++FRED+ RL ++DFK+
Sbjct: 1135 SQALFNIKDSNKEERERRVLVRKFKFEEPRREQIDELKIELFRHFREDVSLRLWNSDFKR 1194
Query: 1187 QVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEG 1246
Q+DG+E+LQKALPS RK++IE+LDILLRWFVL+FC+SNTTCLLKVL+FLPELFD L+D+
Sbjct: 1195 QIDGIELLQKALPSSRKEVIELLDILLRWFVLRFCESNTTCLLKVLDFLPELFDVLKDQS 1254
Query: 1247 YSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNR 1306
Y LTE+EAA+FLPCL+EKSGHNIEKVREKM EL KQ+VN YS K LPYILEGLRSKNNR
Sbjct: 1255 YMLTEAEAAIFLPCLMEKSGHNIEKVREKMGELIKQMVNIYSLPKLLPYILEGLRSKNNR 1314
Query: 1307 TRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDI 1366
TRIECVD++G+ +DHHG E+SG LK+L VA+LTAERDGEIRKAALNTLAT YK LG+D+
Sbjct: 1315 TRIECVDIIGYFMDHHGTEVSGLLKNLPSVAALTAERDGEIRKAALNTLATAYKNLGDDV 1374
Query: 1367 WRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGD-V 1425
WRYVGKL+DAQ+SMLDDRFKWK REM+K++EG+PG+ARAALRRSVRENGSDIAEQSG+ V
Sbjct: 1375 WRYVGKLSDAQRSMLDDRFKWKAREMDKRREGRPGDARAALRRSVRENGSDIAEQSGEAV 1434
Query: 1426 SQSVSGPTLMRRNYGHSELHVERSIMPRALASVS-GPTDWNEALDIISFGSPEQSVEGMK 1484
S+S++G + R N+G+S+ H ++PR +A+ + GP DW EALDI++ G PEQSVEGMK
Sbjct: 1435 SRSMAGSMISRENFGYSDAH----MVPRQMATATPGPADWREALDIVALGLPEQSVEGMK 1490
Query: 1485 VVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLM 1544
V+CHEL QA DPE SV+D+L+K+ADRLVSCLA V KTF+FSL+GASSRSCKYVLNTLM
Sbjct: 1491 VICHELTQAV-DPESSVLDDLIKEADRLVSCLAVMVPKTFNFSLSGASSRSCKYVLNTLM 1549
Query: 1545 QTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRT 1604
QTFQ KRLA+AV+E TLD+LITELLLWLLDERVP MDDGSQLLKALNVLMLKILDNA+RT
Sbjct: 1550 QTFQIKRLAHAVKEGTLDNLITELLLWLLDERVPLMDDGSQLLKALNVLMLKILDNAERT 1609
Query: 1605 SSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDR 1664
SSFVVLINLLRPLDPSRWPSP ES A +NQ+FSDLVVKCLIKLTKVLQSTIY+VDLDR
Sbjct: 1610 SSFVVLINLLRPLDPSRWPSPTPPESLAVKNQKFSDLVVKCLIKLTKVLQSTIYEVDLDR 1669
Query: 1665 ILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQ 1724
ILQSIH+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRG AIKGHLSMVPID +PQ
Sbjct: 1670 ILQSIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGTAIKGHLSMVPIDAEPQ 1729
Query: 1725 PIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKK 1784
PIILAYIDLNL+TLAAARMLT +G GQTHWGD+ +NNP +T+S DAQLKQELAA+FKK
Sbjct: 1730 PIILAYIDLNLQTLAAARMLTPSGTMGQTHWGDAGSNNPNPSTHSTDAQLKQELAAVFKK 1789
Query: 1785 IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSS 1844
IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS
Sbjct: 1790 IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSS 1849
Query: 1845 VPMATPPPAALGSVVPLLQKFFPPRIH 1871
+P++T KF P +H
Sbjct: 1850 LPLST----PPPIAPIPSPKFAPSPVH 1872
|
Microtubule-associated protein that is essential for cortical microtubules organization and function. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q14008|CKAP5_HUMAN Cytoskeleton-associated protein 5 OS=Homo sapiens GN=CKAP5 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 623 bits (1606), Expect = e-177, Method: Compositional matrix adjust.
Identities = 463/1511 (30%), Positives = 761/1511 (50%), Gaps = 119/1511 (7%)
Query: 13 KLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKA 72
KLP + + HK WK R + + I D K + L KK V DSNA VQ K
Sbjct: 9 KLPVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKFVTDSNAVVQLKG 68
Query: 73 LDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLD 131
L+A + Y++ A AG+ EV + +K + K E + ++++E+E + +
Sbjct: 69 LEAALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYIEIEKGEAVQE 127
Query: 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGL 191
+ K + NK K +V I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K +
Sbjct: 128 ELLKGLDNKNPKIIVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLI 187
Query: 192 TLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQDKELGQELI 250
+E+ RWI +D ++ L + + KELE E V + +A RPTR +R++Q+ E E
Sbjct: 188 AVEIYRWI-RDALRPPL-QNINSVQLKELEEEWVKLPTSAPRPTRFLRSQQELEAKLEQQ 245
Query: 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELT 310
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ +
Sbjct: 246 QSAGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALESVE 304
Query: 311 KLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369
L ++ GD+ ++ + LKK++ D N+ + A + + LA GLR F + ++P
Sbjct: 305 VLIKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVP 364
Query: 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT- 428
+LEK KEKKP V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 365 TILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIAR 422
Query: 429 ---FCIETSSKAAVLKVHKDYVPIC---MECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE 482
C ++ ++LK P C ++ +ND PEVRDAAF L K VG + +
Sbjct: 423 SFRHCTASTLPKSLLK------PFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVN 476
Query: 483 RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSF---VRKSAA 539
+ +D ++ +K+ E S +V+ G + A + F ++AA
Sbjct: 477 PFLADVDKLKLDKIKE-------------CSEKVELIHGKKAGLAADKKEFKPLPGRTAA 523
Query: 540 SMLSGKR-----------PVSAAPASKKGGPVKPS--AKKDGSGKQETS--KLTEAPEDV 584
S +G + P+ APA+K GGP K A G+G T K E E V
Sbjct: 524 SGAAGDKDTKDISAPKPGPLKKAPAAKAGGPPKKGKPAAPGGAGNTGTKNKKGLETKEIV 583
Query: 585 EPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVR 644
EP E+S+E E + +++P + L S+ WKERL + ++ VE + + + LVR
Sbjct: 584 EP-ELSIEVCEEKASAVLPPTCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVR 642
Query: 645 LVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMK 704
++ PGW E N QV Q + ++ +A F K + L G+ +++ D+K +A +
Sbjct: 643 MLAKKPGWKETNFQVMQMKLHIVALIAQKGN-FSKTSAQVVLDGLVDKIGDVKCGNNAKE 701
Query: 705 CLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCK 764
+T +EA + E++ + KNPK SE + W+ +A+++FG S L +K I K
Sbjct: 702 AMTAIAEACMLPWTAEQVVSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK 761
Query: 765 DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVP 824
T L ++ A R A I LLG ++ +VGP ++ F D KPALLS +DAE+EK +G P
Sbjct: 762 -TALAATNPAVRTAAITLLGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEK--MQGQSPP 818
Query: 825 KKTVRASESTSSVSSGGSDG-------------LPREDISGKFTPTLVKSLESPDWKVRL 871
T S+ ++S + G DG LPR +IS K T LV + +WK+R
Sbjct: 819 APTRGISKHSTSGTDEGEDGDEPDDGSNDVVDLLPRTEISDKITSELVSKIGDKNWKIRK 878
Query: 872 ESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE 931
E ++ V I+ +A K IQP GEL L+GRL DSNK LV TL L +A AMGP ++
Sbjct: 879 EGLDEVAGIINDA-KFIQP-NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPNIK 936
Query: 932 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRK 991
+ K + I+ LGD+K ++R L ++AW + + + + K R+
Sbjct: 937 QHVKNLGIPIITVLGDSKNNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQ 996
Query: 992 DLFDWLSKQLTGLSGFPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK 1050
+L WL+++L L P L P + + D++ DVRK A+ + + G E + K
Sbjct: 997 ELLGWLAEKLPTLRSTPTDLILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAK 1056
Query: 1051 ---NLKDIQGPALALILERIKLN-----------------GASQVSMGPTSK------SS 1084
LK + +LE+ K+N G++ P S SS
Sbjct: 1057 ATGKLKPTSKDQVLAMLEKAKVNMPAKPAPPTKATSKPMGGSAPAKFQPASAPAEDCISS 1116
Query: 1085 SKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRER 1144
S PK G +SS+ +G + S S+++ +S + V + KE R +
Sbjct: 1117 STEPKPDPKKAKAPG---LSSKAKSAQGKKMPSKTSLKEDEDKSGPIFIVVPNGKEQRMK 1173
Query: 1145 ----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPS 1200
+ V ++ F PR E I++L+ M + L + +DF+ L ++ L S
Sbjct: 1174 DEKGLKVLKWNFTTPRDEYIEQLKTQMSSCVAKWLQDEMFHSDFQHHNKALAVMVDHLES 1233
Query: 1201 IRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPC 1260
++ +I LD++L+W L+F +NT+ L+K LE+L LF L +E Y LTE+EA+ F+P
Sbjct: 1234 EKEGVIGCLDLILKWLTLRFFDTNTSVLMKALEYLKLLFTLLSEEEYHLTENEASSFIPY 1293
Query: 1261 LVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLID 1320
LV K G + +R+ +R + ++ Y A+K P+I+EG +SKN++ R EC++ +G L++
Sbjct: 1294 LVVKVGEPKDVIRKDVRAILNRMCLVYPASKMFPFIMEGTKSKNSKQRAECLEELGCLVE 1353
Query: 1321 HHGAEISGQL--KSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQK 1378
+G + K+L+ +A +RD +R AALNT+ T Y + G+ +++ +G L++
Sbjct: 1354 SYGMNVCQPTPGKALKEIAVHIGDRDNAVRNAALNTIVTVYNVHGDQVFKLIGNLSEKDM 1413
Query: 1379 SMLDDRFKWKVREME----KKKEGKPGEAR------AALRRSVRENGSDIAEQSGDVSQS 1428
SML++R K + K+ E KP A+ LR+ E+ S Q+ +S
Sbjct: 1414 SMLEERIKRSAKRPSAAPIKQVEEKPQRAQNISSNANMLRKGPAEDMSSKLNQARSMSGH 1473
Query: 1429 VSGPTLMRRNY 1439
++RR +
Sbjct: 1474 PEAAQMVRREF 1484
|
Binds to the plus end of microtubules and regulates microtubule dynamics and microtubule organization. Promotes cytoplasmic microtubule nucleation and elongation. Plays a major role in organizing spindle poles. Homo sapiens (taxid: 9606) |
| >sp|A2AGT5|CKAP5_MOUSE Cytoskeleton-associated protein 5 OS=Mus musculus GN=Ckap5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 604 bits (1558), Expect = e-171, Method: Compositional matrix adjust.
Identities = 448/1501 (29%), Positives = 753/1501 (50%), Gaps = 99/1501 (6%)
Query: 13 KLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKA 72
KLP + + HK WK R + + I D K + L KK V DSNA VQ K
Sbjct: 9 KLPVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKYLGLIKKFVTDSNAVVQLKG 68
Query: 73 LDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLD 131
L+A + Y++ A AG+ EV + +K + K E + +++VE+E + +
Sbjct: 69 LEAALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYVEIEKGESVQE 127
Query: 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGL 191
+ K + NK K +V I+ + +ALSEFG+KII K I+K+LP+LF+ +D+ VR +K
Sbjct: 128 ELLKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPIIKVLPKLFESRDKAVRDEAKLF 187
Query: 192 TLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELI 250
+E+ RW +D VK L + + KELE E V + +G +P+R +R++Q+ E E
Sbjct: 188 AIEIYRW-NRDAVKHTL-QNINSVQLKELEEEWVKLPTGAPKPSRFLRSQQELEAKLEQQ 245
Query: 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELT 310
G D P++D YEL+D V+IL+ L K F++ ++A KW ERK+A+ +
Sbjct: 246 QSAGGDAEGGGDDGDEVPQVDAYELLDAVEILSKLPKD-FYDKIEAKKWQERKEALEAVE 304
Query: 311 KLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369
L ++ GD+ ++ + LKK++ D N+ + A + + LA GLR F + ++P
Sbjct: 305 VLVKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVP 364
Query: 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT- 428
+LEK KEKKP V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 365 TILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIAR 422
Query: 429 ---FCIETSSKAAVLKVHKDYVPIC---MECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE 482
C ++ ++LK P C ++ +ND PEVRDAAF L K VG + +
Sbjct: 423 SFRHCTSSTLPKSLLK------PFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKSVN 476
Query: 483 RSIEKLDDVRRNKLSE------MIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRK 536
+ +D ++ +++ E ++ G +AT ++ +P A+ + K
Sbjct: 477 PFLADVDKLKLDRIKECSEKVELVHGKKSGLATEKKESK------PLPGRAAASGAAGDK 530
Query: 537 SAASMLSGKRP--VSAAPASKKGGPVKPSAKK----DGSGKQETSKLTEAPEDVEPSEMS 590
+SG +P + P +K GGP K S + K E E VEP E+S
Sbjct: 531 DTKD-VSGPKPGPLKKTPTAKAGGPSKKGKTTAPGGSASAGTKNKKGLETKEIVEP-ELS 588
Query: 591 LEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLP 650
+E E + +++P + L S+ WKERL + ++ VE ++ + + LV+++ P
Sbjct: 589 IEVCEEKASAVLPPTCIQLLDSSNWKERLACMEEFQKAVELMERTEMPCQALVKMLAKKP 648
Query: 651 GWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFS 710
GW E N QV Q + ++ +A F K + L G+ +++ D+K +A + +T +
Sbjct: 649 GWKETNFQVMQMKLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIA 707
Query: 711 EAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQS 770
EA + E++ + KNPK SE + W+ +A+++FG S L +K I K T L +
Sbjct: 708 EACMLPWTAEQVMSMAFSQKNPKNQSETLNWLSNAIKEFGFSELNVKAFISNVK-TALAA 766
Query: 771 SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830
+ A R + I LLG ++ +VGP ++ D KPALLS +DAE++K + P + + A
Sbjct: 767 TNPAVRTSAITLLGVMYLYVGPSLRMIFEDEKPALLSQIDAEFQKMQGQSPPAPTRGI-A 825
Query: 831 SESTSSVSSGGS------------DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVN 878
STS+ G D LPR +IS K T LV + +WK+R E ++ V
Sbjct: 826 KHSTSATDEGEDGEEPGEGGNDVVDLLPRIEISDKITSELVSKIGDKNWKIRKEGLDEVA 885
Query: 879 KILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938
I+ EA K IQP GEL L+GRL DSNK LV TL L +A AMG + + K +
Sbjct: 886 GIINEA-KFIQP-NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGANIRQHVKNLG 943
Query: 939 SDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLS 998
++ LGD+K ++R L ++AW + + + + K R++L WL+
Sbjct: 944 IPVITVLGDSKNNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLA 1003
Query: 999 KQLTGLSGFPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKD 1054
++L L P L P + + D++ DVRK A+ + + G E + K LK
Sbjct: 1004 EKLPTLRSTPTDLILCVPHLYSCLKDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKP 1063
Query: 1055 IQGPALALILERIKLNGASQVS---------MGPTSKSSSK-VPKSASNGVS-------- 1096
+ +LE+ K N S+ + MG ++ + ++ +P + VS
Sbjct: 1064 TSKDQVLAMLEKAKANMPSKPAAPAKAMSKPMGGSAPAKTQPIPAPVEDSVSSTIEAKPD 1123
Query: 1097 --KHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRER----MVVRRF 1150
K +SS+ +G + S ++++ +S + V + KE R R + V ++
Sbjct: 1124 LKKAKAPGVSSKAKSVQGKKVPSKTTLKEDDDKSGPIFIVVPNGKEQRMRDEKGLKVLKW 1183
Query: 1151 KFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLD 1210
F PR E I++L+ M + L + +DF+ L ++ L S + +I LD
Sbjct: 1184 NFTTPRDEYIEQLKTQMSTCVAKWLQDEMFHSDFQHHNKALAVMVDHLESEKDGVISCLD 1243
Query: 1211 ILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIE 1270
++L+W L+F +NT+ L+K LE+L LF L +E Y LTE+EA+ F+P L+ K G +
Sbjct: 1244 LILKWLTLRFFDTNTSVLMKALEYLKLLFTLLSEEEYHLTENEASSFIPYLILKVGEPKD 1303
Query: 1271 KVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQL 1330
+R+ +R + ++ Y A+K P+I+EG +SKN++ R EC++ +G LI+ +G +
Sbjct: 1304 VIRKDVRAILNRMCLVYPASKMFPFIMEGTKSKNSKQRAECLEELGCLIESYGMNVCQPT 1363
Query: 1331 --KSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWK 1388
K+L+ +A +RD +R AALNT+ T Y + G+ +++ +G L++ SML++R K
Sbjct: 1364 PGKALKEIAIHIGDRDNAVRNAALNTIVTVYNVHGDQVFKLIGNLSEKDMSMLEERIKRS 1423
Query: 1389 VREME----KKKEGKPGEAR------AALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRN 1438
+ K+ E KP + LR+ E+ S Q+ +S ++RR
Sbjct: 1424 AKRPSAAPVKQAEEKPQRTQNINSNANMLRKGPAEDMSSKLNQARSLSGHPEAAQMVRRE 1483
Query: 1439 Y 1439
+
Sbjct: 1484 F 1484
|
Binds to the plus end of microtubules and regulates microtubule dynamics and microtubule organization. Promotes cytoplasmic microtubule nucleation and elongation. Plays a major role in organizing spindle poles. Mus musculus (taxid: 10090) |
| >sp|Q1ZXQ8|MTAA_DICDI Centrosomal protein 224 OS=Dictyostelium discoideum GN=mtaA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 352 bits (904), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 275/1036 (26%), Positives = 510/1036 (49%), Gaps = 63/1036 (6%)
Query: 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDAL 76
EDR+ HKNWK R +L + + E GP FKK +AD N Q++AL+ L
Sbjct: 12 EDRINHKNWKWRVSGLEELTTKFRNSIEGSGPLFNEWGPQFKKILADINPMSQERALEPL 71
Query: 77 IAYLKAADADAGRYAKEVCDAIAAKCL-TGRPKTVEKAQAVFMLWVELEAVDVFLDVMEK 135
A++ D ++A + K + RP+ EK +L +E ++ + ++ + K
Sbjct: 72 SAFIDRCDC-VNKFAASYVGVLVEKLFASTRPRAKEKTIECLLLTIEADSAEPVVEALLK 130
Query: 136 AIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLEL 195
+ K ++ ++ + QAL FG K IP K ILK F+++D+ +R + L +E+
Sbjct: 131 GTSSTSPKILLASLAALTQALKTFGPKQIPVKLILKQFSPWFENRDKGIRDQASELFIEI 190
Query: 196 CRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISEDV 254
RWIGK + ++ E + K L+ + + + A P + R+E K L S+ +
Sbjct: 191 YRWIGKALIP-LISEALTPIQLKALQDQFEKLPTDPAVPLKYTRSEAAKALANA--SKGI 247
Query: 255 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL-TKLA 313
P +V EID Y L+ V+IL P S F+EG++A KW ER + + +L T L
Sbjct: 248 QAKP------EVVEEIDPYSLMTAVNIL-PKLTSEFYEGLQAKKWQERSEQMDKLVTILT 300
Query: 314 STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 373
+T +I DF+E+C+ LKK++ DVN+ + +A+ +IG LA LR F+ + + +LE
Sbjct: 301 NTPKIETADFSELCKALKKILADVNVMIVQKAVVSIGLLADSLRGGFTSYVKPFITPILE 360
Query: 374 KLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433
K KEKK +V +S+ T+ ++ ++L D+++++ ++++KVP ++ L ++ I
Sbjct: 361 KFKEKKTSVLQSVHTTMDSL-VGKSISLSDIIDELTATMQSKVPQIKQEVLVFICNSITN 419
Query: 434 SSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 492
+ K A + KV K I ME LND +RD A AA+ +G R + + ++D ++
Sbjct: 420 TKKPADITKVTKQLTKIFMEALNDTDSNIRDNASKAFAALGGIIGERAMTPYLNQIDPIK 479
Query: 493 RNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAP 552
K+ + + VAT + + + ++ SS S K+P +A
Sbjct: 480 AKKIKDNMPA----VATPVTITPQPLAPVDLKDIDLPVSS----------SNKKPAAAT- 524
Query: 553 ASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL--GSLIPADTVGQL 610
S + + + P S ++I+++L ++ + + L
Sbjct: 525 -----------GNSKSSSTTTPTGRSSNSSPLPPPPSSSDDIKNKLIGAGIVNNEIIEGL 573
Query: 611 KSAVWKERLEAISSLRQQVEAV--QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN 668
WK+RL+A+ + + V+ + +++ E +++L+C P E N QV + +
Sbjct: 574 GKTQWKDRLQAVDDILENVKGLTADSINGMSESIIQLLCDKPSLKESNFQVLSSIFSIFI 633
Query: 669 YLAATATKFP-KKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK 727
+ F ++C L E++ D+K + + + L + E++ P +F +Y+
Sbjct: 634 QCCKNDSNFTQQRCANSYLTTCIEKLTDVKLKEISSELLFSTGESITPHAVFTSIYQFTS 693
Query: 728 DHKNPKVLSEGILWMVSAVEDFGVSHL-----KLKDLIDFCKDTGLQSSAAATRNATIKL 782
+HKNPK++++ ++W+ A+++FG+ +LK L+D+ K L+S+ + + IKL
Sbjct: 694 NHKNPKIIADSLVWIQQAIDEFGIGCCSNGIQQLKPLLDYTKQC-LESTNPDVKKSAIKL 752
Query: 783 LGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 842
L + +G + FL DVK + LD E++K + VP + + S
Sbjct: 753 LCTIKINIGATLTDFLGDVKKPTMEVLDREFQKIRDQKPPVPNRQWKGMPPPGSAPVQIE 812
Query: 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902
PR DIS K TP ++ +L +WK R ++++ + +I+ +AN++IQP G L L+
Sbjct: 813 --FPRVDISVKLTPAIITNLSDANWKTRSDALDEIERIIIDANRKIQPK-LGGLIPALKN 869
Query: 903 RLYDSNKNLVMATLITLGAVASAM-GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
RL D+N+ + TL +G ++ AM G + EK ++ ++ IL LGD+KK +R+ ++ ++
Sbjct: 870 RLTDNNQKCTITTLNIIGMLSQAMGGQSFEKHARLLIPGILLLLGDSKKPVRDAVISCMN 929
Query: 962 AWLAA-VHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP---DAAHLLKPA 1017
+ + + D + + + A RK+ W +T + P + L K
Sbjct: 930 VIVQSDLGFDVFIGSLAAPMIQE--SAFTRKESLAWTIVNVTNMKAAPIPSEINTLAKGI 987
Query: 1018 SIAMTDKSSDVRKAAE 1033
+ DKS+++R A+
Sbjct: 988 ISCLQDKSAEIRSLAD 1003
|
Involved in regulation of microtubule dynamics. Regulates the interaction of microtubules tips with the centrosome and cell cortex. Dictyostelium discoideum (taxid: 44689) |
| >sp|O94534|ALP14_SCHPO Spindle pole body component alp14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 190 bits (483), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 161/568 (28%), Positives = 263/568 (46%), Gaps = 65/568 (11%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRI---RELGPLF 57
MS++++ ++ KLP E R++HK WKVR A + + D DN L+
Sbjct: 1 MSQDQE--EDYSKLPLESRIVHKVWKVRLSAYEECSKSFSLSADGSDNCFELWNNQSELW 58
Query: 58 KKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCD-AIAAKCLTG-RPKTVEKAQA 115
K + DSN Q+ A +AY + +D A+E+ +I+ KCLT R T E A
Sbjct: 59 KSVLTDSNVAAQEAGTAAFVAYCRFSDPSHLLKAREISVLSISEKCLTSPRAGTRENALE 118
Query: 116 VFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPE 175
ML VE ++ ++ + ++ + K + + + + +FGAK+IP K I+ +
Sbjct: 119 ALMLLVEADSAAPVIESIIPSLSARSPKVIASNVAAIASLVEQFGAKVIPSKMIIPHISN 178
Query: 176 LFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR 235
LF H D+NVR + LT+ + RW G DP+K +LF+ +R KELE + P +
Sbjct: 179 LFGHADKNVRKEASRLTVNIYRWTG-DPLKDLLFKDLRPVQTKELESLFAEL--PTEPPK 235
Query: 236 KIRAEQDKELGQELISEDVGPGPSEESTADVPPEI-----------DEYELVDPVDILTP 284
+ R L S+ P+ E+ + P + D+++LV+ VD+L P
Sbjct: 236 QTRF---------LKSQQPTSEPNVETQVEEQPALENEESEPEPSDDQFDLVEEVDVL-P 285
Query: 285 LEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAV 343
+ ++KW +RK+A+ +L + S +I DF + L K ++ D NI V +
Sbjct: 286 NVDPNLETLMASSKWKDRKEALDKLLPVLSQPKIKDNDFFNLVAILTKSVSKDANIMVVI 345
Query: 344 EAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD 403
A I +A+GLR++FS + + LLE+ KEKK V ESL+ + A+ L+ D
Sbjct: 346 NAAHCIQAMAKGLRSNFSKYASTSINALLERSKEKKANVIESLSSAMDAVLATSSLD--D 403
Query: 404 VVEDVKTSVKNKVPLVRSLTLNWVT------------FCIETSSKAAVLKVHKDYVPICM 451
+ E + + NK P ++S + + F ++T +KA V V + P
Sbjct: 404 LAELIASFAGNKNPQIKSSCFSLFSRSFSNMTSLPSKFTVDTCAKACVPGVSDTFEP--- 460
Query: 452 ECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGT 511
VR AA L + K VG R + + + LDD+R++K+ T T
Sbjct: 461 ---------VRSAAAEALGVLMKLVGERAINQYLSPLDDIRKSKIRSF-------YETAT 504
Query: 512 SSARVQTSGGSVPSVEASESSFVRKSAA 539
A+ T V + ES V S A
Sbjct: 505 VKAKAPTKKSKVKPSKQEESKVVVPSNA 532
|
Required for bipolar spindle formation and proper chromosome segregation. Has a role in connecting the kinetochores and the plus end of pole to chromosome microtubules. Also required for the activation of the spindle checkpoint pathway. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q09933|DIS1_SCHPO Phosphoprotein p93 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dis1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 134/530 (25%), Positives = 236/530 (44%), Gaps = 63/530 (11%)
Query: 19 RLLHKNWKVRNEANIDL-----AALCDS-------ITDPKDNRIRELGPLFKKTVADSNA 66
++ K+WKVR EA L AL DS I DP L+K+ + DSN
Sbjct: 13 QIFDKSWKVRFEAYESLLHALNRALDDSDVCFQPWIHDPA---------LWKQGLCDSNV 63
Query: 67 PVQDKALDALIAYLKAADADAGRYAKE-VCDAIAAKCLTGRPKTVEKA--QAVFMLWVEL 123
P Q+ A+ +L +L + AK V + KCL +++ A QA+ +L +
Sbjct: 64 PTQEHAVKSLRCFLDKSRQKGVNSAKSFVVAPLLEKCLPSPRQSIRDASHQALLIL-AKS 122
Query: 124 EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQN 183
+A+D L+ + A + K K V +I + L FG + P K++P LF D+N
Sbjct: 123 DALDYVLEGLFSAARVKHPKQAVASIKELNSLLENFGIPALSPIPFYKLIPTLFAQSDKN 182
Query: 184 VRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV---------------- 227
+R + L++ L W+G + KT +F +++ +LE NV
Sbjct: 183 IRQEASNLSITLYAWVG-NAFKTHVFPQLKQIQVSDLEASFQNVTSRTTTGGHISNSLNT 241
Query: 228 --------SGTARPTRKIRAEQDKELG--QELISEDVGPG-----PSEESTADVPPEIDE 272
S A+P + ++ + Q S P PS+ S + +
Sbjct: 242 QEVVLPSFSSNAKPKPHLSSKSSSQGNTLQRSTSSFSTPNRKVSQPSDFSASPSRSIVSP 301
Query: 273 YELV---DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRT 329
+ + PVD+L+ L F + + KW +RK+A+ + + S GD++E+ R
Sbjct: 302 AKNIVGSTPVDVLSKLTPE-FHTALSSPKWKDRKEALESMVPVCSNPVYQEGDYSELLRV 360
Query: 330 LKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQT 389
+ K + D N+ V A + ++A+ LR F + +LP L ++ KE+K ++ SL
Sbjct: 361 IAKSLKDANVVVVGVAALLLTHIAKALRKGFLPYTGIVLPSLFDRFKERKSSLVHSLLDA 420
Query: 390 LQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449
A+ ++ LN D++++ +K+K P V++ TL W+ C++ + + +
Sbjct: 421 ANAIFESCGLN--DIMDETLEFLKHKNPQVKTETLRWLNRCLQLTDVCPPRASLETLCSL 478
Query: 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEM 499
C+ +ND VR A +VLA + + L + I LD + K+ E+
Sbjct: 479 CVTLINDTFEPVRMATTNVLATLVQIFSQPVLSKYIVGLDPKKLPKILEL 528
|
Has a role in sister chromatid separation. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P46675|STU2_YEAST Protein STU2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STU2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 190/754 (25%), Positives = 352/754 (46%), Gaps = 111/754 (14%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALC-DSITD-PKDNRIRELG---P 55
MS EE++ + LP E+RL +K WK R EA +L L +S+ D +D+ I+
Sbjct: 1 MSGEEEV--DYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPT 58
Query: 56 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVC------DAIAAKCLTG-RPK 108
LF + + DSN Q++A+ AL + + A + + + A + + K LT R
Sbjct: 59 LFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRAT 118
Query: 109 TVEKAQAVFMLWVEL-----EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI 163
T ++ + + L ++V++ + EK K+ K + A + +++ ++ FG
Sbjct: 119 TKTQSMSCILSLCGLDTSITQSVELVIPFFEK----KLPKLIAAAANCVYELMAAFGLTN 174
Query: 164 IPPK----RILKMLPELFDHQDQNVRASSKGLTLELCRWIGK--DPVKTILFEKMRDTMK 217
+ + +LK +P+L H D+NVR+ + L +E+ + G D ++ ILF+K++
Sbjct: 175 VNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQV 234
Query: 218 KELEVELVNVSGTARPTRKI----RAEQDKELGQE--------LISEDVGPGPSEES--- 262
K+L V ++ + + E +K+ QE ++S D G ++
Sbjct: 235 KDLHKLFAKVGDEPSSSKMLFEWEKRELEKKRSQEEEARKRKSILSNDEGEYQIDKDGDT 294
Query: 263 ----TADVPP-------EIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL-- 309
D+PP +ID + ++ IL L K F E + ++KW +R +A+ E
Sbjct: 295 LMGMETDMPPSKQQSGVQIDTFSMLPEETILDKLPK-DFQERITSSKWKDRVEALEEFWD 353
Query: 310 TKLASTKRI--APGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRT-HFSGSS- 364
+ L+ TK++ +++ + +I D NI A Q++ + L+T FS
Sbjct: 354 SVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV 413
Query: 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHK-----AGCLNLVDVVEDVKTSVKNKVPLV 419
+ LL++ KEKKP+V E++ + L + K A D+++D+ +K+K P +
Sbjct: 414 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQI 473
Query: 420 R--SLTLNWVTFCIETSSKAAVLKVHKD-YVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476
R L + E + + + KD VPI ++ +ND P +R F A + K
Sbjct: 474 RMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 533
Query: 477 GMRPLERSIEKLDDVRRNKLSEMIAG-SGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
GM +++E LD+++R K+ E + +A+G++ + ++T+ + P E+ F+
Sbjct: 534 GMNTFVKTLEHLDNLKRKKIEETVKTLPNFSIASGSTHSTIETNKQTGP----MENKFLL 589
Query: 536 KSAASMLSGKRPVSAAP----ASKKGGPV-------KPS--AKKDGSGKQETSKLTEAPE 582
K +S+L KR V+++P K P+ KPS A + S TSK P+
Sbjct: 590 K-KSSVLPSKR-VASSPLRNDNKSKVNPIGSVASASKPSMVAANNKSRVLLTSKSLATPK 647
Query: 583 DV-----EPSEMSLEEIESRLGSLIPADTVGQLKSAVW-KER---LEAISSLRQ-QVEAV 632
+V + +E +EE + RL L Q +W KER LE +++ ++E +
Sbjct: 648 NVVANSTDKNEKLIEEYKYRLQKL-------QNDEMIWTKERQSLLEKMNNTENYKIEMI 700
Query: 633 QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEV 666
+ + E L L +EKN+Q++ + I+V
Sbjct: 701 KENEMLREQLKEAQSKL---NEKNIQLRSKEIDV 731
|
May play a role in the attachment, organization, and/or dynamics of microtubule ends at the spindle pole body. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|G5EEM5|ZYG9_CAEEL Zygote defective protein 9 OS=Caenorhabditis elegans GN=zyg-9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 10/232 (4%)
Query: 269 EIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL--ASTKRIAPGDFTEV 326
E D ++ +D D+L+ + GF +++ KW ERK+A+ L +L A+ K ++ +
Sbjct: 286 EADPWDFLDAFDVLSKM-PDGFDTNIESKKWQERKEALEGLLQLITANPKLDPKANYGAL 344
Query: 327 CRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAES 385
L+K++ D NI VA A I +A GLRT F + + P++ EK KEKKPT+ +
Sbjct: 345 VERLQKVLEKDANINVAALAANCITGIANGLRTKFQPFAVSVTPIIFEKFKEKKPTLRDP 404
Query: 386 LTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFC-IETSSKAAVLKVHK 444
L + A+ NL V E V ++ P +++ T ++ C ++ +S+ K K
Sbjct: 405 LVACIDAV--VATTNLEAVGEIVLAALGKPNPSIKTQTDLFLQRCFMKLNSQTMPKKTLK 462
Query: 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496
+P ++ D EVR+A+++ + A+ +++G +P S++ L D+ + L
Sbjct: 463 TLIPSLIKHSGDSDSEVREASYAAMGAMMRAIGEKP---SLQLLADIASDNL 511
|
Plays a major role in organizing microtubules and spindle poles during mitosis and meiosis in one-cell stage embryos. Required for default nucleus positioning in oocytes. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q2UCC9|STU1_ASPOR Protein stu1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=stu1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 139/336 (41%), Gaps = 44/336 (13%)
Query: 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGL----RTHF-SGSSRFLLPVLLEKLKEKKP 380
+ +L+ IT + A+ G+ + L + H S +R PVLLE+L + K
Sbjct: 46 IFESLRLAITSHHAALYAAGFSTFGHFLKRLFIQDQAHIVSAYARHFCPVLLERLGDHKE 105
Query: 381 TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440
V Q + A ++ V +V + KN P + +L W++ S +L
Sbjct: 106 RVRAQAAQIFTDLWPAASADVEHYVLEVALTGKN--PKAKETSLIWLS---NMSRNHGLL 160
Query: 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL--DDVRRNKLSE 498
+ YVP + CL D VR A S + + + R +++ +VR++ ++
Sbjct: 161 --FRSYVPSVVSCLEDADSFVRHTAKSTVVELFQGAPARAKADLTKEMTAQNVRQSIVNA 218
Query: 499 MIAGSGGDVATGTSSARVQTSGGSVPSVE------ASESSFVRKSAASMLSGK--RPVSA 550
+ A G + + T+ R + P + AS + V + A+++S RP
Sbjct: 219 VYANIGLEDHSSTARPRSRVEPRYTPCTDSHPLRSASRAEVVHQQPAAVVSSAPLRPSKE 278
Query: 551 APASKKGGPVK--PSAKKDGSGK-----------------QETSKLTEAPEDVEPSEMSL 591
A + P+K P + K G+ + +S+ EAP+ + +E S
Sbjct: 279 ATPMVEPEPIKSRPGSSKSDKGRTIAAAPEAEKAPHMETARPSSQDGEAPQPLH-AETS- 336
Query: 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQ 627
+++E L PA G+ W+ R + I+SLR+
Sbjct: 337 KQVEDLFRVLSPA-FEGRESEDNWRHREKYITSLRR 371
|
Microtubule binding protein that promotes the stabilization of dynamic microtubules. Required for mitotic spindle formation. Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1871 | ||||||
| 224115548 | 2025 | microtubule organization protein [Populu | 0.997 | 0.921 | 0.85 | 0.0 | |
| 224061471 | 2036 | microtubule organization protein [Populu | 0.997 | 0.916 | 0.850 | 0.0 | |
| 255587410 | 1992 | microtubule associated protein xmap215, | 0.975 | 0.916 | 0.853 | 0.0 | |
| 356533943 | 2035 | PREDICTED: protein MOR1-like [Glycine ma | 0.995 | 0.915 | 0.828 | 0.0 | |
| 356574625 | 2035 | PREDICTED: protein MOR1-like [Glycine ma | 0.995 | 0.915 | 0.828 | 0.0 | |
| 19912731 | 2029 | microtubule bundling polypeptide TMBP200 | 0.996 | 0.918 | 0.801 | 0.0 | |
| 449434204 | 2005 | PREDICTED: protein MOR1-like [Cucumis sa | 0.980 | 0.915 | 0.798 | 0.0 | |
| 297823359 | 1980 | hypothetical protein ARALYDRAFT_482523 [ | 0.989 | 0.934 | 0.795 | 0.0 | |
| 30686489 | 1978 | microtubule organization 1 protein [Arab | 0.989 | 0.936 | 0.789 | 0.0 | |
| 115440677 | 1997 | Os01g0816400 [Oryza sativa Japonica Grou | 0.990 | 0.927 | 0.744 | 0.0 |
| >gi|224115548|ref|XP_002317062.1| microtubule organization protein [Populus trichocarpa] gi|222860127|gb|EEE97674.1| microtubule organization protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3257 bits (8444), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1598/1880 (85%), Positives = 1724/1880 (91%), Gaps = 13/1880 (0%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLA+LC SI DPKD+R+RE PLF+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLASLCVSIFDPKDSRLREFAPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIA+L+AADADAGRYAKEVCDAI AKCLTGRPKTVEKAQA FMLW
Sbjct: 61 VADSNAPVQEKALDALIAFLRAADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQAAFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEAV+ FLD MEKAIKNKV+KAVVPAIDVMFQALSEFGAK++PPKRILKMLPELFDHQ
Sbjct: 121 VELEAVEAFLDAMEKAIKNKVSKAVVPAIDVMFQALSEFGAKVVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+IL EKMRDTMKKELE ELVNV+GTA+P+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILLEKMRDTMKKELEAELVNVTGTAKPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E +SE GPG SEE D P EIDEY+L+DPVDIL+PLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEPEGVSEVAGPGQSEEVAPDAPQEIDEYDLMDPVDILSPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRIAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR+HF
Sbjct: 301 ERKEAVAELTKLASTKRIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRSHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV--VEDVKTSVKNKVPL 418
SGSSRFLLPVLLEKLKEKKPT+ ESLTQTLQAMHKAGC NL D+ VE VKT+VKNKVPL
Sbjct: 361 SGSSRFLLPVLLEKLKEKKPTLTESLTQTLQAMHKAGCSNLADIFAVEYVKTAVKNKVPL 420
Query: 419 VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478
VRSLTLNWVTFCIETS+KA +LKVHKDYVPICME LNDGTP+VRD+AFSVLAA+AK VGM
Sbjct: 421 VRSLTLNWVTFCIETSNKAVILKVHKDYVPICMESLNDGTPDVRDSAFSVLAAVAKMVGM 480
Query: 479 RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSA 538
RPLERS+EKLDDVRR KLSEMIAGSG VA +S VQT+ GS+ SVE SESSFV+KSA
Sbjct: 481 RPLERSLEKLDDVRRKKLSEMIAGSGDGVAAVATSGTVQTARGSMSSVETSESSFVKKSA 540
Query: 539 ASMLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIES 596
ASMLSGK+P AAPA+KK P K A K DG+G+ ETS+ E PEDVEP+EMSLEEIE+
Sbjct: 541 ASMLSGKKPAPAAPANKKAAPTKSGASKKVDGAGRPETSRALEPPEDVEPAEMSLEEIET 600
Query: 597 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKN 656
RLGSLI ADT+ QLKSAVWKERLEAISSL++QVE +QN +QSVEIL+RL+C +PGW+EKN
Sbjct: 601 RLGSLIQADTISQLKSAVWKERLEAISSLKEQVEGLQNCNQSVEILIRLLCAIPGWNEKN 660
Query: 657 VQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPG 716
VQVQQQ IEVI YLA+TA+KFPKKCVVLCLLGISERVADIKTRA+AMKCLTTF+EAVGPG
Sbjct: 661 VQVQQQFIEVITYLASTASKFPKKCVVLCLLGISERVADIKTRAYAMKCLTTFTEAVGPG 720
Query: 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATR 776
F+F+RLYKIMK+HKNPKVLSEGILWMV A++DFGVSHLKLKDLIDFCKDTGLQSS AA+R
Sbjct: 721 FVFDRLYKIMKEHKNPKVLSEGILWMVLAIDDFGVSHLKLKDLIDFCKDTGLQSSVAASR 780
Query: 777 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTS 835
NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG + +PKKTVR SES +
Sbjct: 781 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGASAIPKKTVRTSESMT 840
Query: 836 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 895
VS GG D LPREDISGK TPTL+KSLESPDWKVRLESIEAVNKILEEANKRIQP GTGE
Sbjct: 841 CVSGGGLDSLPREDISGKVTPTLIKSLESPDWKVRLESIEAVNKILEEANKRIQPNGTGE 900
Query: 896 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955
LFG LRGRLYDSNKNL+M L T+G VASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC
Sbjct: 901 LFGALRGRLYDSNKNLIMTALTTIGGVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 960
Query: 956 TLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015
L LD+W+AAVHLDKM+PY+T AL ++KLGAEGRKDLFDWLSKQL+GLS FPDA HLLK
Sbjct: 961 ALNTLDSWVAAVHLDKMIPYITAALFESKLGAEGRKDLFDWLSKQLSGLSEFPDAIHLLK 1020
Query: 1016 PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ- 1074
PA AMTDKS+DVRKAAEACI EILR GQE IE+NLKDI GPALAL+LER++ Q
Sbjct: 1021 PAGSAMTDKSADVRKAAEACISEILRVCGQEMIERNLKDIHGPALALVLERVRPASVYQE 1080
Query: 1075 -------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
+SMGP+SK+SSKV K+ASNG+SKH NR+ISSRVIPTKG++PE MS+QD AVQ
Sbjct: 1081 SFESTKTISMGPSSKTSSKVGKAASNGISKHSNRSISSRVIPTKGSKPEPAMSIQDRAVQ 1140
Query: 1128 SQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQ 1187
SQALLNVKDSNKEDRERMVVRRFKFE+PR+EQIQ+LE DMMKY REDL+RRLLS DFKKQ
Sbjct: 1141 SQALLNVKDSNKEDRERMVVRRFKFEEPRMEQIQDLEGDMMKYLREDLNRRLLSLDFKKQ 1200
Query: 1188 VDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGY 1247
VDGLEMLQKALPSI +IIEVLDILL+WFVLQFCKSNTTCLLKVLEFLP LFD LRDE Y
Sbjct: 1201 VDGLEMLQKALPSIGNEIIEVLDILLKWFVLQFCKSNTTCLLKVLEFLPALFDLLRDEAY 1260
Query: 1248 SLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRT 1307
+L+ESEAA+FLPCL+EK GHNIEKVREKMREL KQI++ YSATK+ PYILEGLRSKNNRT
Sbjct: 1261 TLSESEAAIFLPCLIEKLGHNIEKVREKMRELAKQILHAYSATKSFPYILEGLRSKNNRT 1320
Query: 1308 RIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIW 1367
RIEC DLVGFLID HGAEISGQLKSLQIVASLTAERDGEIRKAALN LATGYKILGEDIW
Sbjct: 1321 RIECADLVGFLIDQHGAEISGQLKSLQIVASLTAERDGEIRKAALNALATGYKILGEDIW 1380
Query: 1368 RYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQ 1427
RY+GKLTDAQKSM+DDRFKWKVREMEK+KEG+PG+ARAALRRSVRENGSDIAEQSG+VSQ
Sbjct: 1381 RYLGKLTDAQKSMIDDRFKWKVREMEKRKEGRPGDARAALRRSVRENGSDIAEQSGEVSQ 1440
Query: 1428 SVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVC 1487
SVSGP L R+N+G EL VER IMPRAL S SGPTDWNEALDIISF SPEQSVEGMKVVC
Sbjct: 1441 SVSGPILARKNFGTQELQVERHIMPRALTSASGPTDWNEALDIISFSSPEQSVEGMKVVC 1500
Query: 1488 HELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTF 1547
HELAQAT+D EGSVMDELVKDADRLVSCLANKVA+TFDFSLTGASSRSCKYVLNTLMQTF
Sbjct: 1501 HELAQATSDEEGSVMDELVKDADRLVSCLANKVARTFDFSLTGASSRSCKYVLNTLMQTF 1560
Query: 1548 QNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF 1607
QNK LA+AV+ESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF
Sbjct: 1561 QNKTLAHAVKESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF 1620
Query: 1608 VVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQ 1667
VLINLLRPLDPSRWPSPAS E+FA RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRIL+
Sbjct: 1621 DVLINLLRPLDPSRWPSPASTETFAIRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILR 1680
Query: 1668 SIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPII 1727
SIH+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGA+IKGHLSMVPIDMKPQPII
Sbjct: 1681 SIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGASIKGHLSMVPIDMKPQPII 1740
Query: 1728 LAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGD 1787
LAYIDLNLETLAAARMLTST P GQ HWGDSAANN + AT+SA+AQLKQELAAIFKKIGD
Sbjct: 1741 LAYIDLNLETLAAARMLTSTAPVGQNHWGDSAANNSSPATHSAEAQLKQELAAIFKKIGD 1800
Query: 1788 KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPM 1847
KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKN AAGRTPSS+PM
Sbjct: 1801 KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNTAAGRTPSSLPM 1860
Query: 1848 ATPPPAALGSVVPLLQKFFP 1867
+TPPP+A P LQ P
Sbjct: 1861 STPPPSAPNVSSPDLQPLSP 1880
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061471|ref|XP_002300496.1| microtubule organization protein [Populus trichocarpa] gi|222847754|gb|EEE85301.1| microtubule organization protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3248 bits (8421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1605/1887 (85%), Positives = 1727/1887 (91%), Gaps = 20/1887 (1%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKL WEDRLLHKNWKVRNEANIDLA+LCDSI+DPKD+R+RE PLF+KT
Sbjct: 1 MSEEEKLLKEAKKLAWEDRLLHKNWKVRNEANIDLASLCDSISDPKDSRLREFAPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIA+L+AADADAGRYAKEVCDAI AKCLTGRPKTVEKAQA FMLW
Sbjct: 61 VADSNAPVQEKALDALIAFLRAADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQAAFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEAVDVFLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAK++PPKRILKMLPELFDHQ
Sbjct: 121 VELEAVDVFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKVVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+ILFEKMRDTMKKELE ELVNV GTA+P+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMKKELEAELVNVKGTAKPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E +SE VG GPSEE A+ P EIDEY+LVDPVDIL PLEK+GFW+GVKATKWS
Sbjct: 241 QDKEPEPEGVSEVVGSGPSEEVAAEAPQEIDEYDLVDPVDILGPLEKAGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRIAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNK 415
SGSSRFLLPVLLEKLKEKKPT+ E+L QTLQAMH AGCLNL D++E VKT+VKNK
Sbjct: 361 SGSSRFLLPVLLEKLKEKKPTLTEALAQTLQAMHTAGCLNLADIIEGNLRDYVKTAVKNK 420
Query: 416 VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
VPLVRSLTLNWVTFCIETS+KA +LKVHKDYVPICMECLNDGTP+VRD+AFSVLAA+AKS
Sbjct: 421 VPLVRSLTLNWVTFCIETSNKAVILKVHKDYVPICMECLNDGTPDVRDSAFSVLAAVAKS 480
Query: 476 VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
VGMRPLERS+EKLDDVRR KLSEMIAGSG V SS VQ GS+ SVE SE SFV+
Sbjct: 481 VGMRPLERSLEKLDDVRRKKLSEMIAGSGDGVPAVASSGPVQAVRGSMSSVETSEGSFVK 540
Query: 536 KSAASMLSGKRPVSAAPASKKGGPVKP--SAKKDGSGKQETSKLTEAPEDVEPSEMSLEE 593
KSAASMLSGKRP AA A+KK P K S K DG+G+ E+S+ E PEDVEP+EMSLEE
Sbjct: 541 KSAASMLSGKRPAPAAAANKKAAPTKSGVSKKGDGAGRAESSRAIEPPEDVEPAEMSLEE 600
Query: 594 IESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWS 653
IE+RLGSLI ADTV QLKSAVWKERLEAISS + QVE +QNLDQSVEIL+RL+C +PGW+
Sbjct: 601 IETRLGSLIQADTVSQLKSAVWKERLEAISSFKLQVEGLQNLDQSVEILIRLLCAIPGWN 660
Query: 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713
EKNVQVQQQVIEVI YLA+TA+KFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV
Sbjct: 661 EKNVQVQQQVIEVITYLASTASKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 720
Query: 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773
GPGF+F+RLYKIMK+HKNPKVLSEGI+WMVSA++DFGVSHLKLKDLIDFCKDTGLQSS A
Sbjct: 721 GPGFVFDRLYKIMKEHKNPKVLSEGIIWMVSAIDDFGVSHLKLKDLIDFCKDTGLQSSVA 780
Query: 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASE 832
A+RNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEY+KNPFEG + PKKTVR SE
Sbjct: 781 ASRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYDKNPFEGASAAPKKTVRTSE 840
Query: 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892
STSSVS GG D LPREDISGK TPTL+KSLESPDWKVRLESIEAVNKILEEANKRIQP G
Sbjct: 841 STSSVSGGGLDSLPREDISGKITPTLIKSLESPDWKVRLESIEAVNKILEEANKRIQPTG 900
Query: 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 952
TGELFG LRGRLYDSNKNL+M L T+G VASAMGPAVEKSSKGVLSDILKCLGDNKKHM
Sbjct: 901 TGELFGALRGRLYDSNKNLIMTALTTIGGVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 960
Query: 953 RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012
RECTL LD+W+AAVHLDKMVPY+T AL + KLGAEGRKDLFDWLSKQL+G S F DA H
Sbjct: 961 RECTLNTLDSWVAAVHLDKMVPYITAALIETKLGAEGRKDLFDWLSKQLSGSSEFSDAIH 1020
Query: 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072
LLKPAS AMTDKSSDVRKAAEACI EILR GQE IEKNLKDIQGPALAL+LER++ G
Sbjct: 1021 LLKPASSAMTDKSSDVRKAAEACISEILRVCGQEMIEKNLKDIQGPALALVLERVRPAGG 1080
Query: 1073 SQ------------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMS 1120
Q +SMGP+SK+S KV K+ASNG+SKH NR+IS+RVIP KG++PE MS
Sbjct: 1081 FQGLSFESFESTKTISMGPSSKTSVKVGKAASNGISKHANRSISARVIPMKGSKPEPTMS 1140
Query: 1121 VQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLL 1180
QD AVQSQALLNVKDSNKEDRERMVVRRFKFE+PR+EQ+Q+LE+DMMKYFREDL+RRLL
Sbjct: 1141 FQDRAVQSQALLNVKDSNKEDRERMVVRRFKFEEPRMEQVQDLESDMMKYFREDLNRRLL 1200
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
S DFKKQVDGLEML KALPSI K+IIEVLDILLRWFVLQFCKSNTTCLLKVLEFLP+LFD
Sbjct: 1201 SPDFKKQVDGLEMLHKALPSIGKEIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPDLFD 1260
Query: 1241 TLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 1300
LRDE Y+L+ESEAA+FLPCL+EK GHNIEKVREKMRELTKQIV YSA K+ PYILEGL
Sbjct: 1261 RLRDEAYTLSESEAAIFLPCLIEKLGHNIEKVREKMRELTKQIVQAYSAAKSFPYILEGL 1320
Query: 1301 RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYK 1360
RSKNNRTRIEC DLVGFLIDHHGAEISGQLKSLQIVASLTAERDGE RKAALNTLATGYK
Sbjct: 1321 RSKNNRTRIECADLVGFLIDHHGAEISGQLKSLQIVASLTAERDGETRKAALNTLATGYK 1380
Query: 1361 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAE 1420
ILGEDIWR++GKLTDAQKSM+DDRFKWKVREMEK+KEG+PG+ARAALRRSVRENGSDIAE
Sbjct: 1381 ILGEDIWRFLGKLTDAQKSMIDDRFKWKVREMEKRKEGRPGDARAALRRSVRENGSDIAE 1440
Query: 1421 QSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSV 1480
QSG++SQSVSGP + R+NYG ELH+E +MPRAL SV+GP DWNEALDIISFGSPEQSV
Sbjct: 1441 QSGELSQSVSGPIIARKNYGTQELHMEGHMMPRALVSVNGPADWNEALDIISFGSPEQSV 1500
Query: 1481 EGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVL 1540
EGMKVVCHELAQATND EGS MDELVKDAD+LVSCLANKV++TFDFSLTGASSR+CKYVL
Sbjct: 1501 EGMKVVCHELAQATNDAEGSAMDELVKDADKLVSCLANKVSRTFDFSLTGASSRACKYVL 1560
Query: 1541 NTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDN 1600
NTLMQTFQNK LAYAV+ESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDN
Sbjct: 1561 NTLMQTFQNKILAYAVKESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDN 1620
Query: 1601 ADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDV 1660
ADRTSSFVVLINLLRPLDP+RWPSPAS E+FA RNQ+FSDLVVKCLIKLTKVLQ+TIYDV
Sbjct: 1621 ADRTSSFVVLINLLRPLDPTRWPSPASAETFAIRNQKFSDLVVKCLIKLTKVLQTTIYDV 1680
Query: 1661 DLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPID 1720
DLDRILQSIH+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPID
Sbjct: 1681 DLDRILQSIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPID 1740
Query: 1721 MKPQPIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAA 1780
MKPQPIILAYIDLNLETLAAARMLTST P GQ HWGDSAANN + A +SA+AQLKQELAA
Sbjct: 1741 MKPQPIILAYIDLNLETLAAARMLTSTAPVGQNHWGDSAANNSSPAAHSAEAQLKQELAA 1800
Query: 1781 IFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGR 1840
IFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKN AAGR
Sbjct: 1801 IFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNTAAGR 1860
Query: 1841 TPSSVPMATPPPAALGSVVPLLQKFFP 1867
TPSS+P++TPPP+AL P LQ P
Sbjct: 1861 TPSSLPISTPPPSALNVSSPDLQPLSP 1887
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255587410|ref|XP_002534264.1| microtubule associated protein xmap215, putative [Ricinus communis] gi|223525620|gb|EEF28119.1| microtubule associated protein xmap215, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 3246 bits (8415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1596/1871 (85%), Positives = 1706/1871 (91%), Gaps = 46/1871 (2%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAA CDSITDPKD R+RE GPLF+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAAFCDSITDPKDPRLREFGPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIA+L+AADADAGRYAKEVCDAI AKCLTGRPKTVEKAQA FMLW
Sbjct: 61 VADSNAPVQEKALDALIAFLRAADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQASFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEAVDVFLD MEKAIKNKVAKAVVPAIDVMFQALSEFGAKI+PPKRILKMLPELFDHQ
Sbjct: 121 VELEAVDVFLDAMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+ILFEKMRDTMKKELE ELVNV+GTA+P+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMKKELEAELVNVTGTAKPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E +SE GPG SEE+ AD P EIDEYELVDPVDILTPLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEPEAVSEVAGPGQSEEAAADAPQEIDEYELVDPVDILTPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRIAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVR 420
S SSRFLLPVLLEKLKEKKP + ESL QTLQA+HK+GCL+LVD+VEDVKT+VKNKVPLVR
Sbjct: 361 SASSRFLLPVLLEKLKEKKPALTESLAQTLQALHKSGCLSLVDIVEDVKTAVKNKVPLVR 420
Query: 421 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480
SLTLNWVTFCIETS+KA +LKVHKDYVPICME LNDGTP+VRD+AFS LAAIAKSVGMRP
Sbjct: 421 SLTLNWVTFCIETSNKAVILKVHKDYVPICMESLNDGTPDVRDSAFSALAAIAKSVGMRP 480
Query: 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540
LERS+EKLDDVRR KLSEMI GSGG+ + GTSSA VQ GSV S EASE SFVR+SAAS
Sbjct: 481 LERSLEKLDDVRRKKLSEMIGGSGGNASGGTSSATVQAVSGSVSSTEASEGSFVRRSAAS 540
Query: 541 MLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598
MLSGK+P+ AAPA+KKGGP K K DG+G+ ETSK E PEDVEP+EMSLEEIESRL
Sbjct: 541 MLSGKKPLPAAPANKKGGPTKSGTNKKGDGAGRTETSKAIEPPEDVEPAEMSLEEIESRL 600
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658
GSLI A+TV QLKS VWKERLEAISSL+QQVE +Q LDQSVEIL+RL+C +PGW+EKNVQ
Sbjct: 601 GSLIQAETVSQLKSTVWKERLEAISSLKQQVEGLQGLDQSVEILIRLLCAIPGWNEKNVQ 660
Query: 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
VQQQ+IEVI YLA+TATKFPKKCVVLCLLG SERVADIKTRAHAMKCLTTFS
Sbjct: 661 VQQQMIEVITYLASTATKFPKKCVVLCLLGTSERVADIKTRAHAMKCLTTFS-------- 712
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
VEDFGVS LKLKDLIDFCKD GLQSS AA+RNA
Sbjct: 713 ---------------------------VEDFGVSLLKLKDLIDFCKDIGLQSSVAASRNA 745
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTSSV 837
TIKLLGALHK+VGPDIKGFL+DVKPALLSALDAEY+KNPFEG + PKKTVRASES SSV
Sbjct: 746 TIKLLGALHKYVGPDIKGFLSDVKPALLSALDAEYDKNPFEGASAAPKKTVRASESMSSV 805
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
S+GG D LPRED+SGK TPTL+KS+ESPDWKVRLESIEAVNKI+EEANKRIQP GTGELF
Sbjct: 806 SAGGLDSLPREDVSGKVTPTLLKSMESPDWKVRLESIEAVNKIIEEANKRIQPTGTGELF 865
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
G LRGRLYDSNKNLVMATL T+G VASAMGPAVEKSSKG+L+DILKCLGDNKKHMREC L
Sbjct: 866 GALRGRLYDSNKNLVMATLTTIGGVASAMGPAVEKSSKGILADILKCLGDNKKHMRECAL 925
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
T +D+WLAAVHLDKM+PY+ TAL DAKLGAEGRKDLFDWLS+QL+GLS F DA HLLKPA
Sbjct: 926 TTIDSWLAAVHLDKMIPYIATALIDAKLGAEGRKDLFDWLSRQLSGLSDFSDAVHLLKPA 985
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
AMTDKSSDVRKAAEACI E+LR GQET+EKNLKD+ GPALAL+LER+K GA Q
Sbjct: 986 GSAMTDKSSDVRKAAEACITEVLRVSGQETVEKNLKDLHGPALALVLERVKPYGAFQESF 1045
Query: 1075 -----VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQ 1129
+SMGPTSK+++KV KSA+NGV KH NR SSR IPTKG+R E +MSVQD AVQSQ
Sbjct: 1046 DSAKTISMGPTSKTNAKVGKSATNGVPKHANRITSSRAIPTKGSRSEPMMSVQDRAVQSQ 1105
Query: 1130 ALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVD 1189
ALLNVKDSNKEDRERMVVRRFKFE+ RIEQIQ+LENDMMKYFREDLHRRLLS DFKKQVD
Sbjct: 1106 ALLNVKDSNKEDRERMVVRRFKFEELRIEQIQDLENDMMKYFREDLHRRLLSADFKKQVD 1165
Query: 1190 GLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSL 1249
GLEMLQKALPSI K++IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD LRDE Y+L
Sbjct: 1166 GLEMLQKALPSIAKELIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDMLRDEAYTL 1225
Query: 1250 TESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRI 1309
TESEAA+FLPCL+EK GHNIEKVREKMRELTKQIV+ YSA+KT PYILEGLRSKNNRTRI
Sbjct: 1226 TESEAAIFLPCLIEKLGHNIEKVREKMRELTKQIVHAYSASKTFPYILEGLRSKNNRTRI 1285
Query: 1310 ECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRY 1369
E DLVGFLIDHH AEISGQLKSLQIVASLTAERDGE RKAALNTLATGYKILGEDIWRY
Sbjct: 1286 ESADLVGFLIDHHVAEISGQLKSLQIVASLTAERDGETRKAALNTLATGYKILGEDIWRY 1345
Query: 1370 VGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSV 1429
VGKLTDAQKSMLDDRFKWKVREMEK+KEG+PG++RAALRRSVRENG D+AEQSG+VSQSV
Sbjct: 1346 VGKLTDAQKSMLDDRFKWKVREMEKRKEGRPGDSRAALRRSVRENGFDLAEQSGEVSQSV 1405
Query: 1430 SGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHE 1489
SGPT +R+NY ELH++R IMP A+ SVSGPTDWNEALDIISFGSPEQSVEGMKVVCHE
Sbjct: 1406 SGPTFLRKNYSPHELHMDRQIMPHAVTSVSGPTDWNEALDIISFGSPEQSVEGMKVVCHE 1465
Query: 1490 LAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQN 1549
LAQAT DPEGS MDELVKDADRLVSCLA+KVAKTFDFSLTGASSRSCKYVLNTLMQTFQN
Sbjct: 1466 LAQATGDPEGSAMDELVKDADRLVSCLASKVAKTFDFSLTGASSRSCKYVLNTLMQTFQN 1525
Query: 1550 KRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVV 1609
KRLA+AV+ESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVV
Sbjct: 1526 KRLAHAVKESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVV 1585
Query: 1610 LINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSI 1669
LINLLRP+DPSRWPS AS+E+FA RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRILQSI
Sbjct: 1586 LINLLRPVDPSRWPSSASSETFAIRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSI 1645
Query: 1670 HVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILA 1729
H+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILA
Sbjct: 1646 HIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILA 1705
Query: 1730 YIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQ 1789
YIDLNLETLAAARMLTSTGP GQTHWGDSAANNP+SAT+SADAQLKQELAAIFKKIGDKQ
Sbjct: 1706 YIDLNLETLAAARMLTSTGPVGQTHWGDSAANNPSSATHSADAQLKQELAAIFKKIGDKQ 1765
Query: 1790 TCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMAT 1849
TCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSS+PM+T
Sbjct: 1766 TCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSLPMST 1825
Query: 1850 PPPAALGSVVP 1860
PPP+AL + P
Sbjct: 1826 PPPSALTASSP 1836
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533943|ref|XP_003535517.1| PREDICTED: protein MOR1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3149 bits (8165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1564/1888 (82%), Positives = 1695/1888 (89%), Gaps = 25/1888 (1%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRL HKNWKVRNEANIDLA+LCDSITDPKD+RIRE G F+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLFHKNWKVRNEANIDLASLCDSITDPKDSRIREFGHFFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIAYL+AADADA RY KEVCDA+ AKCLTGRPKTVEKAQAVF+LW
Sbjct: 61 VADSNAPVQEKALDALIAYLRAADADASRYGKEVCDAVVAKCLTGRPKTVEKAQAVFLLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
+ELEAVD FLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAKI+PPKRILKMLPELFDHQ
Sbjct: 121 IELEAVDAFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKIVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKD VK+ILFEKMRDTMKKELE ELVNV+GTA+PTRKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDSVKSILFEKMRDTMKKELEAELVNVTGTAKPTRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE QE +SE VGPGP EES D P EIDEYELVDPVDILTPLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEQEAVSEVVGPGPCEESGNDAPQEIDEYELVDPVDILTPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRI+PGDF+EVCRTLKKLITDVNIAVAVEA+QAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRISPGDFSEVCRTLKKLITDVNIAVAVEAVQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNK 415
S SSRFLLPVLLEKLKEKKP +AE+L QTLQAMHKAGC++L+D+VE VKT+ KNK
Sbjct: 361 SASSRFLLPVLLEKLKEKKPALAEALMQTLQAMHKAGCISLIDIVEGRFPPYVKTATKNK 420
Query: 416 VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
VPLVRSLTL WVTFCIETS+K + KVHKDYVPICMECLNDGTPEVRDAAFS LA IAKS
Sbjct: 421 VPLVRSLTLTWVTFCIETSNKVVITKVHKDYVPICMECLNDGTPEVRDAAFSALAGIAKS 480
Query: 476 VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
VGMRPLERS+EKLDDVRR KLSEMI+GS V +S+A VQ + S S E SES V+
Sbjct: 481 VGMRPLERSLEKLDDVRRKKLSEMISGSEDAVPGASSAASVQNTRVSASSAETSESVLVK 540
Query: 536 KSAASMLSGKRPVSAAPASKKGGPVK--PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEE 593
+SAA MLSGKRPV + PA KK G VK + K DG + + K E PEDVEP+EMSLEE
Sbjct: 541 RSAAGMLSGKRPVQSVPAVKKVGVVKLGTNKKTDGVPQVKALKSVEPPEDVEPTEMSLEE 600
Query: 594 IESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWS 653
IESR+GSLI +DT+ LKSAVWKERLEAISSL+QQVE +Q+LDQSVEIL+RLVC LPGW
Sbjct: 601 IESRIGSLIESDTITLLKSAVWKERLEAISSLKQQVEGLQDLDQSVEILIRLVCTLPGWG 660
Query: 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713
EKNVQVQQQVIEVI ++++TATKFPKKCVVLCL G+SERVADIKTRAHAMKCL+T SEAV
Sbjct: 661 EKNVQVQQQVIEVITHISSTATKFPKKCVVLCLSGLSERVADIKTRAHAMKCLSTLSEAV 720
Query: 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773
GPGFIFERLYKIMK+HKNPKVLSEGILWMVSAVEDFGVSH+KLKDLIDF K+ GLQSS A
Sbjct: 721 GPGFIFERLYKIMKEHKNPKVLSEGILWMVSAVEDFGVSHIKLKDLIDFLKEIGLQSSNA 780
Query: 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASE 832
ATRNA+IK LG LH+FVGPDIKGFL DVKPALLSALD EYEKNPFEG + V K+TVRA +
Sbjct: 781 ATRNASIKFLGVLHRFVGPDIKGFLTDVKPALLSALDTEYEKNPFEGASAVTKRTVRAKD 840
Query: 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892
S+S+V +GG D LPREDISGK +PTL+KSLESPDWKVR+ES++AVNKILEEANKRIQ G
Sbjct: 841 SSSTVVAGGLDSLPREDISGKISPTLLKSLESPDWKVRMESVDAVNKILEEANKRIQATG 900
Query: 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 952
TGELFG LRGRL DSNKN+VMA+L +G VASAMG AVEK+SKG+LSDILKCLGDNKKHM
Sbjct: 901 TGELFGALRGRLLDSNKNIVMASLTAIGNVASAMGQAVEKASKGILSDILKCLGDNKKHM 960
Query: 953 RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012
REC L LDAWLAAVHLDKMVPY+ AL D+KLGAEGRKDLFDWLS+QL+GLS F +AA
Sbjct: 961 RECVLNTLDAWLAAVHLDKMVPYIAIALMDSKLGAEGRKDLFDWLSRQLSGLSSFAEAAQ 1020
Query: 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072
LLKPAS AMTDKSSDVRKA+EACI EILR G E IEK +KDI GPAL LI+E++K GA
Sbjct: 1021 LLKPASSAMTDKSSDVRKASEACINEILRVSGHEMIEKMVKDIHGPALTLIVEKLKPYGA 1080
Query: 1073 SQ------------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMS 1120
Q VS+G SK +K KS +NGVSKHGNRA+SSRV+ TKGA+ ESI S
Sbjct: 1081 FQGTFFESFESGRAVSVGAISK--AKAGKSTANGVSKHGNRAVSSRVVATKGAKSESI-S 1137
Query: 1121 VQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLL 1180
VQD AVQSQALLN+KDSNKEDRERMVVRRFKFEDPRIEQIQ+LENDMMKYFREDLHRRLL
Sbjct: 1138 VQDIAVQSQALLNIKDSNKEDRERMVVRRFKFEDPRIEQIQDLENDMMKYFREDLHRRLL 1197
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
S DFKKQVDGLEMLQKALPSI K++IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPEL D
Sbjct: 1198 SADFKKQVDGLEMLQKALPSIAKEVIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELLD 1257
Query: 1241 TLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 1300
TL+DEGYSLTESE AVFLPCLVEK GHNIEKVREKMRELTKQ V YSA K PYILEGL
Sbjct: 1258 TLKDEGYSLTESEGAVFLPCLVEKLGHNIEKVREKMRELTKQFVAIYSACKCFPYILEGL 1317
Query: 1301 RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYK 1360
RSKNNRTRIEC DLVGF+IDHHGAEISGQLKSLQIVASLTAERDGE RKAALNTLATGYK
Sbjct: 1318 RSKNNRTRIECADLVGFIIDHHGAEISGQLKSLQIVASLTAERDGETRKAALNTLATGYK 1377
Query: 1361 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAE 1420
ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARA RRSVRENGSD+AE
Sbjct: 1378 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAISRRSVRENGSDVAE 1437
Query: 1421 QSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSV 1480
QSG++++S++GP ++R+NYG + +++R +MPR + SGPTDWNEALDIISFGSPEQSV
Sbjct: 1438 QSGEMTRSLAGP-ILRKNYGQPDSNIDRQLMPRPMTVASGPTDWNEALDIISFGSPEQSV 1496
Query: 1481 EGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLT-GASSRSCKYV 1539
+GMKV+CHELAQAT+DPEGS MDELVKDADRLVSCLANKVA+TFDFSLT GASSRSCKYV
Sbjct: 1497 DGMKVICHELAQATSDPEGSAMDELVKDADRLVSCLANKVARTFDFSLTGGASSRSCKYV 1556
Query: 1540 LNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILD 1599
LNTLMQTFQNKRLA+AV+ESTLDSLITELLLWLLD+RVPHMDDGSQLLKALNVLMLKILD
Sbjct: 1557 LNTLMQTFQNKRLAHAVKESTLDSLITELLLWLLDDRVPHMDDGSQLLKALNVLMLKILD 1616
Query: 1600 NADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYD 1659
NADRTSSFVVLINLLRPLD SRWPSPASNES A+RNQ+FSDLVVKCLIKLTKVLQSTIYD
Sbjct: 1617 NADRTSSFVVLINLLRPLDSSRWPSPASNESLASRNQKFSDLVVKCLIKLTKVLQSTIYD 1676
Query: 1660 VDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI 1719
VDLDRILQSIH+YLQ+LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI
Sbjct: 1677 VDLDRILQSIHLYLQDLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI 1736
Query: 1720 DMKPQPIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELA 1779
D KPQPIILAYI+LNLETLAAARMLT++GPGGQ HWGDSA NN S T+SADAQLKQELA
Sbjct: 1737 DAKPQPIILAYIELNLETLAAARMLTASGPGGQNHWGDSATNNSASGTHSADAQLKQELA 1796
Query: 1780 AIFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG 1839
AIFKKIG+KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG
Sbjct: 1797 AIFKKIGEKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG 1856
Query: 1840 RTPSSVPMATPPPAALGSVVPLLQKFFP 1867
RTPSS+PM TPPPA+L P P
Sbjct: 1857 RTPSSLPMPTPPPASLNISSPDFAPLSP 1884
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574625|ref|XP_003555446.1| PREDICTED: protein MOR1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3130 bits (8114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1565/1888 (82%), Positives = 1698/1888 (89%), Gaps = 25/1888 (1%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRL HKNWKVRNEANIDLA+LCDSITDPKD+RIRE G F+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLFHKNWKVRNEANIDLASLCDSITDPKDSRIREFGHFFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
V DSNAPVQ+KALDALIAYL+AADADA RY KEVCDA+ AKCLTGRPKTVEKAQAVF+LW
Sbjct: 61 VTDSNAPVQEKALDALIAYLRAADADAARYGKEVCDAVVAKCLTGRPKTVEKAQAVFLLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
+ELEAVD FLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAKI+PPKRILKMLPELFDHQ
Sbjct: 121 IELEAVDAFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKIVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKD VK+ILFEKMRDTMKKELE ELVNV+GTA+PTRKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDSVKSILFEKMRDTMKKELEAELVNVTGTAKPTRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE QE +SE VGPGPSEES D P EIDEYELVDPVDIL PLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEQEAVSEVVGPGPSEESGNDAPQEIDEYELVDPVDILIPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRI+PGDF+EVCRTLKKLITDVNIAVAVEA+QAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRISPGDFSEVCRTLKKLITDVNIAVAVEAVQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNK 415
S SSRFLLPVLLEKLKEKKP +AE+LTQTLQAMHKAGC++L+D+VE VKT+ KNK
Sbjct: 361 SSSSRFLLPVLLEKLKEKKPALAEALTQTLQAMHKAGCISLIDIVEGRFPSYVKTATKNK 420
Query: 416 VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
VPLVRSLTL WVTFCIETS+K ++KVHKDYVPICMECLNDGTPEVRDAAFS LA IAKS
Sbjct: 421 VPLVRSLTLTWVTFCIETSNKGVIMKVHKDYVPICMECLNDGTPEVRDAAFSALAGIAKS 480
Query: 476 VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
VGMRPLERS+EKLDDVRR KLSEMI+GS V +S+A VQ + S S E+SES+FV+
Sbjct: 481 VGMRPLERSLEKLDDVRRKKLSEMISGSEDAVPGASSAASVQNTRVSASSAESSESAFVK 540
Query: 536 KSAASMLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEE 593
+SAA MLSGKRPV + P +KKGG VK K DG + + SK E PEDVEP+EMSLEE
Sbjct: 541 RSAAGMLSGKRPVQSVPVAKKGGVVKSGTNKKTDGVPQVKASKSVEPPEDVEPTEMSLEE 600
Query: 594 IESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWS 653
IESR+GSLI +DT+ QLKSAVWKERLEAISSL+QQVE +Q+LDQSVEIL+RLVC LPGWS
Sbjct: 601 IESRIGSLIQSDTITQLKSAVWKERLEAISSLKQQVEGLQDLDQSVEILIRLVCTLPGWS 660
Query: 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713
EKNVQVQQQVIEVI ++ +TATKFPKKCVVLCL G+SERVADIKTRAHAMKCL+T SEAV
Sbjct: 661 EKNVQVQQQVIEVITHIGSTATKFPKKCVVLCLSGLSERVADIKTRAHAMKCLSTLSEAV 720
Query: 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773
GPGFIFERLYKI+K+HKNPKVLSEGILWMVSAVEDFGVSH+KLKDLIDF K+ GLQSS A
Sbjct: 721 GPGFIFERLYKILKEHKNPKVLSEGILWMVSAVEDFGVSHIKLKDLIDFLKEIGLQSSNA 780
Query: 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASE 832
ATRNA+IK LG LH+FVGPDIKGFL DVKPALLSALD EYEKNPFEG + V K+TVRAS+
Sbjct: 781 ATRNASIKFLGVLHRFVGPDIKGFLTDVKPALLSALDTEYEKNPFEGASAVTKRTVRASD 840
Query: 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892
S+S+ +GG D LPREDISGK TPTL+KSLESPDWKVR+ES++AVNKILEEANKRIQ G
Sbjct: 841 SSSTAVAGGLDSLPREDISGKITPTLLKSLESPDWKVRMESVDAVNKILEEANKRIQATG 900
Query: 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 952
TGELFG LRGRL DSNKN+VMA+L T+G VASAMG AVEK+SKG+LSD+LKCLGDNKKHM
Sbjct: 901 TGELFGALRGRLVDSNKNIVMASLTTIGNVASAMGQAVEKASKGILSDVLKCLGDNKKHM 960
Query: 953 RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012
REC L LDAWLAAVHLDKMV Y+ AL D+KLGAEGRKDLFDWLSKQL+ LS F +AA
Sbjct: 961 RECVLNTLDAWLAAVHLDKMVSYIAIALMDSKLGAEGRKDLFDWLSKQLSELSSFAEAAQ 1020
Query: 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072
LLKPAS AMTDKSSDVRKA+EACI EILR G E IEK +KDI GPAL L+LE++K GA
Sbjct: 1021 LLKPASSAMTDKSSDVRKASEACINEILRVSGHEMIEKMVKDIHGPALTLVLEKLKPYGA 1080
Query: 1073 SQ------------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMS 1120
Q VS+G TSK +K KS +NGVSKHGNRA+SSRV+ TKG + ESI S
Sbjct: 1081 FQGTFFESFESGRAVSVGATSK--AKAGKSTANGVSKHGNRAVSSRVVATKGTKSESI-S 1137
Query: 1121 VQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLL 1180
VQD AVQSQALLN+KDSNKEDRERMVVRRFKFEDPRIEQIQ+LENDMMKYFREDLHRRLL
Sbjct: 1138 VQDIAVQSQALLNIKDSNKEDRERMVVRRFKFEDPRIEQIQDLENDMMKYFREDLHRRLL 1197
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
S DFKKQVDGLEMLQKALPSI K++IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPEL D
Sbjct: 1198 SADFKKQVDGLEMLQKALPSIAKEVIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELLD 1257
Query: 1241 TLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 1300
TL+DEGYSLTESE AVFLPCLVEK GHNIEKVREKMRELTKQ V YSA+K PYILEGL
Sbjct: 1258 TLKDEGYSLTESEVAVFLPCLVEKLGHNIEKVREKMRELTKQFVAIYSASKCFPYILEGL 1317
Query: 1301 RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYK 1360
RSKNNRTRIEC DLVGF+IDHHGAEISGQLKSLQIVASLTAERDGE RKAALN LATGYK
Sbjct: 1318 RSKNNRTRIECADLVGFIIDHHGAEISGQLKSLQIVASLTAERDGETRKAALNALATGYK 1377
Query: 1361 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAE 1420
ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARA LRRSVRENGSD+AE
Sbjct: 1378 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARANLRRSVRENGSDVAE 1437
Query: 1421 QSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSV 1480
QSG++++S++GP ++R+NY + +++R +MP + SGPTDWNEALDIISFGSPEQSV
Sbjct: 1438 QSGEMARSLTGP-MLRKNYAQPDSNIDRQLMPHPMTVASGPTDWNEALDIISFGSPEQSV 1496
Query: 1481 EGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLT-GASSRSCKYV 1539
+GMKVVCHELAQAT+DPEGS MDELVKDADRLVSCLANKVA+TFDFSLT GASSRSCKYV
Sbjct: 1497 DGMKVVCHELAQATSDPEGSAMDELVKDADRLVSCLANKVARTFDFSLTGGASSRSCKYV 1556
Query: 1540 LNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILD 1599
LNTLMQTFQNKRLA+AV+ESTLDSLITELLLWLLD+RVPHMDDGSQLLKALNVLMLKILD
Sbjct: 1557 LNTLMQTFQNKRLAHAVKESTLDSLITELLLWLLDDRVPHMDDGSQLLKALNVLMLKILD 1616
Query: 1600 NADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYD 1659
NADRTSSFVVLINLLRPLD SRWPSPA NES A+RNQ+FSDLVVKCLIKLTKVLQSTIYD
Sbjct: 1617 NADRTSSFVVLINLLRPLDSSRWPSPALNESLASRNQKFSDLVVKCLIKLTKVLQSTIYD 1676
Query: 1660 VDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI 1719
VDLDRILQSIH+YLQ+LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI
Sbjct: 1677 VDLDRILQSIHLYLQDLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI 1736
Query: 1720 DMKPQPIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELA 1779
D KPQPIILAYI+LNLETLAAARMLT++GPGGQ HWGDSA NN S T+SADAQLKQELA
Sbjct: 1737 DAKPQPIILAYIELNLETLAAARMLTASGPGGQNHWGDSATNNSASGTHSADAQLKQELA 1796
Query: 1780 AIFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG 1839
AIFKKIG+KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG
Sbjct: 1797 AIFKKIGEKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAG 1856
Query: 1840 RTPSSVPMATPPPAALGSVVPLLQKFFP 1867
RTPSS+PM TPPPA+L P P
Sbjct: 1857 RTPSSLPMPTPPPASLNISSPDFAPLSP 1884
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|19912731|dbj|BAB88648.1| microtubule bundling polypeptide TMBP200 [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 3074 bits (7969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1507/1880 (80%), Positives = 1685/1880 (89%), Gaps = 16/1880 (0%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSE+EKLLKEAKKLPW++R HKNWKVRN+ANIDLAA+CDSITDPKD R+RE GPLF+KT
Sbjct: 1 MSEDEKLLKEAKKLPWDERFAHKNWKVRNDANIDLAAVCDSITDPKDPRLREFGPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALI YLKAADADAGRYAKEVCDA+ KCLTGRPKTVEKAQ VF+LW
Sbjct: 61 VADSNAPVQEKALDALICYLKAADADAGRYAKEVCDAVVVKCLTGRPKTVEKAQMVFLLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
+ELEAV+ FLD MEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ
Sbjct: 121 IELEAVEAFLDAMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWI K+ VK+ILFEKMRDTMKKELE ELVNV+GTA+PTRKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWISKETVKSILFEKMRDTMKKELEAELVNVTGTAKPTRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E++S+ V GPSEES ADVP IDEY+LVDPVDIL PLEK+GFWEGVKA KWS
Sbjct: 241 QDKEPELEVVSDAVAAGPSEESAADVPQRIDEYDLVDPVDILIPLEKTGFWEGVKAAKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTK+IAPGDF E+CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKKIAPGDFAEICRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVR 420
SGSSRFLLPVLLEKLKEKKPT+ ++LTQTLQAMHK+GCL L D+VEDVKT+ KNKVPLVR
Sbjct: 361 SGSSRFLLPVLLEKLKEKKPTLTDALTQTLQAMHKSGCLILTDIVEDVKTATKNKVPLVR 420
Query: 421 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480
SLTLNWVTFCIETS+KA +LK HK+YVPICME LNDGTPEVRDAAFS LAA+AKSVGMRP
Sbjct: 421 SLTLNWVTFCIETSNKAVILKAHKEYVPICMESLNDGTPEVRDAAFSALAAVAKSVGMRP 480
Query: 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540
LE+S+EKLDDVR+ KLSEMI GSGGD + +SS V +SGG + S +AS S V++SAAS
Sbjct: 481 LEKSLEKLDDVRKKKLSEMIGGSGGDPVSTSSSGAVPSSGGIMSSTQASTGSLVKRSAAS 540
Query: 541 MLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598
MLSGK+PV AAP SKKG K K DG+ + + SK E EDVEP+EMSLEEIES+L
Sbjct: 541 MLSGKKPVQAAPPSKKGASAKSGTNKRGDGATQLKASKPVEV-EDVEPAEMSLEEIESKL 599
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658
GSLI +T+ QLKSAVWKERLEAISS ++QVEA++ LD SVEILVRL+C +PGWSEKNVQ
Sbjct: 600 GSLIQPETITQLKSAVWKERLEAISSFKEQVEALKELDPSVEILVRLLCAVPGWSEKNVQ 659
Query: 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
VQQ VI++IN++A+TA+K+PKKCVVLCL G+SERVADIKTRA AMKCLTTF EAVGPGF+
Sbjct: 660 VQQLVIDIINHIASTASKYPKKCVVLCLQGVSERVADIKTRAQAMKCLTTFCEAVGPGFV 719
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
FERLYKIMK+HKNPKVLSEGILWMV+AV+DFGVSHLKLKDLIDFCKDTGLQSSAAATRNA
Sbjct: 720 FERLYKIMKEHKNPKVLSEGILWMVTAVDDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 779
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTSSV 837
TIKL+GALHKFVGPDIKGFL+DVKPAL+SALDAEY+KNPFEG +V PKKTV+ S++ S+
Sbjct: 780 TIKLIGALHKFVGPDIKGFLSDVKPALISALDAEYDKNPFEGASVAPKKTVKTSDA-PSL 838
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
SSGG D LPREDISGK TP L+K LES DWK RLESIE VNKILEEANKRIQP GTGELF
Sbjct: 839 SSGGLDSLPREDISGKITPALLKGLESSDWKARLESIETVNKILEEANKRIQPTGTGELF 898
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
G LRGRL SNKNLV+ATL T+G VASAMGPAVEKSSKG+LSDILKCLGDNKKHMRECTL
Sbjct: 899 GALRGRLCYSNKNLVIATLSTVGGVASAMGPAVEKSSKGILSDILKCLGDNKKHMRECTL 958
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
LD+WLAAVHLDKMVPY+T ALTDAKLGAEGRKDLFDWLSKQLTG+ FPDA HLLKP
Sbjct: 959 NTLDSWLAAVHLDKMVPYITGALTDAKLGAEGRKDLFDWLSKQLTGMKEFPDAVHLLKPV 1018
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
+ AMTDKS+DVRKAAEAC E+LR GQE + KNLKDIQGPALA+++ER++ G Q
Sbjct: 1019 ASAMTDKSADVRKAAEACFGELLRVCGQEMVSKNLKDIQGPALAIVVERLRPYGVLQETF 1078
Query: 1075 -----VSMGPTSKSSSKVPKSA--SNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
S G TSK SK+ KS + S+HGNRA +SR IPT+ +R E++MSVQD +VQ
Sbjct: 1079 DLGRTSSTGTTSKVGSKIGKSTGPAERASRHGNRAGASRAIPTRNSRQETLMSVQDISVQ 1138
Query: 1128 SQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQ 1187
SQAL+NVKDS+K +RER+VVRRFKFE+PR+EQIQ+LE+D+MKYFREDLHRRLLSTDFKKQ
Sbjct: 1139 SQALINVKDSHKGERERIVVRRFKFEEPRLEQIQDLESDLMKYFREDLHRRLLSTDFKKQ 1198
Query: 1188 VDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGY 1247
VDG+EMLQKALPSI K++IEVLDI+LRWFVL+FC+SNT+CLLKVLEFLPELF+ LR+EGY
Sbjct: 1199 VDGIEMLQKALPSIAKELIEVLDIVLRWFVLRFCESNTSCLLKVLEFLPELFEMLRNEGY 1258
Query: 1248 SLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRT 1307
+TE+EAA+FLPCLVEKSGHNIEKVREKMRELTKQI++ YSA KT PYILEGLRS++NRT
Sbjct: 1259 MMTEAEAAIFLPCLVEKSGHNIEKVREKMRELTKQIIHAYSAAKTFPYILEGLRSRSNRT 1318
Query: 1308 RIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIW 1367
RIEC DLVG+L+D+H AEI GQLKSL+ VA+LTAERDGE RKAALNTLATGYKILG+DIW
Sbjct: 1319 RIECADLVGYLLDNHEAEIGGQLKSLKDVANLTAERDGETRKAALNTLATGYKILGDDIW 1378
Query: 1368 RYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQ 1427
+Y+GKLT+AQ+SMLDDRFKWK REM+K++EG+PGEARAALRRSVR+NG+DIAE SG+VS+
Sbjct: 1379 KYLGKLTEAQRSMLDDRFKWKAREMDKRREGRPGEARAALRRSVRDNGTDIAEPSGEVSR 1438
Query: 1428 SVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVC 1487
S++GP L R Y ++E +ER + R ++ GP+DWNEALDII+ SPEQSVEGMKVVC
Sbjct: 1439 SLAGPILNRDIYNNTEFPMERIVNLRPVSGTMGPSDWNEALDIIASDSPEQSVEGMKVVC 1498
Query: 1488 HELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTF 1547
H LA ATNDPEGS MD++VKDAD+LVSCLANKVA+TFDFSL GASSRSCKYVLNTLMQTF
Sbjct: 1499 HLLAVATNDPEGSAMDDIVKDADKLVSCLANKVARTFDFSLMGASSRSCKYVLNTLMQTF 1558
Query: 1548 QNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF 1607
QN+ LA+AV+ESTLD LITELLLWLLDERVP MDDGSQLLKALNVLMLKILDNADRTSSF
Sbjct: 1559 QNRTLAHAVRESTLDILITELLLWLLDERVPRMDDGSQLLKALNVLMLKILDNADRTSSF 1618
Query: 1608 VVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQ 1667
VVLI LLRPLDPSRWPSPA++ES RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRILQ
Sbjct: 1619 VVLIKLLRPLDPSRWPSPATDESLVIRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILQ 1678
Query: 1668 SIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPII 1727
SIH+YLQELGM+EIRRRAGADDKPLRMVKTVLHELVKLRG AIKGHLSMVPIDM+P PII
Sbjct: 1679 SIHIYLQELGMDEIRRRAGADDKPLRMVKTVLHELVKLRGTAIKGHLSMVPIDMQPPPII 1738
Query: 1728 LAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGD 1787
LAYIDLNL+TLAAARMLT + P GQTHWGDSAANNP AT++ADAQLKQELAAIFKKIGD
Sbjct: 1739 LAYIDLNLQTLAAARMLTPSVP-GQTHWGDSAANNPAPATHNADAQLKQELAAIFKKIGD 1797
Query: 1788 KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPM 1847
KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPM
Sbjct: 1798 KQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPM 1857
Query: 1848 ATPPPAALGSVVPLLQKFFP 1867
+TPPP++L P K P
Sbjct: 1858 STPPPSSLNLSSPKFGKLSP 1877
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434204|ref|XP_004134886.1| PREDICTED: protein MOR1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3014 bits (7814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1495/1872 (79%), Positives = 1655/1872 (88%), Gaps = 37/1872 (1%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRL HKNWKVRNEANIDLAA+CDSITDPKD+R+RE GPLF+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLSHKNWKVRNEANIDLAAVCDSITDPKDSRLREFGPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIAYL+AADADAGR+AKE CDAI AKCLTGRPKTVEKAQAVFMLW
Sbjct: 61 VADSNAPVQEKALDALIAYLRAADADAGRFAKETCDAIVAKCLTGRPKTVEKAQAVFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEA DVFLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAK++PPKRILKMLPELFDHQ
Sbjct: 121 VELEAADVFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKVVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+ILFEKMRDTMKKELE ELVNV+G+ARP+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMKKELEAELVNVTGSARPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE +E SE VG GPSEES ADVP EIDEY+LVDPVDILTPLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEKEDTSEAVGTGPSEESVADVPQEIDEYDLVDPVDILTPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAEL+KLAST++IAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNL+RGLR +F
Sbjct: 301 ERKEAVAELSKLASTRKIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLSRGLRANF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVR 420
S SSRFLLPVLLEKLKEKKP + ESLTQTLQAMHKAGCL+L DV+EDVKT+ KNKVPLVR
Sbjct: 361 SASSRFLLPVLLEKLKEKKPALMESLTQTLQAMHKAGCLSLSDVIEDVKTASKNKVPLVR 420
Query: 421 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480
S TL+WVTFCIETS+KA +LKVHK+YVPI ME LNDGTPEVRDAAF LAA+AK
Sbjct: 421 SSTLSWVTFCIETSNKAVILKVHKEYVPIFMESLNDGTPEVRDAAFLALAAVAK------ 474
Query: 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540
IE L + ++ + + V S+ FV+KSAAS
Sbjct: 475 ----IESLSLSLSSGFGMLVPIYFAFIVN-----------NQLDLVLDSDGLFVKKSAAS 519
Query: 541 MLSGKRPVSAAPASKKGGPVKPSAKKDGSGK------QETSKLTEAPEDVEPSEMSLEEI 594
MLSGKRP AAP+SKKG K K G ++SK E PEDVEP+EMSLEE+
Sbjct: 520 MLSGKRPAQAAPSSKKGNLAKSGTNKKADGSVPSGAPPKSSKPIEVPEDVEPAEMSLEEV 579
Query: 595 ESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSE 654
ES+LGSLI ADTV QLKS VWKERLEAISSL+QQVE +++L+ SVEILVRL+C++PGWSE
Sbjct: 580 ESKLGSLIEADTVSQLKSTVWKERLEAISSLKQQVEGLEDLNPSVEILVRLLCIIPGWSE 639
Query: 655 KNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVG 714
KNVQVQQQVIEVI Y+A+TA KFPKKC+VLCL GISERVADIKTR AMKCLTTFSEAVG
Sbjct: 640 KNVQVQQQVIEVITYIASTAKKFPKKCIVLCLSGISERVADIKTRVQAMKCLTTFSEAVG 699
Query: 715 PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAA 774
PGFIFERL+KIMK+HKNPKVLSEG+LWMVSAVEDFG+S LKLKDLIDFCK+TGLQSSAAA
Sbjct: 700 PGFIFERLFKIMKEHKNPKVLSEGLLWMVSAVEDFGISLLKLKDLIDFCKETGLQSSAAA 759
Query: 775 TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGT-VVPKKTVRASES 833
TRN TIKLLG +HKFVGPD+KGFL+DVKPALL+A+D E+EKNPFEGT PK+TVRA E
Sbjct: 760 TRNVTIKLLGCVHKFVGPDLKGFLSDVKPALLTAIDTEFEKNPFEGTAAAPKRTVRAEEL 819
Query: 834 TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT 893
TSS S G+DGLPREDISGK TPTL+K+ ESPDWKVRLESIEAVNK+LEEANKRIQP GT
Sbjct: 820 TSSTSVSGTDGLPREDISGKITPTLLKNFESPDWKVRLESIEAVNKMLEEANKRIQPTGT 879
Query: 894 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMR 953
+L G LRGRLYDSNKNLVMATL T+G VASAMGP+VEKS KGVLSD+LKCLGDNKKHMR
Sbjct: 880 SDLLGALRGRLYDSNKNLVMATLATIGNVASAMGPSVEKSGKGVLSDVLKCLGDNKKHMR 939
Query: 954 ECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL 1013
E TLT LDAWLAAVH DKM+PY+ AL D K+ AEGRKDL +WLS++L+G++ DA L
Sbjct: 940 EATLTALDAWLAAVHFDKMIPYMILALVDNKVSAEGRKDLLEWLSRKLSGINDSSDAIQL 999
Query: 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIK----- 1068
LKPA A+TDKSSDVRKAAE+CI EILR G QE +EK +KDI GP L+L+LER++
Sbjct: 1000 LKPACSALTDKSSDVRKAAESCITEILRVGRQEAVEKVVKDISGPGLSLVLERLRPYGAL 1059
Query: 1069 ---LNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFA 1125
+ A QV+ SK++ KV K+ SNGV+KHGN+AISSR +KG R ES++S D A
Sbjct: 1060 QESFDSAKQVTSSLPSKNAIKVGKATSNGVAKHGNKAISSRGTISKGNRTESLISAHDLA 1119
Query: 1126 VQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFK 1185
VQSQALLNVKDSNKE+RER++VR+FKFE+PRIEQIQ+LENDMMKYFREDL RR+LSTDFK
Sbjct: 1120 VQSQALLNVKDSNKEERERIIVRKFKFEEPRIEQIQDLENDMMKYFREDLQRRMLSTDFK 1179
Query: 1186 KQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDE 1245
KQVDG+EMLQKAL SI KD+IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELF+ L+DE
Sbjct: 1180 KQVDGIEMLQKALASIGKDVIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFEILKDE 1239
Query: 1246 GYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNN 1305
GY + ESEAA+FLPCL+EK GHNIEKV+EKMRELTKQI+ YSATK PYILEGLRSKNN
Sbjct: 1240 GYCINESEAAIFLPCLIEKLGHNIEKVKEKMRELTKQIIQAYSATKMFPYILEGLRSKNN 1299
Query: 1306 RTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGED 1365
RTRIEC DL+GFLID++G+EISGQL+SLQ+VASLTAERDGEIRKAALNTLATGYKILGE+
Sbjct: 1300 RTRIECADLIGFLIDNYGSEISGQLRSLQLVASLTAERDGEIRKAALNTLATGYKILGEE 1359
Query: 1366 IWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDV 1425
+WRYVGKLTDAQ+SMLDDRFKWKVREMEKKKEGKPGEARAA+RR +RE S++AEQSG+V
Sbjct: 1360 VWRYVGKLTDAQRSMLDDRFKWKVREMEKKKEGKPGEARAAMRRPLREYESEVAEQSGEV 1419
Query: 1426 SQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKV 1485
S+S+SG R+NYG SELH+ER +P+ L + +GPTDWNEA+DIISFGSPEQSVEGMKV
Sbjct: 1420 SRSMSGTISTRKNYG-SELHMERQSVPQPLTTANGPTDWNEAMDIISFGSPEQSVEGMKV 1478
Query: 1486 VCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQ 1545
VCHELAQA++DPEGS MDEL +DADRLV CLA KVAKTFD+SLTGASSRSCKYVLNTLMQ
Sbjct: 1479 VCHELAQASSDPEGSSMDELARDADRLVLCLATKVAKTFDYSLTGASSRSCKYVLNTLMQ 1538
Query: 1546 TFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTS 1605
TFQNKRLAYAV+E TLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTS
Sbjct: 1539 TFQNKRLAYAVKEKTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTS 1598
Query: 1606 SFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRI 1665
SFVVLINLLRPL+PSRWPS S ESFA+RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRI
Sbjct: 1599 SFVVLINLLRPLEPSRWPSTGSKESFASRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRI 1658
Query: 1666 LQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQP 1725
LQSIH+YLQ LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQP
Sbjct: 1659 LQSIHLYLQNLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQP 1718
Query: 1726 IILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKI 1785
IILAYIDLNLETLAAARMLTSTGP GQTHWGDS ANN +S T SADAQLKQELAAIFKKI
Sbjct: 1719 IILAYIDLNLETLAAARMLTSTGPAGQTHWGDSTANNASSGTQSADAQLKQELAAIFKKI 1778
Query: 1786 GDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSV 1845
GDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQME+NAAAGRTPSS+
Sbjct: 1779 GDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMERNAAAGRTPSSL 1838
Query: 1846 PMATPPPAALGS 1857
P++TPPPA++ S
Sbjct: 1839 PLSTPPPASMNS 1850
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297823359|ref|XP_002879562.1| hypothetical protein ARALYDRAFT_482523 [Arabidopsis lyrata subsp. lyrata] gi|297325401|gb|EFH55821.1| hypothetical protein ARALYDRAFT_482523 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2997 bits (7771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1484/1866 (79%), Positives = 1651/1866 (88%), Gaps = 15/1866 (0%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPWEDRL HKNWKVRNEAN+DLA+L DSITDPKD R+R+ G LF+KTV
Sbjct: 3 AEDEKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASLFDSITDPKDPRLRDFGHLFRKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDALIA+L+AAD+DAGRYAKEVCDAIAAKCLTGR TV+KAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALIAFLRAADSDAGRYAKEVCDAIAAKCLTGRKNTVDKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEAVDVFLD MEKAIKNKVAKAVVPA+DVMFQALSEFG+K+IPPKRILKMLPELFDHQD
Sbjct: 123 ELEAVDVFLDTMEKAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRAS+KG+TLELCRWIGKDPVK+ILFEKMRDTMKKELE EL NVSG A+PTRKIR+EQ
Sbjct: 183 QNVRASAKGVTLELCRWIGKDPVKSILFEKMRDTMKKELEAELTNVSGGAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
DKE E S+ VG GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 DKEPEAEASSDVVGDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
RK+AVAELTKLASTK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS
Sbjct: 303 RKEAVAELTKLASTKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
SSRF+LPVLLEKLKEKKP+V E LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS
Sbjct: 363 ASSRFMLPVLLEKLKEKKPSVTEPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
TL W+TFC+ETS+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPL
Sbjct: 423 STLTWLTFCLETSNKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLSEMIAGSGG GTSS VQ+S GS + SE+SFVRKSAASM
Sbjct: 483 ERSLEKLDDVRKKKLSEMIAGSGGGDQAGTSSVTVQSSVGST-ATGNSEASFVRKSAASM 541
Query: 542 LSGKRPVSAAPAS-KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600
LSGKRP +APAS K G KKDGS + E K E PEDVEP+EM LEEIE+RLGS
Sbjct: 542 LSGKRPAPSAPASKKVGTGKPGGGKKDGSVRNEGPKSVEPPEDVEPAEMGLEEIENRLGS 601
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ 660
L+ +T+ QLKS+VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKNVQVQ
Sbjct: 602 LVKPETISQLKSSVWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQ 661
Query: 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
QQVIE+I Y+++TA KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FE
Sbjct: 662 QQVIEIITYISSTAAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFE 721
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
RL+KIMK+HKNPKVLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATI
Sbjct: 722 RLFKIMKEHKNPKVLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATI 781
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840
KLLGALHKFVGPDIKGFL DVKPALLSALD EYEKNPFEGT PK+ V + ++S SSG
Sbjct: 782 KLLGALHKFVGPDIKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVV-KTSVSTSTSSG 840
Query: 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900
G D LPREDIS K TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGL
Sbjct: 841 GLDSLPREDISSKITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGL 900
Query: 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960
RGRL DSNKNLVM TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL L
Sbjct: 901 RGRLLDSNKNLVMQTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAAL 960
Query: 961 DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1020
D WL AVHLDKM+PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS A
Sbjct: 961 DLWLGAVHLDKMIPYIILALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTA 1020
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQ 1074
MTDKS+DVRKAAE CI EILR GQETIEKNLKDI GPALAL+LE+++ +S+
Sbjct: 1021 MTDKSADVRKAAEGCISEILRVSGQETIEKNLKDIHGPALALVLEKVRPGFVQEPFESSK 1080
Query: 1075 VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134
GP SK SK+ KS SNG K GNR SR +PTKG++ I SV D A+QSQALLN
Sbjct: 1081 AMAGPVSKGVSKISKSTSNGTLKQGNR---SRAVPTKGSQ---ITSVHDIAIQSQALLNT 1134
Query: 1135 KDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEML 1194
KDSNKEDRER+VVRR KFE+ R EQI +LENDMMK+FREDL +RLLS DFKKQVDGLE+L
Sbjct: 1135 KDSNKEDRERVVVRRIKFEELRPEQILDLENDMMKFFREDLQKRLLSPDFKKQVDGLEIL 1194
Query: 1195 QKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 1254
QKALPS+ K+IIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EA
Sbjct: 1195 QKALPSVSKEIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEA 1254
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDL 1314
A+FLPCL EK GHNIEKVREKMREL KQ++ YS KT PYILEGLRSKNNRTRIEC DL
Sbjct: 1255 AIFLPCLAEKLGHNIEKVREKMRELMKQLIQAYSVAKTYPYILEGLRSKNNRTRIECTDL 1314
Query: 1315 VGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
+G+L++ G EI G LK L +VASLTAERDGE+RKAALNT+ATGYKILG+DIW+YVGKLT
Sbjct: 1315 IGYLLETCGTEIGGLLKYLNMVASLTAERDGELRKAALNTMATGYKILGDDIWKYVGKLT 1374
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
DAQKSM+DDRFKWKV+EMEK++EGKPGEARAALRRSVR+NG ++AEQSGD+SQ V GP
Sbjct: 1375 DAQKSMIDDRFKWKVKEMEKRREGKPGEARAALRRSVRDNGPEVAEQSGDLSQIVPGPLF 1434
Query: 1435 MRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQAT 1494
R+NYG SE +ER+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+
Sbjct: 1435 PRQNYGISEQILERNPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQAS 1494
Query: 1495 NDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAY 1554
NDPE S +DELVKDAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+
Sbjct: 1495 NDPEESAIDELVKDADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAH 1554
Query: 1555 AVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLL 1614
AV+E TL+SLITELLLWLLDERVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LL
Sbjct: 1555 AVKEGTLESLITELLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLL 1614
Query: 1615 RPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQ 1674
RPLDPSRWPSPA+ E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ
Sbjct: 1615 RPLDPSRWPSPATAEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQ 1674
Query: 1675 ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLN 1734
ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLN
Sbjct: 1675 ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLN 1734
Query: 1735 LETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIG 1794
LETLAAARMLT+TGP GQTHW DS ANNP+ NSAD QLKQEL AIFKKIGDKQT IG
Sbjct: 1735 LETLAAARMLTATGPVGQTHWTDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSKIG 1794
Query: 1795 LYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAA 1854
LY+LY IT+ YPKVDIF+QLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++
Sbjct: 1795 LYDLYHITKSYPKVDIFSQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSS 1854
Query: 1855 LGSVVP 1860
L P
Sbjct: 1855 LALPSP 1860
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30686489|ref|NP_565811.2| microtubule organization 1 protein [Arabidopsis thaliana] gi|75250086|sp|Q94FN2.1|MOR1_ARATH RecName: Full=Protein MOR1; AltName: Full=Protein GEM1; AltName: Full=Protein GEMINI POLLEN 1; AltName: Full=Protein MICROTUBULE ORGANIZATION 1; AltName: Full=Protein RID5; AltName: Full=Protein ROOT INITIATION DEFECTIVE 5 gi|14317953|gb|AAK59871.1|AF367246_1 microtubule organization 1 protein [Arabidopsis thaliana] gi|22252950|gb|AAM94170.1| MOR1/GEM1 [Arabidopsis thaliana] gi|330254039|gb|AEC09133.1| microtubule organization 1 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2983 bits (7734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1474/1866 (78%), Positives = 1648/1866 (88%), Gaps = 14/1866 (0%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPWEDRL HKNWKVRNEAN+DLA++ DSITDPKD R+R+ G LF+KTV
Sbjct: 3 TEDEKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGHLFRKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDALIA+L+AAD+DAGRYAKEVCDAIA KCLTGR TV+KAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALIAFLRAADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEAVDVFLD MEKAIKNKVAKAVVPA+DVMFQALSEFG+K+IPPKRILKMLPELFDHQD
Sbjct: 123 ELEAVDVFLDTMEKAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRAS+KG+TLELCRWIGKDPVK+ILFEKMRDTMKKELE EL NV+ A+PTRKIR+EQ
Sbjct: 183 QNVRASAKGVTLELCRWIGKDPVKSILFEKMRDTMKKELEAELANVTAGAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
DKE E S+ VG GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 DKEPEAEASSDVVGDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
RK+AVAELTKLASTK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS
Sbjct: 303 RKEAVAELTKLASTKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
SSRF+LPVLLEKLKEKK +V + LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS
Sbjct: 363 ASSRFMLPVLLEKLKEKKQSVTDPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
TL W+TFC+ETS+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPL
Sbjct: 423 STLTWLTFCLETSNKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLSEMIAGSGG GTSS VQ+S GS + S++SFVRKSAASM
Sbjct: 483 ERSLEKLDDVRKKKLSEMIAGSGGGDQAGTSSVTVQSSVGST-ATGNSDASFVRKSAASM 541
Query: 542 LSGKRPVSAAPAS-KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600
LSGKRP +A AS K G KKDGS + E SK E PEDVEP+EM LEEIE+RLGS
Sbjct: 542 LSGKRPAPSAQASKKVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIENRLGS 601
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ 660
L+ +TV QLKS+VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKNVQVQ
Sbjct: 602 LVKPETVSQLKSSVWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQ 661
Query: 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
QQVIE+I Y+++TA KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FE
Sbjct: 662 QQVIEIITYISSTAAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFE 721
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
RL+KIMK+HKNPKVLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATI
Sbjct: 722 RLFKIMKEHKNPKVLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATI 781
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840
KLLGALHKFVGPDIKGFL DVKPALLSALD EYEKNPFEGT PK+ V + ++S SSG
Sbjct: 782 KLLGALHKFVGPDIKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVV-KTSVSTSTSSG 840
Query: 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900
G D LPREDIS K TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGL
Sbjct: 841 GLDSLPREDISTKITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGL 900
Query: 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960
RGRL DSNKNLVM TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL L
Sbjct: 901 RGRLLDSNKNLVMQTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAAL 960
Query: 961 DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1020
D WL AVHLDKM+PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS A
Sbjct: 961 DLWLGAVHLDKMIPYIIIALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTA 1020
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQ 1074
MTDKS+DVRKAAE CI EILR GQE IEKNLKDIQGPALAL+LE+++ +S+
Sbjct: 1021 MTDKSADVRKAAEGCISEILRVSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSK 1080
Query: 1075 VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134
GP SK +K+ KS SNG K GNR SR +PTKG+ I SV D A+QSQALLN
Sbjct: 1081 AMAGPVSKGVTKISKSTSNGTLKQGNR---SRAVPTKGS--SQITSVHDIAIQSQALLNT 1135
Query: 1135 KDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEML 1194
KDSNKEDRER+VVRR KFE+ R EQIQ+LENDMMK+FREDL +RLLS DFKKQVDGLE+L
Sbjct: 1136 KDSNKEDRERVVVRRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEIL 1195
Query: 1195 QKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 1254
QKALPS+ K+IIEVLD+LLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EA
Sbjct: 1196 QKALPSVSKEIIEVLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEA 1255
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDL 1314
A+FLPCL EK GHNIEKVREKMREL KQI+ YS KT PYILEGLRSKNNRTRIEC DL
Sbjct: 1256 AIFLPCLAEKLGHNIEKVREKMRELMKQIIQAYSVGKTYPYILEGLRSKNNRTRIECTDL 1315
Query: 1315 VGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
+G+L++ G EI G LK L IVASLTAERDGE+RKAALNT+ATGY+ILG DIW+YVGKLT
Sbjct: 1316 IGYLLETCGTEIGGLLKYLNIVASLTAERDGELRKAALNTMATGYQILGADIWKYVGKLT 1375
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
DAQKSM+DDRFKWK ++MEK++EGKPGEARAALRRSVR++G ++AEQSGD+SQ+V GP
Sbjct: 1376 DAQKSMIDDRFKWKAKDMEKRREGKPGEARAALRRSVRDSGPEVAEQSGDISQTVPGPLF 1435
Query: 1435 MRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQAT 1494
R++YG SE +ER+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+
Sbjct: 1436 PRQSYGISEQMLERTPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQAS 1495
Query: 1495 NDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAY 1554
NDPE S +DELVKDAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+
Sbjct: 1496 NDPEESAIDELVKDADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAH 1555
Query: 1555 AVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLL 1614
AV+E TL+SLITELLLWLLDERVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LL
Sbjct: 1556 AVKEGTLESLITELLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLL 1615
Query: 1615 RPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQ 1674
RPLDPSRWPSPA+ E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ
Sbjct: 1616 RPLDPSRWPSPATAEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQ 1675
Query: 1675 ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLN 1734
+LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLN
Sbjct: 1676 DLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLN 1735
Query: 1735 LETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIG 1794
LETLAAARMLT+TGP GQTHW DS ANNP+ NSAD QLKQEL AIFKKIGDKQT TIG
Sbjct: 1736 LETLAAARMLTATGPVGQTHWTDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSTIG 1795
Query: 1795 LYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAA 1854
LY+LY IT+ YPKVDIF+QLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++
Sbjct: 1796 LYDLYHITKSYPKVDIFSQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSS 1855
Query: 1855 LGSVVP 1860
L P
Sbjct: 1856 LALPSP 1861
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115440677|ref|NP_001044618.1| Os01g0816400 [Oryza sativa Japonica Group] gi|75251094|sp|Q5N749.1|MOR1_ORYSJ RecName: Full=Protein MOR1; AltName: Full=Protein GEM1; AltName: Full=Protein MICROTUBULE ORGANIZATION 1 gi|56785068|dbj|BAD82707.1| putative microtubule bundling polypeptide TMBP200 [Oryza sativa Japonica Group] gi|56785322|dbj|BAD82281.1| putative microtubule bundling polypeptide TMBP200 [Oryza sativa Japonica Group] gi|113534149|dbj|BAF06532.1| Os01g0816400 [Oryza sativa Japonica Group] gi|222619446|gb|EEE55578.1| hypothetical protein OsJ_03864 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 2803 bits (7266), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1404/1887 (74%), Positives = 1628/1887 (86%), Gaps = 34/1887 (1%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPW++RL HKNWKVRN+ANIDLAALCDSITDPKD R+RE GPLFKKTV
Sbjct: 3 TEDEKLLKEAKKLPWDERLQHKNWKVRNDANIDLAALCDSITDPKDARLREFGPLFKKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDAL+A+ +AADADA RYAKEVCDAI AKCLTGRPKTVEKAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALLAFQRAADADASRYAKEVCDAIVAKCLTGRPKTVEKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEA +VFL+ MEKA+KNKVAKAVVPAIDVMFQALSEFGAK++PPK+ILKMLPELFDH D
Sbjct: 123 ELEAAEVFLESMEKAVKNKVAKAVVPAIDVMFQALSEFGAKVVPPKKILKMLPELFDHPD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRASSKGLTLELCRWIGK+PVK ILFEKMRDTMKKELE EL NVSG A+PTRKIR+EQ
Sbjct: 183 QNVRASSKGLTLELCRWIGKEPVKAILFEKMRDTMKKELEAELANVSGIAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
+KEL +E++ E G SEE+ + P EIDEY+LVDPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 EKELEEEVVPEAAGTNNSEEAVPEAPMEIDEYDLVDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
R+DAVAELTKLASTK+IAPGDF E+CRTLKKLITDVN+AV+VEA QAIGNLA+GLRTHFS
Sbjct: 303 RRDAVAELTKLASTKKIAPGDFHEICRTLKKLITDVNLAVSVEATQAIGNLAKGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
G+SR LLPVLLEKLKEKKPT+ E+L+QTLQAMHK+GC+ L+DV+EDV+ +VKNKVPLVRS
Sbjct: 363 GNSRVLLPVLLEKLKEKKPTMTEALSQTLQAMHKSGCITLLDVIEDVRVAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
LTLNWV FCIETS+KA VLK+HK+YVPICMECLNDGTPEVRDA+FSVL AIAK VGM+PL
Sbjct: 423 LTLNWVAFCIETSNKATVLKLHKEYVPICMECLNDGTPEVRDASFSVLTAIAKMVGMKPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLS+MI GS D +GT +A +G + E +SS +R+SAASM
Sbjct: 483 ERSLEKLDDVRKKKLSDMI-GSASDTTSGTVAA--SNTGVGTSAREVMDSSSMRRSAASM 539
Query: 542 LSGKRPVSAAPASKKGGPVK-PSAKKDGSGKQETSKLTEAP--EDVEPSEMSLEEIESRL 598
LSGK+PV A PA+KK GP K +AKK G Q SK + AP EDVEPSEMSLEEIE +L
Sbjct: 540 LSGKKPVQAVPATKKSGPAKSATAKKTDGGPQ--SKASAAPVIEDVEPSEMSLEEIEEKL 597
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658
S++ ++T+ QLKS VWKERLEAIS L+Q+VE++ LD+S E+LVRL+C +PGWSEKNVQ
Sbjct: 598 SSVVKSETISQLKSTVWKERLEAISMLKQEVESLTELDKSAELLVRLLCAVPGWSEKNVQ 657
Query: 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
VQQQVIEV Y+A+T +FPK+CVVLCLLGISERVADIKTR HAMKCLT F EAVGPGF+
Sbjct: 658 VQQQVIEVSTYIASTVNRFPKRCVVLCLLGISERVADIKTRGHAMKCLTAFCEAVGPGFV 717
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
FERLYKIMK+HKNPKVLSEGILWMVSAVEDFG+S+LKLKD IDFCKD GLQSSAAATRNA
Sbjct: 718 FERLYKIMKEHKNPKVLSEGILWMVSAVEDFGISNLKLKDTIDFCKDIGLQSSAAATRNA 777
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV-VPKKTVRASESTSSV 837
TIKL+G LHKFVGPDIKGFL+DVKPALLS LDAEYEKNPFEGT PK+TVRA+++ SS
Sbjct: 778 TIKLIGVLHKFVGPDIKGFLSDVKPALLSTLDAEYEKNPFEGTASAPKRTVRAADAVSSA 837
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
SSG SDGLPREDIS K TPTL+K+L SPDWK+RLESI+AV+KI+EEA+KRIQP GT ELF
Sbjct: 838 SSGTSDGLPREDISAKITPTLLKNLGSPDWKLRLESIDAVSKIVEEAHKRIQPTGTVELF 897
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
LR RLYDSNKNLVMATL T+G +ASAMGPAVEKSSKG+L+D+LKCLGDNKKHMRECTL
Sbjct: 898 TALRARLYDSNKNLVMATLSTIGGLASAMGPAVEKSSKGILADVLKCLGDNKKHMRECTL 957
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
T LD W+AA LDKMVPY+T L D K G+EGRKDLFDWLSK + +S +A LLKP+
Sbjct: 958 TALDLWVAAAQLDKMVPYITVTLGDQKTGSEGRKDLFDWLSKHASNMSDPSEALPLLKPS 1017
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
+ ++ DKSS+VRKAAE+ + EIL+ GQ+ + KNLKD+ P LA++ ER+KL+ +
Sbjct: 1018 ASSLMDKSSEVRKAAESFMNEILKICGQDVVAKNLKDLPSPTLAIVAERLKLSTVHEGFS 1077
Query: 1075 -------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
SM SK+ SK K N + ++A+S R IP + + +++S QD ++Q
Sbjct: 1078 DSVKMVTTSMSLPSKAGSKNNKHGPNDRGSNVSKAVSQRGIPARSSV--TMISSQD-SIQ 1134
Query: 1128 SQALLNVKDSNKEDRERMV-VRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKK 1186
SQAL N+KDSNKE+RER V VR+FKFE+PR EQI EL+ ++ ++FRED+ RL ++DFK+
Sbjct: 1135 SQALFNIKDSNKEERERRVLVRKFKFEEPRREQIDELKIELFRHFREDVSLRLWNSDFKR 1194
Query: 1187 QVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEG 1246
Q+DG+E+LQKALPS RK++IE+LDILLRWFVL+FC+SNTTCLLKVL+FLPELFD L+D+
Sbjct: 1195 QIDGIELLQKALPSSRKEVIELLDILLRWFVLRFCESNTTCLLKVLDFLPELFDVLKDQS 1254
Query: 1247 YSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNR 1306
Y LTE+EAA+FLPCL+EKSGHNIEKVREKM EL KQ+VN YS K LPYILEGLRSKNNR
Sbjct: 1255 YMLTEAEAAIFLPCLMEKSGHNIEKVREKMGELIKQMVNIYSLPKLLPYILEGLRSKNNR 1314
Query: 1307 TRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDI 1366
TRIECVD++G+ +DHHG E+SG LK+L VA+LTAERDGEIRKAALNTLAT YK LG+D+
Sbjct: 1315 TRIECVDIIGYFMDHHGTEVSGLLKNLPSVAALTAERDGEIRKAALNTLATAYKNLGDDV 1374
Query: 1367 WRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGD-V 1425
WRYVGKL+DAQ+SMLDDRFKWK REM+K++EG+PG+ARAALRRSVRENGSDIAEQSG+ V
Sbjct: 1375 WRYVGKLSDAQRSMLDDRFKWKAREMDKRREGRPGDARAALRRSVRENGSDIAEQSGEAV 1434
Query: 1426 SQSVSGPTLMRRNYGHSELHVERSIMPRALASVS-GPTDWNEALDIISFGSPEQSVEGMK 1484
S+S++G + R N+G+S+ H ++PR +A+ + GP DW EALDI++ G PEQSVEGMK
Sbjct: 1435 SRSMAGSMISRENFGYSDAH----MVPRQMATATPGPADWREALDIVALGLPEQSVEGMK 1490
Query: 1485 VVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLM 1544
V+CHEL QA DPE SV+D+L+K+ADRLVSCLA V KTF+FSL+GASSRSCKYVLNTLM
Sbjct: 1491 VICHELTQAV-DPESSVLDDLIKEADRLVSCLAVMVPKTFNFSLSGASSRSCKYVLNTLM 1549
Query: 1545 QTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRT 1604
QTFQ KRLA+AV+E TLD+LITELLLWLLDERVP MDDGSQLLKALNVLMLKILDNA+RT
Sbjct: 1550 QTFQIKRLAHAVKEGTLDNLITELLLWLLDERVPLMDDGSQLLKALNVLMLKILDNAERT 1609
Query: 1605 SSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDR 1664
SSFVVLINLLRPLDPSRWPSP ES A +NQ+FSDLVVKCLIKLTKVLQSTIY+VDLDR
Sbjct: 1610 SSFVVLINLLRPLDPSRWPSPTPPESLAVKNQKFSDLVVKCLIKLTKVLQSTIYEVDLDR 1669
Query: 1665 ILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQ 1724
ILQSIH+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRG AIKGHLSMVPID +PQ
Sbjct: 1670 ILQSIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGTAIKGHLSMVPIDAEPQ 1729
Query: 1725 PIILAYIDLNLETLAAARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKK 1784
PIILAYIDLNL+TLAAARMLT +G GQTHWGD+ +NNP +T+S DAQLKQELAA+FKK
Sbjct: 1730 PIILAYIDLNLQTLAAARMLTPSGTMGQTHWGDAGSNNPNPSTHSTDAQLKQELAAVFKK 1789
Query: 1785 IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSS 1844
IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS
Sbjct: 1790 IGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSS 1849
Query: 1845 VPMATPPPAALGSVVPLLQKFFPPRIH 1871
+P++T KF P +H
Sbjct: 1850 LPLST----PPPIAPIPSPKFAPSPVH 1872
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1871 | ||||||
| TAIR|locus:2058739 | 1978 | MOR1 "MICROTUBULE ORGANIZATION | 0.982 | 0.929 | 0.746 | 0.0 | |
| UNIPROTKB|E1B7K5 | 2032 | CKAP5 "Uncharacterized protein | 0.555 | 0.511 | 0.294 | 6.9e-174 | |
| UNIPROTKB|E2RSW0 | 2033 | CKAP5 "Uncharacterized protein | 0.596 | 0.548 | 0.285 | 4.3e-173 | |
| UNIPROTKB|Q14008 | 2032 | CKAP5 "Cytoskeleton-associated | 0.595 | 0.548 | 0.285 | 6e-171 | |
| UNIPROTKB|F1P0Y0 | 2036 | CKAP5 "Uncharacterized protein | 0.555 | 0.510 | 0.294 | 3.6e-170 | |
| MGI|MGI:1923036 | 2032 | Ckap5 "cytoskeleton associated | 0.557 | 0.513 | 0.288 | 6.5e-169 | |
| ZFIN|ZDB-GENE-051120-174 | 2033 | ckap5 "cytoskeleton associated | 0.535 | 0.492 | 0.295 | 1.6e-160 | |
| UNIPROTKB|F1M949 | 1778 | Ckap5 "Protein Ckap5" [Rattus | 0.427 | 0.449 | 0.292 | 6e-143 | |
| DICTYBASE|DDB_G0268616 | 2013 | cepJ "centrosomal protein 224 | 0.288 | 0.267 | 0.271 | 4.1e-123 | |
| UNIPROTKB|F1SIB5 | 1517 | F1SIB5 "Uncharacterized protei | 0.272 | 0.335 | 0.313 | 2e-113 |
| TAIR|locus:2058739 MOR1 "MICROTUBULE ORGANIZATION 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 7035 (2481.5 bits), Expect = 0., P = 0.
Identities = 1384/1853 (74%), Positives = 1545/1853 (83%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
PWEDRL HKNWKVRNEAN+DLA++ DSITDPKD R+R+ G LF+KTVADSNAPVQ+KALD
Sbjct: 16 PWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGHLFRKTVADSNAPVQEKALD 75
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVME 134
ALIA+L+AAD+DAGRYAKEVCDAIA KCLTGR TV+KAQA F+LWVELEAVDVFLD ME
Sbjct: 76 ALIAFLRAADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFLLWVELEAVDVFLDTME 135
Query: 135 XXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLE 194
+DVMFQALSEFG+K+IPPKRILKMLPELFDHQDQNVRAS+KG+TLE
Sbjct: 136 KAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQDQNVRASAKGVTLE 195
Query: 195 LCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDV 254
LCRWIGKDPVK+ILFEKMRDTMKKELE EL NV+ A+PTRKIR+EQDKE E S+ V
Sbjct: 196 LCRWIGKDPVKSILFEKMRDTMKKELEAELANVTAGAKPTRKIRSEQDKEPEAEASSDVV 255
Query: 255 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS 314
G GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSERK+AVAELTKLAS
Sbjct: 256 GDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSERKEAVAELTKLAS 315
Query: 315 TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXXXXX 374
TK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS SSRF
Sbjct: 316 TKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFSASSRFMLPVLLEK 375
Query: 375 XXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434
+V + LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS TL W+TFC+ETS
Sbjct: 376 LKEKKQSVTDPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRSSTLTWLTFCLETS 435
Query: 435 SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRN 494
+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPLERS+EKLDDVR+
Sbjct: 436 NKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPLERSLEKLDDVRKK 495
Query: 495 KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPAS 554
KLSEMIAGSGG GTSS VQ+S GS + S++SFVRKSAASMLSGKRP +A AS
Sbjct: 496 KLSEMIAGSGGGDQAGTSSVTVQSSVGSTATGN-SDASFVRKSAASMLSGKRPAPSAQAS 554
Query: 555 KKGGPVKPSA-KKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSA 613
KK G KP KKDGS + E SK E PEDVEP+EM LEEIE+RLGSL+ +TV QLKS+
Sbjct: 555 KKVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIENRLGSLVKPETVSQLKSS 614
Query: 614 VWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAAT 673
VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKN Y+++T
Sbjct: 615 VWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQQQVIEIITYISST 674
Query: 674 ATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPK 733
A KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FERL+KIMK+HKNPK
Sbjct: 675 AAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFERLFKIMKEHKNPK 734
Query: 734 VLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD 793
VLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATIKLLGALHKFVGPD
Sbjct: 735 VLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATIKLLGALHKFVGPD 794
Query: 794 IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXXXXXXLPREDISGK 853
IKGFL DVKPALLSALD EYEKNPFEGT PK+ V+ LPREDIS K
Sbjct: 795 IKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVVKTSVSTSTSSGGLDS-LPREDISTK 853
Query: 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 913
TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGLRGRL DSNKNLVM
Sbjct: 854 ITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGLRGRLLDSNKNLVM 913
Query: 914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMV 973
TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL LD WL AVHLDKM+
Sbjct: 914 QTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAALDLWLGAVHLDKMI 973
Query: 974 PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAE 1033
PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS AMTDKS+DVRKAAE
Sbjct: 974 PYIIIALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTAMTDKSADVRKAAE 1033
Query: 1034 ACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQVSMGPTXXXXXXX 1087
CI EILR GQE IEKNLKDIQGPALAL+LE+++ +S+ GP
Sbjct: 1034 GCISEILRVSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSKAMAGPVSKGVTKI 1093
Query: 1088 XXXXXNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVV 1147
NG K GNR SR +PTKG+ I SV D A+QSQALLN KDSNKEDRER+VV
Sbjct: 1094 SKSTSNGTLKQGNR---SRAVPTKGS--SQITSVHDIAIQSQALLNTKDSNKEDRERVVV 1148
Query: 1148 RRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIE 1207
RR KFE+ R EQIQ+LENDMMK+FREDL +RLLS DFKKQVDGLE+LQKALPS+ K+IIE
Sbjct: 1149 RRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEILQKALPSVSKEIIE 1208
Query: 1208 VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 1267
VLD+LLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EAA+FLPCL EK GH
Sbjct: 1209 VLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEAAIFLPCLAEKLGH 1268
Query: 1268 NIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEIS 1327
NIEKVREKMREL KQI+ YS KT PYILEGLRSKNNRTRIEC DL+G+L++ G EI
Sbjct: 1269 NIEKVREKMRELMKQIIQAYSVGKTYPYILEGLRSKNNRTRIECTDLIGYLLETCGTEIG 1328
Query: 1328 GQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKW 1387
G LK L IVASLTAERDGE+RKAALNT+ATGY+ILG DIW+YVGKLTDAQKSM+DDRFKW
Sbjct: 1329 GLLKYLNIVASLTAERDGELRKAALNTMATGYQILGADIWKYVGKLTDAQKSMIDDRFKW 1388
Query: 1388 KVRXXXXXXXXXXXXARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNYGHSELHVE 1447
K + ARAALRRSVR++G ++AEQSGD+SQ+V GP R++YG SE +E
Sbjct: 1389 KAKDMEKRREGKPGEARAALRRSVRDSGPEVAEQSGDISQTVPGPLFPRQSYGISEQMLE 1448
Query: 1448 RSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDELVK 1507
R+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+NDPE S +DELVK
Sbjct: 1449 RTPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQASNDPEESAIDELVK 1508
Query: 1508 DADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQXXXXXXXXXX 1567
DAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+AV+
Sbjct: 1509 DADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAHAVKEGTLESLITE 1568
Query: 1568 XXXXXXXERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPSRWPSPAS 1627
ERVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LLRPLDPSRWPSPA+
Sbjct: 1569 LLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLLRPLDPSRWPSPAT 1628
Query: 1628 NESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGA 1687
E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ+LGMEEIRRRAGA
Sbjct: 1629 AEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQDLGMEEIRRRAGA 1688
Query: 1688 DDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAARMLTST 1747
DDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLNLETLAAARMLT+T
Sbjct: 1689 DDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLNLETLAAARMLTAT 1748
Query: 1748 GPGGQTHWGXXXXXXXXXXXXXXXXQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYPK 1807
GP GQTHW QLKQEL AIFKKIGDKQT TIGLY+LY IT+ YPK
Sbjct: 1749 GPVGQTHWTDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSTIGLYDLYHITKSYPK 1808
Query: 1808 VDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAALGSVVP 1860
VDIF+QLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++L P
Sbjct: 1809 VDIFSQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSSLALPSP 1861
|
|
| UNIPROTKB|E1B7K5 CKAP5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1136 (405.0 bits), Expect = 6.9e-174, Sum P(3) = 6.9e-174
Identities = 319/1085 (29%), Positives = 522/1085 (48%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKFVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + ++++E+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGMEICLMYIEIEKGEAVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K + +
Sbjct: 130 LKGLDNKNPKIVVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLIAV 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISE 252
E+ RWI +D ++ L + + KELE E V + +G RP R +R++Q+ E E
Sbjct: 190 EIYRWI-RDALRPPL-QNINPVQLKELEEEWVKLPTGAPRPARFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 VKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG---MRPLERSIEK 487
+ + + K + K + ++ +ND PEVRDAAF L K VG + P ++K
Sbjct: 425 RHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVNPFLADVDK 484
Query: 488 L--DDVRR-NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSG 544
L D ++ ++ E++ G +A + G + S A + K A++ G
Sbjct: 485 LKLDKIKECSEKVELVHGKKAGLAADKKDFK-PVPGRAAASGAAGDKD--TKDASAPKPG 541
Query: 545 KRPVSAAPASKKGGPVKPS--AKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGS 600
P+ APA+K GGP K A + G+G T K E E VEP E+S+E E + +
Sbjct: 542 --PLKKAPAAKPGGPPKKGKPAAQGGTGGTGTKSKKAVETKEMVEP-ELSIEVCEEKASA 598
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXX 660
++PA + L S+ WKERL + ++ VE + + + LVR++ PGW E N
Sbjct: 599 VLPATCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVM 658
Query: 661 XXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
+A F K + L G+ +++ D+K +A + +T +EA + E
Sbjct: 659 QMKLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIAEACVLPWTAE 717
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
++ + KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I
Sbjct: 718 QVMSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAI 776
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXX-- 838
LLG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 777 TLLGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEKMQGQNPPAPTRGISKHSTSGTDEGE 836
Query: 839 ---------XXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ 889
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQ
Sbjct: 837 DGDEPDDGGSDAVDLLPRTEISDKITSELVSKIGDKNWKIRKEGLDEVAAIINEA-KFIQ 895
Query: 890 PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK 949
P GEL L+GRL DSNK LV TL L +A AMGP +++ K + ++ LGD+K
Sbjct: 896 P-NIGELPTALKGRLNDSNKILVQQTLTILQQLAVAMGPNIKQHVKNLGIPVITVLGDSK 954
Query: 950 KHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD 1009
++R L ++AW + + + + K R++L WL+++L L P
Sbjct: 955 NNVRSAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPT 1014
Query: 1010 AAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILE 1065
L P + + D++ DVRK A+ + + G E + K LK + +LE
Sbjct: 1015 DLILCVPQLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLE 1074
Query: 1066 RIKLN 1070
+ K N
Sbjct: 1075 KAKAN 1079
|
|
| UNIPROTKB|E2RSW0 CKAP5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1131 (403.2 bits), Expect = 4.3e-173, Sum P(3) = 4.3e-173
Identities = 331/1160 (28%), Positives = 549/1160 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKLVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + ++++E+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYIEIEKGEAVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K + +
Sbjct: 130 LKGLDNKNPKIVVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLIAV 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISE 252
E+ RWI +D ++ L + + KELE E V + +G +P+R +R++Q+ E E
Sbjct: 190 EIYRWI-RDALRPPL-QNINSVQLKELEEEWVKLPTGAPKPSRFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 VKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490
+ + + K + K + ++ +ND PEVRDAAF L K VG + + + +D
Sbjct: 425 RHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVNPFLADVDK 484
Query: 491 VRRNKL---SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR- 546
++ +K+ SE + G A G ++ + ++ VP A+ + K + + K
Sbjct: 485 LKLDKIKECSEKVELVHGKKA-GLAADKKESK--PVPGRTATSGAAGDKDTKDISAPKPG 541
Query: 547 PVSAAPASKKGGPVK---PSAK-KDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLI 602
P+ AP +K GGP K P+A GS + K E E VEP E+S+E E + +++
Sbjct: 542 PLKKAPTTKAGGPPKKGKPAAPGSTGSAGTKNKKGPETKEIVEP-ELSIEVCEEKASAVL 600
Query: 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXX 662
PA + L S+ WKERL + ++ VE + + + LVR++ PGW E N
Sbjct: 601 PATCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVMQM 660
Query: 663 XXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERL 722
+A F K + L G+ +++ D+K +A + +T +EA + E++
Sbjct: 661 KLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIAEACMLPWTAEQV 719
Query: 723 YKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKL 782
+ KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I L
Sbjct: 720 MSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAITL 778
Query: 783 LGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXX---- 838
LG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 779 LGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEKMQGQSPPAPTRGISKHSISGTDEGEDG 838
Query: 839 -------XXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA 891
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQP
Sbjct: 839 DEPDEVGTDVVDLLPRTEISDKITSELVSKISDKNWKIRKEGLDEVAGIINEA-KFIQP- 896
Query: 892 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH 951
GEL L+GRL DSNK LV TL L +A AMGP +++ K + I+ LGD+K +
Sbjct: 897 NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPNIKQHVKNLGIPIITVLGDSKNN 956
Query: 952 MRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1011
+R L ++AW + + + + K R++L WL+++L L P
Sbjct: 957 VRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPTDL 1016
Query: 1012 HLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERI 1067
L P + + D++ DVRK A+ + + G E + K LK + +LE+
Sbjct: 1017 ILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKA 1076
Query: 1068 KLNGASQ--VSMGPTXXXXXXXXXXXXNGVSKHGNRAISSRVIPTKGARPESIMSVQDFA 1125
K N ++ S + S ++SS V P + + V A
Sbjct: 1077 KANMPAKPAASAKASSKPMGGSAPAKFQPSSAPVEDSVSSTVEPKPDPKKAKALGVSSKA 1136
Query: 1126 VQSQAL-LNVKDSNKEDRER 1144
+Q + K S KED ++
Sbjct: 1137 KSAQGKKVPSKTSLKEDEDK 1156
|
|
| UNIPROTKB|Q14008 CKAP5 "Cytoskeleton-associated protein 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1118 (398.6 bits), Expect = 6.0e-171, Sum P(3) = 6.0e-171
Identities = 332/1161 (28%), Positives = 546/1161 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKFVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + ++++E+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYIEIEKGEAVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K + +
Sbjct: 130 LKGLDNKNPKIIVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLIAV 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQDKELGQELISE 252
E+ RWI +D ++ L + + KELE E V + +A RPTR +R++Q+ E E
Sbjct: 190 EIYRWI-RDALRPPL-QNINSVQLKELEEEWVKLPTSAPRPTRFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALESVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 IKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490
+ + + K + K + ++ +ND PEVRDAAF L K VG + + + +D
Sbjct: 425 RHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVNPFLADVDK 484
Query: 491 VRRNKL---SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR- 546
++ +K+ SE + G A G ++ + + +P A+ + K + + K
Sbjct: 485 LKLDKIKECSEKVELIHGKKA-GLAADKKEFK--PLPGRTAASGAAGDKDTKDISAPKPG 541
Query: 547 PVSAAPASKKGGPVKPS--AKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGSLI 602
P+ APA+K GGP K A G+G T K E E VEP E+S+E E + +++
Sbjct: 542 PLKKAPAAKAGGPPKKGKPAAPGGAGNTGTKNKKGLETKEIVEP-ELSIEVCEEKASAVL 600
Query: 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXX 662
P + L S+ WKERL + ++ VE + + + LVR++ PGW E N
Sbjct: 601 PPTCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVMQM 660
Query: 663 XXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERL 722
+A F K + L G+ +++ D+K +A + +T +EA + E++
Sbjct: 661 KLHIVALIAQKGN-FSKTSAQVVLDGLVDKIGDVKCGNNAKEAMTAIAEACMLPWTAEQV 719
Query: 723 YKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKL 782
+ KNPK SE + W+ +A+++FG S L +K I K T L ++ A R A I L
Sbjct: 720 VSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTAAITL 778
Query: 783 LGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXX----- 837
LG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 779 LGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEKMQGQSPPAPTRGISKHSTSGTDEGEDG 838
Query: 838 ------XXXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA 891
LPR +IS K T LV + +WK+R E ++ V I+ +A K IQP
Sbjct: 839 DEPDDGSNDVVDLLPRTEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINDA-KFIQP- 896
Query: 892 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH 951
GEL L+GRL DSNK LV TL L +A AMGP +++ K + I+ LGD+K +
Sbjct: 897 NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPNIKQHVKNLGIPIITVLGDSKNN 956
Query: 952 MRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1011
+R L ++AW + + + + K R++L WL+++L L P
Sbjct: 957 VRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPTDL 1016
Query: 1012 HLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERI 1067
L P + + D++ DVRK A+ + + G E + K LK + +LE+
Sbjct: 1017 ILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKA 1076
Query: 1068 KLNGASQVSMGPTXXXXX---XXXXXXXNGVSKHGNRAISSRVIPTKGARPESIMSVQDF 1124
K+N ++ + PT S ISS P + +
Sbjct: 1077 KVNMPAKPAP-PTKATSKPMGGSAPAKFQPASAPAEDCISSSTEPKPDPKKAKAPGLSSK 1135
Query: 1125 AVQSQAL-LNVKDSNKEDRER 1144
A +Q + K S KED ++
Sbjct: 1136 AKSAQGKKMPSKTSLKEDEDK 1156
|
|
| UNIPROTKB|F1P0Y0 CKAP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1116 (397.9 bits), Expect = 3.6e-170, Sum P(3) = 3.6e-170
Identities = 319/1084 (29%), Positives = 514/1084 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + L I D K + L KK V DSNA Q K L+
Sbjct: 11 PIDQKCEHKLWKARLNGYEEALKLFQKIDDEKSPEWSKYLGLIKKFVTDSNAVAQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAV--FMLWVELEAVDVFLDV 132
A +AY++ A AG+ EV + K +PK K V ++++E+E + +
Sbjct: 71 AALAYVENAHV-AGKTTGEVASGVVNKVFN-QPKARAKELGVDICLMYIEIEKGEAVQEE 128
Query: 133 MEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLT 192
+ I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K L
Sbjct: 129 LLKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPIIKVLPKLFESREKAVRDEAKLLA 188
Query: 193 LELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQDKELGQELIS 251
+E+ RWI +D ++ L + + KELE E V VS A + TR +R++Q EL +
Sbjct: 189 VEIYRWI-RDALRPPL-QNINSVQLKELEEEWVKVSSAAPKQTRFLRSQQ--ELKAKFEQ 244
Query: 252 EDVGPGPSEESTAD---VPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAE 308
+ G +E D P++D YEL++ V+IL+ L K F+E ++A KW ERK+A+
Sbjct: 245 QQAAGGDGDEGDDDEEEAVPQVDAYELLEAVEILSKLPKD-FYEKIEAKKWQERKEALEA 303
Query: 309 LTKLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFX 367
+ L ++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 304 VEVLVKNPKLESGDYADLVKVLKKVVGKDTNVMLVALAAKCLAGLASGLRKKFGQYAGHV 363
Query: 368 XXXXXXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 364 VPTILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFI 421
Query: 428 TFCIETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG---MRPLER 483
+ + + K + K + ++ +ND PEVRDA F L K G + P
Sbjct: 422 ARSFRHCTPSTLPKSLLKPFCAALLKHINDSAPEVRDAGFEALGTALKVAGEKAVNPFLA 481
Query: 484 SIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLS 543
++KL R + +E + G + G P++ S K AA+
Sbjct: 482 DVDKLKLDRIKECAEKVELVYGKKTGAAEKKEGKPVAGKAPALSGSAGDKEIKDAAAK-P 540
Query: 544 GKRPVSAAPASKKGGPVKPSAKKDGSGKQET-SKLTEAPEDVE--PSEMSLEEIESRLGS 600
G P AP K GGP K S +G +K + PE E SE+S+E E + +
Sbjct: 541 G--PQKKAPVVKPGGPPKKSKPAAAAGTGGAGAKGKKGPETKEIFESELSIEVCEEKAAA 598
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXX 660
++PA + QL S WKERL ++ ++ VE ++ + + LVR++ PGW E N
Sbjct: 599 VLPASCIQQLDSGNWKERLASMEEFQKAVELMERSEMPCQALVRMLAKKPGWKETNFQVM 658
Query: 661 XXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
+A F K + L G+ ++V D+K ++A + +T +EA + E
Sbjct: 659 QMKLHIVALIAQKGN-FSKTSAQVVLDGLVDKVGDVKCGSNAKEAMTAIAEACQLPWTAE 717
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
++ + KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I
Sbjct: 718 QVVAMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAI 776
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXX 840
LLG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 777 TLLGVMYLYVGPPLRMFFEDEKPALLSQIDAEFEKMQGQTAPAPTRGISRHSGGSGDDGE 836
Query: 841 XXXX----------LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP 890
LPR DI K T LV + +WK+R E ++ V I+ +A K IQP
Sbjct: 837 EEEQEDVGNDVVDLLPRTDIGDKITAELVAKIGDKNWKIRKEGLDEVTSIINDA-KFIQP 895
Query: 891 AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK 950
GEL L+ RL DSNK LV TL L +A+AMGP +++ K + ++ LGD+K
Sbjct: 896 -NIGELPAALKSRLNDSNKILVQQTLSILQQLATAMGPNIKQHVKNLGIPVITVLGDSKN 954
Query: 951 HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA 1010
++R L ++AW + + + + K R++L WL+ +L L P
Sbjct: 955 NVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLADKLPTLRSVPSD 1014
Query: 1011 AHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILER 1066
L P + + D++ DVRK A+ + + G E + K LK + +LE+
Sbjct: 1015 LLLCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGFEKMAKATGKLKPTSKDQVLAMLEK 1074
Query: 1067 IKLN 1070
K N
Sbjct: 1075 AKAN 1078
|
|
| MGI|MGI:1923036 Ckap5 "cytoskeleton associated protein 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1095 (390.5 bits), Expect = 6.5e-169, Sum P(3) = 6.5e-169
Identities = 314/1089 (28%), Positives = 516/1089 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKYLGLIKKFVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + +++VE+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYVEIEKGESVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +D+ VR +K +
Sbjct: 130 LKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPIIKVLPKLFESRDKAVRDEAKLFAI 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISE 252
E+ RW +D VK L + + KELE E V + +G +P+R +R++Q+ E E
Sbjct: 190 EIYRW-NRDAVKHTL-QNINSVQLKELEEEWVKLPTGAPKPSRFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P++D YEL+D V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQVDAYELLDAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 VKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG---MRPLERSIEK 487
+ + + K + K + ++ +ND PEVRDAAF L K VG + P ++K
Sbjct: 425 RHCTSSTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKSVNPFLADVDK 484
Query: 488 L--DDVRR-NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSG 544
L D ++ ++ E++ G +AT ++ G + S A + K + G
Sbjct: 485 LKLDRIKECSEKVELVHGKKSGLATEKKESK-PLPGRAAASGAAGDKD--TKDVSGPKPG 541
Query: 545 KRPVSAAPASKKGGPVKP--SAKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGS 600
P+ P +K GGP K + GS T K E E VEP E+S+E E + +
Sbjct: 542 --PLKKTPTAKAGGPSKKGKTTAPGGSASAGTKNKKGLETKEIVEP-ELSIEVCEEKASA 598
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXX 660
++P + L S+ WKERL + ++ VE ++ + + LV+++ PGW E N
Sbjct: 599 VLPPTCIQLLDSSNWKERLACMEEFQKAVELMERTEMPCQALVKMLAKKPGWKETNFQVM 658
Query: 661 XXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
+A F K + L G+ +++ D+K +A + +T +EA + E
Sbjct: 659 QMKLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIAEACMLPWTAE 717
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
++ + KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I
Sbjct: 718 QVMSMAFSQKNPKNQSETLNWLSNAIKEFGFSELNVKAFISNVK-TALAATNPAVRTSAI 776
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXX 840
LLG ++ +VGP ++ D KPALLS +DAE++K + P + +
Sbjct: 777 TLLGVMYLYVGPSLRMIFEDEKPALLSQIDAEFQKMQGQSPPAPTRGIAKHSTSATDEGE 836
Query: 841 XXXX-----------LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ 889
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQ
Sbjct: 837 DGEEPGEGGNDVVDLLPRIEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINEA-KFIQ 895
Query: 890 PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK 949
P GEL L+GRL DSNK LV TL L +A AMG + + K + ++ LGD+K
Sbjct: 896 P-NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGANIRQHVKNLGIPVITVLGDSK 954
Query: 950 KHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD 1009
++R L ++AW + + + + K R++L WL+++L L P
Sbjct: 955 NNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPT 1014
Query: 1010 AAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILE 1065
L P + + D++ DVRK A+ + + G E + K LK + +LE
Sbjct: 1015 DLILCVPHLYSCLKDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLE 1074
Query: 1066 RIKLNGASQ 1074
+ K N S+
Sbjct: 1075 KAKANMPSK 1083
|
|
| ZFIN|ZDB-GENE-051120-174 ckap5 "cytoskeleton associated protein 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1065 (380.0 bits), Expect = 1.6e-160, Sum P(3) = 1.6e-160
Identities = 314/1064 (29%), Positives = 515/1064 (48%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + L + + + LG L KK V +SNA Q K L+
Sbjct: 11 PIDQKCEHKVWKARLSGYEEALKLFQKLDEKSPEWSKYLG-LIKKFVTESNAVAQLKGLE 69
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEK--AQAVFMLWVELEAVDVFLDV 132
A +A+++ A AG+ EV + K +PK K + ++++E+E +V D
Sbjct: 70 AALAFIENAHV-AGKTVGEVVSGVVNKVFN-QPKARAKELGTEICLMYIEIEKAEVVQDE 127
Query: 133 MEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLT 192
+ I+ + +AL EFG+KII K ++K+LP+LF+ +++ VR +K L
Sbjct: 128 LIKGLDNKNPKIVVACIEALRKALCEFGSKIITLKPVVKVLPKLFESREKAVRDEAKLLA 187
Query: 193 LELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQD---KELGQE 248
+E+ RWI +D ++ L + + KELE E V V TA + R +R++QD K Q+
Sbjct: 188 VEIYRWI-RDALRAPL-QNINSVQLKELEEEWVKVPATAPKQIRFLRSQQDLKAKFEQQQ 245
Query: 249 LISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAE 308
D G EE V ++D YEL++ V+IL+ L K F+E ++A KW ERK+A+
Sbjct: 246 AAGGDEADGDDEEVAEAV--QVDAYELLEAVEILSKLPKD-FYEKIEAKKWQERKEALEA 302
Query: 309 LTKLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFX 367
+ L ++ GD+ ++ R LKK+I D N+ + A + + LA GLR F +
Sbjct: 303 VEALTKNPKLESGDYGDLVRALKKVIGKDANVMLVSMAAKCLAGLATGLRKKFGTYAGLV 362
Query: 368 XXXXXXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427
V ++L + + A+ L ++ EDV + NK P ++ ++
Sbjct: 363 VPTILEKFKEKKPQVVQALQEAIDAVFLTTTLQ--NISEDVLAVMDNKNPSIKQQASLFL 420
Query: 428 TFCIETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486
+ + + K V K + ++ +ND PEVRDAAF L K +G + + +
Sbjct: 421 ARSFRHCTPSTLPKSVLKPFCAAFLKQVNDSAPEVRDAAFEALGTAMKVIGEKAVNPFLT 480
Query: 487 KLDDVRRNKLSE------MIAGSGGDVATGTSSARVQTSGGSVPSVEA-SESSFVRKSAA 539
+D ++ +K+ E +I GG G + + + + P VEA +++S K +A
Sbjct: 481 DVDKLKLDKIKECADKVELIGKKGG----GGGEKKERPAAKASPPVEAPAKTSGPPKKSA 536
Query: 540 SMLSGKRPVSAAPASKKGGPVK-PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598
P AA KKG P PSAK + K E E +E +E+S E E +
Sbjct: 537 -------PAKAAGPPKKGKPAAAPSAK--------SKKAPETKEIIE-TELSPEVCEEKA 580
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXX 658
+++PA + L SA WKERL ++ ++ VE + + + LV+++ PGW E N
Sbjct: 581 AAVLPASCMQLLDSANWKERLASMEEFQKAVEQMDKSEMPCQALVKMLAKKPGWKETNFQ 640
Query: 659 XXXXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
L A +F K ++ L G+ +++ D+K +A + LT EA +
Sbjct: 641 VMQMKLSIVG-LVAQKGQFSKTSALVVLDGLVDKIGDVKCGGNAKEALTAIGEACSLPWT 699
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
E++ I KNPK +E + W+ +A+++FG + + +K I+ K T L ++ A R +
Sbjct: 700 AEQVVSIAFAQKNPKNQAETLNWLANAMKEFGFAGINVKGFINNVK-TALGATNPAVRTS 758
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVP----KKT------- 827
I LLG ++ ++G ++ F D KPALLS +DAE+ K + P KK
Sbjct: 759 AIALLGVMYLYMGAPLRMFFEDEKPALLSQIDAEFVKMQGQSPPAPTRGAKKAGAEEDGD 818
Query: 828 VRAXXXXXXXXXXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
V LPR DIS K T +V + +WK+R E ++ V ++ EA K
Sbjct: 819 VADEDEADGGAGDIMDMLPRTDISDKITSEMVSKISDKNWKIRKEGLDEVAAVISEA-KF 877
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947
IQ A GEL L+GRL DSNK LV TL L +A AMGP++++ K + ++ LGD
Sbjct: 878 IQ-ANIGELPMALKGRLNDSNKLLVQQTLNILQQIAIAMGPSLKQHVKNLGIPVVTVLGD 936
Query: 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007
+K ++R + L+AW+ + + + + K R++L WLS++L L
Sbjct: 937 SKPNVRATAMATLNAWVEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLSEKLPTLRTV 996
Query: 1008 PDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050
P L P + D+S DVRK A+ + + G + + K
Sbjct: 997 PADLMLCVPHLYTCLEDRSGDVRKKAQDALPTFMMHLGFDKMTK 1040
|
|
| UNIPROTKB|F1M949 Ckap5 "Protein Ckap5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 856 (306.4 bits), Expect = 6.0e-143, Sum P(3) = 6.0e-143
Identities = 244/834 (29%), Positives = 395/834 (47%)
Query: 265 DVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFT 324
D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L + R+ GD+
Sbjct: 6 DEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEGLVRSPRLEAGDYA 64
Query: 325 EVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXXXXXXXXXXXTVA 383
E+ + LKK++ D N+ + A + + LA GLR F + V
Sbjct: 65 ELVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTILEKFKEKKPQVV 124
Query: 384 ESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-V 442
++L + + A+ L ++ EDV + NK P ++ T ++ + + + K +
Sbjct: 125 QALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSFRHCTSSTLPKSL 182
Query: 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502
K + ++ +ND PEVRDAAF L K VG + + + +D ++ +K+ E
Sbjct: 183 LKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKTVNPFLADVDKLKLDKIKE--CS 240
Query: 503 SGGDVATGTSSARVQTSGGSVPSV-EASESSFVRKSAASMLSGKRP--VSAAPASKKGGP 559
++ G S S P A+ S +SG +P + APA+K GGP
Sbjct: 241 EKVELVHGKKSGLAAEKKESKPLPGRAAASGAAGDKDTKDVSGPKPGPLKKAPATKAGGP 300
Query: 560 VKP--SAKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVW 615
K + GS T K E E EP E+S+E E + +++P + L S+ W
Sbjct: 301 PKKGKTTAPGGSASSGTKNKKGLETKEIAEP-ELSIEVCEEKASAVLPPTCIQLLDSSNW 359
Query: 616 KERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAATAT 675
KERL + ++ VE ++ + + LV+++ PGW E N +A
Sbjct: 360 KERLACMEEFQKAVELMERSEMPCQALVKMLAKKPGWKETNFQVMQMKLHIVALIAQKGN 419
Query: 676 KFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 735
F K + L G+ +++ D+K +A + LT +EA + E++ + KNPK
Sbjct: 420 -FSKTSAQIVLDGLVDKIGDVKCGNNAKEALTAIAEACMLPWTAEQVMSMAFSQKNPKNQ 478
Query: 736 SEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 795
SE + W+ +A+++FG S L +K I K T L ++ A R + I LLG ++ +VGP ++
Sbjct: 479 SETLNWLSNAIKEFGFSELNVKAFISNVK-TALAATNPAVRTSAITLLGVMYLYVGPSLR 537
Query: 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXX-----------XXXXXXX 844
D KPALLS +DAE++K + P + +
Sbjct: 538 MIFEDEKPALLSQIDAEFQKMQGQSPPAPTRGISKHSTSGTDEGDDGDEPGDGSNDVVDL 597
Query: 845 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL 904
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQP GEL L+GRL
Sbjct: 598 LPRVEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINEA-KFIQP-NIGELPTALKGRL 655
Query: 905 YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWL 964
DSNK LV TL L +A AMGP V++ K + IL LGD+K ++R L ++AW
Sbjct: 656 NDSNKILVQQTLNILQQLAVAMGPNVKQHVKNLGIPILTVLGDSKNNVRAAALATVNAWA 715
Query: 965 AAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA-MTD 1023
+ + + + K R++L WL+++L L P L P + + D
Sbjct: 716 EQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPMLRSTPTDLILCVPHLYSCLED 775
Query: 1024 KSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERIKLNGASQ 1074
++ DVRK A+ + + G E + K LK + +LE+ K N S+
Sbjct: 776 RNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKAKANMPSK 829
|
|
| DICTYBASE|DDB_G0268616 cepJ "centrosomal protein 224 kDa" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 4.1e-123, Sum P(5) = 4.1e-123
Identities = 153/563 (27%), Positives = 266/563 (47%)
Query: 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDAL 76
EDR+ HKNWK R +L + + E GP FKK +AD N Q++AL+ L
Sbjct: 12 EDRINHKNWKWRVSGLEELTTKFRNSIEGSGPLFNEWGPQFKKILADINPMSQERALEPL 71
Query: 77 IAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEX 135
A++ D ++A + K RP+ EK +L +E ++ + ++ +
Sbjct: 72 SAFIDRCDC-VNKFAASYVGVLVEKLFASTRPRAKEKTIECLLLTIEADSAEPVVEALLK 130
Query: 136 XXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLEL 195
+ + QAL FG K IP K ILK F+++D+ +R + L +E+
Sbjct: 131 GTSSTSPKILLASLAALTQALKTFGPKQIPVKLILKQFSPWFENRDKGIRDQASELFIEI 190
Query: 196 CRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISEDV 254
RWIGK + ++ E + K L+ + + + A P + R+E K L S+ +
Sbjct: 191 YRWIGKALIP-LISEALTPIQLKALQDQFEKLPTDPAVPLKYTRSEAAKALANA--SKGI 247
Query: 255 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL-TKLA 313
P +V EID Y L+ V+IL L S F+EG++A KW ER + + +L T L
Sbjct: 248 QAKP------EVVEEIDPYSLMTAVNILPKLT-SEFYEGLQAKKWQERSEQMDKLVTILT 300
Query: 314 STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXXXX 373
+T +I DF+E+C+ LKK++ DVN+ + +A+ +IG LA LR F+ +
Sbjct: 301 NTPKIETADFSELCKALKKILADVNVMIVQKAVVSIGLLADSLRGGFTSYVKPFITPILE 360
Query: 374 XXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433
+V +S+ T+ ++ ++L D+++++ ++++KVP ++ L ++ I
Sbjct: 361 KFKEKKTSVLQSVHTTMDSL-VGKSISLSDIIDELTATMQSKVPQIKQEVLVFICNSITN 419
Query: 434 SSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 492
+ K A + KV K I ME LND +RD A AA+ +G R + + ++D ++
Sbjct: 420 TKKPADITKVTKQLTKIFMEALNDTDSNIRDNASKAFAALGGIIGERAMTPYLNQIDPIK 479
Query: 493 RNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAP 552
K+ + + VAT + + + ++ SS +K AA+ + K + P
Sbjct: 480 AKKIKDNMPA----VATPVTITPQPLAPVDLKDIDLPVSSSNKKPAAATGNSKSSSTTTP 535
Query: 553 ASKKGG----PVKPSAKKDGSGK 571
+ P PS+ D K
Sbjct: 536 TGRSSNSSPLPPPPSSSDDIKNK 558
|
|
| UNIPROTKB|F1SIB5 F1SIB5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 2.0e-113, Sum P(3) = 2.0e-113
Identities = 167/533 (31%), Positives = 258/533 (48%)
Query: 557 GGPVKPS--AKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS 612
GGP K A + G+G T K E E VEP E+S+E E + +++PA + L S
Sbjct: 2 GGPPKKGKPAAQGGTGSTGTKNKKGLETKEIVEP-ELSIEVCEEKASAVLPAPCIQLLDS 60
Query: 613 AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAA 672
+ WKERL + ++ VE + + + LVR++ PGW E N +A
Sbjct: 61 SNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVMQMKLHIVALIAQ 120
Query: 673 TATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNP 732
F K + L G+ +++ D+K +A + LT +EA + E++ + KNP
Sbjct: 121 KGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEALTAIAEACMLPWTAEQVMSMAFSQKNP 179
Query: 733 KVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 792
K SE + W+ +A+++FG S L +K I K T L ++ A R + I LLG ++ +VGP
Sbjct: 180 KNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAITLLGVMYLYVGP 238
Query: 793 DIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXXXXXX-------- 844
++ F D KPALLS +DAE+EK + P + +
Sbjct: 239 SLRMFFEDEKPALLSQIDAEFEKMQGQNPPAPTRGISKHSTSGTDEGEDGDEPDDGGNDV 298
Query: 845 ---LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQP GEL L+
Sbjct: 299 VDLLPRTEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINEA-KFIQP-NIGELPTALK 356
Query: 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
GRL DSNK LV TL L +A AMGP +++ K + I+ LGD+K ++R L ++
Sbjct: 357 GRLNDSNKILVQQTLNILQQLAVAMGPNIKQHVKNLGIPIITVLGDSKNNVRAAALATVN 416
Query: 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA- 1020
AW + + + + K R++L WL+++L L P L P +
Sbjct: 417 AWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPTDLILCVPHLYSC 476
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERIKLN 1070
+ D++ DVRK A+ + + G E + K LK + +LE+ K N
Sbjct: 477 LEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKAKAN 529
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94FN2 | MOR1_ARATH | No assigned EC number | 0.7899 | 0.9898 | 0.9362 | yes | no |
| Q5N749 | MOR1_ORYSJ | No assigned EC number | 0.7440 | 0.9903 | 0.9278 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1871 | |||
| pfam12348 | 228 | pfam12348, CLASP_N, CLASP N terminal | 0.001 | |
| pfam02985 | 31 | pfam02985, HEAT, HEAT repeat | 0.003 |
| >gnl|CDD|221541 pfam12348, CLASP_N, CLASP N terminal | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 30/187 (16%)
Query: 299 WSERKDAVAELTKL----ASTKRIAPGDFTEVCRTLK----KLITDVNIAVAVEAIQAIG 350
W R+ A+ +L + A P +F + L K ++ + ++ +
Sbjct: 21 WDAREKAIIKLRSIIKGNAPED--YPSEFLAGLKQLLEGILKALSSLRTTLSSTGCHLLK 78
Query: 351 NLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKT 410
LA L H + LLP LL+ + K ++++ Q + + V ++
Sbjct: 79 ELAIQLGHHLDPFAEILLPTLLKLCGDTKKIISQNANQAVADILSN-----VSYTPRLEL 133
Query: 411 SV-------KNKVPLVRSLTLNW-----VTFCIETSSKAAVLKVHKDYVPICMECLNDGT 458
KN P R + W + S + Y + L D
Sbjct: 134 QHISAALQDKNVQP--REYSAIWLKILLIRHGHHKSHIEHHGGL-DLYEKSLKKGLEDAN 190
Query: 459 PEVRDAA 465
P VR+ A
Sbjct: 191 PGVRETA 197
|
This region is found at the N terminal of CLIP-associated proteins (CLASPs). CLASPs are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules. In yeast, Drosophila, and Xenopus, a single CLASP orthologue is present. In mammals, a second paralogue (CLASP2) exists which has some functional overlap with CLASP1. Length = 228 |
| >gnl|CDD|202500 pfam02985, HEAT, HEAT repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.003
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 447 VPICMECLNDGTPEVRDAAFSVLAAIAKSV 476
+P+ +E LND PEVR+AA L A+A+ +
Sbjct: 2 LPLLLELLNDPDPEVREAAAEALGALAEVL 31
|
The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1871 | |||
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 100.0 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 100.0 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 99.84 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 99.7 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.48 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.43 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.36 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 98.97 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 98.97 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 98.73 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 98.73 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 98.67 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 98.62 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 98.56 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 98.53 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 98.41 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.39 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.36 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 98.34 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 98.32 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.19 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 98.12 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.97 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 97.97 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.97 | |
| PRK09687 | 280 | putative lyase; Provisional | 97.95 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 97.88 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 97.81 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 97.8 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 97.8 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 97.72 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 97.68 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 97.67 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 97.64 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 97.48 | |
| PRK09687 | 280 | putative lyase; Provisional | 97.31 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.3 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 96.96 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 96.72 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 96.72 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 96.7 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 96.41 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 96.23 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 96.17 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 96.16 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 96.11 | |
| PF00790 | 140 | VHS: VHS domain; InterPro: IPR002014 The VHS domai | 95.85 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 95.78 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 95.76 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 95.68 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 95.65 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 95.61 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 95.54 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 95.53 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 95.52 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 95.25 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 95.17 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 95.13 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 95.05 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 94.91 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 94.82 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 94.53 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 94.38 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 94.36 | |
| cd03565 | 141 | VHS_Tom1 VHS domain family, Tom1 subfamily; The VH | 94.25 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 94.02 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 93.99 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 93.89 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 93.88 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 93.68 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 93.43 | |
| cd00197 | 115 | VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil | 92.13 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 91.88 | |
| KOG1087 | 470 | consensus Cytosolic sorting protein GGA2/TOM1 [Int | 91.81 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 91.61 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 91.34 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 91.28 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 91.14 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 90.92 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 90.85 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 90.73 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 90.58 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 90.28 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 90.03 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 89.63 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 89.24 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 88.99 | |
| cd00197 | 115 | VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil | 88.85 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 88.52 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 87.74 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 87.66 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 87.56 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 86.85 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 86.64 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 86.33 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 86.26 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 85.7 | |
| PF00790 | 140 | VHS: VHS domain; InterPro: IPR002014 The VHS domai | 85.67 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 85.64 | |
| KOG1087 | 470 | consensus Cytosolic sorting protein GGA2/TOM1 [Int | 85.38 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 85.38 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 84.7 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 84.38 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 82.93 | |
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 82.64 | |
| KOG2199 | 462 | consensus Signal transducing adaptor protein STAM/ | 82.57 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 82.56 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 82.55 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 82.29 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 82.22 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 82.12 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 81.37 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 81.3 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 81.22 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 81.14 | |
| cd03565 | 141 | VHS_Tom1 VHS domain family, Tom1 subfamily; The VH | 81.13 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 80.64 |
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-69 Score=692.29 Aligned_cols=770 Identities=26% Similarity=0.299 Sum_probs=646.9
Q ss_pred cHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh-cCCCccchHHHHHHHHHHHHHHHHhcCCCCccc
Q 000200 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCM-LPGWSEKNVQVQQQVIEVINYLAATATKFPKKC 681 (1871)
Q Consensus 603 ~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~-~PgwkesNfqV~~~~leil~~la~~~~~fs~~~ 681 (1871)
+.+....+.++.||.|++++..+..+.+..+..+..+..+++.... .++|++.||||+--.+.++..-..+... +...
T Consensus 7 ~~~~~~~l~~~~w~~~~~~~~ql~~~~~~~~~~~a~a~~~~~~~s~~~~l~~a~~~~l~~~~~~~l~~~~~~~~~-~~~~ 85 (815)
T KOG1820|consen 7 SVGTDSELCSQSWKNRLEAWKQLLTDSNVGAQEQAAALRLLRDASAISALLNAKNIQLLSFGLKCLDSKRVNIRD-TKTQ 85 (815)
T ss_pred ccccchhhhhhhhhhhHHHHHHHhhhcchhhhHhHHHHHHHHHhhcchhhhhccceeeccchhhhcccccccccC-cchh
Confidence 4455555889999999999999999998866666666777776643 4789999999999998888843221111 2222
Q ss_pred hhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHH
Q 000200 682 VVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID 761 (1871)
Q Consensus 682 ~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~ 761 (1871)
+-.++ .|+.|.+-...+..+++.+++.....+++..++..+..+++|++..+++.|+...+.+||+.....+.+++
T Consensus 86 ~~~~i----~~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l~D~nvr~~~~~l~v~ 161 (815)
T KOG1820|consen 86 SLLRI----GKLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSLADKNVRSEASKLLVE 161 (815)
T ss_pred HHHHH----HHhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCccccccccchhhcccchh
Confidence 22233 78999999999999999999999999999999999999999999999999999999999998888888898
Q ss_pred HHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCC
Q 000200 762 FCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGG 841 (1871)
Q Consensus 762 ~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~ 841 (1871)
+.+-.|.++.+...|.++..+++++..|.|.....|+.+.+|...+....|++++..+....|.|+++...+........
T Consensus 162 i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~ 241 (815)
T KOG1820|consen 162 IYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDN 241 (815)
T ss_pred hhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccccccccccccCCCCCCccc
Confidence 88877899999999999999999999999999999999999999999999999999888888888877655544333445
Q ss_pred CCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHH
Q 000200 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGA 921 (1871)
Q Consensus 842 ~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~ 921 (1871)
-|++||+||+++|++.|.++|.|++||+|+||||.+.++|+++++.++.+.+|++...++.|++|+|.|++++|+.||+.
T Consensus 242 ~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ 321 (815)
T KOG1820|consen 242 FDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILEL 321 (815)
T ss_pred cccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999875578999889999999999999999999999999999
Q ss_pred HHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHh
Q 000200 922 VASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQL 1001 (1871)
Q Consensus 922 lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l 1001 (1871)
||.+||..|.+|++.++|.++.+|+|+|+.+|++++.|+|+|+++++++.+.++|.++|+++ ||+.|.+++.|+.++|
T Consensus 322 ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~k--np~~k~~~~~~l~r~~ 399 (815)
T KOG1820|consen 322 IAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGK--NPQIKGECLLLLDRKL 399 (815)
T ss_pred HHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999976 7999999999999999
Q ss_pred ccCCC---C-cchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCCC---
Q 000200 1002 TGLSG---F-PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074 (1871)
Q Consensus 1002 ~~~~~---~-~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~~--- 1074 (1871)
..+.. . .....+++.++.+.+|++.|||++|.++++++|+++|++.+.+.+.++++. .+....++.++..
T Consensus 400 ~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~---~~~~~~E~~~p~~~~~ 476 (815)
T KOG1820|consen 400 RKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQ---DIKPKEEKLKPLLHFL 476 (815)
T ss_pred hhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccc---hhhhhhhhcccccccc
Confidence 98873 2 234555555888999999999999999999999999999999999999987 3344445555432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChHHHH----hh
Q 000200 1075 VSMGPTSKSSSKVPKSASNGVSKH-----GNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRE----RM 1145 (1871)
Q Consensus 1075 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~----~~ 1145 (1871)
..+.+++++..+.....+...+.. ....+++...|.+.+...+. .. ....++.+.. .+..+++|. ++
T Consensus 477 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~~~-~~-~~~~~~~~~~--~~~~~~~~~~~~~~r 552 (815)
T KOG1820|consen 477 AAPKEKSSAPDPQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSANSS-RK-IPEAAEAPKL--QLSLKEQRVVLGTRR 552 (815)
T ss_pred ccCCCcCCCCCccccccceecccccccCCCCCCCccccCCCcccccccc-cC-Ccchhhcccc--ccccccchhhhhhhh
Confidence 222222222222111111000000 00001111112221111100 00 0011112212 456788886 56
Q ss_pred hhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHhHHHHHHHHHHhccccch
Q 000200 1146 VVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNT 1225 (1871)
Q Consensus 1146 ~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~~lDlllkw~tlr~~dtN~ 1225 (1871)
.+.+|++..|..+..+. |...+...+...|||.||+.|.++++.++.....+.++..++.|++++|+++||+++|+
T Consensus 553 ~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~lr~~~~~~ 628 (815)
T KOG1820|consen 553 KVSPKTVVAPVDDKKEP----SKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSIQDLLLEWLVLRFEETNE 628 (815)
T ss_pred ccCccccccchhhhhcc----cccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchHHhhhhHHHHHHhhcccH
Confidence 78889998887666655 88899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCCh
Q 000200 1226 TCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNN 1305 (1871)
Q Consensus 1226 ~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~ 1305 (1871)
+++.+.++|+...|+.+...+|.++..|+..|.|++..+.|..+|.+|+.++.|.+....++...++.+++.+++..||.
T Consensus 629 ~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~s~~~~~~~~~~~l~~~~~ 708 (815)
T KOG1820|consen 629 ALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVLSVLMMVPSLREALELKER 708 (815)
T ss_pred HhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhccccccchhhHhhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHHhhcCcccCccchHHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHHhccCCHHHHhhHHHHH
Q 000200 1306 RTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRF 1385 (1871)
Q Consensus 1306 r~R~Ecl~el~~li~~~G~~v~~~~Kal~~ia~~i~drD~~VR~AALn~l~~~y~~~Gd~v~k~~g~ls~k~~s~Leer~ 1385 (1871)
++|.||++.+.+++..-|.....-.+++..|+-...++|..+|+++.+++...|.+.|+.+|++.+.+.+.|+++++.||
T Consensus 709 ~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 788 (815)
T KOG1820|consen 709 EIRSEELLVIKLLFSSEGTSILKSLRVLNIIALLVKASDGKSSSKVKKTSWKPFDFLPDPSWKISILQADTDKSRIEKMF 788 (815)
T ss_pred hhHHHHhhhhheeeccCCcchhhhHhhhhcccccccccchhhhhhhhcccccccccccchHHHHHHHhhHHHhhhHHHhc
Confidence 99999999999999999987644456789999999999999999999999999999999999999999999999999999
Q ss_pred HHhHH
Q 000200 1386 KWKVR 1390 (1871)
Q Consensus 1386 kr~~~ 1390 (1871)
++..+
T Consensus 789 ~~~~~ 793 (815)
T KOG1820|consen 789 PKERR 793 (815)
T ss_pred Ccccc
Confidence 98755
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-56 Score=568.80 Aligned_cols=754 Identities=19% Similarity=0.231 Sum_probs=542.3
Q ss_pred ccCcCchhHHHHHHHHHHHHhhhcCCCCchhhhhhhhchhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhh-hhHHHHH
Q 000200 19 RLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY-AKEVCDA 97 (1871)
Q Consensus 19 rl~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~DsN~~aqek~leal~~~l~~a~~~~~~~-~~~~~~~ 97 (1871)
++..++||.|+++|.. +++|+|+.+|+.+ .++..|+..++...... -...+-.
T Consensus 13 ~l~~~~w~~~~~~~~q-------------------------l~~~~~~~~~~~a-~a~~~~~~~s~~~~l~~a~~~~l~~ 66 (815)
T KOG1820|consen 13 ELCSQSWKNRLEAWKQ-------------------------LLTDSNVGAQEQA-AALRLLRDASAISALLNAKNIQLLS 66 (815)
T ss_pred hhhhhhhhhhHHHHHH-------------------------HhhhcchhhhHhH-HHHHHHHHhhcchhhhhccceeecc
Confidence 3777888888777653 5578899999999 99999998876644333 2234556
Q ss_pred HHHhhhcC-ChhhHHHHHHHHHHHHhhcchhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccChhHHHhhchhh
Q 000200 98 IAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPEL 176 (1871)
Q Consensus 98 lveK~L~~-r~~tk~~a~e~~l~~vE~e~~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~~vv~~K~ilk~l~~l 176 (1871)
..++||.. |+.+.+..+++.+.....++...+++.+.+.++-|.||.+++++..+..++.+||...++++.+++.++.+
T Consensus 67 ~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l 146 (815)
T KOG1820|consen 67 FGLKCLDSKRVNIRDTKTQSLLRIGKLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSL 146 (815)
T ss_pred chhhhcccccccccCcchhHHHHHHHhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCccc
Confidence 67899985 88888888898888888889999999999999999999999999999999999999999999999999999
Q ss_pred hcccChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCC-CCCcchhhhHHhHhhhhhhcccCCC
Q 000200 177 FDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT-ARPTRKIRAEQDKELGQELISEDVG 255 (1871)
Q Consensus 177 f~~~dk~VR~ea~~L~vely~wlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~-~~P~R~~Rs~q~~~~~~~~~~~~~~ 255 (1871)
+ |+|||.++.+|+++||||+|.. .+..++..--+.++.++...+.+.... ....|.+-+.+..........+...
T Consensus 147 ~---D~nvr~~~~~l~v~i~r~~G~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~ 222 (815)
T KOG1820|consen 147 A---DKNVRSEASKLLVEIYRWTGDA-SKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLE 222 (815)
T ss_pred c---ccccchhhcccchhhhhhcCCC-cCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhccc
Confidence 9 9999999999999999999974 667776556666677776666654321 1111111111110000000000000
Q ss_pred CCCC--CCCCCCCCCCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhhcCC--CCCCChHHHHHHHH
Q 000200 256 PGPS--EESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR--IAPGDFTEVCRTLK 331 (1871)
Q Consensus 256 ~~~~--~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~pK--i~~~dy~eL~~~Lk 331 (1871)
..+. ..........+|.||+++||||++|++ .+|.+.|.++|||+|+||||.+.+++++++ +..+.|+.+...++
T Consensus 223 ~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~-~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~k 301 (815)
T KOG1820|consen 223 KPERGLQRSKSGFTSPIDNFDLLPRVDILSKIT-KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLK 301 (815)
T ss_pred ccccccccccCCCCCCccccccCchhhhhhhcC-hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHH
Confidence 0000 001111122379999999999999999 589999999999999999999999998888 55677777777888
Q ss_pred HHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHH
Q 000200 332 KLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTS 411 (1871)
Q Consensus 332 k~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~a 411 (1871)
.+..|+|++||++|++||+.||++||..|.+|++.++|.+|++|||||+.+++++++|+|+|+.. +.++++.+.|.++
T Consensus 302 i~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns--~~l~~~~~~I~e~ 379 (815)
T KOG1820|consen 302 IRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS--TPLSKMSEAILEA 379 (815)
T ss_pred HhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999985 7999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHhhCCh-hHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCH
Q 000200 412 VKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490 (1871)
Q Consensus 412 l~~KnP~vk~etl~~L~r~l~~~~~-~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~ 490 (1871)
++||||++|.+|+.|+.||+...+. .+....++.++|.++++.+|++++||+||.++++++|+++|++.++.+|.++++
T Consensus 380 lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 380 LKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDK 459 (815)
T ss_pred hcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcc
Confidence 9999999999999999999998763 333356789999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchh-hhhhhhhhcccCCCC-CCCCCCCCCCCCCCCCCCCCC
Q 000200 491 VRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS-FVRKSAASMLSGKRP-VSAAPASKKGGPVKPSAKKDG 568 (1871)
Q Consensus 491 ~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p-~~~~~~~~k~~~~~~~~~~~~ 568 (1871)
.-++.+.|.+...-.....+.++..++. +..+.+. .++...+......++ ++.+|.... ...++...+..
T Consensus 460 ~~~~~~~E~~~p~~~~~~~~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~s-s~~~~~~~~~~ 531 (815)
T KOG1820|consen 460 QDIKPKEEKLKPLLHFLAAPKEKSSAPD-------PQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLS-SANSSRKIPEA 531 (815)
T ss_pred chhhhhhhhccccccccccCCCcCCCCC-------ccccccceecccccccCCCCCCCccccCCCccc-ccccccCCcch
Confidence 7566666655431000000000000110 0000000 000000000000000 000000000 00000000000
Q ss_pred --CCCcccccCCCCCCC-------CC-CCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHh-hhccch
Q 000200 569 --SGKQETSKLTEAPED-------VE-PSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQ 637 (1871)
Q Consensus 569 --~~~~~~s~~~~~~~~-------~~-~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~-~~~~~~ 637 (1871)
.+....+ ..+.... .. ..-...+|..+.+...++......+++.|++...++.+.+...-.. ......
T Consensus 532 ~~~~~~~~~-~~~~~~~~~~~r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~ 610 (815)
T KOG1820|consen 532 AEAPKLQLS-LKEQRVVLGTRRKVSPKTVVAPVDDKKEPSKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTS 610 (815)
T ss_pred hhccccccc-cccchhhhhhhhccCccccccchhhhhcccccccchhhhhccCccchhhhhhhhhhhhhhhcccccccch
Confidence 0000000 0000000 00 0112346666667777888889999999999999999999855444 333334
Q ss_pred hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC----CCccchhhhccchhhccccch--hhhHHHHHHHHHHH
Q 000200 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK----FPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSE 711 (1871)
Q Consensus 638 ~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~----fs~~~~~~~l~~lveKlgD~K--~r~~a~e~L~~~aE 711 (1871)
..++++.|+. -+|.|+|-++..+.++++........- -+........+-+..+.|..+ .+.....+.....+
T Consensus 611 ~~~~~l~~~~--lr~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~ 688 (815)
T KOG1820|consen 611 IQDLLLEWLV--LRFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFE 688 (815)
T ss_pred HHhhhhHHHH--HHhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhh
Confidence 4567788876 368999999999999998876654211 111112222233333555554 45666667777888
Q ss_pred hhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhC
Q 000200 712 AVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG 791 (1871)
Q Consensus 712 ~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G 791 (1871)
+++..-....+++.+ ..|+-.++.+|+..+...+..-|+..+...-+.....- +.......+|..+.+.+..+|.+.|
T Consensus 689 v~s~~~~~~~~~~~l-~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (815)
T KOG1820|consen 689 VLSVLMMVPSLREAL-ELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIAL-LVKASDGKSSSKVKKTSWKPFDFLP 766 (815)
T ss_pred hccccccchhhHhhc-cccchhhHHHHhhhhheeeccCCcchhhhHhhhhcccc-cccccchhhhhhhhccccccccccc
Confidence 888888888888885 79999999999999999999999876555444444333 3677888999999999999999999
Q ss_pred chhHhhhhcchHHHHHHHHHHHhcCCC
Q 000200 792 PDIKGFLADVKPALLSALDAEYEKNPF 818 (1871)
Q Consensus 792 ~~l~~~l~dlkpall~~ie~EF~K~~~ 818 (1871)
++++.......+.+.+.++..|.+-..
T Consensus 767 ~~~~~~~~~~~~~~~s~~~~~~~~~~~ 793 (815)
T KOG1820|consen 767 DPSWKISILQADTDKSRIEKMFPKERR 793 (815)
T ss_pred chHHHHHHHhhHHHhhhHHHhcCcccc
Confidence 999999999999999999999987543
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-20 Score=213.57 Aligned_cols=210 Identities=28% Similarity=0.415 Sum_probs=149.7
Q ss_pred CCCCchhhhhhhhccChHHHHHHHHHHHHhhhcC--CCCCCChHHHHH----HHHHHhccccHHHHHHHHHHHHHHHHHh
Q 000200 283 TPLEKSGFWEGVKATKWSERKDAVAELTKLASTK--RIAPGDFTEVCR----TLKKLITDVNIAVAVEAIQAIGNLARGL 356 (1871)
Q Consensus 283 ~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~p--Ki~~~dy~eL~~----~Lkk~l~DsNv~vv~~A~~~i~~lA~gL 356 (1871)
..+. +.|+.+..+.+|++|.+||+.|..++... .-..++|.+.++ .+.+.+.|.|..|+..|+.|++.|+..|
T Consensus 6 ~~~~-~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l 84 (228)
T PF12348_consen 6 EEIL-AALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL 84 (228)
T ss_dssp GGS--TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455 47878888999999999999999987644 222233444443 6667888999999999999999999999
Q ss_pred ccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC-hhhh-HHHHHHHhhcCCchhHHHHHHHHHHHHhhC
Q 000200 357 RTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-LVDV-VEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434 (1871)
Q Consensus 357 r~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~-l~~~-~e~i~~al~~KnP~vk~etl~~L~r~l~~~ 434 (1871)
+..|.+|+..++|++|++++++|..|++++..||++++.+ | + ...+ .+.+..+++||||++|.+++.||..++...
T Consensus 85 ~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~-~-~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 85 GSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIES-C-SYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp GGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTT-S--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred hHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH-C-CcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999997 4 5 5666 788889999999999999999999999987
Q ss_pred C--hhHHH--HhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHH
Q 000200 435 S--KAAVL--KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496 (1871)
Q Consensus 435 ~--~~~~~--~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI 496 (1871)
+ ...+. ..++.+++.+.++++|++++||++|..++..+++++|++. ..+++.||+..++.+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 163 GSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKYL 227 (228)
T ss_dssp ----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred cchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhcccccC
Confidence 7 33332 2357899999999999999999999999999999999986 566799998777655
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=183.20 Aligned_cols=208 Identities=21% Similarity=0.325 Sum_probs=142.9
Q ss_pred CCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccc----hHHHHhhhccchhHhHHHHHHHHHHHHHHhcCh
Q 000200 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE----LFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (1871)
Q Consensus 853 kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~ge----L~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~ 928 (1871)
.|...|.++..+.||+.|.|||+.|..++....+.-.+..+.+ +...+...+.|.|..|+..|+.+++.++..+|.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 4555666777999999999999999999985311111111222 223666899999999999999999999999999
Q ss_pred hHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc-chhh-hHHHHHHHhcccCCcchHHHHHHHHHHHhccCCC
Q 000200 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKM-VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (1871)
Q Consensus 929 ~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g-l~~~-~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~ 1006 (1871)
.|+.|+..++|.++++++|+|+.+|++|.+||++++..++ ...+ ++.+...+.+. ||..|.+.+.||...+...+.
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSK--NPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT---
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999 5666 66777777765 799999999999999988872
Q ss_pred -Ccc------hhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHH
Q 000200 1007 -FPD------AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALI 1063 (1871)
Q Consensus 1007 -~~~------~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i 1063 (1871)
... ...+++.+..+|+|.+++||++|..++..+++++|+.+ ...++.|+|..+..+
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKYL 227 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhcccccC
Confidence 111 24566678889999999999999999999999999997 445577777665543
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-07 Score=122.74 Aligned_cols=515 Identities=17% Similarity=0.195 Sum_probs=345.1
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccccccc-hhh
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRF 366 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y-~~~ 366 (1871)
.+...+-|+.=..|++|=+.++.+...++ +...|..++. -+|-.+-++|+=.+..+..++=+....- ...
T Consensus 8 qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s 79 (1075)
T KOG2171|consen 8 QLLQQLLSPDNEVRRQAEEALETLAKTEP--------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS 79 (1075)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhhcccc--------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 35556777777889999999988776555 6788888988 8888999999988888888754444433 223
Q ss_pred hHHHHHHH-hccCCHHHHHHHHHHHHHHHHhcC-CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhh
Q 000200 367 LLPVLLEK-LKEKKPTVAESLTQTLQAMHKAGC-LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (1871)
Q Consensus 367 ~~~~lLek-lKEKK~~V~eAl~~aLda~~~~~~-~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k 444 (1871)
+-..||+. ++|.+++||.++...+-.++..-- -.-.+++.-+..+.++.||+.|+-.+..|.-+....+ ..+...++
T Consensus 80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~-~~~~~~~~ 158 (1075)
T KOG2171|consen 80 IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFG-NTLQPHLD 158 (1075)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhc-cccchhHH
Confidence 44455544 699999999999999999998610 0233566777778899999999888887776665433 22335668
Q ss_pred hhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC-hhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCC
Q 000200 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (1871)
Q Consensus 445 ~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G-e~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1871)
.+.+.+.+|++|.+..||-+|..+++++...+. ++...+....+=|.-..-..+.+.-
T Consensus 159 ~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~--------------------- 217 (1075)
T KOG2171|consen 159 DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQD--------------------- 217 (1075)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhc---------------------
Confidence 899999999999999999999999999988774 2222222221111111111111100
Q ss_pred CCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCc
Q 000200 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (1871)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~ 603 (1871)
..+++
T Consensus 218 ------------------------------------------------------------------~d~~~--------- 222 (1075)
T KOG2171|consen 218 ------------------------------------------------------------------GDDDA--------- 222 (1075)
T ss_pred ------------------------------------------------------------------cchHH---------
Confidence 00000
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcC-------
Q 000200 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD-QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT------- 675 (1871)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~-~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~------- 675 (1871)
-..+++.|.+.++.....- ...+-++.+-..--+=+|-|=-+....|+++..+++.++
T Consensus 223 --------------a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~ 288 (1075)
T KOG2171|consen 223 --------------AKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLA 288 (1075)
T ss_pred --------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhch
Confidence 0112222333333321111 111112222111112245555677788888888887643
Q ss_pred CCCccchhhhccchhhcccc--------------chhhhHHHHHHHHHHHhhchHhHHHHHHHhh---hhcCChhhHHHH
Q 000200 676 KFPKKCVVLCLLGISERVAD--------------IKTRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEG 738 (1871)
Q Consensus 676 ~fs~~~~~~~l~~lveKlgD--------------~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~---~~~KnPKv~~e~ 738 (1871)
.+..+.+..++.-.+|-..| --....|.++|-.++=..|++.|+..+++.+ ..+-++|-|..+
T Consensus 289 ~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~Aa 368 (1075)
T KOG2171|consen 289 LLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAA 368 (1075)
T ss_pred hhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHH
Confidence 24445555555555555555 1245677888999999999999888776644 578899999999
Q ss_pred HHHHHHHHHHhccCc-cchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhh-hcchHHHHHHHHHHHhcC
Q 000200 739 ILWMVSAVEDFGVSH-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEKN 816 (1871)
Q Consensus 739 l~wl~~ai~eFG~~~-~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l-~dlkpall~~ie~EF~K~ 816 (1871)
|.-++.+-+-.+=.. =++..+++.+... |.++.|-||-+|.+.+|-|---++|.+-.+. +-+.|++...++..
T Consensus 369 L~Als~i~EGc~~~m~~~l~~Il~~Vl~~-l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~---- 443 (1075)
T KOG2171|consen 369 LLALSVIAEGCSDVMIGNLPKILPIVLNG-LNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST---- 443 (1075)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc----
Confidence 999999887443111 1566888888884 9999999999999999999999999887666 66777777766643
Q ss_pred CCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHc-ccCCCCCCccc
Q 000200 817 PFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA-NKRIQPAGTGE 895 (1871)
Q Consensus 817 ~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~a-nkrI~p~~~ge 895 (1871)
++ . ++-.-|--++-...+++ +.-|.|=+ ..
T Consensus 444 --~~-------~---------------------------------------rV~ahAa~al~nf~E~~~~~~l~pYL-d~ 474 (1075)
T KOG2171|consen 444 --QN-------V---------------------------------------RVQAHAAAALVNFSEECDKSILEPYL-DG 474 (1075)
T ss_pred --Cc-------h---------------------------------------HHHHHHHHHHHHHHHhCcHHHHHHHH-HH
Confidence 11 1 12222222222233332 23344543 55
Q ss_pred hHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccC----chhHHHHHHHHHHHHHHhccch
Q 000200 896 LFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN----KKHMRECTLTVLDAWLAAVHLD 970 (1871)
Q Consensus 896 L~~aLk~rl-~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~----K~~vR~aa~~alda~~~~~gl~ 970 (1871)
|+.-+=.+| .-.++.++.+++..|+.+|.|++.+|.+|...++|-+...|... ...+|....+|+..+..++|=+
T Consensus 475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke 554 (1075)
T KOG2171|consen 475 LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKE 554 (1075)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhh
Confidence 666333334 56677888899999999999999999999999999998887654 4688899999999999999988
Q ss_pred hhhHHH
Q 000200 971 KMVPYV 976 (1871)
Q Consensus 971 ~~~~~i 976 (1871)
.|.|..
T Consensus 555 ~F~~~a 560 (1075)
T KOG2171|consen 555 KFLPLA 560 (1075)
T ss_pred hhhHhH
Confidence 888753
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-08 Score=131.59 Aligned_cols=396 Identities=16% Similarity=0.220 Sum_probs=259.4
Q ss_pred chhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhhhHHHHHHHHhhhc--CChhhHHHHHHHHHHHHhhc---chh-hH
Q 000200 56 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELE---AVD-VF 129 (1871)
Q Consensus 56 l~kk~v~DsN~~aqek~leal~~~l~~a~~~~~~~~~~~~~~lveK~L~--~r~~tk~~a~e~~l~~vE~e---~~~-~v 129 (1871)
++-.-+++.|..-+|.|+-.+..+.+.-+....-+- .-+-++..+|++ +++ .|-.|...+-.|++.- +.+ .-
T Consensus 122 ~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~-~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~ 199 (1075)
T KOG2171|consen 122 FLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL-DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDK 199 (1075)
T ss_pred HHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH-HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHH
Confidence 333458999999999999988887766444322222 234567799998 466 7776666666666542 222 22
Q ss_pred HHHHHH--------HhhccCchhHHHHHHHHHHHHHhhCCCccC--hhHHHhhchhhhccc--ChhHHHHHHHHHHHHHH
Q 000200 130 LDVMEK--------AIKNKVAKAVVPAIDVMFQALSEFGAKIIP--PKRILKMLPELFDHQ--DQNVRASSKGLTLELCR 197 (1871)
Q Consensus 130 ~e~ll~--------~~~~K~PKvvaaai~~l~~~l~~FG~~vv~--~K~ilk~l~~lf~~~--dk~VR~ea~~L~vely~ 197 (1871)
+..++| ....-+-++...++.++.+++..++- .+. +..|++..=++..+. |..+|.-|..+++.+-+
T Consensus 200 ~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e 278 (1075)
T KOG2171|consen 200 FRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSE 278 (1075)
T ss_pred HHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 233444 33344456667888888888888774 443 566788888887765 67899999999999988
Q ss_pred hhCCchhhH--HHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCcccc
Q 000200 198 WIGKDPVKT--ILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYEL 275 (1871)
Q Consensus 198 wlG~~~lk~--~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl 275 (1871)
+ -|...|- .+.+.|=++.++....+-. ...-.+ +...++++.-+||.+
T Consensus 279 ~-Ap~~~k~~~~~~~~lv~~~l~~mte~~~----------------------------D~ew~~-~d~~ded~~~~~~~~ 328 (1075)
T KOG2171|consen 279 Y-APAMCKKLALLGHTLVPVLLAMMTEEED----------------------------DDEWSN-EDDLDEDDEETPYRA 328 (1075)
T ss_pred h-hHHHhhhchhhhccHHHHHHHhcCCccc----------------------------chhhcc-ccccccccccCcHHH
Confidence 8 2211111 1112222232222110000 000000 000011111233332
Q ss_pred -----------CCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhh-cCCCCCCChHHHHHHHHHHhccccHHHHH
Q 000200 276 -----------VDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAV 343 (1871)
Q Consensus 276 -----------~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~ 343 (1871)
+++.-|++.+= +-+...+.|.+|++|+.+|-+|-.+.. ..+.-.+....++.+.-.-+.|..-.|--
T Consensus 329 A~~~lDrlA~~L~g~~v~p~~~-~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~ 407 (1075)
T KOG2171|consen 329 AEQALDRLALHLGGKQVLPPLF-EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRY 407 (1075)
T ss_pred HHHHHHHHHhcCChhhehHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Confidence 22333443332 345566799999999999999988763 55555567888999999999999999999
Q ss_pred HHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHH--HHHHHHHHHHHHHHhcCCC------hhhhHH-HHHHHhhc
Q 000200 344 EAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT--VAESLTQTLQAMHKAGCLN------LVDVVE-DVKTSVKN 414 (1871)
Q Consensus 344 ~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~--V~eAl~~aLda~~~~~~~~------l~~~~e-~i~~al~~ 414 (1871)
.|+++||.+++-+.+.|.+|.+..+|+.|--..|.-.+ |..++..||+.++.. |.. |+.+++ -+...+++
T Consensus 408 AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~-~~~~~l~pYLd~lm~~~l~~L~~~ 486 (1075)
T KOG2171|consen 408 AALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE-CDKSILEPYLDGLMEKKLLLLLQS 486 (1075)
T ss_pred HHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999888777777666555 445666677766665 533 445555 33345567
Q ss_pred CCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhC----CCCHHHHHHHHHHHHHHHHHhChhHHHHHhhc
Q 000200 415 KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN----DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEK 487 (1871)
Q Consensus 415 KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~----Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~ 487 (1871)
.+|.++.++..=|+..-.... ..+.++.+.++|.+.+.|. +..-++|-...+|++.+-..||.+.+.++.+.
T Consensus 487 ~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~e 562 (1075)
T KOG2171|consen 487 SKPYVQEQAVTAIASVADAAQ-EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEE 562 (1075)
T ss_pred CchhHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHH
Confidence 789999988887776554332 3345677888998888873 34466777788999999999998777777653
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-07 Score=119.07 Aligned_cols=876 Identities=18% Similarity=0.213 Sum_probs=458.7
Q ss_pred cccccCcCchhHHHHHHHHHHHHhhh----cCCCCchhhhhhhhchhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhh
Q 000200 16 WEDRLLHKNWKVRNEANIDLAALCDS----ITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYA 91 (1871)
Q Consensus 16 l~erl~hK~WKaRl~ayeel~~~f~~----~~d~~d~~~~~~~~l~kk~v~DsN~~aqek~leal~~~l~~a~~~~~~~~ 91 (1871)
|-|++.++.=-=|--|-.+|.+..+. +.+++ +.+....+-|.+.|+|--+|.-|+.++--++.+-.. ...
T Consensus 10 LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dS---e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke---~~l 83 (1233)
T KOG1824|consen 10 LLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDS---ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKE---DQL 83 (1233)
T ss_pred HHHHccCCCcchhhhhHHHHHHHHHhhhhhccccc---hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchH---HHH
Confidence 44555555555677777777776652 22222 333334455789999999999999998766654322 224
Q ss_pred hHHHHHHHHhhhcCChhhHH-HHHHHHHHHHhhc-c-----hhhHHHHHHHHhhccCch------hHHHHHHHHHHHHHh
Q 000200 92 KEVCDAIAAKCLTGRPKTVE-KAQAVFMLWVELE-A-----VDVFLDVMEKAIKNKVAK------AVVPAIDVMFQALSE 158 (1871)
Q Consensus 92 ~~~~~~lveK~L~~r~~tk~-~a~e~~l~~vE~e-~-----~~~v~e~ll~~~~~K~PK------vvaaai~~l~~~l~~ 158 (1871)
+.++..|..+.++|+-..+. -|+...+...++- . ...|+.-+.+-+..-+-| +...++..|...+..
T Consensus 84 e~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 84 ETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred HHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 44555555666666444444 3555555555553 1 135667777777777777 899999999999999
Q ss_pred hCCCccC-hhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhH---HHhhhch-HHHHHHHHHHHHhc------
Q 000200 159 FGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKT---ILFEKMR-DTMKKELEVELVNV------ 227 (1871)
Q Consensus 159 FG~~vv~-~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~lk~---~L~~~Lk-p~q~keLe~efek~------ 227 (1871)
||.=..+ =+.|++.+..-++..-..||.-|...++-+-.+.+.++... .|.++|- +.|..++...+.-+
T Consensus 164 ~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ 243 (1233)
T KOG1824|consen 164 FGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQ 243 (1233)
T ss_pred hcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH
Confidence 9984444 34588888888999999999999999998888887543222 2223332 23444443333221
Q ss_pred CCC--------CCCcc--hhhhHH-hHhhhh-------hh----cccCCC---------------CCCCCCCCCCCCCCC
Q 000200 228 SGT--------ARPTR--KIRAEQ-DKELGQ-------EL----ISEDVG---------------PGPSEESTADVPPEI 270 (1871)
Q Consensus 228 ~~~--------~~P~R--~~Rs~q-~~~~~~-------~~----~~~~~~---------------~~~~~~~~~~~~~~i 270 (1871)
.|. ..|-- |.-+.+ +..+-. +. .+.+.. =++.=..+ .++|-
T Consensus 244 ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd--~~eDe 321 (1233)
T KOG1824|consen 244 AGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYD--TEEDE 321 (1233)
T ss_pred hcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCC--Cccch
Confidence 111 01100 110000 000000 00 000000 00000000 00111
Q ss_pred CccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhh-cCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHH
Q 000200 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAI 349 (1871)
Q Consensus 271 Dp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i 349 (1871)
|...+-|..| .+ .++-|+.=++-.||.|++|..-+..+++ ..-.-+.=|-.+...|-.+++|--=+|.+..+...
T Consensus 322 d~~~~ed~eD-de---~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~y 397 (1233)
T KOG1824|consen 322 DAMFLEDEED-DE---QDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAY 397 (1233)
T ss_pred hhhhhhcccc-ch---hccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHH
Confidence 1111111111 00 0244666778889999999999988654 33333444778888888888877777777666665
Q ss_pred HHHHHHhcc----------------ccc-----cchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHh--cC--CChhhh
Q 000200 350 GNLARGLRT----------------HFS-----GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GC--LNLVDV 404 (1871)
Q Consensus 350 ~~lA~gLr~----------------~F~-----~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~--~~--~~l~~~ 404 (1871)
-.+-+--|. +|. .....++..|=..++||+.--+.....-|.++... ++ -+++.+
T Consensus 398 i~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~sl 477 (1233)
T KOG1824|consen 398 IALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSL 477 (1233)
T ss_pred HHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhccccc
Confidence 555443331 122 22344566666678888876555555555555543 11 235567
Q ss_pred HHHHHHHhhcCC--chhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhh----------------------------
Q 000200 405 VEDVKTSVKNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL---------------------------- 454 (1871)
Q Consensus 405 ~e~i~~al~~Kn--P~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l---------------------------- 454 (1871)
+..|.-.+.+|+ .+.|.+.+.|+.-.+..+++..+...++.+.|+++.++
T Consensus 478 vpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~ 557 (1233)
T KOG1824|consen 478 VPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPP 557 (1233)
T ss_pred chhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCC
Confidence 778888888888 68999999999999987765554333333333322222
Q ss_pred ----------------------CCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCC
Q 000200 455 ----------------------NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTS 512 (1871)
Q Consensus 455 ----------------------~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~ 512 (1871)
+|+|.+||++|..|+|-++-.+|. .+...+...=++-.+++.+-+-..
T Consensus 558 ~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD-~l~~eL~~~L~il~eRl~nEiTRl--------- 627 (1233)
T KOG1824|consen 558 SSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGD-FLGNELPRTLPILLERLGNEITRL--------- 627 (1233)
T ss_pred ccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHhchhHHH---------
Confidence 677888888888888888888772 233222222122222222111000
Q ss_pred CccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCH-
Q 000200 513 SARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL- 591 (1871)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~- 591 (1871)
++++.. ..+. ..+. ...+++
T Consensus 628 -------------------~AvkAl--t~Ia-----------------------------------~S~l---~i~l~~~ 648 (1233)
T KOG1824|consen 628 -------------------TAVKAL--TLIA-----------------------------------MSPL---DIDLSPV 648 (1233)
T ss_pred -------------------HHHHHH--HHHH-----------------------------------hccc---eeehhhh
Confidence 000000 0000 0000 000110
Q ss_pred -HHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCC-CccchHHHHHHHHHHHHH
Q 000200 592 -EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPG-WSEKNVQVQQQVIEVINY 669 (1871)
Q Consensus 592 -ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~Pg-wkesNfqV~~~~leil~~ 669 (1871)
.++- +++..-+...+-+-|++-+..+.+.++...... ..+.+=-.|..-|+ ..||-.+|-+..+.+++.
T Consensus 649 l~~il--------~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~-~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~t 719 (1233)
T KOG1824|consen 649 LTEIL--------PELASFLRKNQRALRLATLTALDKLVKNYSDSI-PAELLEAVLVELPPLISESDLHVTQLAVAFLTT 719 (1233)
T ss_pred HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 1111 233344444445556665555555554432211 22333334445566 488888988888888888
Q ss_pred HHHhcCCCCccchhhhccch-------------------------------------hhccccchhh-------------
Q 000200 670 LAATATKFPKKCVVLCLLGI-------------------------------------SERVADIKTR------------- 699 (1871)
Q Consensus 670 la~~~~~fs~~~~~~~l~~l-------------------------------------veKlgD~K~r------------- 699 (1871)
++...+..--..-..+++.+ ++.+..++-.
T Consensus 720 l~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~s 799 (1233)
T KOG1824|consen 720 LAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYS 799 (1233)
T ss_pred HHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHH
Confidence 77653321000001111111 1111111100
Q ss_pred -hHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHH
Q 000200 700 -AHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778 (1871)
Q Consensus 700 -~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~a 778 (1871)
+.....|+..|...+...+..-+...+..+-|-.++.=|+.-+++.=..++. ..-..+-+.+.++ |+|+|..|+.|
T Consensus 800 iA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~--s~~~e~~~~iiea-f~sp~edvksA 876 (1233)
T KOG1824|consen 800 IAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL--SPQNELKDTIIEA-FNSPSEDVKSA 876 (1233)
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC--CcchhhHHHHHHH-cCCChHHHHHH
Confidence 1111122222222222222222222222222333333333333333222222 2223444455666 99999999999
Q ss_pred HHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcccc------c---cccccCCCCCCCCCCCCccc
Q 000200 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV------R---ASESTSSVSSGGSDGLPRED 849 (1871)
Q Consensus 779 Ai~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~------r---~~~~~~~~~~~~~d~lprvD 849 (1871)
|--.||.+-- |. +-.|| |-++.+|+.+ |.|+- + ..++. +-..|-+|
T Consensus 877 As~ALGsl~v--gn-l~~yL----pfil~qi~sq-----------pk~QyLLLhSlkevi~~~sv-------d~~~~~v~ 931 (1233)
T KOG1824|consen 877 ASYALGSLAV--GN-LPKYL----PFILEQIESQ-----------PKRQYLLLHSLKEVIVSASV-------DGLKPYVE 931 (1233)
T ss_pred HHHHhhhhhc--Cc-hHhHH----HHHHHHHhcc-----------hHhHHHHHHHHHHHHHHhcc-------chhhhhHH
Confidence 9999998753 32 22333 4455555543 22210 0 00000 00111111
Q ss_pred cccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc--cchhHhHHHHHHHHHHHHHHhcC
Q 000200 850 ISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDSNKNLVMATLITLGAVASAMG 927 (1871)
Q Consensus 850 Is~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl--~DsNk~lv~~al~ii~~lA~amG 927 (1871)
+|=.-|.+.++...==+|.=--|=+.+++ .|.| ..|...|+.++ .++|-.....+ .+--.-+-=-
T Consensus 932 ---~IW~lL~k~cE~~eegtR~vvAECLGkL~-----l~ep---esLlpkL~~~~~S~a~~~rs~vvs--avKfsisd~p 998 (1233)
T KOG1824|consen 932 ---KIWALLFKHCECAEEGTRNVVAECLGKLV-----LIEP---ESLLPKLKLLLRSEASNTRSSVVS--AVKFSISDQP 998 (1233)
T ss_pred ---HHHHHHHHhcccchhhhHHHHHHHhhhHH-----hCCh---HHHHHHHHHHhcCCCcchhhhhhh--eeeeeecCCC
Confidence 12222344454443333444334444443 2233 56899999988 56665443322 1111111112
Q ss_pred hhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc--chhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCC
Q 000200 928 PAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1005 (1871)
Q Consensus 928 ~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~ 1005 (1871)
++...+.+..+..++..|.|--..||..|+.+++.++--=. ...++|++...|-+.. ..|+|+..=.. +.
T Consensus 999 ~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eT---kvrkelIreVe-----MG 1070 (1233)
T KOG1824|consen 999 QPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSET---KVRKELIREVE-----MG 1070 (1233)
T ss_pred CccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhh---hhhHhhhhhhc-----cc
Confidence 46778899999999999999999999999999998764322 3566666666665432 25666654332 11
Q ss_pred CCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 1006 GFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 1006 ~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
| +.+--|-.-|+||+|.+++-+++-
T Consensus 1071 ----------P-FKH~VDdgLd~RKaaFEcmytLLd 1095 (1233)
T KOG1824|consen 1071 ----------P-FKHTVDDGLDLRKAAFECMYTLLD 1095 (1233)
T ss_pred ----------C-ccccccchHHHHHHHHHHHHHHHH
Confidence 1 234457788999999999987764
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-08 Score=120.04 Aligned_cols=372 Identities=17% Similarity=0.193 Sum_probs=245.9
Q ss_pred hhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCc--cChhH----HHhhchhhhcccCh-hHHHHHHHHHHHHHHhh
Q 000200 127 DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI--IPPKR----ILKMLPELFDHQDQ-NVRASSKGLTLELCRWI 199 (1871)
Q Consensus 127 ~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~~v--v~~K~----ilk~l~~lf~~~dk-~VR~ea~~L~vely~wl 199 (1871)
+.+.+.+-.-...-.||-+..-...+.....+|-... ...++ +-|+.|-.|.-..- .+-...-..+.+++--.
T Consensus 101 ~~~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~~~g~s~~t~~~~~s~rkm~~~~~d~~~~~l~~~~v~s~l~~~~~~n 180 (516)
T KOG2956|consen 101 LKVCELMCDPIHLMSPKSRVVLLEYLTRLLEEYPERGTSPNTKETKAAIRKMFPWMFDPRIENLLTPHVESSLCSLFALN 180 (516)
T ss_pred HHHHHHHhCHHHhcCCccccchhhhhhcccccccccCCCCCCCcchhhhhhccccccCchhhccccHHHHHHHHHHHHHH
Confidence 3455555555556679999999999999988876533 22333 55666655554332 23334444555555555
Q ss_pred CCchhhHHHhhhchHHHHHHHHHHHHhcC--CCCCCcchhhhHHhHh----------hhhhhcccCCCCCCCCCCC----
Q 000200 200 GKDPVKTILFEKMRDTMKKELEVELVNVS--GTARPTRKIRAEQDKE----------LGQELISEDVGPGPSEEST---- 263 (1871)
Q Consensus 200 G~~~lk~~L~~~Lkp~q~keLe~efek~~--~~~~P~R~~Rs~q~~~----------~~~~~~~~~~~~~~~~~~~---- 263 (1871)
-.+ + +.+++.+.|.+..---+-.+... ++.++.+-.+...... ...+........-...+..
T Consensus 181 ~a~-f-ss~~d~l~p~~rD~~~~~~~~n~~~~~~~~~~a~~e~~~~~~n~~~~~~~~P~~~~~~~~~~~~~~~~~~~~n~ 258 (516)
T KOG2956|consen 181 NAD-F-SSLFDLLNPEKRDWAYDSLQSNGIDNGSPSPSAEKERFDSSNNKPSLPLSPPEEEKPGLGSTKVNPEELRLSNE 258 (516)
T ss_pred hhc-h-HhhhhccChhhhhhHHHHHHhhCcCCCCCCchhhhcccccccccccccCCChhhcccCCCccccCccccccccc
Confidence 554 5 45668888876432222233322 2223323111111000 0000000000000000000
Q ss_pred -----CCCCCC-CCccccCCccccc-CCCCchhhhhhhhc-cChHHHHHHHHHHHHhhhcCCC--CCCChHHHHHHHHHH
Q 000200 264 -----ADVPPE-IDEYELVDPVDIL-TPLEKSGFWEGVKA-TKWSERKDAVAELTKLASTKRI--APGDFTEVCRTLKKL 333 (1871)
Q Consensus 264 -----~~~~~~-iDp~dl~~~vdIl-~klpk~~f~~~l~s-~KWkeRkEaLe~l~~l~~~pKi--~~~dy~eL~~~Lkk~ 333 (1871)
..+..- -|+.|-..|..+. +.++ .+...++.. -+=.+|++||.+|.+++-..-+ ....|++|.-.+=.+
T Consensus 259 ~~~~~~l~e~~~~~~~~~~~p~~~~~~~~v-~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~Ev 337 (516)
T KOG2956|consen 259 TERLSRLEEYSTDDSMDQLTPNSVDQSALV-ADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEV 337 (516)
T ss_pred hhhhhhchhhccCcchhhCCCCCcchhHHH-HHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH
Confidence 000000 1223333343332 1333 245566644 4889999999999987644433 356699999999999
Q ss_pred hcc-ccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHh
Q 000200 334 ITD-VNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 412 (1871)
Q Consensus 334 l~D-sNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al 412 (1871)
++| .+-..-.+|+++|+.+++.-.+.|..|..+.+..+|+.-||.-..|...+.+++.....+ ..++ .++.-|...+
T Consensus 338 L~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las-~~P~-~~I~~i~~~I 415 (516)
T KOG2956|consen 338 LSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLAS-HLPL-QCIVNISPLI 415 (516)
T ss_pred HccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHh-hCch-hHHHHHhhHH
Confidence 998 899999999999999999999999999999999999999999887777666665555544 2344 4455566555
Q ss_pred hcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHH
Q 000200 413 KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 492 (1871)
Q Consensus 413 ~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~k 492 (1871)
.+---+.-.-+++.++|.++..+...+..++.+++|.+++..+-+...||++|.-||.++...+|++.|.|+|++|...|
T Consensus 416 lt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk 495 (516)
T KOG2956|consen 416 LTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSK 495 (516)
T ss_pred hcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHH
Confidence 55444555577889999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 000200 493 RNKLSEMIAGS 503 (1871)
Q Consensus 493 k~KI~e~~~~~ 503 (1871)
++-|+=|++.+
T Consensus 496 ~~LlqlYinRa 506 (516)
T KOG2956|consen 496 LNLLQLYINRA 506 (516)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-05 Score=98.62 Aligned_cols=350 Identities=20% Similarity=0.268 Sum_probs=217.8
Q ss_pred cCCCCH-HHHHHHHHHHHHHHHHcChhhhhh-hhHHHHHHHHhhhc----CChhhHHHHHHHHHHHHhhcc------hhh
Q 000200 61 VADSNA-PVQDKALDALIAYLKAADADAGRY-AKEVCDAIAAKCLT----GRPKTVEKAQAVFMLWVELEA------VDV 128 (1871)
Q Consensus 61 v~DsN~-~aqek~leal~~~l~~a~~~~~~~-~~~~~~~lveK~L~----~r~~tk~~a~e~~l~~vE~e~------~~~ 128 (1871)
+-|++. ..||-++.||....+-+....-+- ....+..++-|-|- .-|+.+..|+.|+-.||=+-. .+.
T Consensus 136 ~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~ 215 (885)
T KOG2023|consen 136 LLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDK 215 (885)
T ss_pred HhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHH
Confidence 445555 678888888887776542211110 11234444555442 469999999999988886533 245
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHHHHhhCC-CccC-hhHHHhhchhhhcccChhHHHHHHHHHHHHHHh-hCCchhh
Q 000200 129 FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA-KIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRW-IGKDPVK 205 (1871)
Q Consensus 129 v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~-~vv~-~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~w-lG~~~lk 205 (1871)
++|.+....+.-+|-|...-..++.-+ -+|-+ +.+| +..|++++-..-.+.|.+|-=||-.+-..+.-- +-+..++
T Consensus 216 Fle~lFalanD~~~eVRk~vC~alv~L-levr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~ 294 (885)
T KOG2023|consen 216 FLEILFALANDEDPEVRKNVCRALVFL-LEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQ 294 (885)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHH-HHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHH
Confidence 556555555556675554444444333 34555 6665 788999999999999999998888775544311 1223455
Q ss_pred HHHhhhchHHHHHHH-----HHHHHh-cCC---------CCCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCC
Q 000200 206 TILFEKMRDTMKKEL-----EVELVN-VSG---------TARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEI 270 (1871)
Q Consensus 206 ~~L~~~Lkp~q~keL-----e~efek-~~~---------~~~P~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (1871)
++| ++|=|+.+.-. +--.-+ .+. ..+| |+-++.+. +.+.+.+ ++.++-
T Consensus 295 p~l-~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkP-Rfhksk~~----------~~~~~~~-----~eDddd 357 (885)
T KOG2023|consen 295 PYL-DKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKP-RFHKSKEH----------GNGEDAD-----DEDDDD 357 (885)
T ss_pred HHH-HHHHHHHHccCccccccHHHhcCccccccCCchhhhccc-hhhhchhc----------cCccccc-----cccccc
Confidence 554 66666665321 111111 111 1233 55554432 1111111 111111
Q ss_pred CccccCCcccccCCCCchhhhhhhhccChHHHH---HHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHH
Q 000200 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERK---DAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQ 347 (1871)
Q Consensus 271 Dp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRk---EaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~ 347 (1871)
|.+| +.=.-..|--|| .+|+-|..+... .=.--++..||..+..-+=.|--.++=
T Consensus 358 De~D-----------------DdD~~~dWNLRkCSAAaLDVLanvf~~-----elL~~l~PlLk~~L~~~~W~vrEagvL 415 (885)
T KOG2023|consen 358 DEDD-----------------DDDAFSDWNLRKCSAAALDVLANVFGD-----ELLPILLPLLKEHLSSEEWKVREAGVL 415 (885)
T ss_pred cccc-----------------cccccccccHhhccHHHHHHHHHhhHH-----HHHHHHHHHHHHHcCcchhhhhhhhHH
Confidence 1111 111224688888 455554433211 113346778888888777788888889
Q ss_pred HHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHH
Q 000200 348 AIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427 (1871)
Q Consensus 348 ~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L 427 (1871)
.+|+||+|=.++|.+|..-++|-++..+-|||+-||. + +|.+|......+
T Consensus 416 AlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRs--------I---TCWTLsRys~wv------------------- 465 (885)
T KOG2023|consen 416 ALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRS--------I---TCWTLSRYSKWV------------------- 465 (885)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHhccCccceee--------e---eeeeHhhhhhhH-------------------
Confidence 9999999999999999999999999999999999984 2 377776543322
Q ss_pred HHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcC
Q 000200 428 TFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 488 (1871)
Q Consensus 428 ~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~L 488 (1871)
++.. + .++++.++..+.+.+=|++..|.+||+.+++++---.|++ +.+|++.+
T Consensus 466 ---~~~~-~---~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~I 518 (885)
T KOG2023|consen 466 ---VQDS-R---DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE-LVPYLEYI 518 (885)
T ss_pred ---hcCC-h---HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch-hHHHHHHH
Confidence 1211 1 2345777888999999999999999999999999999976 66787754
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.9e-05 Score=97.23 Aligned_cols=570 Identities=16% Similarity=0.190 Sum_probs=328.1
Q ss_pred hHHHhhhhccHHHHHHHHHHHHHHHHh-hhccchhHH-HHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccch
Q 000200 605 DTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQSVE-ILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV 682 (1871)
Q Consensus 605 ~i~~~L~s~~WK~RL~a~e~l~~~v~~-~~~~~~~~~-~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~ 682 (1871)
.+++.+.++|=--|.=|..+|...++. .-.++.+++ -+++.+.+ -..|+|-.|++.....+..+++ ++..-..
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLk--lL~D~ngEVQnlAVKClg~lvs---Kvke~~l 83 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLK--LLEDKNGEVQNLAVKCLGPLVS---KVKEDQL 83 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHH--HHhccCcHHHHHHHHHHHHHHh---hchHHHH
Confidence 456667777755566666666655544 111222221 13333332 1478999999999999998885 4444455
Q ss_pred hhhccchhhcc-ccch-hhhHHHH-HHHHHHHhhc------hHhHHHHHHHhhhhcCChh------hHHHHHHHHHHHHH
Q 000200 683 VLCLLGISERV-ADIK-TRAHAMK-CLTTFSEAVG------PGFIFERLYKIMKDHKNPK------VLSEGILWMVSAVE 747 (1871)
Q Consensus 683 ~~~l~~lveKl-gD~K-~r~~a~e-~L~~~aE~~~------~~~V~~~l~~~~~~~KnPK------v~~e~l~wl~~ai~ 747 (1871)
..++..+++++ .+.+ .|+.+.- +.+.+++.-+ ..-|+.++.+.+ .+-+-+ ++-|+|+-|+..+.
T Consensus 84 e~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l-~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 84 ETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKL-KQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred HHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHH-HHHhhhcccchhhHHHHHHHHHHHHH
Confidence 55566666663 3332 4555444 4444665431 234555555553 233333 89999999999999
Q ss_pred HhccCccch-HhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcc
Q 000200 748 DFGVSHLKL-KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKK 826 (1871)
Q Consensus 748 eFG~~~~~~-K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R 826 (1871)
.||--..|. ..+..++.-. |++.-.+||.-|+.+||-+-.+.+..+...+
T Consensus 163 r~g~ll~~fh~~il~~l~~q-l~s~R~aVrKkai~~l~~la~~~~~~ly~~l---------------------------- 213 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQ-LQSPRLAVRKKAITALGHLASSCNRDLYVEL---------------------------- 213 (1233)
T ss_pred hhcccCcchHHHHHHHHhhc-ccChHHHHHHHHHHHHHHHHHhcCHHHHHHH----------------------------
Confidence 999765555 5677777777 9999999999999999988776654444332
Q ss_pred ccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccc
Q 000200 827 TVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD 906 (1871)
Q Consensus 827 ~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~D 906 (1871)
...+ .+.|-.|
T Consensus 214 ----------------------------i~~L--------------------------------------l~~L~~~--- 224 (1233)
T KOG1824|consen 214 ----------------------------IEHL--------------------------------------LKGLSNR--- 224 (1233)
T ss_pred ----------------------------HHHH--------------------------------------HhccCCC---
Confidence 0011 1111111
Q ss_pred hhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHh---ccCchhHHHHHHHHHHHHHHhcc--chhhhHH----HH
Q 000200 907 SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL---GDNKKHMRECTLTVLDAWLAAVH--LDKMVPY----VT 977 (1871)
Q Consensus 907 sNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l---~D~K~~vR~aa~~alda~~~~~g--l~~~~~~----i~ 977 (1871)
++-.-+.+-.+|++.|+.+.|..|..|.-.++|-++... ...---+|+..++++.+++..|. +-++.|+ ..
T Consensus 225 ~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l 304 (1233)
T KOG1824|consen 225 TQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCL 304 (1233)
T ss_pred CchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHH
Confidence 222234456789999999999999999999999999888 77778999999999999999986 3333333 33
Q ss_pred HHHh-cccCCcch-HHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhcc
Q 000200 978 TALT-DAKLGAEG-RKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1871)
Q Consensus 978 ~~L~-~~~~~p~~-r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~L 1055 (1871)
+++. +||.|-.. --|--.++. ... +... .-.|+-=+|-+=-||.+|..|+..++. --.|.+-...+.+
T Consensus 305 ~yisYDPNy~yd~~eDed~~~~e----d~e---Dde~--~deYsDDeD~SWkVRRaAaKcl~a~Is-SR~E~L~~~~q~l 374 (1233)
T KOG1824|consen 305 SYISYDPNYNYDTEEDEDAMFLE----DEE---DDEQ--DDEYSDDEDMSWKVRRAAAKCLEAVIS-SRLEMLPDFYQTL 374 (1233)
T ss_pred HHhccCCCCCCCCccchhhhhhh----ccc---cchh--ccccccccchhHHHHHHHHHHHHHHHh-ccHHHHHHHHHHh
Confidence 3443 45443221 111111111 110 1111 224444567778899999999987665 3445555555556
Q ss_pred CchhHHHHHHHHHhccCCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhh
Q 000200 1056 QGPALALILERIKLNGASQ--------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127 (1871)
Q Consensus 1056 k~~~~~~i~~~l~ka~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1127 (1871)
-|+.....++.=|..+.-. -.+.+. ...-. ..|.-.+
T Consensus 375 ~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~-----------------------------~~~~~------d~d~~e~ 419 (1233)
T KOG1824|consen 375 GPALISRFKEREENVKADVFHAYIALLKQTRPV-----------------------------IEVLA------DNDAMEQ 419 (1233)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCC-----------------------------ccccc------Cchhhhc
Confidence 5554444333222211000 000000 00000 0000000
Q ss_pred hhhhcccCCCChHHHHhhhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhH
Q 000200 1128 SQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIE 1207 (1871)
Q Consensus 1128 ~~~~~~~~~~~K~~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~ 1207 (1871)
+++.. ..|. |+.|. +.+=+.+..+|=.+..|....++.+|.+.+...+..+..
T Consensus 420 ~g~~s---------------~~~~-----------L~~~~-~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~ 472 (1233)
T KOG1824|consen 420 GGTPS---------------DLSM-----------LSDQV-PLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQ 472 (1233)
T ss_pred cCCcc---------------chHH-----------HHhhh-HHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhh
Confidence 11100 0021 22221 223334455555677788999999999999888888888
Q ss_pred hHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhhcc
Q 000200 1208 VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFY 1287 (1871)
Q Consensus 1208 ~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vy 1287 (1871)
..|-++-=+..+|.|.|++..+|.. .|.-+...|...+-+--..--..+.|-++.-+|||=-
T Consensus 473 ~~~slvpgI~~~l~DkSsss~~ki~-~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fy----------------- 534 (1233)
T KOG1824|consen 473 HIPSLVPGIIYSLNDKSSSSNLKID-ALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFY----------------- 534 (1233)
T ss_pred cccccchhhhhhcCCccchHHHHHH-HHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchH-----------------
Confidence 8999999999999999999888743 3333344444444322222334445555555555422
Q ss_pred CccchHHHHHhhhccCChhhHhHHHHHHHHHHHhh-------cCcccCccchH--HHHHHH-hccCChhHHHHHHHHHHH
Q 000200 1288 SATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHH-------GAEISGQLKSL--QIVASL-TAERDGEIRKAALNTLAT 1357 (1871)
Q Consensus 1288 p~skvf~~l~~glksKN~r~R~Ecl~el~~li~~~-------G~~v~~~~Kal--~~ia~~-i~drD~~VR~AALn~l~~ 1357 (1871)
+.-+|.|-.+..+++-- |+++..-.+.+ -.+.++ ..|.|..||.+||.|+++
T Consensus 535 ------------------KisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq 596 (1233)
T KOG1824|consen 535 ------------------KISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQ 596 (1233)
T ss_pred ------------------hhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 22333334444443321 11111111111 122222 248999999999999999
Q ss_pred HHHHhchhHHHHhccCCHHHHhhHHHHHHHhHH
Q 000200 1358 GYKILGEDIWRYVGKLTDAQKSMLDDRFKWKVR 1390 (1871)
Q Consensus 1358 ~y~~~Gd~v~k~~g~ls~k~~s~Leer~kr~~~ 1390 (1871)
.-...||. +|+.-+.-+-.+-||+++-..
T Consensus 597 ~i~~fgD~----l~~eL~~~L~il~eRl~nEiT 625 (1233)
T KOG1824|consen 597 IIANFGDF----LGNELPRTLPILLERLGNEIT 625 (1233)
T ss_pred HHHHHhhh----hhhhhHHHHHHHHHHHhchhH
Confidence 99999964 566666666667777775433
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.0012 Score=94.21 Aligned_cols=600 Identities=13% Similarity=0.108 Sum_probs=349.7
Q ss_pred hhhhhhccChHHHHHHHHHHHHhhh-cCCCCC--CChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccccccc--
Q 000200 290 FWEGVKATKWSERKDAVAELTKLAS-TKRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-- 363 (1871)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~--~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y-- 363 (1871)
+.+-+.+.+=..+.+|...|..++. .+.... -+.| .+..|-+++. +.+..+.-.|+.+++.||.+ ...+..+
T Consensus 194 LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaG-aVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~-s~e~r~~Iv 271 (2102)
T PLN03200 194 LVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAG-AVKQLLKLLGQGNEVSVRAEAAGALEALSSQ-SKEAKQAIA 271 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHHccCCChHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 5555555555667777777765542 232111 1222 3677777886 67789999999999999985 2223333
Q ss_pred hhhhHHHHHHHhcc---------CCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcC-CchhHHHHHHHHHHHHhh
Q 000200 364 SRFLLPVLLEKLKE---------KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIET 433 (1871)
Q Consensus 364 ~~~~~~~lLeklKE---------KK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~K-nP~vk~etl~~L~r~l~~ 433 (1871)
....+|++++-+.. .+..+++.+.-||-.++. ....++..+...+.+. .+.+-..++.=|...+..
T Consensus 272 ~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg----g~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l 347 (2102)
T PLN03200 272 DAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG----GMSALILYLGELSESPRSPAPIADTLGALAYALMV 347 (2102)
T ss_pred HCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC----CchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence 23458888877752 345567777777777654 3344555555555432 223222333333333222
Q ss_pred CC-hhHHHHhh--hhhHHHHHhhhCCCCHHH-HHHHHHHHHHHH------HHh---C-hhHHHHHhhcCCHHHHHHHHHH
Q 000200 434 SS-KAAVLKVH--KDYVPICMECLNDGTPEV-RDAAFSVLAAIA------KSV---G-MRPLERSIEKLDDVRRNKLSEM 499 (1871)
Q Consensus 434 ~~-~~~~~~~~--k~~~~~l~k~l~Ds~~~V-R~aA~~~l~~lm------k~~---G-e~~l~~~l~~Ld~~kk~KI~e~ 499 (1871)
.. .......+ ..+++.+++++..+++.+ .+.+.++|..++ +.+ | .+.+..++.--+...+...-..
T Consensus 348 ~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~a 427 (2102)
T PLN03200 348 FDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRA 427 (2102)
T ss_pred cCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHH
Confidence 11 11111111 246789999998887774 777777764422 111 1 2222222222221111111111
Q ss_pred HhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCC
Q 000200 500 IAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTE 579 (1871)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~ 579 (1871)
+..- .
T Consensus 428 L~~L--------------------------------------------------------------------------~- 432 (2102)
T PLN03200 428 LSSL--------------------------------------------------------------------------C- 432 (2102)
T ss_pred HHHH--------------------------------------------------------------------------h-
Confidence 1000 0
Q ss_pred CCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhcCCCc
Q 000200 580 APEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWS 653 (1871)
Q Consensus 580 ~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~------~~~~~~lvr~l~~~Pgwk 653 (1871)
.-+.|-.+.....-.-+-++..|.+.+=..|..|+..+.....+.++. ......|+++|.
T Consensus 433 --------~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~------ 498 (2102)
T PLN03200 433 --------CGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLE------ 498 (2102)
T ss_pred --------CCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc------
Confidence 001112222222223355677777777777777776665433222110 123456677664
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCCccch--hhhccchhhcc--ccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhc
Q 000200 654 EKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERV--ADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDH 729 (1871)
Q Consensus 654 esNfqV~~~~leil~~la~~~~~fs~~~~--~~~l~~lveKl--gD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~ 729 (1871)
..++.++....-+|..++.. ..--+..+ .-+++.+++-+ ||.+.+..+..+|..++.... ..++.++... ..+
T Consensus 499 s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d-~~~I~~Lv~L-Lls 575 (2102)
T PLN03200 499 TGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD-AATISQLTAL-LLG 575 (2102)
T ss_pred CCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc-hhHHHHHHHH-hcC
Confidence 33667778777777766532 11111222 12455555544 456788888888888876433 3455666654 588
Q ss_pred CChhhHHHHHHHHHHHHHHhcc-----CccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHH
Q 000200 730 KNPKVLSEGILWMVSAVEDFGV-----SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPA 804 (1871)
Q Consensus 730 KnPKv~~e~l~wl~~ai~eFG~-----~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpa 804 (1871)
.+|+++.-++.-+..++.--.. .++..-.-|+.+.+. |.+.|+.++..|..+|..+...- ++....+
T Consensus 576 dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L-L~sgs~~ikk~Aa~iLsnL~a~~-~d~~~av------ 647 (2102)
T PLN03200 576 DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL-LSSSKEETQEKAASVLADIFSSR-QDLCESL------ 647 (2102)
T ss_pred CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCC-hHHHHHH------
Confidence 9999999999888776551111 111112456677777 99999999999998887666311 0000000
Q ss_pred HHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHc
Q 000200 805 LLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA 884 (1871)
Q Consensus 805 ll~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~a 884 (1871)
+++ +-|+ -++.-+.+.+-++|+|+--+|..+....
T Consensus 648 ----v~a----------------------------------------gaIp-PLV~LLss~~~~v~keAA~AL~nL~~~~ 682 (2102)
T PLN03200 648 ----ATD----------------------------------------EIIN-PCIKLLTNNTEAVATQSARALAALSRSI 682 (2102)
T ss_pred ----HHc----------------------------------------CCHH-HHHHHHhcCChHHHHHHHHHHHHHHhCC
Confidence 000 0023 3777788889999999999999998522
Q ss_pred c--cCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHH
Q 000200 885 N--KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 962 (1871)
Q Consensus 885 n--krI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda 962 (1871)
+ ++..- .-...++.|..-|++.+..++..|+..++.|+..-.-.-+-..-..+++++..|.+....+|+.|..+|-.
T Consensus 683 ~~~q~~~~-v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~ 761 (2102)
T PLN03200 683 KENRKVSY-AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQ 761 (2102)
T ss_pred CHHHHHHH-HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 1 11110 11335777999999999999999999999998765322211223458999999999999999999999999
Q ss_pred HHHhccchhhh-H---------HHHHHHhcccC-Ccch--HHHHHHHHHHHhccCCC-Cc------chhhhhhHHhhhcC
Q 000200 963 WLAAVHLDKMV-P---------YVTTALTDAKL-GAEG--RKDLFDWLSKQLTGLSG-FP------DAAHLLKPASIAMT 1022 (1871)
Q Consensus 963 ~~~~~gl~~~~-~---------~i~~~L~~~~~-~p~~--r~e~l~wL~~~l~~~~~-~~------~~~~~~~p~~~~L~ 1022 (1871)
.+.+...+..+ . .+.+.|...+. +... =-+.+.||++.=.+... .+ +.-.-+.|++.||.
T Consensus 762 L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~ 841 (2102)
T PLN03200 762 LLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLA 841 (2102)
T ss_pred HHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHH
Confidence 98888876644 2 34555653221 2221 34788898874222221 12 22345788999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 000200 1023 DKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 1023 Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
+-+++|-+.|-++|..+.+
T Consensus 842 ~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 842 EGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred cCChHHHHHHHHHHHHHhc
Confidence 9999999999999987754
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.0096 Score=85.62 Aligned_cols=812 Identities=17% Similarity=0.163 Sum_probs=444.0
Q ss_pred CcccccCCCCchhhhhhhhcc--ChHHHHHHHHHHHHhhhcC---CCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 000200 277 DPVDILTPLEKSGFWEGVKAT--KWSERKDAVAELTKLASTK---RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGN 351 (1871)
Q Consensus 277 ~~vdIl~klpk~~f~~~l~s~--KWkeRkEaLe~l~~l~~~p---Ki~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~ 351 (1871)
||....... ..+.++|.+. +=++|+.++-+|..+.+.. |..=++.++.+..|-..|.-.+..+...|+.++..
T Consensus 7 ~~~~~~~~v--~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~n 84 (2102)
T PLN03200 7 DPDGTLASV--AQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGV 84 (2102)
T ss_pred CccchHHHH--HHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344444444 3688899866 7799999999999987532 32212334456667777764456666677778887
Q ss_pred HHHH--hccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc-CC----C---hhhhHHHHHHHhhcCCc---h
Q 000200 352 LARG--LRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CL----N---LVDVVEDVKTSVKNKVP---L 418 (1871)
Q Consensus 352 lA~g--Lr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~-~~----~---l~~~~e~i~~al~~KnP---~ 418 (1871)
|+.- .+...- ....+|++++-|++-....++++..+|-.+...+ |- . -...++.+...+++.+. .
T Consensus 85 LS~~e~nk~~Iv--~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~ 162 (2102)
T PLN03200 85 LCKEEDLRVKVL--LGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKV 162 (2102)
T ss_pred HhcCHHHHHHHH--HcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHH
Confidence 7743 222222 2689999999999999999999999999887531 00 0 12345666677776542 1
Q ss_pred hHHHHHHHHHHHHhhCChhHHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHH
Q 000200 419 VRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLS 497 (1871)
Q Consensus 419 vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~ 497 (1871)
++..+..-|...- .+.......++ ...+|.++..|.+.++.++..|+.+|..++...++ . +.+|.
T Consensus 163 L~~~Av~AL~nLs-~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee-~------------~~aVI 228 (2102)
T PLN03200 163 VEGLLTGALRNLC-GSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFES-S------------ISKVL 228 (2102)
T ss_pred HHHHHHHHHHHHh-cCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH-H------------HHHHH
Confidence 2222222332222 22211111112 24899999999999999999998888777554432 1 11111
Q ss_pred HHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccC
Q 000200 498 EMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKL 577 (1871)
Q Consensus 498 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~ 577 (1871)
+. |+ .
T Consensus 229 ---ea-Ga----------V------------------------------------------------------------- 233 (2102)
T PLN03200 229 ---DA-GA----------V------------------------------------------------------------- 233 (2102)
T ss_pred ---HC-CC----------H-------------------------------------------------------------
Confidence 11 00 0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhh-ccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccch
Q 000200 578 TEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKN 656 (1871)
Q Consensus 578 ~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s-~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesN 656 (1871)
+-++..|.+ .+-..|-+|.-.|...... .....+.++. .
T Consensus 234 --------------------------P~LV~LL~sg~~~~VRE~AA~AL~nLAs~---s~e~r~~Iv~----a------- 273 (2102)
T PLN03200 234 --------------------------KQLLKLLGQGNEVSVRAEAAGALEALSSQ---SKEAKQAIAD----A------- 273 (2102)
T ss_pred --------------------------HHHHHHHccCCChHHHHHHHHHHHHHhcC---CHHHHHHHHH----C-------
Confidence 001111110 1111222222222211110 0011111111 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHH
Q 000200 657 VQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLS 736 (1871)
Q Consensus 657 fqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~ 736 (1871)
.++..+-.+... + ++ .|+.+ . ...-+++.+.-+|-.+|--. ..++..+-..+-..+.+.+++
T Consensus 274 -----GgIp~LI~lL~s-p--~~----e~~~~---~-~~~~Lqe~AvwALsNIcgg~--~~ll~~L~~ll~s~rd~~~~a 335 (2102)
T PLN03200 274 -----GGIPALINATVA-P--SK----EFMQG---E-FAQALQENAMGALANICGGM--SALILYLGELSESPRSPAPIA 335 (2102)
T ss_pred -----CCHHHHHHHHhC-c--ch----hhhcc---c-cchHHHHHHHHHHHHHhCCc--hhhHHHHHHhhcccchHHHHH
Confidence 112222211110 0 00 00000 0 01123445555555555322 233444444333345666777
Q ss_pred HHHHHHHHHHHHhccCc-----cchHhHHHHHhhhcCCCccHH-HHHHHHHHHHHHHhhhCch-hHhhh--hcchHHHHH
Q 000200 737 EGILWMVSAVEDFGVSH-----LKLKDLIDFCKDTGLQSSAAA-TRNATIKLLGALHKFVGPD-IKGFL--ADVKPALLS 807 (1871)
Q Consensus 737 e~l~wl~~ai~eFG~~~-----~~~K~li~~~k~~~l~~sN~~-VR~aAi~Ll~~ly~~~G~~-l~~~l--~dlkpall~ 807 (1871)
+++.-+..++..|.... ++...++..+-++ +.+.||. |...++..|..+| |.. ++..| .|.++.
T Consensus 336 da~gALayll~l~d~~~~~~~~i~~~~v~~~LV~L-lr~k~p~~vqe~V~eALasl~---gN~~l~~~L~~~daik~--- 408 (2102)
T PLN03200 336 DTLGALAYALMVFDSSAESTRAFDPTVIEQILVKL-LKPRDTKLVQERIIEALASLY---GNAYLSRKLNHAEAKKV--- 408 (2102)
T ss_pred HHHhhHHHHHHhcCCchhhhhhccccccHHHHHHH-hCCCCCchhHHHHHHHHHHhc---CChHHHHHHHhccchhh---
Confidence 88888888877665432 2222333444555 6777666 4666666665554 322 22222 111222
Q ss_pred HHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccC
Q 000200 808 ALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887 (1871)
Q Consensus 808 ~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankr 887 (1871)
++.-+...+=..|.++...|..++...+..
T Consensus 409 --------------------------------------------------LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~ 438 (2102)
T PLN03200 409 --------------------------------------------------LVGLITMATADVQEELIRALSSLCCGKGGL 438 (2102)
T ss_pred --------------------------------------------------hhhhhccCCHHHHHHHHHHHHHHhCCCHHH
Confidence 333333333456666777766666321111
Q ss_pred CCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh---hhhhhHHHHHHhccCchhHHHHHHHHHHHHH
Q 000200 888 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS---SKGVLSDILKCLGDNKKHMRECTLTVLDAWL 964 (1871)
Q Consensus 888 I~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~---~k~l~~~il~~l~D~K~~vR~aa~~alda~~ 964 (1871)
++--.--.-++.|-.-|...+..++..|+..++.|+.+ ....+. --+.+|+++..|...+..+++.|..+|.-..
T Consensus 439 ~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~--ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa 516 (2102)
T PLN03200 439 WEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDE--VDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLC 516 (2102)
T ss_pred HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 11110012367777778778899999999999999763 332221 2468999999999999999999888887654
Q ss_pred Hh-------ccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHH
Q 000200 965 AA-------VHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (1871)
Q Consensus 965 ~~-------~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1871)
.. +.-...++.+.+.|.++ ++..|.+++.=|. .|....+ ...+++++.-|...++.+...+-.+|+
T Consensus 517 ~~~~qir~iV~~aGAIppLV~LL~sg--d~~~q~~Aa~AL~-nLi~~~d----~~~I~~Lv~LLlsdd~~~~~~aL~vLg 589 (2102)
T PLN03200 517 CHSEDIRACVESAGAVPALLWLLKNG--GPKGQEIAAKTLT-KLVRTAD----AATISQLTALLLGDLPESKVHVLDVLG 589 (2102)
T ss_pred CCcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHH-HHHhccc----hhHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 31 11123455677777754 4566655443333 3432222 123466666677777788888888888
Q ss_pred HHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCc
Q 000200 1038 EILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPES 1117 (1871)
Q Consensus 1038 ~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1117 (1871)
.++.....+.+..... ....-.+.+.+.++.
T Consensus 590 nIlsl~~~~d~~~~g~-~~~ggL~~Lv~LL~s------------------------------------------------ 620 (2102)
T PLN03200 590 HVLSVASLEDLVREGS-AANDALRTLIQLLSS------------------------------------------------ 620 (2102)
T ss_pred HHHhhcchhHHHHHhh-hccccHHHHHHHHcC------------------------------------------------
Confidence 7777655544332210 001112222222221
Q ss_pred cccchhhhhhhhhhcccCCCChHHHHhhhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHh
Q 000200 1118 IMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKA 1197 (1871)
Q Consensus 1118 ~~~~~~~~~~~~~~~~~~~~~K~~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~ 1197 (1871)
.++..+..--..=+++..-|.++++++ ...-.=+-++..|.+.+|.-.-++.-.|...
T Consensus 621 -------------------gs~~ikk~Aa~iLsnL~a~~~d~~~av---v~agaIpPLV~LLss~~~~v~keAA~AL~nL 678 (2102)
T PLN03200 621 -------------------SKEETQEKAASVLADIFSSRQDLCESL---ATDEIINPCIKLLTNNTEAVATQSARALAAL 678 (2102)
T ss_pred -------------------CCHHHHHHHHHHHHHHhcCChHHHHHH---HHcCCHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 001100000000023344555665554 3334455677788888887655555444433
Q ss_pred cCCCh----hhhhH--hHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHH
Q 000200 1198 LPSIR----KDIIE--VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEK 1271 (1871)
Q Consensus 1198 l~~~~----~~~i~--~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~ 1271 (1871)
..... ..++. .+-.+.+++ .+.+..+...+++.|..++..=... .+.=..-++|.|+.=+.+..+.
T Consensus 679 ~~~~~~~q~~~~v~~GaV~pL~~LL----~~~d~~v~e~Al~ALanLl~~~e~~----~ei~~~~~I~~Lv~lLr~G~~~ 750 (2102)
T PLN03200 679 SRSIKENRKVSYAAEDAIKPLIKLA----KSSSIEVAEQAVCALANLLSDPEVA----AEALAEDIILPLTRVLREGTLE 750 (2102)
T ss_pred HhCCCHHHHHHHHHcCCHHHHHHHH----hCCChHHHHHHHHHHHHHHcCchHH----HHHHhcCcHHHHHHHHHhCChH
Confidence 32222 12232 244455554 5678888888888888665432211 1122234589999888888888
Q ss_pred HHHHHHHHHHHHhhccCccchH-HH---------HHhhhccCChhh--HhHHHHHHHHHHH-hhcCcccCc--------c
Q 000200 1272 VREKMRELTKQIVNFYSATKTL-PY---------ILEGLRSKNNRT--RIECVDLVGFLID-HHGAEISGQ--------L 1330 (1871)
Q Consensus 1272 vR~~vr~i~~~~~~vyp~skvf-~~---------l~~glksKN~r~--R~Ecl~el~~li~-~~G~~v~~~--------~ 1330 (1871)
+|+..-..+-++|.-+|...++ .| |++-|++=|.+. -.|-||.|+.+.. ++|.+...| +
T Consensus 751 ~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p 830 (2102)
T PLN03200 751 GKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVP 830 (2102)
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhcc
Confidence 9999999999999999988866 22 345567777655 4478999998877 455443122 2
Q ss_pred chHHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHHhccC---CHHHHhhHHHHHHHh
Q 000200 1331 KSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKL---TDAQKSMLDDRFKWK 1388 (1871)
Q Consensus 1331 Kal~~ia~~i~drD~~VR~AALn~l~~~y~~~Gd~v~k~~g~l---s~k~~s~Leer~kr~ 1388 (1871)
-.|.-+-.++++-.|.|-..|+..|. .+++|+-. .+|++ .++-.+-|-.|+=.+
T Consensus 831 ~~l~~l~~~l~~~~p~~~~kai~il~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 887 (2102)
T PLN03200 831 SSLEPLVRCLAEGHPLVQDKAIEILS---RLCRDQPV-VLGDLIANASKCISSLADRIINS 887 (2102)
T ss_pred CchHHHHHHHHcCChHHHHHHHHHHH---HHhccChh-HHHHHHhcccchHHHHHHHHhhc
Confidence 34677778889999999999999998 55666522 23332 456677778887655
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.62 E-value=7e-07 Score=111.96 Aligned_cols=305 Identities=18% Similarity=0.179 Sum_probs=213.3
Q ss_pred hccCchhHHHHHHHHHHHHHhhCCCcc-ChhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHH
Q 000200 138 KNKVAKAVVPAIDVMFQALSEFGAKII-PPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTM 216 (1871)
Q Consensus 138 ~~K~PKvvaaai~~l~~~l~~FG~~vv-~~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~lk~~L~~~Lkp~q 216 (1871)
.+..|.|-..-+.+...++.+-|-+.+ +++++.+.- +=...+-++|+....+.+.+-+++-.. +.++.
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~--l~~~~~~~~~~~~~v~~~~~a~~~~~~--------d~~~~- 95 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQR--LNSLHNDNLRNNVVVLEGTLAFHLQIV--------DPRPI- 95 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHH--hccchhHHHhhhhHHHHHHHHHhcccc--------Ccchh-
Confidence 566677777777788888888887543 444432211 001128899999888888877766421 12221
Q ss_pred HHHHHHHHHhcCCCCCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhhc
Q 000200 217 KKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKA 296 (1871)
Q Consensus 217 ~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l~s 296 (1871)
+-+|..|+... +|+...+..-..- -.+ ..... . -.+...++ +...+.+++
T Consensus 96 -~~~~~~~~~~~---tps~~~q~~~~~~-l~~-~~~~~--------~-----------~~~~~~~l-----~~l~~ll~~ 145 (569)
T KOG1242|consen 96 -SIIEILLEELD---TPSKSVQRAVSTC-LPP-LVVLS--------K-----------GLSGEYVL-----ELLLELLTS 145 (569)
T ss_pred -HHHHHHHHhcC---CCcHHHHHHHHHH-hhh-HHHHh--------h-----------ccCHHHHH-----HHHHHHhcc
Confidence 33444454432 2322221110000 000 00000 0 00111222 345667889
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHH-HHHHHHHHHHHhccccccchhhhHHHHHHHh
Q 000200 297 TKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVE-AIQAIGNLARGLRTHFSGSSRFLLPVLLEKL 375 (1871)
Q Consensus 297 ~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~-A~~~i~~lA~gLr~~F~~y~~~~~~~lLekl 375 (1871)
.+-.+|+.+-.++..+....-+..--=..++..|-+-+.|-|-..... ++-+.......||+.|+||...++|.+|.+|
T Consensus 146 ~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~ 225 (569)
T KOG1242|consen 146 TKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNF 225 (569)
T ss_pred ccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHh
Confidence 999999999999888877666655333567888999999999888885 8888999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHhcCCChh---hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHh
Q 000200 376 KEKKPTVAESLTQTLQAMHKAGCLNLV---DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME 452 (1871)
Q Consensus 376 KEKK~~V~eAl~~aLda~~~~~~~~l~---~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k 452 (1871)
+|+=+.||+|+..|..++.. |++.. .++..++..+.....+-|+.++..|. ++..+-+..+..++..++|.+..
T Consensus 226 ~d~~~~Vr~Aa~~a~kai~~--~~~~~aVK~llpsll~~l~~~kWrtK~aslellg-~m~~~ap~qLs~~lp~iiP~lse 302 (569)
T KOG1242|consen 226 GDKINKVREAAVEAAKAIMR--CLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLG-AMADCAPKQLSLCLPDLIPVLSE 302 (569)
T ss_pred hccchhhhHHHHHHHHHHHH--hcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHH-HHHHhchHHHHHHHhHhhHHHHH
Confidence 99999999999999999998 56643 55666666666667888887777776 77777667777777899999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhh
Q 000200 453 CLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486 (1871)
Q Consensus 453 ~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~ 486 (1871)
.|.|+.++||++|.+||-.+-.++....+.++..
T Consensus 303 vl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip 336 (569)
T KOG1242|consen 303 VLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIP 336 (569)
T ss_pred HHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 9999999999999999999888888776666654
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00049 Score=86.90 Aligned_cols=569 Identities=19% Similarity=0.218 Sum_probs=310.9
Q ss_pred cccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcC
Q 000200 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK 415 (1871)
Q Consensus 336 DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~K 415 (1871)
|-........-.+|..||++-|-.| .+..|=--+--+-.-||+-...|.-.++.+ +.+..++.-+...-++|
T Consensus 452 ded~yar~egreIisnLakaaGla~------mistmrpDidn~deYVRnttarafavvasa--lgip~llpfLkavc~Sk 523 (1172)
T KOG0213|consen 452 DEDYYARVEGREIISNLAKAAGLAT------MISTMRPDIDNKDEYVRNTTARAFAVVASA--LGIPALLPFLKAVCGSK 523 (1172)
T ss_pred cchHHHhhchHHHHHHHHHHhhhHH------HHHhhcCCcccccHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHhccc
Confidence 3344445566667777776544222 222333334445566777777777777765 77888888777766766
Q ss_pred -CchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh---hHHHHHhhcCCH-
Q 000200 416 -VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM---RPLERSIEKLDD- 490 (1871)
Q Consensus 416 -nP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge---~~l~~~l~~Ld~- 490 (1871)
..+.|--..+.....-.-...+.+ ..++.++.++-++|.|.+..||--++-+|+++....|. +.|...+.-|-.
T Consensus 524 kSwqaRhTgIkivqqIail~Gcsvl-phl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg 602 (1172)
T KOG0213|consen 524 KSWQARHTGIKIVQQIAILSGCSVL-PHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG 602 (1172)
T ss_pred cchhhhchhhHHHHHHHHHhcchhh-hhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 677776555544433222233333 44588999999999999999999999999999999873 333333322211
Q ss_pred HH--HHH-HHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 000200 491 VR--RNK-LSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKD 567 (1871)
Q Consensus 491 ~k--k~K-I~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~ 567 (1871)
++ +.| +..+++.-+..-+-.. ++-. .=-.+.- +.--.+
T Consensus 603 ir~hrgk~laafLkAigyliplmd--------------~eya-~yyTrev---mlil~r--------------------- 643 (1172)
T KOG0213|consen 603 IRQHRGKELAAFLKAIGYLIPLMD--------------AEYA-SYYTREV---MLILIR--------------------- 643 (1172)
T ss_pred HHHccChHHHHHHHHHhhcccccc--------------HHHH-HHhHHHH---HHHHHH---------------------
Confidence 11 111 1112221110000000 0000 0000000 000000
Q ss_pred CCCCcccccCCCCCCCCCCCCCCHHHHH-------HHH-------hccCcHhHHHhhhhccHHHHHHH----HHHHHHHH
Q 000200 568 GSGKQETSKLTEAPEDVEPSEMSLEEIE-------SRL-------GSLIPADTVGQLKSAVWKERLEA----ISSLRQQV 629 (1871)
Q Consensus 568 ~~~~~~~s~~~~~~~~~~~~~~s~ee~e-------~~~-------~~l~~~~i~~~L~s~~WK~RL~a----~e~l~~~v 629 (1871)
+.....||.. .+. ..++..|++.-++.+=|-.|+++ +..+.+.-
T Consensus 644 ------------------Ef~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~tt 705 (1172)
T KOG0213|consen 644 ------------------EFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTT 705 (1172)
T ss_pred ------------------hhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHH
Confidence 0000000000 000 12566788888999999999987 33332211
Q ss_pred HhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcC--CCCccchhhhccchhhccccchhhhHH-HHHH
Q 000200 630 EAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--KFPKKCVVLCLLGISERVADIKTRAHA-MKCL 706 (1871)
Q Consensus 630 ~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~--~fs~~~~~~~l~~lveKlgD~K~r~~a-~e~L 706 (1871)
-+.-..-...+++-|.+. .++|-|-|--+.+.+.+..+..+.+ .|..+.....+.+++--+.+.-+-+.+ -..+
T Consensus 706 v~ia~KvG~~~~v~R~v~---~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gf 782 (1172)
T KOG0213|consen 706 VEIAAKVGSDPIVSRVVL---DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGF 782 (1172)
T ss_pred HHHHHHhCchHHHHHHhh---hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhH
Confidence 111111123455555554 4789999988888888888777653 455555555555544443333221111 1111
Q ss_pred HHHHHhhch------HhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHH
Q 000200 707 TTFSEAVGP------GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780 (1871)
Q Consensus 707 ~~~aE~~~~------~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi 780 (1871)
-+++.+++- .-++..++.. .++|+|||++.+...|+.+.. + ++.|| +
T Consensus 783 g~V~~~lg~r~kpylpqi~stiL~r-Lnnksa~vRqqaadlis~la~-----------V---lktc~-e----------- 835 (1172)
T KOG0213|consen 783 GTVVNALGGRVKPYLPQICSTILWR-LNNKSAKVRQQAADLISSLAK-----------V---LKTCG-E----------- 835 (1172)
T ss_pred HHHHHHHhhccccchHHHHHHHHHH-hcCCChhHHHHHHHHHHHHHH-----------H---HHhcc-H-----------
Confidence 122222211 1122333333 367778887777777665541 1 11110 0
Q ss_pred HHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCC-CCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHH
Q 000200 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF-EGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLV 859 (1871)
Q Consensus 781 ~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~-~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~ 859 (1871)
-.+-.|+|--|..+|+.+-|..|-.|-.-.--+-. -|-.. + .-|--||.+.|||-|
T Consensus 836 ---e~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~k--m-----------------~pPi~dllPrltPIL- 892 (1172)
T KOG0213|consen 836 ---EKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK--M-----------------TPPIKDLLPRLTPIL- 892 (1172)
T ss_pred ---HHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccc--c-----------------CCChhhhcccchHhh-
Confidence 01223344444445544444333333222221100 00000 0 012235666678743
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHH---HHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhh
Q 000200 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG---GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1871)
Q Consensus 860 ~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~---aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~ 936 (1871)
.++-=|+--..++=|..|...+.-++.+- |-++ .|-.-|+--||.+-..|.+..|.||.|.||. -
T Consensus 893 ---knrheKVqen~IdLvg~IadrgpE~v~aR---EWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq------d 960 (1172)
T KOG0213|consen 893 ---KNRHEKVQENCIDLVGTIADRGPEYVSAR---EWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ------D 960 (1172)
T ss_pred ---hhhHHHHHHHHHHHHHHHHhcCcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH------H
Confidence 44556667777888888887543333332 2222 2333445679999999999999999999974 4
Q ss_pred hhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHH---HHHHHHhccCCCCcchhhh
Q 000200 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLF---DWLSKQLTGLSGFPDAAHL 1013 (1871)
Q Consensus 937 l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l---~wL~~~l~~~~~~~~~~~~ 1013 (1871)
++..++..|+-+.-+.|.+..-++-.+++.||.=.++|.+..-...|..| +...+| .|+-++..++ +.+....
T Consensus 961 VLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~n--VQnGVLkalsf~Feyigem--skdYiya 1036 (1172)
T KOG0213|consen 961 VLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEAN--VQNGVLKALSFMFEYIGEM--SKDYIYA 1036 (1172)
T ss_pred HHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhH--HHHhHHHHHHHHHHHHHHH--hhhHHHH
Confidence 67778888888899999999999999999999888888666555545332 344444 4554554443 3456667
Q ss_pred hhHH-hhhcCCCCHHHHHHHHHHHHHH
Q 000200 1014 LKPA-SIAMTDKSSDVRKAAEACIVEI 1039 (1871)
Q Consensus 1014 ~~p~-~~~L~Dr~~dVRkaA~~~L~~~ 1039 (1871)
+.|+ -..|+||++--|.-|..++-.+
T Consensus 1037 v~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1037 VTPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred hhHHHHHhhccccHHHHHHHHHHHHHH
Confidence 7774 4599999999999888776544
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.6e-05 Score=96.15 Aligned_cols=506 Identities=16% Similarity=0.202 Sum_probs=297.0
Q ss_pred ccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc----CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCCh
Q 000200 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436 (1871)
Q Consensus 361 ~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~----~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~ 436 (1871)
.+...+++|.+|+-|+---+.+|..+..|++.+.-.. ...++.++|.+..--.+.+|.||.+...=|.-.++-.+.
T Consensus 169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d 248 (885)
T KOG2023|consen 169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD 248 (885)
T ss_pred cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH
Confidence 3668899999999999999999999999998765321 134667777777666788899999999988888875543
Q ss_pred hHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHH-hChhHHHHHhhcCCHHHHHHHH-----HHHhcCCCCCCCC
Q 000200 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS-VGMRPLERSIEKLDDVRRNKLS-----EMIAGSGGDVATG 510 (1871)
Q Consensus 437 ~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~-~Ge~~l~~~l~~Ld~~kk~KI~-----e~~~~~~~~~~~~ 510 (1871)
-+.+.+..++..++....|.+++|-=.|+|..-++..- +-...+.+|+.+|=|.-..+.. ..+-+..
T Consensus 249 -kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~------ 321 (885)
T KOG2023|consen 249 -KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNN------ 321 (885)
T ss_pred -hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCc------
Confidence 23344578889999999999999999999988887744 3356788888776554332210 0110000
Q ss_pred CCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCC
Q 000200 511 TSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMS 590 (1871)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s 590 (1871)
..-..++ -+ . .-.+|-=. |+...+.+... +.+|..+.+..
T Consensus 322 eeD~~vp----------Dr------e------eDIkPRfh----------ksk~~~~~~~~--------~~eDdddDe~D 361 (885)
T KOG2023|consen 322 EEDESVP----------DR------E------EDIKPRFH----------KSKEHGNGEDA--------DDEDDDDDEDD 361 (885)
T ss_pred cccccCC----------ch------h------hhccchhh----------hchhccCcccc--------ccccccccccc
Confidence 0000000 00 0 00111100 11111111100 11222223333
Q ss_pred HHHHHHHHhccCcHhHHHhhhhccHHHHHHH---HHHHHHHHHhhhccchhHHHHHHHHHh---cCCCccchHHHHHHHH
Q 000200 591 LEEIESRLGSLIPADTVGQLKSAVWKERLEA---ISSLRQQVEAVQNLDQSVEILVRLVCM---LPGWSEKNVQVQQQVI 664 (1871)
Q Consensus 591 ~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a---~e~l~~~v~~~~~~~~~~~~lvr~l~~---~PgwkesNfqV~~~~l 664 (1871)
.+|+ .++|.-|.-+ +.-|...+.. .-.++++=.|.. +..| .|...++
T Consensus 362 DdD~-----------------~~dWNLRkCSAAaLDVLanvf~~-----elL~~l~PlLk~~L~~~~W-----~vrEagv 414 (885)
T KOG2023|consen 362 DDDA-----------------FSDWNLRKCSAAALDVLANVFGD-----ELLPILLPLLKEHLSSEEW-----KVREAGV 414 (885)
T ss_pred cccc-----------------cccccHhhccHHHHHHHHHhhHH-----HHHHHHHHHHHHHcCcchh-----hhhhhhH
Confidence 3333 2478877643 3333333322 123344333322 2345 4556666
Q ss_pred HHHHHHHHhcCCCCccchhhhccchhhccccch--hhhHHHHHHHHHHHh---hch----HhHHHHHHHhhhhcCChhhH
Q 000200 665 EVINYLAATATKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEA---VGP----GFIFERLYKIMKDHKNPKVL 735 (1871)
Q Consensus 665 eil~~la~~~~~fs~~~~~~~l~~lveKlgD~K--~r~~a~e~L~~~aE~---~~~----~~V~~~l~~~~~~~KnPKv~ 735 (1871)
=++.++|+.+-.+.-.....++|.++.-+.|-| +|...+=+|..|+-= .++ ..|++.++..+ =.+|-|||
T Consensus 415 LAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~l-lD~NK~VQ 493 (885)
T KOG2023|consen 415 LALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRL-LDSNKKVQ 493 (885)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHH-hcccHHHH
Confidence 677888887655555555678888888888877 677766677766641 122 23444444443 36788888
Q ss_pred HHHHHHHHHHHHHhccCccch-HhHHHHHhhh--cCCCccHHHHHHHHHHHHHHHhhhCchh--HhhhhcchHHHHHHHH
Q 000200 736 SEGILWMVSAVEDFGVSHLKL-KDLIDFCKDT--GLQSSAAATRNATIKLLGALHKFVGPDI--KGFLADVKPALLSALD 810 (1871)
Q Consensus 736 ~e~l~wl~~ai~eFG~~~~~~-K~li~~~k~~--~l~~sN~~VR~aAi~Ll~~ly~~~G~~l--~~~l~dlkpall~~ie 810 (1871)
..+|.-++...++-|-.-|+. ..+++.+-.+ ..++.|=-|-=- .+|++--.+|..| ..|++=+=|.|+
T Consensus 494 EAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYD---AIgtlAdsvg~~Ln~~~YiqiLmPPLi---- 566 (885)
T KOG2023|consen 494 EAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYD---AIGTLADSVGHALNKPAYIQILMPPLI---- 566 (885)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHH---HHHHHHHHHHHhcCcHHHHHHhccHHH----
Confidence 888888888888888765542 2333322221 012222222111 1334444455544 233433333333
Q ss_pred HHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCC
Q 000200 811 AEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP 890 (1871)
Q Consensus 811 ~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p 890 (1871)
+.|+..+.+. -|++|=-...+.|...+-..+--=.|-+=.-...-+++-++.- -+.+.
T Consensus 567 ~KW~~lsd~D---------------------KdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~-~~~~~ 624 (885)
T KOG2023|consen 567 EKWELLSDSD---------------------KDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLL-AKVQQ 624 (885)
T ss_pred HHHHhcCccc---------------------chHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHH-HhccC
Confidence 3344443321 2456665555555555555554555666555555554333211 12222
Q ss_pred CCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhh--hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc
Q 000200 891 AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1871)
Q Consensus 891 ~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~--k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g 968 (1871)
...++.+ .+..+..+|..++.+|+|+|.+.+..+ ..++.=++.|+.|.-+-||+.+-+-|.-....|
T Consensus 625 ~~~~~~p----------dkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c- 693 (885)
T KOG2023|consen 625 DPTVEAP----------DKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKAC- 693 (885)
T ss_pred CccccCC----------CcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-
Confidence 2224432 366777899999999999999999763 348888999999999999999999999888888
Q ss_pred chhhhHHHHHHHh
Q 000200 969 LDKMVPYVTTALT 981 (1871)
Q Consensus 969 l~~~~~~i~~~L~ 981 (1871)
.+.+.|.+.+.|.
T Consensus 694 ~~~v~p~~~~fl~ 706 (885)
T KOG2023|consen 694 FEHVIPNLADFLP 706 (885)
T ss_pred HHhccchHHHHHH
Confidence 6677776666554
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00031 Score=87.06 Aligned_cols=279 Identities=15% Similarity=0.172 Sum_probs=203.8
Q ss_pred cchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc-----
Q 000200 894 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH----- 968 (1871)
Q Consensus 894 geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g----- 968 (1871)
.++++-|+.|+.+.|.+.-+--+.++..+=..=+-.|-.|.--++++++.+|+|+-..||+-+-.+|+.+....-
T Consensus 166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s 245 (675)
T KOG0212|consen 166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS 245 (675)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence 788999999999999999999999999998888888999999999999999999999999999999998887653
Q ss_pred --chhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCC--cchhhhhhHHhhhcCCCCH-HHHHHHHHHHHHHHHhc
Q 000200 969 --LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSS-DVRKAAEACIVEILRAG 1043 (1871)
Q Consensus 969 --l~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~--~~~~~~~~p~~~~L~Dr~~-dVRkaA~~~L~~~m~~~ 1043 (1871)
++.+.+.+..-+.++ +|+.+.-++.|+.+.+.-.+.. +-...++..++-|+.|.-. ..+..|+.+-+.+|+.+
T Consensus 246 ~d~~~~i~vlv~~l~ss--~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 246 MDYDDMINVLVPHLQSS--EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred cCcccchhhccccccCC--cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence 233333333333333 6889999999999988665542 2344455667779988877 58888888777777766
Q ss_pred CHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchh
Q 000200 1044 GQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQD 1123 (1871)
Q Consensus 1044 G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1123 (1871)
+.+.-... +
T Consensus 324 s~~~~~~~---i-------------------------------------------------------------------- 332 (675)
T KOG0212|consen 324 SSERLKEE---I-------------------------------------------------------------------- 332 (675)
T ss_pred hhhhhccc---c--------------------------------------------------------------------
Confidence 54322211 0
Q ss_pred hhhhhhhhcccCCCChHHHHhhhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChh
Q 000200 1124 FAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRK 1203 (1871)
Q Consensus 1124 ~~~~~~~~~~~~~~~K~~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~ 1203 (1871)
+-+ .-+|- +..++++..-..++++++-+.-.....+-
T Consensus 333 ---d~~----------------------------~ii~v------------l~~~l~~~~~~tri~~L~Wi~~l~~~~p~ 369 (675)
T KOG0212|consen 333 ---DYG----------------------------SIIEV------------LTKYLSDDREETRIAVLNWIILLYHKAPG 369 (675)
T ss_pred ---chH----------------------------HHHHH------------HHHHhhcchHHHHHHHHHHHHHHHhhCcc
Confidence 000 01111 22223344445577777777777666677
Q ss_pred hhhHhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHH
Q 000200 1204 DIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQI 1283 (1871)
Q Consensus 1204 ~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~ 1283 (1871)
+++...|=||--+-.-+.|+.-.|+.+.|+++.++-.-=...+| --|+-.|++-.-+-+--++.+=-=|+|++
T Consensus 370 ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~-------~~fl~sLL~~f~e~~~~l~~Rg~lIIRql 442 (675)
T KOG0212|consen 370 QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL-------RKFLLSLLEMFKEDTKLLEVRGNLIIRQL 442 (675)
T ss_pred hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH-------HHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Confidence 77777777777776778999999999999999877655444444 56777777777664445666666799999
Q ss_pred hhccCccchHHH
Q 000200 1284 VNFYSATKTLPY 1295 (1871)
Q Consensus 1284 ~~vyp~skvf~~ 1295 (1871)
|..--+.+||.-
T Consensus 443 C~lL~aE~IYr~ 454 (675)
T KOG0212|consen 443 CLLLNAERIYRS 454 (675)
T ss_pred HHHhCHHHHHHH
Confidence 999999999987
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0013 Score=85.27 Aligned_cols=379 Identities=18% Similarity=0.165 Sum_probs=228.6
Q ss_pred hhhhhcc--ChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhH
Q 000200 291 WEGVKAT--KWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1871)
Q Consensus 291 ~~~l~s~--KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~ 368 (1871)
-+-+++. +=++|++++..|.-+...-. |...+.-.+-+.+...|..+-.++-=.+..++.. =......+.
T Consensus 10 ~~~~~~~~~~~~~~~~~l~kli~~~~~G~----~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~----~~~~~~l~~ 81 (526)
T PF01602_consen 10 AKILNSFKIDISKKKEALKKLIYLMMLGY----DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHE----DPELLILII 81 (526)
T ss_dssp HHHHHCSSTHHHHHHHHHHHHHHHHHTT-------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTT----SHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCC----CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc----chhHHHHHH
Confidence 3334444 66788899988766432111 2333444444555555554333333333322222 122477889
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhh-hH
Q 000200 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-YV 447 (1871)
Q Consensus 369 ~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~-~~ 447 (1871)
+.+..-+.+..+.+|..+..+|-.+... .-.+.+...|...+.|++|-||..++.-+.+++...+.. +.. +.
T Consensus 82 n~l~kdl~~~n~~~~~lAL~~l~~i~~~--~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~-----~~~~~~ 154 (526)
T PF01602_consen 82 NSLQKDLNSPNPYIRGLALRTLSNIRTP--EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL-----VEDELI 154 (526)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHHHHH-SH--HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC-----HHGGHH
T ss_pred HHHHHhhcCCCHHHHHHHHhhhhhhccc--chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH-----HHHHHH
Confidence 9999999999999999888888887643 235567788889999999999999999999999875332 233 79
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh---hHHHHH-------hhcCCHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 000200 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGM---RPLERS-------IEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQ 517 (1871)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge---~~l~~~-------l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~ 517 (1871)
+.+.++++|+++.|+-+|..++..+ +.-.. ..+..+ +...++--.-++-.++....
T Consensus 155 ~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~------------- 220 (526)
T PF01602_consen 155 PKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA------------- 220 (526)
T ss_dssp HHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST-------------
T ss_pred HHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcc-------------
Confidence 9999999999999999999999888 21111 111111 12233333333333332210
Q ss_pred CCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 000200 518 TSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESR 597 (1871)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~ 597 (1871)
...+++...
T Consensus 221 ----------------------------------------------------------------------~~~~~~~~~- 229 (526)
T PF01602_consen 221 ----------------------------------------------------------------------PMEPEDADK- 229 (526)
T ss_dssp ----------------------------------------------------------------------SSSHHHHHH-
T ss_pred ----------------------------------------------------------------------cCChhhhhH-
Confidence 001111110
Q ss_pred HhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCC
Q 000200 598 LGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF 677 (1871)
Q Consensus 598 ~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~f 677 (1871)
..+-+.+...|.++++-.+++++.-+...-....-.....+.+++++. =+|.| +.--+++.+..++.....+
T Consensus 230 --~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~----s~~~n--vr~~~L~~L~~l~~~~~~~ 301 (526)
T PF01602_consen 230 --NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLS----SSDPN--VRYIALDSLSQLAQSNPPA 301 (526)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHT----SSSHH--HHHHHHHHHHHHCCHCHHH
T ss_pred --HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhh----cccch--hehhHHHHHHHhhcccchh
Confidence 122245567777999999999999887443332212233455666653 13444 4455677777766543111
Q ss_pred CccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchH
Q 000200 678 PKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLK 757 (1871)
Q Consensus 678 s~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K 757 (1871)
-. .....+ .++..--|.-+|..+-++|..++.......|+.++++++.+...+.++.+++.-++.+...|. -+.+
T Consensus 302 v~-~~~~~~-~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~---~~~~ 376 (526)
T PF01602_consen 302 VF-NQSLIL-FFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFP---PDAE 376 (526)
T ss_dssp HG-THHHHH-HHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG---SSHH
T ss_pred hh-hhhhhh-heecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccC---chHH
Confidence 11 111111 222334455688899999999999999999999999997566688899999999999988883 3445
Q ss_pred hHHHHHhhhcCCCccHHHHHHHHHHH
Q 000200 758 DLIDFCKDTGLQSSAAATRNATIKLL 783 (1871)
Q Consensus 758 ~li~~~k~~~l~~sN~~VR~aAi~Ll 783 (1871)
..++.+-+. +...+..|+..++..+
T Consensus 377 ~~v~~l~~l-l~~~~~~~~~~~~~~i 401 (526)
T PF01602_consen 377 WYVDTLLKL-LEISGDYVSNEIINVI 401 (526)
T ss_dssp HHHHHHHHH-HHCTGGGCHCHHHHHH
T ss_pred HHHHHHHHh-hhhccccccchHHHHH
Confidence 555555555 4444444444444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-05 Score=108.07 Aligned_cols=242 Identities=19% Similarity=0.198 Sum_probs=164.4
Q ss_pred HHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhC--chhH
Q 000200 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG--PDIK 795 (1871)
Q Consensus 718 V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G--~~l~ 795 (1871)
.++.|++.+ ++.+|.||..++.+|... |- ...++.+..+ |.+.|+.||.+|+..|+.+-.... +.+.
T Consensus 622 ~~~~L~~~L-~D~d~~VR~~Av~~L~~~----~~-----~~~~~~L~~a-L~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~ 690 (897)
T PRK13800 622 SVAELAPYL-ADPDPGVRRTAVAVLTET----TP-----PGFGPALVAA-LGDGAAAVRRAAAEGLRELVEVLPPAPALR 690 (897)
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHhhh----cc-----hhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhccCchHHHH
Confidence 456677665 799999999999988764 32 3456666677 999999999999999876622111 1222
Q ss_pred hhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHH
Q 000200 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (1871)
Q Consensus 796 ~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe 875 (1871)
..|++-.|-.....=.-+.... ..-+..|+..+.|++|-+|.+|+.
T Consensus 691 ~~L~~~d~~VR~~A~~aL~~~~----------------------------------~~~~~~l~~~L~D~d~~VR~~Av~ 736 (897)
T PRK13800 691 DHLGSPDPVVRAAALDVLRALR----------------------------------AGDAALFAAALGDPDHRVRIEAVR 736 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhhc----------------------------------cCCHHHHHHHhcCCCHHHHHHHHH
Confidence 3332222211111111111100 000235778899999999999999
Q ss_pred HHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHH
Q 000200 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955 (1871)
Q Consensus 876 ~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~a 955 (1871)
++..+= + ..+|...+.|.|.-|...++..++.+...-. .-++.++..++|..+.||.+
T Consensus 737 aL~~~~-------------~-~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 737 ALVSVD-------------D-VESVAGAATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred HHhccc-------------C-cHHHHHHhcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHH
Confidence 987531 1 2356678999999998888887776644311 12677888999999999999
Q ss_pred HHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHH
Q 000200 956 TLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEAC 1035 (1871)
Q Consensus 956 a~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~ 1035 (1871)
|+.+|..+... ....+.+..+|.++ ++.+|.++..-|.+ +.. ...+.+++.+|.|.+.+||+.|-.+
T Consensus 795 A~~aLg~~g~~---~~~~~~l~~aL~d~--d~~VR~~Aa~aL~~----l~~----~~a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 795 ALAALAELGCP---PDDVAAATAALRAS--AWQVRQGAARALAG----AAA----DVAVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred HHHHHHhcCCc---chhHHHHHHHhcCC--ChHHHHHHHHHHHh----ccc----cchHHHHHHHhcCCCHHHHHHHHHH
Confidence 99999877332 23345677888865 58899998877753 221 2344678889999999999999999
Q ss_pred HHHH
Q 000200 1036 IVEI 1039 (1871)
Q Consensus 1036 L~~~ 1039 (1871)
|+.+
T Consensus 862 L~~~ 865 (897)
T PRK13800 862 LTRW 865 (897)
T ss_pred Hhcc
Confidence 9885
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00012 Score=92.45 Aligned_cols=309 Identities=15% Similarity=0.186 Sum_probs=199.5
Q ss_pred chhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccChhHHHhhchhhhcccC-hhHHHHHHHHHHHHHHhhCCc-
Q 000200 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD-QNVRASSKGLTLELCRWIGKD- 202 (1871)
Q Consensus 125 ~~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~~vv~~K~ilk~l~~lf~~~d-k~VR~ea~~L~vely~wlG~~- 202 (1871)
..+.+.+.+.+.++.=.-.-...+...+...++.+|...+..-.++..+-+...+.+ ...|+.+.--....+..+|+.
T Consensus 131 ~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~ 210 (569)
T KOG1242|consen 131 SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPF 210 (569)
T ss_pred CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCC
Confidence 344455555555553233345556666677777777777777777777777766654 344547777777777777731
Q ss_pred --hhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCccc
Q 000200 203 --PVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVD 280 (1871)
Q Consensus 203 --~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vd 280 (1871)
-+.+.| .. . | .+. |...+ ..|..+.. +...-+.. +++| -
T Consensus 211 EPyiv~~l-p~----i---l----~~~-~d~~~--~Vr~Aa~~-a~kai~~~-----------------~~~~------a 251 (569)
T KOG1242|consen 211 EPYIVPIL-PS----I---L----TNF-GDKIN--KVREAAVE-AAKAIMRC-----------------LSAY------A 251 (569)
T ss_pred CchHHhhH-HH----H---H----HHh-hccch--hhhHHHHH-HHHHHHHh-----------------cCcc------h
Confidence 122222 10 0 0 011 00011 12211110 00000000 1111 1
Q ss_pred ccCCCCchhhhhhhhccChHHHHHHHHHHHHhhh-cCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccc
Q 000200 281 ILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH 359 (1871)
Q Consensus 281 Il~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~ 359 (1871)
|=.-|| .....+...||+++..+|+-+-.+.. .|+--..-..+++..|..++.|+...|--.+.+|+..+..-...+
T Consensus 252 VK~llp--sll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~ 329 (569)
T KOG1242|consen 252 VKLLLP--SLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNP 329 (569)
T ss_pred hhHhhh--hhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccH
Confidence 111223 24455655699999999999887765 344334457789999999999999999999999999999998843
Q ss_pred cccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc------CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q 000200 360 FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG------CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433 (1871)
Q Consensus 360 F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~------~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~ 433 (1871)
-+..++|.+++.+.|-+..+.+ |++.+.... .-+|+-+++.+.-++....-.+|..|..-+-..-.-
T Consensus 330 ---dI~~~ip~Lld~l~dp~~~~~e----~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~L 402 (569)
T KOG1242|consen 330 ---DIQKIIPTLLDALADPSCYTPE----CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKL 402 (569)
T ss_pred ---HHHHHHHHHHHHhcCcccchHH----HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh
Confidence 3777899999999999977774 555554321 134666777788899888877776665544433332
Q ss_pred C-ChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000200 434 S-SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1871)
Q Consensus 434 ~-~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l 481 (1871)
. .+..+.+++..++|.+-+.+.|..|+||.-++.+||++.+-+|++.+
T Consensus 403 veDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f 451 (569)
T KOG1242|consen 403 VEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF 451 (569)
T ss_pred hcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc
Confidence 2 45566677888999999999999999999999999999999998765
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00012 Score=98.64 Aligned_cols=514 Identities=17% Similarity=0.174 Sum_probs=309.0
Q ss_pred hHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC--hhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000200 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS--KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1871)
Q Consensus 404 ~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~--~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l 481 (1871)
+.+.+.....+.||..|...+-||--.++.+. +... -.++.+.-.++..|.|.++=+.|-|...||.+.-+-|.. +
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~-l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~-~ 896 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVV-LMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS-L 896 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhh-hccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch-h
Confidence 34555567779999999999999988887653 2222 224677899999999999999999999999877665532 2
Q ss_pred HHHhhcCCHHHHHHHHHHH----hcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCC
Q 000200 482 ERSIEKLDDVRRNKLSEMI----AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKG 557 (1871)
Q Consensus 482 ~~~l~~Ld~~kk~KI~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~ 557 (1871)
|+.-+...+ +|.+. . .+-.... .--+
T Consensus 897 ----------k~~LV~sL~~tl~~Gkr~-------~------------~~vs~eT--elFq------------------- 926 (1702)
T KOG0915|consen 897 ----------KKSLVDSLVNTLTGGKRK-------A------------IKVSEET--ELFQ------------------- 926 (1702)
T ss_pred ----------HHHHHHHHHHHHhccccc-------c------------ceeccch--hccc-------------------
Confidence 222222222 22110 0 0000000 0000
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHH---Hhhhh--ccHHHHHHHHHHHHHHHHh-
Q 000200 558 GPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV---GQLKS--AVWKERLEAISSLRQQVEA- 631 (1871)
Q Consensus 558 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~---~~L~s--~~WK~RL~a~e~l~~~v~~- 631 (1871)
.|+-+..+ .+ -.--+.-|+...++++-.+|++ -+|.. +-|.-|+.|.=.+....+.
T Consensus 927 ----~G~Lg~Tp---~G-----------g~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a 988 (1702)
T KOG0915|consen 927 ----EGTLGKTP---DG-----------GKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQA 988 (1702)
T ss_pred ----CCcCCCCC---CC-----------CcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHH
Confidence 01100000 00 0012578999999999999986 44543 4499999988777655544
Q ss_pred hhccchhH-HHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccc--hhhhHHHHHHHH
Q 000200 632 VQNLDQSV-EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTT 708 (1871)
Q Consensus 632 ~~~~~~~~-~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~--K~r~~a~e~L~~ 708 (1871)
.+...+.. +++-|.... =-|.|..|++.|-.|-..+..-...........++..+..-+++. ++|+.++-+|..
T Consensus 989 ~~kl~p~l~kLIPrLyRY---~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~d 1065 (1702)
T KOG0915|consen 989 GEKLEPYLKKLIPRLYRY---QYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALAD 1065 (1702)
T ss_pred HHhhhhHHHHhhHHHhhh---ccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 33333332 333343331 158999999999999998876434455666677888888888886 789999888887
Q ss_pred HHHhhchHhHHHHH-------HHhhhhcCC-hhh-HHHHHHHHHHHHHHhccC--ccc----hHhHHHHHhhhcCCCccH
Q 000200 709 FSEAVGPGFIFERL-------YKIMKDHKN-PKV-LSEGILWMVSAVEDFGVS--HLK----LKDLIDFCKDTGLQSSAA 773 (1871)
Q Consensus 709 ~aE~~~~~~V~~~l-------~~~~~~~Kn-PKv-~~e~l~wl~~ai~eFG~~--~~~----~K~li~~~k~~~l~~sN~ 773 (1871)
+-..-..+-+.+.+ +..+-+.|- -+. -..++..++..+-.-+-. +.. +..++.|+-+-|..|+=+
T Consensus 1066 Ll~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~ 1145 (1702)
T KOG0915|consen 1066 LLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVN 1145 (1702)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchH
Confidence 77655555444433 333323331 111 112344444444333321 111 235667776657779999
Q ss_pred HHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCC----CccccccccccCCCCCCCCCCCCccc
Q 000200 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV----PKKTVRASESTSSVSSGGSDGLPRED 849 (1871)
Q Consensus 774 ~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~----p~R~~r~~~~~~~~~~~~~d~lprvD 849 (1871)
.||..+|+++..|-++-|..|++|+.++-|.++.....- + |-. ..|- .+.+.+. . |. -|..
T Consensus 1146 evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~l-E------~~vLnYls~r~--~~~e~ea----l-Dt-~R~s 1210 (1702)
T KOG0915|consen 1146 EVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSEL-E------PQVLNYLSLRL--INIETEA----L-DT-LRAS 1210 (1702)
T ss_pred HHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHcccc-c------hHHHHHHHHhh--hhhHHHH----H-HH-HHHh
Confidence 999999999999999999999999999999998765321 0 000 0111 0000000 0 00 0111
Q ss_pred cccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcCh
Q 000200 850 ISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGP 928 (1871)
Q Consensus 850 Is~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl-~DsNk~lv~~al~ii~~lA~amG~ 928 (1871)
+.. +++= +|+|+..|+ .|--..++|+.+-|..-+ +-.|-+=..-++.+|..|+.-+|.
T Consensus 1211 ~ak----------sspm-------meTi~~ci~----~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~ 1269 (1702)
T KOG0915|consen 1211 AAK----------SSPM-------METINKCIN----YIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGS 1269 (1702)
T ss_pred hhc----------CCcH-------HHHHHHHHH----hhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcc
Confidence 111 1111 344444442 222233567766665554 333444445677888899999999
Q ss_pred hHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCc
Q 000200 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP 1008 (1871)
Q Consensus 929 ~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~ 1008 (1871)
...+|+.-++-..+-.+.|...++|.+.-.|+--.+.....+.+...+ ..++.|+ +....+
T Consensus 1270 emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLi--------------e~~l~~~---l~k~es-- 1330 (1702)
T KOG0915|consen 1270 EMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLI--------------ETLLADL---LGKDES-- 1330 (1702)
T ss_pred ccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHH--------------HHHHHHH---hccCCC--
Confidence 999999999999999999999999999988888777776655543322 2344443 322221
Q ss_pred chhhhhhHHhhhcCCCCHHHHH-HHHHHHHHHHHhcCHH
Q 000200 1009 DAAHLLKPASIAMTDKSSDVRK-AAEACIVEILRAGGQE 1046 (1871)
Q Consensus 1009 ~~~~~~~p~~~~L~Dr~~dVRk-aA~~~L~~~m~~~G~~ 1046 (1871)
..+..|.-+.. +.-...|+=+ .|+++||.+.-..-|+
T Consensus 1331 ~~siscatis~-Ian~s~e~Lkn~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1331 LKSISCATISN-IANYSQEMLKNYASAILPLIFLAMHEE 1368 (1702)
T ss_pred ccchhHHHHHH-HHHhhHHHHHhhHHHHHHHHHHHHhHH
Confidence 11223333333 6666666666 6778888666555555
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0001 Score=101.49 Aligned_cols=260 Identities=19% Similarity=0.156 Sum_probs=166.9
Q ss_pred cchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHH
Q 000200 695 DIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAA 774 (1871)
Q Consensus 695 D~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~ 774 (1871)
|+.+|..|.+.|..+. +.-++..|... .+..++-|+..++.-|..+.+... +.. .+... |++.|+.
T Consensus 634 d~~VR~~Av~~L~~~~----~~~~~~~L~~a-L~D~d~~VR~~Aa~aL~~l~~~~~----~~~----~L~~~-L~~~d~~ 699 (897)
T PRK13800 634 DPGVRRTAVAVLTETT----PPGFGPALVAA-LGDGAAAVRRAAAEGLRELVEVLP----PAP----ALRDH-LGSPDPV 699 (897)
T ss_pred CHHHHHHHHHHHhhhc----chhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhccC----chH----HHHHH-hcCCCHH
Confidence 3567777777776553 23345555554 478888888888776655432111 112 23344 7788888
Q ss_pred HHHHHHHHHHHHHhhhCch--hHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccc
Q 000200 775 TRNATIKLLGALHKFVGPD--IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISG 852 (1871)
Q Consensus 775 VR~aAi~Ll~~ly~~~G~~--l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~ 852 (1871)
||.+|+..|+.+.. |+. +...|.|..|.+....=.-..++ ..
T Consensus 700 VR~~A~~aL~~~~~--~~~~~l~~~L~D~d~~VR~~Av~aL~~~-----------------------------~~----- 743 (897)
T PRK13800 700 VRAAALDVLRALRA--GDAALFAAALGDPDHRVRIEAVRALVSV-----------------------------DD----- 743 (897)
T ss_pred HHHHHHHHHHhhcc--CCHHHHHHHhcCCCHHHHHHHHHHHhcc-----------------------------cC-----
Confidence 88888888887642 211 11122222222111111111110 00
Q ss_pred CCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHh
Q 000200 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 932 (1871)
Q Consensus 853 kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k 932 (1871)
.+.++.-+.|.+|-+|.++.+.|..+-+.. ..-...|...+.|.+..|...|+..++.+ |.+
T Consensus 744 --~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~----g~~--- 805 (897)
T PRK13800 744 --VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAEL----GCP--- 805 (897)
T ss_pred --cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHhc----CCc---
Confidence 134667799999999999999998765321 22356677778999988888888877665 211
Q ss_pred hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhh
Q 000200 933 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012 (1871)
Q Consensus 933 ~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~ 1012 (1871)
..+.+.++..|.|....||.+|..+|... |-..-++.+..+|.++ ++.+|.++..=|.+. ... ..
T Consensus 806 --~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~--~~~VR~~A~~aL~~~----~~~---~~ 870 (897)
T PRK13800 806 --PDDVAAATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDP--HLDVRKAAVLALTRW----PGD---PA 870 (897)
T ss_pred --chhHHHHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCC--CHHHHHHHHHHHhcc----CCC---HH
Confidence 12335688999999999999999999654 4455667888888876 588999998887752 111 12
Q ss_pred hhhHHhhhcCCCCHHHHHHHHHHHH
Q 000200 1013 LLKPASIAMTDKSSDVRKAAEACIV 1037 (1871)
Q Consensus 1013 ~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1871)
...++...|+|.+++||+.|..+|.
T Consensus 871 a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 871 ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 3344567889999999999999885
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.024 Score=72.45 Aligned_cols=337 Identities=19% Similarity=0.238 Sum_probs=238.7
Q ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccc-cccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc----
Q 000200 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---- 397 (1871)
Q Consensus 323 y~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~-F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~---- 397 (1871)
...|++.+..+|..--..|-+.|++.|+.||.-|..- =.+-..-+-..+.|.++|-=+.|.-.+..||-+|+...
T Consensus 797 lpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 797 LPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccc
Confidence 5678888888999888899999999999999999743 12234445556789999999999999999999998862
Q ss_pred -CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHH---HHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 398 -CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI---CMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 398 -~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~---l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
.-++.+++..+...|+||.-.|...+..++.+.-...+.-.. .+.++-+ |+..|---+.++|.+|.+.||-|.
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~---aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVS---AREWMRICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 124678999999999999999999999999988766543221 1444444 445566788999999999999999
Q ss_pred HHhC-hhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCC
Q 000200 474 KSVG-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAP 552 (1871)
Q Consensus 474 k~~G-e~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 552 (1871)
+.+| .+.+..++++|+- +|.-.... +.-.-+ -
T Consensus 954 kaIGPqdVLatLlnnLkv------qeRq~Rvc----TtvaIa-------------------------------------I 986 (1172)
T KOG0213|consen 954 KAIGPQDVLATLLNNLKV------QERQNRVC----TTVAIA-------------------------------------I 986 (1172)
T ss_pred HhcCHHHHHHHHHhcchH------HHHHhchh----hhhhhh-------------------------------------h
Confidence 9999 5667778888853 33322210 000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhh
Q 000200 553 ASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV 632 (1871)
Q Consensus 553 ~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~ 632 (1871)
+ + +...++
T Consensus 987 V----------------a-----------E~c~pF--------------------------------------------- 994 (1172)
T KOG0213|consen 987 V----------------A-----------ETCGPF--------------------------------------------- 994 (1172)
T ss_pred h----------------h-----------hhcCch---------------------------------------------
Confidence 0 0 000000
Q ss_pred hccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccch--hhhHHHHHHHHHH
Q 000200 633 QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFS 710 (1871)
Q Consensus 633 ~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K--~r~~a~e~L~~~a 710 (1871)
.+|--++ -.+.-.|..||+.+|..++.+.+.-+..++..++.++|-|-|-+.|.- .|..+..++.-++
T Consensus 995 -------tVLPalm---neYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 995 -------TVLPALM---NEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred -------hhhHHHH---hhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 0111111 124556888999999999999998888899999999999999999854 5788888777765
Q ss_pred HhhchHhH----HHHHHHhhhh---cCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHH
Q 000200 711 EAVGPGFI----FERLYKIMKD---HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLL 783 (1871)
Q Consensus 711 E~~~~~~V----~~~l~~~~~~---~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll 783 (1871)
=- .+.+- +-+|+..+.- --+|-|++.....|-.+=. .+.+..+..|+-. ||=|.-..||..=-.++
T Consensus 1065 Lg-~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~-----~Lg~~~~~~Y~~Q-GLFHParkVR~~yw~vy 1137 (1172)
T KOG0213|consen 1065 LG-VPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRV-----ALGPQAMLKYCLQ-GLFHPARKVRKRYWTVY 1137 (1172)
T ss_pred cC-CCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHH-----HhchHHHHHHHHH-hccCcHHHHHHHHHHHH
Confidence 43 22222 2233322221 2468777665544433332 2445688999987 59999999999999999
Q ss_pred HHHHhhhCchhHhhh
Q 000200 784 GALHKFVGPDIKGFL 798 (1871)
Q Consensus 784 ~~ly~~~G~~l~~~l 798 (1871)
-.||.+-.++|-.++
T Consensus 1138 n~my~~~~dalv~~y 1152 (1172)
T KOG0213|consen 1138 NSMYHGSQDALVACY 1152 (1172)
T ss_pred HhHhhcccchhhhcc
Confidence 999998888888777
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0025 Score=82.77 Aligned_cols=389 Identities=15% Similarity=0.150 Sum_probs=256.5
Q ss_pred hhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHH
Q 000200 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369 (1871)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~ 369 (1871)
-..-+.+++-.+|+=+-=.+..+.... ++-.--.+..|.+=+.|.|-.+...|+++++.++. ...+..+++
T Consensus 47 vi~l~~s~~~~~Krl~yl~l~~~~~~~---~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~~~~l~~ 117 (526)
T PF01602_consen 47 VIKLISSKDLELKRLGYLYLSLYLHED---PELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEMAEPLIP 117 (526)
T ss_dssp HHCTCSSSSHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cchhhHHHH
Confidence 344456788888887666555543211 00122367788888889999999999999999982 345678899
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh-hHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHH
Q 000200 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 448 (1871)
Q Consensus 370 ~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~-~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~ 448 (1871)
.+..-+.++.+.||.++.-|+-.++...--.+.+ +.+.+...+..++|.|+..++..+..+ ..++.....++..+..
T Consensus 118 ~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~ 195 (526)
T PF01602_consen 118 DVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIR 195 (526)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHH
Confidence 9999999999999999999999999872223445 689999999999999999999999988 3333332244566677
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHHHHHhChhH-----HHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCC
Q 000200 449 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP-----LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (1871)
Q Consensus 449 ~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~-----l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1871)
.+.+.+.+.+|-++-....+|..+...--+.. +..++.-|......-+-|++.-
T Consensus 196 ~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~--------------------- 254 (526)
T PF01602_consen 196 ILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRL--------------------- 254 (526)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred HhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHH---------------------
Confidence 77788899999887776666554332211111 1111111111111111111100
Q ss_pred CCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCc
Q 000200 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (1871)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~ 603 (1871)
.. ....+.+ +...+-
T Consensus 255 ------------------i~------------------------------------------~l~~~~~-----~~~~~~ 269 (526)
T PF01602_consen 255 ------------------II------------------------------------------KLSPSPE-----LLQKAI 269 (526)
T ss_dssp ------------------HH------------------------------------------HHSSSHH-----HHHHHH
T ss_pred ------------------HH------------------------------------------HhhcchH-----HHHhhH
Confidence 00 0000111 112223
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccch
Q 000200 604 ADTVGQLKSAVWKERLEAISSLRQQVEAV-QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV 682 (1871)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~e~l~~~v~~~-~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~ 682 (1871)
.-+...|.++++-.|.-+++.+....... +... ..++.+.++. .+.+..|-...++++..+++. ..+
T Consensus 270 ~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~-----~~~d~~Ir~~~l~lL~~l~~~------~n~ 337 (526)
T PF01602_consen 270 NPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLL-----YDDDPSIRKKALDLLYKLANE------SNV 337 (526)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHH-----CSSSHHHHHHHHHHHHHH--H------HHH
T ss_pred HHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhheec-----CCCChhHHHHHHHHHhhcccc------cch
Confidence 45678889999999999999998776664 3222 3444444443 467788999999999998864 245
Q ss_pred hhhccchhhccc---cchhhhHHHHHHHHHHHhhc--hHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchH
Q 000200 683 VLCLLGISERVA---DIKTRAHAMKCLTTFSEAVG--PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLK 757 (1871)
Q Consensus 683 ~~~l~~lveKlg---D~K~r~~a~e~L~~~aE~~~--~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K 757 (1871)
..++..+..-+. |.-.+..+...+..+++.+. .++.+..+++.+ ...++-+..+++..+...+....-. -.
T Consensus 338 ~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll-~~~~~~~~~~~~~~i~~ll~~~~~~---~~ 413 (526)
T PF01602_consen 338 KEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLL-EISGDYVSNEIINVIRDLLSNNPEL---RE 413 (526)
T ss_dssp HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHH-HCTGGGCHCHHHHHHHHHHHHSTTT---HH
T ss_pred hhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhh-hhccccccchHHHHHHHHhhcChhh---hH
Confidence 556666666663 55688888999999999765 467888888875 6678899999999999999774322 12
Q ss_pred hHHHHHhhhcCC-CccHHHHHHHHHHHHHHHhhhCc
Q 000200 758 DLIDFCKDTGLQ-SSAAATRNATIKLLGALHKFVGP 792 (1871)
Q Consensus 758 ~li~~~k~~~l~-~sN~~VR~aAi~Ll~~ly~~~G~ 792 (1871)
.++..+.+. +. -.++.++.+++-++|+---++..
T Consensus 414 ~~l~~L~~~-l~~~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 414 KILKKLIEL-LEDISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp HHHHHHHHH-HTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred HHHHHHHHH-HHHhhHHHHHHHHHhhhcccCCcccc
Confidence 234443333 33 47888999999999997766665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.015 Score=77.30 Aligned_cols=183 Identities=19% Similarity=0.168 Sum_probs=133.0
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHccc-CCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhh
Q 000200 857 TLVKSLESPDWKVRLESIEAVNKILEEANK-RIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1871)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~ank-rI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k 935 (1871)
.+.+.-+|.+|.+|.+.++-+-.++.+-.. ++-+. ++++ +..=+.|-=--+---|.+++..++...|+.+ +..
T Consensus 483 ~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~-~~~l---~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w--~~~ 556 (759)
T KOG0211|consen 483 AIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEK-LAEL---LRTWLPDHVYSIREAAARNLPALVETFGSEW--ARL 556 (759)
T ss_pred hhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHH-HHHH---HHhhhhhhHHHHHHHHHHHhHHHHHHhCcch--hHH
Confidence 345556677999999999999888865321 11111 1222 2222444444555667888888999989333 455
Q ss_pred hhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHH----hcccCCcchHHHHHHHHHHHhccCCCCcchh
Q 000200 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL----TDAKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1011 (1871)
Q Consensus 936 ~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L----~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~ 1011 (1871)
.++|-++...++..-.+|.+...++..++..+|-+...+++...+ .++ +|+.|-.++..|.+-++.+.. +...
T Consensus 557 ~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~--vanVR~nvak~L~~i~~~L~~-~~~~ 633 (759)
T KOG0211|consen 557 EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDP--VANVRINVAKHLPKILKLLDE-SVRD 633 (759)
T ss_pred HhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCC--chhhhhhHHHHHHHHHhhcch-HHHH
Confidence 788999999999888999999999999999999766655544444 344 588999999999887766653 4567
Q ss_pred hhhhHHhhhc-CCCCHHHHHHHHHHHHHHHHhcCHHHH
Q 000200 1012 HLLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQETI 1048 (1871)
Q Consensus 1012 ~~~~p~~~~L-~Dr~~dVRkaA~~~L~~~m~~~G~~~~ 1048 (1871)
..+.|+..+| .|.+.|||-.|+.+.+.++-+.-|..+
T Consensus 634 ~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~~~~ 671 (759)
T KOG0211|consen 634 EEVLPLLETLSSDQELDVRYRAILAFGSIELSRLESSL 671 (759)
T ss_pred HHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHhhhH
Confidence 7788877777 799999999999999988776655543
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0094 Score=79.86 Aligned_cols=315 Identities=13% Similarity=0.148 Sum_probs=194.1
Q ss_pred HHhhhc-CChhhHHHHHHHHHHHHhhcc----hhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCC------------
Q 000200 99 AAKCLT-GRPKTVEKAQAVFMLWVELEA----VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA------------ 161 (1871)
Q Consensus 99 veK~L~-~r~~tk~~a~e~~l~~vE~e~----~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~------------ 161 (1871)
+.|||+ ..|-.+..|.=|++.+..... ...+++.|...+..++|-|++.|+.++.++-...+-
T Consensus 145 lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~L 224 (746)
T PTZ00429 145 LRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRL 224 (746)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHH
Confidence 578887 468888888888888765432 124667788889999999999999999888543220
Q ss_pred ------------------------Cc-cChhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHH
Q 000200 162 ------------------------KI-IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTM 216 (1871)
Q Consensus 162 ------------------------~v-v~~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~lk~~L~~~Lkp~q 216 (1871)
.- -....|+..+-+.+.|+|.+|-=+|.+++..+...+.++.++ ..+..+++.+
T Consensus 225 l~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~-~~~~rl~~pL 303 (746)
T PTZ00429 225 VYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIE-RCTVRVNTAL 303 (746)
T ss_pred HHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHH-HHHHHHHHHH
Confidence 00 002347777778888999999999999888776655444332 2334455444
Q ss_pred HHHHHHHHHhcCCCCCCcchh--hhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhh
Q 000200 217 KKELEVELVNVSGTARPTRKI--RAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV 294 (1871)
Q Consensus 217 ~keLe~efek~~~~~~P~R~~--Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l 294 (1871)
+. | ....+-.||+ |.-..-. . ..| +++..-- .-|+-..
T Consensus 304 v~-L-------~ss~~eiqyvaLr~I~~i~-------~-----------------~~P-------~lf~~~~-~~Ff~~~ 343 (746)
T PTZ00429 304 LT-L-------SRRDAETQYIVCKNIHALL-------V-----------------IFP-------NLLRTNL-DSFYVRY 343 (746)
T ss_pred HH-h-------hCCCccHHHHHHHHHHHHH-------H-----------------HCH-------HHHHHHH-Hhhhccc
Confidence 32 1 1122334443 2221100 0 001 1111111 2477777
Q ss_pred hccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHH
Q 000200 295 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK 374 (1871)
Q Consensus 295 ~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLek 374 (1871)
.++.- .|.+.||-|..|++ +.|..++++.|+..+.|.+..++..++++||.+|..+ ...+..++..+++-
T Consensus 344 ~Dp~y-IK~~KLeIL~~Lan-----e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~----~~~a~~cV~~Ll~l 413 (746)
T PTZ00429 344 SDPPF-VKLEKLRLLLKLVT-----PSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV----DSVAPDCANLLLQI 413 (746)
T ss_pred CCcHH-HHHHHHHHHHHHcC-----cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC----hHHHHHHHHHHHHH
Confidence 77765 79999999988753 3457899999999999999999999999999999764 44566666666666
Q ss_pred hccCCHHHHHHHHHHHHHHHHh----------------------------------cCCChh---hhHHHHHHHhhcCCc
Q 000200 375 LKEKKPTVAESLTQTLQAMHKA----------------------------------GCLNLV---DVVEDVKTSVKNKVP 417 (1871)
Q Consensus 375 lKEKK~~V~eAl~~aLda~~~~----------------------------------~~~~l~---~~~e~i~~al~~KnP 417 (1871)
+..+-.-+.+++ ..+-.++.. .|.-++ ++++.+...+....+
T Consensus 414 l~~~~~~v~e~i-~vik~IlrkyP~~~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~L~~~i~~f~~E~~ 492 (746)
T PTZ00429 414 VDRRPELLPQVV-TAAKDIVRKYPELLMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDIIQRFIDTIMEHEQ 492 (746)
T ss_pred hcCCchhHHHHH-HHHHHHHHHCccHHHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHHHHHHHhhhccCCH
Confidence 655433333222 111111111 121122 233333333345678
Q ss_pred hhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhh-CCCCHHHHHHHHHHH
Q 000200 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL-NDGTPEVRDAAFSVL 469 (1871)
Q Consensus 418 ~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l-~Ds~~~VR~aA~~~l 469 (1871)
.||.+++.-..+++-..+... . ..+...+-.+. +|.+++|||.|+.-.
T Consensus 493 ~VqlqlLta~vKlfl~~p~~~-~---~~l~~vL~~~t~~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 493 RVQLAILSAAVKMFLRDPQGM-E---PQLNRVLETVTTHSDDPDVRDRAFAYW 541 (746)
T ss_pred HHHHHHHHHHHHHHhcCcHHH-H---HHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 899999999888887665322 1 12233333443 568999999999644
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00087 Score=80.38 Aligned_cols=63 Identities=16% Similarity=0.225 Sum_probs=44.0
Q ss_pred HHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHH
Q 000200 709 FSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGAL 786 (1871)
Q Consensus 709 ~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~l 786 (1871)
-+.....++ +++.+ .+.++.|+.+++..+ ..+|- ..+++.+..+ +.+.|+.||..|+..||.+
T Consensus 19 ~~~~~~~~~----L~~~L-~d~d~~vR~~A~~aL----~~~~~-----~~~~~~l~~l-l~~~d~~vR~~A~~aLg~l 81 (280)
T PRK09687 19 QCKKLNDDE----LFRLL-DDHNSLKRISSIRVL----QLRGG-----QDVFRLAIEL-CSSKNPIERDIGADILSQL 81 (280)
T ss_pred HHhhccHHH----HHHHH-hCCCHHHHHHHHHHH----HhcCc-----chHHHHHHHH-HhCCCHHHHHHHHHHHHhc
Confidence 444444444 44443 789999998887664 34453 3566666667 8899999999999999874
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0018 Score=80.61 Aligned_cols=390 Identities=17% Similarity=0.153 Sum_probs=219.8
Q ss_pred cHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCc---cchHHHHhhhc---cchhHhHHHHHHHHHHHHHHhcCh
Q 000200 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT---GELFGGLRGRL---YDSNKNLVMATLITLGAVASAMGP 928 (1871)
Q Consensus 855 t~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~---geL~~aLk~rl---~DsNk~lv~~al~ii~~lA~amG~ 928 (1871)
+..+.+.++||-+--||.|--++++++.+ .+..|.+ -.++..|.+++ -++|.+= -.|-=+..++.|+|+
T Consensus 2 ~~~i~r~ltdKlYekRKaaalelEk~Vk~---l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rk--GgLiGlAA~~iaLg~ 76 (675)
T KOG0212|consen 2 SASIARGLTDKLYEKRKAAALELEKLVKD---LVNNNDYDQIRKVISELAGDYAYSPHANMRK--GGLIGLAAVAIALGI 76 (675)
T ss_pred chHhhhhhhhHHHHHHHHHHHHHHHHHHH---HHccCcHHHHHHHHHHHHHHhccCccccccc--chHHHHHHHHHHhcc
Confidence 45677889999999999999999999974 4444543 34555666766 2455433 344444556667899
Q ss_pred hHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc--chhhhHHHHHHHh----cccCCcchHHHHHHHHHHHhc
Q 000200 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALT----DAKLGAEGRKDLFDWLSKQLT 1002 (1871)
Q Consensus 929 ~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~----~~~~~p~~r~e~l~wL~~~l~ 1002 (1871)
+-.+|...++|||+.||+|+--.||--|-++|.-++..+- .-.+++.|.++|- +.-.|..+=.|++.-|.+-..
T Consensus 77 ~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIV 156 (675)
T KOG0212|consen 77 KDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIV 156 (675)
T ss_pred ccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhc
Confidence 8888999999999999999999999999999999998874 3344666777764 222355667888887776665
Q ss_pred cCCCCcchhhhhhHHhh-hcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCCC
Q 000200 1003 GLSGFPDAAHLLKPASI-AMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTS 1081 (1871)
Q Consensus 1003 ~~~~~~~~~~~~~p~~~-~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~~~~~~~~~ 1081 (1871)
......--.+...|++. .+-+.++.+|..-=.=|-.+-. +..-.|..++..+-+.-..
T Consensus 157 te~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P~~~m~~yl~~~ldGLf~-------------------- 215 (675)
T KOG0212|consen 157 TESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VPDLEMISYLPSLLDGLFN-------------------- 215 (675)
T ss_pred cccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCcHHHHhcchHHHHHHHH--------------------
Confidence 55443222334455444 7788899999643322222211 2222233332222111000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChHHHHhhhhccccccCCChhHHH
Q 000200 1082 KSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQ 1161 (1871)
Q Consensus 1082 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~~~~~~kw~f~~pr~e~ve 1161 (1871)
...+++++.|.
T Consensus 216 ---------------------------------------------------~LsD~s~eVr~------------------ 226 (675)
T KOG0212|consen 216 ---------------------------------------------------MLSDSSDEVRT------------------ 226 (675)
T ss_pred ---------------------------------------------------HhcCCcHHHHH------------------
Confidence 01122222221
Q ss_pred HHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHhHHHHHHHHHH--hccccchHHHHHHhhhhHHHH
Q 000200 1162 ELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVL--QFCKSNTTCLLKVLEFLPELF 1239 (1871)
Q Consensus 1162 ~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~~lDlllkw~tl--r~~dtN~~vl~k~Le~l~~l~ 1239 (1871)
+ ...+++.=|+.-=-+.++-+.-.-++.+...+.+..+.+-. ..+.|+-- .++-++ ++.-.=.++..++
T Consensus 227 -~---~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~---~al~Wi~efV~i~g~~--~l~~~s~il~~iL 297 (675)
T KOG0212|consen 227 -L---TDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQL---KALTWIQEFVKIPGRD--LLLYLSGILTAIL 297 (675)
T ss_pred -H---HHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHH---HHHHHHHHHhcCCCcc--hhhhhhhhhhhcc
Confidence 1 11111111111001111111112223333333333222221 12566421 222221 1111111122222
Q ss_pred HHHHhcCCcccHhHHhhhhhHHHHhhCC-ChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHH
Q 000200 1240 DTLRDEGYSLTESEAAVFLPCLVEKSGH-NIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFL 1318 (1871)
Q Consensus 1240 ~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd-~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~Ecl~el~~l 1318 (1871)
.-+ ...-.|+-+|.+..+..++.|+=. ....---.++.|+..+. .-++.-+--||.+||+|+-.+
T Consensus 298 pc~-s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~-------------~~l~~~~~~tri~~L~Wi~~l 363 (675)
T KOG0212|consen 298 PCL-SDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLT-------------KYLSDDREETRIAVLNWIILL 363 (675)
T ss_pred cCC-CCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHH-------------HHhhcchHHHHHHHHHHHHHH
Confidence 222 233344677777777766666522 11110023444444433 345566778999999999999
Q ss_pred HHhhcCcc-cCccchHHHHHHHhccCChhHHHHHHHHHHHHHHHh
Q 000200 1319 IDHHGAEI-SGQLKSLQIVASLTAERDGEIRKAALNTLATGYKIL 1362 (1871)
Q Consensus 1319 i~~~G~~v-~~~~Kal~~ia~~i~drD~~VR~AALn~l~~~y~~~ 1362 (1871)
..++|-.+ +-..--+...=+.++|++..|---+|..++.+-.-.
T Consensus 364 ~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 364 YHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS 408 (675)
T ss_pred HhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc
Confidence 99999777 444456789999999999999999999998764433
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.089 Score=66.37 Aligned_cols=565 Identities=18% Similarity=0.203 Sum_probs=324.0
Q ss_pred ccCchhHHHHHHHHHHHHHhhCCCccC-hhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhH------HHhhh
Q 000200 139 NKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKT------ILFEK 211 (1871)
Q Consensus 139 ~K~PKvvaaai~~l~~~l~~FG~~vv~-~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~lk~------~L~~~ 211 (1871)
.|.-+..-.||.++.++-.-.|..+++ ++++++.+.+++.+...-||=-+.+-+-.+..-.||--+.. .|.++
T Consensus 328 rkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g 407 (975)
T COG5181 328 RKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEG 407 (975)
T ss_pred ccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 468899999999999999999999886 99999999999999999999888888888888888622211 11111
Q ss_pred chHHHHHHHHHHHHhcCCCCCCc-------chhhhHHhHhhhhhhcccCCCCCCCCC------CCCCCCCCCCccccCCc
Q 000200 212 MRDTMKKELEVELVNVSGTARPT-------RKIRAEQDKELGQELISEDVGPGPSEE------STADVPPEIDEYELVDP 278 (1871)
Q Consensus 212 Lkp~q~keLe~efek~~~~~~P~-------R~~Rs~q~~~~~~~~~~~~~~~~~~~~------~~~~~~~~iDp~dl~~~ 278 (1871)
...--=++|-... |.-|-.-|. -++|...+- .-.+- .+.++.+-. .-=+..+.+|||-|.+.
T Consensus 408 ~~~hrgk~l~sfL-kA~g~iiplm~peYa~h~tre~m~i-v~ref---~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~ 482 (975)
T COG5181 408 ASQHRGKELVSFL-KAMGFIIPLMSPEYACHDTREHMEI-VFREF---KSPDEEMKKDLLVVERICDKVGTDTPWKLRDQ 482 (975)
T ss_pred HHhcCCchHHHHH-HHhccccccCChHhhhhhHHHHHHH-HHHHh---CCchhhcchhHHHHHHHHhccCCCCHHHHHHh
Confidence 1111112232221 222322121 012211110 00000 000000000 00012344678777765
Q ss_pred ccccCCCCchhhhhhhhccChHHHHHHHHHHHHhh--hcCCCC-CCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 000200 279 VDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA--STKRIA-PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG 355 (1871)
Q Consensus 279 vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~--~~pKi~-~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~g 355 (1871)
|- | .|+ +++|.+|...=...++.. .+--+. .+.-.-+++-+-.-..|---.--.+++..+..+-..
T Consensus 483 v~-----p--efF----~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~ 551 (975)
T COG5181 483 VS-----P--EFF----SPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSR 551 (975)
T ss_pred hc-----H--Hhh----chHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHh
Confidence 53 2 454 678998876622222100 000000 011112333333334455444444455555555555
Q ss_pred hc-cccc-cchhhhHHHHHHHhccCCHHHHH------HHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHH-
Q 000200 356 LR-THFS-GSSRFLLPVLLEKLKEKKPTVAE------SLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNW- 426 (1871)
Q Consensus 356 Lr-~~F~-~y~~~~~~~lLeklKEKK~~V~e------Al~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~- 426 (1871)
|+ .+|. +-...++-.+|-.|-|.-.++-- ++..+++...+ -.+..++..|+..|+||.|.+|+..+..
T Consensus 552 lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~k---p~l~~ivStiL~~L~~k~p~vR~~aadl~ 628 (975)
T COG5181 552 LGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGK---PHLSMIVSTILKLLRSKPPDVRIRAADLM 628 (975)
T ss_pred cccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccC---cchHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 54 3454 33455566666667666554321 11222332222 2366788999999999999999976655
Q ss_pred --HHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChh----HHHHHhhcCCHHHHHHHHHHH
Q 000200 427 --VTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR----PLERSIEKLDDVRRNKLSEMI 500 (1871)
Q Consensus 427 --L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~----~l~~~l~~Ld~~kk~KI~e~~ 500 (1871)
|+..++++... +.+.-+--+++..++.-.|+|--.-..|+-.|....|.+ +++..+..|-|+-|+|=+...
T Consensus 629 ~sl~~vlk~c~e~---~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~ 705 (975)
T COG5181 629 GSLAKVLKACGET---KELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVV 705 (975)
T ss_pred HHHHHHHHhcchH---HHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHh
Confidence 44555555432 223456678999999999999999889999999999988 666666777777776654433
Q ss_pred hcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCC
Q 000200 501 AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEA 580 (1871)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~ 580 (1871)
...- . -+ +.+....|.
T Consensus 706 ~nti------------~---------------lv-----g~I~~~~pe-------------------------------- 721 (975)
T COG5181 706 ANTI------------A---------------LV-----GTICMNSPE-------------------------------- 721 (975)
T ss_pred hhHH------------H---------------HH-----HHHHhcCcc--------------------------------
Confidence 2100 0 00 000000000
Q ss_pred CCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhh----------------------------
Q 000200 581 PEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV---------------------------- 632 (1871)
Q Consensus 581 ~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~---------------------------- 632 (1871)
-.+.-|-.. |-=+++..|.+.|=--|-+|.+.+-=.-+..
T Consensus 722 -------yi~~rEWMR-----IcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI 789 (975)
T COG5181 722 -------YIGVREWMR-----ICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAI 789 (975)
T ss_pred -------cCCHHHHHH-----HHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhh
Confidence 001111000 1112333444433333444443331000000
Q ss_pred ---hccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccc--hhhhHHHHHHH
Q 000200 633 ---QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLT 707 (1871)
Q Consensus 633 ---~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~--K~r~~a~e~L~ 707 (1871)
.+.-.+-.+|--.++ .+.-.|..||+.+|..++.+.+.-+.-+...++.+.|-+-|-+.|. -.|..+..+++
T Consensus 790 ~iVae~cgpfsVlP~lm~---dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~ 866 (975)
T COG5181 790 SIVAEYCGPFSVLPTLMS---DYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIR 866 (975)
T ss_pred hhhHhhcCchhhHHHHHh---cccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHH
Confidence 000001112222221 3455788899999999999988777888999999999999999985 46888888887
Q ss_pred HHHHh---hchHhHHHHHHHhhhh---cCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHH
Q 000200 708 TFSEA---VGPGFIFERLYKIMKD---HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIK 781 (1871)
Q Consensus 708 ~~aE~---~~~~~V~~~l~~~~~~---~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~ 781 (1871)
-++=- ++-.=.+=+++..+.- --.|-|+....+.|...-.-.|. .++.+|+-. ||=|....||+.=-.
T Consensus 867 Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~-----g~~m~Yv~q-GLFHPs~~VRk~ywt 940 (975)
T COG5181 867 HLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS-----GAMMKYVQQ-GLFHPSSTVRKRYWT 940 (975)
T ss_pred HHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc-----HHHHHHHHH-hccCchHHHHHHHHH
Confidence 76543 3333334445444432 34788887666665555444454 588899887 699999999999999
Q ss_pred HHHHHHhhhCchhHhhh---hcchHHHHHHHH
Q 000200 782 LLGALHKFVGPDIKGFL---ADVKPALLSALD 810 (1871)
Q Consensus 782 Ll~~ly~~~G~~l~~~l---~dlkpall~~ie 810 (1871)
..-.||.+-.+++-+|+ +|.+|-+..+|+
T Consensus 941 vyn~myv~~~damvp~ypv~~d~n~e~~~~l~ 972 (975)
T COG5181 941 VYNIMYVFDSDAMVPCYPVEEDLNPELARTLH 972 (975)
T ss_pred HHhhhhhcccccccccccCCCCcCHHHHhhhh
Confidence 99999999999999888 677888777664
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0021 Score=79.00 Aligned_cols=367 Identities=17% Similarity=0.184 Sum_probs=233.2
Q ss_pred hhhHHHHHHHHHHHhhchHhHHHHHHHhhhhc---CChhhHHHHHHHHHHHHHHhccCc--cchHhHHHHHhhhcCCCcc
Q 000200 698 TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDH---KNPKVLSEGILWMVSAVEDFGVSH--LKLKDLIDFCKDTGLQSSA 772 (1871)
Q Consensus 698 ~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~---KnPKv~~e~l~wl~~ai~eFG~~~--~~~K~li~~~k~~~l~~sN 772 (1871)
+++......+++.++..+-|... +.+.|-++ -.||.+.-.+++++...+++-..+ .+-++.-.-.++. +.+..
T Consensus 80 ~~~~~~~t~~~~l~~~~~t~q~~-~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~~~g~s~~t~~~~~s~rkm-~~~~~ 157 (516)
T KOG2956|consen 80 VKKQISSTQKMILGAFDPTFQLK-VCELMCDPIHLMSPKSRVVLLEYLTRLLEEYPERGTSPNTKETKAAIRKM-FPWMF 157 (516)
T ss_pred HHhhccchhhhHhhcCCcHHHHH-HHHHHhCHHHhcCCccccchhhhhhcccccccccCCCCCCCcchhhhhhc-ccccc
Confidence 34555556777788877777666 66665433 379999999999999998775432 3444433333332 22211
Q ss_pred HH-----HHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCC-CCCc--c--cc-cccccc-------
Q 000200 773 AA-----TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGT-VVPK--K--TV-RASEST------- 834 (1871)
Q Consensus 773 ~~-----VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~-p~p~--R--~~-r~~~~~------- 834 (1871)
+. +-...-+.++.+....-.+++..++++.|-...-.-+-.+.+..++. |.|. + +. +.+...
T Consensus 158 d~~~~~l~~~~v~s~l~~~~~~n~a~fss~~d~l~p~~rD~~~~~~~~n~~~~~~~~~~a~~e~~~~~~n~~~~~~~~P~ 237 (516)
T KOG2956|consen 158 DPRIENLLTPHVESSLCSLFALNNADFSSLFDLLNPEKRDWAYDSLQSNGIDNGSPSPSAEKERFDSSNNKPSLPLSPPE 237 (516)
T ss_pred CchhhccccHHHHHHHHHHHHHHhhchHhhhhccChhhhhhHHHHHHhhCcCCCCCCchhhhcccccccccccccCCChh
Confidence 11 11122234444544456778888888888777666665555543322 2221 1 00 000000
Q ss_pred -CCC--------------CCCC--------------CCCCCc--cccccCCcHHHHhhcCCC-ChHHHHHHHHHHHHHHH
Q 000200 835 -SSV--------------SSGG--------------SDGLPR--EDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILE 882 (1871)
Q Consensus 835 -~~~--------------~~~~--------------~d~lpr--vDIs~kit~~l~~~l~d~-~WK~RkEaLe~v~~il~ 882 (1871)
+.. +.+. .|.+++ +|= ..+..++++++.+. .=-.|++||-++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~n~~~~~~~l~e~~~~~~~~~~~p~~~~~-~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~ 316 (516)
T KOG2956|consen 238 EEKPGLGSTKVNPEELRLSNETERLSRLEEYSTDDSMDQLTPNSVDQ-SALVADLLKEISGSERASERKEALSELPKMLC 316 (516)
T ss_pred hcccCCCccccCccccccccchhhhhhchhhccCcchhhCCCCCcch-hHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 000 0000 011222 222 22345677777665 88899999999999997
Q ss_pred HcccCCCCCCccchHHHHhhhccc-hhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCch-hHHHHHHHHH
Q 000200 883 EANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK-HMRECTLTVL 960 (1871)
Q Consensus 883 ~ankrI~p~~~geL~~aLk~rl~D-sNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~-~vR~aa~~al 960 (1871)
+..--+=..-|++|+-.+=..|.| .+-+....||++|+.+.++=-..+.-++-..+.-+|++=.|.-. .+|.|+-.|+
T Consensus 317 e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~ 396 (516)
T KOG2956|consen 317 EGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCL 396 (516)
T ss_pred ccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 531001011167888888899988 88888999999999999999999999999999999999999655 6666666667
Q ss_pred HHHHHhccchhhhHHHHHHHhcccCCcchH-HHHHHHHHHHhccCCCC---cchhhhhhHHhhhcCCCCHHHHHHHHHHH
Q 000200 961 DAWLAAVHLDKMVPYVTTALTDAKLGAEGR-KDLFDWLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACI 1036 (1871)
Q Consensus 961 da~~~~~gl~~~~~~i~~~L~~~~~~p~~r-~e~l~wL~~~l~~~~~~---~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L 1036 (1871)
.......++..+. .|...+-+.- +-| .-++..+.+-+.....- ..+..+++.++..-+..+..|||.|==||
T Consensus 397 ~~las~~P~~~I~-~i~~~Ilt~D---~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCL 472 (516)
T KOG2956|consen 397 TTLASHLPLQCIV-NISPLILTAD---EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCL 472 (516)
T ss_pred HHHHhhCchhHHH-HHhhHHhcCc---chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhH
Confidence 7776666665543 3344333211 012 23444566555555431 11223333477788999999999999999
Q ss_pred HHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhcc
Q 000200 1037 VEILRAGGQETIEKNLKDIQGPALALILERIKLNG 1071 (1871)
Q Consensus 1037 ~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~ 1071 (1871)
..++..+|.+.|.+++..|-.+.+..|+=.++.+.
T Consensus 473 Vamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~ 507 (516)
T KOG2956|consen 473 VAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRAS 507 (516)
T ss_pred HHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhh
Confidence 99999999999999999999888888887777764
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=9.7e-05 Score=86.46 Aligned_cols=178 Identities=19% Similarity=0.229 Sum_probs=154.7
Q ss_pred hhhhhhccChHHHHHHHHHHHHhhh-cCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhH
Q 000200 290 FWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1871)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~ 368 (1871)
-...|.|..|-...++|.-+-.|.. ++..-...+.+++=++-+-+..-+-.|...|+.|++.|...+......-...++
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv 172 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLV 172 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999988765 555556678888888888888999999999999999999999999888999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC-hhHHHHhhhhhH
Q 000200 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS-KAAVLKVHKDYV 447 (1871)
Q Consensus 369 ~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~-~~~~~~~~k~~~ 447 (1871)
-.+|-|-.+-|..|||.+..||.++..+ .+...++..+..+++|.||.+|.-...-+.+|..... .+.....+..++
T Consensus 173 ~~Ll~ka~~dnrFvreda~kAL~aMV~~--vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~ 250 (334)
T KOG2933|consen 173 TQLLHKASQDNRFVREDAEKALVAMVNH--VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLS 250 (334)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHH
Confidence 9999999999999999999999999986 7889999999999999999999988888888887653 112223456788
Q ss_pred HHHHhhhCCCCHHHHHHHHHHH
Q 000200 448 PICMECLNDGTPEVRDAAFSVL 469 (1871)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l 469 (1871)
+.+-.-+.|+-|++|++|-..+
T Consensus 251 ~a~~~~~~d~Lp~~~~~a~~~~ 272 (334)
T KOG2933|consen 251 RAAQEQGSDKLPELREAARFVR 272 (334)
T ss_pred HHHHhhhcccccccccchhHHH
Confidence 9999999999999999887443
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.28 Score=63.90 Aligned_cols=579 Identities=16% Similarity=0.176 Sum_probs=324.0
Q ss_pred HHHHHHHHHHHHhhhc--CCCCCCChHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHH
Q 000200 300 SERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLE 373 (1871)
Q Consensus 300 keRkEaLe~l~~l~~~--pKi~~~dy~eL~~~Lkk~l~--DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~lLe 373 (1871)
--|...||.|-=++.. |.--..-|.+++.++-.-.. ..+..|-..|.+|+-.=-.=-+.+|..- ...++..+.|
T Consensus 145 ~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE 224 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence 3455677777666642 33222346666666655543 5555666666666544444445567643 5566777788
Q ss_pred HhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHH-----HHHHhhcCCchhHHHHHHHHHHHHhh---------------
Q 000200 374 KLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNKVPLVRSLTLNWVTFCIET--------------- 433 (1871)
Q Consensus 374 klKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~-----i~~al~~KnP~vk~etl~~L~r~l~~--------------- 433 (1871)
-.--.-..|+.|+..||..++.-++..+.-.+++ .+.+|++-|+.|..++..|-....+.
T Consensus 225 atq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~ 304 (859)
T KOG1241|consen 225 ATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQG 304 (859)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8888888999999999999987644444433333 45789999999999999998855431
Q ss_pred CChhHH---HHhhhhhHHHHHhhhC-------CCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcC
Q 000200 434 SSKAAV---LKVHKDYVPICMECLN-------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (1871)
Q Consensus 434 ~~~~~~---~~~~k~~~~~l~k~l~-------Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~ 503 (1871)
.++... ...++.++|.++++|. |-+=.+-+||..||.-+...+|.+.+...+. -|++.+
T Consensus 305 ~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~--------Fiee~i--- 373 (859)
T KOG1241|consen 305 LPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLP--------FIEENI--- 373 (859)
T ss_pred CCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHH--------HHHHhc---
Confidence 121111 1234678888888882 2223467888899999999999776653332 222222
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q 000200 504 GGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPED 583 (1871)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~ 583 (1871)
T Consensus 374 -------------------------------------------------------------------------------- 373 (859)
T KOG1241|consen 374 -------------------------------------------------------------------------------- 373 (859)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccc--h----hHHHHHHHHHhcCC-C-ccc
Q 000200 584 VEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD--Q----SVEILVRLVCMLPG-W-SEK 655 (1871)
Q Consensus 584 ~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~--~----~~~~lvr~l~~~Pg-w-kes 655 (1871)
.+-||+.|=+|+-.+-..+++.++.. . ..-.++.... +|. | +|+
T Consensus 374 ---------------------------~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdT 425 (859)
T KOG1241|consen 374 ---------------------------QNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS-DPSLWVKDT 425 (859)
T ss_pred ---------------------------CCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc-Cchhhhcch
Confidence 22256666666666665555522210 0 0011222221 121 1 222
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhH
Q 000200 656 NVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 735 (1871)
Q Consensus 656 NfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~ 735 (1871)
--..+.+.++.+.. +++. ..-++-++.-++.++ +-.|+|-
T Consensus 426 aAwtlgrI~d~l~e----------------------~~~n----------------~~~l~~~l~~l~~gL--~DePrva 465 (859)
T KOG1241|consen 426 AAWTLGRIADFLPE----------------------AIIN----------------QELLQSKLSALLEGL--NDEPRVA 465 (859)
T ss_pred HHHHHHHHHhhchh----------------------hccc----------------HhhhhHHHHHHHHHh--hhCchHH
Confidence 22222232222221 0000 111222333344443 4456665
Q ss_pred HHHHHHH---HHHHHHhccCc----cch---HhHHHHHhh-hcCCC-ccHHHHHHHHHHHHHHHhhhCchhHhhhhcchH
Q 000200 736 SEGILWM---VSAVEDFGVSH----LKL---KDLIDFCKD-TGLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKP 803 (1871)
Q Consensus 736 ~e~l~wl---~~ai~eFG~~~----~~~---K~li~~~k~-~~l~~-sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkp 803 (1871)
+-++--+ .+++-+-+... ..- .++|.-+-+ .-..+ ..-+.|++|-..|++|-++.-.+..+.+..+-+
T Consensus 466 ~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l 545 (859)
T KOG1241|consen 466 SNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTL 545 (859)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 5544322 22333444332 111 122222211 11212 345799999999999999999888888888888
Q ss_pred HHHHHHHHHHh--cCCCCCCCCCccc-ccccccc-----C---CCCCCCCCCCCccccccCCcHHHHhhcCC-CChHHHH
Q 000200 804 ALLSALDAEYE--KNPFEGTVVPKKT-VRASEST-----S---SVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRL 871 (1871)
Q Consensus 804 all~~ie~EF~--K~~~~~~p~p~R~-~r~~~~~-----~---~~~~~~~d~lprvDIs~kit~~l~~~l~d-~~WK~Rk 871 (1871)
..+..|+.-.+ .... -.|. .+.=++. + ...+ . .+-.++++|-.-|+.-+++ +.=-+--
T Consensus 546 ~il~kl~q~i~~~~l~~-----~dr~q~~eLQs~Lc~~Lq~i~rk~~--~---~~~~~~d~iM~lflri~~s~~s~~v~e 615 (859)
T KOG1241|consen 546 VILEKLDQTISSQILSL-----ADRAQLNELQSLLCNTLQSIIRKVG--S---DIREVSDQIMGLFLRIFESKRSAVVHE 615 (859)
T ss_pred HHHHHHHHHHHHHhccH-----hhHHHHHHHHHHHHHHHHHHHHHcc--c---cchhHHHHHHHHHHHHHcCCccccchH
Confidence 88877776666 1111 0110 0000000 0 0000 0 2234566777778888887 3344677
Q ss_pred HHHHHHHHHHHHcccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCch
Q 000200 872 ESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK 950 (1871)
Q Consensus 872 EaLe~v~~il~~ankrI~p~~~geL~~aLk~rl-~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~ 950 (1871)
||+=+|..+++...++..--. ..+.+-|-.-| +-.--.|...|..++|.|+.+|+..|-+|+-.++..++.+|+...-
T Consensus 616 ~a~laV~tl~~~Lg~~F~kym-~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~ 694 (859)
T KOG1241|consen 616 EAFLAVSTLAESLGKGFAKYM-PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNL 694 (859)
T ss_pred HHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccc
Confidence 888899888875432221111 22223333333 3344567788999999999999999999999999999999987543
Q ss_pred --hHHHHHHHHHHHHHHhcc--chhhhHHHHHHHhccc---CCc----------chHHHHHHHHHHHhccCCC---Ccch
Q 000200 951 --HMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAK---LGA----------EGRKDLFDWLSKQLTGLSG---FPDA 1010 (1871)
Q Consensus 951 --~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~~~~---~~p----------~~r~e~l~wL~~~l~~~~~---~~~~ 1010 (1871)
+|.-+.+.+-.-++.+.| ++.-++++...|...+ .-| ++|..++.--.--+...+. ...+
T Consensus 695 hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~ 774 (859)
T KOG1241|consen 695 HRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLV 774 (859)
T ss_pred cccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhh
Confidence 344455666666666665 4555555555554211 011 2566666554333333332 2234
Q ss_pred hhhhhHHhhhc------CCCCHHHHHHHHHHHHHHHHhcCHHHH
Q 000200 1011 AHLLKPASIAM------TDKSSDVRKAAEACIVEILRAGGQETI 1048 (1871)
Q Consensus 1011 ~~~~~p~~~~L------~Dr~~dVRkaA~~~L~~~m~~~G~~~~ 1048 (1871)
.+.+.+|++-+ .|-+..+-..|-.++|-+....|.+..
T Consensus 775 ~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~ 818 (859)
T KOG1241|consen 775 QPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVI 818 (859)
T ss_pred hcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchh
Confidence 45666666522 343466677888899999888884433
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.62 Score=63.65 Aligned_cols=649 Identities=15% Similarity=0.159 Sum_probs=371.3
Q ss_pred hcCC-CCCCChHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHhccc-cc-cchhhhHHHHHHHhccCCHHHHHHHHH
Q 000200 314 STKR-IAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTH-FS-GSSRFLLPVLLEKLKEKKPTVAESLTQ 388 (1871)
Q Consensus 314 ~~pK-i~~~dy~eL~~~Lkk~l~--DsNv~vv~~A~~~i~~lA~gLr~~-F~-~y~~~~~~~lLeklKEKK~~V~eAl~~ 388 (1871)
.+|+ +-..-|++....|..++. .+|-.|.-.++.|++.|-.+-... +. .-.+..+-.+|.=.-.+|+.||.+++.
T Consensus 81 ~VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~ 160 (1176)
T KOG1248|consen 81 YVPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQR 160 (1176)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 4666 334458999999999998 999999999999999998885422 43 226778889999999999999999999
Q ss_pred HHHHHHHhcCCChhh-------hHHHHHHHhhcCC-chhHHHHHHHHH---HHHhhCChhHHHHhhhhhHHHHHhhhCCC
Q 000200 389 TLQAMHKAGCLNLVD-------VVEDVKTSVKNKV-PLVRSLTLNWVT---FCIETSSKAAVLKVHKDYVPICMECLNDG 457 (1871)
Q Consensus 389 aLda~~~~~~~~l~~-------~~e~i~~al~~Kn-P~vk~etl~~L~---r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds 457 (1871)
++-++....|+-++. +....+.-++.+- +..-..++++|. ..+.+.|.. +++.++..|+.++.-+
T Consensus 161 ~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~----li~sl~e~lL~i~~~s 236 (1176)
T KOG1248|consen 161 GIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRP----LIKSLCEVLLNITTES 236 (1176)
T ss_pred HHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHH----HHHHHHHHHHhhcccc
Confidence 999998643333221 2222333333222 455555555543 222222333 3589999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhh
Q 000200 458 TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKS 537 (1871)
Q Consensus 458 ~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (1871)
+..|+-.+++||..+.+---. .|+...-.++-.++-..+ |+.. .+- ....=
T Consensus 237 ~v~v~~~~~q~l~~lf~~~~~--------~l~a~~~a~lL~al~~l~-------ps~~---------D~~-----~t~~W 287 (1176)
T KOG1248|consen 237 PVLVLLEVLQCLHSLFKKHPT--------ALAAELNARLLTALMTLS-------PSEN---------DDL-----LTVAW 287 (1176)
T ss_pred hHHHHHHHHHHHHHHHhcCCC--------cchHHHHHHHHHHHHHhC-------CCcc---------chH-----HHHHH
Confidence 999999999999888754332 334333334444332211 0000 000 00000
Q ss_pred hhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHH
Q 000200 538 AASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKE 617 (1871)
Q Consensus 538 ~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~ 617 (1871)
...+.. +... =..+..|-+...+-.+|+ -+.+ +..+.-++
T Consensus 288 ~~v~~~---------------------------------~~~~-----la~~q~~~~~~~~~~~~~-~~~t-~~~s~~~e 327 (1176)
T KOG1248|consen 288 LKVLNE---------------------------------AHDI-----LATLQEEKALQALPRLFS-LFFT-ILESLIEE 327 (1176)
T ss_pred HHHHHH---------------------------------HHHH-----HHHhCHHHHHHhhhhhhh-HHHH-HHhcccHH
Confidence 000000 0000 001112223333333332 2344 77777888
Q ss_pred HHHHHHHHHHHHHhhhc--cchhHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccc
Q 000200 618 RLEAISSLRQQVEAVQN--LDQSVEI-LVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA 694 (1871)
Q Consensus 618 RL~a~e~l~~~v~~~~~--~~~~~~~-lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlg 694 (1871)
++++.-.....|-.... .+.-|.- +-.++..+ | --|...+|.|+..+.+.++..+....--++.++++.=+
T Consensus 328 ~~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~~k--f----~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~ 401 (1176)
T KOG1248|consen 328 LVQAASQSLKEILKESVTVIDALCSKQLHSLLDYK--F----HAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRA 401 (1176)
T ss_pred HHHHHHHHHHHHhcccCcccHHHHHHHHHHHHcch--H----HHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhc
Confidence 88876665544433111 1111222 22233221 1 13666778888888888777777777778888887433
Q ss_pred c--chhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchH----hHHHHHhhhcC
Q 000200 695 D--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLK----DLIDFCKDTGL 768 (1871)
Q Consensus 695 D--~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K----~li~~~k~~~l 768 (1871)
+ .=.+....+++-+..-+.||+-|+.-+==. . ++-..+..=.||--.|+++-. +-++- .++..+++ +
T Consensus 402 ~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLn---l-~~~s~~~~RsWLLPvLR~~i~-~A~La~F~~~ivpla~s--l 474 (1176)
T KOG1248|consen 402 SPDFFHKLQLDQCIGSAVRAMGPERVLTILPLN---L-HAESLSFTRSWLLPVLRDYII-GASLAFFTEYIVPLAMS--L 474 (1176)
T ss_pred CCCCccHHHHHHHHHHHHHhhCHHHHHHHcchh---c-cccccccchhHhHHHHHHhhc-cCcHHHHHHHHHHHHHH--H
Confidence 3 335668888888888899998877644222 2 666777788899999987654 23433 23333332 2
Q ss_pred CCccHHHHHHHHHHHHHHHhhhCchhHhh--------------hhcchHHHHHHHHH--------------HHhcCC---
Q 000200 769 QSSAAATRNATIKLLGALHKFVGPDIKGF--------------LADVKPALLSALDA--------------EYEKNP--- 817 (1871)
Q Consensus 769 ~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~--------------l~dlkpall~~ie~--------------EF~K~~--- 817 (1871)
.+.-+.+..+....- +|.-++..||.. |.|+=|.+...|.. -.+.+.
T Consensus 475 ~~K~~~l~~~~~~~~--~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~elr~~Ic~sL~~Lv~~n~~~~ 552 (1176)
T KOG1248|consen 475 QLKAKKLKEAGSQVS--LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRPELRETICNSLRMLVEQNKPSS 552 (1176)
T ss_pred HHHHHhhhhccCcHH--HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcchHhHHHHHHHHHHHHHcCCCcc
Confidence 222223333332222 444444444432 22332333332222 222221
Q ss_pred -----------------------CCCCCCCcccc-----------c------ccccc--------CCCCCCCCCCCCccc
Q 000200 818 -----------------------FEGTVVPKKTV-----------R------ASEST--------SSVSSGGSDGLPRED 849 (1871)
Q Consensus 818 -----------------------~~~~p~p~R~~-----------r------~~~~~--------~~~~~~~~d~lprvD 849 (1871)
+.++++..|.. | ...+. +..+++.+ .-
T Consensus 553 ~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~-----~s 627 (1176)
T KOG1248|consen 553 DAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLD-----ES 627 (1176)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccch-----hh
Confidence 11112212110 0 00000 00000000 11
Q ss_pred cccCCcH----------------------HHHhhcCCC-ChHHHHHHHHHHHHHHHH-cccCCCCCCccchHHHHhhhcc
Q 000200 850 ISGKFTP----------------------TLVKSLESP-DWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLY 905 (1871)
Q Consensus 850 Is~kit~----------------------~l~~~l~d~-~WK~RkEaLe~v~~il~~-ankrI~p~~~geL~~aLk~rl~ 905 (1871)
++++++- ++....+.+ +=+++|-+.+=|++++.- ..........-++...|..-+.
T Consensus 628 ~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~q 707 (1176)
T KOG1248|consen 628 VASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQ 707 (1176)
T ss_pred hhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHh
Confidence 1111111 122333333 677778887777777742 0000111113567888888888
Q ss_pred chhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHH--h---cc-------chhhh
Q 000200 906 DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA--A---VH-------LDKMV 973 (1871)
Q Consensus 906 DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~--~---~g-------l~~~~ 973 (1871)
++-.-...-++.|+..|-...+..+....--++|-++-.++|-...-|+-+-+||-.+.. . -| +.+|+
T Consensus 708 s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl 787 (1176)
T KOG1248|consen 708 SSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFL 787 (1176)
T ss_pred ccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHH
Confidence 888888899999999999999988888877788888778899999999999999988772 1 23 34455
Q ss_pred HHHHHHHhcccCCcchHHHHHHHHHHHhcc---CCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHH
Q 000200 974 PYVTTALTDAKLGAEGRKDLFDWLSKQLTG---LSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050 (1871)
Q Consensus 974 ~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~---~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~ 1050 (1871)
..|...|.+.. +..+.-.+--+..-+.+ +-+...+..++.-+..+|..++++||++|=..+-.++..+.+..+.+
T Consensus 788 ~~Isagl~gd~--~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~ 865 (1176)
T KOG1248|consen 788 SIISAGLVGDS--TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP 865 (1176)
T ss_pred HHHHhhhcccH--HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh
Confidence 55666555332 33444422222222322 32233455666778889999999999999999999999999998888
Q ss_pred HhhccCc
Q 000200 1051 NLKDIQG 1057 (1871)
Q Consensus 1051 ~~~~Lk~ 1057 (1871)
+...|=|
T Consensus 866 ~~~~LL~ 872 (1176)
T KOG1248|consen 866 HLEELLP 872 (1176)
T ss_pred hHHHHHH
Confidence 8755543
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.03 Score=70.42 Aligned_cols=177 Identities=21% Similarity=0.232 Sum_probs=127.1
Q ss_pred cccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHH---HHhhhccchhHhHHHHHHHHHHHHHH
Q 000200 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG---GLRGRLYDSNKNLVMATLITLGAVAS 924 (1871)
Q Consensus 848 vDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~---aLk~rl~DsNk~lv~~al~ii~~lA~ 924 (1871)
-+|.+.|||- +.++-=|+--.++.=|..|+..+.-.|.+ -|-++ .|-..|+--||-+-..|-+..|.|+.
T Consensus 687 ~~ilP~ltPI----Lrnkh~Kv~~nti~lvg~I~~~~peyi~~---rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 687 SGILPSLTPI----LRNKHQKVVANTIALVGTICMNSPEYIGV---REWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred hhccccccHh----hhhhhHHHhhhHHHHHHHHHhcCcccCCH---HHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 3566667774 44566777778888888888755433433 23333 34455567899999999999999999
Q ss_pred hcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000200 925 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1871)
Q Consensus 925 amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~ 1004 (1871)
|.||. -++-.++..|+-+.-+.|.+..-++...++.||.=.++|.+..-...|. .++...+|.-+.=.|.-+
T Consensus 760 aiGPq------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe--~nVQnGvLkam~fmFeyi 831 (975)
T COG5181 760 AIGPQ------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPE--ANVQNGVLKAMCFMFEYI 831 (975)
T ss_pred hcCHH------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCch--hHHHHhHHHHHHHHHHHH
Confidence 99974 3566778888888899999999999999999999999997655555453 335566665444333322
Q ss_pred CC-CcchhhhhhHHh-hhcCCCCHHHHHHHHHHHHHH
Q 000200 1005 SG-FPDAAHLLKPAS-IAMTDKSSDVRKAAEACIVEI 1039 (1871)
Q Consensus 1005 ~~-~~~~~~~~~p~~-~~L~Dr~~dVRkaA~~~L~~~ 1039 (1871)
.. ..+....+.|++ ..|+||++--|.-|..++-.+
T Consensus 832 g~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl 868 (975)
T COG5181 832 GQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHL 868 (975)
T ss_pred HHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHH
Confidence 22 346677777855 499999999999988876544
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.26 Score=64.17 Aligned_cols=321 Identities=16% Similarity=0.246 Sum_probs=198.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcC-------------CCCccc
Q 000200 615 WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT-------------KFPKKC 681 (1871)
Q Consensus 615 WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~-------------~fs~~~ 681 (1871)
=-.|+.|.=.|+..+...++. ..-+..=||+... -|+-=||=..++..|..-.-+.+ ......
T Consensus 51 ~~~R~~AGL~LKN~L~akd~~-~k~~~~qRWl~l~---~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~ 126 (859)
T KOG1241|consen 51 DVARMAAGLQLKNSLTAKDPE-RKQQYQQRWLQLP---AEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQ 126 (859)
T ss_pred HHHHHHHhHHHhhhhccCCHH-HHHHHHHHHHcCC---HHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhh
Confidence 345777777787777664332 2345666777432 23444555555554441111111 122222
Q ss_pred hhhhccchhhccccch---hhhHHHHHHHHHHHhhchHhHHHHH-------HHhh-hhcCChhhHHHHHHHHHHHHHHhc
Q 000200 682 VVLCLLGISERVADIK---TRAHAMKCLTTFSEAVGPGFIFERL-------YKIM-KDHKNPKVLSEGILWMVSAVEDFG 750 (1871)
Q Consensus 682 ~~~~l~~lveKlgD~K---~r~~a~e~L~~~aE~~~~~~V~~~l-------~~~~-~~~KnPKv~~e~l~wl~~ai~eFG 750 (1871)
-.-++.-++..+|+.- +|+.+.+++--+||...|+.+..+. ..|+ +.--+-.||-.+++.|-..++=-+
T Consensus 127 wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~ 206 (859)
T KOG1241|consen 127 WPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTK 206 (859)
T ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHH
Confidence 3336667788888853 6899999999999999999444432 2232 234467889999998888885333
Q ss_pred cC---ccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHH--------HhhhCchh-----HhhhhcchHHHHHHH-----
Q 000200 751 VS---HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGAL--------HKFVGPDI-----KGFLADVKPALLSAL----- 809 (1871)
Q Consensus 751 ~~---~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~l--------y~~~G~~l-----~~~l~dlkpall~~i----- 809 (1871)
.. -.+.-.+...++++ -++.+..||.+|..+|+.+ -.|||++| ..+.++-...-++.|
T Consensus 207 ~nF~~E~ern~iMqvvcEa-tq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWst 285 (859)
T KOG1241|consen 207 ANFNNEMERNYIMQVVCEA-TQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWST 285 (859)
T ss_pred HhhccHhhhceeeeeeeec-ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 11 12334566667887 8999999999999999864 35677643 345555555555544
Q ss_pred --HHHHh------cCCCCCCC-CCccccccc---------------cccCC-------CCCC----------CCCCCCcc
Q 000200 810 --DAEYE------KNPFEGTV-VPKKTVRAS---------------ESTSS-------VSSG----------GSDGLPRE 848 (1871)
Q Consensus 810 --e~EF~------K~~~~~~p-~p~R~~r~~---------------~~~~~-------~~~~----------~~d~lprv 848 (1871)
|+|++ .....+-| .-.++.|.. ++... .++| +||.+|
T Consensus 286 iceEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~-- 363 (859)
T KOG1241|consen 286 ICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP-- 363 (859)
T ss_pred HHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh--
Confidence 34444 22222222 223344431 11100 0010 233333
Q ss_pred ccccCCcHHHHh-hcCCCChHHHHHHHHHHHHHHHH-cccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhc
Q 000200 849 DISGKFTPTLVK-SLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAM 926 (1871)
Q Consensus 849 DIs~kit~~l~~-~l~d~~WK~RkEaLe~v~~il~~-ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~am 926 (1871)
-+= .|++ ++.++||+.|-.|.=+...|++. .-.+++|-. -+.++.+-.-+.|++..+..+|.-++|+|+..+
T Consensus 364 ----~Vl-~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV-~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l 437 (859)
T KOG1241|consen 364 ----HVL-PFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIV-IQALPSIINLMSDPSLWVKDTAAWTLGRIADFL 437 (859)
T ss_pred ----hhH-HHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHH-hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhc
Confidence 222 4777 69999999999999999999974 235677754 677788888889999999999999999999988
Q ss_pred ChhHH--hhhhhhhHHHHHHhccC
Q 000200 927 GPAVE--KSSKGVLSDILKCLGDN 948 (1871)
Q Consensus 927 G~~~~--k~~k~l~~~il~~l~D~ 948 (1871)
-..+- .|....++..++.|.|.
T Consensus 438 ~e~~~n~~~l~~~l~~l~~gL~De 461 (859)
T KOG1241|consen 438 PEAIINQELLQSKLSALLEGLNDE 461 (859)
T ss_pred hhhcccHhhhhHHHHHHHHHhhhC
Confidence 74432 34555566666666664
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.03 Score=74.62 Aligned_cols=382 Identities=20% Similarity=0.196 Sum_probs=247.2
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChh--
Q 000200 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV-- 402 (1871)
Q Consensus 325 eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~-- 402 (1871)
++.........|.+.+|=..+++=++.+|+++.+ ..-...++|....-..|-+.+||+++.+++..+..+ +.-+
T Consensus 237 elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l--~~~~~d 312 (759)
T KOG0211|consen 237 ELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDL--LDDDDD 312 (759)
T ss_pred HHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHh--cCCchh
Confidence 4455556666799999999999999999999998 334667778888888999999999999999999997 3333
Q ss_pred ---hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChh
Q 000200 403 ---DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1871)
Q Consensus 403 ---~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~ 479 (1871)
.+.+.+..+.+.+...+|.-+..|+...-...++... --...++....+.|...++|-+.+.=...+-..+.+.
T Consensus 313 ~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~---~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~ 389 (759)
T KOG0211|consen 313 VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSAT---RTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS 389 (759)
T ss_pred hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccC---cccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcc
Confidence 3456667777888888888777776665544333111 1235788888999999999988776555555444422
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCC
Q 000200 480 PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGP 559 (1871)
Q Consensus 480 ~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~ 559 (1871)
.+ .+--+..-.-.+++++.... . -++...++...+..|..+
T Consensus 390 ~~---~~i~~~~ilp~~~~lv~d~~---------------------~------~vr~a~a~~~~~~~p~~~--------- 430 (759)
T KOG0211|consen 390 CY---PNIPDSSILPEVQVLVLDNA---------------------L------HVRSALASVITGLSPILP--------- 430 (759)
T ss_pred cc---cccchhhhhHHHHHHHhccc---------------------c------hHHHHHhccccccCccCC---------
Confidence 11 11111111223444443210 0 000000000001111100
Q ss_pred CCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHH--HHhhhccch
Q 000200 560 VKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQ--VEAVQNLDQ 637 (1871)
Q Consensus 560 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~--v~~~~~~~~ 637 (1871)
+ ++....+-+-.+.++.+-.=..|++.++-+... +......+.
T Consensus 431 -----------k------------------------~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~ 475 (759)
T KOG0211|consen 431 -----------K------------------------ERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIST 475 (759)
T ss_pred -----------c------------------------CcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchh
Confidence 0 000112233444555666666777777644322 222222333
Q ss_pred hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcC-CC-CccchhhhccchhhccccchhhhHHHHHHHHHHHhhch
Q 000200 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT-KF-PKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGP 715 (1871)
Q Consensus 638 ~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~-~f-s~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~ 715 (1871)
..+.++..+...-+|. |-.|..+.++.+..++...+ .| -.....+|..++.+++-. +|+.+...|..++|.+|.
T Consensus 476 ~s~slLp~i~el~~d~--~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~--Ir~~aa~~l~~l~~~~G~ 551 (759)
T KOG0211|consen 476 VSNSLLPAIVELAEDL--LWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYS--IREAAARNLPALVETFGS 551 (759)
T ss_pred hhhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHH--HHHHHHHHhHHHHHHhCc
Confidence 4566666555433344 88999999999999887654 33 344556677776665544 477888999999999998
Q ss_pred HhHHHHHHHhh---hhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCc
Q 000200 716 GFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 792 (1871)
Q Consensus 716 ~~V~~~l~~~~---~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~ 792 (1871)
+|-...+.... ..+.|-++|.-++.-+..+..-||-. +--+.++.++... ..+++|+||-.+.+.|-.+-.++-.
T Consensus 552 ~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e-i~~~~Llp~~~~l-~~D~vanVR~nvak~L~~i~~~L~~ 629 (759)
T KOG0211|consen 552 EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE-ITCEDLLPVFLDL-VKDPVANVRINVAKHLPKILKLLDE 629 (759)
T ss_pred chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH-HHHHHHhHHHHHh-ccCCchhhhhhHHHHHHHHHhhcch
Confidence 88766554432 34667899999999999888888864 7789999999997 9999999999999988666665554
Q ss_pred h
Q 000200 793 D 793 (1871)
Q Consensus 793 ~ 793 (1871)
.
T Consensus 630 ~ 630 (759)
T KOG0211|consen 630 S 630 (759)
T ss_pred H
Confidence 3
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0024 Score=76.57 Aligned_cols=160 Identities=17% Similarity=0.127 Sum_probs=120.6
Q ss_pred hhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000200 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1871)
Q Consensus 288 ~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~ 367 (1871)
+.+...+.+.....|.+++..|..+- ..+++..+.+.+.|.|..+-..|+.+++.|...=+. ..-.
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~---------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a 91 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRG---------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNV 91 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcC---------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHH
Confidence 46788899999999999999987653 245667777778899999999999999997532110 2345
Q ss_pred HHHHHHH-hccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhh
Q 000200 368 LPVLLEK-LKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1871)
Q Consensus 368 ~~~lLek-lKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~ 446 (1871)
++.+..- ++|+=+.||.++..+|--+...+.......++.+..++.+++|.||..+..=|. .... ...
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg----~~~~-------~~a 160 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALS----VIND-------EAA 160 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHh----ccCC-------HHH
Confidence 6666655 689999999988888866543322234556777788899999999976655543 2221 235
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000200 447 VPICMECLNDGTPEVRDAAFSVLAAI 472 (1871)
Q Consensus 447 ~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1871)
++.|+.+|+|.+++||..|..+||.+
T Consensus 161 i~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 161 IPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 78999999999999999999999988
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.13 Score=69.20 Aligned_cols=177 Identities=13% Similarity=0.094 Sum_probs=128.7
Q ss_pred cHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhh
Q 000200 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1871)
Q Consensus 855 t~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~ 934 (1871)
...|.+.+.|+|=-+|-=||..+-.|.. |..+..+...+++.+.|.|.-|-..|+-|+..+-.--. ... ..
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir~-------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-elv-~~ 177 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIRV-------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-QLF-YQ 177 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCc-------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-ccc-cc
Confidence 4568889999999999999999865543 33456788999999999999999999999988854322 111 12
Q ss_pred hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc--chhhhHHHHHHHhc-ccCCcchHHHHHHHHHHHhccCCCCcchh
Q 000200 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTD-AKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1011 (1871)
Q Consensus 935 k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~~-~~~~p~~r~e~l~wL~~~l~~~~~~~~~~ 1011 (1871)
..+++.+.+.|.|+.+.|...|+.+|..+.+..+ ++...+.+...+.. +..|++++..+|+.|.+.-+.. ..+..
T Consensus 178 ~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~--~~e~~ 255 (746)
T PTZ00429 178 QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD--KESAE 255 (746)
T ss_pred cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC--cHHHH
Confidence 3467778888999999999999999999987653 22223333333321 2347899999999997754322 23455
Q ss_pred hhhhHHhhhcCCCCHHHHHHHHHHHHHHHHh
Q 000200 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1871)
Q Consensus 1012 ~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1871)
.++.-+..+|..+|+.|-=+|-.++-.+...
T Consensus 256 ~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 256 TLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 6666778889999998888887777655443
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.039 Score=67.31 Aligned_cols=189 Identities=16% Similarity=0.116 Sum_probs=131.0
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCC---CCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc--cccccc
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRI---APGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR--THFSGS 363 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi---~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr--~~F~~y 363 (1871)
++.+.+.+++=+.|.++|+.+..++...-+ ..+.+..|+..+.+.|.=..-.=..+|+++++.++--|| ..-...
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 678888999999999999999887643322 235688999999999972223667899999999999988 333344
Q ss_pred hhhhHHHHHHHhccCCH--HHHHHHHHHHHHHHHhcCCChhhh------HHHHHHH--hh--cC--------CchhHHHH
Q 000200 364 SRFLLPVLLEKLKEKKP--TVAESLTQTLQAMHKAGCLNLVDV------VEDVKTS--VK--NK--------VPLVRSLT 423 (1871)
Q Consensus 364 ~~~~~~~lLeklKEKK~--~V~eAl~~aLda~~~~~~~~l~~~------~e~i~~a--l~--~K--------nP~vk~et 423 (1871)
...+.|.|..-++|.-. .+|.++..||-.+.-.+|...+++ ++.|... .+ .+ +|.+...+
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 56677777777777643 455666666665544344444433 3322211 11 11 24565544
Q ss_pred HHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000200 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1871)
Q Consensus 424 l~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1871)
+.=-.-.+...+...+...+...+|.++.+|+-.+.+||-||.++|+-|.-...
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 443344555566555666678889999999999999999999999999887665
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.011 Score=59.94 Aligned_cols=54 Identities=30% Similarity=0.413 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc
Q 000200 915 TLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1871)
Q Consensus 915 al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g 968 (1871)
++-.++.+|.|+|+.+.+|...++|+|+.+|.|+-.-||-+|-++|-.+...++
T Consensus 6 gli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~ 59 (97)
T PF12755_consen 6 GLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR 59 (97)
T ss_pred HHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 566788999999999999999999999999999999999999999998877664
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=5 Score=55.39 Aligned_cols=629 Identities=17% Similarity=0.175 Sum_probs=326.0
Q ss_pred CCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHH---------HHHH
Q 000200 318 IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAE---------SLTQ 388 (1871)
Q Consensus 318 i~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~e---------Al~~ 388 (1871)
+..+..-.++..|-.+.+-+++.|+..+++|+..|-++.-.. -.-.+..-+|..+-+-++++.+ ++.+
T Consensus 217 ~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~---l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~ 293 (1176)
T KOG1248|consen 217 FPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTA---LAAELNARLLTALMTLSPSENDDLLTVAWLKVLNE 293 (1176)
T ss_pred CCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCc---chHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHH
Confidence 444678889999999999999999999999999998887652 1333334455555555555443 2233
Q ss_pred HHHHHHHhcC-C---ChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHH
Q 000200 389 TLQAMHKAGC-L---NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDA 464 (1871)
Q Consensus 389 aLda~~~~~~-~---~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~a 464 (1871)
+.+.++...- . .+..+..-+.+.+..-++++=+++.+-+.+.++.+.. ... ..+-..+-..|+=+...|-+-
T Consensus 294 ~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-~~~---~~c~~~~~~~l~~kf~~~~~~ 369 (1176)
T KOG1248|consen 294 AHDILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT-VID---ALCSKQLHSLLDYKFHAVWRF 369 (1176)
T ss_pred HHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-ccH---HHHHHHHHHHHcchHHHHHHH
Confidence 3333322100 0 0123334455667788888888888888888877654 111 122335778888888888888
Q ss_pred HHHHHHHHHHHhChh---HHHHHhhcCCHHH-------HHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhh
Q 000200 465 AFSVLAAIAKSVGMR---PLERSIEKLDDVR-------RNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFV 534 (1871)
Q Consensus 465 A~~~l~~lmk~~Ge~---~l~~~l~~Ld~~k-------k~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1871)
.+..+..+.-.+|+. .|.+.|+.|+..+ +..|.+++..+- .+-+ |+
T Consensus 370 ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV------------~AmG-----Pe------- 425 (1176)
T KOG1248|consen 370 ILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAV------------RAMG-----PE------- 425 (1176)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHH------------HhhC-----HH-------
Confidence 888888888888863 3666666666533 345555554320 0000 00
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhcc
Q 000200 535 RKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAV 614 (1871)
Q Consensus 535 ~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~ 614 (1871)
.... ..|-. +....++ +-..+++--|++--
T Consensus 426 -----~vL~------~lpLn-----------------------------l~~~s~~----------~~RsWLLPvLR~~i 455 (1176)
T KOG1248|consen 426 -----RVLT------ILPLN-----------------------------LHAESLS----------FTRSWLLPVLRDYI 455 (1176)
T ss_pred -----HHHH------Hcchh-----------------------------ccccccc----------cchhHhHHHHHHhh
Confidence 0000 00000 0000000 01111111111111
Q ss_pred -------HHHHHHH-HHHHHHHHHhhhccch---hHH-HHHHHHHhcCCCccchHHHHH---HHHHHHHHHHHhcCCCCc
Q 000200 615 -------WKERLEA-ISSLRQQVEAVQNLDQ---SVE-ILVRLVCMLPGWSEKNVQVQQ---QVIEVINYLAATATKFPK 679 (1871)
Q Consensus 615 -------WK~RL~a-~e~l~~~v~~~~~~~~---~~~-~lvr~l~~~PgwkesNfqV~~---~~leil~~la~~~~~fs~ 679 (1871)
|.+..-. .+.+...+..+.+.+. ..| +..++|.-.|||++.-.-+.. -.+-++....... .+.+
T Consensus 456 ~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~-~elr 534 (1176)
T KOG1248|consen 456 IGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKR-PELR 534 (1176)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcc-hHhH
Confidence 1111111 1112222222221111 112 345566778999875443332 2333344333322 3555
Q ss_pred cchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHH-HHhccCccchHh
Q 000200 680 KCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAV-EDFGVSHLKLKD 758 (1871)
Q Consensus 680 ~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai-~eFG~~~~~~K~ 758 (1871)
..+...+.-+++..-.++--....+.++.+|--.- -++=.+|......-+ ++..-+..||-.+. +.|-...=++-.
T Consensus 535 ~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL--~~lfn~ytq~~~~~~-~~l~~~~~~L~~i~~~~~~~t~~dv~~ 611 (1176)
T KOG1248|consen 535 ETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFL--PRLFNVYTQTVAAGR-KILASRSTVLEIIRVDYFTVTPTDVVG 611 (1176)
T ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHH--HHHHHHhcCCCcccc-ccHHHHHHHHHHHHHHHhhcccHHHHH
Confidence 66666666666654222222223334444432211 122233333211112 55666666666666 445443323322
Q ss_pred HHHHHhhhcCCCcc-HHH----HHHHHHHHHHHHhhhCchhHhhhhcchHH-HHHHHHHHHhcCCCCCCCCCcccccccc
Q 000200 759 LIDFCKDTGLQSSA-AAT----RNATIKLLGALHKFVGPDIKGFLADVKPA-LLSALDAEYEKNPFEGTVVPKKTVRASE 832 (1871)
Q Consensus 759 li~~~k~~~l~~sN-~~V----R~aAi~Ll~~ly~~~G~~l~~~l~dlkpa-ll~~ie~EF~K~~~~~~p~p~R~~r~~~ 832 (1871)
.+.-.-.. +.+.+ -+| +-+=+.++..+-.+. ++.+. .+-+++.+|++....+ .+.|.-|-=.
T Consensus 612 ~l~~s~~e-~as~~~~s~~~~~~~slLdl~~~~a~~~---------~e~~vs~l~~v~~~~e~~~~~~--vQkK~yrlL~ 679 (1176)
T KOG1248|consen 612 SLKDSAGE-LASDLDESVASFKTLSLLDLLIALAPVQ---------TESQVSKLFTVDPEFENSSSTK--VQKKAYRLLE 679 (1176)
T ss_pred HHHHHHHh-HhccchhhhhhHHHHHHHHHHHhhhccc---------cchhHHHHHHhhHHhhccccHH--HHHHHHHHHH
Confidence 22111111 22222 222 222233333333222 22221 2227888888874311 1222211100
Q ss_pred cc-CCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHH-HHhh---hccch
Q 000200 833 ST-SSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG-GLRG---RLYDS 907 (1871)
Q Consensus 833 ~~-~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~-aLk~---rl~Ds 907 (1871)
+. ...++.+ +-.+-..-|-..+.+.+.+..-=.|+++|..+..|+...+ +..-+++. .+.. -++|-
T Consensus 680 ~l~~~~s~~~----~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~-----~e~~~~i~k~I~EvIL~~Ke~ 750 (1176)
T KOG1248|consen 680 ELSSSPSGEG----LVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS-----AEHCDLIPKLIPEVILSLKEV 750 (1176)
T ss_pred HHhcCCchhh----HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHHhcccc
Confidence 00 0001100 0000011122345566777788889999999999997542 21123322 2222 22899
Q ss_pred hHhHHHHHHHHHHHHHH---hcChhHHh---hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc-c------chhhhH
Q 000200 908 NKNLVMATLITLGAVAS---AMGPAVEK---SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-H------LDKMVP 974 (1871)
Q Consensus 908 Nk~lv~~al~ii~~lA~---amG~~~~k---~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~-g------l~~~~~ 974 (1871)
|..--..|..||-.|.. ..-.+-++ -..-+++-|-..|......++.+-+-++..++..- + +..+++
T Consensus 751 n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~ 830 (1176)
T KOG1248|consen 751 NVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLIS 830 (1176)
T ss_pred cHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 99888998888877762 22222122 12223333444455667777777677777665432 1 345566
Q ss_pred HHHHHHhcccCCcchHHHHHHHHHHHhccCCCC---cchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 000200 975 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKN 1051 (1871)
Q Consensus 975 ~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~---~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~ 1051 (1871)
++.-+|.+. +++.+.-+.+|+......++.. +....++.-++.-+.|.+..+|++.-.+|..+++..|++.+...
T Consensus 831 ~V~~~L~s~--sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~ 908 (1176)
T KOG1248|consen 831 MVCLYLASN--SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESF 908 (1176)
T ss_pred HHHHHHhcC--CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhh
Confidence 777778754 6999999999999888877752 22333444466677888999999999999999999999999988
Q ss_pred hhc
Q 000200 1052 LKD 1054 (1871)
Q Consensus 1052 ~~~ 1054 (1871)
+..
T Consensus 909 ~pe 911 (1176)
T KOG1248|consen 909 LPE 911 (1176)
T ss_pred CHH
Confidence 763
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.01 Score=60.07 Aligned_cols=91 Identities=20% Similarity=0.249 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHH
Q 000200 345 AIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTL 424 (1871)
Q Consensus 345 A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl 424 (1871)
++-++..+|-||++....|...++|++|..|.|.-..||-++-++|-.+.+. + |.+.+
T Consensus 6 gli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~-~---------------------~~~~l 63 (97)
T PF12755_consen 6 GLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV-A---------------------RGEIL 63 (97)
T ss_pred HHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-H---------------------HHHHH
Confidence 5678899999999999999999999999999999999999998888888764 1 11111
Q ss_pred HHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Q 000200 425 NWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1871)
Q Consensus 425 ~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk 474 (1871)
.+ ...+...+.+.+.|+++.||.+| +.|..++|
T Consensus 64 ~~----------------f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 64 PY----------------FNEIFDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HH----------------HHHHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 11 24456778899999999999998 45655553
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.018 Score=68.05 Aligned_cols=179 Identities=18% Similarity=0.253 Sum_probs=136.8
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhh
Q 000200 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1871)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~ 936 (1871)
..+++|+|++|-.--+||--+..+.. =++.+-.+.+-+++-++-+-++.-+..|...|.-+++.|.++++..+......
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~-fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~ 170 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSE-FHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD 170 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999986664 23444444567888888889999999999999999999999999999999999
Q ss_pred hhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcc----hhh
Q 000200 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD----AAH 1012 (1871)
Q Consensus 937 l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~----~~~ 1012 (1871)
++-.++.+=++.|..||++|..+|.+++.++.-..+++.+..++.+.+ |..|...-.-..++...+...+- ...
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~n--~r~r~~a~~~~~~~v~rl~v~~~~~~~~~d 248 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHSN--PRVRAKAALCFSRCVIRLGVLPVLLQGSCD 248 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhc--hhhhhhhhccccccceeccccchhhHhHHH
Confidence 999999999999999999999999999999999999999999998653 44343332222222222211111 112
Q ss_pred hhhHHhhhcCCCCHHHHHHHHHHHHH
Q 000200 1013 LLKPASIAMTDKSSDVRKAAEACIVE 1038 (1871)
Q Consensus 1013 ~~~p~~~~L~Dr~~dVRkaA~~~L~~ 1038 (1871)
++..+-..+-|+-+++|++|.-++..
T Consensus 249 l~~a~~~~~~d~Lp~~~~~a~~~~~~ 274 (334)
T KOG2933|consen 249 LSRAAQEQGSDKLPELREAARFVRLE 274 (334)
T ss_pred HHHHHHhhhcccccccccchhHHHHh
Confidence 22334457889999999988866543
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.23 E-value=5.9 Score=50.68 Aligned_cols=151 Identities=14% Similarity=0.113 Sum_probs=106.0
Q ss_pred cccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHH----
Q 000200 336 DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVK---- 409 (1871)
Q Consensus 336 DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~---- 409 (1871)
..-..|-..|++|+-.=.--.+.+|..- ...++....|-.--.-..+..|+-.||.-++.-++..+.-.+|-.+
T Consensus 189 et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt 268 (858)
T COG5215 189 ETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALT 268 (858)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566667777766555556777632 5556777788888888999999999999887654555555565433
Q ss_pred -HHhhcCCchhHHHHHHHHHHHHhhC----------ChhHHH------HhhhhhHHHHHhhhCCCC-------HHHHHHH
Q 000200 410 -TSVKNKVPLVRSLTLNWVTFCIETS----------SKAAVL------KVHKDYVPICMECLNDGT-------PEVRDAA 465 (1871)
Q Consensus 410 -~al~~KnP~vk~etl~~L~r~l~~~----------~~~~~~------~~~k~~~~~l~k~l~Ds~-------~~VR~aA 465 (1871)
.+|++.|-+|+.++..|-....+.. +..+.. ..+++++|.++++|+..+ =.+-.+|
T Consensus 269 ~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA 348 (858)
T COG5215 269 GRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAA 348 (858)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhH
Confidence 4678999999999999885444321 100100 124778999999984322 2467899
Q ss_pred HHHHHHHHHHhChhHHHHHhh
Q 000200 466 FSVLAAIAKSVGMRPLERSIE 486 (1871)
Q Consensus 466 ~~~l~~lmk~~Ge~~l~~~l~ 486 (1871)
..||--+....|...|++.++
T Consensus 349 ~sCLqlfaq~~gd~i~~pVl~ 369 (858)
T COG5215 349 SSCLQLFAQLKGDKIMRPVLG 369 (858)
T ss_pred HHHHHHHHHHhhhHhHHHHHH
Confidence 999999999999998888664
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=96.17 E-value=1.3 Score=57.87 Aligned_cols=102 Identities=22% Similarity=0.298 Sum_probs=79.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHhcCCChh----hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHh-hhh
Q 000200 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV----DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKD 445 (1871)
Q Consensus 371 lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~----~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~-~k~ 445 (1871)
+++.|.+.+...++.+..+|+.++.. ..+. ++.+.+..+|.|.+|.||.-++.=|.|+..+... ...-+ -..
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~--~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSA--LSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-AAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH-HHHHhcCcc
Confidence 77777777777778888888888875 3444 4556777899999999999999999999865432 11111 145
Q ss_pred hHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000200 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1871)
Q Consensus 446 ~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1871)
+++.++.|+.|.+.+|.+.|..+|..+.+.
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASH 149 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999888765
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0067 Score=48.29 Aligned_cols=30 Identities=50% Similarity=0.717 Sum_probs=27.1
Q ss_pred hHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000200 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1871)
Q Consensus 446 ~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1871)
++|.++++++|++++||.+|..+|+.+.++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.11 E-value=5.6 Score=56.03 Aligned_cols=480 Identities=19% Similarity=0.309 Sum_probs=276.8
Q ss_pred HHHhhhhcCChhhHHHHHHHHHHHHHHhccC---ccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhh
Q 000200 722 LYKIMKDHKNPKVLSEGILWMVSAVEDFGVS---HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (1871)
Q Consensus 722 l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~---~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l 798 (1871)
.+......-||-.|.+.+.||-+.+.-.|-. .+..+.+..---.. |+..|-=+...|-.=+|-+|-.-|.+++.-|
T Consensus 822 ~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~-Lsd~dEf~QDvAsrGlglVYelgd~~~k~~L 900 (1702)
T KOG0915|consen 822 LLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHL-LSDNDEFSQDVASRGLGLVYELGDSSLKKSL 900 (1702)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHH-hcccHHHHHHHHhcCceEEEecCCchhHHHH
Confidence 3333356779999999999999999999922 34555555333444 9999999999999999999987776666433
Q ss_pred hcchHHHHHHHHHHHhcCCCCCCCCCcccccccccc-CCCCCCCC-----CCCC-ccccccCCcHHH-Hhhc----CCCC
Q 000200 799 ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST-SSVSSGGS-----DGLP-REDISGKFTPTL-VKSL----ESPD 866 (1871)
Q Consensus 799 ~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~-~~~~~~~~-----d~lp-rvDIs~kit~~l-~~~l----~d~~ 866 (1871)
=..|+.++-. .|-....-..-|.-. +... +..+.||. |+.- .-|+ + -|++ |+=| ...-
T Consensus 901 ---V~sL~~tl~~--Gkr~~~~vs~eTelF--q~G~Lg~Tp~Gg~isTYKELc~LASdl-~--qPdLVYKFM~LAnh~A~ 970 (1702)
T KOG0915|consen 901 ---VDSLVNTLTG--GKRKAIKVSEETELF--QEGTLGKTPDGGKISTYKELCNLASDL-G--QPDLVYKFMQLANHNAT 970 (1702)
T ss_pred ---HHHHHHHHhc--cccccceeccchhcc--cCCcCCCCCCCCcchHHHHHHHHHhhc-C--ChHHHHHHHHHhhhhch
Confidence 1234444433 111000000000000 0000 11111110 0000 0000 1 1333 3333 3445
Q ss_pred hHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhc
Q 000200 867 WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG 946 (1871)
Q Consensus 867 WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~ 946 (1871)
|.-|+=|-=-+.+|..+|.-.++|.. +.|++-|-.==-|-+++|+..-..|-..|-+--..-.++|..-++-.+|-.|+
T Consensus 971 wnSk~GaAfGf~~i~~~a~~kl~p~l-~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt 1049 (1702)
T KOG0915|consen 971 WNSKKGAAFGFGAIAKQAGEKLEPYL-KKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLT 1049 (1702)
T ss_pred hhcccchhhchHHHHHHHHHhhhhHH-HHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999988899986 88887774433799999998888888888887777889999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHh-------cccCCcchHHHHHHHHHHHhccC----C---C---Ccc
Q 000200 947 DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-------DAKLGAEGRKDLFDWLSKQLTGL----S---G---FPD 1009 (1871)
Q Consensus 947 D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~-------~~~~~p~~r~e~l~wL~~~l~~~----~---~---~~~ 1009 (1871)
++-=-||+|+--||.-....=..+.+.+.|.+.+. +-+. -.| ++-+-.++.+.+. - . ..+
T Consensus 1050 ~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKE--sVR-~aa~~~~~~lsKl~vr~~d~~~~~~~~~ 1126 (1702)
T KOG0915|consen 1050 SKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKE--SVR-EAADKAARALSKLCVRICDVTNGAKGKE 1126 (1702)
T ss_pred chhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHhhhcccCCcccHHH
Confidence 99999999999999988888777777776555443 1110 112 2222222222221 1 1 123
Q ss_pred hhhhhhHHh--hhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 000200 1010 AAHLLKPAS--IAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKV 1087 (1871)
Q Consensus 1010 ~~~~~~p~~--~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~~~~~~~~~~~~~~~ 1087 (1871)
....+.|.+ .+++.+-.+||+.+-..+--+.++.|- .+.+++.+| |--.++..
T Consensus 1127 ~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~-~lkP~~~~L-------Ip~ll~~~----------------- 1181 (1702)
T KOG0915|consen 1127 ALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK-ELKPHFPKL-------IPLLLNAY----------------- 1181 (1702)
T ss_pred HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchh-hhcchhhHH-------HHHHHHHc-----------------
Confidence 344444522 255677777777766655555555554 112222211 11111111
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChHHHHhhhhccccccCCChhHHHHHHHHH
Q 000200 1088 PKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDM 1167 (1871)
Q Consensus 1088 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~~~~~~kw~f~~pr~e~ve~L~~q~ 1167 (1871)
..|+.|.
T Consensus 1182 -------------------------------------------------------------------------s~lE~~v 1188 (1702)
T KOG0915|consen 1182 -------------------------------------------------------------------------SELEPQV 1188 (1702)
T ss_pred -------------------------------------------------------------------------cccchHH
Confidence 1122222
Q ss_pred HHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCC
Q 000200 1168 MKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGY 1247 (1871)
Q Consensus 1168 ~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y 1247 (1871)
-.+++--+ ......|||.+...+.... ..++-++..+.|+ |- +||. |++..+.+.++..=.
T Consensus 1189 LnYls~r~--------~~~e~ealDt~R~s~akss-pmmeTi~~ci~~i-----D~--~vLe---elip~l~el~R~sVg 1249 (1702)
T KOG0915|consen 1189 LNYLSLRL--------INIETEALDTLRASAAKSS-PMMETINKCINYI-----DI--SVLE---ELIPRLTELVRGSVG 1249 (1702)
T ss_pred HHHHHHhh--------hhhHHHHHHHHHHhhhcCC-cHHHHHHHHHHhh-----hH--HHHH---HHHHHHHHHHhccCC
Confidence 22222111 2223344444433322111 1222233333332 11 1221 233333344444334
Q ss_pred cccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhhccCc-cchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCcc
Q 000200 1248 SLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA-TKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEI 1326 (1871)
Q Consensus 1248 ~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~-skvf~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v 1326 (1871)
-=|..-++.|+-.|+.++|-- .-|+ .|++.-++-|++-+|+-.|.-|-.-+|++. +++-
T Consensus 1250 l~Tkvg~A~fI~~L~~r~~~e-----------------mtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~---k~Ss 1309 (1702)
T KOG0915|consen 1250 LGTKVGCASFISLLVQRLGSE-----------------MTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLA---KFSS 1309 (1702)
T ss_pred CCcchhHHHHHHHHHHHhccc-----------------cCcchhHHHHHHhhccccccHHHHHHHHHHHHHHH---hcCC
Confidence 446677888999999888752 1222 367777788999999999999999999997 4432
Q ss_pred cCcc-chH-HHHHHHhccCCh--hHHHHHHH
Q 000200 1327 SGQL-KSL-QIVASLTAERDG--EIRKAALN 1353 (1871)
Q Consensus 1327 ~~~~-Kal-~~ia~~i~drD~--~VR~AALn 1353 (1871)
+.+. |-+ +.++.+.+++++ .++.+-+.
T Consensus 1310 ~dq~qKLie~~l~~~l~k~es~~siscatis 1340 (1702)
T KOG0915|consen 1310 PDQMQKLIETLLADLLGKDESLKSISCATIS 1340 (1702)
T ss_pred hHHHHHHHHHHHHHHhccCCCccchhHHHHH
Confidence 2232 333 788888898888 66666554
|
|
| >PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.024 Score=61.23 Aligned_cols=113 Identities=29% Similarity=0.503 Sum_probs=84.6
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhh
Q 000200 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGV 937 (1871)
Q Consensus 860 ~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l 937 (1871)
..+.+.||-. +-.|++..|.. +..-.|.+++|++||...|.+++..||.++..+..=.|..|... .+-|
T Consensus 16 ~~~~~~Dw~~-------~l~icD~i~~~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~f 86 (140)
T PF00790_consen 16 ESLPSPDWSL-------ILEICDLINSS--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEF 86 (140)
T ss_dssp TTSSS--HHH-------HHHHHHHHHTS--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHH
T ss_pred cCCCCCCHHH-------HHHHHHHHHcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHH
Confidence 3456678853 23344333333 44448999999999999999999999999999999999999765 4567
Q ss_pred hHHHHHHhccCchh----HHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000200 938 LSDILKCLGDNKKH----MRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1871)
Q Consensus 938 ~~~il~~l~D~K~~----vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1871)
+-.+...+.+++.. ||+-+++.+..|....+-++-+..|.+...
T Consensus 87 l~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~~y~ 134 (140)
T PF00790_consen 87 LDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQDTYK 134 (140)
T ss_dssp HHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHHHHHH
T ss_pred HHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHHHHHH
Confidence 77777777766554 899999999999999976666666655543
|
Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A .... |
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.072 Score=57.87 Aligned_cols=110 Identities=18% Similarity=0.339 Sum_probs=85.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1871)
+...||-.=. .||+.-|.. +++.-|.+++|++||...|.+++..||.++..++.=.|+.|-.. .+-|+.
T Consensus 13 l~~~dw~~il-------~icD~I~~~--~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~ 83 (144)
T cd03568 13 LTSENWGLIL-------DVCDKVKSD--ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ 83 (144)
T ss_pred CCCcCHHHHH-------HHHHHHhcC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 4557895433 334332322 44457999999999999999999999999999999999999865 677888
Q ss_pred HHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 000200 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1871)
Q Consensus 940 ~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1871)
.+...+.+ .-..|++-++..+..|.....-+.=+..|.+..
T Consensus 84 eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y 125 (144)
T cd03568 84 ELKKLINDRVHPTVKEKLREVVKQWADEFKNDPSLSLMSDLY 125 (144)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 88888888 678999999999999998886554444444433
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=95.76 E-value=6.9 Score=51.30 Aligned_cols=387 Identities=15% Similarity=0.164 Sum_probs=225.4
Q ss_pred cCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHH
Q 000200 729 HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSA 808 (1871)
Q Consensus 729 ~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ 808 (1871)
..++.....++..|..++..+-...+ ...+.+++.. ||.|.||.||.-+.+.++-+-..-...+..
T Consensus 49 ~~~~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~-gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~------------ 114 (503)
T PF10508_consen 49 TSNREQVELICDILKRLLSALSPDSL-LPQYQPFLQR-GLTHPSPKVRRLALKQLGRIARHSEGAAQL------------ 114 (503)
T ss_pred hcChHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCCHHHHHH------------
Confidence 33778888888888888887766555 5667778877 499999999999988754433211100000
Q ss_pred HHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCC
Q 000200 809 LDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRI 888 (1871)
Q Consensus 809 ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI 888 (1871)
+. ...+-+.++.-+.+++=.+-++|...+..|.. ++..
T Consensus 115 ------------------------------------~~----~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~--~~~~ 152 (503)
T PF10508_consen 115 ------------------------------------LV----DNELLPLIIQCLRDPDLSVAKAAIKALKKLAS--HPEG 152 (503)
T ss_pred ------------------------------------hc----CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC--Cchh
Confidence 00 01133456777899999999999999999984 2211
Q ss_pred CCCC-ccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh-hhhhhHHHHHHhccCchhHHHHHHHHHHHHHHh
Q 000200 889 QPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (1871)
Q Consensus 889 ~p~~-~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~-~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~ 966 (1871)
-... -+++...|+.-+..+|-.+...++.++..|+..--..++.. -.++++.++..|.+.-..|+-.+++.+...+..
T Consensus 153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET 232 (503)
T ss_pred HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence 1111 12337778887866677777778888877765544444433 236999999999999999999999999988875
Q ss_pred c-cchh-----hhHHHHHHHhcccCCc-c------hHHHHHHHHHHHhccCCCCcc----hhhhhhHHhhhcCCCCHHHH
Q 000200 967 V-HLDK-----MVPYVTTALTDAKLGA-E------GRKDLFDWLSKQLTGLSGFPD----AAHLLKPASIAMTDKSSDVR 1029 (1871)
Q Consensus 967 ~-gl~~-----~~~~i~~~L~~~~~~p-~------~r~e~l~wL~~~l~~~~~~~~----~~~~~~p~~~~L~Dr~~dVR 1029 (1871)
- |+.- +++-+...+.+...+| . ++-..++-++ .. .+.. ...++.-++.+++..+...|
T Consensus 233 ~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la----~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~ 307 (503)
T PF10508_consen 233 PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA----RV-SPQEVLELYPAFLERLFSMLESQDPTIR 307 (503)
T ss_pred hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH----hc-ChHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence 4 3322 2333555555444455 1 2222222222 11 1111 23334446667789999999
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccC
Q 000200 1030 KAAEACIVEILRAG-GQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVI 1108 (1871)
Q Consensus 1030 kaA~~~L~~~m~~~-G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1108 (1871)
-.|-+.+|.+-... |...+. .+-.+.-...+..+.+..+.
T Consensus 308 ~~A~dtlg~igst~~G~~~L~---~~~~~~~~~~l~~~~~~~~~------------------------------------ 348 (503)
T PF10508_consen 308 EVAFDTLGQIGSTVEGKQLLL---QKQGPAMKHVLKAIGDAIKS------------------------------------ 348 (503)
T ss_pred HHHHHHHHHHhCCHHHHHHHH---hhcchHHHHHHHHHHHHhcC------------------------------------
Confidence 99999999775433 444441 11111122222222221110
Q ss_pred CCCCCCCCccccchhhhhhhhhhcccCCCChHHHHh-hhhcc-c--cccCCChhHHHHHHHHHHHhhhHH----HHHhhc
Q 000200 1109 PTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRER-MVVRR-F--KFEDPRIEQIQELENDMMKYFRED----LHRRLL 1180 (1871)
Q Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~~-~~~~k-w--~f~~pr~e~ve~L~~q~~~~~~~~----l~~~lf 1180 (1871)
++ -+-|.| +..+. | ..++...+++-.+...+-..++.. ++-.+.
T Consensus 349 ---~~-------------------------~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~ 400 (503)
T PF10508_consen 349 ---GS-------------------------TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLL 400 (503)
T ss_pred ---Cc-------------------------hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 00 000100 00000 0 111122333433333343333322 444555
Q ss_pred ccCHHH-HHHHHHHHHHhcCCC-hhhhhHhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHH
Q 000200 1181 STDFKK-QVDGLEMLQKALPSI-RKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1243 (1871)
Q Consensus 1181 ~~d~k~-~l~al~~l~~~l~~~-~~~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~ 1243 (1871)
...|-+ |++|+..|....... .-..+.+.-=++.|++=|-.|+|..+.....++++.+.....
T Consensus 401 ~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 401 KQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred cCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 677776 899999988776543 112233344466787778899999999999999887665444
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.066 Score=60.14 Aligned_cols=98 Identities=19% Similarity=0.222 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCH
Q 000200 380 PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459 (1871)
Q Consensus 380 ~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~ 459 (1871)
+.||.-+.-++--++..+..-++..++.+...|.+++|.||..++.-|++.+.+.- .+.-..++..++.++.|+++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~----ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM----IKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc----eeehhhhhHHHHHHHcCCCH
Confidence 45666666666555544233466688899999999999999999999999987531 12213345778899999999
Q ss_pred HHHHHHHHHHHHHHHHhChhHH
Q 000200 460 EVRDAAFSVLAAIAKSVGMRPL 481 (1871)
Q Consensus 460 ~VR~aA~~~l~~lmk~~Ge~~l 481 (1871)
+||+.|..+|..+.+..+...+
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i 99 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNII 99 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHH
Confidence 9999999999999988554444
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.02 Score=51.44 Aligned_cols=55 Identities=22% Similarity=0.191 Sum_probs=43.8
Q ss_pred chhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000200 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1871)
Q Consensus 417 P~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1871)
|.||..++.-|.++.. .......+++..++|.+..+|+|++++||.+|+.+||.|
T Consensus 1 p~vR~~A~~aLg~l~~-~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAE-GCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTT-TTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhc-ccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6788888888877333 333444566788999999999999999999999999864
|
... |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.033 Score=54.33 Aligned_cols=86 Identities=19% Similarity=0.363 Sum_probs=68.1
Q ss_pred hhHHHHhh-CCChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCcccCccchHHHH
Q 000200 1258 LPCLVEKS-GHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIV 1336 (1871)
Q Consensus 1258 lP~Lv~K~-Gd~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v~~~~Kal~~i 1336 (1871)
||.|+..+ .|+...||.. .++.++.+ ...++.++|.+.++++|+.+|..++..||.+ | ..++++.+
T Consensus 1 i~~L~~~l~~~~~~~vr~~---a~~~L~~~-~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~-----~~~~~~~L 67 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAE---AARALGEL-GDPEAIPALIELLKDEDPMVRRAAARALGRI----G-----DPEAIPAL 67 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHH---HHHHHHCC-THHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----H-----HHHTHHHH
T ss_pred CHHHHHHHhcCCCHHHHHH---HHHHHHHc-CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----C-----CHHHHHHH
Confidence 68888888 8888888865 55555544 3458999999999999999999999999975 3 35677777
Q ss_pred HHHhcc-CChhHHHHHHHHHH
Q 000200 1337 ASLTAE-RDGEIRKAALNTLA 1356 (1871)
Q Consensus 1337 a~~i~d-rD~~VR~AALn~l~ 1356 (1871)
.+++.+ .|..||.+|+.+|+
T Consensus 68 ~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 68 IKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHhhcC
Confidence 776654 67778999999886
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.28 Score=60.81 Aligned_cols=298 Identities=17% Similarity=0.158 Sum_probs=158.1
Q ss_pred cCcCchhHHHHHHHHHHHHhhhcCCCCchhhhh----------hhhchhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhh
Q 000200 20 LLHKNWKVRNEANIDLAALCDSITDPKDNRIRE----------LGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR 89 (1871)
Q Consensus 20 l~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~----------~~~l~kk~v~DsN~~aqek~leal~~~l~~a~~~~~~ 89 (1871)
..|-.=|+|..|.--+..+.+++..-.-.-|+. -+.|+-=.++|.|+-...-+++.+.+++..+.. +-.
T Consensus 5 ~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~-fls 83 (728)
T KOG4535|consen 5 MRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQ-FLS 83 (728)
T ss_pred hhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHH-HHH
Confidence 345556899999888877776542211111111 022333469999999999999988877765422 111
Q ss_pred hhhHHHHHHHHhhhcC----ChhhHHHHHHHHHHHHhhcchhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccC
Q 000200 90 YAKEVCDAIAAKCLTG----RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP 165 (1871)
Q Consensus 90 ~~~~~~~~lveK~L~~----r~~tk~~a~e~~l~~vE~e~~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~~vv~ 165 (1871)
.+.+ +-.-.|+- -+-..--+..|+++..|.| -.|-++..||.++..++.+--...+.
T Consensus 84 ~a~~----~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e---------------~~~~~~tq~~kcla~lv~~~p~~~l~ 144 (728)
T KOG4535|consen 84 VAED----TSDHAFTPFSVMIACSIRELHRCLLLALVAE---------------SSSQTVTQIIKCLANLVSNAPYDRLK 144 (728)
T ss_pred HHhc----cCCcCCCchHHHHHHHHHHHHHHHHHHHHHh---------------cCchhHHHHHHHHHHHHhcCchHHHH
Confidence 1000 00001110 0000112344555444443 34778888888888888765443332
Q ss_pred ---hhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHH-
Q 000200 166 ---PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ- 241 (1871)
Q Consensus 166 ---~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q- 241 (1871)
+-.+.-.++++..|+|++||-.+..+.+.|- |-..+ +..+|. -| +.+...|.....-
T Consensus 145 ~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v---~t~~~-------~pei~~-~~--------~~~~s~~n~~~~h~ 205 (728)
T KOG4535|consen 145 LSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIV---STHAP-------LPEVQL-LL--------QQPCSSSNSATPHL 205 (728)
T ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH---hcCCC-------CHHHHH-Hh--------cCCCccccccCCCC
Confidence 2345677899999999999999988766553 31110 111221 11 1111111110000
Q ss_pred ---hHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhh------hhhcc--ChHHHHHHHHHHH
Q 000200 242 ---DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWE------GVKAT--KWSERKDAVAELT 310 (1871)
Q Consensus 242 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~------~l~s~--KWkeRkEaLe~l~ 310 (1871)
+-=.+- . .|+...+-..+++.+...|--++.++--..-+|+.|=|. .+++. -=--|.|+++-|.
T Consensus 206 s~~~~~~~l---~--~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~ 280 (728)
T KOG4535|consen 206 SPPDWWKKL---P--AGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLT 280 (728)
T ss_pred CChHHHHhc---C--CCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHH
Confidence 000000 0 001000001111222223444555554334444433221 11110 1236889998887
Q ss_pred HhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccc
Q 000200 311 KLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361 (1871)
Q Consensus 311 ~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~ 361 (1871)
.+...--+..+-+.+|.|++.+.+.|.--.+-.-+++|+..+..+++....
T Consensus 281 ~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~ 331 (728)
T KOG4535|consen 281 LLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYK 331 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcC
Confidence 776555555566789999999999999999999999999999999984443
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.1 Score=53.23 Aligned_cols=107 Identities=16% Similarity=0.118 Sum_probs=83.6
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc---CCC-hh-hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHH
Q 000200 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---CLN-LV-DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (1871)
Q Consensus 366 ~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~---~~~-l~-~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~ 440 (1871)
.+++.+++.+++....++..+..||-.++... +.. +. ++++.+...|.+.+|.++..++..|.+.....+. ...
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~-~~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED-NKL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH-HHH
Confidence 47899999999999999999989988887530 000 22 6678888999999999999999988888765432 222
Q ss_pred Hhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 441 KVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 441 ~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
.+. ..+++.+.+++++.+.++|+.+..+|..+.
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 233 348999999999999999999999998763
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.085 Score=56.54 Aligned_cols=110 Identities=22% Similarity=0.371 Sum_probs=83.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1871)
+.+.||-.=. .|++.-|.. +.+-.|.+++|++||...|.+++..||.++..+..=.|++|... .+-|+.
T Consensus 13 l~~~dw~~~l-------~icD~i~~~--~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~ 83 (133)
T smart00288 13 LLEEDWELIL-------EICDLINST--PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLN 83 (133)
T ss_pred CCCcCHHHHH-------HHHHHHhCC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHH
Confidence 4567886433 334333333 44447999999999999999999999999999999999999765 556888
Q ss_pred HHHHHhccCch--hHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 000200 940 DILKCLGDNKK--HMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1871)
Q Consensus 940 ~il~~l~D~K~--~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1871)
.+...+.+... .|++.++..+..|.....-++=++.|.+..
T Consensus 84 ~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~~~~~i~~~y 126 (133)
T smart00288 84 ELVKLIKPKYPLPLVKKRILELIQEWADAFKNDPDLSQIVDVY 126 (133)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCCCchHHHHHH
Confidence 77777776544 299999999999999886555555555444
|
Unpublished observations. Domain of unknown function. |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.25 E-value=2.1 Score=52.63 Aligned_cols=262 Identities=19% Similarity=0.186 Sum_probs=168.1
Q ss_pred hHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHH-hhhCchhH
Q 000200 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH-KFVGPDIK 795 (1871)
Q Consensus 717 ~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly-~~~G~~l~ 795 (1871)
..+..+++.+ .++++-++..+... +.+ +..+..+.-+.+. +.+.++.||..|+..||.+- ....+.+.
T Consensus 43 ~~~~~~~~~l-~~~~~~vr~~aa~~----l~~-----~~~~~av~~l~~~-l~d~~~~vr~~a~~aLg~~~~~~a~~~li 111 (335)
T COG1413 43 EAADELLKLL-EDEDLLVRLSAAVA----LGE-----LGSEEAVPLLREL-LSDEDPRVRDAAADALGELGDPEAVPPLV 111 (335)
T ss_pred hhHHHHHHHH-cCCCHHHHHHHHHH----Hhh-----hchHHHHHHHHHH-hcCCCHHHHHHHHHHHHccCChhHHHHHH
Confidence 3445555553 45566666655544 223 3344666666776 88889999999988776654 33445555
Q ss_pred hhhh-cchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhc------------
Q 000200 796 GFLA-DVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL------------ 862 (1871)
Q Consensus 796 ~~l~-dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l------------ 862 (1871)
.+++ |.+.-.....-.-+.++..+.. + ..+++.+
T Consensus 112 ~~l~~d~~~~vR~~aa~aL~~~~~~~a--------------------------------~-~~l~~~l~~~~~~~a~~~~ 158 (335)
T COG1413 112 ELLENDENEGVRAAAARALGKLGDERA--------------------------------L-DPLLEALQDEDSGSAAAAL 158 (335)
T ss_pred HHHHcCCcHhHHHHHHHHHHhcCchhh--------------------------------h-HHHHHHhccchhhhhhhhc
Confidence 5554 4544444444444444322110 0 0122222
Q ss_pred CCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHH
Q 000200 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 942 (1871)
Q Consensus 863 ~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il 942 (1871)
.+..|..|..+++.+..+-. .+.+..|+..+.|.+..+...|..-++.+...+ ..+.+.+.
T Consensus 159 ~~~~~~~r~~a~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~ 219 (335)
T COG1413 159 DAALLDVRAAAAEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLV 219 (335)
T ss_pred cchHHHHHHHHHHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHH
Confidence 33558899999998876553 567788899999999977777777777666555 56778889
Q ss_pred HHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcC
Q 000200 943 KCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMT 1022 (1871)
Q Consensus 943 ~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~ 1022 (1871)
..++|....+|.++..++... |...-.+.+...+.+. ++..+.....|+. .........++..-+.
T Consensus 220 ~~~~~~~~~vr~~~~~~l~~~----~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~ 285 (335)
T COG1413 220 KALSDESLEVRKAALLALGEI----GDEEAVDALAKALEDE--DVILALLAAAALG--------ALDLAEAALPLLLLLI 285 (335)
T ss_pred HHhcCCCHHHHHHHHHHhccc----CcchhHHHHHHHHhcc--chHHHHHHHHHhc--------ccCchhhHHHHHHHhh
Confidence 999999999999999888665 4455556667777743 3455555555554 1123344556777889
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhcc
Q 000200 1023 DKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1871)
Q Consensus 1023 Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~L 1055 (1871)
|.+..+|..+...++.+-..............-
T Consensus 286 ~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~ 318 (335)
T COG1413 286 DEANAVRLEAALALGQIGQEKAVAALLLALEDG 318 (335)
T ss_pred cchhhHHHHHHHHHHhhcccchHHHHHHHhcCC
Confidence 999999999998888776665555555554443
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.04 Score=56.14 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=83.4
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCc-cchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhh
Q 000200 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1871)
Q Consensus 856 ~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~-geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~ 934 (1871)
+.+++-+.+.+|..|..|+..+..+.... +....... .+.++.|..-|.|.|..++..|+.+++.|+..-......+.
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 45778889999999999999999988521 11111111 25677888888999999999999999999986544444444
Q ss_pred -hhhhHHHHHHhccCchhHHHHHHHHHHHHH
Q 000200 935 -KGVLSDILKCLGDNKKHMRECTLTVLDAWL 964 (1871)
Q Consensus 935 -k~l~~~il~~l~D~K~~vR~aa~~alda~~ 964 (1871)
..+++.+++.+.+....+|..+..+|...+
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 458999999999999999999999887653
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.1 Score=55.96 Aligned_cols=108 Identities=22% Similarity=0.407 Sum_probs=82.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1871)
+.+.||..=.|=-| +|+ .. +.+-.|.+++|++||+..|.+++..||.++..+..=.|++|... .+-++-
T Consensus 13 ~~~~D~~~il~icd----~I~---~~--~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~ 83 (133)
T cd03561 13 LEEPDWALNLELCD----LIN---LK--PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLL 83 (133)
T ss_pred cCCccHHHHHHHHH----HHh---CC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHH
Confidence 45688875433333 332 11 44458999999999999999999999999999999999999764 336777
Q ss_pred HHHHHhccC---chhHHHHHHHHHHHHHHhccch-hhhHHHHH
Q 000200 940 DILKCLGDN---KKHMRECTLTVLDAWLAAVHLD-KMVPYVTT 978 (1871)
Q Consensus 940 ~il~~l~D~---K~~vR~aa~~alda~~~~~gl~-~~~~~i~~ 978 (1871)
.++..+..+ ...||.-+++.+..|....+-+ .-++.+.+
T Consensus 84 ~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~~~~~~~~~~ 126 (133)
T cd03561 84 ELVKIAKNSPKYDPKVREKALELILAWSESFGGHSEDLPGIED 126 (133)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCccchHHHH
Confidence 788777764 5689999999999999988754 43444443
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.14 Score=49.92 Aligned_cols=86 Identities=23% Similarity=0.368 Sum_probs=68.1
Q ss_pred HHHHHHHh-ccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhh
Q 000200 368 LPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1871)
Q Consensus 368 ~~~lLekl-KEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~ 446 (1871)
+|.+++.+ +|+-+.||..+..+|- . ..-.+.++.+...+++++|.||.++...|.+. +. ...
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~---~---~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~~-------~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG---E---LGDPEAIPALIELLKDEDPMVRRAAARALGRI----GD-------PEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH---C---CTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----HH-------HHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH---H---cCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----CC-------HHH
Confidence 57899999 9999999987666655 2 34567889999999999999999999888854 11 345
Q ss_pred HHHHHhhhCC-CCHHHHHHHHHHHH
Q 000200 447 VPICMECLND-GTPEVRDAAFSVLA 470 (1871)
Q Consensus 447 ~~~l~k~l~D-s~~~VR~aA~~~l~ 470 (1871)
++.+.+.+.| .+..||.+|..+||
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 7888887755 56778999999986
|
|
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.14 Score=55.46 Aligned_cols=111 Identities=20% Similarity=0.339 Sum_probs=85.3
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000200 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1871)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1871)
.+.+.||-.=.|=-|.|. + . +.+-.|.+++|++||...|.+++..||.++..+..-.|..|-.. .+-|+
T Consensus 16 ~l~~~dw~~ileicD~In-----~-~---~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl 86 (142)
T cd03569 16 LLGEPDLASILEICDMIR-----S-K---DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFM 86 (142)
T ss_pred ccCccCHHHHHHHHHHHh-----C-C---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHH
Confidence 346778875544444442 1 1 23337999999999999999999999999999999999999764 66788
Q ss_pred HHHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 000200 939 SDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1871)
Q Consensus 939 ~~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1871)
..+...+.+ ..+.|++-++..+..|....+-++=++.|.++.
T Consensus 87 ~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y 129 (142)
T cd03569 87 DELKDLIKTTKNEEVRQKILELIQAWALAFRNKPQLKYVVDTY 129 (142)
T ss_pred HHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 888887764 455799999999999999887665555555444
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.31 Score=61.07 Aligned_cols=193 Identities=17% Similarity=0.170 Sum_probs=137.6
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHcccCCCC-CCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhh
Q 000200 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1871)
Q Consensus 858 l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p-~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~ 936 (1871)
+.....+..|+.|--..--+-++..+ +.+.. ..+|+++..|..|..|.|-.+...|+.+++..|++|-.++.+|...
T Consensus 222 ~~ss~ts~~~~~ritd~Af~ael~~~--~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~ 299 (533)
T KOG2032|consen 222 LLSSITSEKENGRITDIAFFAELKRP--KELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT 299 (533)
T ss_pred cccccchhcccchHHHHHHHHHHhCc--ccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH
Confidence 33456778999999888888888852 34442 3369999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHH---HHHHHh--cccCCcchHHHHHHHHHHHhccCCCC---
Q 000200 937 VLSDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPY---VTTALT--DAKLGAEGRKDLFDWLSKQLTGLSGF--- 1007 (1871)
Q Consensus 937 l~~~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~---i~~~L~--~~~~~p~~r~e~l~wL~~~l~~~~~~--- 1007 (1871)
++-+|+..|=| ....|.-.++.||....+....+.+-++ ++.-+. -...+++.|...+--.. .|......
T Consensus 300 ~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg-~L~~l~g~~~e 378 (533)
T KOG2032|consen 300 QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFG-ALAKLAGGGWE 378 (533)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHH-HHHHHcCCCch
Confidence 99999888876 3467888888888888877765555442 222221 01235777877654332 33333221
Q ss_pred ----cchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Q 000200 1008 ----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (1871)
Q Consensus 1008 ----~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~ 1053 (1871)
...+.-..|++-.|+|+++-|-+|-...+-+....++-+.......
T Consensus 379 ~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q 428 (533)
T KOG2032|consen 379 EFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQ 428 (533)
T ss_pred hhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHh
Confidence 1234456789999999999998887776655555555555554444
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.27 Score=60.08 Aligned_cols=184 Identities=17% Similarity=0.153 Sum_probs=116.0
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHc--ccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcC--hhHHh
Q 000200 857 TLVKSLESPDWKVRLESIEAVNKILEEA--NKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG--PAVEK 932 (1871)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~a--nkrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG--~~~~k 932 (1871)
+.+..+.+|+=+.|.+||+.+..++..- ..+|... +.+|..++.+.++-.+..=...|+++++.++.-+| .....
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~-~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDR-RETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 4678889999999999999999999631 1123322 36778888887755555667899999999999988 55566
Q ss_pred hhhhhhHHHHHHhccCch--hHHHHHHHHHHHHH--Hhccchhhh---HHHH-----HHHh-cccC-------Ccch-HH
Q 000200 933 SSKGVLSDILKCLGDNKK--HMRECTLTVLDAWL--AAVHLDKMV---PYVT-----TALT-DAKL-------GAEG-RK 991 (1871)
Q Consensus 933 ~~k~l~~~il~~l~D~K~--~vR~aa~~alda~~--~~~gl~~~~---~~i~-----~~L~-~~~~-------~p~~-r~ 991 (1871)
....+.|.+...+.|.-. .+|.+++.||-... ...+.+.+. +.|- ..++ +++. ++.+ =.
T Consensus 126 i~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 126 IFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 677788888888888654 57788887776443 333444433 2211 1222 1110 1122 23
Q ss_pred HHHHH--HHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 992 DLFDW--LSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 992 e~l~w--L~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
-+-.| |...++...-.......+..+...|+..+.+||.+|-++|.-+..
T Consensus 206 AL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 206 ALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 33344 443332210011123334447778899999999999999976644
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.84 Score=57.41 Aligned_cols=211 Identities=15% Similarity=0.112 Sum_probs=149.6
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCC-CChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~-~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~ 367 (1871)
.|.+.+.+.+|++|.-..--+.++...+.+.+ |..++++..|..+..|.|-.+-..|+.|++..|.|+......|...+
T Consensus 221 q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ 300 (533)
T KOG2032|consen 221 QLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQ 300 (533)
T ss_pred hcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHH
Confidence 34456889999999987777777766555554 78999999999999999999999999999999999998899999999
Q ss_pred HHHHHHHhccCC-HHHHHHHHHHHHHHHHhcCCChh-------hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCCh---
Q 000200 368 LPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCLNLV-------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK--- 436 (1871)
Q Consensus 368 ~~~lLeklKEKK-~~V~eAl~~aLda~~~~~~~~l~-------~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~--- 436 (1871)
+-.|+--+=|-- ..|.--+..||.-+... .+.. ++...+.+..+.-++++|...+..+.-...-..+
T Consensus 301 ldaii~gL~D~~~~~V~leam~~Lt~v~~~--~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e 378 (533)
T KOG2032|consen 301 LDAIIRGLYDDLNEEVQLEAMKCLTMVLEK--ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWE 378 (533)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHh--hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCch
Confidence 999888876543 23333334555555443 2222 3334556778899999998887766655443221
Q ss_pred hHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHh
Q 000200 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (1871)
Q Consensus 437 ~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~ 501 (1871)
..+...++.=...++-.++|++|.|-.|....+-+..--++-+.+..+..+.-+..+..+.++++
T Consensus 379 ~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn 443 (533)
T KOG2032|consen 379 EFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDTDMARFQAFYN 443 (533)
T ss_pred hhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHHH
Confidence 11211222112346668899999998888888777777777677777776443555657777765
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=94.36 E-value=2 Score=54.85 Aligned_cols=187 Identities=16% Similarity=0.203 Sum_probs=145.9
Q ss_pred hccChHHHHHHHHHHHHhhhcCCCCCC-ChHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHH
Q 000200 295 KATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (1871)
Q Consensus 295 ~s~KWkeRkEaLe~l~~l~~~pKi~~~-dy~eL~~~Lkk~l-~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lL 372 (1871)
....+-.|.-+++-+-.++ +|..++ ...+++..+...+ .+.+...-..++.++.-++|||=-+-.+.+..++..++
T Consensus 200 ~~~~~~~~~~~~~~la~Lv--NK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~ 277 (415)
T PF12460_consen 200 SSEDEFSRLAALQLLASLV--NKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLL 277 (415)
T ss_pred cCCChHHHHHHHHHHHHHH--cCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 4455889998888766554 446554 4777888777777 57888888899999999999996666788999999999
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHh--cCCC---------------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC
Q 000200 373 EKLKEKKPTVAESLTQTLQAMHKA--GCLN---------------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (1871)
Q Consensus 373 eklKEKK~~V~eAl~~aLda~~~~--~~~~---------------l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~ 435 (1871)
+-|.+ +.+...+..++.-++.- .+.+ +..++..+.+..+.-+...|..-+.=|.-.+++.|
T Consensus 278 ~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 278 ELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP 355 (415)
T ss_pred HHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC
Confidence 99999 66777777888777653 0101 34566677777777777788888888999999999
Q ss_pred hhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhh
Q 000200 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486 (1871)
Q Consensus 436 ~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~ 486 (1871)
+..+...+..++|.++.+|+=.+++||.++.++|-.++.-- ...+..+++
T Consensus 356 ~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~ 405 (415)
T PF12460_consen 356 KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLS 405 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHH
Confidence 99888888999999999999999999999999888887665 444555554
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.36 Score=52.36 Aligned_cols=111 Identities=23% Similarity=0.381 Sum_probs=83.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc-chhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~-DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1871)
+...||-.=.|=-|.| |. ++++.-|.+++|++||. ..|.+++..||.++..++.=.|+.|-.. .+-|+
T Consensus 14 l~~~dw~~ileicD~I-------n~--~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 14 LQSEDWGLNMEICDII-------NE--TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCcCHHHHHHHHHHH-------hC--CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 4566887554444443 22 34444799999999997 4689999999999999999999999875 56788
Q ss_pred HH-HHHHhccCc---hhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000200 939 SD-ILKCLGDNK---KHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1871)
Q Consensus 939 ~~-il~~l~D~K---~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1871)
.. ++..+.++. ..|++-++..+..|.....-++=++.|.+...
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~ 131 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSPDLTGVVEVYE 131 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCccchHHHHHHH
Confidence 87 677776433 48999999999999999866655555555443
|
The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways. |
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.5 Score=51.13 Aligned_cols=98 Identities=15% Similarity=0.287 Sum_probs=78.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1871)
+.+.||-.=.|--|.| + . +|++.-|-+++|++||...|.+++..||.++..++.=.|+.|... .+-|+.
T Consensus 14 l~~~dw~~ileicD~I----n---~--~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 14 NREEDWEAIQAFCEQI----N---K--EPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred CCCCCHHHHHHHHHHH----H---c--CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 4577886433333333 2 1 455446899999999999999999999999999999999999765 577999
Q ss_pred HHHHHhcc------CchhHHHHHHHHHHHHHHhcc
Q 000200 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 968 (1871)
Q Consensus 940 ~il~~l~D------~K~~vR~aa~~alda~~~~~g 968 (1871)
.++..+.+ .-..|++-.+..+..|.....
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99998864 347999999999999998876
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.69 Score=56.37 Aligned_cols=165 Identities=21% Similarity=0.261 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHHcccCCCCCCc-cchH---HHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHH
Q 000200 869 VRLESIEAVNKILEEANKRIQPAGT-GELF---GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (1871)
Q Consensus 869 ~RkEaLe~v~~il~~ankrI~p~~~-geL~---~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~ 944 (1871)
+..-|||-.+-|.+ +|.+..+ .|+. ..|=.-+.-+-..|...-++++...=.-+|+......++++.+++-.
T Consensus 71 VH~KaLevY~~IF~----~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpG 146 (307)
T PF04118_consen 71 VHQKALEVYEYIFE----RIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPG 146 (307)
T ss_pred HHHHHHHHHHHHHH----hcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc
Confidence 46778999888884 5666542 3443 34445567888899999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCC------C--------Ccch
Q 000200 945 LGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS------G--------FPDA 1010 (1871)
Q Consensus 945 l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~------~--------~~~~ 1010 (1871)
|-|...-+-+-+...++.+...+|-+.|...+-..+.+ ||..|.-++.|+.++++... . .++.
T Consensus 147 Lede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~---sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 223 (307)
T PF04118_consen 147 LEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIIT---SPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDP 223 (307)
T ss_pred cccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc---CcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCc
Confidence 99999999999999999999999999898888777763 57899999999999999876 1 2344
Q ss_pred hhhhhHHhhhcCCCCHHHHHHHHHHHHHHH
Q 000200 1011 AHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1871)
Q Consensus 1011 ~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m 1040 (1871)
.-++..+++||+|.+-=|++.+-++|-.-+
T Consensus 224 ~Llv~al~~~L~D~~iLVqR~~LDlLl~~~ 253 (307)
T PF04118_consen 224 GLLVRALCACLEDENILVQRGFLDLLLSHF 253 (307)
T ss_pred cHHHHHHHHHhCCchHHHHHHHHHHHHHhC
Confidence 556677889999999999998888774443
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=93.89 E-value=1.3 Score=49.73 Aligned_cols=111 Identities=18% Similarity=0.278 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhH-HHHHHHhhcCCc
Q 000200 339 IAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV-EDVKTSVKNKVP 417 (1871)
Q Consensus 339 v~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~-e~i~~al~~KnP 417 (1871)
..|-..++-+++.|+.. |...+-..+|.+..+|.|.-+.||..+..+|.-+...+.+.....+ -.++..+.+.||
T Consensus 2 ~~vR~n~i~~l~DL~~r----~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIR----YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred HHHHHHHHHHHHHHHHh----CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCH
Confidence 45566777888888765 5556677789999999999999999999999998877666666554 888899999999
Q ss_pred hhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCC
Q 000200 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG 457 (1871)
Q Consensus 418 ~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds 457 (1871)
.||..+..|+.+......+..+ ....|-++..+++.
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i----~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNII----YNNFPELISSLNNC 113 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHhCc
Confidence 9999999999999987444333 44556566666653
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.88 E-value=28 Score=45.77 Aligned_cols=279 Identities=17% Similarity=0.147 Sum_probs=164.8
Q ss_pred hHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccChhHHHhhchhhhcccChhHHHHHHHHHHHHHHh-hCCchhhH
Q 000200 128 VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRW-IGKDPVKT 206 (1871)
Q Consensus 128 ~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~~vv~~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~w-lG~~~lk~ 206 (1871)
.+...+.......-+.|...|+..|-++=+ |+|. .|.+.+...+++.+.+-.||.+|.+|+-..-.- .|+- ..
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL--~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~--e~ 271 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSE--GFKL--SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPL--ER 271 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcc--cccc--cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcc--cc
Confidence 445556666677789999999998866544 7753 478899999999999999999998886443222 2331 11
Q ss_pred HHhhhchHHHHHHHHHHHHhcCCC----CCCcc----------------------------hhh-hHHhHhhhhhhcccC
Q 000200 207 ILFEKMRDTMKKELEVELVNVSGT----ARPTR----------------------------KIR-AEQDKELGQELISED 253 (1871)
Q Consensus 207 ~L~~~Lkp~q~keLe~efek~~~~----~~P~R----------------------------~~R-s~q~~~~~~~~~~~~ 253 (1871)
.- + -.+-.++.|.++... .-..| .+| ..-+.+ ...+-..
T Consensus 272 e~-~-----e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahk--rpk~l~s 343 (823)
T KOG2259|consen 272 ES-E-----EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHK--RPKALYS 343 (823)
T ss_pred hh-h-----hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhccc--chHHHHh
Confidence 00 1 123344445443100 00000 011 000000 0001111
Q ss_pred CCC--CCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhh-hcCCCCCCChHHHHHHH
Q 000200 254 VGP--GPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTL 330 (1871)
Q Consensus 254 ~~~--~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~-~~pKi~~~dy~eL~~~L 330 (1871)
.|+ .|-.-++..+.++.|. +.+.|.+-=-=..|.-.+++-=.-.|+.|++.+..|. +.|.+...-+.=|+.+
T Consensus 344 ~GewSsGk~~~advpsee~d~----~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDM- 418 (823)
T KOG2259|consen 344 SGEWSSGKEWNADVPSEEDDE----EEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDM- 418 (823)
T ss_pred cCCcccCccccccCchhhccc----cccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-
Confidence 111 0111112223333332 2333321110124566666666778999999999975 6788875433334444
Q ss_pred HHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHH
Q 000200 331 KKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKT 410 (1871)
Q Consensus 331 kk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~ 410 (1871)
++|---.|-..|+..+..|+.-+ .--...++.|++.+-|.-..||+++++-|-.. . ++=-++++....
T Consensus 419 ---fNDE~~~VRL~ai~aL~~Is~~l-----~i~eeql~~il~~L~D~s~dvRe~l~elL~~~-~---~~d~~~i~m~v~ 486 (823)
T KOG2259|consen 419 ---FNDEIEVVRLKAIFALTMISVHL-----AIREEQLRQILESLEDRSVDVREALRELLKNA-R---VSDLECIDMCVA 486 (823)
T ss_pred ---hccHHHHHHHHHHHHHHHHHHHh-----eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C---CCcHHHHHHHHH
Confidence 45655667788999999999873 23456799999999999999999999887643 1 222234444443
Q ss_pred Hh-h--cCCchhHHHHHHHHHHHHhhCChh
Q 000200 411 SV-K--NKVPLVRSLTLNWVTFCIETSSKA 437 (1871)
Q Consensus 411 al-~--~KnP~vk~etl~~L~r~l~~~~~~ 437 (1871)
.| + .|.|+=|-+++.-+.+.=++++.-
T Consensus 487 ~lL~~L~kyPqDrd~i~~cm~~iGqnH~~l 516 (823)
T KOG2259|consen 487 HLLKNLGKYPQDRDEILRCMGRIGQNHRRL 516 (823)
T ss_pred HHHHHhhhCCCCcHHHHHHHHHHhccChhh
Confidence 33 2 688999999999888888877543
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.68 E-value=30 Score=44.80 Aligned_cols=357 Identities=16% Similarity=0.178 Sum_probs=201.3
Q ss_pred cccc-hhhhHHHHHHHhccC-------CHHHHHHHHHHHHHHHHhcCCC--hhhhHHHHHHHhhcCCchhHHHHHHHHHH
Q 000200 360 FSGS-SRFLLPVLLEKLKEK-------KPTVAESLTQTLQAMHKAGCLN--LVDVVEDVKTSVKNKVPLVRSLTLNWVTF 429 (1871)
Q Consensus 360 F~~y-~~~~~~~lLeklKEK-------K~~V~eAl~~aLda~~~~~~~~--l~~~~e~i~~al~~KnP~vk~etl~~L~r 429 (1871)
|++. +.-++|.+|.-|--. -=++--|+..||.-+++. |-. +..+++-|-.-+.+.+..-|....--+.-
T Consensus 314 fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~-~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGS 392 (858)
T COG5215 314 FARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL-KGDKIMRPVLGFVEQNIRSESWANREAAVMAFGS 392 (858)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH-hhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhh
Confidence 4433 344677766554322 225667888999988765 321 33344445555566676666655555555
Q ss_pred HHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCC
Q 000200 430 CIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVAT 509 (1871)
Q Consensus 430 ~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~ 509 (1871)
.+.......+.+++.+.+|.+...++|+.--|.+.++.|+|.|.-++-+- +.|- ..|-...-+-..-..+-
T Consensus 393 vm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~-i~p~-~Hl~~~vsa~liGl~D~------- 463 (858)
T COG5215 393 VMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI-ISPC-GHLVLEVSASLIGLMDC------- 463 (858)
T ss_pred hhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh-cCcc-ccccHHHHHHHhhhhcc-------
Confidence 66655667778888889999999999999999999999999999887642 2211 11211111111111110
Q ss_pred CCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 000200 510 GTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEM 589 (1871)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 589 (1871)
|. +. ....... ....--- | ++. ..+ +.-+
T Consensus 464 --p~--~~-------------~ncsw~~-~nlv~h~-a-----------------------~a~--------~~~-~S~l 492 (858)
T COG5215 464 --PF--RS-------------INCSWRK-ENLVDHI-A-----------------------KAV--------REV-ESFL 492 (858)
T ss_pred --ch--HH-------------hhhHHHH-HhHHHhh-h-----------------------hhh--------ccc-cchh
Confidence 00 00 0000000 0000000 0 000 000 0000
Q ss_pred CHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHH---HhcCCCccchHHHHHHHHH
Q 000200 590 SLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQSVEILVRLV---CMLPGWSEKNVQVQQQVIE 665 (1871)
Q Consensus 590 s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~-~~~~~~~~~~lvr~l---~~~PgwkesNfqV~~~~le 665 (1871)
.-.-++.+..++.. +.+...+...|..+++.|...|.- .+. .++++.-+. .++ -|.-.+|+...+.
T Consensus 493 -~~fY~ai~~~Lv~~---t~~~~Ne~n~R~s~fsaLgtli~~~~d~---V~~~~a~~~~~~~~k---l~~~isv~~q~l~ 562 (858)
T COG5215 493 -AKFYLAILNALVKG---TELALNESNLRVSLFSALGTLILICPDA---VSDILAGFYDYTSKK---LDECISVLGQILA 562 (858)
T ss_pred -HHHHHHHHHHHHHH---HHhhccchhHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHHHHH---HHHHHHHhhhhhh
Confidence 11222222233222 444467788999999999887765 222 234443322 222 2334444443332
Q ss_pred H-----HHHHHHhcCCCCccchhhhccchhhcccc-c-hhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHH
Q 000200 666 V-----INYLAATATKFPKKCVVLCLLGISERVAD-I-KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEG 738 (1871)
Q Consensus 666 i-----l~~la~~~~~fs~~~~~~~l~~lveKlgD-~-K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~ 738 (1871)
. +..+-++ ...++..+|-+-+- + -+-+...+++..+-|...|.++++.++-...
T Consensus 563 ~eD~~~~~elqSN--------~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIs----------- 623 (858)
T COG5215 563 TEDQLLVEELQSN--------YIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAIS----------- 623 (858)
T ss_pred hHHHHHHHHHHHH--------HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHH-----------
Confidence 1 1111111 12344445544443 2 2456678899999999999999999887642
Q ss_pred HHHHHHHH-HHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHH
Q 000200 739 ILWMVSAV-EDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (1871)
Q Consensus 739 l~wl~~ai-~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~E 812 (1871)
-|...+ +.|- .-+..++.|+-.+ |.-++-.|-..|+.|+|.+-.-+|.+++.|-.++--.|.+.|..+
T Consensus 624 --al~~sl~e~Fe---~y~~~fiPyl~~a-ln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~ 692 (858)
T COG5215 624 --ALSTSLEERFE---QYASKFIPYLTRA-LNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSE 692 (858)
T ss_pred --HHHHHHHHHHH---HHHhhhhHHHHHH-hcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCh
Confidence 233323 2443 2356788998887 999999999999999999999999999888777666666666544
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.43 E-value=6.8 Score=51.95 Aligned_cols=341 Identities=18% Similarity=0.173 Sum_probs=195.7
Q ss_pred chhH-hHHHHHH-HHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhh--hHHHHHHHh
Q 000200 906 DSNK-NLVMATL-ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKM--VPYVTTALT 981 (1871)
Q Consensus 906 DsNk-~lv~~al-~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~--~~~i~~~L~ 981 (1871)
|||+ ..+..|+ .||++||.|=. +..++|+|++...-+..-|+.-.-==|-.+++.-.=-.+ +.+++.+|+
T Consensus 45 dSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~ 118 (968)
T KOG1060|consen 45 DSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALK 118 (968)
T ss_pred hccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhc
Confidence 4444 4555555 57788877533 778999999999999999988887777777766543333 348999999
Q ss_pred cccCCcchHHHHHHHHHHHhccCCCCcchhhhhh-HHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhH
Q 000200 982 DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK-PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPAL 1060 (1871)
Q Consensus 982 ~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~-p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~ 1060 (1871)
+| ||..|. |-.|.|..++-+ -..+++. .+-.|..|-++-||+.|.-+++.+.. |+|.-+
T Consensus 119 Dp--N~LiRa----sALRvlSsIRvp-~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-------------Ld~e~k 178 (968)
T KOG1060|consen 119 DP--NQLIRA----SALRVLSSIRVP-MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-------------LDPEQK 178 (968)
T ss_pred CC--cHHHHH----HHHHHHHhcchh-hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-------------CChhhH
Confidence 88 465555 444556566532 2233322 24459999999999999998877654 777788
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChH
Q 000200 1061 ALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKE 1140 (1871)
Q Consensus 1061 ~~i~~~l~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~ 1140 (1871)
..+++++++-=.. .++ . +-+.+.
T Consensus 179 ~qL~e~I~~LLaD-----------------------------~sp-l------------------VvgsAv--------- 201 (968)
T KOG1060|consen 179 DQLEEVIKKLLAD-----------------------------RSP-L------------------VVGSAV--------- 201 (968)
T ss_pred HHHHHHHHHHhcC-----------------------------CCC-c------------------chhHHH---------
Confidence 8888888886320 000 0 001111
Q ss_pred HHHhhhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCC--------------Ch----
Q 000200 1141 DRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPS--------------IR---- 1202 (1871)
Q Consensus 1141 ~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~--------------~~---- 1202 (1871)
..|++-=+|.++.+..-.... -+.|-.-|--.++-.|.||.+.-.+ ++
T Consensus 202 ---------~AF~evCPerldLIHknyrkl-----C~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~ 267 (968)
T KOG1060|consen 202 ---------MAFEEVCPERLDLIHKNYRKL-----CRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCN 267 (968)
T ss_pred ---------HHHHHhchhHHHHhhHHHHHH-----HhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCccccc
Confidence 225544455555442221111 1111111111244556666653211 00
Q ss_pred ----------h-hhhHhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHh-HHhhhhhHHHHhhC---C
Q 000200 1203 ----------K-DIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES-EAAVFLPCLVEKSG---H 1267 (1871)
Q Consensus 1203 ----------~-~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~-Ea~~flP~Lv~K~G---d 1267 (1871)
. ..=.-++|+|+-..==|+..|++|.+.|-... |+|..- +...|+-.||--+- .
T Consensus 268 ~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~-----------y~lAP~~~~~~i~kaLvrLLrs~~~ 336 (968)
T KOG1060|consen 268 LKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLF-----------YHLAPKNQVTKIAKALVRLLRSNRE 336 (968)
T ss_pred ccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHH-----------HhhCCHHHHHHHHHHHHHHHhcCCc
Confidence 0 00124778888766667889999999865433 333332 44444444444332 2
Q ss_pred ChHHHHHHHHHHHHHHhhccCccchHHHHHh-hhccCChhh-HhHHHHHHHHHHHhhcCcccCccchHHHHHHHhccCCh
Q 000200 1268 NIEKVREKMRELTKQIVNFYSATKTLPYILE-GLRSKNNRT-RIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDG 1345 (1871)
Q Consensus 1268 ~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~-glksKN~r~-R~Ecl~el~~li~~~G~~v~~~~Kal~~ia~~i~drD~ 1345 (1871)
.+..|-+.+..+..+-..+|- ||+-. =+.|+-+-+ ..==|+.|..|+..-.+. --|++.-.+|.+.|.
T Consensus 337 vqyvvL~nIa~~s~~~~~lF~-----P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~-----~ILrE~q~YI~s~d~ 406 (968)
T KOG1060|consen 337 VQYVVLQNIATISIKRPTLFE-----PHLKSFFVRSSDPTQVKILKLEILSNLANESNIS-----EILRELQTYIKSSDR 406 (968)
T ss_pred chhhhHHHHHHHHhcchhhhh-----hhhhceEeecCCHHHHHHHHHHHHHHHhhhccHH-----HHHHHHHHHHhcCch
Confidence 444444444444433333321 23221 113333322 222367777776554432 247899999999998
Q ss_pred hHHHHHHHHHHHHHHHhch
Q 000200 1346 EIRKAALNTLATGYKILGE 1364 (1871)
Q Consensus 1346 ~VR~AALn~l~~~y~~~Gd 1364 (1871)
.|-.+|+.+||-+-..+|.
T Consensus 407 ~faa~aV~AiGrCA~~~~s 425 (968)
T KOG1060|consen 407 SFAAAAVKAIGRCASRIGS 425 (968)
T ss_pred hHHHHHHHHHHHHHHhhCc
Confidence 8999999999877665553
|
|
| >cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.62 Score=48.51 Aligned_cols=75 Identities=20% Similarity=0.382 Sum_probs=60.7
Q ss_pred CCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhh--hhhHHHHH-----Hh-ccCchhHHHHHHHHHH
Q 000200 890 PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILK-----CL-GDNKKHMRECTLTVLD 961 (1871)
Q Consensus 890 p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k--~l~~~il~-----~l-~D~K~~vR~aa~~ald 961 (1871)
+....+.+.+|++||.+.|-+++..||.++..+..-.|+.|..+.. .++-.++. .. .|.-..||+.+.+.+.
T Consensus 32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 4456899999999999999999999999999999999999988743 33333332 12 2456799999999999
Q ss_pred HHH
Q 000200 962 AWL 964 (1871)
Q Consensus 962 a~~ 964 (1871)
.|.
T Consensus 112 ~w~ 114 (115)
T cd00197 112 LWA 114 (115)
T ss_pred HHh
Confidence 996
|
The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.88 E-value=32 Score=46.13 Aligned_cols=151 Identities=17% Similarity=0.148 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhhh-cCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccc-ccchhhhHHHHHHHhccC
Q 000200 301 ERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF-SGSSRFLLPVLLEKLKEK 378 (1871)
Q Consensus 301 eRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F-~~y~~~~~~~lLeklKEK 378 (1871)
.|+.+-.-+.++-. ++.+... ..++..|+..+.|+|..||+.|+..+..|.+-=+..+ ..-...++..+|+++.|=
T Consensus 137 vRktaa~~vakl~~~~~~~~~~--~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec 214 (734)
T KOG1061|consen 137 VRKTAAVCVAKLFDIDPDLVED--SGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNEC 214 (734)
T ss_pred HHHHHHHHHHHhhcCChhhccc--cchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHh
Confidence 35555444444432 3444322 3578999999999999999999999999998866422 233566777777777775
Q ss_pred CHHHHHHHHHHHHHHHHhc---CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhC
Q 000200 379 KPTVAESLTQTLQAMHKAG---CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN 455 (1871)
Q Consensus 379 K~~V~eAl~~aLda~~~~~---~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~ 455 (1871)
--.-+- .-||....|. ...+.++.+-+...++|-|+.|-..+.+++-..+...+. ....+.+.+.|.++.+++
T Consensus 215 ~EW~qi---~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~pl~tlls 290 (734)
T KOG1061|consen 215 TEWGQI---FILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPPLVTLLS 290 (734)
T ss_pred hhhhHH---HHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH-HHHHHHHHhcccceeeec
Confidence 554443 3445555541 123557888999999999999999999999888876654 112334666777777664
Q ss_pred CC
Q 000200 456 DG 457 (1871)
Q Consensus 456 Ds 457 (1871)
-.
T Consensus 291 ~~ 292 (734)
T KOG1061|consen 291 SE 292 (734)
T ss_pred cc
Confidence 33
|
|
| >KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.43 Score=60.83 Aligned_cols=101 Identities=26% Similarity=0.413 Sum_probs=81.2
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhh
Q 000200 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGV 937 (1871)
Q Consensus 860 ~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l 937 (1871)
..+.++||-.=.|==|.| + ....+| -|.+++||+|+...|-.++..||.+|..+.+=+|..|-.+ .+-|
T Consensus 12 ~~l~~pDWa~NleIcD~I----N--~~~~~~---~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~f 82 (470)
T KOG1087|consen 12 ESLAEPDWALNLEICDLI----N--STEGGP---KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEF 82 (470)
T ss_pred ccccCccHHHHHHHHHHH----h--cCccCc---HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 456788997655433333 2 122222 5999999999999999999999999999999999999865 5679
Q ss_pred hHHHHHHhccC--chhHHHHHHHHHHHHHHhccc
Q 000200 938 LSDILKCLGDN--KKHMRECTLTVLDAWLAAVHL 969 (1871)
Q Consensus 938 ~~~il~~l~D~--K~~vR~aa~~alda~~~~~gl 969 (1871)
+..++.+++.+ -..||+-++..|++|.++.+-
T Consensus 83 L~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 83 LNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 99999999887 458999999999999988763
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.61 E-value=5.2 Score=52.73 Aligned_cols=133 Identities=14% Similarity=0.192 Sum_probs=79.4
Q ss_pred cccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcC
Q 000200 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG 927 (1871)
Q Consensus 848 vDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG 927 (1871)
.+|..-+.-+++.-+++++.-+|+-+|+=.-.|++.-| ++|++..||+++.++|-+=...+-+.=+.+-..|.
T Consensus 312 ~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN-------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih 384 (948)
T KOG1058|consen 312 EKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN-------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIH 384 (948)
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc-------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHH
Confidence 34445556677888999999999999999999997543 69999999999987775422222211122222221
Q ss_pred ---hhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000200 928 ---PAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1871)
Q Consensus 928 ---~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~ 1004 (1871)
-.|--++-.++|-+++-++|.....-.+. +..+-+++. + .|.+|..+++-|.+.|+..
T Consensus 385 ~cav~Fp~~aatvV~~ll~fisD~N~~aas~v----------------l~FvrE~ie--k-~p~Lr~~ii~~l~~~~~~i 445 (948)
T KOG1058|consen 385 ACAVKFPEVAATVVSLLLDFISDSNEAAASDV----------------LMFVREAIE--K-FPNLRASIIEKLLETFPQI 445 (948)
T ss_pred HHhhcChHHHHHHHHHHHHHhccCCHHHHHHH----------------HHHHHHHHH--h-CchHHHHHHHHHHHhhhhh
Confidence 23444555666666666666654422221 122223332 1 3556666666666666655
Q ss_pred CC
Q 000200 1005 SG 1006 (1871)
Q Consensus 1005 ~~ 1006 (1871)
++
T Consensus 446 rS 447 (948)
T KOG1058|consen 446 RS 447 (948)
T ss_pred cc
Confidence 54
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=91.34 E-value=1.7 Score=55.27 Aligned_cols=119 Identities=20% Similarity=0.115 Sum_probs=87.0
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhH
Q 000200 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV 405 (1871)
Q Consensus 326 L~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~ 405 (1871)
.+..|...+.|++-.|-..+++.++.+ .-....+.++.-+++..+.|+.++..++-..- .+..
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-------~~~~ 149 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWL----------GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR-------HDPG 149 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcC----------CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc-------cChH
Confidence 488888888888888777666666532 23455677888889999999987775555321 2346
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000200 406 EDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1871)
Q Consensus 406 e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1871)
+-+..+|++..|.||.+.+.-|...=. ...+|.+...+.|.+++||.+|..+++-+
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 778888999999999988877653211 23456677889999999999999988544
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=91.28 E-value=4.1 Score=51.90 Aligned_cols=146 Identities=15% Similarity=0.021 Sum_probs=93.6
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhh
Q 000200 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1871)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~ 936 (1871)
.++.-+++.+.++|..+++.+.. ++. +-...|+.-|+|.+..|-..|+.++|.+... .
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~------r~~------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~----------~ 178 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGA------HRH------DPGPALEAALTHEDALVRAAALRALGELPRR----------L 178 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHh------hcc------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------c
Confidence 46777888999999999976653 222 2234667777899999999999999887644 3
Q ss_pred hhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhH
Q 000200 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (1871)
Q Consensus 937 l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p 1016 (1871)
.+|.+...+.|..+.||.+|+.++-.. |-..-++.+..+...+ ++..+..+..+++.. . ....+..
T Consensus 179 a~~~L~~al~d~~~~VR~aA~~al~~l----G~~~A~~~l~~~~~~~--g~~~~~~l~~~lal~----~----~~~a~~~ 244 (410)
T TIGR02270 179 SESTLRLYLRDSDPEVRFAALEAGLLA----GSRLAWGVCRRFQVLE--GGPHRQRLLVLLAVA----G----GPDAQAW 244 (410)
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHhcc--CccHHHHHHHHHHhC----C----chhHHHH
Confidence 355567779999999999999998333 3333334344433322 233445555554322 1 1134445
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHH
Q 000200 1017 ASIAMTDKSSDVRKAAEACIVEIL 1040 (1871)
Q Consensus 1017 ~~~~L~Dr~~dVRkaA~~~L~~~m 1040 (1871)
+...+.|.. ||..+-.+|+.+-
T Consensus 245 L~~ll~d~~--vr~~a~~AlG~lg 266 (410)
T TIGR02270 245 LRELLQAAA--TRREALRAVGLVG 266 (410)
T ss_pred HHHHhcChh--hHHHHHHHHHHcC
Confidence 555666644 8887777776543
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.26 Score=39.23 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=25.1
Q ss_pred hhHHhhhcCCCCHHHHHHHHHHHHHHHHhc
Q 000200 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAG 1043 (1871)
Q Consensus 1014 ~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~ 1043 (1871)
+..+..+++|.+++||.+|..+|+.+++++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 345778999999999999999999998763
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.92 E-value=12 Score=50.09 Aligned_cols=292 Identities=18% Similarity=0.225 Sum_probs=179.4
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh-h
Q 000200 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-V 404 (1871)
Q Consensus 326 L~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~-~ 404 (1871)
|...|++=|..+|..||.+|+..++.|+.. --++-+.|.+-+.++-.|+.||.-+.-|+--+... .-++.+ +
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~s~------EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK-~P~l~e~f 180 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNICSP------EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRK-VPDLVEHF 180 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccCCH------HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHc-CchHHHHh
Confidence 567788888899999999999999998754 34788999999999999999999777777666654 223333 4
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhh-----------------CCCCHHHHHHHHH
Q 000200 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL-----------------NDGTPEVRDAAFS 467 (1871)
Q Consensus 405 ~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l-----------------~Ds~~~VR~aA~~ 467 (1871)
+......|..|++.|-..++.++.+..+..+. .+. ..+.+++.+++.| .|+.--||
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-~l~-~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~----- 253 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPD-ALS-YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR----- 253 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-HHH-HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH-----
Confidence 45667788999999999999999998876542 222 2244666555544 34433333
Q ss_pred HHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCC
Q 000200 468 VLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRP 547 (1871)
Q Consensus 468 ~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 547 (1871)
+-.+++++|.. |+........++.... +.+ . +
T Consensus 254 -iLrlLriLGq~---------d~daSd~M~DiLaqva----tnt---------------d---------------s---- 285 (866)
T KOG1062|consen 254 -ILRLLRILGQN---------DADASDLMNDILAQVA----TNT---------------D---------------S---- 285 (866)
T ss_pred -HHHHHHHhcCC---------CccHHHHHHHHHHHHH----hcc---------------c---------------c----
Confidence 23344555532 3323333333332110 000 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHH
Q 000200 548 VSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQ 627 (1871)
Q Consensus 548 ~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~ 627 (1871)
++.. -..+-.|-+. -+.++- .+=+-|.-|+.-+-+
T Consensus 286 ---------------------------skN~-------GnAILYE~V~-TI~~I~----------~~~~LrvlainiLgk 320 (866)
T KOG1062|consen 286 ---------------------------SKNA-------GNAILYECVR-TIMDIR----------SNSGLRVLAINILGK 320 (866)
T ss_pred ---------------------------cccc-------hhHHHHHHHH-HHHhcc----------CCchHHHHHHHHHHH
Confidence 0000 0001111111 111111 122346666666665
Q ss_pred HHHhhhcc--chhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHH
Q 000200 628 QVEAVQNL--DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKC 705 (1871)
Q Consensus 628 ~v~~~~~~--~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~ 705 (1871)
++...+.. ......|.|.+..+|. ++++ -+.++-.|+ |=.|+-.|..|.|+
T Consensus 321 FL~n~d~NirYvaLn~L~r~V~~d~~------------------avqr----Hr~tIleCL-----~DpD~SIkrralEL 373 (866)
T KOG1062|consen 321 FLLNRDNNIRYVALNMLLRVVQQDPT------------------AVQR----HRSTILECL-----KDPDVSIKRRALEL 373 (866)
T ss_pred HhcCCccceeeeehhhHHhhhcCCcH------------------HHHH----HHHHHHHHh-----cCCcHHHHHHHHHH
Confidence 55443222 1123334444433321 2221 122333343 33567789999999
Q ss_pred HHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccC
Q 000200 706 LTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS 752 (1871)
Q Consensus 706 L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~ 752 (1871)
+..+...-...+++.+++.++-+. .+....++...|+.+.+.|-..
T Consensus 374 s~~lvn~~Nv~~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 374 SYALVNESNVRVMVKELLEFLESS-DEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HHHHhccccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999998666 9999999999999999999974
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=90.85 E-value=1.9 Score=48.76 Aligned_cols=135 Identities=22% Similarity=0.260 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHhc-cccccchhhhHHHH------------HHHhccCCHHHHHHHHHHHHHHHHhcC---------
Q 000200 341 VAVEAIQAIGNLARGLR-THFSGSSRFLLPVL------------LEKLKEKKPTVAESLTQTLQAMHKAGC--------- 398 (1871)
Q Consensus 341 vv~~A~~~i~~lA~gLr-~~F~~y~~~~~~~l------------LeklKEKK~~V~eAl~~aLda~~~~~~--------- 398 (1871)
|-+.|+.|++.|++... +.|..|-..++|.- -=-++|--+.||.++..+|.++... +
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g-sk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG-SKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc-cHHHHHHHHh
Confidence 44679999999999964 66889988888876 2235788899999999999988753 2
Q ss_pred --------CChh--------hhHHHHHHHhhc-CCchhHHHHHHHHHHHHhhCChhHHH-HhhhhhHHHHHhhhCCCCHH
Q 000200 399 --------LNLV--------DVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKAAVL-KVHKDYVPICMECLNDGTPE 460 (1871)
Q Consensus 399 --------~~l~--------~~~e~i~~al~~-KnP~vk~etl~~L~r~l~~~~~~~~~-~~~k~~~~~l~k~l~Ds~~~ 460 (1871)
++|. ++...+..++++ +++.+-.+.++-|+-.++++|-.-+. .++..++..+...+.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 1222 333455667764 46888889999999888887755443 56677888888899999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 000200 461 VRDAAFSVLAAIAKSV 476 (1871)
Q Consensus 461 VR~aA~~~l~~lmk~~ 476 (1871)
||-++..|+|.+.-..
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999987543
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.8 Score=51.59 Aligned_cols=123 Identities=17% Similarity=0.250 Sum_probs=97.6
Q ss_pred cccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHH-cccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHH---H
Q 000200 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV---A 923 (1871)
Q Consensus 848 vDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~-ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~l---A 923 (1871)
.|...-| +.|.+.+-.++-=-|-=|.+.+.++|.. +..+|-|-. -.|+..||.-|.-.|..+...+|+++++| .
T Consensus 34 Ldy~~~L-pif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 34 LDYHHYL-PIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred cchhhHH-HHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 3433333 4577777777766677788888888887 778899987 89999999999999999999999999999 8
Q ss_pred HhcChhHHhhhhhhhHHHHHHhcc------------CchhHHHHHHHHHHHHHHhccchhhh
Q 000200 924 SAMGPAVEKSSKGVLSDILKCLGD------------NKKHMRECTLTVLDAWLAAVHLDKMV 973 (1871)
Q Consensus 924 ~amG~~~~k~~k~l~~~il~~l~D------------~K~~vR~aa~~alda~~~~~gl~~~~ 973 (1871)
..+|+..-+|-|.++|.+- .|.+ ++.++++-..++|.......|=+.+.
T Consensus 112 ~~vG~aLvPyyrqLLp~ln-~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~ 172 (183)
T PF10274_consen 112 DMVGEALVPYYRQLLPVLN-LFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFI 172 (183)
T ss_pred hhhhHHHHHHHHHHHHHHH-HHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHH
Confidence 8889999999999988664 3333 45788888888888887777765543
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.58 E-value=3.3 Score=53.35 Aligned_cols=186 Identities=17% Similarity=0.186 Sum_probs=134.3
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCC---CCCCChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccccccc-
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKR---IAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS- 363 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pK---i~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y- 363 (1871)
.-..++.|.+=+.+.++.+.+-++++..+ |...--..++..|-..+. |.|-.+...|+-+++.||.|--..-.-+
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv 149 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVV 149 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccc
Confidence 45667788888889999999999876444 432212246666777776 8899999999999999999987665544
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhh------HHHHHHHhhcCCc--hhHHHHHHHHHHHHhhCC
Q 000200 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV------VEDVKTSVKNKVP--LVRSLTLNWVTFCIETSS 435 (1871)
Q Consensus 364 ~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~------~e~i~~al~~KnP--~vk~etl~~L~r~l~~~~ 435 (1871)
-...+|.++.-+-.....|+|.+.=||-.++.. +..+-|+ ++.++..+.+..+ .+| .+.|.-.-|....
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagd-s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lR--n~tW~LsNlcrgk 226 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGD-SPDCRDYVLSCGALDPLLRLLNKSDKLSMLR--NATWTLSNLCRGK 226 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccC-ChHHHHHHHhhcchHHHHHHhccccchHHHH--HHHHHHHHHHcCC
Confidence 345678889999999999999998888888765 4344433 3566666666665 444 3445555554332
Q ss_pred -hhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000200 436 -KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1871)
Q Consensus 436 -~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1871)
+++-...++.++|++..++.+.|++|..-|+-++..|...--
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n 269 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSN 269 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence 332234558899999999999999999999988887764433
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.28 E-value=47 Score=44.21 Aligned_cols=254 Identities=16% Similarity=0.156 Sum_probs=162.0
Q ss_pred HHHHHHhhcchhhHHHHHHHHhh-----ccCchhHHHHHHHHHHHHHhhCCCc--cC-hhHHHhhchhhhcccChhHHHH
Q 000200 116 VFMLWVELEAVDVFLDVMEKAIK-----NKVAKAVVPAIDVMFQALSEFGAKI--IP-PKRILKMLPELFDHQDQNVRAS 187 (1871)
Q Consensus 116 ~~l~~vE~e~~~~v~e~ll~~~~-----~K~PKvvaaai~~l~~~l~~FG~~v--v~-~K~ilk~l~~lf~~~dk~VR~e 187 (1871)
.+-.|+|....+++-+.++..++ .|+|=++---+..+...+..|--.- .+ +.+++.++-...++.|++||-.
T Consensus 25 l~~k~~em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfr 104 (892)
T KOG2025|consen 25 LLAKVMEMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFR 104 (892)
T ss_pred HHHHHHHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHH
Confidence 34445555555555555554444 6888888888888888888876421 12 5678888888888999999987
Q ss_pred HHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCCC
Q 000200 188 SKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVP 267 (1871)
Q Consensus 188 a~~L~vely~wlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (1871)
...++--+---.|. +-+.+|++|+..++
T Consensus 105 vlqila~l~d~~~e--idd~vfn~l~e~l~-------------------------------------------------- 132 (892)
T KOG2025|consen 105 VLQILALLSDENAE--IDDDVFNKLNEKLL-------------------------------------------------- 132 (892)
T ss_pred HHHHHHHHhccccc--cCHHHHHHHHHHHH--------------------------------------------------
Confidence 77666555443331 23344455444443
Q ss_pred CCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhc-cccHHHHHHHH
Q 000200 268 PEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAI 346 (1871)
Q Consensus 268 ~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~ 346 (1871)
.++.+.-=-.|.+|+-.|-.+-..|+ ++--+++++|+.+|. |+|--|-..|+
T Consensus 133 ------------------------~Rl~Drep~VRiqAv~aLsrlQ~d~~---dee~~v~n~l~~liqnDpS~EVRRaaL 185 (892)
T KOG2025|consen 133 ------------------------IRLKDREPNVRIQAVLALSRLQGDPK---DEECPVVNLLKDLIQNDPSDEVRRAAL 185 (892)
T ss_pred ------------------------HHHhccCchHHHHHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCCcHHHHHHHH
Confidence 33333333345555555544433222 233467888999998 99999999988
Q ss_pred HHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHH
Q 000200 347 QAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNW 426 (1871)
Q Consensus 347 ~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~ 426 (1871)
-||.-= ...+|-++||-+|-+..+|.-+ |
T Consensus 186 snI~vd------------nsTlp~IveRarDV~~anRrlv---------Y------------------------------ 214 (892)
T KOG2025|consen 186 SNISVD------------NSTLPCIVERARDVSGANRRLV---------Y------------------------------ 214 (892)
T ss_pred HhhccC------------cccchhHHHHhhhhhHHHHHHH---------H------------------------------
Confidence 887532 3456779999999887766421 1
Q ss_pred HHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCC-----HHHHHHHHHHHh
Q 000200 427 VTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD-----DVRRNKLSEMIA 501 (1871)
Q Consensus 427 L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld-----~~kk~KI~e~~~ 501 (1871)
.||++....-.+ . ++..+-.+-.+|||+.-+||.|+..++..=.--+.+..+-..|+.|| +...+.|+.+++
T Consensus 215 -~r~lpkid~r~l-s-i~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 215 -ERCLPKIDLRSL-S-IDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred -HHhhhhhhhhhh-h-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 122221100000 0 12234456689999999999999999988655566666778888886 667777888887
Q ss_pred c
Q 000200 502 G 502 (1871)
Q Consensus 502 ~ 502 (1871)
+
T Consensus 292 ~ 292 (892)
T KOG2025|consen 292 G 292 (892)
T ss_pred H
Confidence 5
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.03 E-value=15 Score=51.08 Aligned_cols=278 Identities=17% Similarity=0.258 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhh----hccchhhc
Q 000200 617 ERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL----CLLGISER 692 (1871)
Q Consensus 617 ~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~----~l~~lveK 692 (1871)
.|++|+|-|... ...-..+.-.|-++=|+.+. |.|+-.+|+...++.|+.+...-..+....+.. ++|.|-.=
T Consensus 439 tK~~ALeLl~~l-S~~i~de~~LDRVlPY~v~l--~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l 515 (1431)
T KOG1240|consen 439 TKLAALELLQEL-STYIDDEVKLDRVLPYFVHL--LMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL 515 (1431)
T ss_pred hHHHHHHHHHHH-hhhcchHHHHhhhHHHHHHH--hcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence 467888876633 22111222355566666543 899999999999999999887667777666655 44554444
Q ss_pred cccc---hhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCcc-------------c-
Q 000200 693 VADI---KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL-------------K- 755 (1871)
Q Consensus 693 lgD~---K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~-------------~- 755 (1871)
+-|. -+|-.-..+|-.+|+.. +.++ .+++.++.-|+-.- .
T Consensus 516 ~~d~~~~~vRiayAsnla~LA~tA---------~rFl--------------e~~q~~~~~g~~n~~nset~~~~~~~~~~ 572 (1431)
T KOG1240|consen 516 LNDSSAQIVRIAYASNLAQLAKTA---------YRFL--------------ELTQELRQAGMLNDPNSETAPEQNYNTEL 572 (1431)
T ss_pred hccCccceehhhHHhhHHHHHHHH---------HHHH--------------HHHHHHHhcccccCcccccccccccchHH
Confidence 4442 24444445555555421 1111 11122222222100 0
Q ss_pred ---hHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcccccccc
Q 000200 756 ---LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASE 832 (1871)
Q Consensus 756 ---~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~ 832 (1871)
.+.+-+.+-.. |..+.|.||.+=++-++.+|.|.| |...
T Consensus 573 ~~L~~~V~~~v~sL-lsd~~~~Vkr~Lle~i~~LC~FFG-----------------------k~ks-------------- 614 (1431)
T KOG1240|consen 573 QALHHTVEQMVSSL-LSDSPPIVKRALLESIIPLCVFFG-----------------------KEKS-------------- 614 (1431)
T ss_pred HHHHHHHHHHHHHH-HcCCchHHHHHHHHHHHHHHHHhh-----------------------hccc--------------
Confidence 11222233444 556667777777766666665443 2100
Q ss_pred ccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccc-hHHHHhhhccchhHhH
Q 000200 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE-LFGGLRGRLYDSNKNL 911 (1871)
Q Consensus 833 ~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~ge-L~~aLk~rl~DsNk~l 911 (1871)
+|. |=+-+++=++|++|.-|-.-.|.+-.+. -++.+--..| |++-|.+-|.|.--.|
T Consensus 615 ---------ND~---------iLshLiTfLNDkDw~LR~aFfdsI~gvs----i~VG~rs~seyllPLl~Q~ltD~EE~V 672 (1431)
T KOG1240|consen 615 ---------NDV---------ILSHLITFLNDKDWRLRGAFFDSIVGVS----IFVGWRSVSEYLLPLLQQGLTDGEEAV 672 (1431)
T ss_pred ---------ccc---------hHHHHHHHhcCccHHHHHHHHhhccceE----EEEeeeeHHHHHHHHHHHhccCcchhh
Confidence 121 4456778899999999999999987654 2455442233 5666788889999999
Q ss_pred HHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccch----hhhHHHHHHHh
Q 000200 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMVPYVTTALT 981 (1871)
Q Consensus 912 v~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~----~~~~~i~~~L~ 981 (1871)
+..||.++..+-+- |-==++|+.-++..++--|-.-..+||.++..-+-++..+.+-. .++|.|-.+|+
T Consensus 673 iv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 673 IVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred HHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 99999888777653 22224567777777777888888889998888888887776632 23555555555
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.63 E-value=6 Score=52.01 Aligned_cols=183 Identities=19% Similarity=0.212 Sum_probs=130.2
Q ss_pred hhhhhhhhccChHHHHHHHHHHHHh-hhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhh
Q 000200 288 SGFWEGVKATKWSERKDAVAELTKL-ASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (1871)
Q Consensus 288 ~~f~~~l~s~KWkeRkEaLe~l~~l-~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~ 366 (1871)
.|.+.-|.++|==.||-|+--|+++ ++-|- -..+-+.-|+..|.|.-..|+..|.+.|..||+.=.++|=+.+..
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe----Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ 222 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPE----ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPL 222 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhH----hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHH
Confidence 3678889999999999999999885 44332 123346678888999999999999999999999988887766665
Q ss_pred hHHHH--------------------------HHHhccCCHHHHHH------HHHHHHHHHHhc--------CCChhhhHH
Q 000200 367 LLPVL--------------------------LEKLKEKKPTVAES------LTQTLQAMHKAG--------CLNLVDVVE 406 (1871)
Q Consensus 367 ~~~~l--------------------------LeklKEKK~~V~eA------l~~aLda~~~~~--------~~~l~~~~e 406 (1871)
++--| -.|+=|.=.+..+. +-+|++++.... .-+..-|++
T Consensus 223 ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvq 302 (877)
T KOG1059|consen 223 FYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQ 302 (877)
T ss_pred HHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHH
Confidence 54332 22333333333332 235666665420 011335667
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHH
Q 000200 407 DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE 482 (1871)
Q Consensus 407 ~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~ 482 (1871)
-+-.++..--|++|.-.+.-+...+.++++++. ..-..+++||+|.|+.||=.|... ++-+|.++.+.
T Consensus 303 KLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRlrALdL---l~gmVskkNl~ 370 (877)
T KOG1059|consen 303 KLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRLRALDL---LYGMVSKKNLM 370 (877)
T ss_pred HHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHHHHHHH---HHHHhhhhhHH
Confidence 777888899999999999999999999887654 234568899999999999776555 55666665543
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=89.24 E-value=1.8 Score=59.55 Aligned_cols=202 Identities=16% Similarity=0.168 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHhhhcC--CCCCCChHHHHHHHHHHhc-cccHH-HHHHHHHHHHHHHHHhccccccchhhhHHHHHHHh
Q 000200 300 SERKDAVAELTKLASTK--RIAPGDFTEVCRTLKKLIT-DVNIA-VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL 375 (1871)
Q Consensus 300 keRkEaLe~l~~l~~~p--Ki~~~dy~eL~~~Lkk~l~-DsNv~-vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLekl 375 (1871)
-+|+-|.-.|.-+.+.- -+. .-|-.|...|-+-+. +.+.+ --...++....++.-|+..|.+ ....+|.++...
T Consensus 748 ~errgael~L~~l~~~fg~sl~-~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~ 825 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSLA-AKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFV 825 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHHH-HhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhc
Confidence 46777766666554311 110 012223344444443 33333 5666778888888888888888 888899999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHhcCCC-hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhh
Q 000200 376 KEKKPTVAESLTQTLQAMHKAGCLN-LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (1871)
Q Consensus 376 KEKK~~V~eAl~~aLda~~~~~~~~-l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l 454 (1871)
+--=..||-++..|+..+++..|.. +.-+++.+..-++.----+|.+...-+..++...--..+..+.--+++++..++
T Consensus 826 ~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~m 905 (1549)
T KOG0392|consen 826 RSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRM 905 (1549)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhccc
Confidence 9999999999999999999874322 334456666666655556666666666666654322222233344789999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhChhH-------HHHHhhcCCHHHHHHHHHHHhcC
Q 000200 455 NDGTPEVRDAAFSVLAAIAKSVGMRP-------LERSIEKLDDVRRNKLSEMIAGS 503 (1871)
Q Consensus 455 ~Ds~~~VR~aA~~~l~~lmk~~Ge~~-------l~~~l~~Ld~~kk~KI~e~~~~~ 503 (1871)
.|.+..||++|.++++.++.+++... |-..|-...+.-++-|+.+++.+
T Consensus 906 sd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke~erkFLeqlldps 961 (1549)
T KOG0392|consen 906 SDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKEEERKFLEQLLDPS 961 (1549)
T ss_pred ccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHHHHHHHHHHhcCcc
Confidence 99999999999999999999998543 45555555566677778777754
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.99 E-value=5.6 Score=54.85 Aligned_cols=187 Identities=20% Similarity=0.233 Sum_probs=131.2
Q ss_pred ccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCC---Cccc-hHHHHhhhccc-hhHhHHHHHHHHHHHHHHh
Q 000200 851 SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA---GTGE-LFGGLRGRLYD-SNKNLVMATLITLGAVASA 925 (1871)
Q Consensus 851 s~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~---~~ge-L~~aLk~rl~D-sNk~lv~~al~ii~~lA~a 925 (1871)
.+.|.|=++.=+.|+.=++|-+||+.|-++|.- .+.|.|. .|-| |++.|+.-+.| ++..|-..-+++|+.+|.-
T Consensus 460 LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~-Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t 538 (1431)
T KOG1240|consen 460 LDRVLPYFVHLLMDSEADVRATALETLTELLAL-VRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT 538 (1431)
T ss_pred HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhh-ccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH
Confidence 445677788889999999999999999999963 3555554 3444 77888888899 5555556667888888832
Q ss_pred c------------------------Ch-hHHhh----hhhhhHHHHHHhccCchhHHHHHHHHHHHH---HHhcc-chhh
Q 000200 926 M------------------------GP-AVEKS----SKGVLSDILKCLGDNKKHMRECTLTVLDAW---LAAVH-LDKM 972 (1871)
Q Consensus 926 m------------------------G~-~~~k~----~k~l~~~il~~l~D~K~~vR~aa~~alda~---~~~~g-l~~~ 972 (1871)
. +. .+..+ ..++-.-+.+-|.|+++.||.|.++.+--. +...+ -|-+
T Consensus 539 A~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~i 618 (1431)
T KOG1240|consen 539 AYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVI 618 (1431)
T ss_pred HHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccch
Confidence 1 10 12222 334555668889999999999999986533 33333 4667
Q ss_pred hHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhH-HhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 973 VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 973 ~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p-~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
++.+.++|.+. -+.+|...++=|. .+.-+--.......+.| +...|.|.-+-|=-.|-.+|..+++
T Consensus 619 LshLiTfLNDk--Dw~LR~aFfdsI~-gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 619 LSHLITFLNDK--DWRLRGAFFDSIV-GVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIK 685 (1431)
T ss_pred HHHHHHHhcCc--cHHHHHHHHhhcc-ceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHH
Confidence 88999999754 4678877665443 11111112346778888 5569999999999999888888876
|
|
| >cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain | Back alignment and domain information |
|---|
Probab=88.85 E-value=2.3 Score=44.30 Aligned_cols=92 Identities=18% Similarity=0.237 Sum_probs=67.1
Q ss_pred hccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchh--hhHHHHH
Q 000200 295 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSR--FLLPVLL 372 (1871)
Q Consensus 295 ~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~--~~~~~lL 372 (1871)
..++|+ .+.++-.++.. .+..+.+++++|+++|.+.|..++..|+.++..+.+-=+..|..++. .++..++
T Consensus 14 ~~p~~~----~i~~i~d~~~~---~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~ 86 (115)
T cd00197 14 MGPDWP----LIMEICDLINE---TNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELL 86 (115)
T ss_pred CCCCHH----HHHHHHHHHHC---CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHH
Confidence 345564 44444444432 24568899999999999999999999999999999999999998843 2333332
Q ss_pred HHh-------ccCCHHHHHHHHHHHHHHH
Q 000200 373 EKL-------KEKKPTVAESLTQTLQAMH 394 (1871)
Q Consensus 373 ekl-------KEKK~~V~eAl~~aLda~~ 394 (1871)
+| ++.-.+|++.+.+.+..|+
T Consensus 87 -~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 87 -KFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred -HhhccccccCCCChHHHHHHHHHHHHHh
Confidence 22 2346789999999888885
|
The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=88.52 E-value=0.46 Score=42.57 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHH
Q 000200 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 962 (1871)
Q Consensus 911 lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda 962 (1871)
+...|+..||.++...+..++.|...++|.++..|.|....||.+|..||..
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 4567888999988888999999999999999999999999999999988753
|
... |
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=87.74 E-value=87 Score=40.17 Aligned_cols=193 Identities=18% Similarity=0.230 Sum_probs=127.3
Q ss_pred HHHhh-cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcChhHHhhh
Q 000200 857 TLVKS-LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1871)
Q Consensus 857 ~l~~~-l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl-~DsNk~lv~~al~ii~~lA~amG~~~~k~~ 934 (1871)
.+++- ....++-.|.-+++-+-.++ ||........+++..+...+ ...+......++.++.-+++|+=-.-.+.+
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~Lv---NK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~ 269 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLV---NKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA 269 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHH---cCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence 34433 45556999999999998887 57555554567777777777 677777788899999999988843334667
Q ss_pred hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc--------c--c-----hhhhHHHHHHHhcc--cCCcchHHHHHHHH
Q 000200 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--------H--L-----DKMVPYVTTALTDA--KLGAEGRKDLFDWL 997 (1871)
Q Consensus 935 k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~--------g--l-----~~~~~~i~~~L~~~--~~~p~~r~e~l~wL 997 (1871)
..++..+++.|+| +.+...+..++.-.+... + . ..++..+...|.+. ..+...|..-|.=|
T Consensus 270 ~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~AL 347 (415)
T PF12460_consen 270 TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTAL 347 (415)
T ss_pred HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHH
Confidence 7788889999999 666777777777666541 1 1 11233333333211 01122344444444
Q ss_pred HHHhccCCC---CcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhcc
Q 000200 998 SKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1871)
Q Consensus 998 ~~~l~~~~~---~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~L 1055 (1871)
.--+...+. .+++..+++-++.+|.=.+.+||.++=+.|..++..- .+.+..+++.|
T Consensus 348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sL 407 (415)
T PF12460_consen 348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSL 407 (415)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHH
Confidence 444444443 2455555666888998888899999999999888876 77777776654
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=87.66 E-value=70 Score=40.46 Aligned_cols=314 Identities=16% Similarity=0.208 Sum_probs=184.0
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHh----cCCCccc-hHHHHHHHHHHHHHHHHh---c
Q 000200 609 QLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCM----LPGWSEK-NVQVQQQVIEVINYLAAT---A 674 (1871)
Q Consensus 609 ~L~s~~WK~RL~a~e~l~~~v~~~~~~------~~~~~~lvr~l~~----~Pgwkes-NfqV~~~~leil~~la~~---~ 674 (1871)
||.+++=-.|++||..|...+...+.. ....+++++++.. +++=++. +.++....+..+..+... .
T Consensus 1 qla~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 1 QLAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CCCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 566777778999999999888774322 2224555555543 2333443 777888888888887743 2
Q ss_pred CCCCccchhhhccchhhccccch-hhhHHHHHHHHHHH-hhchHhH----HHHHHHhhhh----cCChhhHHHHHHHHHH
Q 000200 675 TKFPKKCVVLCLLGISERVADIK-TRAHAMKCLTTFSE-AVGPGFI----FERLYKIMKD----HKNPKVLSEGILWMVS 744 (1871)
Q Consensus 675 ~~fs~~~~~~~l~~lveKlgD~K-~r~~a~e~L~~~aE-~~~~~~V----~~~l~~~~~~----~KnPKv~~e~l~wl~~ 744 (1871)
+.++...+..++..+++.+.++. .|..+...|..+++ .+++.++ .++++..+.. -+.-=+..|.|.-+..
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ 160 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKR 160 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence 45666666678888888888875 56777777777776 5666653 3334433322 3345567888888888
Q ss_pred HHHHhccCcc-chHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCC
Q 000200 745 AVEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (1871)
Q Consensus 745 ai~eFG~~~~-~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~ 823 (1871)
.+..|--.-+ ....=++.+-.. +=|+...||+.|+.++-.+-+.+|+.- .+...+.+.|+..-.++
T Consensus 161 ll~q~p~~M~~~~~~W~~~l~~~-l~~~~k~ir~~a~~l~~~~~~~l~~~~---------~~s~~~~~~~~~~~~~~--- 227 (372)
T PF12231_consen 161 LLSQFPQQMIKHADIWFPILFPD-LLSSAKDIRTKAISLLLEAKKCLGPNK---------ELSKSVLEDLQRSLENG--- 227 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHHHHHhChhH---------HHHHHHHHHhccccccc---
Confidence 8877753211 112222233333 668899999999999999988888421 11112222222111000
Q ss_pred CccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCC-CChHHHHHHHHHHHHHHHHcccCCCCC-CccchHHHHh
Q 000200 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRLESIEAVNKILEEANKRIQPA-GTGELFGGLR 901 (1871)
Q Consensus 824 p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d-~~WK~RkEaLe~v~~il~~ankrI~p~-~~geL~~aLk 901 (1871)
+. -.-+.+.+.+-+.+ .+.+.=-..=-.+-.++. ++++.-. .+++.+....
T Consensus 228 --~~-----------------------~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~--~~~~~~w~~~n~wL~v~e 280 (372)
T PF12231_consen 228 --KL-----------------------IQLYCERLKEMIKSKDEYKLAMQIWSVVILLLG--SSRLDSWEHLNEWLKVPE 280 (372)
T ss_pred --cH-----------------------HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhC--CchhhccHhHhHHHHHHH
Confidence 00 00011111122222 111111111112333332 2333332 2477888888
Q ss_pred hhccchhHhHHHHHHHHHHHHHHhcChhH---HhhhhhhhHHHHHHhccCch-----hHHHHHHHHHHH
Q 000200 902 GRLYDSNKNLVMATLITLGAVASAMGPAV---EKSSKGVLSDILKCLGDNKK-----HMRECTLTVLDA 962 (1871)
Q Consensus 902 ~rl~DsNk~lv~~al~ii~~lA~amG~~~---~k~~k~l~~~il~~l~D~K~-----~vR~aa~~alda 962 (1871)
..++.+|..+...|+.+=..+.-++.+.- .+..+.+..|+...+.-.+. .+|.+++.++..
T Consensus 281 ~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ 349 (372)
T PF12231_consen 281 KCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCN 349 (372)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhc
Confidence 89999999999999988888887776543 46688888999887765443 456666665543
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.56 E-value=19 Score=47.33 Aligned_cols=268 Identities=16% Similarity=0.173 Sum_probs=153.3
Q ss_pred hHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhh-CchhH
Q 000200 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFV-GPDIK 795 (1871)
Q Consensus 717 ~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~-G~~l~ 795 (1871)
+++..+.-. .....+.|+..++.-|-++=+ |++ -.|.+..-++++ +...+-.||.+|++|+-..-.-. |+--+
T Consensus 198 ~~~~~l~~~-~~~~D~~Vrt~A~eglL~L~e--g~k--L~~~~Y~~A~~~-lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 198 HAARGLIYL-EHDQDFRVRTHAVEGLLALSE--GFK--LSKACYSRAVKH-LSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHH-hcCCCcchHHHHHHHHHhhcc--ccc--ccHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 344443333 567788888877777665544 654 236677778888 99999999999998774432221 22100
Q ss_pred ----------------------------------hhhhcch-HHHHHHHHHHHhcCCCCCCCCCcccccccccc------
Q 000200 796 ----------------------------------GFLADVK-PALLSALDAEYEKNPFEGTVVPKKTVRASEST------ 834 (1871)
Q Consensus 796 ----------------------------------~~l~dlk-pall~~ie~EF~K~~~~~~p~p~R~~r~~~~~------ 834 (1871)
.-|+.+. .-+.++|+++....-.....+-+|+.+--+++
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCc
Confidence 0111111 12344444443321110011111110000000
Q ss_pred ---CCCCCCCCCCCCccccccC-CcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHh
Q 000200 835 ---SSVSSGGSDGLPREDISGK-FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKN 910 (1871)
Q Consensus 835 ---~~~~~~~~d~lprvDIs~k-it~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~ 910 (1871)
.++++.. |.-..+.|-.. --..|+..++|.=.-+|..|++.+..+-.. + |+--..-+.-|-..|+|----
T Consensus 352 ~~~advpsee-~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s---s--P~FA~~aldfLvDMfNDE~~~ 425 (823)
T KOG2259|consen 352 EWNADVPSEE-DDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS---S--PGFAVRALDFLVDMFNDEIEV 425 (823)
T ss_pred cccccCchhh-ccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC---C--CCcHHHHHHHHHHHhccHHHH
Confidence 0000000 00111111110 114678888999999999999999888752 2 222234556677788888888
Q ss_pred HHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHH--HHhccchhhhHHHHHHHhcccCCcc
Q 000200 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAW--LAAVHLDKMVPYVTTALTDAKLGAE 988 (1871)
Q Consensus 911 lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~--~~~~gl~~~~~~i~~~L~~~~~~p~ 988 (1871)
|--.|+..+..|+.-+ +-..-.++.|+++|-|.-..||+++.+-|-.. .+..+++.++..+...|+ + =|+
T Consensus 426 VRL~ai~aL~~Is~~l-----~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~--k-yPq 497 (823)
T KOG2259|consen 426 VRLKAIFALTMISVHL-----AIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLG--K-YPQ 497 (823)
T ss_pred HHHHHHHHHHHHHHHh-----eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh--h-CCC
Confidence 8888888888888762 23345688999999999999999999877643 233345555555555555 2 366
Q ss_pred hHHHHHHHHHHHhccC
Q 000200 989 GRKDLFDWLSKQLTGL 1004 (1871)
Q Consensus 989 ~r~e~l~wL~~~l~~~ 1004 (1871)
-|-|+|+-+.+-=.++
T Consensus 498 Drd~i~~cm~~iGqnH 513 (823)
T KOG2259|consen 498 DRDEILRCMGRIGQNH 513 (823)
T ss_pred CcHHHHHHHHHHhccC
Confidence 7888888776543333
|
|
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=86.85 E-value=3.4 Score=45.07 Aligned_cols=74 Identities=18% Similarity=0.250 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHHHhcc-CCHHHHHHHHHHHHHHHHh
Q 000200 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKLKE-KKPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 323 y~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~lLeklKE-KK~~V~eAl~~aLda~~~~ 396 (1871)
=.+.+++|+++|...|.+|+..|+..++.+.+-=|+.|... .+-++..|..-+.+ .-+.|++-+...+..|...
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999866 45666666666666 5778888888888888764
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.64 E-value=36 Score=45.70 Aligned_cols=135 Identities=20% Similarity=0.252 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHh------
Q 000200 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA------ 396 (1871)
Q Consensus 323 y~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~------ 396 (1871)
..++...|+..-.|-.+..|..|++|||.+|-...+. ..|+..+|+-+.=|..-|++.+.-.+.-++.+
T Consensus 348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~ 422 (734)
T KOG1061|consen 348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYE 422 (734)
T ss_pred HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchh
Confidence 4557888888888999999999999999999988765 45777777777766665555544444444333
Q ss_pred -----cCCC--------------------------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhh
Q 000200 397 -----GCLN--------------------------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (1871)
Q Consensus 397 -----~~~~--------------------------l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~ 445 (1871)
.|.+ ..++++++.+.++...++|+.+.+.=..|+|-..++.+- +.
T Consensus 423 ~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq----~~ 498 (734)
T KOG1061|consen 423 SVVAILCENLDSLQEPEAKAALIWILGEYAERIENALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTETQ----EL 498 (734)
T ss_pred hhhhhhcccccccCChHHHHHHHHHHhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHH----HH
Confidence 1111 224567778888888899999998888888866554322 23
Q ss_pred hHHHHHhhhCCCC-HHHHHHHH
Q 000200 446 YVPICMECLNDGT-PEVRDAAF 466 (1871)
Q Consensus 446 ~~~~l~k~l~Ds~-~~VR~aA~ 466 (1871)
+...|--+.+|++ +++||.+.
T Consensus 499 l~~vL~~~~~d~~~~dlrDr~l 520 (734)
T KOG1061|consen 499 LQGVLPLATADTDNPDLRDRGL 520 (734)
T ss_pred HHHHHhhhhccccChhhhhhHH
Confidence 3445556666664 59999987
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=86.33 E-value=40 Score=40.59 Aligned_cols=138 Identities=19% Similarity=0.279 Sum_probs=104.0
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHhhhc---cchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhh
Q 000200 608 GQLKSAVWKERLEAISSLRQQVEAVQN---LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (1871)
Q Consensus 608 ~~L~s~~WK~RL~a~e~l~~~v~~~~~---~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~ 684 (1871)
.-|.+.++..|-.|++-|...++..+. .....++|+.++..+ +.| ..++...+..+..++ +...|+...+..
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~r--l~D--~~~~~~~l~gl~~L~-~~~~~~~~~~~~ 80 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSR--LDD--HACVQPALKGLLALV-KMKNFSPESAVK 80 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHH--hcc--HhhHHHHHHHHHHHH-hCcCCChhhHHH
Confidence 467889999999999999988888543 234568888888753 433 234444477778777 468899999888
Q ss_pred hccchhhccccc----hhhhHHHHHHHHHHHhh-------chHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhcc
Q 000200 685 CLLGISERVADI----KTRAHAMKCLTTFSEAV-------GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 751 (1871)
Q Consensus 685 ~l~~lveKlgD~----K~r~~a~e~L~~~aE~~-------~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~ 751 (1871)
++..+.+++... +.|-.+-++|..+.+.. +.+||. .++..+-.-|.|+..--++..+..++.+|-+
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~-~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVY-GFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHH-HHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 999988877664 46888888888887764 556665 4445557799999999999999888887664
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.26 E-value=68 Score=41.94 Aligned_cols=362 Identities=17% Similarity=0.161 Sum_probs=206.9
Q ss_pred cHHHHhhcCCCChHHHHHHHHHHHHHHH-HcccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcChhHHh
Q 000200 855 TPTLVKSLESPDWKVRLESIEAVNKILE-EANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEK 932 (1871)
Q Consensus 855 t~~l~~~l~d~~WK~RkEaLe~v~~il~-~ankrI~p~~~geL~~aLk~rl-~DsNk~lv~~al~ii~~lA~amG~~~~k 932 (1871)
....+..+.+.+=..+.++..+.-+++. +-|+.|..-.-..+++-|-.-| .+.|-.+.--|+-+++.||.+---.-.-
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 3456677777787889999999999996 3345544433223444444445 5778888999999999998765433333
Q ss_pred hhh-hhhHHHHHHhccCchhHHHHHHHHHHHHHHhc-cc-hhhhH-----HHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000200 933 SSK-GVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-HL-DKMVP-----YVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1871)
Q Consensus 933 ~~k-~l~~~il~~l~D~K~~vR~aa~~alda~~~~~-gl-~~~~~-----~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~ 1004 (1871)
++. ..+|-++..|......||+-|.-||--++... .+ +-++. .+...+.....-..+| -+.|.-..|...
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lR--n~tW~LsNlcrg 225 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLR--NATWTLSNLCRG 225 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHH--HHHHHHHHHHcC
Confidence 332 46788999999999999999998887665432 22 22222 2222222221001222 367888888877
Q ss_pred CC-Ccc---hhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCC
Q 000200 1005 SG-FPD---AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPT 1080 (1871)
Q Consensus 1005 ~~-~~~---~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~~~~~~~~ 1080 (1871)
+. .|. ...++..+..+|.+.+++|..-|.-+|.++--+- .|...-- ++-.....+++.|....++...|+-
T Consensus 226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~-ne~iq~v---i~~gvv~~LV~lL~~~~~~v~~PaL- 300 (514)
T KOG0166|consen 226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS-NEKIQMV---IDAGVVPRLVDLLGHSSPKVVTPAL- 300 (514)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHHHHHH---HHccchHHHHHHHcCCCcccccHHH-
Confidence 64 332 3445555777999999999998888887765422 1211111 1123344555555554321100000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhc---------ccCC-CChHHHHhhhhccc
Q 000200 1081 SKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALL---------NVKD-SNKEDRERMVVRRF 1150 (1871)
Q Consensus 1081 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~K~~R~~~~~~kw 1150 (1871)
..-++ ++ .| .+.+++.++ .... +.|+ -+|+-. =|
T Consensus 301 ---------------RaiGN-------Iv-tG-----------~d~QTq~vi~~~~L~~l~~ll~~s~~~-~ikkEA-cW 344 (514)
T KOG0166|consen 301 ---------------RAIGN-------IV-TG-----------SDEQTQVVINSGALPVLSNLLSSSPKE-SIKKEA-CW 344 (514)
T ss_pred ---------------hhccc-------ee-ec-----------cHHHHHHHHhcChHHHHHHHhccCcch-hHHHHH-HH
Confidence 00000 00 00 012222111 0011 1111 011111 15
Q ss_pred cc---cCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHh--HHHHHHHHHHhccccch
Q 000200 1151 KF---EDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV--LDILLRWFVLQFCKSNT 1225 (1871)
Q Consensus 1151 ~f---~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~~--lDlllkw~tlr~~dtN~ 1225 (1871)
.. +.-..+|++.. |...+=+.|+..|-+.||+-+-+|.=.+.-...+-..+.|.- -.-+++-++-.+.-.++
T Consensus 345 ~iSNItAG~~~qiqaV---ida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~ 421 (514)
T KOG0166|consen 345 TISNITAGNQEQIQAV---IDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDV 421 (514)
T ss_pred HHHHhhcCCHHHHHHH---HHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCCh
Confidence 43 44455666666 888999999999999999988888877776655444443320 11144555445555788
Q ss_pred HHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCC
Q 000200 1226 TCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 1267 (1871)
Q Consensus 1226 ~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd 1267 (1871)
.++..+||-+..+|.+-.... .+.. .-+..+|+..|-
T Consensus 422 ~ii~v~Ld~l~nil~~~e~~~-~~~~----n~~~~~IEe~gg 458 (514)
T KOG0166|consen 422 KIILVALDGLENILKVGEAEK-NRGT----NPLAIMIEEAGG 458 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cccc----cHHHHHHHHccC
Confidence 889999999998777643332 1111 455677777764
|
|
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=85.70 E-value=5.8 Score=43.10 Aligned_cols=96 Identities=14% Similarity=0.186 Sum_probs=75.1
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~l 371 (1871)
+.+.+|.-=.|.-|.+. +. +..-.+-+++|+++|...|.+|+..|+..++.+.+-=|..|... .+-++..|
T Consensus 14 l~~~dw~~ileicD~In---~~----~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el 86 (139)
T cd03567 14 NREEDWEAIQAFCEQIN---KE----PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNEL 86 (139)
T ss_pred CCCCCHHHHHHHHHHHH---cC----CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHH
Confidence 45677765444444432 11 22245899999999999999999999999999999999999876 46788888
Q ss_pred HHHhccC------CHHHHHHHHHHHHHHHHh
Q 000200 372 LEKLKEK------KPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 372 LeklKEK------K~~V~eAl~~aLda~~~~ 396 (1871)
+..+..| -..|++-+.+.+..|...
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 87 IKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 8888653 478999999999999865
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=85.67 E-value=4.3 Score=43.95 Aligned_cols=75 Identities=27% Similarity=0.336 Sum_probs=64.2
Q ss_pred ChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHHHhccCCHH----HHHHHHHHHHHHHH
Q 000200 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKLKEKKPT----VAESLTQTLQAMHK 395 (1871)
Q Consensus 322 dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~lLeklKEKK~~----V~eAl~~aLda~~~ 395 (1871)
.-.+.+++|+++|...|.+++..|+..++.+.+--|..|... .+-++..|..-++.++.. |++-+.+.+..|..
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 347999999999999999999999999999999999999766 455777777767766665 79999999999987
Q ss_pred h
Q 000200 396 A 396 (1871)
Q Consensus 396 ~ 396 (1871)
.
T Consensus 119 ~ 119 (140)
T PF00790_consen 119 A 119 (140)
T ss_dssp H
T ss_pred H
Confidence 6
|
Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A .... |
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=85.64 E-value=1.7e+02 Score=42.57 Aligned_cols=134 Identities=19% Similarity=0.258 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHhccccchH------HHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCC-ChHHHHHHHHHHH
Q 000200 1208 VLDILLRWFVLQFCKSNTT------CLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH-NIEKVREKMRELT 1280 (1871)
Q Consensus 1208 ~lDlllkw~tlr~~dtN~~------vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd-~k~~vR~~vr~i~ 1280 (1871)
.++|+...+....-+-++- --.+.+.|+..||-.-.-.-.-|+---+..+.|||..|+-. ....|-..|-.|+
T Consensus 1025 ~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Il 1104 (1692)
T KOG1020|consen 1025 VLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQIL 1104 (1692)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHH
Confidence 4666666665554443322 23467888888887777777777767888999999999422 3334445555666
Q ss_pred HH-HhhccCccchHHH-----HHhhhccCChhhHhHHHHHHHHHHHh--hcCcc---cCc--cchHHHHHHHhc
Q 000200 1281 KQ-IVNFYSATKTLPY-----ILEGLRSKNNRTRIECVDLVGFLIDH--HGAEI---SGQ--LKSLQIVASLTA 1341 (1871)
Q Consensus 1281 ~~-~~~vyp~skvf~~-----l~~glksKN~r~R~Ecl~el~~li~~--~G~~v---~~~--~Kal~~ia~~i~ 1341 (1871)
+. ++++--+|--|-+ ||.-+-.-|-++=.||..-||.+..+ +|+.+ |.. .|.|+.+.+...
T Consensus 1105 e~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~ 1178 (1692)
T KOG1020|consen 1105 ECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNN 1178 (1692)
T ss_pred HHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 43 3344334444443 23344556778899999999999996 88776 333 466677666543
|
|
| >KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.38 E-value=2.8 Score=53.78 Aligned_cols=97 Identities=18% Similarity=0.268 Sum_probs=77.6
Q ss_pred hhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHH
Q 000200 293 GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (1871)
Q Consensus 293 ~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~ 370 (1871)
.+...+|--=.|.=|.+..--..+| |.+++|||+|+..|-.|+.+|+..|+.+.+--|..|... .+-|+..
T Consensus 13 ~l~~pDWa~NleIcD~IN~~~~~~~-------eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~e 85 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINSTEGGPK-------EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNE 85 (470)
T ss_pred cccCccHHHHHHHHHHHhcCccCcH-------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4566777655554444433222333 999999999998888999999999999999999999866 6789999
Q ss_pred HHHHhccC--CHHHHHHHHHHHHHHHHh
Q 000200 371 LLEKLKEK--KPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 371 lLeklKEK--K~~V~eAl~~aLda~~~~ 396 (1871)
|+.++|.+ =..|++-+...|++|...
T Consensus 86 mVk~~k~~~~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 86 MVKRPKNKPRDLKVREKILELIDTWQQA 113 (470)
T ss_pred HHhccccCCcchhHHHHHHHHHHHHHHH
Confidence 99999988 456899999999999875
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.38 E-value=21 Score=43.95 Aligned_cols=177 Identities=18% Similarity=0.220 Sum_probs=121.0
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhH
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~ 368 (1871)
.....+.+.+|-.|..+...+..+ +--+.+..|.+.+.|.+..|...|+.+++.+ .. ...+
T Consensus 47 ~~~~~l~~~~~~vr~~aa~~l~~~---------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~-------~~---~~a~ 107 (335)
T COG1413 47 ELLKLLEDEDLLVRLSAAVALGEL---------GSEEAVPLLRELLSDEDPRVRDAAADALGEL-------GD---PEAV 107 (335)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhhh---------chHHHHHHHHHHhcCCCHHHHHHHHHHHHcc-------CC---hhHH
Confidence 455667888999999988774332 2346789999999999999999998855543 22 3456
Q ss_pred HHHHHHhc-cCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchh------------HHHHHHHHHHHHhhCC
Q 000200 369 PVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLV------------RSLTLNWVTFCIETSS 435 (1871)
Q Consensus 369 ~~lLeklK-EKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~v------------k~etl~~L~r~l~~~~ 435 (1871)
+++++.+. |-...||..+..+|-.+... ..++.+...+++.+..+ |.....=|. ...
T Consensus 108 ~~li~~l~~d~~~~vR~~aa~aL~~~~~~------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~----~~~ 177 (335)
T COG1413 108 PPLVELLENDENEGVRAAAARALGKLGDE------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALG----ELG 177 (335)
T ss_pred HHHHHHHHcCCcHhHHHHHHHHHHhcCch------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHH----HcC
Confidence 77777777 79999999888888766443 34777888888877433 211111111 111
Q ss_pred hhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHh--ChhHHHHHhhcCCHHHHHHHHHHHh
Q 000200 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV--GMRPLERSIEKLDDVRRNKLSEMIA 501 (1871)
Q Consensus 436 ~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~--Ge~~l~~~l~~Ld~~kk~KI~e~~~ 501 (1871)
.....+.+...++|....||.+|..+|+.+-... ....+...+++-+...+.+.-..+.
T Consensus 178 -------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~ 238 (335)
T COG1413 178 -------DPEAIPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLVKALSDESLEVRKAALLALG 238 (335)
T ss_pred -------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHHHHHHHHhcCCCHHHHHHHHHHhc
Confidence 1335678889999999999999999999887763 3345666666666555555554443
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.70 E-value=2e+02 Score=40.58 Aligned_cols=206 Identities=15% Similarity=0.091 Sum_probs=119.5
Q ss_pred CCcccccCCCCchhhhhhhh--ccChHHH----HHHHHHHHHhhhcCCCCC--CChHHHHHHHHHHhc-ccc-HHHHHHH
Q 000200 276 VDPVDILTPLEKSGFWEGVK--ATKWSER----KDAVAELTKLASTKRIAP--GDFTEVCRTLKKLIT-DVN-IAVAVEA 345 (1871)
Q Consensus 276 ~~~vdIl~klpk~~f~~~l~--s~KWkeR----kEaLe~l~~l~~~pKi~~--~dy~eL~~~Lkk~l~-DsN-v~vv~~A 345 (1871)
+.+-|+.+++ ..|.+.+- .+-|..| .--|..+.++.+.-+-.. +--+...+.|..... |.| ..+--+-
T Consensus 203 ~sR~D~~~~~--~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrKll 280 (1133)
T KOG1943|consen 203 FSRTDVKDLL--LSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRKLL 280 (1133)
T ss_pred cccccHHHHH--HHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHHHH
Confidence 3444555555 35777752 3678888 344555555554333221 112345666666654 555 5666677
Q ss_pred HHHHHHHHHHhccc----------------------c------------------ccchhhhHHHHHHHhccCCHHHHHH
Q 000200 346 IQAIGNLARGLRTH----------------------F------------------SGSSRFLLPVLLEKLKEKKPTVAES 385 (1871)
Q Consensus 346 ~~~i~~lA~gLr~~----------------------F------------------~~y~~~~~~~lLeklKEKK~~V~eA 385 (1871)
.+|++.|.--.=++ | .-++..++--+|+-++|+-..||=+
T Consensus 281 vKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWS 360 (1133)
T KOG1943|consen 281 VKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWS 360 (1133)
T ss_pred HHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCcchhhHH
Confidence 78877554221111 1 1334578888999999999999999
Q ss_pred HHHHHHHHHHhcCCChhhhHHHHHH-HhhcCCch----hHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCC----
Q 000200 386 LTQTLQAMHKAGCLNLVDVVEDVKT-SVKNKVPL----VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLND---- 456 (1871)
Q Consensus 386 l~~aLda~~~~~~~~l~~~~e~i~~-al~~KnP~----vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~D---- 456 (1871)
+.+.+--+... .+ .++.|+++. .+.+=||. .=-.++.+|+..-..- -.+...+..++|.+++.+.=
T Consensus 361 aAKg~grvt~r--lp-~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG--lLlps~l~dVvplI~kaL~Yd~~~ 435 (1133)
T KOG1943|consen 361 AAKGLGRVTSR--LP-PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG--LLLPSLLEDVVPLILKALHYDVRR 435 (1133)
T ss_pred HHHHHHHHHcc--Cc-HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhhhhhhh
Confidence 99988888765 34 333333332 22234443 2223444444332110 11123347889999988832
Q ss_pred ----CCHHHHHHHHHHHHHHHHHhChhHHHHHhhcC
Q 000200 457 ----GTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 488 (1871)
Q Consensus 457 ----s~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~L 488 (1871)
.-.-|||||+-.+=++.+.-....|.+++..|
T Consensus 436 G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L 471 (1133)
T KOG1943|consen 436 GQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSL 471 (1133)
T ss_pred cccccccchHHHHHHHHHHHHhcCChhhhhHHHHHH
Confidence 23569999999888888776666666665544
|
|
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=84.38 E-value=5 Score=43.17 Aligned_cols=75 Identities=24% Similarity=0.290 Sum_probs=61.3
Q ss_pred ChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHHHhccCCH--HHHHHHHHHHHHHHHh
Q 000200 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKLKEKKP--TVAESLTQTLQAMHKA 396 (1871)
Q Consensus 322 dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~lLeklKEKK~--~V~eAl~~aLda~~~~ 396 (1871)
.=.+.+++|+++|...|.+++..|+..++.+.+-=|..|... .+-++..|...++.+.. .|++-+...+..|...
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999766 34466655555555443 2899999999999875
|
Unpublished observations. Domain of unknown function. |
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.93 E-value=1.3e+02 Score=41.78 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=64.7
Q ss_pred hccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHh-cCCChhhhHH
Q 000200 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVE 406 (1871)
Q Consensus 334 l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~-~~~~l~~~~e 406 (1871)
..-||+--+-..+..||.+|.-+|..|.++.-.++=++++++...-+.|...+..|+-+|+.. ++-+++.++.
T Consensus 557 ~~kSnv~~~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~ 630 (1014)
T KOG4524|consen 557 IKKSNEFAVCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIR 630 (1014)
T ss_pred hhccchhhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 347888888999999999999999999999999999999999999999999999999999987 3345666653
|
|
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=82.64 E-value=32 Score=42.73 Aligned_cols=155 Identities=17% Similarity=0.141 Sum_probs=99.3
Q ss_pred ChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHH----h
Q 000200 322 DFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHK----A 396 (1871)
Q Consensus 322 dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~----~ 396 (1871)
.-..++..|..++. ++|=.....++.++..=...++..+ -..++..+..-|+|||+.||.+-..++-.++. .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~---~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~ 95 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL---PKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNS 95 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC---CHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCc
Confidence 45788999999998 9999999999988888887774333 36677888889999999999887777766654 1
Q ss_pred cCC-ChhhhHHHHHHH----hhcCCch---------------------------------------------------hH
Q 000200 397 GCL-NLVDVVEDVKTS----VKNKVPL---------------------------------------------------VR 420 (1871)
Q Consensus 397 ~~~-~l~~~~e~i~~a----l~~KnP~---------------------------------------------------vk 420 (1871)
... -+.++++.+.+. ..+..|. .-
T Consensus 96 ~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~ 175 (339)
T PF12074_consen 96 DSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLAS 175 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCC
Confidence 011 122333333333 3333332 12
Q ss_pred HHHHHHHHHHHhhCChh----HHHHhhhhhHHHHHhhhCCC--CHHHHHHHHHHHHHHHHHhChh
Q 000200 421 SLTLNWVTFCIETSSKA----AVLKVHKDYVPICMECLNDG--TPEVRDAAFSVLAAIAKSVGMR 479 (1871)
Q Consensus 421 ~etl~~L~r~l~~~~~~----~~~~~~k~~~~~l~k~l~Ds--~~~VR~aA~~~l~~lmk~~Ge~ 479 (1871)
.+.+.|+.|.++..-.. ........+.-.++-++-.+ ..+||..|..++..++..-++.
T Consensus 176 ~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 176 EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 23344444444321100 00000234566677778788 8999999999999988876654
|
This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM. |
| >KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.57 E-value=7.4 Score=47.96 Aligned_cols=111 Identities=16% Similarity=0.319 Sum_probs=85.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHh--hhhhhhH
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK--SSKGVLS 939 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k--~~k~l~~ 939 (1871)
....||-.=.+.-|.|. + .|.+.-|-+++|.+||.-.+.+|+.+||++++.++.-+|+.|.+ .+|.|..
T Consensus 21 nT~enW~~IlDvCD~v~------~---~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~ 91 (462)
T KOG2199|consen 21 NTSENWSLILDVCDKVG------S---DPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTT 91 (462)
T ss_pred cccccHHHHHHHHHhhc------C---CCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHH
Confidence 34557876555555442 1 22444699999999999999999999999999999999999986 4778888
Q ss_pred HHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000200 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1871)
Q Consensus 940 ~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1871)
.+...+.+ .-+.|++.....+..|.+.+.=|.-+.-|.+..+
T Consensus 92 el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~lsLi~~l~~ 134 (462)
T KOG2199|consen 92 ELRALIESKAHPKVCEKMRDLVKEWSEEFKKDPSLSLISALYK 134 (462)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 88888885 4457999999999999997766665555554443
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=82.56 E-value=36 Score=41.57 Aligned_cols=164 Identities=20% Similarity=0.288 Sum_probs=96.9
Q ss_pred HHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCCh----hhhhHhHHHHHHHHHHhccccchHHHHHHhhhhHH
Q 000200 1162 ELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIR----KDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPE 1237 (1871)
Q Consensus 1162 ~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~----~~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~ 1237 (1871)
.+++||..-+ +.+..+|||.|...++.|.--+.+.+.-.. ..+|. +-.+-|+
T Consensus 64 ~meqq~~~el-p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VId-aGvVpRf---------------------- 119 (526)
T COG5064 64 PMEQQFYSEL-PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVID-AGVVPRF---------------------- 119 (526)
T ss_pred chhHHhhhhh-HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHh-ccccHHH----------------------
Confidence 4667776656 889999999999999999988888775322 11222 1122222
Q ss_pred HHHHHHhcCCcccHhHHhh--------------------hhhHHHHhhCCChHHHHHHHHHHHHHHhhccCccchHH-HH
Q 000200 1238 LFDTLRDEGYSLTESEAAV--------------------FLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLP-YI 1296 (1871)
Q Consensus 1238 l~~~l~~~~y~lsd~Ea~~--------------------flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~skvf~-~l 1296 (1871)
++.|.+.+-.|-+.||+- -+|.+|.-+-++.+.||+.. .=.+..|-..|-.+. |+
T Consensus 120 -vefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQa---vWALGNiAGDS~~~RD~v 195 (526)
T COG5064 120 -VEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQA---VWALGNIAGDSEGCRDYV 195 (526)
T ss_pred -HHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHH---HHHhccccCCchhHHHHH
Confidence 333445555556666654 47999999999888888742 334444444444443 44
Q ss_pred Hh--------hhccCChh--hHhHHHHHH-HHHHHhhcCcccCc-----cchHHHHHHHhccCChhHHHHHHHHHH
Q 000200 1297 LE--------GLRSKNNR--TRIECVDLV-GFLIDHHGAEISGQ-----LKSLQIVASLTAERDGEIRKAALNTLA 1356 (1871)
Q Consensus 1297 ~~--------glksKN~r--~R~Ecl~el-~~li~~~G~~v~~~-----~Kal~~ia~~i~drD~~VR~AALn~l~ 1356 (1871)
++ |+=.-|++ .-.--+.|. +.|- .|-+. .| .++|+.++|+|-.||+.|---|.=++.
T Consensus 196 L~~galeplL~ll~ss~~~ismlRn~TWtLSNlc--RGknP-~P~w~~isqalpiL~KLiys~D~evlvDA~WAiS 268 (526)
T COG5064 196 LQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC--RGKNP-PPDWSNISQALPILAKLIYSRDPEVLVDACWAIS 268 (526)
T ss_pred HhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh--CCCCC-CCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 43 22111211 011112221 2221 24332 22 478999999999999998777766555
|
|
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=82.55 E-value=7.2 Score=42.49 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=71.2
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~l 371 (1871)
+.+.+|.-=.|.-|.+.. .+..=.|.+++|+++|...|.+++..|+..++.+.+--|..|... .+-++..|
T Consensus 17 l~~~dw~~ileicD~In~-------~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l 89 (142)
T cd03569 17 LGEPDLASILEICDMIRS-------KDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDEL 89 (142)
T ss_pred cCccCHHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHH
Confidence 355677655555554421 123346899999999999999999999999999999999998764 45566666
Q ss_pred HHHhc-cCCHHHHHHHHHHHHHHHHh
Q 000200 372 LEKLK-EKKPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 372 LeklK-EKK~~V~eAl~~aLda~~~~ 396 (1871)
..-+. ...+.|++-+...+..|...
T Consensus 90 ~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 90 KDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 65554 34556888888888888765
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.29 E-value=1e+02 Score=42.58 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=58.9
Q ss_pred hhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchh
Q 000200 907 SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDK 971 (1871)
Q Consensus 907 sNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~ 971 (1871)
||.-=+-.++.-||.+|..||..|..+.-..+-+++..+++.-+.++..|..|+-+++.+|+++.
T Consensus 560 Snv~~~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s 624 (1014)
T KOG4524|consen 560 SNEFAVCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGS 624 (1014)
T ss_pred cchhhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 55555567888999999999999999999999999999999999999999999999999998744
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=82.22 E-value=61 Score=43.40 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhc
Q 000200 322 DFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLR 357 (1871)
Q Consensus 322 dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr 357 (1871)
+..++++.||..++ .-..++|..-=+-+-.+|++|-
T Consensus 208 ~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~ald 244 (1102)
T KOG1924|consen 208 NLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALD 244 (1102)
T ss_pred HHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcC
Confidence 44566666666665 5555555444444444555543
|
|
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=82.12 E-value=10 Score=40.83 Aligned_cols=96 Identities=19% Similarity=0.237 Sum_probs=71.6
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc-hh-hhHHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SR-FLLPVL 371 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y-~~-~~~~~l 371 (1871)
+.+.+|.-=.|.-|.+.. .+.+=.+.+++|+++|...|.+++..|+.+++.+.+--|+.|... +. -++..|
T Consensus 13 ~~~~D~~~il~icd~I~~-------~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l 85 (133)
T cd03561 13 LEEPDWALNLELCDLINL-------KPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLEL 85 (133)
T ss_pred cCCccHHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHH
Confidence 345667554444443321 144457899999999999999999999999999999999999766 32 566666
Q ss_pred HHHhccC---CHHHHHHHHHHHHHHHHh
Q 000200 372 LEKLKEK---KPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 372 LeklKEK---K~~V~eAl~~aLda~~~~ 396 (1871)
..-+..+ .+.|++-+.+.+..|..+
T Consensus 86 ~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 86 VKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 6666653 567888888888888775
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.37 E-value=2.2e+02 Score=38.70 Aligned_cols=112 Identities=14% Similarity=0.169 Sum_probs=79.7
Q ss_pred HHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHh
Q 000200 1173 EDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES 1252 (1871)
Q Consensus 1173 ~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~ 1252 (1871)
=+++.-|-+.|+--+=++++...+...+..-+-| +-++-.++.+||..-.-+.-.|=+.|+..+-...-.+.|+
T Consensus 320 mDvLrvLss~dldvr~Ktldi~ldLvssrNvedi------v~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~ 393 (948)
T KOG1058|consen 320 MDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDI------VQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV 393 (948)
T ss_pred HHHHHHcCcccccHHHHHHHHHHhhhhhccHHHH------HHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH
Confidence 3666777788888888888877776655332222 1344556778876666666677777777777777788876
Q ss_pred HHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhhccCccc
Q 000200 1253 EAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATK 1291 (1871)
Q Consensus 1253 Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~sk 1291 (1871)
|+..+|+|++-+||.++..-..|-..++..-..||.-|
T Consensus 394 -aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr 431 (948)
T KOG1058|consen 394 -AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR 431 (948)
T ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH
Confidence 56678999999999888887777777777766776444
|
|
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=81.30 E-value=35 Score=41.99 Aligned_cols=147 Identities=12% Similarity=0.137 Sum_probs=106.8
Q ss_pred ccChHHHHHHHHHHHHhhh--cCCCCC-CChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccc-cccchhhhHHH
Q 000200 296 ATKWSERKDAVAELTKLAS--TKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPV 370 (1871)
Q Consensus 296 s~KWkeRkEaLe~l~~l~~--~pKi~~-~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~-F~~y~~~~~~~ 370 (1871)
.+.|-|=-..|..|.+.++ ++.+.- .+=..+.+.|.++++ ---.-|=..|+++.+.|=+.+|+. +.+...++
T Consensus 22 ~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~--- 98 (307)
T PF04118_consen 22 SSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIY--- 98 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHH---
Confidence 5778888888888888666 444432 333467777777777 555666677777777777776643 33333333
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHH
Q 000200 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (1871)
Q Consensus 371 lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l 450 (1871)
...+...+.+-.-+||-..+..+.+.+-..++ .+..+++.++..+
T Consensus 99 ----------------------------------~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~sl 143 (307)
T PF04118_consen 99 ----------------------------------SPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSL 143 (307)
T ss_pred ----------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHh
Confidence 34455566666667888888888877765555 5556678899999
Q ss_pred HhhhCCCCHHHHHHHHHHHHHHHHHhChhH
Q 000200 451 MECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1871)
Q Consensus 451 ~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~ 480 (1871)
+.+++|...|+-+.....|..+...+|.+.
T Consensus 144 LpGLede~sE~~~~~~~ll~~l~~~v~~~~ 173 (307)
T PF04118_consen 144 LPGLEDEGSEFFDRTLKLLDKLKEAVGDKY 173 (307)
T ss_pred ccccccCCchHHHHHHHHHHHHHHhcChhH
Confidence 999999999999999999999999999883
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=81.22 E-value=16 Score=44.68 Aligned_cols=125 Identities=18% Similarity=0.268 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHcChhhhhh--hhHHHHHHHHhhhcC-ChhhHHHHHHHHHHHHhhcc--hhhHHHHHHHHhhccCchhHH
Q 000200 72 ALDALIAYLKAADADAGRY--AKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEA--VDVFLDVMEKAIKNKVAKAVV 146 (1871)
Q Consensus 72 ~leal~~~l~~a~~~~~~~--~~~~~~~lveK~L~~-r~~tk~~a~e~~l~~vE~e~--~~~v~e~ll~~~~~K~PKvva 146 (1871)
.|..+...+++...+.... -.+++..||-.++.+ .+..++.|.+|+=+|+=++. ....+..+...+..-.+-|..
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~ 82 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKI 82 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3445556666654222222 237788888888874 78999999999999987765 356666677777666899999
Q ss_pred HHHHHHHHHHHhhCCCccCh----------hHHHhhchhhhcccChhHHHHHHHHHHHHH
Q 000200 147 PAIDVMFQALSEFGAKIIPP----------KRILKMLPELFDHQDQNVRASSKGLTLELC 196 (1871)
Q Consensus 147 aai~~l~~~l~~FG~~vv~~----------K~ilk~l~~lf~~~dk~VR~ea~~L~vely 196 (1871)
.|+.++..++..||...++. ..+++.+-+.+.+.|+.||..+..-+.-|.
T Consensus 83 ~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 83 TALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999976642 358999999999999999988766555443
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.14 E-value=1.1e+02 Score=41.06 Aligned_cols=343 Identities=17% Similarity=0.183 Sum_probs=193.3
Q ss_pred hhhhccChHHHHHHHHHHHHhhhcCCCCCCCh-HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH-hccccccchhhhHH
Q 000200 292 EGVKATKWSERKDAVAELTKLASTKRIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARG-LRTHFSGSSRFLLP 369 (1871)
Q Consensus 292 ~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy-~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~g-Lr~~F~~y~~~~~~ 369 (1871)
+-+.+.|+.|+.=+-=-+.-|.... .|+ ..++..+++=|.-.|-.-|.+|++||+.+... |+..|.
T Consensus 81 ~LLss~kysEKqIGYl~is~L~n~n----~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~-------- 148 (938)
T KOG1077|consen 81 NLLSSNKYSEKQIGYLFISLLLNEN----SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFA-------- 148 (938)
T ss_pred HHhhcCCccHHHHhHHHHHHHHhcc----hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhh--------
Confidence 3467788888765544444444322 222 34556778888888999999999999988642 222221
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHh--hcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhH
Q 000200 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV--KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1871)
Q Consensus 370 ~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al--~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~ 447 (1871)
+||--.| ..-.+-||+.+..-|-|.+.+.+...- ...+.
T Consensus 149 ------------------------------------~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~---~~~W~ 189 (938)
T KOG1077|consen 149 ------------------------------------DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN---PGEWA 189 (938)
T ss_pred ------------------------------------hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccC---hhhHH
Confidence 1221111 123366788788888888887643322 14578
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCC-C---CCCCCCccccCCCCCC
Q 000200 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGD-V---ATGTSSARVQTSGGSV 523 (1871)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~-~---~~~~~~~~~~~~~~~~ 523 (1871)
..++.+|||++=.|--|+...+..|.+.--+.--..+.-.+ +++.-.+-..+-. . =-.-|. |+
T Consensus 190 ~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~av-----s~L~riv~~~~t~~qdYTyy~vP~---PW----- 256 (938)
T KOG1077|consen 190 QRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAV-----SRLSRIVVVVGTSLQDYTYYFVPA---PW----- 256 (938)
T ss_pred HHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHH-----HHHHHHHhhcccchhhceeecCCC---hH-----
Confidence 88999999999999999998888888776643211111111 1222222111000 0 000000 00
Q ss_pred CCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCc
Q 000200 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (1871)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~ 603 (1871)
-.++- -+...-- |++. |. ......-|+-+++.....
T Consensus 257 --------L~vKl--~rlLq~~-p~~~--------------------------------D~-~~r~~l~evl~~iLnk~~ 292 (938)
T KOG1077|consen 257 --------LQVKL--LRLLQIY-PTPE--------------------------------DP-STRARLNEVLERILNKAQ 292 (938)
T ss_pred --------HHHHH--HHHHHhC-CCCC--------------------------------Cc-hHHHHHHHHHHHHHhccc
Confidence 00000 0000000 1100 00 000011222222211111
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCC---CccchHHHHHHHHHHHHHHHHhcCCCCcc
Q 000200 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPG---WSEKNVQVQQQVIEVINYLAATATKFPKK 680 (1871)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~Pg---wkesNfqV~~~~leil~~la~~~~~fs~~ 680 (1871)
+ --.+++-.++.+-=--|.+.+.-.-..|.+.+++.|.....-. -+|+|..-+ .||-++.++. +.|+-.
T Consensus 293 ~----~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYL--aLEsm~~L~s--s~~s~d 364 (938)
T KOG1077|consen 293 E----PPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYL--ALESMCKLAS--SEFSID 364 (938)
T ss_pred c----CccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhh--hHHHHHHHHh--ccchHH
Confidence 1 0145666666665555666766655556666777666543322 389998754 5787887776 366533
Q ss_pred ch----hhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccC
Q 000200 681 CV----VLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS 752 (1871)
Q Consensus 681 ~~----~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~ 752 (1871)
.+ ..++..+- .--|+-+|..|-++|-++|......-++++++.++ .+-.+-+++|-..-++=+-+.|..+
T Consensus 365 avK~h~d~Ii~sLk-terDvSirrravDLLY~mcD~~Nak~IV~elLqYL-~tAd~sireeivlKvAILaEKyAtD 438 (938)
T KOG1077|consen 365 AVKKHQDTIINSLK-TERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYL-ETADYSIREEIVLKVAILAEKYATD 438 (938)
T ss_pred HHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHH-hhcchHHHHHHHHHHHHHHHHhcCC
Confidence 33 34444432 02377789999999999999999999999999996 6788888888877776666677654
|
|
| >cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein | Back alignment and domain information |
|---|
Probab=81.13 E-value=8.2 Score=42.01 Aligned_cols=96 Identities=15% Similarity=0.227 Sum_probs=71.8
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~ 370 (1871)
+.+.+|.-=.|.-|.+. .. ...=.+.+++|+++|. ..|.+|+..|+..++.+.+-=|..|... .+-++..
T Consensus 14 l~~~dw~~ileicD~In----~~---~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e 86 (141)
T cd03565 14 LQSEDWGLNMEICDIIN----ET---EDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKD 86 (141)
T ss_pred CCCcCHHHHHHHHHHHh----CC---CCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhH
Confidence 45567866555544432 11 2234689999999998 6799999999999999999999999876 3567776
Q ss_pred -HHHHhccCC---HHHHHHHHHHHHHHHHh
Q 000200 371 -LLEKLKEKK---PTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 371 -lLeklKEKK---~~V~eAl~~aLda~~~~ 396 (1871)
|+..+..+. ..|.+-+.+.+..|...
T Consensus 87 ~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 87 VLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 666666543 37888888889888764
|
The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways. |
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=80.64 E-value=36 Score=38.75 Aligned_cols=153 Identities=20% Similarity=0.199 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHhhhcCCCCc-hhhh-h------------hhhchhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhh
Q 000200 26 KVRNEANIDLAALCDSITDPKD-NRIR-E------------LGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYA 91 (1871)
Q Consensus 26 KaRl~ayeel~~~f~~~~d~~d-~~~~-~------------~~~l~kk~v~DsN~~aqek~leal~~~l~~a~~~~~~~~ 91 (1871)
|.|++|..-|...++.. +.+. .-|| . -.+++.-++.|.|.-+.-.++.++.+++++... +-..+
T Consensus 1 kvR~~Al~~L~al~k~~-~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~-~L~~A 78 (182)
T PF13251_consen 1 KVRQAALQCLQALAKST-DKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKP-FLAQA 78 (182)
T ss_pred ChhHHHHHHHHHHHHhc-CCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHH-HHHHH
Confidence 78999999998888753 2221 0111 1 134555568999999999999999999988533 11111
Q ss_pred hHHHHHHHHh--hhcCChhhHHHHHHHHHHHHhhcchhhHHHHHHHHhh-ccCchhHHHHHHHHHHHHHhhCCCccC---
Q 000200 92 KEVCDAIAAK--CLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFGAKIIP--- 165 (1871)
Q Consensus 92 ~~~~~~lveK--~L~~r~~tk~~a~e~~l~~vE~e~~~~v~e~ll~~~~-~K~PKvvaaai~~l~~~l~~FG~~vv~--- 165 (1871)
++-- .+ .|++ .+..+..+..| +=+.|+-++. .+++-+...++.++..++...=..-++
T Consensus 79 e~~~----~~~~sFts------lS~tLa~~i~~------lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~l 142 (182)
T PF13251_consen 79 EESK----GPSGSFTS------LSSTLASMIME------LHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGL 142 (182)
T ss_pred HhcC----CCCCCccc------HHHHHHHHHHH------HHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhH
Confidence 1000 01 1111 23333333333 2233444444 467888999999999888887776665
Q ss_pred hhHHHhhchhhhcccChhHHHHHHHHHHHHH
Q 000200 166 PKRILKMLPELFDHQDQNVRASSKGLTLELC 196 (1871)
Q Consensus 166 ~K~ilk~l~~lf~~~dk~VR~ea~~L~vely 196 (1871)
+..++..+.+++.|.|.+||-.+...++.+-
T Consensus 143 l~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 143 LTEVVTQVRPLLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 5678899999999999999999877766553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1871 | ||||
| 2of3_A | 266 | Tog Domain Structure From C.Elegans Zyg9 Length = 2 | 5e-26 | ||
| 2qk2_A | 242 | Structural Basis Of Microtubule Plus End Tracking B | 2e-09 | ||
| 4ffb_C | 278 | A Tog:alphaBETA-Tubulin Complex Structure Reveals C | 6e-06 | ||
| 2qk1_A | 249 | Structural Basis Of Microtubule Plus End Tracking B | 5e-05 |
| >pdb|2OF3|A Chain A, Tog Domain Structure From C.Elegans Zyg9 Length = 266 | Back alignment and structure |
|
| >pdb|2QK2|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215 And Eb1 Length = 242 | Back alignment and structure |
|
| >pdb|4FFB|C Chain C, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 278 | Back alignment and structure |
|
| >pdb|2QK1|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215, Clip-170 And Eb1 Length = 249 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 243 bits (622), Expect = 5e-73
Identities = 66/255 (25%), Positives = 134/255 (52%)
Query: 1133 NVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLE 1192
K ++ +++ + ++ F+ P E I +L+ + + L +L DFK+ + L+
Sbjct: 9 EDKKQRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALD 68
Query: 1193 MLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES 1252
L + + + ++ D+LL+W L+F ++N L+KVLE + + +RD +++
Sbjct: 69 SLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128
Query: 1253 EAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECV 1312
E + F+P L+ K+G + +R +R++ + + K P +L+ L+SKN R R EC+
Sbjct: 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECL 188
Query: 1313 DLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGK 1372
++ + I + G L + VA ++D +R AA+N L +K G+ +W+ G+
Sbjct: 189 LVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGR 248
Query: 1373 LTDAQKSMLDDRFKW 1387
+ D KS++++R K
Sbjct: 249 MADKDKSLVEERIKR 263
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 92.9 bits (230), Expect = 1e-20
Identities = 50/261 (19%), Positives = 104/261 (39%), Gaps = 12/261 (4%)
Query: 562 PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEA 621
KK +++ KL + P++ + ++++ LG+ + QL +K+ L A
Sbjct: 8 NEDKKQRIKEEKQLKLVKWNFQ-APTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAA 66
Query: 622 ISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN----YLAATATK 676
+ SL + + L + ++L++ + + E N +V+E+ + T T
Sbjct: 67 LDSLVRLADTSPRSLLSNSDLLLKWCTLR--FFETNPAALIKVLELCKVIVELIRDTETP 124
Query: 677 FPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKV 734
++ V + + + + K R + S+ VGP + L +K KN +
Sbjct: 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALK-SKNARQ 183
Query: 735 LSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794
SE +L + + + G+S LK + + RNA I +L A KF G +
Sbjct: 184 RSECLLVIEYYITNAGISPLKSLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFEGDQM 242
Query: 795 KGFLADVKPALLSALDAEYEK 815
+ S ++ ++
Sbjct: 243 WKAAGRMADKDKSLVEERIKR 263
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 92.2 bits (228), Expect = 2e-20
Identities = 34/225 (15%), Positives = 76/225 (33%), Gaps = 6/225 (2%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
+S+ + LL K+ +L HK++K A L L D+ + L
Sbjct: 36 ISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLR 95
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGR----YAKEVCDAIAAKCLTGRPKTVEKAQAV 116
++N K L+ ++ + K + + +
Sbjct: 96 FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDI 155
Query: 117 FMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPEL 176
+ ++ ++ A+K+K A+ + V+ ++ G + + K +
Sbjct: 156 VNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPF 215
Query: 177 FDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELE 221
+D NVR ++ + + ++ G K +M D K +E
Sbjct: 216 VGDKDVNVRNAAINVLVACFKFEGDQMWK--AAGRMADKDKSLVE 258
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 80.6 bits (198), Expect = 2e-16
Identities = 40/228 (17%), Positives = 89/228 (39%), Gaps = 11/228 (4%)
Query: 847 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD 906
+ + + +L+ L D+K L +++++ ++ + + + + L R ++
Sbjct: 40 QTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFE 98
Query: 907 SNKNLVMATLITLGAVASAM----GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 962
+N ++ L + + P ++ + +L G+ K +MR +++
Sbjct: 99 TNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNV 158
Query: 963 WLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSK--QLTGLSGFPDAAHLLKPASIA 1020
V KM P + AL A R + + G+S + + K +
Sbjct: 159 LSDVVGPLKMTPMLLDALKSKN--ARQRSECLLVIEYYITNAGISPLKSLS-VEKTVAPF 215
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIK 1068
+ DK +VR AA +V + G + + K + +L+ ERIK
Sbjct: 216 VGDKDVNVRNAAINVLVACFKFEG-DQMWKAAGRMADKDKSLVEERIK 262
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 80.6 bits (198), Expect = 2e-16
Identities = 35/228 (15%), Positives = 80/228 (35%), Gaps = 10/228 (4%)
Query: 282 LTPLEKSGFWEGVKATKWSERKDAVAELTK-LASTKRIAPGDFTEVCRTLKKLITDVNIA 340
L K + + + A+ L + ++ R + + + + N A
Sbjct: 43 LGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPA 102
Query: 341 VAVEAIQAIGNLARGLRTH----FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396
++ ++ + +R +P LL K E K + S+ + +
Sbjct: 103 ALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV 162
Query: 397 GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLND 456
+ + ++K+K RS L + + I + + + + D
Sbjct: 163 VGPLKM--TPMLLDALKSKNARQRSECLLVIEYYITNAGISPLK--SLSVEKTVAPFVGD 218
Query: 457 GTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSG 504
VR+AA +VL A K G + + ++ ++ D ++ + E I +G
Sbjct: 219 KDVNVRNAAINVLVACFKFEGDQ-MWKAAGRMADKDKSLVEERIKRTG 265
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 207 bits (527), Expect = 5e-60
Identities = 64/272 (23%), Positives = 125/272 (45%), Gaps = 21/272 (7%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALC-----DSITDPKDNRIRELGP 55
MS EE+ + LP E+RL +K WK R EA +L L D D
Sbjct: 1 MSGEEE--VDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPT 58
Query: 56 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAK------EVCDAIAAKCLTG-RPK 108
LF + + DSN Q++A+ AL + + A + + + A + K LT R
Sbjct: 59 LFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRAT 118
Query: 109 TVEKAQAVFMLWVELE-AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPK 167
T ++ + + L+ ++ ++++ + K+ K + A + +++ ++ FG + +
Sbjct: 119 TKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQ 178
Query: 168 ----RILKMLPELFDHQDQNVRASSKGLTLELCRWIG--KDPVKTILFEKMRDTMKKELE 221
+LK +P+L H D+NVR+ + L +E+ + G D ++ ILF+K++ K+L
Sbjct: 179 TFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLH 238
Query: 222 VELVNVSGTARPTRKIRAEQDKELGQELISED 253
V ++ + + +EL ++ E+
Sbjct: 239 KLFAKVGDEPSSSKMLFEWEKRELEKKRSQEE 270
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 98.3 bits (244), Expect = 3e-22
Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 35/270 (12%)
Query: 580 APEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSV 639
E+V+ + + LEE +L +WK RLEA L Q
Sbjct: 3 GEEEVDYTTLPLEE---------------RLTYKLWKARLEAYKELNQLFRNSVGDISRD 47
Query: 640 EILVRLVCMLPGW----SEKNVQVQQQVIEVINYL------AATATKFPKKCVVLCLLGI 689
+ + + ++ NV Q+Q I +N L ++ + +
Sbjct: 48 DNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLL 107
Query: 690 SERV---ADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAV 746
E+ + T+ +M C+ + L + K PK+++ + +
Sbjct: 108 VEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELM 167
Query: 747 EDFGVSHLKLKDLI-DFCKDTG--LQSSAAATRNATIKLLGALHKFVGPDI----KGFLA 799
FG++++ ++ + + K R+ T+ L+ ++K G + +
Sbjct: 168 AAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFK 227
Query: 800 DVKPALLSALDAEYEKNPFEGTVVPKKTVR 829
+KP + L + K E +
Sbjct: 228 KLKPIQVKDLHKLFAKVGDEPSSSKMLFEW 257
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 71.7 bits (175), Expect = 2e-13
Identities = 42/264 (15%), Positives = 80/264 (30%), Gaps = 25/264 (9%)
Query: 1175 LHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCK-----SNTTCLL 1229
L RL +K +++ + L + + DI +I + W SN
Sbjct: 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQE 73
Query: 1230 KVLEFLPELFDTLRDEGYSLTE--SEAAVFLPCLVEKS-GHNIEKVREKMRELTKQIVNF 1286
+ + L L D + + + P LVEK + + + +
Sbjct: 74 QAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL 133
Query: 1287 -YSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIV----ASLTA 1341
S T+++ ++ K + + V L+ G L + L
Sbjct: 134 DTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAG 193
Query: 1342 ERDGEIRKAALNTLATGYKILGEDIWR----YVGKLTDAQKSMLDDRFKWKVREMEKKKE 1397
D +R +N + YK+ G + KL Q L F K
Sbjct: 194 HGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLF--------AKVG 245
Query: 1398 GKPGEARAALRRSVRENGSDIAEQ 1421
+P ++ RE +++
Sbjct: 246 DEPSSSKMLFEWEKRELEKKRSQE 269
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 70.6 bits (172), Expect = 6e-13
Identities = 34/216 (15%), Positives = 67/216 (31%), Gaps = 16/216 (7%)
Query: 298 KWSERKDAVAELTKLASTKRIAPGD------FTEVCRTLKKLITDVNIAVAVEAIQAI-- 349
W R +A EL +L + + ITD N+ +AI A+
Sbjct: 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNS 81
Query: 350 ----GNLARGLRTHFSGSSRFLLPVLLEK-LKEKKPTVAESLTQTLQAMHKAGCLNLVDV 404
+ H P+L+EK L + T + ++ ++
Sbjct: 82 LIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL-DTSITQS 140
Query: 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIET--SSKAAVLKVHKDYVPICMECLNDGTPEVR 462
VE V + K+P + + N V + + V + + + G VR
Sbjct: 141 VELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVR 200
Query: 463 DAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSE 498
+++ I K G ++ ++ +
Sbjct: 201 SQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKD 236
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 4e-09
Identities = 41/266 (15%), Positives = 89/266 (33%), Gaps = 24/266 (9%)
Query: 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF----GGLRGRLYDSNKNLVM 913
L + L WK RLE+ + +N++ + I +++ + DSN
Sbjct: 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQE 73
Query: 914 ATLITLGAVASAMGPAVEKSSKG-------VLSDILKCLGDNKKHMRECTLTVLDAWLAA 966
++ L ++ A + K++ + K L ++ + +++ + +
Sbjct: 74 QAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL 133
Query: 967 VHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQL-----TGLSGFPDAAHLLKPASIAM 1021
+ + KL + + + + + T ++ LLK
Sbjct: 134 DTSITQSVELVIPFFEKKL-PKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLA 192
Query: 1022 TDKSSDVRKAAEACIVEILRAGG------QETIEKNLKDIQGPALALILERIKLNGASQV 1075
+VR IVEI + G +E + K LK IQ L + ++ + S
Sbjct: 193 GHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVG-DEPSSS 251
Query: 1076 SMGPTSKSSSKVPKSASNGVSKHGNR 1101
M + K + + H +
Sbjct: 252 KMLFEWEKRELEKKRSQEEEAHHHHH 277
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 198 bits (505), Expect = 2e-57
Identities = 58/245 (23%), Positives = 111/245 (45%), Gaps = 16/245 (6%)
Query: 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL--TKLASTKRI--APGDFTEV 326
++ IL L K F E + ++KW +R +A+ E + L+ TK++ +++ +
Sbjct: 3 HMASMLPEETILDKLPKD-FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNL 61
Query: 327 CRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH--FSGSSRFLLPVLLEKLKEKKPTVA 383
+I D NI A Q++ + L+T + LL++ KEKKP+V
Sbjct: 62 LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVI 121
Query: 384 ESLTQTLQAMHK-----AGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-- 436
E++ + L + K A D+++D+ +K+K P +R ++
Sbjct: 122 EAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGY 181
Query: 437 -AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNK 495
+ + VPI ++ +ND P +R F A + K GM +++E LD+++R K
Sbjct: 182 STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKK 241
Query: 496 LSEMI 500
+ E +
Sbjct: 242 IEETV 246
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 92.8 bits (230), Expect = 9e-21
Identities = 34/244 (13%), Positives = 72/244 (29%), Gaps = 20/244 (8%)
Query: 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT--GELFGGL 900
LP E I K + + S WK R+E++E + K+++ L G
Sbjct: 6 SMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIY 65
Query: 901 RGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRECTL 957
+ D+N V ++ + + V + +L + K + E
Sbjct: 66 GHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIR 125
Query: 958 TVL-------DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA 1010
L D ++ + M+ + + + R + + +
Sbjct: 126 KALLTICKYYDPLASSGRNEDMLKDILEHMKHKT--PQIRMECTQLFNASMKEEKDGYST 183
Query: 1011 AHLLKPASIA------MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALIL 1064
+ + D +R +++ G T K L+ + I
Sbjct: 184 LQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIE 243
Query: 1065 ERIK 1068
E +K
Sbjct: 244 ETVK 247
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 80.5 bits (198), Expect = 2e-16
Identities = 47/249 (18%), Positives = 91/249 (36%), Gaps = 31/249 (12%)
Query: 1166 DMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDII-------EVLDILLRWFVL 1218
++ +D R+ S+ +K +V+ LE ++ S K + +L I
Sbjct: 12 TILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQ- 70
Query: 1219 QFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRE 1278
+N + + + + D L+ G+S + ++ L++++ V E +R+
Sbjct: 71 --KDANIQAVALAAQSVELICDKLKTPGFS--KDYVSLVFTPLLDRTKEKKPSVIEAIRK 126
Query: 1279 LTKQIVNFYSATKT-------LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLK 1331
I +Y + L ILE ++ K + R+EC L + S +
Sbjct: 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQR 186
Query: 1332 SLQ-----IVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFK 1386
L+ IV + + IR + A KI G K + LD+ +
Sbjct: 187 YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM---NTFVKTLEH----LDNLKR 239
Query: 1387 WKVREMEKK 1395
K+ E K
Sbjct: 240 KKIEETVKT 248
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 2e-15
Identities = 37/235 (15%), Positives = 78/235 (33%), Gaps = 20/235 (8%)
Query: 600 SLIPADTVGQLKSAVWKERLEAISSLRQQV-EAVQNLDQSVEILVRLVCMLPGW--SEKN 656
+P D ++ S+ WK+R+EA+ V + L + + L+ + + N
Sbjct: 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN 74
Query: 657 VQVQQQVIEVINYLAAT--ATKFPKKCVVLCLLGISERVADIKT--RAHAMKCLTTFSEA 712
+Q + + + F K V L + +R + K K L T +
Sbjct: 75 IQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY 134
Query: 713 VGPGFIFERLYKIMKD------HKNPKVLSEGILWMVSAVEDFGVSHLKL-----KDLID 761
P R ++KD HK P++ E +++++ + L +++
Sbjct: 135 YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVP 194
Query: 762 FCKDTGLQSSAAATRNATIKLLGALHKFVGP-DIKGFLADVKPALLSALDAEYEK 815
+ + A R + L K G L + ++ +
Sbjct: 195 IVIQI-VNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIEETVKT 248
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 7e-08
Identities = 30/230 (13%), Positives = 73/230 (31%), Gaps = 21/230 (9%)
Query: 12 KKLP--WEDRLLHKNWKVRNEA----NIDLAALCDSITDPKDNRIRELGPLFKKTVADSN 65
KLP +++R+ WK R EA + + + N LG D+N
Sbjct: 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN 74
Query: 66 APVQDKALDALIAYLKA--ADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL 123
A ++ + Y V + + +P +E + + +
Sbjct: 75 IQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY 134
Query: 124 -------EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP-----KRILK 171
+ L + + +K+K + + + ++ E ++
Sbjct: 135 YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVP 194
Query: 172 MLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELE 221
++ ++ + +R L + G + L E + + +K++E
Sbjct: 195 IVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTL-EHLDNLKRKKIE 243
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 2e-50
Identities = 69/233 (29%), Positives = 121/233 (51%), Gaps = 6/233 (2%)
Query: 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRT 329
+L+DPVDIL+ + K F++ ++ KW+ RK+++ L KL ++ G++ +
Sbjct: 2 SHMDLLDPVDILSKMPKD-FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSA 60
Query: 330 LKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQ 388
LKK+IT D N+ + A + + LA+GL FS + +P LLEK KEKKP V +L +
Sbjct: 61 LKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALRE 120
Query: 389 TLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE-TSSKAAVLKVHKDYV 447
+ A++ +L E + S+ NK P V+S T ++ + T A K+ K
Sbjct: 121 AIDAIYA--STSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLT 178
Query: 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500
++ LN+ P VRD++ L + K +G + + + +D ++ K+ E
Sbjct: 179 TSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQ 231
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-26
Identities = 44/231 (19%), Positives = 89/231 (38%), Gaps = 8/231 (3%)
Query: 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902
D L DI K LE W +R ES+E + K+L + +++ G L L+
Sbjct: 5 DLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEYGALVSALKK 63
Query: 903 RLY-DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
+ DSN LV L +A + + + +L+ + K ++ +D
Sbjct: 64 VITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAID 123
Query: 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP----A 1017
A A+ L+ + +L++ + + ++++ LT LLK
Sbjct: 124 AIYASTSLEAQQESIVESLSNKN--PSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIK 1068
+ + VR ++ + +++ G + + L D+ +A I E +
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQE 232
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 90.8 bits (225), Expect = 3e-20
Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 9/226 (3%)
Query: 1166 DMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCK-SN 1224
D++ +D + +L + + + LE+L+K L K L+ K SN
Sbjct: 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN 70
Query: 1225 TTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIV 1284
+ + L L L + A+ +P L+EK V +RE I
Sbjct: 71 VVLVAMAGKCLALLAKGLAKR----FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIY 126
Query: 1285 NFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAE--ISGQLKSL-QIVASLTA 1341
S I+E L +KN + E + + LK L +
Sbjct: 127 ASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLN 186
Query: 1342 ERDGEIRKAALNTLATGYKILGED-IWRYVGKLTDAQKSMLDDRFK 1386
E D +R ++ L T K++G+ + + + + + + + +
Sbjct: 187 EPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQE 232
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 79.7 bits (196), Expect = 2e-16
Identities = 39/216 (18%), Positives = 74/216 (34%), Gaps = 7/216 (3%)
Query: 12 KKLP--WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVA-DSNAPV 68
K+P + D+L K W +R E+ L L ++ L KK + DSN +
Sbjct: 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVL 73
Query: 69 QDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDV 128
A L K YA ++ K +P V + +++
Sbjct: 74 VAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEA 133
Query: 129 FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP---KRILKMLPELFDHQDQNVR 185
+ + +++ NK + +AL+ + K + L + + D VR
Sbjct: 134 QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVR 193
Query: 186 ASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELE 221
SS L + +G V +L + +++
Sbjct: 194 DSSAEALGTLIKLMGDKAVTPLL-ADVDPLKMAKIK 228
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 1e-15
Identities = 45/224 (20%), Positives = 85/224 (37%), Gaps = 12/224 (5%)
Query: 600 SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS--VEILVRLVCMLPGWSEKNV 657
S +P D +L+ W R E++ L + + L+ ++ L ++ + NV
Sbjct: 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVI--TKDSNV 71
Query: 658 QVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGP 715
+ + + LA K C+ + E+ + K + + +
Sbjct: 72 VLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL 131
Query: 716 GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSA 772
E + + + +KNP V SE L++ A+ + L LK L L
Sbjct: 132 EAQQESIVESLS-NKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLV-KTLNEPD 189
Query: 773 AATRNATIKLLGALHKFVGPD-IKGFLADVKPALLSALDAEYEK 815
R+++ + LG L K +G + LADV P ++ + EK
Sbjct: 190 PTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEK 233
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 83.0 bits (204), Expect = 7e-16
Identities = 118/766 (15%), Positives = 233/766 (30%), Gaps = 249/766 (32%)
Query: 748 DF--GVSHLKLKDLI-----DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLAD 800
DF G + KD++ F + D K D
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNF--------------------------DCK----D 37
Query: 801 VKPALLSAL-DAEY-----EKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKF 854
V+ S L E K+ GT+ T+ + +E++ KF
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK---------------QEEMVQKF 82
Query: 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMA 914
V+ + ++K + I+ + QP+ ++ R RLY+ N+
Sbjct: 83 ----VEEVLRINYKFLMSPIKTEQR---------QPSMMTRMYIEQRDRLYNDNQ----- 124
Query: 915 TLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK---H-MRECTLTVLDAWLAAVHLD 970
+ V ++ K L L L K + T W+A
Sbjct: 125 -VFAKYNV-----SRLQPYLK--LRQALLELRPAKNVLIDGVLGSGKT----WVAL---- 168
Query: 971 KMVPYVTTALTDAKLGAEGRKDLFD----WLS-----------KQLTGLSGFPDAAHLLK 1015
K+ + D WL+ + L L + +
Sbjct: 169 -------DVCLSYKV-----QCKMDFKIFWLNLKNCNSPETVLEMLQKLL------YQID 210
Query: 1016 PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALIL------ERIK- 1068
P + +D SS+++ + E+ R K ++ L L+L +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRL----LKSKPYEN----CL-LVLLNVQNAKAWNA 261
Query: 1069 LNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQS 1128
N + ++ + T++ V S + H S + P+ + S+
Sbjct: 262 FNLSCKILL--TTRFKQ-VTDFLSAATTTH-----ISLDHHSMTLTPDEVKSL------- 306
Query: 1129 QALLNVKDSNKED--RE---------RMVVRRFKFEDP-RIEQIQELENDMMKYFREDLH 1176
LL D +D RE ++ + + + + + D + E
Sbjct: 307 --LLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSL 363
Query: 1177 RRLLSTDFKKQVDGLEMLQKALPSIRKDI-IEVLDILLRWFVLQFCKSNTTCLLKVLEFL 1235
L +++K D L + + I +L ++ W + ++ V+ L
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAH-----IPTILLSLI--W-----FDVIKSDVMVVVNKL 411
Query: 1236 PELFDTLRDEGYSLTE---SEAAVFLP-CLVEKSGHNIEKVREKMRELTKQIVNFYSATK 1291
YSL E E+ + +P +E E L + IV+ Y+ K
Sbjct: 412 ---------HKYSLVEKQPKESTISIPSIYLELKVK-----LENEYALHRSIVDHYNIPK 457
Query: 1292 TLPYILEGLRSKNNRTRIECVDLVGFL---IDHHGAEISGQLKSLQIVASLTAERDGEIR 1348
T ++ +D + I HH LK+++ ER R
Sbjct: 458 TFD---------SDDLIPPYLD--QYFYSHIGHH-------LKNIE-----HPERMTLFR 494
Query: 1349 KAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDD--RFKWKVREMEKKKEGKPGEARAA 1406
L+ ++ L + I R+ +A S+L+ + K + + K A
Sbjct: 495 MVFLD-----FRFLEQKI-RHDSTAWNASGSILNTLQQLK-FYKPYICDNDPKYERLVNA 547
Query: 1407 LRRSVRENGSDIAE-QSGDVSQSVSGPTLMRRN---YGHSELHVER 1448
+ + + ++ + D+ + LM + + + V+R
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRI----ALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 79.9 bits (196), Expect = 6e-15
Identities = 100/756 (13%), Positives = 204/756 (26%), Gaps = 249/756 (32%)
Query: 1154 DPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIR-KDIIEVLDIL 1212
D + Q D++ F + D K D +M + L II D +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNF---DCK---DVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 1213 LRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKV 1272
LF TL + E F+ ++ N + +
Sbjct: 62 SGTLR--------------------LFWTLLSKQ----EEMVQKFVEEVLRI---NYKFL 94
Query: 1273 REKMRELTKQ---IVNFYSATKTLPYILEGLRSKNNRTRIECVD-----LVGFLIDH--- 1321
++ +Q + Y + Y + +K N +R++ L+ L
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNV 153
Query: 1322 --HGAEISGQLKSLQIVASLTAE--RDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQ 1377
G SG K+ + + +++ +KI W + +
Sbjct: 154 LIDGVLGSG--KT-----WVALDVCLSYKVQCKM------DFKIF----WLNLKNCNSPE 196
Query: 1378 KSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRR 1437
+ EM +K L + N + ++ S ++ + R
Sbjct: 197 TVL----------EMLQK-----------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 1438 NYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDP 1497
S+ + L L
Sbjct: 236 RLLKSKPY------ENCL------------L----------------------------- 248
Query: 1498 EGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQ 1557
V+ V++A K F+ SCK L+ T + K++ +
Sbjct: 249 ---VLLN-VQNA---------KAWNAFNL--------SCK----ILLTT-RFKQVTDFLS 282
Query: 1558 ESTLDSLITELLLWLLDERVPHMDDGSQLL-KALNVLMLKILDNADRTSSFVV-LI-NLL 1614
+T + + L D+ LL K L+ + T+ + +I +
Sbjct: 283 AATTTHISLDHHSMTLTP-----DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 1615 RPLDPSRWPSPASNESFAARNQ-RFSDLVVKCLIKLTKVLQSTIY--------DVD---- 1661
R + W +++ N + + ++ L L ++
Sbjct: 338 RD-GLATW------DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 1662 -LDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHEL-----VKLRGAAIKGHLS 1715
L I + + + ++ + + + +P + + + VKL H S
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-IPSIYLELKVKLENEYAL-HRS 448
Query: 1716 MV----------PIDMKPQPI---ILAYIDLNLETLAAARMLTSTGPGGQT--------- 1753
+V D+ P + ++I L + +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHI---------GHHLKNIEHPERMTLFRMVFLD 499
Query: 1754 -HW-------GDSAANNPTSATNSADAQLKQELAAIFKKIG--DKQTCTIGLYELYRI-T 1802
+ +A N S N+ QLK I ++ I + L +I
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTL-QQLKFYKPYICDNDPKYERLVNAILDF-LPKIEE 557
Query: 1803 QLY--PKVDI--FAQLQNASEAFRTYIRDGLAQMEK 1834
L D+ A L EA + Q+++
Sbjct: 558 NLICSKYTDLLRIA-LMAEDEA---IFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.3 bits (171), Expect = 6e-12
Identities = 100/735 (13%), Positives = 204/735 (27%), Gaps = 241/735 (32%)
Query: 242 DKELGQ-ELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
D E G+ + +D+ +D ++ D D+ +
Sbjct: 8 DFETGEHQYQYKDILS-------VFEDAFVDNFDCKDVQDMPKSILSK-----------E 49
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVC----RTLKKLITDV---NIAVAVEAIQAIGNLA 353
E + ++ T R+ F + ++K + +V N + I+
Sbjct: 50 EIDHIIMSKDAVSGTLRL----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 354 RGLRTHFSGSSRFLL---PVLLEKL----KEKKPTVAESLTQ-------TLQAMHKAG-- 397
+ + R L + K + + ++L + + + +G
Sbjct: 106 SMMTRMYI-EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 398 CLNLVDVVED--VKTSVKNKVPLVRSLTLNWVTF--CIETSSKAAVL-----KVHKDYVP 448
+ +DV V+ + K+ W+ C + +L ++ ++
Sbjct: 165 WV-ALDVCLSYKVQCKMDFKI--------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 449 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGD-- 506
+D + ++ S+ A + + + +P E + L +V+ K +
Sbjct: 216 -----RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----NLS 265
Query: 507 ----VATGTSS--ARVQTSGGSVPSVEASESSFVRKSAASMLS---GKRPVSAAPASKKG 557
+ T + + + S++ + S+L RP
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 558 GPVKPS----AKKDGSG------KQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV 607
P + S + +DG KLT E SL +E PA+
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI------IESSLNVLE-------PAEY- 371
Query: 608 GQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 667
++ + + +V S I L+ ++ W + V+
Sbjct: 372 --------RKMFDRL--------SV--FPPSAHIPTILLSLI--WFDVIKSDVMVVVN-- 409
Query: 668 NYLAATATKFPKKCVVLC--------LLGISERV---ADIKTRAHAMKCLTTFSEAVGPG 716
K K +V + I + + + H
Sbjct: 410 --------KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS------------- 448
Query: 717 FIFERLYKIMK----DHKNPKVLSEGILWMVSAVEDFGVSHLKLKD-----------LID 761
I + Y I K D P L + HLK + +D
Sbjct: 449 -IVDH-YNIPKTFDSDDLIPPYLDQYFYS-------HIGHHLKNIEHPERMTLFRMVFLD 499
Query: 762 F-------CKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYE 814
F D+ +A + + L L + K ++ D P L
Sbjct: 500 FRFLEQKIRHDS----TAWNASGSILNTLQQLKFY-----KPYICDNDPK-YERLVNAIL 549
Query: 815 KNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESI 874
F +P + E+ I K+T L +L + D
Sbjct: 550 D--F----LP----KIEENL---------------ICSKYTDLLRIALMAED-------- 576
Query: 875 EAVNKILEEANKRIQ 889
I EEA+K++Q
Sbjct: 577 ---EAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 2e-11
Identities = 95/647 (14%), Positives = 195/647 (30%), Gaps = 191/647 (29%)
Query: 1287 YSATKTLPYILEGLRSKNNRTRIECVDLVGFL--------IDHHGAEISGQLKSLQIVAS 1338
Y L + +C D+ IDH +L++ +
Sbjct: 16 YQYKDILSVFEDAFVDN-----FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 1339 LTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRF------------- 1385
L ++++ ++K L YK L + + Q SM+ +
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSP-IKTEQR----QPSMMTRMYIEQRDRLYNDNQV 125
Query: 1386 --KWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNYGHSE 1443
K+ V ++ + LR+++ E + +V + G + G +
Sbjct: 126 FAKYNVSRLQPYLK---------LRQALLE-----LRPAKNVL--IDG---VL-GSGKTW 165
Query: 1444 LHVE--RSIMPRALASVSGPTDWNEALDIISFG---SPEQSVEGMKVVCHELAQA-TNDP 1497
+ ++ S + + W ++ SPE +E ++ + +++ T+
Sbjct: 166 VALDVCLSY--KVQCKMDFKIFW------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 1498 EGSVMDEL----VKDADR-------LVSCL-------ANKVAKTFDFSLTGASSRSCKYV 1539
+ S +L ++ R +CL K F+ S CK
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS--------CK-- 267
Query: 1540 LNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLL-KALNVLMLKIL 1598
L+ T + K++ + +T + + L D+ LL K L+ +
Sbjct: 268 --ILLTT-RFKQVTDFLSAATTTHISLDHHSMTLTP-----DEVKSLLLKYLDCRPQDLP 319
Query: 1599 DNADRTSSFVV-LI-NLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQST 1656
T+ + +I +R + W + + KLT +++S+
Sbjct: 320 REVLTTNPRRLSIIAESIRD-GLATW-------------DNWKHVNCD---KLTTIIESS 362
Query: 1657 IYDVDLDRILQSIHVYLQELGM--EEIRRRAGA-----DDKPLRMVKTVLHELVKLRGAA 1709
+ ++ + L + D V V+++L K
Sbjct: 363 LNVLEPAEYRK----MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY---- 414
Query: 1710 IKGHLSMVPIDMKPQPIILAYI-DLNLETLAAARMLTSTGPGGQTHWGDSAAN--NPTSA 1766
S+V K I I + LE H S + N
Sbjct: 415 -----SLVEKQPKESTI---SIPSIYLELKVKLENEY------ALH--RSIVDHYNIPKT 458
Query: 1767 TNSADAQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQL-QNASEAFRTYI 1825
+S D + IG + L I + ++ +F + + FR ++
Sbjct: 459 FDSDDLIPPYLDQYFYSHIG---------HHLKNI-EHPERMTLFRMVFLD----FR-FL 503
Query: 1826 RDGLAQMEKNAAAGRTPSSVPMATPPPAALGSVVPLLQ--KFFPPRI 1870
+K + + A GS++ LQ KF+ P I
Sbjct: 504 E------QK----------IRHDSTAWNASGSILNTLQQLKFYKPYI 534
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 5e-10
Identities = 61/434 (14%), Positives = 138/434 (31%), Gaps = 134/434 (30%)
Query: 1496 DPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYA 1555
D E KD ++S + FD CK V + + + +
Sbjct: 8 DFETGEHQYQYKD---ILSVFEDAFVDNFD----------CKDVQDMPKSILSKEEIDHI 54
Query: 1556 VQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTS-SFVVLINLL 1614
+ S T L W L + ++++ K ++ R + F L++ +
Sbjct: 55 IMSKDAVSG-TLRLFWTL------LSKQEEMVQ-------KFVEEVLRINYKF--LMSPI 98
Query: 1615 RPLDPSRWPSPASNESFAAR------NQRFSDLVV---KCLIKLTKVLQSTIYDVDLDRI 1665
+ R PS + R NQ F+ V + +KL + L R
Sbjct: 99 K--TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-------LRP 149
Query: 1666 LQSIHVYLQELGM---------------EEIRRR---------AGADDKP---LRMVKTV 1698
+++ + G+ +++ + + P L M++ +
Sbjct: 150 AKNVLID----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 1699 LHEL-------------VKLRGAAIKGHLSMVPIDMKPQP---IILAYIDL-NLETLAA- 1740
L+++ +KLR +I+ L + + KP ++L ++ N + A
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLL--NVQNAKAWNAF 262
Query: 1741 ---ARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKK-----IGD--KQT 1790
++L +T T + +A S + + E+ ++ K D ++
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 1791 CT-----IGL--------------YELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQ 1831
T + + ++ +L ++ + +E +R L+
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-YRKMFDR-LSV 380
Query: 1832 MEKNAAAGRTPSSV 1845
+A P+ +
Sbjct: 381 FPPSA---HIPTIL 391
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 1e-09
Identities = 87/551 (15%), Positives = 161/551 (29%), Gaps = 148/551 (26%)
Query: 2 SEE-EKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
EE + ++ + RL W + ++ + + + L
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLF---WTLLSKQEEMVQKFVEEVLRI------NYKFLMSPI 98
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAK-EVCDAIAAKCLTGRPKTVEKAQAVFML 119
+ P I D +AK V R + K + +
Sbjct: 99 KTEQRQPSMMT--RMYIEQRDRLYNDNQVFAKYNVS----------RLQPYLKLRQALL- 145
Query: 120 WVELE-AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFG------AKIIPPKRILKM 172
EL A +V +D + + K VA V + V Q +F P+ +L+M
Sbjct: 146 --ELRPAKNVLIDGVLGSGKTWVALDVCLSYKV--QCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 173 LPELFDHQDQNVRASSKGL-TLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSG-- 229
L +L D N + S ++L + ++ +L K + L V L+NV
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---ENCLLV-LLNVQNAK 257
Query: 230 -------------TARP---TRKIRAEQDKELGQELISEDVGPGPSEE--------STAD 265
T R T + A + + S + P + D
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 266 VPPEIDEYELVDPVDILTPLEKSGFWEGVK--ATKWSE-RKDAVAELTKL--ASTKRIAP 320
+P E+ + P S E ++ W + +LT + +S + P
Sbjct: 318 LPREV--------LTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 321 GDFTEVCRTLKKLITDVNIAVAV----------EAIQAIGNL--ARGLRTHFSGSSRFLL 368
++ ++ L +I + + + N L S +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKN-------------- 414
P + +LK K A+H+ ++VD KT +
Sbjct: 429 PSIYLELKVKLE--------NEYALHR----SIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 415 ------------KVPLVRSLTLN--WV--------TFCIETSSKAAVL---KVHKDYVPI 449
++ L R + L+ ++ T + S L K +K Y+
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI-- 534
Query: 450 CMECLNDGTPE 460
C ND E
Sbjct: 535 ---CDNDPKYE 542
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 3e-08
Identities = 87/606 (14%), Positives = 175/606 (28%), Gaps = 169/606 (27%)
Query: 582 EDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEI 641
+D+ S +S EEI+ + S D V W + +++ VE V L + +
Sbjct: 39 QDMPKSILSKEEIDHIIMS---KDAVSGTLRLFWTLLSKQEEMVQKFVEEV--LRINYKF 93
Query: 642 LVRLVCMLPGWSEKNVQ---VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKT 698
L+ + Q + + IE + L F K V + ++
Sbjct: 94 LMS------PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-----RLQPYLKLRQ 142
Query: 699 RA-----------HAMK-----CLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWM 742
+ + + +K + I W+
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVA--LDVC-------------LSYKVQCKMDFKIFWL 187
Query: 743 VSAVEDFGVSH---LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA 799
+ + L+ L ++ + ++ IKL +H + +++ L
Sbjct: 188 -----NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR--IHS-IQAELRRLLK 239
Query: 800 --DVKPALLSALDAEYEK---NPFEG---TVVPKKTVRASESTSSVSSGGSDGLPREDIS 851
+ LL L N F ++ T R + T +S+ + + + S
Sbjct: 240 SKPYENCLL-VLLNVQNAKAWNAFNLSCKILL---TTRFKQVTDFLSAATTTHISLDHHS 295
Query: 852 GKFTPT-----LVKSLE-------------SP-----------DWKVRLE-----SIEAV 877
TP L+K L+ +P D + + + +
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 878 NKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITL---------GAVASAMGP 928
I+E + ++PA ++F L ++ + ++ L + V + +
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 929 --AVEKSSKG---VLSDI---LKCLGDNKK--HMR--------------ECTLTVLD--- 961
VEK K + I LK +N+ H + LD
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFD--WLSKQL-------TGLSGFPDAAH 1012
HL + + R D +L +++ +
Sbjct: 474 YSHIGHHLKNIEH--------PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI-QGPALALILER--IKL 1069
LK + D + A I++ L + I D+ + +AL+ E I
Sbjct: 526 QLKFYKPYICDNDPKYERLVNA-ILDFLPKIEENLICSKYTDLLR---IALMAEDEAIFE 581
Query: 1070 NGASQV 1075
QV
Sbjct: 582 EAHKQV 587
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 78.9 bits (194), Expect = 8e-15
Identities = 99/633 (15%), Positives = 198/633 (31%), Gaps = 89/633 (14%)
Query: 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG--------MRPLERSIEKLDDVRRNKL 496
+ + ++ L + ++R + L+ IA ++G + L +I D+V L
Sbjct: 10 YPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL-AL 68
Query: 497 SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKK 556
+E + V V + S+ E + VR A L + S
Sbjct: 69 AEQLGTFTTLVG---GPEYVHCLLPPLESLATVEETVVRDKAVESL--RAISHEHSPSDL 123
Query: 557 GGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAV-- 614
P K+ G TS+ + R+ S + A+ ++
Sbjct: 124 EAHFVPLVKRLAGGDWFTSRTSAC--------GLFSVCYPRVSSAVKAELRQYFRNLCSD 175
Query: 615 --WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAA 672
R A S L + + ++ + EI+ + S++ V+ +E
Sbjct: 176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLA---SDEQDSVRLLAVEA---CVN 229
Query: 673 TATKFPKKCVVLCLLGISERVA---DIKTRAHAMKCLTTFSEAVGPGFIFERL---YKIM 726
A P++ + ++ + A + R T +AVGP L ++ +
Sbjct: 230 IAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL 289
Query: 727 KDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATRNATIKLL 783
+V + + E+ + + ++ K+ + + ++A ++
Sbjct: 290 MKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVI 348
Query: 784 GALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 843
L +G D + + P L+ L E + V + + + V
Sbjct: 349 MGLSPILGKDN--TIEHLLPLFLAQLKDECPE-------VRLNIISNLDCVNEV------ 393
Query: 844 GLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR 903
+ +S P +V+ E W+VRL IE + + + +L
Sbjct: 394 -IGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDE---KLNSLCMAW 449
Query: 904 LYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAW 963
L D + A L + G E + ++ +L GD R TL ++
Sbjct: 450 LVDHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVL 507
Query: 964 LAAVHLD----KMVPYVTTALTD---------AKLGAEGRKDLFDWLSKQLTGLSGFPDA 1010
D M+P V D AK + + L
Sbjct: 508 SEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK----IGPILDNS--------TL 555
Query: 1011 AHLLKPA-SIAMTDKSSDVRKAAEACIVEILRA 1042
+KP D+ DV+ A+ + + A
Sbjct: 556 QSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA 588
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 76.2 bits (187), Expect = 5e-14
Identities = 71/477 (14%), Positives = 152/477 (31%), Gaps = 51/477 (10%)
Query: 14 LPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKAL 73
LP+ ++ +V L + P+ + L P + V+DKA+
Sbjct: 51 LPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE--YVHCLLPPLESLATVEETVVRDKAV 108
Query: 74 DALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVM 133
++L A + + + G T + +
Sbjct: 109 ESLRAISHEHSPSD---LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL 165
Query: 134 EKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP---KRILKMLPELFDHQDQNVRASSKG 190
+ +N + L EF + I+ M L + +VR +
Sbjct: 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVE 225
Query: 191 LTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELI 250
+ + + + ++ ++ ++ +R + + R + A++ EL + +
Sbjct: 226 ACVNIAQLLPQEDLEALVMPTLRQAAEDKSW-----------RVRYMVADKFTELQKAV- 273
Query: 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELT 310
PEI + +LV L K E A V E
Sbjct: 274 ----------------GPEITKTDLVP---AFQNLMKDCEAEVRAAAS-----HKVKEFC 309
Query: 311 KLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370
+ S +++ +K+L++D N V I L+ L + LLP+
Sbjct: 310 ENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DNTIEHLLPL 367
Query: 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV--DVVEDVKTSVKNKVPLVRSLTLNWVT 428
L +LK++ P V ++ L +++ + + ++ + ++ VR + ++
Sbjct: 368 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 427
Query: 429 FCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI 485
+ +CM L D +R+AA S L + + G +I
Sbjct: 428 LLAGQLGVEFF---DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATI 481
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 4e-11
Identities = 59/482 (12%), Positives = 156/482 (32%), Gaps = 52/482 (10%)
Query: 590 SLEEIESRLGS------LIPADTVGQLKSAVWKE---RLEAISSLRQQVEAVQNLDQSVE 640
L I LG L+P L ++ E L L V +
Sbjct: 33 KLSTIALALGVERTRSELLPF-----LTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHC 87
Query: 641 ILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRA 700
+L L + + + V+ + +E + ++ + + + + +R+A
Sbjct: 88 LLPPLESLA---TVEETVVRDKAVESLRAISH---EHSPSDLEAHFVPLVKRLAGGDWFT 141
Query: 701 HAMKCLTTFSEAVGPG-----FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK 755
FS + ++ + P V + + + ++K
Sbjct: 142 SRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVK 201
Query: 756 LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 815
++I + + R ++ + + + + A V P L A + + +
Sbjct: 202 -SEIIPMFSN-LASDEQDSVRLLAVEACVNIAQLLPQE--DLEALVMPTLRQAAEDKSWR 257
Query: 816 NPFEGTVVPKKTVR--ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLES 873
VR ++ + + + E P ++ + +VR +
Sbjct: 258 ------------VRYMVADKFTELQKA----VGPEITKTDLVPAFQNLMKDCEAEVRAAA 301
Query: 874 IEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 932
V + E + + ++ ++ + D+N+++ A + ++ +G +
Sbjct: 302 SHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DN 359
Query: 933 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEG--R 990
+ + +L L L D +R ++ LD + + ++ + A+ + A+ R
Sbjct: 360 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVR 419
Query: 991 KDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050
+ +++ L L + D +R+AA + + +++ G+E
Sbjct: 420 LAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHA 479
Query: 1051 NL 1052
+
Sbjct: 480 TI 481
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 5e-11
Identities = 77/461 (16%), Positives = 148/461 (32%), Gaps = 49/461 (10%)
Query: 610 LKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINY 669
L++ + RL +I L A+ E+L L + + E V + +
Sbjct: 19 LRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI--YDEDEVL-----LALAEQ 71
Query: 670 LAATATKFPKKCVVLCLLGISERVA---DIKTRAHAMKCLTTFSEAVGPGFIFERLYKIM 726
L T V CLL E +A + R A++ L S P + ++
Sbjct: 72 LGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLV 131
Query: 727 K--DHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATRNATIK 781
K + + S S +K + + C D R A
Sbjct: 132 KRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSD-----DTPMVRRAAAS 186
Query: 782 LLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGG 841
LG K + D +++ P + E + V V A + + +
Sbjct: 187 KLGEFAKVLELDN--VKSEIIPMFSNLASDEQDS-------VRLLAVEACVNIAQL---- 233
Query: 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901
LP+ED+ PTL ++ E W+VR + ++ + I +L +
Sbjct: 234 ---LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKT---DLVPAFQ 287
Query: 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRECTLTV 959
+ D + A + + ++ +L I + + D +H++ +V
Sbjct: 288 NLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV 347
Query: 960 LDAWLAAV-----HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLL 1014
+ L+ + ++ ++P L D E R ++ L + + LL
Sbjct: 348 IMG-LSPILGKDNTIEHLLPLFLAQLKD--ECPEVRLNIISNLDCVNEVIGIRQLSQSLL 404
Query: 1015 KPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055
D VR A + + G E ++ L +
Sbjct: 405 PAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL 445
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 3e-10
Identities = 63/466 (13%), Positives = 136/466 (29%), Gaps = 64/466 (13%)
Query: 22 HKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLK 81
VR A L + DN E+ P+F +D V+ A++A + +
Sbjct: 175 DDTPMVRRAAASKLGEFAKVL--ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQ 232
Query: 82 AADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKN-- 139
+ V + + F + ++ + A +N
Sbjct: 233 LLPQED--LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM 290
Query: 140 -----KVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLE 194
+V A + + LS + + +IL + EL +Q+V+++ + +
Sbjct: 291 KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMG 350
Query: 195 LCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD--KELGQELISE 252
L +GKD L +K E V I + +G +S+
Sbjct: 351 LSPILGKDNTIEHLLPLFLAQLKDECP----EVRLNI-----ISNLDCVNEVIGIRQLSQ 401
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
+ P + L + KW R + + L
Sbjct: 402 SLLP------------------------AIVELAEDA--------KWRVRLAIIEYMPLL 429
Query: 313 ASTKRIAPGDFTE-VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVL 371
A ++ F E + + D A+ A + L ++ ++P +
Sbjct: 430 A--GQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA--HATIIPKV 485
Query: 372 LEKLKEKKPTVAESLTQTLQAMHKAGCLNLV--DVVEDVKTSVKNKVPLVRSLTLNWVTF 429
L + + + + + ++ ++ V + V VR +
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 545
Query: 430 CIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
+ + + PI + D +V+ A L ++ +
Sbjct: 546 IGPILDNSTL---QSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA 588
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 7e-08
Identities = 88/640 (13%), Positives = 179/640 (27%), Gaps = 126/640 (19%)
Query: 768 LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKT 827
L++ R +IK L + +G + +++ P L + E E
Sbjct: 19 LRNEDVQLRLNSIKKLSTIALALGVER--TRSELLPFLTDTIYDEDE------------- 63
Query: 828 VRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
V + + + + + + P L + VR +++E++ I E
Sbjct: 64 VLLALAEQLGTF--TTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE---- 117
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLV-MATLITLGAVASAMGPAVEKSSKGVLSDILKCLG 946
P+ F L RL + + + AV+ +
Sbjct: 118 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE---LRQYFRNLCS 174
Query: 947 DNKKHMRECTLTVLDAWLAAV----HLDKMVPYVTTALTD-----------------AKL 985
D+ +R + L + + +++P + +D L
Sbjct: 175 DDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234
Query: 986 GAEGRKDLFDWLSKQLTG----------LSGFPDAAHLLKPASIA----------MTDKS 1025
E + L +Q F + + P M D
Sbjct: 235 PQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCE 294
Query: 1026 SDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSS 1085
++VR AA + E + E ++ IL IK S ++
Sbjct: 295 AEVRAAASHKVKEFCENLSADCREN-------VIMSQILPCIKEL---------VSDANQ 338
Query: 1086 KVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERM 1145
V + ++ + I + + + V+ + N+ N+
Sbjct: 339 HVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE------ 392
Query: 1146 VVRRFKFEDPRIEQIQELENDMMKYFRE-------DLHRRLLSTDFKKQVDGL--EMLQK 1196
V+ + + I EL D R L +L F ++++ L L
Sbjct: 393 VIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD 452
Query: 1197 ALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAV 1256
+ +IR+ L L+ F ++ + +P++ D Y +
Sbjct: 453 HVYAIREAATSNLKKLVEKFGKEWAHA---------TIIPKVLAMSGDPNYLHRMT-TLF 502
Query: 1257 FLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVG 1316
+ L E G TK + LP +L R +
Sbjct: 503 CINVLSEVCG---------QDITTKHM---------LPTVLRMAGDPVANVRFNVAKSLQ 544
Query: 1317 FLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLA 1356
+ I+ LT ++D +++ A L
Sbjct: 545 KIGPILDNSTLQSEV-KPILEKLTQDQDVDVKYFAQEALT 583
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 8e-08
Identities = 98/634 (15%), Positives = 206/634 (32%), Gaps = 105/634 (16%)
Query: 277 DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD---FTEVCRTLKKL 333
D D L P+ + ++ R +++ +L+ +A A G +E+ L
Sbjct: 4 DGDDSLYPIAV--LIDELRNEDVQLRLNSIKKLSTIAL----ALGVERTRSELLPFLTDT 57
Query: 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAM 393
I D + V + + +G + LLP L ++ V + ++L+A+
Sbjct: 58 IYDEDE-VLLALAEQLGTFTTLV--GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI 114
Query: 394 HKAGCLNLVDVVEDVKTSV----KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449
+ + D+ V R+ + C S A V +
Sbjct: 115 --SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----VKAELRQY 168
Query: 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI-----EKLDDVRRNKLSEMIAGSG 504
+D TP VR AA S L AK + + ++ I D ++ + + +
Sbjct: 169 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASD-EQDSVRLLAVEAC 227
Query: 505 GDVATGTSSARVQTSGGSVPSVEA---SESSFVRKSAASMLSGKRPVSAAPASKKGGPVK 561
++A ++ +P++ +S VR A +
Sbjct: 228 VNIAQLLPQEDLEAL--VMPTLRQAAEDKSWRVRYMVADKFT------------------ 267
Query: 562 PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEA 621
+L +A E++ ++ +L +K + R A
Sbjct: 268 --------------ELQKA----VGPEITKTDLVPAFQNL--------MKDCEAEVRAAA 301
Query: 622 ISSLRQQVEAVQNLDQSVEILVRLV-CMLPGWSEKNVQVQQQVIEVINYLAATATK--FP 678
+++ E + + I+ +++ C+ S+ N V+ + VI L+ K
Sbjct: 302 SHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTI 361
Query: 679 KKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPG----FIFERLYKIMKDHKNPKV 734
+ + L L + + ++ R + + L +E +G + + ++ +D +V
Sbjct: 362 EHLLPLFLAQLKDECPEV--RLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDA-KWRV 418
Query: 735 LSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794
I +M GV + L C L A R A L L + G +
Sbjct: 419 RLAIIEYMPLLAGQLGVEFFD-EKLNSLC-MAWLVDHVYAIREAATSNLKKLVEKFGKE- 475
Query: 795 KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKF 854
++ + A P R +T + S+ ++ +
Sbjct: 476 -----WAHATIIPKVLAMSGD--------PNYLHR--MTTLFCINVLSEVCGQDITTKHM 520
Query: 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRI 888
PT+++ P VR +++ KI +
Sbjct: 521 LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST 554
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 7e-07
Identities = 68/474 (14%), Positives = 150/474 (31%), Gaps = 71/474 (14%)
Query: 969 LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDV 1028
+++P++T + D E L + L T + G LL P T + + V
Sbjct: 47 RSELLPFLTDTIYDED---EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVV 103
Query: 1029 RKAAEACIVEILRAGGQETIEKNL------------KDIQGPALALILERI-KLNGASQV 1075
R A + I +E + + A L +++ A +
Sbjct: 104 RDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA 163
Query: 1076 SMGPT-----SKSSSKVPKSASNGVSK----HGNRAISSRVIP--TKGARPESIMSVQDF 1124
+ S + V ++A++ + + + S +IP + A E SV+
Sbjct: 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQD-SVRLL 222
Query: 1125 AVQSQALLNVKDSNKEDRERMV--VRRFKFEDP----RIEQIQELENDMMKYFREDLHRR 1178
AV++ + ++ ++ +R+ ED R + + K ++ +
Sbjct: 223 AVEACVNIAQLLPQEDLEALVMPTLRQA-AEDKSWRVRYMVADKFTE-LQKAVGPEITKT 280
Query: 1179 LLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPEL 1238
L F +++ +R + ++ + + + LP +
Sbjct: 281 DLVPAF------QNLMKDCEAEVRAAASHKVKEFCENLS-----ADCRENVIMSQILPCI 329
Query: 1239 FDTLRDEGYSLTESEAAVF----------------LPCLVEKSGHNIEKVREKMRELTKQ 1282
+ + D + + A+V LP + + +VR +
Sbjct: 330 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389
Query: 1283 IVNFYSATKT----LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVAS 1338
+ + LP I+E R R+ ++ + L G E K + +
Sbjct: 390 VNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF-DEKLNSLCMA 448
Query: 1339 LTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWKVREM 1392
+ IR+AA + L + G++ + +M D + R
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDP-NYLHRMT 499
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 2e-05
Identities = 92/596 (15%), Positives = 186/596 (31%), Gaps = 105/596 (17%)
Query: 856 PTLVKSLESPDWKVRLESIEAVNKIL-----EEANKRIQPAGTGELFGGLRGRLYDSNKN 910
L+ L + D ++RL SI+ ++ I E + P L +YD ++
Sbjct: 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPF--------LTDTIYDEDEV 64
Query: 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA---WLAAV 967
L+ LG + +G + +L + + +R+ + L A +
Sbjct: 65 LLAL-AEQLGTFTTLVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS 121
Query: 968 HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA------- 1020
L+ + L DW + + + F + A A
Sbjct: 122 DLEAHFVPLVKRLAGG-----------DWFTSRTSACGLFSVCYPRVSSAVKAELRQYFR 170
Query: 1021 --MTDKSSDVRKAAEACIVEILRAGGQETIE--------KNLKDIQGP---ALALILERI 1067
+D + VR+AA + + E + + ++ D Q I
Sbjct: 171 NLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNI 230
Query: 1068 KLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
A + + A+ S ++ + + A I D
Sbjct: 231 ----AQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK-TDLVPA 285
Query: 1128 SQALLNVKDSNKEDRERM---------VVRRFKFEDPRIEQI----QELENDMMKYFRED 1174
Q L+ KD E R + E+ + QI +EL +D ++ +
Sbjct: 286 FQNLM--KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSA 343
Query: 1175 LHRRL--LSTDFKKQV---DGLEMLQKAL----PSIRKDIIEVLDILLRWF-VLQFCKSN 1224
L + LS K L + L P +R +II LD + + Q +S
Sbjct: 344 LASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403
Query: 1225 TTCLLK------------VLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKV 1272
+++ ++E++P L L E + + ++ +
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF------DEKLNSLCMAWLVDHVYAI 457
Query: 1273 REKMRELTKQIVNFYSATKT----LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISG 1328
RE K++V + +P +L N R+ + + L + G +I+
Sbjct: 458 REAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT 517
Query: 1329 QLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDR 1384
+ L V + + +R +L IL + ++ + + D+
Sbjct: 518 K-HMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQS--EVKPILEKLTQDQ 570
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 65.1 bits (158), Expect = 2e-11
Identities = 41/220 (18%), Positives = 90/220 (40%), Gaps = 22/220 (10%)
Query: 299 WSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLR 357
W+ K+A++ + +A T+ + + + L L+ I + E +A G +A+
Sbjct: 46 WTVVKNAISIIMVIAKTR---EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102
Query: 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVP 417
++PVL + +++ L+ + KA + + +V D + + +K
Sbjct: 103 ELVKS----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNR 158
Query: 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477
+ LN++ E S K ++P + L+DG VR +A L +A
Sbjct: 159 EDKLTALNFIEAMGENSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLND 213
Query: 478 --MRPLERSIEKLDD----VRR---NKLSEMIAGSGGDVA 508
+ + + +E+L+D V + +S ++ G +
Sbjct: 214 KLRKVVIKRLEELNDTSSLVNKTVKEGISRLLLLEGHSSS 253
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 8e-05
Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 16/187 (8%)
Query: 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMAT 915
L++ L+ W V +I + I + +P + L L S +
Sbjct: 35 KKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQE 89
Query: 916 LITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPY 975
+ M + K ++ + + + L+ +A + M
Sbjct: 90 IAKAFG---QMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEE-IAKANPMLMASI 145
Query: 976 V---TTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAA 1032
V + L+ E + +++ G + F L + D VR +A
Sbjct: 146 VRDFMSMLSSKN--REDKLTALNFIEAM--GENSFKYVNPFLPRIINLLHDGDEIVRASA 201
Query: 1033 EACIVEI 1039
+V +
Sbjct: 202 VEALVHL 208
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 62.1 bits (150), Expect = 2e-09
Identities = 88/726 (12%), Positives = 208/726 (28%), Gaps = 111/726 (15%)
Query: 316 KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR-GLRTHFSGSSRFLLPVLLEK 374
+ G + I D + + I +A G ++ LLP L
Sbjct: 81 QNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPD----LLPKLCSL 136
Query: 375 LKEKKP-----------TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLT 423
L + + E + L + LN++ + K+ P +RS
Sbjct: 137 LDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM--IPKFLQFFKHSSPKIRSHA 194
Query: 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG--MRP- 480
+ V I + ++A ++ ++ D PEVR L + + + P
Sbjct: 195 VACVNQFIISRTQA-LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 253
Query: 481 --------LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS 532
L+R+ ++ ++V + +E
Sbjct: 254 MHNIVEYMLQRTQDQDENVALEACEFWLT--------------------------LAEQP 287
Query: 533 FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMS-- 590
+ L PV + + + D S+ +
Sbjct: 288 ICKDVLVRHLPKLIPVLVNGMKYSDIDIIL---------LKGDVEGGSGGDDTISDWNLR 338
Query: 591 ------LEEIESRLGSLIPADTVGQLK----SAVWKERLEAISSLRQQVEA-----VQNL 635
L+ + + + + LK W + I L E + L
Sbjct: 339 KCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL 398
Query: 636 DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAAT-ATKFPKKCVVLCLLGISERVA 694
+ + L++ + S+K V+ ++ A ++ P + + + +R+
Sbjct: 399 PELIPHLIQCL------SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL 452
Query: 695 D--IKTRAHAMKCLTTFSEAVGPGF------IFERLYKIMK--DHKNPKVLSEGILWMVS 744
D + + A T E I + L HKN +L + I +
Sbjct: 453 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 512
Query: 745 AVEDFGVSHLKLKDLIDFCKDT-GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKP 803
+V ++ L+ + ++ L ++ + + V
Sbjct: 513 SVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ 572
Query: 804 ALLSAL------DAEYEKNPFEGTVVPKKTVRASEST-SSVSSGGSDGLPREDISGKFTP 856
++ + P + K + + S ++ G + +
Sbjct: 573 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILT 632
Query: 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 916
+ + ++ +VR S + + + + ++P + L L ++
Sbjct: 633 LMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC-IADFMPILGTNLNPEFISVCNNAT 691
Query: 917 ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH--MRECTLTVLDAWLAAVHLDKMVP 974
+G ++ MG ++ VL +++ + + E T + L V ++ P
Sbjct: 692 WAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITI-GRLGYVCPQEVAP 750
Query: 975 YVTTAL 980
+ +
Sbjct: 751 MLQQFI 756
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 9e-06
Identities = 56/436 (12%), Positives = 122/436 (27%), Gaps = 48/436 (11%)
Query: 577 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD 636
L + ED S + ++ L +IP + K + K R A++ + Q + +
Sbjct: 152 LQKICEDSAEILDS-DVLDRPLNIMIPK-FLQFFKHSSPKIRSHAVACVNQFIISRTQAL 209
Query: 637 QSV--EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK----KCVVLCLLGIS 690
+ L + ++ +V++ V + L V L
Sbjct: 210 MLHIDSFIENLFALA---GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ 266
Query: 691 ERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG 750
+ D A + T +E + + K + PK++ + M + D
Sbjct: 267 D--QDENVALEACEFWLTLAE--------QPICKDVLVRHLPKLIPVLVNGMKYSDID-- 314
Query: 751 VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALD 810
+ LK D + R + L L ++ + + LL +
Sbjct: 315 IILLKGDVEGGSGGDDTISDWN--LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHE 372
Query: 811 AEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVR 870
+++ G G+ + P L++ L VR
Sbjct: 373 -------------WVVKESGILVLGAIAEGCMQGM--IPYLPELIPHLIQCLSDKKALVR 417
Query: 871 LESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 930
+ +++ + L L R+ DSNK + A + +
Sbjct: 418 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL 477
Query: 931 EKSSKGVLSDILKCLGDNKKHMRECTLTVL--------DAWLAAVHLDKMVPYVTTALTD 982
+L ++ + + ++ ++P +
Sbjct: 478 VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM 537
Query: 983 AKLGAEGRKDLFDWLS 998
K + L + LS
Sbjct: 538 LKDEDKDLFPLLECLS 553
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 62.0 bits (149), Expect = 2e-09
Identities = 139/1073 (12%), Positives = 306/1073 (28%), Gaps = 96/1073 (8%)
Query: 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAE 384
+V + + KL+ D N V A++ +G L ++ + ++ L + K + +
Sbjct: 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVETIVDTLCTNMLSDKEQLRD 104
Query: 385 SLTQTLQAMHKA------GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE----TS 434
+ L+ + G +V + + + + + +++ I +
Sbjct: 105 ISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164
Query: 435 SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-------MRPLERSIEK 487
++ H + + L VR L + S G + L + K
Sbjct: 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSK 224
Query: 488 LDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRP 547
D + + + A ++ V + +R+
Sbjct: 225 NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 284
Query: 548 VSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV 607
+ K + + + ++ E + + + GS
Sbjct: 285 RCPKEVYPHVSTIINICLK--YLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD- 341
Query: 608 GQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPG-WSEKNVQVQQQVIEV 666
WK R A L V + E + L + E+ V+ V
Sbjct: 342 --DDDMSWKVRRAAAKCLDAVVSTRHEMLP--EFYKTVSPALISRFKEREENVKADVFHA 397
Query: 667 INYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIM 726
++ + + D LT V I + L+K M
Sbjct: 398 Y------------LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPN--IVKALHKQM 443
Query: 727 KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAAT--RNATIKLLG 784
K+ K+ K + V + + ++ L ++++ + + L
Sbjct: 444 KE-KSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLY 502
Query: 785 ALHKFVGPD-IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 843
+ P + + P +++ + + K E +V ++ V+ SS +
Sbjct: 503 VILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDA- 561
Query: 844 GLPREDISGKFTPTLVKSLESPD--WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901
+K L++ D +V+ +I + +I+ +
Sbjct: 562 ----TPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD-LPNTLQIFL 616
Query: 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
RL + L +TL A S + + + + L N++ ++ TL+ LD
Sbjct: 617 ERLKNEITRLTTVKALTLIA-GSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALD 675
Query: 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1021
+ L A + D L ++ H+ + A +
Sbjct: 676 ILIKNYS--------------DSLTAAMIDAVLDELPPLIS-----ESDMHVSQMAISFL 716
Query: 1022 TDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTS 1081
T + + IL L+ A+ + + + G + +
Sbjct: 717 TTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLL 776
Query: 1082 KSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKED 1141
+ + S S ++ + ++ + A + AV Q + +VK+S D
Sbjct: 777 RMLTGPVYSQSTALTHKQSYYSIAKCV----AALTRACPKEGPAVVGQFIQDVKNSRSTD 832
Query: 1142 RERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSI 1201
R++ E + E+ A ++
Sbjct: 833 SIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSS------------PSEEVKSAASYAL 880
Query: 1202 RKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCL 1261
+ L L + + + L L L + + + L
Sbjct: 881 GSISVGNLPEYLPFVLQEITSQPKRQYL----LLHSLKEIISSASVVGLKPYVENIWALL 936
Query: 1262 VEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDH 1321
++ E R + E ++ T LP + L S ++ R V V F I
Sbjct: 937 LKHCECAEEGTRNVVAECLGKLTLIDPET-LLPRLKGYLISGSSYARSSVVTAVKFTISD 995
Query: 1322 HGAEISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKL 1373
H I LK+ + + D +R+ AL T + I + +
Sbjct: 996 HPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1048
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 49.7 bits (117), Expect = 1e-05
Identities = 59/523 (11%), Positives = 151/523 (28%), Gaps = 65/523 (12%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKK---------TVADSN 65
P + +K+ +EA + L I + P K AD +
Sbjct: 523 PVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADID 582
Query: 66 APVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCL--TGRPKTVEKAQAVFMLWVEL 123
V+++A+ + + + G + R TV+ + +++
Sbjct: 583 QEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKI 642
Query: 124 EAVDVFLDVME---KAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP--KRILKMLPELFD 178
+ V + + ++ + + + + + + +L LP L
Sbjct: 643 DLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLIS 702
Query: 179 HQDQNVRASSKGLTLELCRWIGK------DPVKTILFEKMRDTMKKELEVELVNVSGTAR 232
D +V + L + + L +R + + + + A
Sbjct: 703 ESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQAL 762
Query: 233 PTRKIRAEQDKELGQELISEDVGPGPS---EESTADVPPEIDEYELVDPVDILTPLEKSG 289
+L + L + ++S + + P + + +
Sbjct: 763 VVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQ-- 820
Query: 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAI 349
F + VK ++ ++ +A L+ I E+ + + + + V A A+
Sbjct: 821 FIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYAL 880
Query: 350 GNLARG----------------------------------LRTHFSGSSRFLLPVLLEKL 375
G+++ G + +LL+
Sbjct: 881 GSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHC 940
Query: 376 KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435
+ + + + L + ++ ++ +K + + RS + V F I
Sbjct: 941 ECAEEGTRNVVAECLGKL---TLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHP 997
Query: 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478
+ + + K+ + ++ L D VR A + A +
Sbjct: 998 QP-IDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPS 1039
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 46.6 bits (109), Expect = 9e-05
Identities = 92/709 (12%), Positives = 228/709 (32%), Gaps = 79/709 (11%)
Query: 23 KNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKA 82
+WKVR A L A+ + + + + P + V+ A ++ LK
Sbjct: 345 MSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQ 404
Query: 83 ADADAGRYAKEVCDAIAAKCLTG----------------RPKTVEKAQAVFMLWVELEAV 126
LT + K+V+ Q F + EL V
Sbjct: 405 TRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV 464
Query: 127 ---------DVFLDVMEKAIKNKVAKAVV--PAIDVMFQALSEFGAKIIPP--KRILKML 173
V + + ++ +K + + + A+ ++ L ++ P + ++ +
Sbjct: 465 LPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPV 524
Query: 174 PELFDHQDQNVRASSKGLTLELCRWIG----------KDPVKTILFEKM----RDTMKKE 219
+ + + +T +L + I +K + + + +E
Sbjct: 525 VACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQE 584
Query: 220 LEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPV 279
++ ++ G D ++ E + + +T I L +
Sbjct: 585 VKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDL 644
Query: 280 DILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITDV 337
+ ++ + + + ++ L L + V L LI++
Sbjct: 645 RPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISES 704
Query: 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEK--KPTVAESLTQTLQAMHK 395
++ V+ AI + LA+ + S S +L L+ ++ + ++ QA+
Sbjct: 705 DMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVV 764
Query: 396 AG--CLNLVDVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME 452
G L +D++ + V + L + + C+ ++A + +
Sbjct: 765 TGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQD 824
Query: 453 CLNDGTPE-VRDAAFSVLAAIAKSVGMRP---LERSIEKLDDVRRNKLSEMIAGSGGDVA 508
N + + +R A L + + + L+ I + ++ + + G ++
Sbjct: 825 VKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSIS 884
Query: 509 TGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDG 568
G +P V +S ++ + S K +S+A V+
Sbjct: 885 VGNLPEY-------LPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENI----- 932
Query: 569 SGKQETSKLTEAPEDVEPSEMSL-EEIESRLGSLIPADTVGQL----KSAVWKERLEAIS 623
+ L + E E ++ E +L + P + +L S R ++
Sbjct: 933 -----WALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVT 987
Query: 624 SLRQQV-EAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLA 671
+++ + + Q +D ++ + L + ++ V++ + N A
Sbjct: 988 AVKFTISDHPQPIDPLLKNC--IGDFLKTLEDPDLNVRRVALVTFNSAA 1034
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 9e-08
Identities = 48/423 (11%), Positives = 132/423 (31%), Gaps = 42/423 (9%)
Query: 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQV-EAVQNL-------DQSVEILV 643
++ R + + + Q+K+ + + + + + E++
Sbjct: 78 QQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMK 137
Query: 644 RLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF-------PKKCVVLCLLGISERVADI 696
+V +E+ V++ + + Y+ +A ++ + G
Sbjct: 138 IMVDNTG--AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSK 195
Query: 697 KTRAHAMKCLTTFSEAVGPGFIFERLYKIM-------KDHKNPKVLSEGILWMVSAVEDF 749
R A+ L + E + ++ +V + + + +
Sbjct: 196 AVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY 255
Query: 750 GVSHLK--LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLS 807
+ +K ++ + ++S + T++ + + DI LA + L
Sbjct: 256 -YTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEE-IDIAYELAQFPQSPLQ 313
Query: 808 ALDAEYEKNPFEGTVVPKKTVRASE----STSSVSSGGSDGL------PREDISGKFTPT 857
+ + + R +E +VS L I
Sbjct: 314 SYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEF 373
Query: 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLI 917
+ +++ + +W+ R ++ A I++ +K + + + + D + + T
Sbjct: 374 VEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAW 433
Query: 918 TLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRE--CTLTVLDAWLAAVHLDKMV 973
+G +A ++ +++ GV+ L L D+ K T+ L LA +
Sbjct: 434 CIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIY 493
Query: 974 PYV 976
+
Sbjct: 494 NFY 496
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 6e-05
Identities = 35/206 (16%), Positives = 67/206 (32%), Gaps = 21/206 (10%)
Query: 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLA 353
+ R + +E+ + I L K I D A A
Sbjct: 23 LSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAMQAVAHIANQ 82
Query: 354 RGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK 413
L L+P + K + ++TL ++ +N ++K
Sbjct: 83 SNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISI--VNAVNP--------VAIK 132
Query: 414 NKVP-LVRSL--TLNWVTFC--------IETSSKAAVLKVHKDYVPICMECLNDGTPEVR 462
+P L ++ T W + ++K V + +P+ E + D EV+
Sbjct: 133 ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVK 192
Query: 463 DAAFSVLAAIAKSVGMRPLERSIEKL 488
AA + + ++V + +ER I L
Sbjct: 193 AAATAAMTKATETVDNKDIERFIPSL 218
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 8e-04
Identities = 36/270 (13%), Positives = 89/270 (32%), Gaps = 24/270 (8%)
Query: 683 VLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWM 742
++ ++ + + D + R A++ L I Y+ M+ + P + I
Sbjct: 218 IMQVVCEATQCPDTRVRVAALQNLVK---------IMSLYYQYMETYMGPAL--FAITIE 266
Query: 743 VSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVK 802
+ V+ ++ + C + + A+ + KF +L +
Sbjct: 267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326
Query: 803 PALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL 862
L+ D + + + +A+ + + +DI P + + +
Sbjct: 327 TQTLTKQDENDDDDDWN-------PCKAAGVCLMLLAT----CCEDDIVPHVLPFIKEHI 375
Query: 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV 922
++PDW+ R ++ A ILE + L + D + + T+G +
Sbjct: 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435
Query: 923 ASAMGPAVEKSS--KGVLSDILKCLGDNKK 950
+ A +L +++ L +
Sbjct: 436 CELLPEAAINDVYLAPLLQCLIEGLSAEPR 465
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1871 | |||
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 100.0 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 100.0 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 100.0 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 100.0 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 99.96 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.96 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 99.95 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.95 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.94 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.93 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.89 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.88 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.87 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.86 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.84 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.82 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.82 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.8 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.22 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.04 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.02 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.84 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 98.68 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 98.65 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 98.62 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 98.58 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 98.56 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 98.52 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.5 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 98.47 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 98.43 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.4 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 98.31 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 98.27 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.25 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.24 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.23 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 98.21 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 98.2 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 98.19 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.1 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.08 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.08 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 98.04 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.02 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.01 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.83 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 97.8 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 97.78 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 97.76 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 97.74 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 97.72 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.69 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.69 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 97.63 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 97.59 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 97.57 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 97.53 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 97.49 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 97.48 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.44 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 97.33 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 97.31 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 97.27 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 97.25 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 97.24 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 97.05 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 96.42 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 96.32 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 96.31 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 95.95 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 95.49 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 95.18 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 95.14 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 95.01 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 94.94 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 94.6 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 94.56 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 94.49 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 94.08 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 94.05 | |
| 1mhq_A | 148 | ADP-ribosylation factor binding protein GGA2; supe | 93.69 | |
| 3g2s_A | 149 | C-terminal fragment of sortilin-related receptor; | 93.53 | |
| 1juq_A | 171 | ADP-ribosylation factor binding protein GGA3; prot | 92.94 | |
| 1elk_A | 157 | Target of MYB1; superhelix of helices, endocytosis | 92.17 | |
| 3rru_A | 152 | TOM1L1 protein; structural genomics, PSI-biology, | 92.17 | |
| 1dvp_A | 220 | HRS, hepatocyte growth factor-regulated tyrosine k | 91.56 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 91.14 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 90.91 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 90.64 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 90.6 | |
| 3zyq_A | 226 | Hepatocyte growth factor-regulated tyrosine kinas | 90.31 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 89.51 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 88.83 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 88.47 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 88.31 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 88.3 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 87.08 | |
| 1mhq_A | 148 | ADP-ribosylation factor binding protein GGA2; supe | 86.42 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 86.26 | |
| 3g2s_A | 149 | C-terminal fragment of sortilin-related receptor; | 85.98 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 85.39 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 85.13 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 85.0 | |
| 1juq_A | 171 | ADP-ribosylation factor binding protein GGA3; prot | 85.0 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 84.51 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 82.85 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 82.33 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 81.56 |
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-64 Score=579.72 Aligned_cols=253 Identities=28% Similarity=0.568 Sum_probs=246.5
Q ss_pred cCCCChHHHHh----hhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHhH
Q 000200 1134 VKDSNKEDRER----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVL 1209 (1871)
Q Consensus 1134 ~~~~~K~~R~~----~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~~l 1209 (1871)
..+++|++|++ ++++||+|++||+|+|++|++||.+|++++++.+|||+|||+|++|+|+|++.++++.+++++++
T Consensus 6 ~~~~~K~~R~~~e~~~k~~~w~f~~p~~e~v~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~l 85 (266)
T 2of3_A 6 SDNEDKKQRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNS 85 (266)
T ss_dssp CCSSHHHHHHHHHHTTCSCCSCCSSCCHHHHHHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTH
T ss_pred ecCccHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHH
Confidence 34789999984 45789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhhccCc
Q 000200 1210 DILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA 1289 (1871)
Q Consensus 1210 Dlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~ 1289 (1871)
|++|||+++||||+|++|++++||+|.++|++|.+.+|+|+||||++|||+||+|+||+||.||+.+|+|+++++.+||+
T Consensus 86 Dll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~ 165 (266)
T 2of3_A 86 DLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP 165 (266)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCcccCccchH---HHHHHHhccCChhHHHHHHHHHHHHHHHhchhH
Q 000200 1290 TKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSL---QIVASLTAERDGEIRKAALNTLATGYKILGEDI 1366 (1871)
Q Consensus 1290 skvf~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v~~~~Kal---~~ia~~i~drD~~VR~AALn~l~~~y~~~Gd~v 1366 (1871)
+++|+|+++|++|||||||.|||+||+++|++||+. +.|++ +.||++++|||++||+|||||++++|.++||+|
T Consensus 166 ~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 166 LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999999996 67899 999999999999999999999999999999999
Q ss_pred HHHhccCCHHHHhhHHHHHHHhH
Q 000200 1367 WRYVGKLTDAQKSMLDDRFKWKV 1389 (1871)
Q Consensus 1367 ~k~~g~ls~k~~s~Leer~kr~~ 1389 (1871)
|+++|+|++++++||||||||++
T Consensus 243 ~k~lg~L~~~~~~~l~er~~r~~ 265 (266)
T 2of3_A 243 WKAAGRMADKDKSLVEERIKRTG 265 (266)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHhhcc
Confidence 99999999999999999999975
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=384.66 Aligned_cols=231 Identities=25% Similarity=0.440 Sum_probs=219.8
Q ss_pred CCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHH-hh-hcCCCC--CCChHHHHHHHHHHh-ccccHHHHHH
Q 000200 270 IDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK-LA-STKRIA--PGDFTEVCRTLKKLI-TDVNIAVAVE 344 (1871)
Q Consensus 270 iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~-l~-~~pKi~--~~dy~eL~~~Lkk~l-~DsNv~vv~~ 344 (1871)
.|||||+|||||++|||+ +|++.+.|+||+||++||++|.. ++ +.+++. .++|+++++.|+++| .|+|+.|+..
T Consensus 2 ~~~~d~~~~~~i~~kl~~-~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~ 80 (249)
T 2qk1_A 2 SHMASMLPEETILDKLPK-DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVAL 80 (249)
T ss_dssp CCSCCCCCCBCCGGGSCT-THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHH
T ss_pred CchHhhcChhhhhhhCCh-hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHH
Confidence 489999999999999995 99999999999999999999999 87 689998 789999999999999 5999999999
Q ss_pred HHHHHHHHHHHhc-cccc-cchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcC------CChhhhHHHHHHHhhcCC
Q 000200 345 AIQAIGNLARGLR-THFS-GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC------LNLVDVVEDVKTSVKNKV 416 (1871)
Q Consensus 345 A~~~i~~lA~gLr-~~F~-~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~------~~l~~~~e~i~~al~~Kn 416 (1871)
|++|++.||+||| +.|. +|+..++|+||++|||||+.|++++..||++|+.+ + ..|+++++++..+|+|||
T Consensus 81 A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~-~~~~~~~~~l~~ll~~l~~~l~~k~ 159 (249)
T 2qk1_A 81 AAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY-YDPLASSGRNEDMLKDILEHMKHKT 159 (249)
T ss_dssp HHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH-SCTTCTTCTTHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ccccccCCcHHHHHHHHHHHHcCCC
Confidence 9999999999999 9999 99999999999999999999999999999999997 4 339999999999999999
Q ss_pred chhHHHHHHHHHHHHhhCCh--hHHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHH
Q 000200 417 PLVRSLTLNWVTFCIETSSK--AAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRR 493 (1871)
Q Consensus 417 P~vk~etl~~L~r~l~~~~~--~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk 493 (1871)
|++|.+++.||.+++...+. ..+.+.+ +.++|.+.++++|++++||++|.++|+++++++|++.+.+++.+||+.||
T Consensus 160 ~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~ 239 (249)
T 2qk1_A 160 PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKR 239 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHH
Confidence 99999999999999998765 4566788 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 000200 494 NKLSEMIAG 502 (1871)
Q Consensus 494 ~KI~e~~~~ 502 (1871)
+||++++++
T Consensus 240 ~ki~~~~~~ 248 (249)
T 2qk1_A 240 KKIEETVKT 248 (249)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999999986
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=381.06 Aligned_cols=240 Identities=24% Similarity=0.357 Sum_probs=187.6
Q ss_pred CChhHhhHhhhcCCCcccccCcCchhHHHHHHHHHHHHhhhcCCC--Cc---hhhhhhhhchhhhcCCCCHHHHHHHHHH
Q 000200 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDP--KD---NRIRELGPLFKKTVADSNAPVQDKALDA 75 (1871)
Q Consensus 1 m~~~~~~~~~~~~lpl~erl~hK~WKaRl~ayeel~~~f~~~~d~--~d---~~~~~~~~l~kk~v~DsN~~aqek~lea 75 (1871)
|++||+ .||++|||+|||.|||||+|++|||+|.+.|+..... +| ..|..+..+++|++.|+|++||++++++
T Consensus 1 m~~~e~--~d~sklpl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~ 78 (278)
T 4ffb_C 1 MSGEEE--VDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVA 78 (278)
T ss_dssp ------------CCCHHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHH
T ss_pred CCCcch--hhhhcCCHHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 887554 5899999999999999999999999999999754322 22 2467778899999999999999999999
Q ss_pred HHHHHHHcChhh------hhhhhHHHHHHHHhhhc-CChhhHHHHHHHHHHHHhhcch-hhHHHHHHHHhhccCchhHHH
Q 000200 76 LIAYLKAADADA------GRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV-DVFLDVMEKAIKNKVAKAVVP 147 (1871)
Q Consensus 76 l~~~l~~a~~~~------~~~~~~~~~~lveK~L~-~r~~tk~~a~e~~l~~vE~e~~-~~v~e~ll~~~~~K~PKvvaa 147 (1871)
+..|+..++... ...+..+++.|++|||+ +|+++++.|.++++.++|.... +.+++.++++++|||||++++
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~ 158 (278)
T 4ffb_C 79 LNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAA 158 (278)
T ss_dssp HHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHH
T ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHH
Confidence 999998765432 12356789999999997 6999999999999999998764 788999999999999999999
Q ss_pred HHHHHHHHHHhhCCCccChhH----HHhhchhhhcccChhHHHHHHHHHHHHHHhhCCc--hhhHHHhhhchHHHHHHHH
Q 000200 148 AIDVMFQALSEFGAKIIPPKR----ILKMLPELFDHQDQNVRASSKGLTLELCRWIGKD--PVKTILFEKMRDTMKKELE 221 (1871)
Q Consensus 148 ai~~l~~~l~~FG~~vv~~K~----ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~--~lk~~L~~~Lkp~q~keLe 221 (1871)
|+.||.++|++||++++++++ +++.++++|+|+|++||++|++++++||+|+|+. .+...++++|||+|+++||
T Consensus 159 ~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le 238 (278)
T 4ffb_C 159 AANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLH 238 (278)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHH
Confidence 999999999999999998775 6778999999999999999999999999999964 2334567999999999999
Q ss_pred HHHHhcCCCCCC--cchhhhHHh
Q 000200 222 VELVNVSGTARP--TRKIRAEQD 242 (1871)
Q Consensus 222 ~efek~~~~~~P--~R~~Rs~q~ 242 (1871)
++|+|+.+.++| +|+.+.+++
T Consensus 239 ~~f~k~~~~~~~~~~~~~~~~~~ 261 (278)
T 4ffb_C 239 KLFAKVGDEPSSSKMLFEWEKRE 261 (278)
T ss_dssp HHHSCCCC-------CCHHHHHH
T ss_pred HHHHhcCCCCCCCCcchhhhHhh
Confidence 999999876544 444444333
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-33 Score=318.95 Aligned_cols=231 Identities=29% Similarity=0.467 Sum_probs=218.0
Q ss_pred CccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhhc-CCCCCCChHHHHHHHHHHhc-cccHHHHHHHHHH
Q 000200 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQA 348 (1871)
Q Consensus 271 Dp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~-pKi~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~ 348 (1871)
|||||++||||+++|| ++|++.+.|++|++|++|++.|..+++. +++..++|+++++.|++++. |+|..|+..|++|
T Consensus 2 d~~d~~~~~di~~~l~-~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~ 80 (242)
T 2qk2_A 2 SHMDLLDPVDILSKMP-KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKC 80 (242)
T ss_dssp HHHHTTSCBCCGGGSC-TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CHHHhCCcccccccCC-HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 8999999999999999 5899999999999999999999998865 88888899999999999996 9999999999999
Q ss_pred HHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHH
Q 000200 349 IGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (1871)
Q Consensus 349 i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~ 428 (1871)
++.||+++|+.|.+|...++|+++++|+|+|+.||+++..||++++.. .+++.+++.+..+++|+||++|.+++.||.
T Consensus 81 l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~--~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 81 LALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS--TSLEAQQESIVESLSNKNPSVKSETALFIA 158 (242)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999984 789999999999999999999999999999
Q ss_pred HHHhhCChh-HHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCC
Q 000200 429 FCIETSSKA-AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSG 504 (1871)
Q Consensus 429 r~l~~~~~~-~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~ 504 (1871)
+++....+. .....+..++|.++++++|++++||++|.++|+.+++.+|++.+.+++.+||+.++++|+++++++.
T Consensus 159 ~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a~ 235 (242)
T 2qk2_A 159 RALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKAE 235 (242)
T ss_dssp HHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 999887543 2345668899999999999999999999999999999999999999999999999999999998753
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-30 Score=303.64 Aligned_cols=226 Identities=16% Similarity=0.197 Sum_probs=170.3
Q ss_pred CcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhc----CCCccchHHHHHHHHHHHHHHHHhcCC-
Q 000200 602 IPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML----PGWSEKNVQVQQQVIEVINYLAATATK- 676 (1871)
Q Consensus 602 ~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~----PgwkesNfqV~~~~leil~~la~~~~~- 676 (1871)
+| +.++|.|++||+|++|||++.+.++.........+.+..+.... ..++|+|++|++++++++..++..+..
T Consensus 12 lp--l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 12 LP--LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CC--HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred CC--HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 55 66899999999999999999999987433222212211111111 235799999999999999999976432
Q ss_pred -----CCccchhhhccchhhc-cccch--hhhHHHHHHHHHHHhhch-HhHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 000200 677 -----FPKKCVVLCLLGISER-VADIK--TRAHAMKCLTTFSEAVGP-GFIFERLYKIMKDHKNPKVLSEGILWMVSAVE 747 (1871)
Q Consensus 677 -----fs~~~~~~~l~~lveK-lgD~K--~r~~a~e~L~~~aE~~~~-~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~ 747 (1871)
++..++..+++++++| +||.| +|+.+.++|+.++|...+ ..+++.+..+ .+|||||++++|+.||..+|.
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~-l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPF-FEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGG-GGCSCHHHHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH-HhccCHHHHHHHHHHHHHHHH
Confidence 2345678899999999 79976 789999999999998765 6667777766 589999999999999999999
Q ss_pred HhccCccchHhHHH----HHhhhcCCCccHHHHHHHHHHHHHHHhhhCchh----HhhhhcchHHHHHHHHHHHhcCCCC
Q 000200 748 DFGVSHLKLKDLID----FCKDTGLQSSAAATRNATIKLLGALHKFVGPDI----KGFLADVKPALLSALDAEYEKNPFE 819 (1871)
Q Consensus 748 eFG~~~~~~K~li~----~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l----~~~l~dlkpall~~ie~EF~K~~~~ 819 (1871)
+||+..+++++.++ ++.++ |+++|+.||++|++++++||+|+|+.+ .+||+++||+++++|+++|+|++++
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~-l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~k~~~~ 247 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQL-AGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVGDE 247 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHH-HTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHSCCCC-
T ss_pred HhCCCcCCchhHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHHhcCCC
Confidence 99999999876544 56776 999999999999999999999999876 4688999999999999999999998
Q ss_pred CCCCCccccccc
Q 000200 820 GTVVPKKTVRAS 831 (1871)
Q Consensus 820 ~~p~p~R~~r~~ 831 (1871)
+||+|+|+.+.+
T Consensus 248 ~~~~~~~~~~~~ 259 (278)
T 4ffb_C 248 PSSSKMLFEWEK 259 (278)
T ss_dssp ------CCHHHH
T ss_pred CCCCCcchhhhH
Confidence 888887765543
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-29 Score=289.87 Aligned_cols=227 Identities=15% Similarity=0.186 Sum_probs=210.6
Q ss_pred CCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHH-HHHHcccCCC--CCCccchHHHHhhhc-cchhHhHHHHHH
Q 000200 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNK-ILEEANKRIQ--PAGTGELFGGLRGRL-YDSNKNLVMATL 916 (1871)
Q Consensus 841 ~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~-il~~ankrI~--p~~~geL~~aLk~rl-~DsNk~lv~~al 916 (1871)
..|++|+|||+++||++|...+.++||++|+||+++|.. +++. +++|. ...|++++.+|++.| +|+|.+|+..|+
T Consensus 4 ~~d~~~~~~i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~ 82 (249)
T 2qk1_A 4 MASMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAA 82 (249)
T ss_dssp SCCCCCCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hHhhcChhhhhhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhc-CCccccCcccHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 358999999999999999999999999999999999999 9975 58888 456899999999999 899999999999
Q ss_pred HHHHHHHHhcC-hhHH-hhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc------c-chhhhHHHHHHHhcccCCc
Q 000200 917 ITLGAVASAMG-PAVE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV------H-LDKMVPYVTTALTDAKLGA 987 (1871)
Q Consensus 917 ~ii~~lA~amG-~~~~-k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~------g-l~~~~~~i~~~L~~~~~~p 987 (1871)
++++.||+++| +.|. +|...++|+++++|+|+|+.||+++..||+++++.+ + ++.+++.+..+|.++ ||
T Consensus 83 ~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~ 160 (249)
T 2qk1_A 83 QSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TP 160 (249)
T ss_dssp HHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--Ch
Confidence 99999999999 9999 999999999999999999999999999999999999 7 999999999999976 69
Q ss_pred chHHHHHHHHHHHhccCCCC-----cch-hhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHH
Q 000200 988 EGRKDLFDWLSKQLTGLSGF-----PDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALA 1061 (1871)
Q Consensus 988 ~~r~e~l~wL~~~l~~~~~~-----~~~-~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~ 1061 (1871)
..|.+++.||.+.+...+.. +.+ ..++..+..+|.|.+++||++|.++|+.+++++|.+.|.+++.+|++.++.
T Consensus 161 ~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ 240 (249)
T 2qk1_A 161 QIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRK 240 (249)
T ss_dssp HHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHH
Confidence 99999999999999887653 234 556666888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 000200 1062 LILERIKLN 1070 (1871)
Q Consensus 1062 ~i~~~l~ka 1070 (1871)
+|.++++++
T Consensus 241 ki~~~~~~~ 249 (249)
T 2qk1_A 241 KIEETVKTL 249 (249)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcC
Confidence 999999975
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=273.95 Aligned_cols=218 Identities=20% Similarity=0.248 Sum_probs=198.4
Q ss_pred HHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHH
Q 000200 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYL 670 (1871)
Q Consensus 592 ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~-~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~l 670 (1871)
|++.+++...+++++..+|+|++||.|++|++.|.+.+++ .++.....|++++|+.. ++.|+|++|++++|+++.++
T Consensus 37 ~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~l--r~~d~N~~v~~~~L~~L~~l 114 (266)
T 2of3_A 37 SQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTL--RFFETNPAALIKVLELCKVI 114 (266)
T ss_dssp HHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHH--HTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHH
Confidence 4566788888999999999999999999999999999987 55666778999999974 57899999999999999998
Q ss_pred HHhc----CCCCccchhhhccchhhccccch--hhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHH
Q 000200 671 AATA----TKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVS 744 (1871)
Q Consensus 671 a~~~----~~fs~~~~~~~l~~lveKlgD~K--~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ 744 (1871)
+++. ..++...+..++|.++||+||.| +|+.++++|..+++.++|++|+++++++ ++|||+|++.|||.||.+
T Consensus 115 ~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g-~ksKN~R~R~e~l~~l~~ 193 (266)
T 2of3_A 115 VELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDA-LKSKNARQRSECLLVIEY 193 (266)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHG-GGCSCHHHHHHHHHHHHH
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-HccCCHHHHHHHHHHHHH
Confidence 7654 35788888999999999999998 9999999999999999999999999997 599999999999999999
Q ss_pred HHHHhccCccchHhHH---HHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcC
Q 000200 745 AVEDFGVSHLKLKDLI---DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816 (1871)
Q Consensus 745 ai~eFG~~~~~~K~li---~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~ 816 (1871)
+|+.||.. ..+ .+ +.+-++ ++++|++||++|+++++++|+++|+.++.++++++|+.+++||+.|.+.
T Consensus 194 li~~~G~~--~~~-~l~~~~~ia~l-l~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~L~~~~~~~l~er~~r~ 264 (266)
T 2of3_A 194 YITNAGIS--PLK-SLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEERIKRT 264 (266)
T ss_dssp HHHHHCSG--GGG-GGCHHHHHGGG-GGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCC--ccc-cccchHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCHHHHHHHHHHHhhc
Confidence 99999997 334 56 777777 9999999999999999999999999999999999999999999999864
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.9e-27 Score=267.33 Aligned_cols=228 Identities=18% Similarity=0.257 Sum_probs=210.6
Q ss_pred CCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHH
Q 000200 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLG 920 (1871)
Q Consensus 842 ~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl-~DsNk~lv~~al~ii~ 920 (1871)
.|++|++||+++|+++|++.+.|++|++|++|++.+..+++.. +.+....+++++.+|+++| +|+|.+|...|+++++
T Consensus 4 ~d~~~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~-~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~ 82 (242)
T 2qk2_A 4 MDLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLA 82 (242)
T ss_dssp HHTTSCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHC-SSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHhCCcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccC-CCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999863 4555556799999999999 5999999999999999
Q ss_pred HHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHH
Q 000200 921 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (1871)
Q Consensus 921 ~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~ 1000 (1871)
.+|.++|+.|.+|...++|.++.+|+|+|+.||+++..||++++..++++.+++.+...|.++ ||..|.+++.||.+.
T Consensus 83 ~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 83 LLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNK--NPSVKSETALFIARA 160 (242)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999975 799999999999998
Q ss_pred hccCCC----CcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccC
Q 000200 1001 LTGLSG----FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072 (1871)
Q Consensus 1001 l~~~~~----~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~ 1072 (1871)
+..... .+.+..++..++.+|+|++++||++|.++|+.++.++|.+.+.+.+.+|++..+++|.++++++..
T Consensus 161 l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a~v 236 (242)
T 2qk2_A 161 LTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKAEI 236 (242)
T ss_dssp HTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHCCC
T ss_pred HHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 877642 123456666788999999999999999999999999999999999999999999999999999864
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-22 Score=280.81 Aligned_cols=832 Identities=16% Similarity=0.155 Sum_probs=514.6
Q ss_pred cccccCcCchhHHHHHHHHHHHHhh----------------hcCCCCchh----------------------------hh
Q 000200 16 WEDRLLHKNWKVRNEANIDLAALCD----------------SITDPKDNR----------------------------IR 51 (1871)
Q Consensus 16 l~erl~hK~WKaRl~ayeel~~~f~----------------~~~d~~d~~----------------------------~~ 51 (1871)
|-+.|.|++|+.|..|...+...+. .+.|++... +.
T Consensus 53 Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~ 132 (1230)
T 1u6g_C 53 ILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCK 132 (1230)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHH
Confidence 6777889999999999877765542 122333211 11
Q ss_pred hhhhchhhhcCC-CCHHHHHHHHHHHHHHHHHcChhhhhhhhHHHHHHHHhhhc-CChhhHHHHHHHHHHHHhhcch---
Q 000200 52 ELGPLFKKTVAD-SNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV--- 126 (1871)
Q Consensus 52 ~~~~l~kk~v~D-sN~~aqek~leal~~~l~~a~~~~~~~~~~~~~~lveK~L~-~r~~tk~~a~e~~l~~vE~e~~--- 126 (1871)
...+.+-..+.| .|..+++.+++++..+++..+.....+...+++.+.. +|. ..+..+..|..++-.+++.-..
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~-~L~~~~~~vR~~a~~al~~l~~~~~~~~~ 211 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLP-QLTSPRLAVRKRTIIALGHLVMSCGNIVF 211 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGG-GGGCSSHHHHHHHHHHHHHHTTTC----C
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHhcCHHHH
Confidence 111112234564 8899999999999999887554333344556655543 455 4788999999999999876332
Q ss_pred hhHHHHHHHHhhccC-chhHHHHHHHHHHHHHhhCCCccC-hhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchh
Q 000200 127 DVFLDVMEKAIKNKV-AKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPV 204 (1871)
Q Consensus 127 ~~v~e~ll~~~~~K~-PKvvaaai~~l~~~l~~FG~~vv~-~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~l 204 (1871)
+.++..++..+.+.. +.+...++.++..++..+|....+ +..++..+-..+.+.|..||..+...+..+.+..|.+ +
T Consensus 212 ~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~ 290 (1230)
T 1u6g_C 212 VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE-V 290 (1230)
T ss_dssp TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC-C
T ss_pred HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH-H
Confidence 356777777776543 678888899999999988864333 5678888888899999999999999999999999975 5
Q ss_pred hHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCC
Q 000200 205 KTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTP 284 (1871)
Q Consensus 205 k~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~k 284 (1871)
.+++ ..+-|..++- +.. .|. + ..... . . .++.. +... ..++.|.+
T Consensus 291 ~~~l-~~li~~ll~~-------l~~--d~~-~-~~~~d-----~---~-~~~~~--~~~~-~~~~~~~~----------- 335 (1230)
T 1u6g_C 291 YPHV-STIINICLKY-------LTY--DPN-Y-NYDDE-----D---E-DENAM--DADG-GDDDDQGS----------- 335 (1230)
T ss_dssp HHHH-HHHHHHHTTC-------CCC--C----------------------------------------------------
T ss_pred HHhH-HHHHHHHHHH-------hCC--CCC-C-CCccc-----c---c-ccccc--cccc-cccchhhc-----------
Confidence 5554 5555544322 211 111 1 00000 0 0 00000 0000 00000100
Q ss_pred CCchhhhhhhhccChHHHHHHHHHHHHhhhc-CCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcc-----
Q 000200 285 LEKSGFWEGVKATKWSERKDAVAELTKLAST-KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT----- 358 (1871)
Q Consensus 285 lpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~-pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~----- 358 (1871)
.+.|..-.+..|+.|+.|++.|..+... +.....-|.+++..|...+.|.+-.|...+++++..+.+.++.
T Consensus 336 ---~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 412 (1230)
T 1u6g_C 336 ---DDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWL 412 (1230)
T ss_dssp ------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC----
T ss_pred ---ccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccc
Confidence 0122233567899999999999887752 2111223567778888888899999999999999999987753
Q ss_pred --------------ccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCC-----ChhhhHHHHHHHhhcCCc--
Q 000200 359 --------------HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL-----NLVDVVEDVKTSVKNKVP-- 417 (1871)
Q Consensus 359 --------------~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~-----~l~~~~e~i~~al~~KnP-- 417 (1871)
.+..|...+++.++..++|....||.++..+|..++.. +- .++.+++.+...|+++++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~-~~~~l~~~l~~ll~~l~~~L~d~~~~~ 491 (1230)
T 1u6g_C 413 CDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV-LPGALTQHIPVLVPGIIFSLNDKSSSS 491 (1230)
T ss_dssp --------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-STTTTGGGHHHHHHHHHHHTTCSSSCH
T ss_pred cCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH-chhhhHHHHHHHHHHHHHHHcCCCCcc
Confidence 34667788888888889999999999999999999875 21 256778888899999886
Q ss_pred hhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh------hHHHHHhhcC---
Q 000200 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM------RPLERSIEKL--- 488 (1871)
Q Consensus 418 ~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge------~~l~~~l~~L--- 488 (1871)
.++.+++.++...+....+..+.+++..++|.++.+++|++..||..|..+++.+++.+|+ ..+.+|++.+
T Consensus 492 ~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ 571 (1230)
T 1u6g_C 492 NLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTC 571 (1230)
T ss_dssp HHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHH
Confidence 9999999999999987766656667788999999999999999999999999999999997 2333333222
Q ss_pred ----------CHHHHHHHHHHH----hcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCC
Q 000200 489 ----------DDVRRNKLSEMI----AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPAS 554 (1871)
Q Consensus 489 ----------d~~kk~KI~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 554 (1871)
+..-|.....++ ...|.. . .+- -+...+.= .... .....
T Consensus 572 ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~-~--~~~----------------~~~~l~~L-~~~l--~~e~~----- 624 (1230)
T 1u6g_C 572 TIKRLKAADIDQEVKERAISCMGQIICNLGDN-L--GSD----------------LPNTLQIF-LERL--KNEIT----- 624 (1230)
T ss_dssp HHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG-C--CTH----------------HHHHHHHH-HHHT--TSSSH-----
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhCch-h--hhh----------------HHHHHHHH-HHHh--ccchh-----
Confidence 222222222222 111100 0 000 00000000 0000 00000
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhc
Q 000200 555 KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN 634 (1871)
Q Consensus 555 ~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~ 634 (1871)
..++.. +-+.-..+. . +. +.+.-+..++ +.+.+.+.+.+|..|.++++.+...+.....
T Consensus 625 ------r~~~~~-al~~i~~~~--~------~~-----~~~~~~~~i~-~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~ 683 (1230)
T 1u6g_C 625 ------RLTTVK-ALTLIAGSP--L------KI-----DLRPVLGEGV-PILASFLRKNQRALKLGTLSALDILIKNYSD 683 (1230)
T ss_dssp ------HHHHHH-HHHHHTTCS--S------CC-----CCHHHHHHHH-HHHHHHTTSCCHHHHHHHHHHHHHHHHHCCT
T ss_pred ------HHHHHH-HHHHHHhCc--c------cc-----chHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHhcccc
Confidence 000000 000000000 0 00 1111222222 3567888999999999999999988877432
Q ss_pred cchhHHHHHHHHHhc-CCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHHHHHhh
Q 000200 635 LDQSVEILVRLVCML-PGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713 (1871)
Q Consensus 635 ~~~~~~~lvr~l~~~-PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~ 713 (1871)
.. ..+.+..+|... |.+.++++.+....++++..+....+.........+++.++..+....+...+.+.+..+....
T Consensus 684 ~~-~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l 762 (1230)
T 1u6g_C 684 SL-TAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQAL 762 (1230)
T ss_dssp TC-CHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHH
Confidence 21 234555555433 5678999999999999999988654332222344555666665555443333333333222211
Q ss_pred ----c----hHhHHHHHHH-----------------------h----------------hhhcCChhhHHHHHHHHHHHH
Q 000200 714 ----G----PGFIFERLYK-----------------------I----------------MKDHKNPKVLSEGILWMVSAV 746 (1871)
Q Consensus 714 ----~----~~~V~~~l~~-----------------------~----------------~~~~KnPKv~~e~l~wl~~ai 746 (1871)
. ..-++..++. . +...|+|......-.|...++
T Consensus 763 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 842 (1230)
T 1u6g_C 763 VVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSL 842 (1230)
T ss_dssp HTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHH
T ss_pred HhcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence 0 1111111111 1 111222321111112222445
Q ss_pred HHhccC-ccc-hHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCC
Q 000200 747 EDFGVS-HLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVP 824 (1871)
Q Consensus 747 ~eFG~~-~~~-~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p 824 (1871)
.++|.. .+. ...+++.+.++ |.++|+.||++|...||.+.. | .+..| -|.+++.|+.+ + .
T Consensus 843 ~~~g~~~~~~~~~~l~~~~~~~-l~~~~~~Vr~aAa~aLg~l~~--~-~~~~~----lp~ll~~l~~~---------~-~ 904 (1230)
T 1u6g_C 843 GEVGHHIDLSGQLELKSVILEA-FSSPSEEVKSAASYALGSISV--G-NLPEY----LPFVLQEITSQ---------P-K 904 (1230)
T ss_dssp HHHHHHSCCCSCTHHHHHHHHG-GGCSCHHHHHHHHHHHHHHHH--H-THHHH----HHHHHHHHHSC---------G-G
T ss_pred HHhcccCCCcccccHHHHHHHH-hCCCCHHHHHHHHHHhHHHhc--c-CHHHH----HHHHHHHHhcc---------c-h
Confidence 555542 111 13577888887 999999999999999999873 1 22223 35666666532 0 0
Q ss_pred cccccccc--c-cCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHh
Q 000200 825 KKTVRASE--S-TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901 (1871)
Q Consensus 825 ~R~~r~~~--~-~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk 901 (1871)
.|...-.. + ... .++++.-| ...+|.+.|+..+++.+|.+|..+-+-+..++.-. ..++++.|.
T Consensus 905 ~~~~~l~al~e~i~~--~~~~~~~~---~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~--------~~~l~p~l~ 971 (1230)
T 1u6g_C 905 RQYLLLHSLKEIISS--ASVVGLKP---YVENIWALLLKHCECAEEGTRNVVAECLGKLTLID--------PETLLPRLK 971 (1230)
T ss_dssp GHHHHHHHHHHHHHS--SCSTTTHH---HHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSS--------GGGTHHHHT
T ss_pred hhHHHHHHHHHHHhc--CChhhHHh---hHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccC--------hHHHHHHHH
Confidence 11100000 0 000 00111112 13457778888899999999999999999888521 267999999
Q ss_pred hhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc
Q 000200 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1871)
Q Consensus 902 ~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g 968 (1871)
.++.|+|..+-..++.++..+...+|+.+..|.+.++++++..|.|....||.++..+|..++...+
T Consensus 972 ~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~ 1038 (1230)
T 1u6g_C 972 GYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKP 1038 (1230)
T ss_dssp TTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCG
T ss_pred HHhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCh
Confidence 9999999999888988888888888999999999999999999999999999999999999997765
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-21 Score=272.02 Aligned_cols=610 Identities=11% Similarity=0.119 Sum_probs=387.6
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCC--CCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhh
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIA--PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~--~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~ 366 (1871)
.+.+++.++..-.|..|++.|...+..+.+. +.....++..|-+.+.|.|..|-..|+.|++.++.+++. +|...
T Consensus 10 ~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~~~~~ 86 (1230)
T 1u6g_C 10 NLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVET 86 (1230)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHHH
T ss_pred HHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---HHHHH
Confidence 5788899999999999999999877655443 223558899999999999999999999999999998876 67888
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC----------hhhhHHHHHHHhh-cCCchhHHHHHHHHHHHHhhCC
Q 000200 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----------LVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSS 435 (1871)
Q Consensus 367 ~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~----------l~~~~e~i~~al~-~KnP~vk~etl~~L~r~l~~~~ 435 (1871)
+++.+++.+.|.+..||.++..+|..++...... ..++++.+..+++ +.++.+|..++..|..++...+
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~ 166 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 166 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999998762111 4567777888888 6899999999999999987654
Q ss_pred hhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 000200 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSAR 515 (1871)
Q Consensus 436 ~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~ 515 (1871)
.. +.+.+..+++.++.+++|.++.||++|..+|+.+....|+..+..++ ..+.+.+..... + .
T Consensus 167 ~~-l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l--------~~l~~~L~~~~~------~--~ 229 (1230)
T 1u6g_C 167 GL-LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLI--------EHLLSELSKNDS------M--S 229 (1230)
T ss_dssp SS-CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHH--------HHHHHHHHHTCS------S--C
T ss_pred hH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHH--------HHHHHHhccCCc------h--h
Confidence 32 22345778999999999999999999999999999888865322221 122333322100 0 0
Q ss_pred ccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHH
Q 000200 516 VQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIE 595 (1871)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e 595 (1871)
. + .. .=++-
T Consensus 230 ~---r---------------~~-----------------------------------------------------a~~~l 238 (1230)
T 1u6g_C 230 T---T---------------RT-----------------------------------------------------YIQCI 238 (1230)
T ss_dssp S---C---------------TT-----------------------------------------------------HHHHH
T ss_pred H---H---------------HH-----------------------------------------------------HHHHH
Confidence 0 0 00 00000
Q ss_pred HHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhc-c-chhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHh
Q 000200 596 SRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN-L-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAAT 673 (1871)
Q Consensus 596 ~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~-~-~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~ 673 (1871)
..+...+|..+...+ . .-+.-+.+.+...++ . ....+.+-.+.... .+.--..+...+..+......
T Consensus 239 ~~l~~~~~~~~~~~l-~-------~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~---~~~~~~~l~~li~~ll~~l~~ 307 (1230)
T 1u6g_C 239 AAISRQAGHRIGEYL-E-------KIIPLVVKFCNVDDDELREYCIQAFESFVRRC---PKEVYPHVSTIINICLKYLTY 307 (1230)
T ss_dssp HHHHHHSSGGGTTSC-T-------THHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT---TCCCHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhHHHHHHHH-H-------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHC---hHHHHHhHHHHHHHHHHHhCC
Confidence 000001111000000 0 011111111111100 0 00112222222211 111111222222222111000
Q ss_pred cCCCCcc-chhhh--ccc--hh-------hccc---c--chhhhHHHHHHHHHHHhhch--HhHHHHHHHhh---hhcCC
Q 000200 674 ATKFPKK-CVVLC--LLG--IS-------ERVA---D--IKTRAHAMKCLTTFSEAVGP--GFIFERLYKIM---KDHKN 731 (1871)
Q Consensus 674 ~~~fs~~-~~~~~--l~~--lv-------eKlg---D--~K~r~~a~e~L~~~aE~~~~--~~V~~~l~~~~---~~~Kn 731 (1871)
.+.+... ..... +.. .. +... | -++|..|.++|..++...+. ..+++.+++.+ +...+
T Consensus 308 d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~ 387 (1230)
T 1u6g_C 308 DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE 387 (1230)
T ss_dssp C------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSS
T ss_pred CCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCc
Confidence 0000000 00000 000 00 0000 1 35789999999999985542 23333333333 35678
Q ss_pred hhhHHHHHHHHHHHHHHhccCc--------------------cchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhC
Q 000200 732 PKVLSEGILWMVSAVEDFGVSH--------------------LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG 791 (1871)
Q Consensus 732 PKv~~e~l~wl~~ai~eFG~~~--------------------~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G 791 (1871)
+.|+.+++..+..++...|... --+..+++.+... |.+.++.||.+++.+++.+-...+
T Consensus 388 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~-l~~~~~~vr~~~~~~L~~l~~~~~ 466 (1230)
T 1u6g_C 388 ENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQ-MKEKSVKTRQCCFNMLTELVNVLP 466 (1230)
T ss_dssp SHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHch
Confidence 9999999999999998876410 1235677777776 999999999999999998877655
Q ss_pred chhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCCh--HH
Q 000200 792 PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDW--KV 869 (1871)
Q Consensus 792 ~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~W--K~ 869 (1871)
..+..+++.+= +.+++.+.|++| .+
T Consensus 467 ~~l~~~l~~ll-----------------------------------------------------~~l~~~L~d~~~~~~v 493 (1230)
T 1u6g_C 467 GALTQHIPVLV-----------------------------------------------------PGIIFSLNDKSSSSNL 493 (1230)
T ss_dssp TTTGGGHHHHH-----------------------------------------------------HHHHHHTTCSSSCHHH
T ss_pred hhhHHHHHHHH-----------------------------------------------------HHHHHHHcCCCCcchH
Confidence 44544443333 334444555555 78
Q ss_pred HHHHHHHHHHHHHHcccC-CCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcCh-------hHHhhhhhhhHHH
Q 000200 870 RLESIEAVNKILEEANKR-IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP-------AVEKSSKGVLSDI 941 (1871)
Q Consensus 870 RkEaLe~v~~il~~ankr-I~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~-------~~~k~~k~l~~~i 941 (1871)
|.+++..+..++...++. +.|- +..++..|-..+.|.|..+...|+.+++.++.++|+ .+.+|...++|.+
T Consensus 494 ~~~a~~~l~~~~~~~~~~~~~~~-l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~l 572 (1230)
T 1u6g_C 494 KIDALSCLYVILCNHSPQVFHPH-VQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCT 572 (1230)
T ss_dssp HHHHHHHHHHHHHSSCGGGGHHH-HTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHhH-HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHH
Confidence 999999999988633222 3332 367888888889999999989999999999999998 7889999999999
Q ss_pred HHHh--ccCchhHHHHHHHHHHHHHHhccc--hhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCC--Ccc-hhhhh
Q 000200 942 LKCL--GDNKKHMRECTLTVLDAWLAAVHL--DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FPD-AAHLL 1014 (1871)
Q Consensus 942 l~~l--~D~K~~vR~aa~~alda~~~~~gl--~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~--~~~-~~~~~ 1014 (1871)
+..| .|....+|++++.|+...+..+|- ...++.+...|...-.+...|...+.-+..-...... ... ...++
T Consensus 573 l~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~ 652 (1230)
T 1u6g_C 573 IKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGV 652 (1230)
T ss_dssp HHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHH
Confidence 9999 888999999999999999999873 3334444444432111334577766555543322111 112 23444
Q ss_pred hHHhhhcCCCCHHHHHHHHHHHHHHHHhcCH----HHHHHHhhcc
Q 000200 1015 KPASIAMTDKSSDVRKAAEACIVEILRAGGQ----ETIEKNLKDI 1055 (1871)
Q Consensus 1015 ~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~----~~~~~~~~~L 1055 (1871)
..+...+.|.+..+|.+|..+|..++...|. +.+...+..+
T Consensus 653 ~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~l 697 (1230)
T 1u6g_C 653 PILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDEL 697 (1230)
T ss_dssp HHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 5577789999999999999999999999874 5566665544
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-20 Score=240.37 Aligned_cols=554 Identities=18% Similarity=0.182 Sum_probs=373.9
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCC-CChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~-~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~ 367 (1871)
.+.+.+.+.+|+.|..|...|..+... +.+ ....+|+..|...+ |.+..|...++++++.++..++.. .|...+
T Consensus 14 ~l~~~l~s~~~~~R~~A~~~l~~i~~~--~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~--~~~~~l 88 (588)
T 1b3u_A 14 VLIDELRNEDVQLRLNSIKKLSTIALA--LGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP--EYVHCL 88 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHH--SCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG--GGGGGG
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHH--hCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH--HHHHHH
Confidence 688899999999999999999876531 111 22457888888777 777788889999999888776543 477788
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh----hHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhh
Q 000200 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD----VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1871)
Q Consensus 368 ~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~----~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~ 443 (1871)
++.+..-+.+....||+++.++|..++.. .+-+. +++-+....++.++.+|..++..+.......+... .
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~--~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~----~ 162 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHE--HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV----K 162 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTT--SCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH----H
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHH----H
Confidence 88887777899999999999999999875 34332 33444455578889999999998888776655332 3
Q ss_pred hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCC
Q 000200 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (1871)
Q Consensus 444 k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1871)
..++|.+..+++|.++.||.+|+++|+.+...+|.+...+ .+=+ .+.+.+...
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~---~l~~----~l~~~~~d~-------------------- 215 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKS---EIIP----MFSNLASDE-------------------- 215 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHH---THHH----HHHHHHTCS--------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHH---HHHH----HHHHHhcCC--------------------
Confidence 6788999999999999999999999999999999642211 1000 112222110
Q ss_pred CCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCc
Q 000200 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (1871)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~ 603 (1871)
...++..+....+. - . ..++.++. .+.+-
T Consensus 216 -------~~~vr~~a~~~l~~-----------------------------l---~--------~~~~~~~~----~~~~~ 244 (588)
T 1b3u_A 216 -------QDSVRLLAVEACVN-----------------------------I---A--------QLLPQEDL----EALVM 244 (588)
T ss_dssp -------CHHHHTTHHHHHHH-----------------------------H---H--------HHSCHHHH----HHHTH
T ss_pred -------cHHHHHHHHHHHHH-----------------------------H---H--------HhCCHHHH----HHHHH
Confidence 00011110000000 0 0 00011221 12233
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchh
Q 000200 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (1871)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~ 683 (1871)
+-+...+.+.+|..|..+.+.+.......+.. ...+.++..+.. ..+|.+
T Consensus 245 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~--~l~d~~--------------------------- 294 (588)
T 1b3u_A 245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGPE-ITKTDLVPAFQN--LMKDCE--------------------------- 294 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH-HHHHTHHHHHHH--HHTCSS---------------------------
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc-cchhHHHHHHHH--HhCCCc---------------------------
Confidence 45567778888888888888776555443210 000111111110 122222
Q ss_pred hhccchhhccccchhhhHHHHHHHHHHHhhchH--------hHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccc
Q 000200 684 LCLLGISERVADIKTRAHAMKCLTTFSEAVGPG--------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK 755 (1871)
Q Consensus 684 ~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~--------~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~ 755 (1871)
.-+|..+..+|-.+++..+++ .++..+... .+.++|+|+..++.++..+..-+|-.. -
T Consensus 295 ------------~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~-l~d~~~~vR~~a~~~l~~l~~~~~~~~-~ 360 (588)
T 1b3u_A 295 ------------AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVIMGLSPILGKDN-T 360 (588)
T ss_dssp ------------HHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH-HTCSCHHHHHHHHTTGGGGHHHHCHHH-H
T ss_pred ------------HHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhhHhH-H
Confidence 234555555555555555433 223333333 467889999999888888887777532 2
Q ss_pred hHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccC
Q 000200 756 LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTS 835 (1871)
Q Consensus 756 ~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~ 835 (1871)
...++..+... |.+.++.||.+++..++.+-..+|+.. +.
T Consensus 361 ~~~l~p~l~~~-l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~------------------------------------- 400 (588)
T 1b3u_A 361 IEHLLPLFLAQ-LKDECPEVRLNIISNLDCVNEVIGIRQ--LS------------------------------------- 400 (588)
T ss_dssp HHHTHHHHHHH-HTCSCHHHHHHHHTTCHHHHHHSCHHH--HH-------------------------------------
T ss_pred HHHHHHHHHHH-hCCCchHHHHHHHHHHHHHHHhcCHHH--HH-------------------------------------
Confidence 34566667776 888999999999998888887766421 00
Q ss_pred CCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHH
Q 000200 836 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMAT 915 (1871)
Q Consensus 836 ~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~a 915 (1871)
..+-+.+.+-+.|++|++|..+++.+..+...-.... ....+++.|...|.|.+..|...|
T Consensus 401 ----------------~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~Vr~~a 461 (588)
T 1b3u_A 401 ----------------QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREAA 461 (588)
T ss_dssp ----------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG---CCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred ----------------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHhcCCcHHHHHHH
Confidence 0122334455678899999999999999986432221 114688888889999999999999
Q ss_pred HHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchh----hhHHHHHHHhcccCCcchHH
Q 000200 916 LITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDK----MVPYVTTALTDAKLGAEGRK 991 (1871)
Q Consensus 916 l~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~----~~~~i~~~L~~~~~~p~~r~ 991 (1871)
+.+++.++..+|+.+ +...++|.++..+.|....+|.+++.++..+...+|.+. +++.+...|.++ ++++|.
T Consensus 462 ~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~--~~~Vr~ 537 (588)
T 1b3u_A 462 TSNLKKLVEKFGKEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP--VANVRF 537 (588)
T ss_dssp HHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCS--CHHHHH
T ss_pred HHHHHHHHHHhCchh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCC--CchHHH
Confidence 999999999999875 466789999999999999999999999999999988654 455555555554 588999
Q ss_pred HHHHHHHHHhccCCCCcchhhhhhHHh-hhcCCCCHHHHHHHHHHHHHH
Q 000200 992 DLFDWLSKQLTGLSGFPDAAHLLKPAS-IAMTDKSSDVRKAAEACIVEI 1039 (1871)
Q Consensus 992 e~l~wL~~~l~~~~~~~~~~~~~~p~~-~~L~Dr~~dVRkaA~~~L~~~ 1039 (1871)
.++..|.+....... ......+.|.+ ..++|++.+||.+|..+|..+
T Consensus 538 ~a~~~l~~l~~~~~~-~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 538 NVAKSLQKIGPILDN-STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHGGGSCH-HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhch-hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 999888877655432 11224555644 456999999999999998754
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.1e-18 Score=228.15 Aligned_cols=566 Identities=15% Similarity=0.181 Sum_probs=390.2
Q ss_pred hhhhhhccChHHHHHHHHHHHHhhh-cCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH--hccccccchhh
Q 000200 290 FWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHFSGSSRF 366 (1871)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~g--Lr~~F~~y~~~ 366 (1871)
+...+.+..+..|+.+++.|..+.. .|+.-.....+++..+-+.+.|.+-.|...|++++..+++. .++.+.+|...
T Consensus 220 l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~ 299 (852)
T 4fdd_A 220 LFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPK 299 (852)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4444556778899999999988765 44433334568999999999999999999999999999874 45557889999
Q ss_pred hHHHHHHHh-----------cc-----------CCHHHHHHHHHHHHHHHHh-cCCChhhhHHHHHHHhhcCCchhHHHH
Q 000200 367 LLPVLLEKL-----------KE-----------KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLT 423 (1871)
Q Consensus 367 ~~~~lLekl-----------KE-----------KK~~V~eAl~~aLda~~~~-~~~~l~~~~e~i~~al~~KnP~vk~et 423 (1871)
++|.++..+ .| ..-+||.++..+|+.++.. +..-+..+++-+...+.+.+|.+|..+
T Consensus 300 l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa 379 (852)
T 4fdd_A 300 LIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESG 379 (852)
T ss_dssp HHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 999999998 45 5668999999999999876 111133455666677889999999999
Q ss_pred HHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcC
Q 000200 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (1871)
Q Consensus 424 l~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~ 503 (1871)
+..|....+..+. .+.+.+..++|.++.+++|.++.||.+|+.++|.+...++......+
T Consensus 380 ~~alg~i~~~~~~-~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~------------------- 439 (852)
T 4fdd_A 380 ILVLGAIAEGCMQ-GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY------------------- 439 (852)
T ss_dssp HHHHHHTTTTTHH-HHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT-------------------
T ss_pred HHHHHHHHhcchH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH-------------------
Confidence 9999877765543 33456688999999999999999999999999976655432110000
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q 000200 504 GGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPED 583 (1871)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~ 583 (1871)
T Consensus 440 -------------------------------------------------------------------------------- 439 (852)
T 4fdd_A 440 -------------------------------------------------------------------------------- 439 (852)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHhc-CCCccchHHHHH
Q 000200 584 VEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV-QNLDQSVEILVRLVCML-PGWSEKNVQVQQ 661 (1871)
Q Consensus 584 ~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~-~~~~~~~~~lvr~l~~~-PgwkesNfqV~~ 661 (1871)
.+++- +.++..|.+.+|..|-+|...+...++.. .......+-++..|... ..+...|. .
T Consensus 440 -------~~~ll--------~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~---~ 501 (852)
T 4fdd_A 440 -------LKPLM--------TELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNL---L 501 (852)
T ss_dssp -------HHHHH--------HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHH---H
T ss_pred -------HHHHH--------HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHH---H
Confidence 01111 22445556667777777777777666552 22223333333322211 11233333 3
Q ss_pred HHHHHHHHHHHhcC-CCC-ccchhhhccchhhcc---cc--chhhhHHHHHHHHHHHhhchHhH--HHHHHH----hhh-
Q 000200 662 QVIEVINYLAATAT-KFP-KKCVVLCLLGISERV---AD--IKTRAHAMKCLTTFSEAVGPGFI--FERLYK----IMK- 727 (1871)
Q Consensus 662 ~~leil~~la~~~~-~fs-~~~~~~~l~~lveKl---gD--~K~r~~a~e~L~~~aE~~~~~~V--~~~l~~----~~~- 727 (1871)
..++.+..++...+ .+. ......+++.++++. .| ...+ .+.+++..++...+..|+ +..+++ .+.
T Consensus 502 ~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~ 580 (852)
T 4fdd_A 502 ILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQK 580 (852)
T ss_dssp HHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 45566666654332 222 234456677776432 22 3343 688999999998887664 333333 221
Q ss_pred ---------------hcCChhhHHHHHHHHHHHHHHhccCccch---HhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhh
Q 000200 728 ---------------DHKNPKVLSEGILWMVSAVEDFGVSHLKL---KDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789 (1871)
Q Consensus 728 ---------------~~KnPKv~~e~l~wl~~ai~eFG~~~~~~---K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~ 789 (1871)
......++..++..++.+++.+|-...+. ..++..+..+ +++.++.||.+|..+++.+-++
T Consensus 581 ~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~~vr~~a~~~l~~l~~~ 659 (852)
T 4fdd_A 581 TLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQC-MQDKMPEVRQSSFALLGDLTKA 659 (852)
T ss_dssp HHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHH-TTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHH-hCCCChhHHHHHHHHHHHHHHH
Confidence 11245678888999999999998543322 3678888886 9999999999999999999999
Q ss_pred hCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHH
Q 000200 790 VGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKV 869 (1871)
Q Consensus 790 ~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~ 869 (1871)
+|..+..|+..+-|.+. +.+++.++.+
T Consensus 660 ~~~~~~~~l~~~lp~l~-----------------------------------------------------~~l~~~~~~v 686 (852)
T 4fdd_A 660 CFQHVKPCIADFMPILG-----------------------------------------------------TNLNPEFISV 686 (852)
T ss_dssp CGGGTGGGHHHHHHHHH-----------------------------------------------------HTCCTTSHHH
T ss_pred hhHHHHHHHHHHHHHHH-----------------------------------------------------HHcCccchHH
Confidence 99999988766544443 3334456788
Q ss_pred HHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccch--hHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhcc
Q 000200 870 RLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947 (1871)
Q Consensus 870 RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~Ds--Nk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D 947 (1871)
|+.|...+..|+......++|-. ..++..|-..|.+. ++.+...|..++|+++...+..+.+|...+++.++..|.+
T Consensus 687 ~~~a~~alg~i~~~~~~~~~p~~-~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~ 765 (852)
T 4fdd_A 687 CNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRN 765 (852)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGT-HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHhHHHHH-HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhcc
Confidence 99999999999876555688875 88888888888644 6789999999999999994334568999999999999976
Q ss_pred Cchh-HHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCH
Q 000200 948 NKKH-MRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSS 1026 (1871)
Q Consensus 948 ~K~~-vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~ 1026 (1871)
.... .|+.+..++..++..-+ ..+++ .+.|+-.. ++.-.+..+
T Consensus 766 ~~d~~e~~~a~~~l~~li~~~p-~~~~~------------------~~~~~~~~-----------------~~~~~~~~~ 809 (852)
T 4fdd_A 766 IRDNEEKDSAFRGICTMISVNP-SGVIQ------------------DFIFFCDA-----------------VASWINPKD 809 (852)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCG-GGTGG------------------GHHHHHHH-----------------HHTCSSCCH
T ss_pred ccccHHHHHHHHHHHHHHHhCh-HhHHH------------------HHHHHHHH-----------------HHhcCCCCH
Confidence 4444 68888888888766632 11111 11111111 122234467
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHH
Q 000200 1027 DVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILE 1065 (1871)
Q Consensus 1027 dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~ 1065 (1871)
|.+..=..+|-.+=..+|.+.....+..+.|..+..+.+
T Consensus 810 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 848 (852)
T 4fdd_A 810 DLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAA 848 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHhCCHHHHHHHHH
Confidence 777777888887778888888888888888877766554
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-18 Score=225.92 Aligned_cols=704 Identities=13% Similarity=0.141 Sum_probs=456.1
Q ss_pred cCcCchhHHHHHHHHHHHHhhhcCCCCchhhhhhhhchhhhcCCC-CHHHHHHHHHHHHHHHHHcChh---hhhhhhHHH
Q 000200 20 LLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADS-NAPVQDKALDALIAYLKAADAD---AGRYAKEVC 95 (1871)
Q Consensus 20 l~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~Ds-N~~aqek~leal~~~l~~a~~~---~~~~~~~~~ 95 (1871)
|.+.+=+.|..+.+-+...+...... ..|..+.+.+-..+.+. |..+.+.++.++..+++..+.. .......++
T Consensus 104 l~~~~~~vr~~~~~~l~~i~~~~~p~--~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll 181 (861)
T 2bpt_A 104 LVSIEPRIANAAAQLIAAIADIELPH--GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNIL 181 (861)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHGGG--TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHH
T ss_pred HCCCchHHHHHHHHHHHHHHHhhCcc--cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Confidence 44555666666666666555431110 02333333334456777 9999999999998888764432 123444555
Q ss_pred HHHHHhhhc-C--ChhhHHHHHHHHHHHHhhcc--------hhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCcc
Q 000200 96 DAIAAKCLT-G--RPKTVEKAQAVFMLWVELEA--------VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKII 164 (1871)
Q Consensus 96 ~~lveK~L~-~--r~~tk~~a~e~~l~~vE~e~--------~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~~vv 164 (1871)
+.+ .+++. . .+..+..|.+|+..+++.-. ...+++.+...+.+..+++...++.++..++..++....
T Consensus 182 ~~l-~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 260 (861)
T 2bpt_A 182 IAI-VQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMK 260 (861)
T ss_dssp HHH-HHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCH
T ss_pred HHH-HHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 34554 3 56788889999887765311 134667777788889999999999999999999986433
Q ss_pred C-hh-HHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcc---hhhh
Q 000200 165 P-PK-RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR---KIRA 239 (1871)
Q Consensus 165 ~-~K-~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R---~~Rs 239 (1871)
+ +. .|+..+-..+.+.|..||..+..++..+...... . . ... . +. + ..|.+ +++.
T Consensus 261 ~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~--~-~-~~~-----------~--~~--~-~~~~~~~~~~~~ 320 (861)
T 2bpt_A 261 PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEID--I-A-YEL-----------A--QF--P-QSPLQSYNFALS 320 (861)
T ss_dssp HHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH--H-H-HHH-----------H--HC--T-TCSCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh--h-h-hhh-----------h--hc--c-CCchhhHHHHHH
Confidence 2 34 6677777778899999999999988777665421 0 0 000 0 00 0 01111 1110
Q ss_pred HHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhhcCCCC
Q 000200 240 EQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIA 319 (1871)
Q Consensus 240 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~ 319 (1871)
.-. .-....-..-... .+ |. .+..|..|+.+.+.|..+...-.
T Consensus 321 ~~~--~il~~ll~~l~~~---------~~--d~----------------------~d~~~~~r~~a~~~L~~l~~~~~-- 363 (861)
T 2bpt_A 321 SIK--DVVPNLLNLLTRQ---------NE--DP----------------------EDDDWNVSMSAGACLQLFAQNCG-- 363 (861)
T ss_dssp HHH--HHHHHHHHHTTCC---------CC--C-----------------------CCCCCHHHHHHHHHHHHHHHHHG--
T ss_pred HHH--HHHHHHHHHHHhc---------cc--cc----------------------ccccCcHHHHHHHHHHHHHHHcc--
Confidence 000 0000000000000 00 00 01248999999998887764211
Q ss_pred CCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc-cccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc-
Q 000200 320 PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR-THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG- 397 (1871)
Q Consensus 320 ~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr-~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~- 397 (1871)
..-...++..+...+.|.|-.+-..|+.+++.|+.+.+ ..+.+|...++|.++..++|..+.||.++..+|-.++...
T Consensus 364 ~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 443 (861)
T 2bpt_A 364 NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA 443 (861)
T ss_dssp GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhh
Confidence 22356889999999999999999999999999999987 7788999999999999999999999999998888887651
Q ss_pred -----CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC---hhHHHHhhhhhHHHHHhhhC--CCCHHHHHHHHH
Q 000200 398 -----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS---KAAVLKVHKDYVPICMECLN--DGTPEVRDAAFS 467 (1871)
Q Consensus 398 -----~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~---~~~~~~~~k~~~~~l~k~l~--Ds~~~VR~aA~~ 467 (1871)
...+..+++.+..++++. |.+|..++.-|....+... +..+.+.+..+++.+++.++ |.++.||.++++
T Consensus 444 ~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~ 522 (861)
T 2bpt_A 444 ESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFS 522 (861)
T ss_dssp GGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHH
Confidence 123677888888889876 9999988887777766543 23444566788999999998 555899999999
Q ss_pred HHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCC
Q 000200 468 VLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRP 547 (1871)
Q Consensus 468 ~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 547 (1871)
+++.+....|++ +.+++..+-+.-...+...+.-.
T Consensus 523 al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~-------------------------------------------- 557 (861)
T 2bpt_A 523 ALTTMVEYATDT-VAETSASISTFVMDKLGQTMSVD-------------------------------------------- 557 (861)
T ss_dssp HHHHHHHHCCGG-GHHHHHHHHHHHHHHHHHHTTSC--------------------------------------------
T ss_pred HHHHHHHHcchh-hHHHHHHHHHHHHHHHHHHHhhh--------------------------------------------
Confidence 999999999975 45555543332222222211000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHH
Q 000200 548 VSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQ 627 (1871)
Q Consensus 548 ~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~ 627 (1871)
..-.+.++-+ .....|..+++
T Consensus 558 --------------------------------------~~i~~~~~~~-----------------~~~~~~~~~~~---- 578 (861)
T 2bpt_A 558 --------------------------------------ENQLTLEDAQ-----------------SLQELQSNILT---- 578 (861)
T ss_dssp --------------------------------------GGGCCHHHHH-----------------HHHHHHHHHHH----
T ss_pred --------------------------------------cccCChhhHH-----------------HHHHHHHHHHH----
Confidence 0000100000 00011111111
Q ss_pred HHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHH
Q 000200 628 QVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLT 707 (1871)
Q Consensus 628 ~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~ 707 (1871)
. ...+++.+. +.+. ......+..+..+.+.. . .| .+|+.+..++.
T Consensus 579 ~----------l~~l~~~~~--~~~~----~~~~~l~~~l~~~l~~~-~-----------------~~-~v~~~~~~~l~ 623 (861)
T 2bpt_A 579 V----------LAAVIRKSP--SSVE----PVADMLMGLFFRLLEKK-D-----------------SA-FIEDDVFYAIS 623 (861)
T ss_dssp H----------HHHHHHHCG--GGTG----GGHHHHHHHHHHHHHST-T-----------------GG-GTHHHHHHHHH
T ss_pred H----------HHHHHHHhh--hhhH----HHHHHHHHHHHHHHccC-C-----------------CC-cHHHHHHHHHH
Confidence 1 111222221 1111 11222233222222210 0 01 56778888888
Q ss_pred HHHHhhchHhH--HH----HHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCCcc--HHHHHH
Q 000200 708 TFSEAVGPGFI--FE----RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSA--AATRNA 778 (1871)
Q Consensus 708 ~~aE~~~~~~V--~~----~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~-~K~li~~~k~~~l~~sN--~~VR~a 778 (1871)
.+++..+..|. +. .++..+ +++++.++..++..+..+.+.+|-...+ +..++..+-.. |++.| +.||..
T Consensus 624 ~l~~~~~~~~~~~l~~i~~~l~~~l-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~~vr~~ 701 (861)
T 2bpt_A 624 ALAASLGKGFEKYLETFSPYLLKAL-NQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQM-ISNPNARRELKPA 701 (861)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHHH-HCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHH-HHCTTCCTTHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHH-hCCccccHhhhHH
Confidence 88888776543 33 444443 6799999999999999999998853211 24566666665 77766 999999
Q ss_pred HHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHH
Q 000200 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTL 858 (1871)
Q Consensus 779 Ai~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l 858 (1871)
++.+++.+-..+|+.+.+|+..+-|.++..++. .+ ++ + .++.
T Consensus 702 ~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~----~~--~~-------------------~-------------d~d~ 743 (861)
T 2bpt_A 702 VLSVFGDIASNIGADFIPYLNDIMALCVAAQNT----KP--EN-------------------G-------------TLEA 743 (861)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC----CC--SS-------------------S-------------SHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc----CC--CC-------------------C-------------ChHH
Confidence 999999999999999999998888877765531 00 00 0 0110
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHHcc---cCCCCCCccchHHHHhhhccch----hHhHHHHHHHHHHHHHHhc-ChhH
Q 000200 859 VKSLESPDWKVRLESIEAVNKILEEAN---KRIQPAGTGELFGGLRGRLYDS----NKNLVMATLITLGAVASAM-GPAV 930 (1871)
Q Consensus 859 ~~~l~d~~WK~RkEaLe~v~~il~~an---krI~p~~~geL~~aLk~rl~Ds----Nk~lv~~al~ii~~lA~am-G~~~ 930 (1871)
.+-.+++|..+++.+..|+...+ ..+.|-. .+++..|...+.|. +..+...|+++++.++.++ |+.|
T Consensus 744 ----~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~-~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~ 818 (861)
T 2bpt_A 744 ----LDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYV-GTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSI 818 (861)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGH-HHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTT
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH-HHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchH
Confidence 01136899999999999997543 3355543 77888888888885 8899999999999999999 9999
Q ss_pred Hhhhh-hhhHHHHHHhcc---CchhHHHHHHHHHHHHHHhcc
Q 000200 931 EKSSK-GVLSDILKCLGD---NKKHMRECTLTVLDAWLAAVH 968 (1871)
Q Consensus 931 ~k~~k-~l~~~il~~l~D---~K~~vR~aa~~alda~~~~~g 968 (1871)
.+|.. .++|.+++.|.. ....+++.|.=|+.....+.+
T Consensus 819 ~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~~~ 860 (861)
T 2bpt_A 819 KQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQLS 860 (861)
T ss_dssp GGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999 899999999883 556688888777776655443
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-17 Score=219.93 Aligned_cols=726 Identities=11% Similarity=0.098 Sum_probs=463.4
Q ss_pred cCchhHHHHHHHHHHHHhhhcCCCCchhhhhhhhchhhhcCC-CCHHHHHHHHHHHHHHHHHcCh----------h--hh
Q 000200 22 HKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVAD-SNAPVQDKALDALIAYLKAADA----------D--AG 88 (1871)
Q Consensus 22 hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~D-sN~~aqek~leal~~~l~~a~~----------~--~~ 88 (1871)
+.+=-.|..|-+.|.+.... +.|.|..+ ++.-+..+ .+..+...|...+..++..... . ..
T Consensus 16 s~d~~~r~~Ae~~L~~~~~~----~~~~~~~~--l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~ 89 (861)
T 2bpt_A 16 SPDQNIRLTSETQLKKLSND----NFLQFAGL--SSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVS 89 (861)
T ss_dssp CSSHHHHHHHHHHHHHHHHH----CHHHHHHH--HHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHHHHHHHHHhh----CHHHHHHH--HHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCC
Confidence 33445788888888764321 12344322 22222222 3566666555555444321100 0 00
Q ss_pred -hhhhHHHHHHHHhhhc-CChhhHHHHHHHHHHHHhhcch----hhHHHHHHHHhhcc-CchhHHHHHHHHHHHHHhhCC
Q 000200 89 -RYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK-VAKAVVPAIDVMFQALSEFGA 161 (1871)
Q Consensus 89 -~~~~~~~~~lveK~L~-~r~~tk~~a~e~~l~~vE~e~~----~~v~e~ll~~~~~K-~PKvvaaai~~l~~~l~~FG~ 161 (1871)
.....+-..+++ +|. .-+..+..+..++-..+..+-+ ..++..|...+.+. +|.+.-.++.++..+.++++.
T Consensus 90 ~~~~~~ik~~ll~-~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~ 168 (861)
T 2bpt_A 90 PEAKNQIKTNALT-ALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADP 168 (861)
T ss_dssp HHHHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSST
T ss_pred HHHHHHHHHHHHH-HHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCh
Confidence 011122333444 343 3455666666665555544322 35677777777766 888888888888888888875
Q ss_pred Cc--c--ChhHHHhhchhhhccc--ChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcc
Q 000200 162 KI--I--PPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR 235 (1871)
Q Consensus 162 ~v--v--~~K~ilk~l~~lf~~~--dk~VR~ea~~L~vely~wlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R 235 (1871)
.. + ....|+..+-..+.+. +..||..+.+.+..+..|++. .+ +. .....
T Consensus 169 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~-----~~-~~--~~~~~----------------- 223 (861)
T 2bpt_A 169 QSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN-----NM-ER--EGERN----------------- 223 (861)
T ss_dssp TSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHH-----HH-TS--HHHHH-----------------
T ss_pred hhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH-----Hc-cC--hhHHH-----------------
Confidence 42 1 2455666666677776 788888887776665544431 11 00 00000
Q ss_pred hhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhh-
Q 000200 236 KIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS- 314 (1871)
Q Consensus 236 ~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~- 314 (1871)
.++ ..+.+.+.+..|+.|+.+++.|..+..
T Consensus 224 --------------------------------------------~ll-----~~l~~~~~~~~~~~r~~a~~~l~~l~~~ 254 (861)
T 2bpt_A 224 --------------------------------------------YLM-----QVVCEATQAEDIEVQAAAFGCLCKIMSK 254 (861)
T ss_dssp --------------------------------------------HHH-----HHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------HHH-----HHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 000 012233456679999999999988764
Q ss_pred cCCCCCCChH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc----------------cc-cccchhhhHHHHHHHhc
Q 000200 315 TKRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR----------------TH-FSGSSRFLLPVLLEKLK 376 (1871)
Q Consensus 315 ~pKi~~~dy~-eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr----------------~~-F~~y~~~~~~~lLeklK 376 (1871)
.+..-...+. +++..+-..+.|.+-.|...|++++..+++... ++ +.+|...++|.+++.++
T Consensus 255 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~ 334 (861)
T 2bpt_A 255 YYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLT 334 (861)
T ss_dssp HGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3332222234 678888888889999999999999999998752 11 34567889999999998
Q ss_pred c-------CCHHHHHHHHHHHHHHHHh-cCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHH
Q 000200 377 E-------KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 448 (1871)
Q Consensus 377 E-------KK~~V~eAl~~aLda~~~~-~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~ 448 (1871)
+ -..++|.++..+|+.++.. +...+..+++.+...+.+.++.+|..++..|....+...+..+.+.+..++|
T Consensus 335 ~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~ 414 (861)
T 2bpt_A 335 RQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALP 414 (861)
T ss_dssp CCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHH
T ss_pred hcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4 3468999999999999875 1112455666777778899999999998888877655543445566788999
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH-HHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCC
Q 000200 449 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVE 527 (1871)
Q Consensus 449 ~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l-~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1871)
.++..+.|.++.||.+++.++|.+...+|.... .++
T Consensus 415 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~------------------------------------------- 451 (861)
T 2bpt_A 415 SILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH------------------------------------------- 451 (861)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-------------------------------------------
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-------------------------------------------
Confidence 999999999999999999999998887764210 000
Q ss_pred CcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHH
Q 000200 528 ASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV 607 (1871)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~ 607 (1871)
.+++- +.++
T Consensus 452 ---------------------------------------------------------------~~~~l--------~~l~ 460 (861)
T 2bpt_A 452 ---------------------------------------------------------------LPGVV--------QACL 460 (861)
T ss_dssp ---------------------------------------------------------------HHHHH--------HHHH
T ss_pred ---------------------------------------------------------------HHHHH--------HHHH
Confidence 00110 1122
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHhhh-----ccchhHH----HHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCC
Q 000200 608 GQLKSAVWKERLEAISSLRQQVEAVQ-----NLDQSVE----ILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFP 678 (1871)
Q Consensus 608 ~~L~s~~WK~RL~a~e~l~~~v~~~~-----~~~~~~~----~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs 678 (1871)
..|.+. +..|..+...+...++... ......+ .|++.+.. .|.+..|....++.+..++...+.-.
T Consensus 461 ~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~----~d~~~~vr~~a~~al~~l~~~~~~~~ 535 (861)
T 2bpt_A 461 IGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANR----IDNEFNARASAFSALTTMVEYATDTV 535 (861)
T ss_dssp HHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTC----SCCGGGHHHHHHHHHHHHHHHCCGGG
T ss_pred HHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhC----cCcchHHHHHHHHHHHHHHHHcchhh
Confidence 233332 4555555555554444422 1112222 33333321 24556788888999998888655433
Q ss_pred ccchhhhccchhhcccc-----------------chhhhHHHHHHHHHHHhhchHh------HHHHHHHhhhhcCCh-hh
Q 000200 679 KKCVVLCLLGISERVAD-----------------IKTRAHAMKCLTTFSEAVGPGF------IFERLYKIMKDHKNP-KV 734 (1871)
Q Consensus 679 ~~~~~~~l~~lveKlgD-----------------~K~r~~a~e~L~~~aE~~~~~~------V~~~l~~~~~~~KnP-Kv 734 (1871)
...+..+++.+++.+.+ ..++..+.++|..+++..+..+ ++..++.. .+..++ .+
T Consensus 536 ~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~v 614 (861)
T 2bpt_A 536 AETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRL-LEKKDSAFI 614 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHH-HHSTTGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HccCCCCcH
Confidence 33444566666666653 2357788899999999887643 33344444 356667 89
Q ss_pred HHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHH
Q 000200 735 LSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEY 813 (1871)
Q Consensus 735 ~~e~l~wl~~ai~eFG~~~~~-~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF 813 (1871)
+.+++.+++.+...+|....+ +..+++.+... |.+.++.||..|+.+++.+-+.+|+.+.+|+.++=|.++..++.+
T Consensus 615 ~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~-l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~- 692 (861)
T 2bpt_A 615 EDDVFYAISALAASLGKGFEKYLETFSPYLLKA-LNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNP- 692 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH-HHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCc-
Confidence 999999999999988865332 46788888886 888999999999999999999999988888866666555444310
Q ss_pred hcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCc
Q 000200 814 EKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT 893 (1871)
Q Consensus 814 ~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~ 893 (1871)
+.++.+|..++..+..|+...+..+.|-.
T Consensus 693 --------------------------------------------------~~~~~vr~~~~~~l~~l~~~~~~~~~~~l- 721 (861)
T 2bpt_A 693 --------------------------------------------------NARRELKPAVLSVFGDIASNIGADFIPYL- 721 (861)
T ss_dssp --------------------------------------------------TCCTTHHHHHHHHHHHHHHHHGGGGHHHH-
T ss_pred --------------------------------------------------cccHhhhHHHHHHHHHHHHHhhhhHHHHH-
Confidence 01245677888888888865444444432
Q ss_pred cchHHHHhhhcc-----------chhHhHHHHHHHHHHHHHHhcC---hhHHhhhhhhhHHHHHHhccC----chhHHHH
Q 000200 894 GELFGGLRGRLY-----------DSNKNLVMATLITLGAVASAMG---PAVEKSSKGVLSDILKCLGDN----KKHMREC 955 (1871)
Q Consensus 894 geL~~aLk~rl~-----------DsNk~lv~~al~ii~~lA~amG---~~~~k~~k~l~~~il~~l~D~----K~~vR~a 955 (1871)
..+++.|...+. |...++...++++++.++.++| ..|..|...+++.+...+.|. ...||.+
T Consensus 722 ~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~ 801 (861)
T 2bpt_A 722 NDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRA 801 (861)
T ss_dssp HHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 456666655554 2335677899999999999999 568899999999888888874 7899999
Q ss_pred HHHHHHHHHHhc-cch-------hhhHHHHHHHhcccCCcchHHHHHHHHHHHh
Q 000200 956 TLTVLDAWLAAV-HLD-------KMVPYVTTALTDAKLGAEGRKDLFDWLSKQL 1001 (1871)
Q Consensus 956 a~~alda~~~~~-gl~-------~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l 1001 (1871)
|..++..++... |-+ .+++.+...|........--.+...|..+.+
T Consensus 802 a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~ 855 (861)
T 2bpt_A 802 AVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQ 855 (861)
T ss_dssp HHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 999999999988 522 3344444444421111112345666655544
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-16 Score=213.46 Aligned_cols=619 Identities=14% Similarity=0.112 Sum_probs=413.9
Q ss_pred hhhhhhhcc--ChHHHHHHHHHHHHhhhc--CCCCCCChHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHhcccccc
Q 000200 289 GFWEGVKAT--KWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITDV--NIAVAVEAIQAIGNLARGLRTHFSG 362 (1871)
Q Consensus 289 ~f~~~l~s~--KWkeRkEaLe~l~~l~~~--pKi~~~dy~eL~~~Lkk~l~Ds--Nv~vv~~A~~~i~~lA~gLr~~F~~ 362 (1871)
.+...+.+. .+..|..+|+.|..+... +.........++..|...+.|. |..+-..|++|++.++..++.++..
T Consensus 132 ~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~ 211 (876)
T 1qgr_A 132 QLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK 211 (876)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTS
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566667777 888999999998887653 1111233567888899999865 7889999999999999888776654
Q ss_pred ch--hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC----hh-hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC
Q 000200 363 SS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----LV-DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (1871)
Q Consensus 363 y~--~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~----l~-~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~ 435 (1871)
+. ..+++.+.+.+.+....||.++.++|..++....-. +. .+++-+...+++..+.+|..++.|+..+.+...
T Consensus 212 ~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~ 291 (876)
T 1qgr_A 212 ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM 291 (876)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 32 247888888888889999999999999998752111 33 667777777889999999999999887765310
Q ss_pred --------------------hhHHHHhhhhhHHHHHhhhC-------CCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcC
Q 000200 436 --------------------KAAVLKVHKDYVPICMECLN-------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 488 (1871)
Q Consensus 436 --------------------~~~~~~~~k~~~~~l~k~l~-------Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~L 488 (1871)
.......++.++|.++..+. |.+..+|.+|..+|+.+...+|+..+..++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~-- 369 (876)
T 1qgr_A 292 DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLP-- 369 (876)
T ss_dssp HHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHH--
T ss_pred hHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHH--
Confidence 01111234677888888873 4567899999999999999999644332222
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000200 489 DDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDG 568 (1871)
Q Consensus 489 d~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~ 568 (1871)
.+.+.+... . ..++..+....+.-
T Consensus 370 ------~l~~~l~~~---------~------------------~~~r~~a~~~l~~i----------------------- 393 (876)
T 1qgr_A 370 ------FIKEHIKNP---------D------------------WRYRDAAVMAFGCI----------------------- 393 (876)
T ss_dssp ------HHHHHTTCS---------S------------------HHHHHHHHHHHHHT-----------------------
T ss_pred ------HHHHHccCC---------C------------------hHHHHHHHHHHHHH-----------------------
Confidence 222222110 0 00111110000000
Q ss_pred CCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhc---cchhHHHHHHH
Q 000200 569 SGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN---LDQSVEILVRL 645 (1871)
Q Consensus 569 ~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~---~~~~~~~lvr~ 645 (1871)
. ....++.+...+..++ +.++..|.+.+|..|..|...+....+.... .....+-++..
T Consensus 394 ---------~--------~~~~~~~~~~~~~~~l-~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~ 455 (876)
T 1qgr_A 394 ---------L--------EGPEPSQLKPLVIQAM-PTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQC 455 (876)
T ss_dssp ---------S--------SSSCHHHHHHHHHHHH-HHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHH
T ss_pred ---------H--------cCCCHHHHHHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHH
Confidence 0 0012233333333333 3567888999999999999988877766332 12233334443
Q ss_pred HHhcCCCccchHHHHHHHHHHHHHHHHhcC--------------CCCccchhhhccchhhccccc-----hhhhHHHHHH
Q 000200 646 VCMLPGWSEKNVQVQQQVIEVINYLAATAT--------------KFPKKCVVLCLLGISERVADI-----KTRAHAMKCL 706 (1871)
Q Consensus 646 l~~~PgwkesNfqV~~~~leil~~la~~~~--------------~fs~~~~~~~l~~lveKlgD~-----K~r~~a~e~L 706 (1871)
+.. +..| +..|.......+..++..+. ..-...+..+++.++..+.+. .+|..+.++|
T Consensus 456 l~~--~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l 532 (876)
T 1qgr_A 456 LIE--GLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESL 532 (876)
T ss_dssp HHH--HTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHH
T ss_pred HHH--HHcC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHH
Confidence 332 2344 36677788888888776542 112234556677766666543 5778899999
Q ss_pred HHHHHhhchHh------HHHHHHHhhhh----------cCC----hhhHHHHHHHHHHHHHHhc-cCcc-chHhHHHHHh
Q 000200 707 TTFSEAVGPGF------IFERLYKIMKD----------HKN----PKVLSEGILWMVSAVEDFG-VSHL-KLKDLIDFCK 764 (1871)
Q Consensus 707 ~~~aE~~~~~~------V~~~l~~~~~~----------~Kn----PKv~~e~l~wl~~ai~eFG-~~~~-~~K~li~~~k 764 (1871)
..++...+.++ ++..++..+.. ... |.++.-++.++..++..+| -... -+..+++.+-
T Consensus 533 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~ 612 (876)
T 1qgr_A 533 MEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLL 612 (876)
T ss_dssp HHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHH
T ss_pred HHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHH
Confidence 99998776432 22222222211 111 6677788888888888777 2211 1345666666
Q ss_pred hhcCCCcc--HHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCC
Q 000200 765 DTGLQSSA--AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 842 (1871)
Q Consensus 765 ~~~l~~sN--~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~ 842 (1871)
.. |.+.+ +.||..++.+++.+-..+|..+.+|++.+-|.+...
T Consensus 613 ~~-l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~---------------------------------- 657 (876)
T 1qgr_A 613 RM-FQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIG---------------------------------- 657 (876)
T ss_dssp HH-C-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH----------------------------------
T ss_pred HH-HHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----------------------------------
Confidence 66 77765 589999999999999989888777765544433333
Q ss_pred CCCCccccccCCcHHHHhhcCCC-ChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccc--hhHhHHHHHHHHH
Q 000200 843 DGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLVMATLITL 919 (1871)
Q Consensus 843 d~lprvDIs~kit~~l~~~l~d~-~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~D--sNk~lv~~al~ii 919 (1871)
+.+. +|.+|..|++.+..|+......+.|.. .+++..|...|.+ .+..+...++.++
T Consensus 658 -------------------l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l 717 (876)
T 1qgr_A 658 -------------------LKNYAEYQVCLAAVGLVGDLCRALQSNIIPFC-DEVMQLLLENLGNENVHRSVKPQILSVF 717 (876)
T ss_dssp -------------------HHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHTCTTSCGGGHHHHHHHH
T ss_pred -------------------HcCcchHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHhCCccccHHhhHHHHHHH
Confidence 3333 688999999999999976555666654 7888889888865 5678999999999
Q ss_pred HHHHHhcChhHHhhhhhhhHHHHHHhccCc-----------hhHHHHHHHHHHHHHHhcc------------chhhhHHH
Q 000200 920 GAVASAMGPAVEKSSKGVLSDILKCLGDNK-----------KHMRECTLTVLDAWLAAVH------------LDKMVPYV 976 (1871)
Q Consensus 920 ~~lA~amG~~~~k~~k~l~~~il~~l~D~K-----------~~vR~aa~~alda~~~~~g------------l~~~~~~i 976 (1871)
+.|+..+|+.|.+|...++|.++..+.++. ..+|.++..++..++...| +..+++.+
T Consensus 718 ~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i 797 (876)
T 1qgr_A 718 GDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI 797 (876)
T ss_dssp HHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH
Confidence 999999999999999999999999998763 4899999999999888764 23445555
Q ss_pred HHHHh----cccCCcchHHHHHHHHHHHhccCCC---Ccc-hhhhhhHHhh-hcCCCCHHHHHHHHHHHHHHHH
Q 000200 977 TTALT----DAKLGAEGRKDLFDWLSKQLTGLSG---FPD-AAHLLKPASI-AMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 977 ~~~L~----~~~~~p~~r~e~l~wL~~~l~~~~~---~~~-~~~~~~p~~~-~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
...+. ++..+...|...+.-|.+-...... .+- ...++.|++. ++.|.+++||.+|.-+++.+.+
T Consensus 798 ~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 798 LSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHH
Confidence 55553 2211456777665555443333322 111 2356778888 9999999999999999998765
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-18 Score=217.00 Aligned_cols=552 Identities=13% Similarity=0.130 Sum_probs=363.8
Q ss_pred hHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhh
Q 000200 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (1871)
Q Consensus 605 ~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~ 684 (1871)
.++..|.|.+|..|..|+..+.......++. ...+.++.+|.. ..|.+-.|.....+.+..+....+. ......
T Consensus 14 ~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~-~~~~~l~~~L~~---~~d~~~~vr~~~~~~L~~~~~~~~~--~~~~~~ 87 (588)
T 1b3u_A 14 VLIDELRNEDVQLRLNSIKKLSTIALALGVE-RTRSELLPFLTD---TIYDEDEVLLALAEQLGTFTTLVGG--PEYVHC 87 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHHSCHH-HHHHTHHHHHHH---TCCCCHHHHHHHHHHHTTCSGGGTS--GGGGGG
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHHhCHH-HHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHHhccCc--HHHHHH
Confidence 5678999999999999999998765543221 122334555542 1266778888877777654432211 122334
Q ss_pred hccchhhccc--cchhhhHHHHHHHHHHHhhchHhHHHHHHHh---hhhcCChhhHHHHHHHHHHHHHHhccCccchHhH
Q 000200 685 CLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGFIFERLYKI---MKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDL 759 (1871)
Q Consensus 685 ~l~~lveKlg--D~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~---~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~l 759 (1871)
+++.+..-+. +.-+|..+.++|..+++..++..+...+++. +..+.++.++..++..+..+...+|-. ..+.+
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~--~~~~l 165 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--VKAEL 165 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH--HHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH--HHHHH
Confidence 4444433223 3568999999999999998887665544443 346778999999999888887766632 35678
Q ss_pred HHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCC
Q 000200 760 IDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSS 839 (1871)
Q Consensus 760 i~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~ 839 (1871)
+.++... +.+.|+.||.+|...++.+..++|+.. +..+
T Consensus 166 ~~~l~~l-~~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~--------------------------------------- 203 (588)
T 1b3u_A 166 RQYFRNL-CSDDTPMVRRAAASKLGEFAKVLELDN--VKSE--------------------------------------- 203 (588)
T ss_dssp HHHHHHH-HTCSCHHHHHHHHHHHHHHHHTSCHHH--HHHT---------------------------------------
T ss_pred HHHHHHH-hCCCCHHHHHHHHHHHHHHHHHhcHHh--HHHH---------------------------------------
Confidence 8888887 899999999999999999988877521 0111
Q ss_pred CCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHH
Q 000200 840 GGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITL 919 (1871)
Q Consensus 840 ~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii 919 (1871)
+-+.+..-+.|.+|.+|..|++.+..+.....+. .....++..|...+.|.+-.+-..|+.++
T Consensus 204 --------------l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l 266 (588)
T 1b3u_A 204 --------------IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKF 266 (588)
T ss_dssp --------------HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTH
T ss_pred --------------HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 2234555667889999999999999988642110 01234777788888999999999999999
Q ss_pred HHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccc--------hhhhHHHHHHHhcccCCcchHH
Q 000200 920 GAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKMVPYVTTALTDAKLGAEGRK 991 (1871)
Q Consensus 920 ~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl--------~~~~~~i~~~L~~~~~~p~~r~ 991 (1871)
+.++..+|+.. +...++|.++..+.|..+.||.++..+|..+...+|- ..++|.+...+.++ ++..|.
T Consensus 267 ~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~--~~~vR~ 342 (588)
T 1b3u_A 267 TELQKAVGPEI--TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA--NQHVKS 342 (588)
T ss_dssp HHHHHHHCHHH--HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS--CHHHHH
T ss_pred HHHHHHhCccc--chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC--CHHHHH
Confidence 99999998753 5567899999999999999999999999999988763 33445555555543 466666
Q ss_pred HHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhcc
Q 000200 992 DLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNG 1071 (1871)
Q Consensus 992 e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~ 1071 (1871)
.+..+|.+-............++..+..+|.|.+.+||.+|...|+.++..+|.+.+.+ .+.+
T Consensus 343 ~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~-----------~~lp------ 405 (588)
T 1b3u_A 343 ALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQ-----------SLLP------ 405 (588)
T ss_dssp HHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHH-----------HHHH------
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHH-----------HHHH------
Confidence 66555432221111100012223335556677777777777777777766665432111 1111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChHHHHhhhhcccc
Q 000200 1072 ASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFK 1151 (1871)
Q Consensus 1072 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~~~~~~kw~ 1151 (1871)
T Consensus 406 -------------------------------------------------------------------------------- 405 (588)
T 1b3u_A 406 -------------------------------------------------------------------------------- 405 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhh--HhHHHHHHHHHHhccccchHHHH
Q 000200 1152 FEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDII--EVLDILLRWFVLQFCKSNTTCLL 1229 (1871)
Q Consensus 1152 f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i--~~lDlllkw~tlr~~dtN~~vl~ 1229 (1871)
.+...+-+.+|+-+..+++.|.......+.+.. ..+.++++| +.|++..|-.
T Consensus 406 ----------------------~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~----l~d~~~~Vr~ 459 (588)
T 1b3u_A 406 ----------------------AIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAW----LVDHVYAIRE 459 (588)
T ss_dssp ----------------------HHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHG----GGCSSHHHHH
T ss_pred ----------------------HHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH----hcCCcHHHHH
Confidence 111122233444444333333322211111110 113344444 4788888877
Q ss_pred HHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhhccCc----cchHHHHHhhhccCCh
Q 000200 1230 KVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA----TKTLPYILEGLRSKNN 1305 (1871)
Q Consensus 1230 k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~----skvf~~l~~glksKN~ 1305 (1871)
..+..+..+...+.... -...++|.|+.-..|+...+|...=..+..++..++. ..++|.|+..++..++
T Consensus 460 ~a~~~l~~l~~~~~~~~------~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~ 533 (588)
T 1b3u_A 460 AATSNLKKLVEKFGKEW------AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA 533 (588)
T ss_dssp HHHHHHHHHHHHHCHHH------HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCH
T ss_pred HHHHHHHHHHHHhCchh------HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCc
Confidence 78888877777654431 1356888888766777778888766666666554443 4688888888888899
Q ss_pred hhHhHHHHHHHHHHHhhcCcccCccchHHHHHHHhccCChhHHHHHHHHHHH
Q 000200 1306 RTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLAT 1357 (1871)
Q Consensus 1306 r~R~Ecl~el~~li~~~G~~v~~~~Kal~~ia~~i~drD~~VR~AALn~l~~ 1357 (1871)
..|..++..++.+...+|-.. .....++.+.++..|+|..||.+|..++.+
T Consensus 534 ~Vr~~a~~~l~~l~~~~~~~~-~~~~~~p~l~~l~~d~d~~vr~~a~~al~~ 584 (588)
T 1b3u_A 534 NVRFNVAKSLQKIGPILDNST-LQSEVKPILEKLTQDQDVDVKYFAQEALTV 584 (588)
T ss_dssp HHHHHHHHHHHHHGGGSCHHH-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhchhh-hHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence 999999999999888777542 112345778788899999999999988874
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.4e-16 Score=209.37 Aligned_cols=595 Identities=11% Similarity=0.114 Sum_probs=398.4
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhh-cCCCC-----CCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccc
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLAS-TKRIA-----PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG 362 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~-----~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~ 362 (1871)
.+.+.+.+.+|..|..++..|..++. .+... ......++..|.+.+.|.+..|-..|++|+..+.......+..
T Consensus 132 ~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~ 211 (852)
T 4fdd_A 132 KLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML 211 (852)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH
Confidence 45556666777888888888877664 23221 1236778888888889999999999999999998887777888
Q ss_pred chhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcC----CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC-hh
Q 000200 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC----LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS-KA 437 (1871)
Q Consensus 363 y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~----~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~-~~ 437 (1871)
+...+++.++..+.|....||.++..||..++.... ..+..+++.+...++++.+.||.+++.|+..+.+... +.
T Consensus 212 ~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~ 291 (852)
T 4fdd_A 212 HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKD 291 (852)
T ss_dssp SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHH
Confidence 888999999999999999999999999999987511 1255677777888899999999999999987654321 12
Q ss_pred HHHHhhhhhHHHHHhhh-----------CC-----------CCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHH
Q 000200 438 AVLKVHKDYVPICMECL-----------ND-----------GTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNK 495 (1871)
Q Consensus 438 ~~~~~~k~~~~~l~k~l-----------~D-----------s~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~K 495 (1871)
.+.+.+..++|.++..+ +| .+-.||.+|..+|+.+...+|+..+..++
T Consensus 292 ~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~---------- 361 (852)
T 4fdd_A 292 VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHIL---------- 361 (852)
T ss_dssp HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHH----------
Confidence 22344567888898888 33 33446777777777776666643221110
Q ss_pred HHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 000200 496 LSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETS 575 (1871)
Q Consensus 496 I~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s 575 (1871)
T Consensus 362 -------------------------------------------------------------------------------- 361 (852)
T 4fdd_A 362 -------------------------------------------------------------------------------- 361 (852)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHhcCCCcc
Q 000200 576 KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NLDQSVEILVRLVCMLPGWSE 654 (1871)
Q Consensus 576 ~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~-~~~~~~~~lvr~l~~~Pgwke 654 (1871)
+-+...+.+.+|+.|.+|+..+....+... ......+-++..+. +..+|
T Consensus 362 ----------------------------~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~--~~l~d 411 (852)
T 4fdd_A 362 ----------------------------PLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI--QCLSD 411 (852)
T ss_dssp ----------------------------HHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHH--HHTTC
T ss_pred ----------------------------HHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--HHcCC
Confidence 112234456689999998888876665422 22223344555554 34689
Q ss_pred chHHHHHHHHHHHHHHHHhcC-CCCccchhhhccchhhcccc--chhhhHHHHHHHHHHHhhchH------hHHHHHHHh
Q 000200 655 KNVQVQQQVIEVINYLAATAT-KFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG------FIFERLYKI 725 (1871)
Q Consensus 655 sNfqV~~~~leil~~la~~~~-~fs~~~~~~~l~~lveKlgD--~K~r~~a~e~L~~~aE~~~~~------~V~~~l~~~ 725 (1871)
.|..|.......+..+++..+ .........+++.++..+.| .++|..+..+|..+++..+.. -++..++..
T Consensus 412 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~ 491 (852)
T 4fdd_A 412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFA 491 (852)
T ss_dssp SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHH
Confidence 999999999999988876432 23344556677888877765 578999999999999977653 234444444
Q ss_pred hhhcCChhhHHHHHHHHHHHHHHhccCccc---hHhHHHHHh---hhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhh
Q 000200 726 MKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCK---DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA 799 (1871)
Q Consensus 726 ~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~---~K~li~~~k---~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~ 799 (1871)
+ +.-+.+...-++..+..+.+..|-.... +..++..+. .. +.+..+.+| .++..++.+...+|..+.+|+.
T Consensus 492 l-~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~-l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~ 568 (852)
T 4fdd_A 492 F-SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM-LKDEDKDLF-PLLECLSSVATALQSGFLPYCE 568 (852)
T ss_dssp H-HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHH-SCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHH
T ss_pred H-HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHh-cccccHHHH-HHHHHHHHHHHHHhHhHHHHHH
Confidence 3 3233344333333344444433432211 123333332 23 567778887 7899999999999999999998
Q ss_pred cchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHH
Q 000200 800 DVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNK 879 (1871)
Q Consensus 800 dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~ 879 (1871)
.+=+.++..|..-+.+.... ... .+ ..+..+-..|.-+++.+..
T Consensus 569 ~i~~~~~~~l~~~l~~~~~~-----------~~~--------~~-----------------~~~~~d~~~~~~~l~~l~~ 612 (852)
T 4fdd_A 569 PVYQRCVNLVQKTLAQAMLN-----------NAQ--------PD-----------------QYEAPDKDFMIVALDLLSG 612 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------HHC--------TT-----------------TSCCCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-----------hcC--------Cc-----------------ccCCCcchHHHHHHHHHHH
Confidence 88887777777665431000 000 00 0001122358888999999
Q ss_pred HHHHcccCCCCCC-ccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHH
Q 000200 880 ILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLT 958 (1871)
Q Consensus 880 il~~ankrI~p~~-~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~ 958 (1871)
|+..-...+.|-. -..++..|-..+.|.+..+...|..+++.++.++|..|.+|...++|.++..|.+....+|..|..
T Consensus 613 l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~ 692 (852)
T 4fdd_A 613 LAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATW 692 (852)
T ss_dssp HHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHH
T ss_pred HHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHH
Confidence 8876544554421 046888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc--chhhhHHHHHH----HhcccCCcchHHHHHHHHHHHhccCCC--CcchhhhhhHHhhhcCC-CCHHHH
Q 000200 959 VLDAWLAAVH--LDKMVPYVTTA----LTDAKLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLLKPASIAMTD-KSSDVR 1029 (1871)
Q Consensus 959 alda~~~~~g--l~~~~~~i~~~----L~~~~~~p~~r~e~l~wL~~~l~~~~~--~~~~~~~~~p~~~~L~D-r~~dVR 1029 (1871)
++..++..+| +.++++.+... |.++..+..++..+..=|.+-....+. .+.+..++.+.+..|.+ ++.+.|
T Consensus 693 alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~ 772 (852)
T 4fdd_A 693 AIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEK 772 (852)
T ss_dssp HHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHH
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHH
Confidence 9999998886 34444444333 334332223444333333322222211 23355566666666643 455567
Q ss_pred HHHHHHHHHHHHh
Q 000200 1030 KAAEACIVEILRA 1042 (1871)
Q Consensus 1030 kaA~~~L~~~m~~ 1042 (1871)
..|...|..++..
T Consensus 773 ~~a~~~l~~li~~ 785 (852)
T 4fdd_A 773 DSAFRGICTMISV 785 (852)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777766666654
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-16 Score=210.14 Aligned_cols=651 Identities=14% Similarity=0.121 Sum_probs=429.8
Q ss_pred hhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHhc-cccccchhh
Q 000200 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDV--NIAVAVEAIQAIGNLARGLR-THFSGSSRF 366 (1871)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~Ds--Nv~vv~~A~~~i~~lA~gLr-~~F~~y~~~ 366 (1871)
+.+.+.+...+. ..+.+.+..+...- ...+.+.+++..|...+.|. +..+...|+++++.|++.++ ..|.+|...
T Consensus 95 ll~~l~~~~~~~-~~~~~~l~~i~~~~-~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 172 (876)
T 1qgr_A 95 VLHTLGTETYRP-SSASQCVAGIACAE-IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNE 172 (876)
T ss_dssp HHHHTTTCCSSS-CHHHHHHHHHHHHH-GGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHH
T ss_pred HHHHhCCCcHHH-HHHHHHHHHHHHhh-CcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHH
Confidence 444454444444 44555555544320 01245778999999999877 89999999999999999874 458899999
Q ss_pred hHHHHHHHhccC--CHHHHHHHHHHHHHHHHhcCCChh------hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhH
Q 000200 367 LLPVLLEKLKEK--KPTVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 438 (1871)
Q Consensus 367 ~~~~lLeklKEK--K~~V~eAl~~aLda~~~~~~~~l~------~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~ 438 (1871)
+++.++..+++. ...||.++.+|+..++.+....+. .+++.+...+.+..+.+|..++.+|.+.+...++.
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~- 251 (876)
T 1qgr_A 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY- 251 (876)
T ss_dssp HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG-
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH-
Confidence 999999999987 588999999999988754111111 35666777778888999999999999999876543
Q ss_pred HHHhhh-hhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHH-hcCCCCCCCCCCCccc
Q 000200 439 VLKVHK-DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI-AGSGGDVATGTSSARV 516 (1871)
Q Consensus 439 ~~~~~k-~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~-~~~~~~~~~~~~~~~~ 516 (1871)
+.+.+. .+++.+..++.|.+++||..|.+++..+.....+ +. ++. .+.. ++. .| .
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~--~~-----~~~------~~~~~~~~-------~~---~ 308 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD--LA-----IEA------SEAAEQGR-------PP---E 308 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HH-----HHH------HHHHHHSS-------CC---S
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHh--Hh-----hhh------ccccccCC-------Cc---c
Confidence 233445 8899999999999999999999999888765321 00 000 0001 110 00 0
Q ss_pred cCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHH
Q 000200 517 QTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIES 596 (1871)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~ 596 (1871)
. . ... +....++.
T Consensus 309 ~---~---~~~-------------------------------------------------------------~~~~~~~~ 321 (876)
T 1qgr_A 309 H---T---SKF-------------------------------------------------------------YAKGALQY 321 (876)
T ss_dssp S---C---CCC-------------------------------------------------------------HHHHHHHH
T ss_pred c---h---hHH-------------------------------------------------------------HHHHHHHH
Confidence 0 0 000 00000000
Q ss_pred HHhccCcHhHHHhh-------hhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHH
Q 000200 597 RLGSLIPADTVGQL-------KSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINY 669 (1871)
Q Consensus 597 ~~~~l~~~~i~~~L-------~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~ 669 (1871)
++ +.++..| .+.+|..|.+|.+-+......... ...+.++.++.. .+.+.|.++...++..+..
T Consensus 322 ----ll-~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~~l~~l~~--~l~~~~~~~r~~a~~~l~~ 392 (876)
T 1qgr_A 322 ----LV-PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVPHVLPFIKE--HIKNPDWRYRDAAVMAFGC 392 (876)
T ss_dssp ----HH-HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHHHHHHHHHH--HTTCSSHHHHHHHHHHHHH
T ss_pred ----Hh-HHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhHHHHHHHHHH--HccCCChHHHHHHHHHHHH
Confidence 00 0011111 246899999998888766655432 224455555542 4678899999999999988
Q ss_pred HHHhcC-CCCccchhhhccchhhccccc--hhhhHHHHHHHHHHHhhch--------HhHHHHHHHhhhhcCChhhHHHH
Q 000200 670 LAATAT-KFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGP--------GFIFERLYKIMKDHKNPKVLSEG 738 (1871)
Q Consensus 670 la~~~~-~fs~~~~~~~l~~lveKlgD~--K~r~~a~e~L~~~aE~~~~--------~~V~~~l~~~~~~~KnPKv~~e~ 738 (1871)
+++... ..-......+++.++.-+.|. .+|..+..+|..+++..++ .-++..++..+. + +|+|+..+
T Consensus 393 i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~-~-~~~v~~~a 470 (876)
T 1qgr_A 393 ILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-A-EPRVASNV 470 (876)
T ss_dssp TSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-S-CHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHc-C-CHHHHHHH
Confidence 775432 111123455777777777775 5899999999999998654 345666666653 3 49999999
Q ss_pred HHHHHHHHHHhcc-------------Ccc--chHhHHHHHhhhcCCCc---cHHHHHHHHHHHHHHHhhhCchhHhhhhc
Q 000200 739 ILWMVSAVEDFGV-------------SHL--KLKDLIDFCKDTGLQSS---AAATRNATIKLLGALHKFVGPDIKGFLAD 800 (1871)
Q Consensus 739 l~wl~~ai~eFG~-------------~~~--~~K~li~~~k~~~l~~s---N~~VR~aAi~Ll~~ly~~~G~~l~~~l~d 800 (1871)
+..+..++..+|- ..+ -+..++..+... +... +..+|..++..++.+-..+|.....++..
T Consensus 471 ~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~-l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~ 549 (876)
T 1qgr_A 471 CWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLET-TDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQK 549 (876)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHH-TTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHH-HhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 9999999998870 112 236777777776 7654 57899999999999999999999999988
Q ss_pred chHHHHHHHHHHHhcCCCCCCCCCcc----cccccc--ccCCCCCCCCCCCCcccc---ccCCcHHHHhhcCCCC--hHH
Q 000200 801 VKPALLSALDAEYEKNPFEGTVVPKK----TVRASE--STSSVSSGGSDGLPREDI---SGKFTPTLVKSLESPD--WKV 869 (1871)
Q Consensus 801 lkpall~~ie~EF~K~~~~~~p~p~R----~~r~~~--~~~~~~~~~~d~lprvDI---s~kit~~l~~~l~d~~--WK~ 869 (1871)
+=|.++..+...+..-.. ......+ .+|... .-+.-. ..+++.++ .+.|-+.++.-+.+.. |.+
T Consensus 550 l~~~l~~~l~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~l~~l~----~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v 624 (876)
T 1qgr_A 550 TTLVIMERLQQVLQMESH-IQSTSDRIQFNDLQSLLCATLQNVL----RKVQHQDALQISDVVMASLLRMFQSTAGSGGV 624 (876)
T ss_dssp HHHHHHHHHHHHHTTTTS-CCSTTHHHHHHHHHHHHHHHHHHHH----TTSCHHHHHTTHHHHHHHHHHHC-----CCHH
T ss_pred HHHHHHHHHHHHHHHHhc-cCChhhHHHHHHHHHHHHHHHHHHH----HHhChhhhhHHHHHHHHHHHHHHHhccCCCCc
Confidence 888888888876532110 0000000 000000 000000 00110111 2334445566666664 899
Q ss_pred HHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccch-hHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhcc-
Q 000200 870 RLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD- 947 (1871)
Q Consensus 870 RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~Ds-Nk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D- 947 (1871)
|.+++..+..|+......+.|-. .+++..|...|.|. +..+...|+.+++.|+.++|..+.+|...+++.++..|.+
T Consensus 625 ~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 703 (876)
T 1qgr_A 625 QEDALMAVSTLVEVLGGEFLKYM-EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNE 703 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCT
T ss_pred cHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCc
Confidence 99999999999986555566653 78899999999887 8999999999999999999999999999999999999987
Q ss_pred -CchhHHHHHHHHHHHHHHhccc--hhhhHHHHHHHh----cccC--C-------cchHHHHHHHHHHHhccCCCC----
Q 000200 948 -NKKHMRECTLTVLDAWLAAVHL--DKMVPYVTTALT----DAKL--G-------AEGRKDLFDWLSKQLTGLSGF---- 1007 (1871)
Q Consensus 948 -~K~~vR~aa~~alda~~~~~gl--~~~~~~i~~~L~----~~~~--~-------p~~r~e~l~wL~~~l~~~~~~---- 1007 (1871)
....+|.+++.++..++..+|- ..+++.+...|. .... + ..+|..++.++...+......
T Consensus 704 ~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~ 783 (876)
T 1qgr_A 704 NVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENV 783 (876)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSC
T ss_pred cccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 4567999999999999988773 344554444443 2110 1 157877777776544432211
Q ss_pred ----cchhhhhhHHh----hhcCCC--CHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 000200 1008 ----PDAAHLLKPAS----IAMTDK--SSDVRKAAEACIVEILRAGGQETIEKN 1051 (1871)
Q Consensus 1008 ----~~~~~~~~p~~----~~L~Dr--~~dVRkaA~~~L~~~m~~~G~~~~~~~ 1051 (1871)
....+++..++ ..++|+ +.+||++|-.+|+.+..++|.+.+..+
T Consensus 784 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 837 (876)
T 1qgr_A 784 HPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLV 837 (876)
T ss_dssp CGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 12233333222 233677 899999999999999999998444333
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-08 Score=124.99 Aligned_cols=377 Identities=12% Similarity=0.064 Sum_probs=258.0
Q ss_pred hHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhc----------
Q 000200 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA---------- 674 (1871)
Q Consensus 605 ~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~---------- 674 (1871)
.++.++.+.+-..|.+|-+.|.+.-... .......|+..+.. .+.+.+|.+...-++..+..+.
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--~~~~~~~L~~il~~----~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVEN--LPTFLVELSRVLAN----PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHC----TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHc----CCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 3556677777788888888887643320 01123344555542 2345677777666666655321
Q ss_pred --CCCCccchhhhccchhhcccc--chhhhHHHHHHHHHHHhhchH----hHHHHHHHhhhhcC--ChhhHHHHHHHHHH
Q 000200 675 --TKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG----FIFERLYKIMKDHK--NPKVLSEGILWMVS 744 (1871)
Q Consensus 675 --~~fs~~~~~~~l~~lveKlgD--~K~r~~a~e~L~~~aE~~~~~----~V~~~l~~~~~~~K--nPKv~~e~l~wl~~ 744 (1871)
..++...-..+-..+++.+++ .++ ..+..++..++....|. -++..++..+ ... +|.++..++.++..
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l-~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANV-TNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHH-HCTTCCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence 123333333344445555554 467 77888888888877663 3556666665 445 89999999999999
Q ss_pred HHHHhccCcc--chHhHHHHHhhhcCCCc--cHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCC
Q 000200 745 AVEDFGVSHL--KLKDLIDFCKDTGLQSS--AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (1871)
Q Consensus 745 ai~eFG~~~~--~~K~li~~~k~~~l~~s--N~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~ 820 (1871)
+.+++....+ ....++..+..+ |++. |+.||.+|++.++.+-.++++.+... .|.
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~-l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~--------------~~~------ 215 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQG-MRKEEPSNNVKLAATNALLNSLEFTKANFDKE--------------SER------ 215 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHH-HSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSH--------------HHH------
T ss_pred HHHhCCchhhHhHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh--------------HHH------
Confidence 9998742222 235677777776 8888 89999999998877643322111000 000
Q ss_pred CCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCcc-chHHH
Q 000200 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTG-ELFGG 899 (1871)
Q Consensus 821 ~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~g-eL~~a 899 (1871)
..+-+.+...+.+.++.+|..+++.+..++....+++.+.. . +++..
T Consensus 216 -------------------------------~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~ 263 (462)
T 1ibr_B 216 -------------------------------HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAI 263 (462)
T ss_dssp -------------------------------HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHH
T ss_pred -------------------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 00112233345678899999999999999987667777775 7 89998
Q ss_pred HhhhccchhHhHHHHHHHHHHHHHHhc---------------------ChhHHhhhhhhhHHHHHHhcc-------Cchh
Q 000200 900 LRGRLYDSNKNLVMATLITLGAVASAM---------------------GPAVEKSSKGVLSDILKCLGD-------NKKH 951 (1871)
Q Consensus 900 Lk~rl~DsNk~lv~~al~ii~~lA~am---------------------G~~~~k~~k~l~~~il~~l~D-------~K~~ 951 (1871)
+-..+.|.+..+...|+.++..++... ..-+++|...++|.++..|.+ ....
T Consensus 264 ~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~ 343 (462)
T 1ibr_B 264 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN 343 (462)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCS
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccch
Confidence 888899999999999999999988753 223456778899999988864 3458
Q ss_pred HHHHHHHHHHHHHHhccchhhhHH----HHHHHhcccCCcchHHHHHHHHHHHhccCCC---CcchhhhhhHHhhhcCCC
Q 000200 952 MRECTLTVLDAWLAAVHLDKMVPY----VTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDK 1024 (1871)
Q Consensus 952 vR~aa~~alda~~~~~gl~~~~~~----i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~---~~~~~~~~~p~~~~L~Dr 1024 (1871)
+|.++..+|+..+..+| +.+++. +...|.++ ++..|...+.-|..-...... .+....++.+++.+|.|.
T Consensus 344 ~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~ 420 (462)
T 1ibr_B 344 PCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420 (462)
T ss_dssp HHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998 565554 44455543 678888888777754443331 123455666688899999
Q ss_pred CHHHHHHHHHHHHHHHHhcCH
Q 000200 1025 SSDVRKAAEACIVEILRAGGQ 1045 (1871)
Q Consensus 1025 ~~dVRkaA~~~L~~~m~~~G~ 1045 (1871)
++.||.+|..+|+.+...+|.
T Consensus 421 ~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 421 SVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999998876
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.04 E-value=5.1e-07 Score=116.84 Aligned_cols=177 Identities=14% Similarity=0.181 Sum_probs=128.7
Q ss_pred hhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000200 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1871)
Q Consensus 288 ~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~ 367 (1871)
.++.+.+.+.+=.+|++++..+.-+...-. |...+.-.+-+.+.+.|..+-.++.-.+..+++.- ...+..+
T Consensus 16 ~~i~~~L~~~~~~~k~~~~~kli~~~~~G~----d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~----~e~~~l~ 87 (591)
T 2vgl_B 16 FELKAELNNEKKEKRKEAVKKVIAAMTVGK----DVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ----PDMAIMA 87 (591)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHTTC----CCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS----HHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC----chHHHHH
Confidence 356777888888899999999875432111 33444444555788999988888888888887751 2235677
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhH
Q 000200 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1871)
Q Consensus 368 ~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~ 447 (1871)
++.+..-+.+..+.||..+..+|-.+... --...+++++...+.+.+|.||..+..-+.+.....+.... . ..++
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~~~--~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~-~--~~~~ 162 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIRVD--KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE-D--QGFL 162 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCCSG--GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH-H--HHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCChH--HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc-c--ccHH
Confidence 88999999999999997665444332110 11234556688899999999999999999999885543221 0 3578
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000200 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1871)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1871)
+.+..+|+|+++.||.+|..+|+.+...-+
T Consensus 163 ~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 163 DSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999876543
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3.1e-08 Score=122.11 Aligned_cols=396 Identities=12% Similarity=0.124 Sum_probs=263.2
Q ss_pred hhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHh--------c--
Q 000200 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITD--VNIAVAVEAIQAIGNLARGL--------R-- 357 (1871)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~D--sNv~vv~~A~~~i~~lA~gL--------r-- 357 (1871)
....+-++.=..|++|-+.|..+... +..+.+..|-.++.+ .+..+-..|+.++..+.+.- .
T Consensus 6 ~L~~~~s~d~~~r~~Ae~~L~~~~~~------~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 6 ILEKTVSPDRLELEAAQKFLERAAVE------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhh------ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 44556677778999999999886542 234566677777764 47888899998888876331 0
Q ss_pred -cccccc-hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc-C-CChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHH
Q 000200 358 -THFSGS-SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-C-LNLVDVVEDVKTSVKNK--VPLVRSLTLNWVTFCI 431 (1871)
Q Consensus 358 -~~F~~y-~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~-~-~~l~~~~e~i~~al~~K--nP~vk~etl~~L~r~l 431 (1871)
..+... ...+-..+++.+++....| ..+..++-.++.+. . ....++++.+...+.+. +|.+|..++..|....
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~ 158 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 111111 2234456778888888888 88889999998761 1 24568899999999998 9999999999999888
Q ss_pred hhCChhHHHHhhhhhHHHHHhhhCCC--CHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCC
Q 000200 432 ETSSKAAVLKVHKDYVPICMECLNDG--TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVAT 509 (1871)
Q Consensus 432 ~~~~~~~~~~~~k~~~~~l~k~l~Ds--~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~ 509 (1871)
+......+......+++.++.+++|. +++||.+|..+++.++..++.. + + ...-+.-+
T Consensus 159 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~-~----~--~~~~~~~l------------- 218 (462)
T 1ibr_B 159 QDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN-F----D--KESERHFI------------- 218 (462)
T ss_dssp HHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH-H----T--SHHHHHHH-------------
T ss_pred HhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHh-h----h--hhHHHHHH-------------
Confidence 76533334455577899999999999 7999999999998876322100 0 0 00000000
Q ss_pred CCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 000200 510 GTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEM 589 (1871)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 589 (1871)
T Consensus 219 -------------------------------------------------------------------------------- 218 (462)
T 1ibr_B 219 -------------------------------------------------------------------------------- 218 (462)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhc-cchhHH-HHHHHHHhcCCCccchHHHHHHHHHHH
Q 000200 590 SLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN-LDQSVE-ILVRLVCMLPGWSEKNVQVQQQVIEVI 667 (1871)
Q Consensus 590 s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~-~~~~~~-~lvr~l~~~PgwkesNfqV~~~~leil 667 (1871)
-..+...+.+.++..|..+++-|....+.... ...... -++..+.. ..+|.+-.|....++++
T Consensus 219 -------------~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~v~~~a~~~l 283 (462)
T 1ibr_B 219 -------------MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE--AMKSDIDEVALQGIEFW 283 (462)
T ss_dssp -------------HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHH--HHHCSSHHHHHHHHHHH
T ss_pred -------------HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCchHHHHHHHHHH
Confidence 01111233455666777777777766655221 111222 23332221 23566777888888888
Q ss_pred HHHHHhc-------------------C--CCCccchhhhccchhhcccc---------chhhhHHHHHHHHHHHhhchHh
Q 000200 668 NYLAATA-------------------T--KFPKKCVVLCLLGISERVAD---------IKTRAHAMKCLTTFSEAVGPGF 717 (1871)
Q Consensus 668 ~~la~~~-------------------~--~fs~~~~~~~l~~lveKlgD---------~K~r~~a~e~L~~~aE~~~~~~ 717 (1871)
..+++.. . .+.+.....+++.++..+.+ ...|..+..+|..+++..+ +.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~ 362 (462)
T 1ibr_B 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DD 362 (462)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TT
T ss_pred HHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HH
Confidence 7777542 0 11122234456666555543 3689999999999999887 55
Q ss_pred HHHHHHHhh---hhcCChhhHHHHHHHHHHHHHHhccCcc--chHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCc
Q 000200 718 IFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHL--KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 792 (1871)
Q Consensus 718 V~~~l~~~~---~~~KnPKv~~e~l~wl~~ai~eFG~~~~--~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~ 792 (1871)
++..+++.+ ..+.+++++..++..++.+.+.++...+ .+..++..+..+ |.+.++.||.+|...|+.+-.++|+
T Consensus 363 ~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~-l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 363 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL-MKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHG-GGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHhccc
Confidence 555555433 4678999999999999998874332222 236788888887 9999999999999999999999998
Q ss_pred hh--HhhhhcchHHHHHHH
Q 000200 793 DI--KGFLADVKPALLSAL 809 (1871)
Q Consensus 793 ~l--~~~l~dlkpall~~i 809 (1871)
.+ ..|+..+=|.++..|
T Consensus 442 ~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 442 AAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp GCCSTTTHHHHHHHHHCC-
T ss_pred ccccHHHHHHHHHHHHHHh
Confidence 76 467666656555444
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.84 E-value=4.9e-07 Score=116.99 Aligned_cols=386 Identities=11% Similarity=0.107 Sum_probs=251.0
Q ss_pred hHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhh
Q 000200 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (1871)
Q Consensus 605 ~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~ 684 (1871)
++.+.|.+.+-..|.+++..+.-..-...+. ...++..+ + -+.++|+.+-+.+.-.+..++...+. .+.+
T Consensus 17 ~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~---~~~~~~vi-~--l~~s~~~~~Krl~yl~l~~~~~~~~e----~~~l 86 (591)
T 2vgl_B 17 ELKAELNNEKKEKRKEAVKKVIAAMTVGKDV---SSLFPDVV-N--CMQTDNLELKKLVYLYLMNYAKSQPD----MAIM 86 (591)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC---GGGHHHHH-H--TTSSSCHHHHHHHHHHHHHHHHHSHH----HHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh---HHHHHHHH-H--HhCCCCHHHHHHHHHHHHHHcccCch----HHHH
Confidence 4667788888889999999988544332221 12222222 2 25788999998888888877764221 2345
Q ss_pred hccchhhccccc--hhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHH
Q 000200 685 CLLGISERVADI--KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDF 762 (1871)
Q Consensus 685 ~l~~lveKlgD~--K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~ 762 (1871)
+++.+..-+.|. -.|..|-.+|..+....-.++++..+...+ .+.+|-|+..++..+..+.+ .+...+.-..+++.
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L-~d~~~~VRk~A~~al~~i~~-~~p~~~~~~~~~~~ 164 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCL-KDEDPYVRKTAAVCVAKLHD-INAQMVEDQGFLDS 164 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHS-SCSCHHHHHHHHHHHHHHHH-SSCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHh-hChhhcccccHHHH
Confidence 566666556663 356665444433332223345566676664 79999999999999999887 33443433468889
Q ss_pred HhhhcCCCccHHHHHHHHHHHHHHHhhhCch---------hHhhh---hcchHHHHHHHHHHHhcCCCCCCCCCcccccc
Q 000200 763 CKDTGLQSSAAATRNATIKLLGALHKFVGPD---------IKGFL---ADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830 (1871)
Q Consensus 763 ~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~---------l~~~l---~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~ 830 (1871)
+..+ |.+.|+.||.+|+.+|+.+...-+.. +...+ .+..|-.+..|=.-+.+... .. .
T Consensus 165 l~~l-L~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~---~~-~----- 234 (591)
T 2vgl_B 165 LRDL-IADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNP---KD-D----- 234 (591)
T ss_dssp HHHT-TSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCC---CS-H-----
T ss_pred HHHH-hCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCC---CC-h-----
Confidence 9998 99999999999999999987654322 11111 12122211111122233210 00 0
Q ss_pred ccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCC--CCCc----cchHHHHhhhc
Q 000200 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ--PAGT----GELFGGLRGRL 904 (1871)
Q Consensus 831 ~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~--p~~~----geL~~aLk~rl 904 (1871)
+-..++-+.+...+.+.++-+|.||...+..+. +.+. |... +.+...|. .|
T Consensus 235 ------------------~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~----~~~~~~~~~~~~~~~~~~~~L~-~L 291 (591)
T 2vgl_B 235 ------------------REAQSICERVTPRLSHANSAVVLSAVKVLMKFL----ELLPKDSDYYNMLLKKLAPPLV-TL 291 (591)
T ss_dssp ------------------HHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC----CSCCBTTBSHHHHHHHTHHHHH-HH
T ss_pred ------------------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh----hccCCCHHHHHHHHHHHHHHHH-HH
Confidence 001122234556688999999999998886654 2231 1111 12223333 34
Q ss_pred cchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhccc
Q 000200 905 YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAK 984 (1871)
Q Consensus 905 ~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~ 984 (1871)
.+++.++.-.|++.++.++..-..-+..|.+.++ -.+.|. ..||..+++.|-.++...+.+.+++.+.+++.+.
T Consensus 292 ~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~----~~~~d~-~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~- 365 (591)
T 2vgl_B 292 LSGEPEVQYVALRNINLIVQKRPEILKQEIKVFF----VKYNDP-IYVKLEKLDIMIRLASQANIAQVLAELKEYATEV- 365 (591)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS----CCTTSC-HHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS-
T ss_pred hcCCccHHHHHHHHHHHHHHhChHHHHHHHHhhe----eccCCh-HHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC-
Confidence 5678899999999999999876666777766542 234555 9999999999999888888888888888888754
Q ss_pred CCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcC
Q 000200 985 LGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1871)
Q Consensus 985 ~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G 1044 (1871)
+++.|.++..+|...-...+ +....++..++..|.|....||+.+-.++..++....
T Consensus 366 -d~~~r~~~v~aI~~la~~~~--~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p 422 (591)
T 2vgl_B 366 -DVDFVRKAVRAIGRCAIKVE--QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP 422 (591)
T ss_dssp -CHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred -CHHHHHHHHHHHHHHHHhCh--hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence 57899999999886554432 2345556668888899999999988888888877654
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=98.68 E-value=9.7e-07 Score=112.19 Aligned_cols=376 Identities=12% Similarity=0.090 Sum_probs=244.3
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCC-CC--hHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhccccccc-
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GD--FTEVCRTLKKLITDV-NIAVAVEAIQAIGNLARGLRTHFSGS- 363 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~-~d--y~eL~~~Lkk~l~Ds-Nv~vv~~A~~~i~~lA~gLr~~F~~y- 363 (1871)
.+.+.+.+..|..|.+|+..|..+++...-.+ .. -..++..|-..+.+. |..+...|+.+++.|+.+-. .+..+
T Consensus 91 ~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~ 169 (530)
T 1wa5_B 91 QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS-AQTKVV 169 (530)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH-HHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH-HHHHHH
Confidence 68888999999999999999999875321110 00 023577788888875 99999999999999998532 12222
Q ss_pred -hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCCh
Q 000200 364 -SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436 (1871)
Q Consensus 364 -~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~------l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~ 436 (1871)
....+|.++.-+++..+.|++.+..+|-.++.. ... -..+++.+...+.+.++.++..++..|........+
T Consensus 170 ~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 248 (530)
T 1wa5_B 170 VDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGD-STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP 248 (530)
T ss_dssp HHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-CccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCC
Confidence 246799999999999999999999999888753 100 114577888889998899998887777766644311
Q ss_pred hHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 000200 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARV 516 (1871)
Q Consensus 437 ~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~ 516 (1871)
.........++|.++.++.+.+++||..|+.+|+.+..... . .+..+++..
T Consensus 249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-------------~---~~~~~~~~~------------- 299 (530)
T 1wa5_B 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ-------------E---AIQAVIDVR------------- 299 (530)
T ss_dssp CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH-------------H---HHHHHHHTT-------------
T ss_pred CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCH-------------H---HHHHHHhcC-------------
Confidence 11112346789999999999999999999999987753211 0 111111100
Q ss_pred cCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHH
Q 000200 517 QTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIES 596 (1871)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~ 596 (1871)
T Consensus 300 -------------------------------------------------------------------------------- 299 (530)
T 1wa5_B 300 -------------------------------------------------------------------------------- 299 (530)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHH
Q 000200 597 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYL 670 (1871)
Q Consensus 597 ~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~------~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~l 670 (1871)
+-+.++..|.+.+|..|..|+..+.......+.. ......|+.+| .+.+..|....+.+|..+
T Consensus 300 -----~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL------~~~~~~vr~~A~~aL~~l 368 (530)
T 1wa5_B 300 -----IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL------SSPKENIKKEACWTISNI 368 (530)
T ss_dssp -----CHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT------TCSCHHHHHHHHHHHHHH
T ss_pred -----cHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH------cCCCHHHHHHHHHHHHHH
Confidence 0122344455566777777766665444221110 01234445444 345788888888888877
Q ss_pred HHhcCCCCccch-hhhccchhhcc--ccchhhhHHHHHHHHHHHhhch--Hh--------HHHHHHHhhhhcCChhhHHH
Q 000200 671 AATATKFPKKCV-VLCLLGISERV--ADIKTRAHAMKCLTTFSEAVGP--GF--------IFERLYKIMKDHKNPKVLSE 737 (1871)
Q Consensus 671 a~~~~~fs~~~~-~~~l~~lveKl--gD~K~r~~a~e~L~~~aE~~~~--~~--------V~~~l~~~~~~~KnPKv~~e 737 (1871)
+......-...+ .-+++.+++-+ ++.+++..+..+|..++...++ ++ ++..++.. ..+.+|+++..
T Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~l-l~~~~~~v~~~ 447 (530)
T 1wa5_B 369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDL-LEIADNRIIEV 447 (530)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHH-TTTCCHHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHH-HhCCCHHHHHH
Confidence 642111000000 12444454444 4567899999999999886554 32 34445554 36789999999
Q ss_pred HHHHHHHHHHHhccC------ccc-h------HhHHHHHhhhcCCCccHHHHHHHHHHHHHHHh
Q 000200 738 GILWMVSAVEDFGVS------HLK-L------KDLIDFCKDTGLQSSAAATRNATIKLLGALHK 788 (1871)
Q Consensus 738 ~l~wl~~ai~eFG~~------~~~-~------K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~ 788 (1871)
++..|..++....-. .++ . ...++.+..+ +.+.|+.|+..|..++..+|.
T Consensus 448 al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L-~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 448 TLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNC-QQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGG-GGCSCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHH-HcCCCHHHHHHHHHHHHHHCC
Confidence 999988888643210 111 1 1235567777 899999999999988765553
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=98.65 E-value=6.9e-07 Score=110.01 Aligned_cols=377 Identities=12% Similarity=0.088 Sum_probs=240.8
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHh-hh-ccc------hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcC
Q 000200 604 ADTVGQLKSAVWKERLEAISSLRQQVEA-VQ-NLD------QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT 675 (1871)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~e~l~~~v~~-~~-~~~------~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~ 675 (1871)
+.++..|.+.+...|..|+..+.+.+.. .+ ... .....|++.|. .+.|..|+...+.++..++....
T Consensus 23 ~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~-----~~~~~~v~~~a~~~L~~l~~~~~ 97 (450)
T 2jdq_A 23 SDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLK-----RKENCTLQFESAWVLTNIASGNS 97 (450)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHC-----CCCCHHHHHHHHHHHHHHhcCCH
Confidence 5678889999999999999999987652 11 110 22445555553 12378899999999988875211
Q ss_pred CCCccch-hhhccchhhcccc--chhhhHHHHHHHHHHHhhc--hH-----hHHHHHHHhhhhcCChhhHHHHHHHHHHH
Q 000200 676 KFPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG--PG-----FIFERLYKIMKDHKNPKVLSEGILWMVSA 745 (1871)
Q Consensus 676 ~fs~~~~-~~~l~~lveKlgD--~K~r~~a~e~L~~~aE~~~--~~-----~V~~~l~~~~~~~KnPKv~~e~l~wl~~a 745 (1871)
...+..+ .-+++.++.-+.+ ..+|..+..+|..+++... -. -++..++..+....++.++..++..+..+
T Consensus 98 ~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 98 LQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 1111111 2255556655544 5789999999998887421 11 13556666654457899999999888887
Q ss_pred HHHhcc--CccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCC
Q 000200 746 VEDFGV--SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (1871)
Q Consensus 746 i~eFG~--~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~ 823 (1871)
....+. ...-+..+++.+... +.+.|+.||..|...|+.+-....+ .... +-+
T Consensus 178 ~~~~~~~~~~~~~~~~l~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~~------------~~~~----~~~-------- 232 (450)
T 2jdq_A 178 CRGKSPPPEFAKVSPCLNVLSWL-LFVSDTDVLADACWALSYLSDGPND------------KIQA----VID-------- 232 (450)
T ss_dssp HCCSSSCCCGGGTGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSSHH------------HHHH----HHH--------
T ss_pred hCCCCCCCCHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHCCCcH------------HHHH----HHH--------
Confidence 753311 111236788888887 9999999999998888765432110 0000 000
Q ss_pred CccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhh
Q 000200 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR 903 (1871)
Q Consensus 824 p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~r 903 (1871)
..+-+.++.-+.+.+|.+|..|+..+..|........+.-.-..++..|...
T Consensus 233 ----------------------------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 284 (450)
T 2jdq_A 233 ----------------------------AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHL 284 (450)
T ss_dssp ----------------------------TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHH
T ss_pred ----------------------------cCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHH
Confidence 0123467778889999999999999999875321111100001367788888
Q ss_pred ccchhHhHHHHHHHHHHHHHHhcChhHHhhh-hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc---ch-----hhhH
Q 000200 904 LYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LD-----KMVP 974 (1871)
Q Consensus 904 l~DsNk~lv~~al~ii~~lA~amG~~~~k~~-k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g---l~-----~~~~ 974 (1871)
|.+.|..+...|+.+++.|+.+-........ ..++|.++..|.|..+.||.++..+|..+..... .. .+++
T Consensus 285 l~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~ 364 (450)
T 2jdq_A 285 LSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIK 364 (450)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHH
Confidence 8899999999999999999874322233332 3789999999999999999999999988875421 11 3455
Q ss_pred HHHHHHhcccCCcchHHHHHHHHHHHhccCCC--------Ccchhhhh------hHHhhhcCCCCHHHHHHHHHHHHHHH
Q 000200 975 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAHLL------KPASIAMTDKSSDVRKAAEACIVEIL 1040 (1871)
Q Consensus 975 ~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~--------~~~~~~~~------~p~~~~L~Dr~~dVRkaA~~~L~~~m 1040 (1871)
.+...|.++ ++..|..++.-|..-+..... ...+...+ ..+...+.+.+.+||+.|..+|..+.
T Consensus 365 ~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 365 PLCDLLTVM--DSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHGGGSS--CHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC--CHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 666666644 567777776555433321110 01111111 22334457778888888888877654
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=98.62 E-value=5.4e-07 Score=114.56 Aligned_cols=380 Identities=12% Similarity=0.084 Sum_probs=244.8
Q ss_pred cHhHHHhhhhccHHHHHHHHHHHHHHHHhhh-c-c-----chhHHHHHHHHHhcCCCcc-chHHHHHHHHHHHHHHHHhc
Q 000200 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQ-N-L-----DQSVEILVRLVCMLPGWSE-KNVQVQQQVIEVINYLAATA 674 (1871)
Q Consensus 603 ~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~-~-~-----~~~~~~lvr~l~~~Pgwke-sNfqV~~~~leil~~la~~~ 674 (1871)
-+.++..|.+.++..|..|+..|.+.+.... + . ......|+++| ++ .|..|+...+.+|..++...
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L------~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM------RENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTT------STTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHh------CCCCCHHHHHHHHHHHHHHhCCC
Confidence 3567899999999999999999987765421 1 0 01123344333 33 37889988888888776521
Q ss_pred CCCCccch-hhhccchhhccc--cchhhhHHHHHHHHHHHhh--chHh-----HHHHHHHhhhhcCChhhHHHHHHHHHH
Q 000200 675 TKFPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEAV--GPGF-----IFERLYKIMKDHKNPKVLSEGILWMVS 744 (1871)
Q Consensus 675 ~~fs~~~~-~~~l~~lveKlg--D~K~r~~a~e~L~~~aE~~--~~~~-----V~~~l~~~~~~~KnPKv~~e~l~wl~~ 744 (1871)
+......+ .-+++.++.-+. +..++..|..+|..++... .... ++..++..+ .+.++.++..++..|..
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHH
Confidence 11111100 124555555554 4678999999999988642 1122 344555554 45889999888887777
Q ss_pred HHHHhcc--CccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCC
Q 000200 745 AVEDFGV--SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 822 (1871)
Q Consensus 745 ai~eFG~--~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p 822 (1871)
+....+. ...-...+++.+... |.+.|+.||..|...|+.+-.... .....+ + .
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~------------~~~~~~---~-~------- 297 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKL-IYSMDTETLVDACWAISYLSDGPQ------------EAIQAV---I-D------- 297 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHHSSCH------------HHHHHH---H-H-------
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHH-HcCCCHHHHHHHHHHHHHHhCCCH------------HHHHHH---H-h-------
Confidence 7653311 112235778888887 999999999999999987653211 111100 0 0
Q ss_pred CCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhh
Q 000200 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (1871)
Q Consensus 823 ~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~ 902 (1871)
..+-+.++.-+.+.+|.+|..|+..+..|........+.-.-..++..|..
T Consensus 298 -----------------------------~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 348 (530)
T 1wa5_B 298 -----------------------------VRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL 348 (530)
T ss_dssp -----------------------------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred -----------------------------cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHH
Confidence 012356777888999999999999999887421110000000236778888
Q ss_pred hccchhHhHHHHHHHHHHHHHHhcChhHHhhh-hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccc----------hh
Q 000200 903 RLYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----------DK 971 (1871)
Q Consensus 903 rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~-k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl----------~~ 971 (1871)
.|.+.+..+...|+.+|+.|+.+-........ ..++|.++..|.+....+|.++..+|..+....+- ..
T Consensus 349 lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~ 428 (530)
T 1wa5_B 349 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 428 (530)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCC
Confidence 88899999999999999999874322222222 46899999999999999999999999988765321 12
Q ss_pred hhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCC--------Ccchh------hhhhHHhhhcCCCCHHHHHHHHHHHH
Q 000200 972 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAA------HLLKPASIAMTDKSSDVRKAAEACIV 1037 (1871)
Q Consensus 972 ~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~--------~~~~~------~~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1871)
+++.+...|.++ ++..|..++.-|..-+..... ..... ..+..+...+.|.+.+||+.|..+|.
T Consensus 429 ~l~~L~~ll~~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~ 506 (530)
T 1wa5_B 429 CIKPLCDLLEIA--DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506 (530)
T ss_dssp CHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 556667777654 577777777666544432211 01111 11334556678999999999998887
Q ss_pred HHHHhcC
Q 000200 1038 EILRAGG 1044 (1871)
Q Consensus 1038 ~~m~~~G 1044 (1871)
.+...-.
T Consensus 507 ~~~~~~~ 513 (530)
T 1wa5_B 507 TYFGEEE 513 (530)
T ss_dssp HHSSSCC
T ss_pred HHCCccc
Confidence 6665433
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=98.58 E-value=7.6e-06 Score=100.66 Aligned_cols=184 Identities=14% Similarity=0.076 Sum_probs=128.8
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHH-cccCCCCCCcc-chHHHHhhhccch-hHhHHHHHHHHHHHHHHhcChhHHh
Q 000200 856 PTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTG-ELFGGLRGRLYDS-NKNLVMATLITLGAVASAMGPAVEK 932 (1871)
Q Consensus 856 ~~l~~~l~d~~WK~RkEaLe~v~~il~~-ankrI~p~~~g-eL~~aLk~rl~Ds-Nk~lv~~al~ii~~lA~amG~~~~k 932 (1871)
+.++..+.+.+..+|..|+..+.+++.. .++.++.-.-. .++..|-..|.+. |..+...|+.+++.++..-......
T Consensus 23 ~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 102 (450)
T 2jdq_A 23 SDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRI 102 (450)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4588889999999999999999999862 23332221112 5778888888777 8999999999999998743222222
Q ss_pred h-hhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc-c------hhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000200 933 S-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-L------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1871)
Q Consensus 933 ~-~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g-l------~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~ 1004 (1871)
. ...++|.++..|.+..+.+|..|..+|..+..... . ...++.+...|.+. .++..|..+...|. .+...
T Consensus 103 ~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~v~~~a~~~L~-~l~~~ 180 (450)
T 2jdq_A 103 VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ-NRLTMTRNAVWALS-NLCRG 180 (450)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC-CCHHHHHHHHHHHH-HHHCC
T ss_pred HHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-CCHHHHHHHHHHHH-HHhCC
Confidence 2 24689999999999999999999999988775421 0 23566677777642 25677777765555 44433
Q ss_pred C-C-C--cchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 1005 S-G-F--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 1005 ~-~-~--~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
. . . ......+.+++..|.+.+.+||..|..+|..+..
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 221 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSD 221 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHC
Confidence 2 1 1 1234566668888889999999988887766543
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-06 Score=110.76 Aligned_cols=379 Identities=12% Similarity=0.088 Sum_probs=245.2
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhhh-c-c-----chhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC
Q 000200 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQ-N-L-----DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1871)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~-~-~-----~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~ 676 (1871)
+.++..|.+.++..|+.|...|...+.... + . ......|+.+|. .+.|..|+...+.+|..++.....
T Consensus 77 ~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~-----~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 77 PAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLT-----REDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhC-----CCCCHHHHHHHHHHHHHHhCCCHH
Confidence 567889999999999999999987765422 1 1 122455666663 223478888888888888763211
Q ss_pred CCccch-hhhccchhhccc--cchhhhHHHHHHHHHHHhhch--Hh-----HHHHHHHhhhhcCChhhHHHHHHHHHHHH
Q 000200 677 FPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGP--GF-----IFERLYKIMKDHKNPKVLSEGILWMVSAV 746 (1871)
Q Consensus 677 fs~~~~-~~~l~~lveKlg--D~K~r~~a~e~L~~~aE~~~~--~~-----V~~~l~~~~~~~KnPKv~~e~l~wl~~ai 746 (1871)
.....+ .-+++.++.-+. +..++..+..+|..++..... .. ++..++..+..+.++.++..++..|..+.
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 111111 124555555554 456899999999998863211 12 34566666557789999998888877776
Q ss_pred HHhcc-CccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCc
Q 000200 747 EDFGV-SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPK 825 (1871)
Q Consensus 747 ~eFG~-~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~ 825 (1871)
..... ...-...+++.+... |.+.|+.||..|...|+.+-....+.+..++ .
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~----------------~---------- 284 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARL-IHSNDEEVLTDACWALSYLSDGTNDKIQAVI----------------E---------- 284 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSCHHHHHHHH----------------H----------
T ss_pred cCCCCCcHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH----------------H----------
Confidence 54311 112236788888888 9999999999999988765422111111100 0
Q ss_pred cccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc
Q 000200 826 KTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY 905 (1871)
Q Consensus 826 R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~ 905 (1871)
..+-+.|+.-+.+.+|.+|..|+..|..|........+.-.-..++..|...|.
T Consensus 285 --------------------------~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~ 338 (528)
T 4b8j_A 285 --------------------------AGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT 338 (528)
T ss_dssp --------------------------TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH
T ss_pred --------------------------cCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc
Confidence 012346788888999999999999999888521111110000235677777787
Q ss_pred ch-hHhHHHHHHHHHHHHHHhcChhHHhh-hhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccc--------hhhhHH
Q 000200 906 DS-NKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKMVPY 975 (1871)
Q Consensus 906 Ds-Nk~lv~~al~ii~~lA~amG~~~~k~-~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl--------~~~~~~ 975 (1871)
+. +..+...|+.+++.|+.+-....... ...++|.++..|.+....+|..|..+|..+....+- ..+++.
T Consensus 339 ~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~ 418 (528)
T 4b8j_A 339 QNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKP 418 (528)
T ss_dssp SCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHH
Confidence 77 99999999999999987422222222 337899999999999999999999999988766211 234556
Q ss_pred HHHHHhcccCCcchHHHHHHHHHHHhccCCC--------Ccchhh------hhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 976 VTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAH------LLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 976 i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~--------~~~~~~------~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
+...|.++ ++..+..++.-|..-+..... ...... .+..+...+.+.+.+|++.|..+|..+..
T Consensus 419 L~~lL~~~--d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 419 LCDLLICP--DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HHHGGGCS--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 66767654 566777666555544321110 011111 23445667789999999999999987665
Q ss_pred h
Q 000200 1042 A 1042 (1871)
Q Consensus 1042 ~ 1042 (1871)
.
T Consensus 497 ~ 497 (528)
T 4b8j_A 497 D 497 (528)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.5e-05 Score=101.11 Aligned_cols=378 Identities=11% Similarity=0.088 Sum_probs=237.3
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCCC---ChHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHhccccccc-
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPG---DFTEVCRTLKKLITDVN-IAVAVEAIQAIGNLARGLRTHFSGS- 363 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~---dy~eL~~~Lkk~l~DsN-v~vv~~A~~~i~~lA~gLr~~F~~y- 363 (1871)
.+.+.+.+..|..|.+|+..|..+++...-.+. --..++..|.+.+.+.+ ..+...|+.+|+.|+.+-...-...
T Consensus 78 ~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~ 157 (528)
T 4b8j_A 78 AMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVI 157 (528)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 688899999999999999999998753321110 01235777778888555 8999999999999998522111111
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChh------hhHHHHHHHh-hcCCchhHHHHHHHHHHHHhhCCh
Q 000200 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSV-KNKVPLVRSLTLNWVTFCIETSSK 436 (1871)
Q Consensus 364 ~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~------~~~e~i~~al-~~KnP~vk~etl~~L~r~l~~~~~ 436 (1871)
....+|.++.-+++..+.|++.+..+|-.++.. ..... ..++.++..| .+.++.++..++..|.......+.
T Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~ 236 (528)
T 4b8j_A 158 DHGAVPIFVKLLGSSSDDVREQAVWALGNVAGD-SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ 236 (528)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHT-CHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSC
T ss_pred hCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-ChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCC
Confidence 236899999999999999999999999988753 11111 2466777788 678899998888777766654322
Q ss_pred hHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 000200 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARV 516 (1871)
Q Consensus 437 ~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~ 516 (1871)
.. ......++|.++.++.+.+++||..|+.+|+.+... ... .+..+++..
T Consensus 237 ~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--~~~--------------~~~~~~~~g------------- 286 (528)
T 4b8j_A 237 PS-FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG--TND--------------KIQAVIEAG------------- 286 (528)
T ss_dssp CC-HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--CHH--------------HHHHHHHTT-------------
T ss_pred Cc-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHH--------------HHHHHHHcC-------------
Confidence 11 123467899999999999999999999998876531 110 111111110
Q ss_pred cCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHH
Q 000200 517 QTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIES 596 (1871)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~ 596 (1871)
T Consensus 287 -------------------------------------------------------------------------------- 286 (528)
T 4b8j_A 287 -------------------------------------------------------------------------------- 286 (528)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHH
Q 000200 597 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYL 670 (1871)
Q Consensus 597 ~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~------~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~l 670 (1871)
+-+.++..|.+.++..|..|+..|.......+.. ......|+.+|.. +.+..|......+|..+
T Consensus 287 -----~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-----~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 287 -----VCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQ-----NLKKSIKKEACWTISNI 356 (528)
T ss_dssp -----CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHS-----CCCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcC-----CCcHHHHHHHHHHHHHH
Confidence 0011223333444444555544443332211000 1124556666541 12678888888888877
Q ss_pred HHhcCCCCccc-hhhhccchhhcc--ccchhhhHHHHHHHHHHHhhchHh--------HHHHHHHhhhhcCChhhHHHHH
Q 000200 671 AATATKFPKKC-VVLCLLGISERV--ADIKTRAHAMKCLTTFSEAVGPGF--------IFERLYKIMKDHKNPKVLSEGI 739 (1871)
Q Consensus 671 a~~~~~fs~~~-~~~~l~~lveKl--gD~K~r~~a~e~L~~~aE~~~~~~--------V~~~l~~~~~~~KnPKv~~e~l 739 (1871)
+......-... -.-+++.+++-+ +|.+++..+..+|..++....++. ++..++.. ..+.+++++..++
T Consensus 357 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~l-L~~~d~~v~~~al 435 (528)
T 4b8j_A 357 TAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDL-LICPDIRIVTVCL 435 (528)
T ss_dssp HTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHG-GGCSCHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHH-HcCCCHHHHHHHH
Confidence 64211000000 012344454444 356889999999999888644432 23445555 4679999999999
Q ss_pred HHHHHHHHHhcc-------------CccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhh
Q 000200 740 LWMVSAVEDFGV-------------SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789 (1871)
Q Consensus 740 ~wl~~ai~eFG~-------------~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~ 789 (1871)
..|..++....- ..+.--..++.+..+ ..|.|+.|+..|..++..++..
T Consensus 436 ~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L-~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 436 EGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENL-QSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHG-GGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHH-HcCCCHHHHHHHHHHHHHHCCC
Confidence 988888764321 011111234456666 8899999999999988766543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-06 Score=117.42 Aligned_cols=193 Identities=17% Similarity=0.198 Sum_probs=161.1
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcC-CCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh--ccccccchh
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTK-RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL--RTHFSGSSR 365 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~p-Ki~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gL--r~~F~~y~~ 365 (1871)
+.+..+..++=.+|+++-..+-.++... -...-.| .++..|++-+.|-+-. --|+..++.||+-. .+.+.+|.-
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~ 94 (986)
T 2iw3_A 18 ELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV 94 (986)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCH-HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH
T ss_pred HHHhhccccchhHHHHHHHHHHHHHhccccccccch-hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH
Confidence 3455666666788999999988876533 2222234 6999999999877666 88999999999554 568999999
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCh---hhhHHHHHHHhhcCC-chhHHHHHHHHHHHHhhCChhHHHH
Q 000200 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL---VDVVEDVKTSVKNKV-PLVRSLTLNWVTFCIETSSKAAVLK 441 (1871)
Q Consensus 366 ~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l---~~~~e~i~~al~~Kn-P~vk~etl~~L~r~l~~~~~~~~~~ 441 (1871)
.++|.+|+.+.||++.|++|+..|+++++.. ++. ..+++.+..+|++.. .|.|..++.++.+..+.. +..+..
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~ 171 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNA--VNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVAL 171 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHH--SCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHH
Confidence 9999999999999999999999999999986 454 456788899998764 999999999999999876 444556
Q ss_pred hhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhc
Q 000200 442 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEK 487 (1871)
Q Consensus 442 ~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~ 487 (1871)
.+..++|.+..++-|+.++|.++|.++|-.+-.++|.+.+.+++..
T Consensus 172 ~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~ 217 (986)
T 2iw3_A 172 RMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPS 217 (986)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHH
T ss_pred hccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHH
Confidence 6789999999999999999999999999999999998888888764
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.47 E-value=0.00065 Score=92.69 Aligned_cols=263 Identities=10% Similarity=0.091 Sum_probs=148.4
Q ss_pred hhhHHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCC--ccHHHHHHHHHHHHHHHhhhC-chhHhhhhcchHHHHH
Q 000200 732 PKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQS--SAAATRNATIKLLGALHKFVG-PDIKGFLADVKPALLS 807 (1871)
Q Consensus 732 PKv~~e~l~wl~~ai~eFG~~~~~-~K~li~~~k~~~l~~--sN~~VR~aAi~Ll~~ly~~~G-~~l~~~l~dlkpall~ 807 (1871)
|+|+..++.-+..+.++++-...+ +..++..+-.+ +.+ ....+|...+..+|.+...++ +....++..+=+.++.
T Consensus 557 ~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~-l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~ 635 (971)
T 2x1g_F 557 SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHAS-LNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFE 635 (971)
T ss_dssp SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-HHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-HcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 444444444444444443321111 13344444444 444 356888999999999988776 5566666665455555
Q ss_pred HHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccC
Q 000200 808 ALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887 (1871)
Q Consensus 808 ~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankr 887 (1871)
.++.-.+ . ... .++ +-...-+.++.+..++..-+..
T Consensus 636 ~l~~~~~-~---~~~--------------------------------~~~--------~~~~~~~~l~~L~~~~~~l~~~ 671 (971)
T 2x1g_F 636 ELQAICQ-A---DSK--------------------------------TPA--------ARIRTIFRLNMISTLFSSLNTD 671 (971)
T ss_dssp HHHHHHT-C--------------------------------------CHH--------HHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHh-c---CCC--------------------------------Chh--------hHHHHHHHHHHHHHHHhhcCCC
Confidence 5443211 1 000 000 0112334555555555432222
Q ss_pred CCCC------------CccchHHHHhhhccch--hHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHH
Q 000200 888 IQPA------------GTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMR 953 (1871)
Q Consensus 888 I~p~------------~~geL~~aLk~rl~Ds--Nk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR 953 (1871)
+.++ ...+++..+..-+.+. +..+...+..+++.++.++|..|.+|.-.+++.++..+....-
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~--- 748 (971)
T 2x1g_F 672 VDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC--- 748 (971)
T ss_dssp ------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---
T ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---
Confidence 1110 0245666666655432 4578899999999999999999999988888888888776432
Q ss_pred HHHHHHHHHHHHhccch--------hhhHH----HHHHHhc-----ccCCcchHHHHHHHHHHHhccCCC----Ccc-hh
Q 000200 954 ECTLTVLDAWLAAVHLD--------KMVPY----VTTALTD-----AKLGAEGRKDLFDWLSKQLTGLSG----FPD-AA 1011 (1871)
Q Consensus 954 ~aa~~alda~~~~~gl~--------~~~~~----i~~~L~~-----~~~~p~~r~e~l~wL~~~l~~~~~----~~~-~~ 1011 (1871)
.+++..+..++...|-+ .+++. +...|.. ...+|+.+.+.+.++.+.+...+. ++. +.
T Consensus 749 ~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~ 828 (971)
T 2x1g_F 749 APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYD 828 (971)
T ss_dssp HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHH
Confidence 46888888888877764 22221 1122221 123689999999999998877654 222 44
Q ss_pred hhhhHHhhhcCCCCHHHHHHHHHHHHHHHHh
Q 000200 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1871)
Q Consensus 1012 ~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1871)
.++.-+..+|.-...++.+++-.++..++..
T Consensus 829 ~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 829 RLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp HHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 4444455566545555667777788776665
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.43 E-value=0.0003 Score=94.08 Aligned_cols=497 Identities=12% Similarity=0.079 Sum_probs=272.6
Q ss_pred ChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc----
Q 000200 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---- 397 (1871)
Q Consensus 322 dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~---- 397 (1871)
.|..=+..|-..|.+.+..+...+++++..+.+. -.....+|.++.-+++..+.|++.+..+|-.++...
T Consensus 112 ~~~~~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~------~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~ 185 (780)
T 2z6g_A 112 QFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDA------ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH 185 (780)
T ss_dssp --------------CCSCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred cccccHHHHHHHhcCccHHHHHHHHHHHHhhhHH------HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHH
Confidence 3444455666666666766777777777655332 234778999999999999999999999999887530
Q ss_pred -CCChhhhHHHHHHHhhcC-CchhHHHHHHHHHHHHhhCChhHHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Q 000200 398 -CLNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1871)
Q Consensus 398 -~~~l~~~~e~i~~al~~K-nP~vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk 474 (1871)
......+++.+...|.+. ++.+|..++..|.. |.... .....+. ...+|.++.+|.+.++.||..|+.+|..|..
T Consensus 186 ~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~-Ls~~~-~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 263 (780)
T 2z6g_A 186 AIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHN-LSHHR-EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLL 263 (780)
T ss_dssp HHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHTSH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHH-HhCCc-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 011235778888888754 89999999988887 43332 1111121 3589999999999999999999999999886
Q ss_pred HhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCC
Q 000200 475 SVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPAS 554 (1871)
Q Consensus 475 ~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 554 (1871)
.-.+. +..+.+ . +
T Consensus 264 ~~~~~-------------~~~v~~---~-g-------------------------------------------------- 276 (780)
T 2z6g_A 264 HQEGA-------------KMAVRL---A-G-------------------------------------------------- 276 (780)
T ss_dssp HSTTH-------------HHHHHH---T-T--------------------------------------------------
T ss_pred CChhh-------------HHHHHH---c-C--------------------------------------------------
Confidence 53211 111110 0 0
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHh---
Q 000200 555 KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA--- 631 (1871)
Q Consensus 555 ~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~--- 631 (1871)
+ -+.++..|.+.+|+.|-.+...+..+...
T Consensus 277 ---------------------------------------~--------v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e 309 (780)
T 2z6g_A 277 ---------------------------------------G--------LQKMVALLNKTNVKFLAITTDCLQILAYGNQE 309 (780)
T ss_dssp ---------------------------------------H--------HHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred ---------------------------------------C--------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Confidence 0 00112222223333333333322211100
Q ss_pred ----hhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHH
Q 000200 632 ----VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLT 707 (1871)
Q Consensus 632 ----~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~ 707 (1871)
+-. ....+.|++.+... +.-.+......++..++. +. ..+.
T Consensus 310 ~~~~i~~-~~~i~~Lv~lL~~~-----~~~~~~~~a~~aL~~Ls~-~~---------------------~~~~------- 354 (780)
T 2z6g_A 310 SKLIILA-SGGPQALVNIMRTY-----TYEKLLWTTSRVLKVLSV-CS---------------------SNKP------- 354 (780)
T ss_dssp HHHHHHT-TTHHHHHHHHHTTC-----CCHHHHHHHHHHHHHHHT-ST---------------------THHH-------
T ss_pred HHHHHHH-cCCHHHHHHHHhcC-----CHHHHHHHHHHHHHHhhc-Ch---------------------HHHH-------
Confidence 000 12245566655311 122222333444443332 10 0000
Q ss_pred HHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHH
Q 000200 708 TFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (1871)
Q Consensus 708 ~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly 787 (1871)
.+.+. -++..++..+ .+.++.++..++..+..+..... .......++..+... |.+.|+.||..|...|+.+-
T Consensus 355 ~i~~~----g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~i~~Lv~l-L~~~d~~vr~~A~~aL~~L~ 427 (780)
T 2z6g_A 355 AIVEA----GGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAAT-KQEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLT 427 (780)
T ss_dssp HHHHT----THHHHHGGGT-TCSCHHHHHHHHHHHHHHHTTCT-TCSCCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHh----chHHHHHHHH-cCCchHHHHHHHHHHHHHhccch-hhhhhhhHHHHHHHH-HcCCCHHHHHHHHHHHHHHH
Confidence 00110 1233344433 34567777777666655554332 223456788888888 99999999999999998764
Q ss_pred hhhCchhHhhh--hcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCC-
Q 000200 788 KFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES- 864 (1871)
Q Consensus 788 ~~~G~~l~~~l--~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d- 864 (1871)
.. .+..+..+ .+.=| .|+.-+.+
T Consensus 428 ~~-~~~~~~~i~~~g~i~-----------------------------------------------------~Lv~lL~~~ 453 (780)
T 2z6g_A 428 CN-NYKNKMMVCQVGGIE-----------------------------------------------------ALVRTVLRA 453 (780)
T ss_dssp SS-CHHHHHHHHTTTHHH-----------------------------------------------------HHHHHHHHH
T ss_pred hC-CHHHHHHHHHCCCHH-----------------------------------------------------HHHHHHHcc
Confidence 31 11122111 11112 23333332
Q ss_pred CCh-HHHHHHHHHHHHHHHHc------ccCCCCCCccchHHHHhhhccchhH-hHHHHHHHHHHHHHHhcChhHHhhh--
Q 000200 865 PDW-KVRLESIEAVNKILEEA------NKRIQPAGTGELFGGLRGRLYDSNK-NLVMATLITLGAVASAMGPAVEKSS-- 934 (1871)
Q Consensus 865 ~~W-K~RkEaLe~v~~il~~a------nkrI~p~~~geL~~aLk~rl~DsNk-~lv~~al~ii~~lA~amG~~~~k~~-- 934 (1871)
.+| .+|..|+..|..|.... ...+.. ...+..|-..|.+.+. .++..|+.+++.|+. ++......
T Consensus 454 ~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~---~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~ 528 (780)
T 2z6g_A 454 GDREDITEPAICALRHLTSRHQDAEMAQNAVRL---HYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL--CPANHAPLRE 528 (780)
T ss_dssp TTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHH---TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH---cCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHH
Confidence 234 67777777777664210 001111 1235667677766664 888999999999984 55444322
Q ss_pred hhhhHHHHHHhccCc----------------------hhHHHHHHHHHHHHHHh------ccchhhhHHHHHHHhcccCC
Q 000200 935 KGVLSDILKCLGDNK----------------------KHMRECTLTVLDAWLAA------VHLDKMVPYVTTALTDAKLG 986 (1871)
Q Consensus 935 k~l~~~il~~l~D~K----------------------~~vR~aa~~alda~~~~------~gl~~~~~~i~~~L~~~~~~ 986 (1871)
..++|.++..|.+.. ..++.++..||...... ..-...++.+...|.++ +
T Consensus 529 ~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~--~ 606 (780)
T 2z6g_A 529 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSP--I 606 (780)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCS--C
T ss_pred CCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCC--C
Confidence 257788888886643 34566666666653210 10123456667777754 5
Q ss_pred cchHHHHHHHHHHHhccCCCC-cch--hhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcC
Q 000200 987 AEGRKDLFDWLSKQLTGLSGF-PDA--AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1871)
Q Consensus 987 p~~r~e~l~wL~~~l~~~~~~-~~~--~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G 1044 (1871)
+..|.....-|..-. ..+.. ..+ ...+.++...+.|++.+||..|..+|..+...-.
T Consensus 607 ~~v~~~a~~aL~~L~-~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 607 ENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHHHHHHHH-TSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHh-cCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 667777666555332 21111 011 1245668888999999999999999998877554
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00036 Score=90.82 Aligned_cols=83 Identities=12% Similarity=0.034 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHH
Q 000200 384 ESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRD 463 (1871)
Q Consensus 384 eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~ 463 (1871)
+++...+-.+. .| .......-++...+.+++...|.-...++...+...+ . ++--.+..+.+-|+|+++-||-
T Consensus 53 ~~l~kli~~~~-~G-~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~-e----~~~l~in~l~kDL~~~n~~vr~ 125 (618)
T 1w63_A 53 RNVAKLLYMHM-LG-YPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQ-D----VHLLMTNCIKNDLNHSTQFVQG 125 (618)
T ss_dssp HHHHHHHHHHH-TT-CCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCH-H----HHHHHHHHHHHHHSCSSSHHHH
T ss_pred HHHHHHHHHHH-cC-CCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCc-H----HHHHHHHHHHHhcCCCCHhHHH
Confidence 44555554443 22 3455566778888889999999888888777775432 1 1234678888999999999998
Q ss_pred HHHHHHHHHH
Q 000200 464 AAFSVLAAIA 473 (1871)
Q Consensus 464 aA~~~l~~lm 473 (1871)
.|..+|+.+.
T Consensus 126 lAL~~L~~i~ 135 (618)
T 1w63_A 126 LALCTLGCMG 135 (618)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 8888888764
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=98.31 E-value=0.045 Score=74.43 Aligned_cols=277 Identities=14% Similarity=0.173 Sum_probs=167.2
Q ss_pred hhhHHHHHHHHHHHhhchH---hHHHHHHHhhh---hcCChhhHHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCC
Q 000200 698 TRAHAMKCLTTFSEAVGPG---FIFERLYKIMK---DHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQS 770 (1871)
Q Consensus 698 ~r~~a~e~L~~~aE~~~~~---~V~~~l~~~~~---~~KnPKv~~e~l~wl~~ai~eFG~~~~~-~K~li~~~k~~~l~~ 770 (1871)
.|..+.++|..+++..+.. ++++.+...+. .+.+++.+..++-+++.+.+...-..-+ +..++..+.. +.+
T Consensus 423 ~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~--l~~ 500 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR--ISI 500 (963)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG--SCC
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh--CCC
Confidence 3677888999999877632 33333333321 4568888888887777766543322111 2456665553 566
Q ss_pred ccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccc
Q 000200 771 SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDI 850 (1871)
Q Consensus 771 sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDI 850 (1871)
.+|.||..++.++|..-.|+++.- .++..
T Consensus 501 ~~~~vr~~~~~~l~~~~~~l~~~~-~~l~~-------------------------------------------------- 529 (963)
T 2x19_B 501 SNVQLADTVMFTIGALSEWLADHP-VMINS-------------------------------------------------- 529 (963)
T ss_dssp CSHHHHHHHHHHHHHTHHHHHHCH-HHHTT--------------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCH-HHHHH--------------------------------------------------
Confidence 799999999999999888775321 22211
Q ss_pred ccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc--chhHhHHHHHHHHHHHHHHhcC-
Q 000200 851 SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY--DSNKNLVMATLITLGAVASAMG- 927 (1871)
Q Consensus 851 s~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~--DsNk~lv~~al~ii~~lA~amG- 927 (1871)
+-+.++..|.+ -++|..|..++..++++..+.+.|-. .+|+..|-.-+. +.+.......+.+++.++.++|
T Consensus 530 ---vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~ 603 (963)
T 2x19_B 530 ---VLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQV 603 (963)
T ss_dssp ---THHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCH
T ss_pred ---HHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCH
Confidence 11234444443 36788899999999988767788875 888888877664 3455677888999999999998
Q ss_pred hhHHhhhhhhhHHHHHHhcc---C--chhHH---HHHHHHHHHHHHhccchhhhHHHHHHH--hcccCCcchHHHHHHHH
Q 000200 928 PAVEKSSKGVLSDILKCLGD---N--KKHMR---ECTLTVLDAWLAAVHLDKMVPYVTTAL--TDAKLGAEGRKDLFDWL 997 (1871)
Q Consensus 928 ~~~~k~~k~l~~~il~~l~D---~--K~~vR---~aa~~alda~~~~~gl~~~~~~i~~~L--~~~~~~p~~r~e~l~wL 997 (1871)
..+.+|...++++++..+.. + .+..+ ...+++|..++..++-..- ..+.+.- ...+ .|..+.......
T Consensus 604 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~ 681 (963)
T 2x19_B 604 EEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHH-EDDHEGPELRKLP-VPQGPNPVVVVL 681 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCC-C----------------CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcc-cccccccccccCC-CCCCCCchHHHH
Confidence 77889999999999888752 1 22233 3455666666666542100 0000000 0000 000011122222
Q ss_pred HHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHH
Q 000200 998 SKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQE 1046 (1871)
Q Consensus 998 ~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~ 1046 (1871)
.+ ..+.+.-++..-. .+.+|+..+..++..++..+|.+
T Consensus 682 ~~----------~~~~~~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~ 719 (963)
T 2x19_B 682 QQ----------VFQLIQKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDD 719 (963)
T ss_dssp HH----------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSSST
T ss_pred HH----------HHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHhhccc
Confidence 21 2222222332222 35689999999999998888854
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00036 Score=93.25 Aligned_cols=518 Identities=13% Similarity=0.077 Sum_probs=292.9
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccc-cchhhh
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFL 367 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~-~y~~~~ 367 (1871)
.+...|.+.....|..+++.+..+. ...+. ...+..|.+++.+.|..|...|+.+|+.|+..-..... .....+
T Consensus 119 ~lv~~L~~~~~~~r~~a~~~l~~~~-~~~i~----~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 119 TNVQRLAEPSQMLKHAVVNLINYQD-DAELA----TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp -------CCSCHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHhhh-HHHHH----hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 5888888888888888887765431 11221 34677777777788999999999999999975421110 012468
Q ss_pred HHHHHHHhccC-CHHHHHHHHHHHHHHHHhcC----CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHh
Q 000200 368 LPVLLEKLKEK-KPTVAESLTQTLQAMHKAGC----LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (1871)
Q Consensus 368 ~~~lLeklKEK-K~~V~eAl~~aLda~~~~~~----~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~ 442 (1871)
++.|++.|+.. .+.++..+..+|-.+..... +.-...++.+...|++.++.+|.+++..|........... ..+
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~-~~v 272 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK-MAV 272 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH-HHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH-HHH
Confidence 99999999854 78888888888877643200 0001356778889999999999999999988776543211 112
Q ss_pred h-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCC
Q 000200 443 H-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGG 521 (1871)
Q Consensus 443 ~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~ 521 (1871)
. ...++.++.+|.+.+..||..+..+|..+.. |.......+...+. -..+..++...
T Consensus 273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~--~~~e~~~~i~~~~~--i~~Lv~lL~~~------------------ 330 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQESKLIILASGG--PQALVNIMRTY------------------ 330 (780)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHHHHHHHHTTTH--HHHHHHHHTTC------------------
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--CChHHHHHHHHcCC--HHHHHHHHhcC------------------
Confidence 1 4589999999999999999999999885542 21111111100000 00111111000
Q ss_pred CCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhcc
Q 000200 522 SVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSL 601 (1871)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l 601 (1871)
+.+.....+.
T Consensus 331 --------------------------------------------------------------------~~~~~~~~a~-- 340 (780)
T 2z6g_A 331 --------------------------------------------------------------------TYEKLLWTTS-- 340 (780)
T ss_dssp --------------------------------------------------------------------CCHHHHHHHH--
T ss_pred --------------------------------------------------------------------CHHHHHHHHH--
Confidence 0011111110
Q ss_pred CcHhHHHhhhh-ccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCcc
Q 000200 602 IPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK 680 (1871)
Q Consensus 602 ~~~~i~~~L~s-~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~ 680 (1871)
.++..|.. ...+..+ ++. .....|+.++ .+.+..+....+.++..++.....+.
T Consensus 341 ---~aL~~Ls~~~~~~~~i---------~~~-----g~l~~Ll~lL------~~~~~~~~~~a~~~L~~L~~~~~~~~-- 395 (780)
T 2z6g_A 341 ---RVLKVLSVCSSNKPAI---------VEA-----GGMQALGLHL------TDPSQRLVQNCLWTLRNLSDAATKQE-- 395 (780)
T ss_dssp ---HHHHHHHTSTTHHHHH---------HHT-----THHHHHGGGT------TCSCHHHHHHHHHHHHHHHTTCTTCS--
T ss_pred ---HHHHHhhcChHHHHHH---------HHh-----chHHHHHHHH------cCCchHHHHHHHHHHHHHhccchhhh--
Confidence 11111111 1111111 000 1123333333 34466778888888888876543321
Q ss_pred chhhhccchhhccc--cchhhhHHHHHHHHHHHhhch-------HhHHHHHHHhhhhcCCh-hhHHHHHHHHHHHHHHhc
Q 000200 681 CVVLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKNP-KVLSEGILWMVSAVEDFG 750 (1871)
Q Consensus 681 ~~~~~l~~lveKlg--D~K~r~~a~e~L~~~aE~~~~-------~~V~~~l~~~~~~~KnP-Kv~~e~l~wl~~ai~eFG 750 (1871)
....+++.++.-+. |..++..+..+|..++..... .-++..++..+....++ .++..++..|..+....+
T Consensus 396 ~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~ 475 (780)
T 2z6g_A 396 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 475 (780)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSST
T ss_pred hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCc
Confidence 12345666665444 456888888888877653210 12456666666544444 888888877765532111
Q ss_pred cC-----ccchHhHHHHHhhhcCCCccH-HHHHHHHHHHHHHHhhhCchhHhhh--hcchHHHHHHHHHHHhcCCCCCCC
Q 000200 751 VS-----HLKLKDLIDFCKDTGLQSSAA-ATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTV 822 (1871)
Q Consensus 751 ~~-----~~~~K~li~~~k~~~l~~sN~-~VR~aAi~Ll~~ly~~~G~~l~~~l--~dlkpall~~ie~EF~K~~~~~~p 822 (1871)
-. .+--...++.+... |.+.+. .||.+|..+|+.+-. |+.-+..+ .+.=|.++..|...-..+..+..-
T Consensus 476 ~~~~~~~~v~~~~~l~~L~~l-L~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~ 552 (780)
T 2z6g_A 476 DAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 552 (780)
T ss_dssp THHHHHHHHHHTTCHHHHHHT-TSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHcCCHHHHHHH-hcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhh
Confidence 00 00011234555566 777774 999999999998874 55544444 345577777776543222100000
Q ss_pred CCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHH-cc-cCCCCCCccchHHHH
Q 000200 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEE-AN-KRIQPAGTGELFGGL 900 (1871)
Q Consensus 823 ~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~-an-krI~p~~~geL~~aL 900 (1871)
+ .+. -+ +.. +...-.+|..++..+..+... .| ..|.. ...+..|
T Consensus 553 a----------------l~n--q~---~~~----------~~~~~~v~~~a~~aL~~La~~~~~~~~l~~---~~~i~~L 598 (780)
T 2z6g_A 553 G----------------GTQ--QQ---FVE----------GVRMEEIVEACTGALHILARDIHNRIVIRG---LNTIPLF 598 (780)
T ss_dssp -----------------------C---CST----------TCCHHHHHHHHHHHHHHHTTSHHHHHHHHH---TCCHHHH
T ss_pred c----------------ccc--ch---hhc----------ccChHHHHHHHHHHHHHHhcChhhHHHHHH---CCcHHHH
Confidence 0 000 00 000 001122455566666554311 00 01211 2257778
Q ss_pred hhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhh--hhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc
Q 000200 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1871)
Q Consensus 901 k~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k--~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g 968 (1871)
...|.+.|.+++..|+.++..++. .+....... ..++.++..+.|....||..|..||..+.....
T Consensus 599 v~lL~~~~~~v~~~a~~aL~~L~~--~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 599 VQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 888889999999999999988863 244443322 367889999999999999999999999887654
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.6e-05 Score=88.29 Aligned_cols=186 Identities=18% Similarity=0.185 Sum_probs=136.8
Q ss_pred HhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCC
Q 000200 757 KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 836 (1871)
Q Consensus 757 K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~ 836 (1871)
...++.+... |.+.|+.||..|+..|+.+. . +
T Consensus 18 ~~~~~~L~~~-L~~~~~~vR~~A~~~L~~~~----~----------------------------~--------------- 49 (211)
T 3ltm_A 18 PEKVEMYIKN-LQDDSYYVRRAAAYALGKIG----D----------------------------E--------------- 49 (211)
T ss_dssp GGGHHHHHHH-TTCSSHHHHHHHHHHHHHHC----C----------------------------G---------------
T ss_pred HhHHHHHHHH-HcCCCHHHHHHHHHHHHHhC----C----------------------------c---------------
Confidence 4556666666 89999999999999887532 1 0
Q ss_pred CCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHH
Q 000200 837 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 916 (1871)
Q Consensus 837 ~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al 916 (1871)
...+.|+..+.|.+|.+|..|+..+..+-. .+.+..|...|.|.|..+...|+
T Consensus 50 ----------------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~ 102 (211)
T 3ltm_A 50 ----------------RAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAA 102 (211)
T ss_dssp ----------------GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHH
T ss_pred ----------------cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHH
Confidence 013457777888999999999998876531 45677788888999999998888
Q ss_pred HHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHH
Q 000200 917 ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDW 996 (1871)
Q Consensus 917 ~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~w 996 (1871)
..++.+.. ...++.++..|.|..+.||.++..+|..+ |-...++.+...|.++ ++.+|..+...
T Consensus 103 ~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~a 166 (211)
T 3ltm_A 103 VALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDE--DGWVRQSAADA 166 (211)
T ss_dssp HHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHH
T ss_pred HHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHcCC--CHHHHHHHHHH
Confidence 88877632 23568888899999999999999998776 4456677778888755 57888888887
Q ss_pred HHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 997 LSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 997 L~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
|.+. . ....+..+...|.|.++.||.+|..+|..+-.
T Consensus 167 L~~~-~-------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 167 LGEI-G-------GERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHH-C-------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred HHHh-C-------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 7753 1 12344456667889999999999998875533
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.1e-05 Score=87.31 Aligned_cols=179 Identities=18% Similarity=0.171 Sum_probs=137.8
Q ss_pred hhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000200 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1871)
Q Consensus 288 ~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~ 367 (1871)
+.+...+.+..|..|..|++.|..+.. .+.+..|...+.|.|..|...|+.+++.+.. ...
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~ 82 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERA 82 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCC---------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHH
Confidence 357788899999999999999887643 3567788888899999999999999988752 356
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhH
Q 000200 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1871)
Q Consensus 368 ~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~ 447 (1871)
++.+++.++|..+.||.++..+|-.+.. .+.++.+...+++.+|.||..++.-|.+.- . ...+
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~-------~~~~ 145 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEPLIKALKDEDWFVRIAAAFALGEIG----D-------ERAV 145 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----C-------GGGH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----C-------HHHH
Confidence 8999999999999999988887765522 356788889999999999999888887651 1 2357
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhc
Q 000200 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502 (1871)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~ 502 (1871)
+.+...++|.++.||.+|..+|+.+-.--.-..+..++.+=++.-|....+.+..
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 8899999999999999999999987321112334555555566555555665554
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.3e-05 Score=86.26 Aligned_cols=178 Identities=19% Similarity=0.178 Sum_probs=134.5
Q ss_pred hhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000200 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1871)
Q Consensus 288 ~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~ 367 (1871)
+.|.+.+.+..|..|..|++.|..+.. .+.+..|...+.|.|..|...|+.+++.+.. ...
T Consensus 17 ~~~i~~L~~~~~~vr~~A~~~L~~~~~---------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----------~~~ 77 (201)
T 3ltj_A 17 EMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERA 77 (201)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGG
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCC---------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHH
Confidence 468889999999999999999987642 2456777788889999999999999988742 256
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhH
Q 000200 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1871)
Q Consensus 368 ~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~ 447 (1871)
++.+++.+.|..+.||.++..+|-.+.. .+.++.+...+++.+|.||..++..|.+.-. ...+
T Consensus 78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~ 140 (201)
T 3ltj_A 78 VEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAV 140 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----------GGGH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------HHHH
Confidence 8999999999999999988888766532 3578888899999999999998888776421 2457
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHh
Q 000200 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (1871)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~ 501 (1871)
+.+...++|.++.||.+|..+|+.+-.--....+..++.+=++.-|....+.+.
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 889999999999999999999998721111122444444445544444444443
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=98.21 E-value=0.03 Score=76.16 Aligned_cols=347 Identities=11% Similarity=0.077 Sum_probs=210.2
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhcc-ccchhhhHHHHHHHHHHHhhc--hH---hHHHHHHHhhh
Q 000200 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERV-ADIKTRAHAMKCLTTFSEAVG--PG---FIFERLYKIMK 727 (1871)
Q Consensus 654 esNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKl-gD~K~r~~a~e~L~~~aE~~~--~~---~V~~~l~~~~~ 727 (1871)
..|.+.....+-++..+++.+..-.......+++.+..-. .++++|..+..++..|++-.. ++ .|+..++.++
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l- 538 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL- 538 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHT-
T ss_pred CCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh-
Confidence 4577777888888888887654322333333444322111 357799999999999998643 33 3455556554
Q ss_pred hcCChhhHHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCC--ccHHHHHHHHHHHHHHHhhhC-chhHhhhhcchH
Q 000200 728 DHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQS--SAAATRNATIKLLGALHKFVG-PDIKGFLADVKP 803 (1871)
Q Consensus 728 ~~KnPKv~~e~l~wl~~ai~eFG~~~~~-~K~li~~~k~~~l~~--sN~~VR~aAi~Ll~~ly~~~G-~~l~~~l~dlkp 803 (1871)
.+|+|+..|+.-+..+.++++-...+ +..++..+-.. +.+ .+..+|......+|.+-..+| +....+++.+=+
T Consensus 539 --~~~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~-l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~ 615 (963)
T 2x19_B 539 --GNPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDV-LMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLIS 615 (963)
T ss_dssp --TCGGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHH-HHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-hccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34999999999999999887754333 36777776665 654 467899999999999988887 566677765544
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000200 804 ALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEE 883 (1871)
Q Consensus 804 all~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ 883 (1871)
.+...++.-. +. +.. ++. -+.+...++.+..++..
T Consensus 616 ~l~~~l~~~~-~~----~~~--------------------------------~~~--------~~~~~~~l~~l~~i~~~ 650 (963)
T 2x19_B 616 PYIQQLEKLA-EE----IPN--------------------------------PSN--------KLAIVHILGLLSNLFTT 650 (963)
T ss_dssp HHHHHHHHHH-SS----CSC--------------------------------HHH--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hC----CCC--------------------------------HHH--------HHHHHHHHHHHHHHHHH
Confidence 4444444321 11 000 000 01122333333333332
Q ss_pred cccCCCCC---------------------CccchHHHHhhhcc-c-hhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHH
Q 000200 884 ANKRIQPA---------------------GTGELFGGLRGRLY-D-SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (1871)
Q Consensus 884 ankrI~p~---------------------~~geL~~aLk~rl~-D-sNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~ 940 (1871)
-..++... .+..+++.+..-+. + .|..+...++.+++.++..+|..|.+|.-.+++.
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~ 730 (963)
T 2x19_B 651 LDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEM 730 (963)
T ss_dssp CCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHH
T ss_pred cCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 11111100 01112222222221 1 2347888899999999999999998887777777
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHhccchh----hhHH----HHHH----Hh-cccCCcchHHHHHHHHHHHhccCCC-
Q 000200 941 ILKCLGDNKKHMRECTLTVLDAWLAAVHLDK----MVPY----VTTA----LT-DAKLGAEGRKDLFDWLSKQLTGLSG- 1006 (1871)
Q Consensus 941 il~~l~D~K~~vR~aa~~alda~~~~~gl~~----~~~~----i~~~----L~-~~~~~p~~r~e~l~wL~~~l~~~~~- 1006 (1871)
++..+.... -.+.+..+..+....|.+. .++. +... +. +....|+.|.+.+.+|...+..++.
T Consensus 731 l~~~~~~~~---~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~ 807 (963)
T 2x19_B 731 LGRMYSTIP---QASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDL 807 (963)
T ss_dssp HHHHHHHSC---CHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHcCC---ccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHH
Confidence 776665421 1256666777766444332 2222 2221 11 2223589999999999988876653
Q ss_pred ---Ccc-hhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcC-HHHHHHHh
Q 000200 1007 ---FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG-QETIEKNL 1052 (1871)
Q Consensus 1007 ---~~~-~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G-~~~~~~~~ 1052 (1871)
.+. ...++.-+..+|.+...+|-+++-..+..++...+ .+.+...+
T Consensus 808 ~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~ 858 (963)
T 2x19_B 808 FLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVV 858 (963)
T ss_dssp GGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHT
T ss_pred HcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 233 55566667778999999999999999999988765 33343333
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0021 Score=83.83 Aligned_cols=154 Identities=14% Similarity=0.125 Sum_probs=108.3
Q ss_pred CCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccc-chhhhHHHHHHHhccC-CHHHHHHHHHHHHHH
Q 000200 316 KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFLLPVLLEKLKEK-KPTVAESLTQTLQAM 393 (1871)
Q Consensus 316 pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~-y~~~~~~~lLeklKEK-K~~V~eAl~~aLda~ 393 (1871)
+++..|. +..|.+.+.|.|..+...|+.+|+.|+..-.....- ....+++.+++.|++. -+.++.++..+|-.+
T Consensus 9 ~~~~~g~----i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~L 84 (644)
T 2z6h_A 9 AELATRA----IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 84 (644)
T ss_dssp ---CTTT----HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hhhhhch----HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3444454 445555666889999999999999999875422111 1236789999999875 688888888888765
Q ss_pred HHhcC--CCh--hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHH
Q 000200 394 HKAGC--LNL--VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSV 468 (1871)
Q Consensus 394 ~~~~~--~~l--~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~ 468 (1871)
..... ..+ ...++.+...|++.++.++..++.-|........... ..+. ...+|.++.+|.+.++.+|.++..+
T Consensus 85 s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 163 (644)
T 2z6h_A 85 SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDC 163 (644)
T ss_dssp TTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH-HHHHHTTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred hcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH-HHHHHCCChHHHHHHHCcCCHHHHHHHHHH
Confidence 43200 000 1356778889999999999999999888876542211 1222 4589999999999999999999988
Q ss_pred HHHHHH
Q 000200 469 LAAIAK 474 (1871)
Q Consensus 469 l~~lmk 474 (1871)
|..+..
T Consensus 164 L~~La~ 169 (644)
T 2z6h_A 164 LQILAY 169 (644)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 887764
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=98.19 E-value=0.011 Score=74.27 Aligned_cols=146 Identities=13% Similarity=0.118 Sum_probs=104.0
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccc-chhhhHHHHHHHhccC-CHHHHHHHHHHHHHHHHhcCCC---
Q 000200 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAGCLN--- 400 (1871)
Q Consensus 326 L~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~-y~~~~~~~lLeklKEK-K~~V~eAl~~aLda~~~~~~~~--- 400 (1871)
.+..|-+.+.+.|..+...|+.++..|+..-...-.- .....++++++.++.. .+.++..+..+|-.+... ...
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~ 96 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLA 96 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHH
Confidence 4566666777889999999999999999754311100 1236789999999765 678888877777776431 000
Q ss_pred h--hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 401 L--VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 401 l--~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
+ ...++.+...+++.+|.++.+++..|.......+... ..+. ...+|.++..+.+.++.+|..+..+|..+.
T Consensus 97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH-HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH-HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1 1356778888999999999999998888776532211 1111 457999999999999999999988887553
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0085 Score=81.80 Aligned_cols=284 Identities=12% Similarity=0.134 Sum_probs=175.3
Q ss_pred hHHHHHHHhhhhc--CChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhC---
Q 000200 717 FIFERLYKIMKDH--KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG--- 791 (1871)
Q Consensus 717 ~V~~~l~~~~~~~--KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G--- 791 (1871)
|+..++++.+... .+|.++..++..+++.-+.|. .-.+..++..+-.+ |.+.|+.||.+|...+..+-....
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~l~~~l~~l~~~-L~d~~~~V~~~A~~Al~~~~~~~~~~~ 531 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQLIELMPILATF-LQTDEYVVYTYAAITIEKILTIRESNT 531 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTCBSCSS
T ss_pred HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHHHHHHHHHHHHH-hCCCChhHHHHHHHHHHHHHhcccccc
Confidence 3445666665333 289999999988887766552 12356777777775 999999999999998887654322
Q ss_pred --------chhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcC
Q 000200 792 --------PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE 863 (1871)
Q Consensus 792 --------~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~ 863 (1871)
..+.+|+. .+++.|-.-+++... .|.
T Consensus 532 ~~~~~~~~~~l~p~l~----~ll~~L~~ll~~~~~----~~~-------------------------------------- 565 (960)
T 1wa5_C 532 SPAFIFHKEDISNSTE----ILLKNLIALILKHGS----SPE-------------------------------------- 565 (960)
T ss_dssp SCCBSSCGGGTTTTHH----HHHHHHHHHHHTTCC----CHH--------------------------------------
T ss_pred cccccccHHHhhhhHH----HHHHHHHHHHHhccC----CCC--------------------------------------
Confidence 23445553 344444444443210 000
Q ss_pred CCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc-----chhHhHHHHHHHHHHHHHHhcCh-hHHhhhhhh
Q 000200 864 SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-----DSNKNLVMATLITLGAVASAMGP-AVEKSSKGV 937 (1871)
Q Consensus 864 d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~-----DsNk~lv~~al~ii~~lA~amG~-~~~k~~k~l 937 (1871)
+-++.-..++.+..++.....-+.|- +..|+..|..++. .+|+.+...++.+|+.++.+.|+ .+..+...+
T Consensus 566 --~~~~~e~l~~al~~vv~~~~~~~~p~-~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~ 642 (960)
T 1wa5_C 566 --KLAENEFLMRSIFRVLQTSEDSIQPL-FPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSM 642 (960)
T ss_dssp --HHTSCHHHHHHHHHHHHHHTTTTGGG-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred --cccccHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 00011256788888887666677774 3778777777763 35788888899999999999876 567888899
Q ss_pred hHHHHHHhccCchhHHHHHHHHHHHHHHhc-cchhhhHHHHHHHhcccC--CcchHHHHHHHHHHHhccCCC-Ccchhhh
Q 000200 938 LSDILKCLGDNKKHMRECTLTVLDAWLAAV-HLDKMVPYVTTALTDAKL--GAEGRKDLFDWLSKQLTGLSG-FPDAAHL 1013 (1871)
Q Consensus 938 ~~~il~~l~D~K~~vR~aa~~alda~~~~~-gl~~~~~~i~~~L~~~~~--~p~~r~e~l~wL~~~l~~~~~-~~~~~~~ 1013 (1871)
+|.+...|......++..+.+.+....... ++.+.+..+...|-++.. ++.--..+...|...+..... -.....+
T Consensus 643 ~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 722 (960)
T 1wa5_C 643 MPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPV 722 (960)
T ss_dssp HHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSCSHHH
T ss_pred HHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCCCchhHHHHHHHHHHhChHHHHHHHHH
Confidence 999999998777778888888888777664 333333333333321110 011112344444333322111 0001222
Q ss_pred hhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhc
Q 000200 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKD 1054 (1871)
Q Consensus 1014 ~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~ 1054 (1871)
+.-+-.++.+++.+ ..|..+++.++.++|.+.+.+.+..
T Consensus 723 l~~~~~~~~~~~~~--~~a~~ll~~i~~~~~~~~~~~yl~~ 761 (960)
T 1wa5_C 723 LGIFQRLIASKAYE--VHGFDLLEHIMLLIDMNRLRPYIKQ 761 (960)
T ss_dssp HHHHHHHHTCTTTH--HHHHHHHHHHHHHSCHHHHGGGHHH
T ss_pred HHHHHHHhCCCccc--chHHHHHHHHHHHCCHHHHHHHHHH
Confidence 22233466777744 7888999999999998876666543
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.08 E-value=5.2e-05 Score=83.44 Aligned_cols=182 Identities=20% Similarity=0.172 Sum_probs=133.3
Q ss_pred CCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHh
Q 000200 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 932 (1871)
Q Consensus 853 kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k 932 (1871)
...+.+++.++|++|.+|..|++.+..+-. .+.+..|...|.|.|..+...|+..++.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 346788999999999999999999975431 3567788888899999999999988877632
Q ss_pred hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhh
Q 000200 933 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012 (1871)
Q Consensus 933 ~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~ 1012 (1871)
...++.++..|.|..+.||.+++.+|..+ |-...++.+...|.++ ++..|..+...|.+. . ...
T Consensus 75 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~-~-------~~~ 138 (201)
T 3ltj_A 75 --ERAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDE--DWFVRIAAAFALGEI-G-------DER 138 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH-T-------CGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHcCC--CHHHHHHHHHHHHHh-C-------CHH
Confidence 24578899999999999999999999875 4455778888888765 688899888887653 1 123
Q ss_pred hhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHh
Q 000200 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKL 1069 (1871)
Q Consensus 1013 ~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~k 1069 (1871)
.+..+...|.|.++.||..|..+|+.+-..-..+.+...+++=.+..+....+.|.+
T Consensus 139 ~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 139 AVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 555678889999999999999999877221122233333444344444444444444
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00012 Score=95.38 Aligned_cols=397 Identities=14% Similarity=0.120 Sum_probs=229.7
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchh
Q 000200 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (1871)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~ 683 (1871)
.++.+.|.+.+=..|.+++..+.-..-...+.....--+++.+. .+|+..=+.+.=.+..++.. ..-.+-
T Consensus 37 ~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~------s~~~~~Krl~Yl~~~~~~~~----~~e~~~ 106 (618)
T 1w63_A 37 AAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIA------SQKFTDKRIGYLGAMLLLDE----RQDVHL 106 (618)
T ss_dssp HHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHH------SSSHHHHHHHHHHHHHHCCC----CHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHc------CCchHHHHHHHHHHHHHhCC----CcHHHH
Confidence 45556777666666777777776443222111111222334433 45555444444444333321 122234
Q ss_pred hhccchhhccccc--hhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHH
Q 000200 684 LCLLGISERVADI--KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID 761 (1871)
Q Consensus 684 ~~l~~lveKlgD~--K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~ 761 (1871)
++++.+..-+.|. -+|..|-.+|..+....-.+.++..+.+. ..+.||-|+..++..+..+..... .. +..+++
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~-L~~~~~~VRk~A~~al~~l~~~~p-~~--v~~~~~ 182 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKL-LKTSNSYLRKKAALCAVHVIRKVP-EL--MEMFLP 182 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHSCCHHHHHHHHHHHHHHHHHCG-GG--GGGGGG
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHCh-HH--HHHHHH
Confidence 5666666555553 35666655555554332233456666666 478999999999999999987543 22 347788
Q ss_pred HHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcC-C----CCCCCCCccccccccccCC
Q 000200 762 FCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN-P----FEGTVVPKKTVRASESTSS 836 (1871)
Q Consensus 762 ~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~-~----~~~~p~p~R~~r~~~~~~~ 836 (1871)
.+..+ |.+.|+.|+.+|+.+|+.+...- +.+...+..+=|.+...|..-...- . ..+-+.|--++.--.--
T Consensus 183 ~l~~l-L~D~d~~V~~~Al~~L~~i~~~~-~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L-- 258 (618)
T 1w63_A 183 ATKNL-LNEKNHGVLHTSVVLLTEMCERS-PDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLL-- 258 (618)
T ss_dssp GTTTS-TTCCCHHHHHHHHHHHHHHCCSH-HHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHH--
T ss_pred HHHHH-hCCCCHhHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHH--
Confidence 88887 99999999999999999986532 2233344455566666655432210 0 00000000000000000
Q ss_pred CCCCCCCCCCccc--cccCCcHHHHhhc-------CCCChHHHHHHHHHHHHHHHHcccCCCCCC--ccchHHHHhhhcc
Q 000200 837 VSSGGSDGLPRED--ISGKFTPTLVKSL-------ESPDWKVRLESIEAVNKILEEANKRIQPAG--TGELFGGLRGRLY 905 (1871)
Q Consensus 837 ~~~~~~d~lprvD--Is~kit~~l~~~l-------~d~~WK~RkEaLe~v~~il~~ankrI~p~~--~geL~~aLk~rl~ 905 (1871)
..+.+.| ...++- +++..+ ...+--+..|+...+ +. +.+.. .......|..-|.
T Consensus 259 ------~~l~~~~~~~~~~~~-~~L~~l~~~~~~~~~~~~aV~~ea~~~i---~~-----l~~~~~l~~~a~~~L~~~L~ 323 (618)
T 1w63_A 259 ------RILGRNDDDSSEAMN-DILAQVATNTETSKNVGNAILYETVLTI---MD-----IKSESGLRVLAINILGRFLL 323 (618)
T ss_dssp ------HHHTTTCHHHHHTTH-HHHHHHHHTSCCSSTHHHHHHHHHHHHH---HH-----SCCCHHHHHHHHHHHHHHHT
T ss_pred ------HHhCCCCHHHHHHHH-HHHHHHHhccccccchHHHHHHHHHHHH---Hh-----cCCCHHHHHHHHHHHHHHHh
Confidence 0000000 111111 122221 122334555555444 32 22211 1123456666678
Q ss_pred chhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccC
Q 000200 906 DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKL 985 (1871)
Q Consensus 906 DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~ 985 (1871)
+++.++.-.||..++.++..-...|.+ ..+.++.+|.|.-..||..++++|...+....++.+++.+.+++.+.
T Consensus 324 ~~d~~vr~~aL~~L~~i~~~~p~~~~~----~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~-- 397 (618)
T 1w63_A 324 NNDKNIRYVALTSLLKTVQTDHNAVQR----HRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSC-- 397 (618)
T ss_dssp CSSTTTHHHHHHHHHHHHHHHHHHHGG----GHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHC--
T ss_pred CCCCchHHHHHHHHHHHHhhCHHHHHH----HHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhC--
Confidence 888899999999999999764433433 45688999999999999999999999999988999999999999854
Q ss_pred CcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 986 GAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 986 ~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
+++.|.++..+|.+.-.... ++....+.-++..|.+....|+..+-.++-.++.
T Consensus 398 d~e~r~~~v~~I~~la~k~~--~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~ 451 (618)
T 1w63_A 398 EPEFKADCASGIFLAAEKYA--PSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLIT 451 (618)
T ss_dssp CHHHHHHHHHHHHHHHHSSC--CCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 57899999999987765543 2333334446666666665566544444444444
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0057 Score=83.43 Aligned_cols=237 Identities=11% Similarity=0.161 Sum_probs=142.8
Q ss_pred cCCCccchHHHHHHHHHHHHHHHHhcCC------------CCccchhhhccchhhccc----------c-------chhh
Q 000200 649 LPGWSEKNVQVQQQVIEVINYLAATATK------------FPKKCVVLCLLGISERVA----------D-------IKTR 699 (1871)
Q Consensus 649 ~PgwkesNfqV~~~~leil~~la~~~~~------------fs~~~~~~~l~~lveKlg----------D-------~K~r 699 (1871)
.||+...+-.|....++....+++.... .-+..+..+++.++.|+. | .-.|
T Consensus 359 ~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R 438 (971)
T 2x1g_F 359 KPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYR 438 (971)
T ss_dssp CSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHH
T ss_pred CCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHH
Confidence 5776655666677777766665542100 012233344455555541 1 1356
Q ss_pred hHHHHHHHHHHHhhchHhHHHHHHHhhh---hc-----CChhhHHHHHHHHHHHHHHhccCc-cchHhHHHHHhhhcCC-
Q 000200 700 AHAMKCLTTFSEAVGPGFIFERLYKIMK---DH-----KNPKVLSEGILWMVSAVEDFGVSH-LKLKDLIDFCKDTGLQ- 769 (1871)
Q Consensus 700 ~~a~e~L~~~aE~~~~~~V~~~l~~~~~---~~-----KnPKv~~e~l~wl~~ai~eFG~~~-~~~K~li~~~k~~~l~- 769 (1871)
..+.++|..++...+ +.++..++..+. .+ .+++.+..++-.+..+.+...-.. -.+..++..+.. |.
T Consensus 439 ~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~--l~~ 515 (971)
T 2x1g_F 439 QDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAE--IPY 515 (971)
T ss_dssp HHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHH--SCT
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHh--cCc
Confidence 788899999998776 444444443321 22 688888888877777654333211 123456665554 44
Q ss_pred -CccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcc
Q 000200 770 -SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPRE 848 (1871)
Q Consensus 770 -~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprv 848 (1871)
+.+|.||..|+.++|.+..|+++.- .|+..+=|.++..++
T Consensus 516 ~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l~-------------------------------------- 556 (971)
T 2x1g_F 516 EKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGLN-------------------------------------- 556 (971)
T ss_dssp TTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHHH--------------------------------------
T ss_pred cccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhC--------------------------------------
Confidence 3599999999999999999887532 344333333333331
Q ss_pred ccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccc--hhHhHHHHHHHHHHHHHHhc
Q 000200 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLVMATLITLGAVASAM 926 (1871)
Q Consensus 849 DIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~D--sNk~lv~~al~ii~~lA~am 926 (1871)
.+++..|-.++..++++....|.|-. .+|+..|-.-+.. ........++.+++.++.++
T Consensus 557 ------------------~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 557 ------------------SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp ------------------SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred ------------------hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 22355566666677765545555553 6677766665543 33567778889999999988
Q ss_pred C-hhHHhhhhhhhHHHHHHhc
Q 000200 927 G-PAVEKSSKGVLSDILKCLG 946 (1871)
Q Consensus 927 G-~~~~k~~k~l~~~il~~l~ 946 (1871)
+ ..+.+|...++++++..+.
T Consensus 618 ~~~~~~~~~~~ll~~l~~~l~ 638 (971)
T 2x1g_F 618 RPEEIPKYLDIIVSPCFEELQ 638 (971)
T ss_dssp CTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 7 5677888888888887665
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.1 Score=71.13 Aligned_cols=283 Identities=9% Similarity=0.048 Sum_probs=156.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccc--hhhhHHHHHHHHHHHhhc-------------h----H
Q 000200 656 NVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVG-------------P----G 716 (1871)
Q Consensus 656 NfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~--K~r~~a~e~L~~~aE~~~-------------~----~ 716 (1871)
+..|....+.++..+++. +.+.....+++.++..+.|. .++..|..+|..|+|... . .
T Consensus 471 ~p~vr~~a~~~lg~~~~~---~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~ 547 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQ---LTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE 547 (960)
T ss_dssp CHHHHHHHHHHHHHTGGG---SCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred CceehHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHH
Confidence 888888888888877663 34455666778888877774 478999999999998421 1 2
Q ss_pred hHHHHHHHhhhhcCC---hh--hHHHHHHHHHHHHHHhccCccc-hHhHHHHH----hhhcCCCccHHHHHHHHHHHHHH
Q 000200 717 FIFERLYKIMKDHKN---PK--VLSEGILWMVSAVEDFGVSHLK-LKDLIDFC----KDTGLQSSAAATRNATIKLLGAL 786 (1871)
Q Consensus 717 ~V~~~l~~~~~~~Kn---PK--v~~e~l~wl~~ai~eFG~~~~~-~K~li~~~----k~~~l~~sN~~VR~aAi~Ll~~l 786 (1871)
-+++.++..+ +.-+ ++ .....+..|..++..++-...+ ...++..+ ...+=...|+..+...+.+++.+
T Consensus 548 ~ll~~L~~ll-~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l 626 (960)
T 1wa5_C 548 ILLKNLIALI-LKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAI 626 (960)
T ss_dssp HHHHHHHHHH-HTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 3344444433 2211 33 3445666677777766644333 23344333 33211346889998899999999
Q ss_pred HhhhCchh-HhhhhcchHHHHHHHHHHHhcCCCCCCCCCc---cccccccccCCCCCCCCCCCCccccccCCcHHHH--h
Q 000200 787 HKFVGPDI-KGFLADVKPALLSALDAEYEKNPFEGTVVPK---KTVRASESTSSVSSGGSDGLPREDISGKFTPTLV--K 860 (1871)
Q Consensus 787 y~~~G~~l-~~~l~dlkpall~~ie~EF~K~~~~~~p~p~---R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~--~ 860 (1871)
-+..|+.. ..+.+.+=|.+...++..-... -+..-. .-++.. +.++. ...++-+-++ +
T Consensus 627 ~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~---~~~~~~i~~~l~~~~-----------~~~~~--~~~~~~~~l~~~~ 690 (960)
T 1wa5_C 627 LNYTQRQNLPLLVDSMMPTFLTVFSEDIQEF---IPYVFQIIAFVVEQS-----------ATIPE--SIKPLAQPLLAPN 690 (960)
T ss_dssp HHTSCGGGHHHHHHHHHHHHHHHHHTTCTTT---HHHHHHHHHHHHHHC-----------SSCCT--TTGGGHHHHTSGG
T ss_pred HhcCCcchHHHHHHHHHHHHHHHHHhhhHhh---HHHHHHHHHHHHHhc-----------cCCCH--HHHHHHHHHcCHH
Confidence 99877653 3444555566555554210000 000000 000000 00110 0011111111 1
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChh-HHhhhhhhhH
Q 000200 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLS 939 (1871)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~-~~k~~k~l~~ 939 (1871)
-++...|= -..+..+..++......|-. ...++..+.+.+.+.+ .-..++.+++.++..+|.. |.+|...+++
T Consensus 691 ~~~~~~~~--~~~~~~L~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~--~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~ 764 (960)
T 1wa5_C 691 VWELKGNI--PAVTRLLKSFIKTDSSIFPD--LVPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMNRLRPYIKQIAV 764 (960)
T ss_dssp GGCCTTTH--HHHHHHHHHHHHHHGGGCSC--SHHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHHHHGGGHHHHHH
T ss_pred HhcCCCCc--hhHHHHHHHHHHhChHHHHH--HHHHHHHHHHHhCCCc--ccchHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 11122221 23445555555432222222 1345555555554433 2378999999999999999 9999999999
Q ss_pred HHHHHhccCc-hhHHHHHHHHHHHHH
Q 000200 940 DILKCLGDNK-KHMRECTLTVLDAWL 964 (1871)
Q Consensus 940 ~il~~l~D~K-~~vR~aa~~alda~~ 964 (1871)
.++..|...| ..+|.+.+..+...+
T Consensus 765 ~l~~~l~~~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 765 LLLQRLQNSKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp HHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCcHhHHHHHHHHHHHHH
Confidence 9999997765 445544444444443
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00021 Score=82.69 Aligned_cols=229 Identities=15% Similarity=0.083 Sum_probs=127.6
Q ss_pred ccchhhcccc--chhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHH
Q 000200 686 LLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC 763 (1871)
Q Consensus 686 l~~lveKlgD--~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~ 763 (1871)
++.++.-+.| ..+|..|..+|..+. ..-++..+...+ ++.+|.++..++..|. .+|...-.+..+++.+
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~----~~~~~~~L~~~l-~d~~~~vR~~A~~aL~----~l~~~~~~~~~l~~~L 95 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG----GQDAVRLAIEFC-SDKNYIRRDIGAFILG----QIKICKKCEDNVFNIL 95 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC----CHHHHHHHHHHH-TCSSHHHHHHHHHHHH----HSCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC----CchHHHHHHHHH-cCCCHHHHHHHHHHHH----HhccccccchHHHHHH
Confidence 3444555554 456767666666554 234566676664 6889999988886554 4554333355677777
Q ss_pred hhhcCCCccHHHHHHHHHHHHHHHhhhC-------chhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCC
Q 000200 764 KDTGLQSSAAATRNATIKLLGALHKFVG-------PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 836 (1871)
Q Consensus 764 k~~~l~~sN~~VR~aAi~Ll~~ly~~~G-------~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~ 836 (1871)
...++.+.|+.||..|+..|+.+....+ +.|...+.|-.+......=.-+.+..
T Consensus 96 ~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~------------------- 156 (280)
T 1oyz_A 96 NNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIN------------------- 156 (280)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------------
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC-------------------
Confidence 6423789999999999999998764321 11111122221111111111111110
Q ss_pred CCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHH
Q 000200 837 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 916 (1871)
Q Consensus 837 ~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al 916 (1871)
+ ...-+.|+.-+.|++|.+|..|+..+..+- ... .+.+..|...+.|.|..+...|+
T Consensus 157 -----~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------~~~-~~~~~~L~~~l~d~~~~vR~~A~ 213 (280)
T 1oyz_A 157 -----D---------KATIPLLINLLKDPNGDVRNWAAFAININK--------YDN-SDIRDCFVEMLQDKNEEVRIEAI 213 (280)
T ss_dssp ----------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHT--------CCC-HHHHHHHHHHTTCSCHHHHHHHH
T ss_pred -----C---------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhc--------cCc-HHHHHHHHHHhcCCCHHHHHHHH
Confidence 0 012344566666777777777777665441 111 45566666666677766666666
Q ss_pred HHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000200 917 ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1871)
Q Consensus 917 ~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1871)
..++.+. ....++.++..|.|.. ||.++..+|..+ |-...++.+.+.|.
T Consensus 214 ~aL~~~~----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i----~~~~~~~~L~~~l~ 262 (280)
T 1oyz_A 214 IGLSYRK----------DKRVLSVLCDELKKNT--VYDDIIEAAGEL----GDKTLLPVLDTMLY 262 (280)
T ss_dssp HHHHHTT----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHH----CCGGGHHHHHHHHT
T ss_pred HHHHHhC----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhc----CchhhhHHHHHHHh
Confidence 6666553 1235566666666643 666666666554 33455565555555
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.027 Score=73.31 Aligned_cols=102 Identities=11% Similarity=0.071 Sum_probs=69.2
Q ss_pred hhhhHHHHHHHhc-cCC---HHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHH
Q 000200 364 SRFLLPVLLEKLK-EKK---PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1871)
Q Consensus 364 ~~~~~~~lLeklK-EKK---~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~ 439 (1871)
+..-+..+=..|+ +++ ..-++++...+-.+.. | .......-++...+.++++..|.-...++..++...+ .
T Consensus 33 i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~-G-~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~--e- 107 (621)
T 2vgl_A 33 INKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLL-G-HDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS--E- 107 (621)
T ss_dssp HHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHH-S-CCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH--H-
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc-C-CCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc--H-
Confidence 4444445555555 322 2244566665555443 3 3455566778889999999999988888887776442 1
Q ss_pred HHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000200 440 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1871)
Q Consensus 440 ~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1871)
++--++..+.+-++|+++-+|-.|..+|+.+
T Consensus 108 --~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i 138 (621)
T 2vgl_A 108 --LIRLINNAIKNDLASRNPTFMGLALHCIANV 138 (621)
T ss_dssp --HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhcCCCCHHHHHHHHHHhhcc
Confidence 1234577888999999999999999888876
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.015 Score=72.99 Aligned_cols=182 Identities=11% Similarity=0.014 Sum_probs=119.2
Q ss_pred HHHhhcC-CCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh-h
Q 000200 857 TLVKSLE-SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-S 934 (1871)
Q Consensus 857 ~l~~~l~-d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~-~ 934 (1871)
.++.-+. +.+|.+|..|+..+..+......+-.-.. ...+..|-..|.+.+..++..|+.++..++..-...-... .
T Consensus 63 ~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 141 (529)
T 1jdh_A 63 AIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK-SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL 141 (529)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 3555553 34899999999999887532111100000 2356677788888899999999999999998754332222 2
Q ss_pred hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc-------cchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCC
Q 000200 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-------HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007 (1871)
Q Consensus 935 k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~-------gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~ 1007 (1871)
...+|.++..|.+....+|..+..+|..|.... .-...++.+...|.+. +++.+.+....+...|...+..
T Consensus 142 ~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~--~~~~~~~~a~~~L~~l~~~~~~ 219 (529)
T 1jdh_A 142 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY--TYEKLLWTTSRVLKVLSVCSSN 219 (529)
T ss_dssp HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTSTTH
T ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhC--ChHHHHHHHHHHHHHHhcCccc
Confidence 468999999999999999999999998776421 1112355666667654 3444554444444455543321
Q ss_pred cc-h--hhhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 1008 PD-A--AHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 1008 ~~-~--~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
.. . ...+.+++..|.|.+.++|..+-.+|..+..
T Consensus 220 ~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 220 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhc
Confidence 11 1 2356678888999999999998887776654
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00087 Score=85.03 Aligned_cols=371 Identities=12% Similarity=0.131 Sum_probs=217.5
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhh--hccch-----hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC
Q 000200 604 ADTVGQLKSAVWKERLEAISSLRQQVEAV--QNLDQ-----SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1871)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~e~l~~~v~~~--~~~~~-----~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~ 676 (1871)
++++++|.|.|-..+++|...+.+.+... ++.+. ....||++|. .+.|..++....-+|..++...+.
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~-----~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHC-----CCCCHHHHHHHHHHHHHHhcCCHH
Confidence 67889999999999999999998877442 11111 1234555553 345778888888888888753211
Q ss_pred CCccch-hhhccchhhcccc--chhhhHHHHHHHHHHHhh--chHhH-----HHHHHHhhhhcCC----hhhHHHHHHHH
Q 000200 677 FPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAV--GPGFI-----FERLYKIMKDHKN----PKVLSEGILWM 742 (1871)
Q Consensus 677 fs~~~~-~~~l~~lveKlgD--~K~r~~a~e~L~~~aE~~--~~~~V-----~~~l~~~~~~~Kn----PKv~~e~l~wl 742 (1871)
..+..+ .-.++.++.-+.+ ..+++.|..+|..++.-. .-..| +..++..+..... ..++..++..+
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 111111 1245666665554 578899888888887421 11222 2334444322211 12222222222
Q ss_pred HHHHHHhccC---ccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCC
Q 000200 743 VSAVEDFGVS---HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFE 819 (1871)
Q Consensus 743 ~~ai~eFG~~---~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~ 819 (1871)
.... ..... ...+..++..+..+ |.+.++.||..|...|..+-. ++ +.....+ ..
T Consensus 215 ~nl~-~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~A~~aL~~L~~--~~----------~~~~~~i----~~---- 272 (510)
T 3ul1_B 215 SNLC-RNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTD--GP----------NERIEMV----VK---- 272 (510)
T ss_dssp HHHH-CCCSSCCCHHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTS--SC----------HHHHHHH----HT----
T ss_pred HHHh-hcccchhHHHHHHhHHHHHHHH-HhcCCHHHHHHHHHHHHHHhh--ch----------hhhHHHH----Hh----
Confidence 2222 21111 12346788888888 999999999999887765432 11 1110000 00
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcc----cCCCCCCccc
Q 000200 820 GTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEAN----KRIQPAGTGE 895 (1871)
Q Consensus 820 ~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~an----krI~p~~~ge 895 (1871)
..+-+.|+.-+.+.++.+|..++..+..|+.... ..+.. .
T Consensus 273 --------------------------------~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~----g 316 (510)
T 3ul1_B 273 --------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDA----G 316 (510)
T ss_dssp --------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT----T
T ss_pred --------------------------------cccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhc----c
Confidence 0123457777889999999999999998874210 01111 2
Q ss_pred hHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHh-hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccch----
Q 000200 896 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK-SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD---- 970 (1871)
Q Consensus 896 L~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k-~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~---- 970 (1871)
.+..|..-|.+.+..+...|+.+++.|+.+-...... .-..++|.++..|.+....+|..|..||..+......+
T Consensus 317 ~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~ 396 (510)
T 3ul1_B 317 ALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 396 (510)
T ss_dssp GGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 4556667778899999999999999997543221111 13468899999999999999999999987766543322
Q ss_pred ----hhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC---CCCcchhhh------hhHHhhhcCCCCHHHHHHHHHHHH
Q 000200 971 ----KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL---SGFPDAAHL------LKPASIAMTDKSSDVRKAAEACIV 1037 (1871)
Q Consensus 971 ----~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~---~~~~~~~~~------~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1871)
.+++.+...|.++ ++..+..++.-|..-+... .....+..+ +.-+-....+.|.+|++.|..+|.
T Consensus 397 L~~~g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie 474 (510)
T 3ul1_B 397 LVHCGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474 (510)
T ss_dssp HHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2344555556543 4666766666555433211 111111111 112333446778888887777765
Q ss_pred HH
Q 000200 1038 EI 1039 (1871)
Q Consensus 1038 ~~ 1039 (1871)
.+
T Consensus 475 ~y 476 (510)
T 3ul1_B 475 KY 476 (510)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00057 Score=79.09 Aligned_cols=162 Identities=15% Similarity=0.043 Sum_probs=122.0
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKK-LITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk-~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~ 367 (1871)
.+...+.+..|..|..|+..|..+... +....+++..|.. .+.|.|..|...|+.+++.++.+.. .+...+
T Consensus 58 ~L~~~l~d~~~~vR~~A~~aL~~l~~~----~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~ 129 (280)
T 1oyz_A 58 LAIEFCSDKNYIRRDIGAFILGQIKIC----KKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKI 129 (280)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHSCCC----TTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccc----cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHH
Confidence 466677888999999999888766432 2235567777775 4569999999999999999886542 345677
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhH
Q 000200 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1871)
Q Consensus 368 ~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~ 447 (1871)
++.++..++|..+.||.++..+|-.+. -.+.++.+...+++.+|.||..++.-|.+. .... ...+
T Consensus 130 ~~~L~~~l~d~~~~vR~~a~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~-~~~~--------~~~~ 194 (280)
T 1oyz_A 130 VEQSQITAFDKSTNVRRATAFAISVIN------DKATIPLLINLLKDPNGDVRNWAAFAININ-KYDN--------SDIR 194 (280)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHTC---------CCHHHHHHHHTCSSHHHHHHHHHHHHHH-TCCC--------HHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHhh-ccCc--------HHHH
Confidence 899999999999999987777765442 234678888899999999998888777653 2111 2456
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 448 PICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
+.+...++|.++.||..|..+|+.+-
T Consensus 195 ~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 195 DCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 88889999999999999999988753
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0029 Score=80.59 Aligned_cols=375 Identities=11% Similarity=0.142 Sum_probs=221.7
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhh--hccc-----hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC
Q 000200 604 ADTVGQLKSAVWKERLEAISSLRQQVEAV--QNLD-----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1871)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~e~l~~~v~~~--~~~~-----~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~ 676 (1871)
++++.++.+.|-..+++|+..+.+.+... ++.+ .....||++|. .+.|..++.....+|..++...+.
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~-----~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHc-----CCCCHHHHHHHHHHHHHHHcCCHH
Confidence 57789999999999999999998776442 1111 11234566653 356788888888888888753211
Q ss_pred CCccch-hhhccchhhccc--cchhhhHHHHHHHHHHHh--hchHhH-----HHHHHHhhhhcCChhhHHHHHHHHHHHH
Q 000200 677 FPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEA--VGPGFI-----FERLYKIMKDHKNPKVLSEGILWMVSAV 746 (1871)
Q Consensus 677 fs~~~~-~~~l~~lveKlg--D~K~r~~a~e~L~~~aE~--~~~~~V-----~~~l~~~~~~~KnPKv~~e~l~wl~~ai 746 (1871)
..+..+ .-+++.++.-+. +..++..|..+|..++.. ..-..| +..++..+............+...+.++
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 111111 124555555444 356888888888888742 112222 2234444322222222222222222233
Q ss_pred HHh---ccC---ccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCC
Q 000200 747 EDF---GVS---HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (1871)
Q Consensus 747 ~eF---G~~---~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~ 820 (1871)
..+ ... ...+..++..+-.+ |.+.++.|+..|...|..+-. ++. .....+- .
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~a~~aL~~l~~--~~~----------~~~~~v~----~----- 291 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTD--GPN----------ERIEMVV----K----- 291 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHHHS--SCH----------HHHHHHH----T-----
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHH-hcCCcHHHHHHHHHHHHHhhh--hhh----------hhHHHHH----h-----
Confidence 222 111 12346788888888 999999999998877754432 111 1100000 0
Q ss_pred CCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCC-ccchHHH
Q 000200 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGG 899 (1871)
Q Consensus 821 ~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~-~geL~~a 899 (1871)
..+-+.|+.-+.+.++.++..++..+..|+... ...+... -...+..
T Consensus 292 -------------------------------~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~i~~~g~l~~ 339 (529)
T 3tpo_A 292 -------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAV 339 (529)
T ss_dssp -------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGG
T ss_pred -------------------------------ccchHHHHHHhcCCChhHHHHHHHHHHHHHccc-hHHHHHHhhcccHHH
Confidence 002345777788999999999999999887421 1100000 0224566
Q ss_pred HhhhccchhHhHHHHHHHHHHHHHHhcChhHHh-hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccch--------
Q 000200 900 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEK-SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD-------- 970 (1871)
Q Consensus 900 Lk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k-~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~-------- 970 (1871)
|..-|.+.+..+...|+.+++.|+.+-...... .-..++|.++..|.+....+|..|..||..+......+
T Consensus 340 L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~ 419 (529)
T 3tpo_A 340 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHC 419 (529)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 777788889999999999999998643222221 13468999999999999999999999887776543322
Q ss_pred hhhHHHHHHHhcccCCcchHHHHHHHHHHHhcc---CCCCcchhhh------hhHHhhhcCCCCHHHHHHHHHHHHHH
Q 000200 971 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG---LSGFPDAAHL------LKPASIAMTDKSSDVRKAAEACIVEI 1039 (1871)
Q Consensus 971 ~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~---~~~~~~~~~~------~~p~~~~L~Dr~~dVRkaA~~~L~~~ 1039 (1871)
.+++.+.+.|.++ ++..+.-+|.-|..-|.. ......+..+ +.-+-....+.|.+|++.|..+|...
T Consensus 420 g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 420 GIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp TCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2344556666643 566777777666544421 1111111111 22233345688899999888887654
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00019 Score=79.04 Aligned_cols=183 Identities=13% Similarity=0.117 Sum_probs=135.4
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhc-CCCCCC-ChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccc-chh
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSR 365 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~-pKi~~~-dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~-y~~ 365 (1871)
-+..-+.+..|..|.+|+..|..+... +..... --...+..|-..+.+.|..+...|+.+++.|+.+-...-.. ...
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 95 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC
Confidence 467778999999999999999988742 211100 00136778888899889999999999999998643211111 124
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC-h-----hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHH
Q 000200 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1871)
Q Consensus 366 ~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~-l-----~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~ 439 (1871)
..+|.++.-+++..+.|+..+..+|-.+... ... . ..+++.+...|++.++.++..++..|.......+. ..
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~-~~ 173 (210)
T 4db6_A 96 GALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QK 173 (210)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH-HH
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH-HH
Confidence 5899999999999999999999998888642 100 1 13567788899999999999999888887764322 21
Q ss_pred HHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 440 LKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 440 ~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
..+. ...++.++.++.+.+++||+.|..+|..|.
T Consensus 174 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 2222 347899999999999999999999998763
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0012 Score=88.81 Aligned_cols=272 Identities=11% Similarity=0.201 Sum_probs=193.3
Q ss_pred HHHHHHhhhhcCChhhHHHHHHHHHHHHH-HhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCc--hhH
Q 000200 719 FERLYKIMKDHKNPKVLSEGILWMVSAVE-DFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP--DIK 795 (1871)
Q Consensus 719 ~~~l~~~~~~~KnPKv~~e~l~wl~~ai~-eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~--~l~ 795 (1871)
++.+++.+...+ +--+.++..-++..+. +-+...+. -.+++.+++. +.+-+.+ .+|..+++.|....|. .+.
T Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~k~~~--~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 16 LEELFQKLSVAT-ADNRHEIASEVASFLNGNIIEHDVP-EHFFGELAKG-IKDKKTA--ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSSSCC-HHHHHHHHHH-HTSHHHH--HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHHhhccccc-hhHHHHHHHHHHHHHhccccccccc-hhHHHHHHHH-HhccCCH--HHHHHHHHHHHHhcCCCCCcc
Confidence 334444444334 2223444445555555 33444455 3688888887 8887777 8888888888765543 333
Q ss_pred hhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHH
Q 000200 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (1871)
Q Consensus 796 ~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe 875 (1871)
.||= + +-+.+++.++||+=.+|..|-.
T Consensus 91 ~~~~----------------------------------------------------~-~~~~~~~~~~dk~~~v~~aa~~ 117 (986)
T 2iw3_A 91 PYIV----------------------------------------------------Q-LVPAICTNAGNKDKEIQSVASE 117 (986)
T ss_dssp HHHH----------------------------------------------------T-THHHHHHHTTCSSHHHHHHHHH
T ss_pred cchH----------------------------------------------------H-HHHHHHHHhcCCchHHHHHHHH
Confidence 3331 1 2345788889999999999999
Q ss_pred HHHHHHHHcccCCCCCCccchHHHHhhhccchhH-hHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHH
Q 000200 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDSNK-NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRE 954 (1871)
Q Consensus 876 ~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk-~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~ 954 (1871)
++.+|+.. +.|.-+--++++|-.-|..++| ....-||++++.++.....-+..+..-++|-+-++.-|-|+-|..
T Consensus 118 ~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~ 193 (986)
T 2iw3_A 118 TLISIVNA----VNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKA 193 (986)
T ss_dssp HHHHHHHH----SCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHh----CCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHH
Confidence 99999963 4454445677788888877765 678889999999998776667788889999999999999999999
Q ss_pred HHHHHHHHHHHhcc---chhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCC----cchhhhhhHHhh-hcCCCCH
Q 000200 955 CTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAHLLKPASI-AMTDKSS 1026 (1871)
Q Consensus 955 aa~~alda~~~~~g---l~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~----~~~~~~~~p~~~-~L~Dr~~ 1026 (1871)
+|..||.+.+..++ ++.++|.+.+++.+|.. =.|... .|....-. .....++.|++. +|.+|..
T Consensus 194 ~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~----~~~~~~----~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~ 265 (986)
T 2iw3_A 194 AATAAMTKATETVDNKDIERFIPSLIQCIADPTE----VPETVH----LLGATTFVAEVTPATLSIMVPLLSRGLNERET 265 (986)
T ss_dssp HHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTH----HHHHHH----HHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhh----hHHHHH----HhhcCeeEeeecchhHHHHHHHHHhhhccCcc
Confidence 99999999999886 56778888999987642 222222 33333211 224667888554 9999999
Q ss_pred HHHHHHHHHHHHHHHhc-CHHHHHHHhhccCchhH
Q 000200 1027 DVRKAAEACIVEILRAG-GQETIEKNLKDIQGPAL 1060 (1871)
Q Consensus 1027 dVRkaA~~~L~~~m~~~-G~~~~~~~~~~Lk~~~~ 1060 (1871)
.+...+.-++.-+.+.| .+..+..++.+|.|..+
T Consensus 266 ~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~ 300 (986)
T 2iw3_A 266 GIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLK 300 (986)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHH
T ss_pred hhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHH
Confidence 99999988888888888 45566777777765543
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0053 Score=79.96 Aligned_cols=396 Identities=14% Similarity=0.089 Sum_probs=206.8
Q ss_pred hhcCCCccccc--CcCchhHHHHHHHHHHHHhhhcCCCCchhhhhhhhchhhhcCCCCHHHHHHHHHHHHHHHHHcChhh
Q 000200 10 EAKKLPWEDRL--LHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADA 87 (1871)
Q Consensus 10 ~~~~lpl~erl--~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~DsN~~aqek~leal~~~l~~a~~~~ 87 (1871)
+.---++..-| .|.++-.|..|.-.+.+.|+.. +..-....+.+.+.+.+.|+|..++..++-++..........+
T Consensus 145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~--p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~ 222 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS--PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEF 222 (621)
T ss_dssp HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC--GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC--hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHH
Confidence 44556777788 9999999999999999999742 1110001355667788999999999999998887766542211
Q ss_pred hhhhhHHHHHHHHhhhcC--------------ChhhHHHHHHHHHHHHhhcchh---h---HHHHHHH---------Hhh
Q 000200 88 GRYAKEVCDAIAAKCLTG--------------RPKTVEKAQAVFMLWVELEAVD---V---FLDVMEK---------AIK 138 (1871)
Q Consensus 88 ~~~~~~~~~~lveK~L~~--------------r~~tk~~a~e~~l~~vE~e~~~---~---v~e~ll~---------~~~ 138 (1871)
.......+. +..+.+.. -+=.+-+.++++..|...+.++ . +++.++. .+.
T Consensus 223 ~~~~~~~~~-~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~ 301 (621)
T 2vgl_A 223 KTSVSLAVS-RLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQ 301 (621)
T ss_dssp TTHHHHHHH-HHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHH
T ss_pred HHHHHHHHH-HHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccccccc
Confidence 111111111 11122211 1223333444444444322221 2 2222332 234
Q ss_pred ccCc--hhHHHHHHHHHHHHHhhCCCccChhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHH
Q 000200 139 NKVA--KAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTM 216 (1871)
Q Consensus 139 ~K~P--Kvvaaai~~l~~~l~~FG~~vv~~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~lk~~L~~~Lkp~q 216 (1871)
|+|+ =|+-+|+.++..+ +..---.+..+..|-+++.++|+++|=-|..-+..+-.--+ + . ..+ ....+.
T Consensus 302 ~~n~~~aVl~ea~~~i~~l----~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~-~-~-~~~-~~~~~~- 372 (621)
T 2vgl_A 302 HSNAKNAVLFEAISLIIHH----DSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEF-S-H-EAV-KTHIET- 372 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTT-T-H-HHH-HTTHHH-
T ss_pred ccchHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccC-c-H-HHH-HHHHHH-
Confidence 5665 7777887777553 32100134466777788888899999887766665532211 1 0 111 111111
Q ss_pred HHHHHHHHHhcCCCCCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcc---cccCCCCchhhhhh
Q 000200 217 KKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPV---DILTPLEKSGFWEG 293 (1871)
Q Consensus 217 ~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~v---dIl~klpk~~f~~~ 293 (1871)
-|.-+... +-+.+|...-.- -|.++++. .|+. .+.+-
T Consensus 373 ------i~~~L~~d--~d~~Ir~~aL~l---------------------------L~~l~~~~Nv~~Iv~-----eL~~y 412 (621)
T 2vgl_A 373 ------VINALKTE--RDVSVRQRAVDL---------------------------LYAMCDRSNAQQIVA-----EMLSY 412 (621)
T ss_dssp ------HHHHHTTC--CCHHHHHHHHHH---------------------------HHHHCCHHHHHHHHH-----HHHHH
T ss_pred ------HHHHhccC--CCHhHHHHHHHH---------------------------HHHHcChhhHHHHHH-----HHHHH
Confidence 11111100 112333221100 01111111 1222 33344
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 373 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLe 373 (1871)
+.+..-.-|.+++..+..++. |+ +.++.-.+..|-+++.+.+-.++...+..+-.+... .+.+..|+ +..+++
T Consensus 413 l~~~d~~~~~~~v~~I~~la~--k~-~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~-~~~~~~~~---~~~l~~ 485 (621)
T 2vgl_A 413 LETADYSIREEIVLKVAILAE--KY-AVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVIN-RDDVQGYA---AKTVFE 485 (621)
T ss_dssp HHHCCHHHHHHHHHHHHHHHH--HH-CSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG-GCSCHHHH---HHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHH--hc-CCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhC-ChhHHHHH---HHHHHH
Confidence 444555567777776665542 11 245667777777777755545555555555555432 13344442 444566
Q ss_pred HhccCC--HHHHHHHHHHHHHHHHhcC-------CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhh
Q 000200 374 KLKEKK--PTVAESLTQTLQAMHKAGC-------LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (1871)
Q Consensus 374 klKEKK--~~V~eAl~~aLda~~~~~~-------~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k 444 (1871)
-+.|-. ..++ ..|+=-+.+|+. .+..++++.+...+..-++.+|.+++.-+.+.+...+. . ..
T Consensus 486 ~l~~~~~~~~li---~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--~---~~ 557 (621)
T 2vgl_A 486 ALQAPACHENLV---KVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--V---KA 557 (621)
T ss_dssp HHTSSSCCHHHH---HHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--G---HH
T ss_pred HHcCccchHHHH---HHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--H---HH
Confidence 666543 2222 122223333310 11235566676777788899999999999988765432 1 12
Q ss_pred hhHHHHHhhhC--CCCHHHHHHHHHHHHHH
Q 000200 445 DYVPICMECLN--DGTPEVRDAAFSVLAAI 472 (1871)
Q Consensus 445 ~~~~~l~k~l~--Ds~~~VR~aA~~~l~~l 472 (1871)
.+...+-.+.+ |.++|||+.|++.+.-+
T Consensus 558 ~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 558 TIQDVLRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHHHHHSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 23344444555 99999999999865544
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00043 Score=78.40 Aligned_cols=183 Identities=15% Similarity=0.150 Sum_probs=135.4
Q ss_pred hhhhhhhhccChHHHHHHHHHHHHhhhc--CCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccc-ch
Q 000200 288 SGFWEGVKATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SS 364 (1871)
Q Consensus 288 ~~f~~~l~s~KWkeRkEaLe~l~~l~~~--pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~-y~ 364 (1871)
+.|.+.|.+.....|.+|+..|..+++. +....---...+..|-+.+.+.+..+...|+.+|+.|+.+-...-.. ..
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4689999999999999999999765532 10000000136778888999888999999999999999753221111 12
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChh-------hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh
Q 000200 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV-------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1871)
Q Consensus 365 ~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~-------~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~ 437 (1871)
...+|.++.-+++..+.|++.+..+|-.+... .... ..++.+...|++.++.++..++.-|....... ..
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~ 171 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NE 171 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--CchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hH
Confidence 35899999999999999999999998887643 1111 35678888999999999998888777665433 22
Q ss_pred HHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 438 AVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 438 ~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
....+. ..++|.++..+.+.+++||..|+.+|+.+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 222222 458999999999999999999999999886
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.017 Score=75.28 Aligned_cols=383 Identities=13% Similarity=0.032 Sum_probs=203.8
Q ss_pred cccccCcCchhHHHHHHHHHHHHhhhcCCCCchhhh--hhhhchhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhh-hh
Q 000200 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIR--ELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY-AK 92 (1871)
Q Consensus 16 l~erl~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~--~~~~l~kk~v~DsN~~aqek~leal~~~l~~a~~~~~~~-~~ 92 (1871)
|-+-|.+.+...|..|..-|....... ++....+. ...+.+-+.+.+.|...+..++.+|..+....+...... ..
T Consensus 103 Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~ 181 (644)
T 2z6h_A 103 LVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 181 (644)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 345577888999999999998887532 11111111 122344466788899888888888866553221110111 12
Q ss_pred HHHHHHHHhhhcC-ChhhHHHHHHHHHHHHhhcc-h-----hhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccC
Q 000200 93 EVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEA-V-----DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP 165 (1871)
Q Consensus 93 ~~~~~lveK~L~~-r~~tk~~a~e~~l~~vE~e~-~-----~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~~vv~ 165 (1871)
+.++.|+.-.-++ ....+..+..++..+..... . ..++..|...+.+.++.++..++.+|..+... +.....
T Consensus 182 g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~-~~~~~~ 260 (644)
T 2z6h_A 182 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA-ATKQEG 260 (644)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGG-CTTCCS
T ss_pred CChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-chhhhh
Confidence 3455555532222 23334444444433332211 0 24667788888888999999999888887544 333445
Q ss_pred hhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhHHHhh-hchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHh
Q 000200 166 PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFE-KMRDTMKKELEVELVNVSGTARPTRKIRAEQDKE 244 (1871)
Q Consensus 166 ~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~lk~~L~~-~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~ 244 (1871)
.+.++..|-.++.+.|..||..+...+..|... ....+..+.+ +.=+..++-|...
T Consensus 261 ~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~--~~~~~~~v~~~g~v~~Lv~lL~~~--------------------- 317 (644)
T 2z6h_A 261 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN--NYKNKMMVCQVGGIEALVRTVLRA--------------------- 317 (644)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHHHH---------------------
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCCHHHHHHHHHcc---------------------
Confidence 678889999999999999999999888877542 1111122211 0111111111100
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhhc-CC---CCC
Q 000200 245 LGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KR---IAP 320 (1871)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~-pK---i~~ 320 (1871)
+.+|..|..++..|..|... +- ...
T Consensus 318 ---------------------------------------------------~~~~~v~~~a~~aL~nL~~~~~~~~~~q~ 346 (644)
T 2z6h_A 318 ---------------------------------------------------GDREDITEPAICALRHLTSRHQEAEMAQN 346 (644)
T ss_dssp ---------------------------------------------------TTCHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred ---------------------------------------------------CCcHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 00122222222222222110 00 000
Q ss_pred -CChHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccC--------------------
Q 000200 321 -GDFTEVCRTLKKLITDV-NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEK-------------------- 378 (1871)
Q Consensus 321 -~dy~eL~~~Lkk~l~Ds-Nv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEK-------------------- 378 (1871)
---...+..|.++|.+. +..++..|+.+++.|+.+-.....=.-..++|.+++-+++.
T Consensus 347 ~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~ 426 (644)
T 2z6h_A 347 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 426 (644)
T ss_dssp HHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCS
T ss_pred HHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccc
Confidence 00001233333333322 23444444444444443211100000123344444444432
Q ss_pred --CHHHHHHHHHHHHHHHHhc----CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhh--hhhHHHH
Q 000200 379 --KPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH--KDYVPIC 450 (1871)
Q Consensus 379 --K~~V~eAl~~aLda~~~~~----~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~--k~~~~~l 450 (1871)
-..|++++..||-.++... .+.-..+++.+...|.+.++.++..+...|..+... +. ....+ ...++.+
T Consensus 427 ~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~-~~~~i~~~g~l~~L 503 (644)
T 2z6h_A 427 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KE-AAEAIEAEGATAPL 503 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HH-HHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HH-HHHHHHHcCChhHH
Confidence 2456667777776554320 000113567788899999999999988888876542 11 11112 2367899
Q ss_pred HhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000200 451 MECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1871)
Q Consensus 451 ~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1871)
..++.+.+++||.+|..+|+.+...-+
T Consensus 504 ~~ll~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 504 TELLHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence 999999999999999999998765554
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=97.57 E-value=0.03 Score=71.17 Aligned_cols=373 Identities=14% Similarity=0.156 Sum_probs=220.0
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCC---hHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhcccccc-c
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGD---FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSG-S 363 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~d---y~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~-y 363 (1871)
++.+.+.|..=..+.+|+..+.++++..+-.+-+ =..++..|-.++. +.|..+...|+.||+.||.+-...-.. .
T Consensus 80 ~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv 159 (529)
T 3tpo_A 80 DIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVV 159 (529)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6888999999999999999999987643322210 0135667777886 778999999999999999874322111 1
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh------hHHHHHHHhhcCCc-hhHHHHHHHHHHHHh---h
Q 000200 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD------VVEDVKTSVKNKVP-LVRSLTLNWVTFCIE---T 433 (1871)
Q Consensus 364 ~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~------~~e~i~~al~~KnP-~vk~etl~~L~r~l~---~ 433 (1871)
-...+|.++.-++.....|++.+..||-.++.. +....+ .++.+...+..... ......+.....++. .
T Consensus 160 ~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~-~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 238 (529)
T 3tpo_A 160 DGGAIPAFISLLASPHAHISEQAVWALGNIAGA-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 238 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence 235789999999999999999999999888753 111111 24556666665442 222233323333332 2
Q ss_pred CC-hhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCC
Q 000200 434 SS-KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTS 512 (1871)
Q Consensus 434 ~~-~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~ 512 (1871)
.. ..........++|.+++++.+.+++|+..|+.+|..+... ++.. +...+.. +
T Consensus 239 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~-------------~~~~---~~~v~~~-g-------- 293 (529)
T 3tpo_A 239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG-------------PNER---IEMVVKK-G-------- 293 (529)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-------------CHHH---HHHHHTT-T--------
T ss_pred cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh-------------hhhh---HHHHHhc-c--------
Confidence 11 1111123467899999999999999999999888765531 1111 1111110 0
Q ss_pred CccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHH
Q 000200 513 SARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLE 592 (1871)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~e 592 (1871)
T Consensus 294 -------------------------------------------------------------------------------- 293 (529)
T 3tpo_A 294 -------------------------------------------------------------------------------- 293 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhcCCCccchHHHHHHHHHH
Q 000200 593 EIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWSEKNVQVQQQVIEV 666 (1871)
Q Consensus 593 e~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~------~~~~~~lvr~l~~~PgwkesNfqV~~~~lei 666 (1871)
+-+-++..|.+.++..+..++..+...+...+.. ......|+.++ .+.+-.|.....-+
T Consensus 294 ---------~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL------~~~~~~i~~~a~~a 358 (529)
T 3tpo_A 294 ---------VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL------TNPKTNIQKEATWT 358 (529)
T ss_dssp ---------CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT------TCSSHHHHHHHHHH
T ss_pred ---------chHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH------cCCCHHHHHHHHHH
Confidence 0011233344445555555554444332211100 01234455544 34456677777777
Q ss_pred HHHHHHhcCCCCccc-hhhhccchhhcc--ccchhhhHHHHHHHHHHHhhchHhH--------HHHHHHhhhhcCChhhH
Q 000200 667 INYLAATATKFPKKC-VVLCLLGISERV--ADIKTRAHAMKCLTTFSEAVGPGFI--------FERLYKIMKDHKNPKVL 735 (1871)
Q Consensus 667 l~~la~~~~~fs~~~-~~~~l~~lveKl--gD~K~r~~a~e~L~~~aE~~~~~~V--------~~~l~~~~~~~KnPKv~ 735 (1871)
|..++.......... -.-+++.++.-+ ++.+++..|.-+|..++....++.+ +..++.. ...++++++
T Consensus 359 L~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~L-L~~~d~~i~ 437 (529)
T 3tpo_A 359 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL-LSAKDTKII 437 (529)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHG-GGCSCHHHH
T ss_pred HHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHH-hcCCCHHHH
Confidence 777664211100000 012444444433 4567888888888888876555432 3344544 478999999
Q ss_pred HHHHHHHHHHHHHhccCccc---hHh------HHHHHhhhcCCCccHHHHHHHHHHHHH
Q 000200 736 SEGILWMVSAVEDFGVSHLK---LKD------LIDFCKDTGLQSSAAATRNATIKLLGA 785 (1871)
Q Consensus 736 ~e~l~wl~~ai~eFG~~~~~---~K~------li~~~k~~~l~~sN~~VR~aAi~Ll~~ 785 (1871)
.-+|..|..+++-.. ..-. +.. .++.+..+ ..|.|..|+..|..++-.
T Consensus 438 ~~~L~aL~nil~~~~-~~~~~~~~~~~iee~ggl~~ie~L-q~~~n~~i~~~A~~iie~ 494 (529)
T 3tpo_A 438 QVILDAISNIFQAAE-KLGETEKLSIMIEECGGLDKIEAL-QRHENESVYKASLNLIEK 494 (529)
T ss_dssp HHHHHHHHHHHHHHH-TTTCHHHHHHHHHHTTCHHHHTGG-GGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhH-hccChHHHHHHHHHCCcHHHHHHH-HcCCCHHHHHHHHHHHHH
Confidence 999888888775321 1111 111 24456666 789999999999888643
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.25 Score=65.75 Aligned_cols=598 Identities=14% Similarity=0.114 Sum_probs=340.9
Q ss_pred HHHHHHHHHHhhh----cCCCCCCChHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHhccccccchh-hhHHHHHHHh
Q 000200 302 RKDAVAELTKLAS----TKRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRTHFSGSSR-FLLPVLLEKL 375 (1871)
Q Consensus 302 RkEaLe~l~~l~~----~pKi~~~dy~eL~~~Lkk~l~D-sNv~vv~~A~~~i~~lA~gLr~~F~~y~~-~~~~~lLekl 375 (1871)
|.-|+..|..|.. .-+|...+ -+..|.+++.. .|--++..|++++.+|++|=+..-..-.+ .=.|-++.-+
T Consensus 25 ~~~a~~nl~vl~re~aga~~i~~~~---~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 101 (810)
T 3now_A 25 RRAAANNLVVLAKEQTGAELLYKDH---CIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVL 101 (810)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHTT---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHhhceeeeccccchHHHHhCc---hHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHHHHH
Confidence 4457777777653 22333222 25677777775 88999999999999999986543322211 2245566666
Q ss_pred ccCCHHHHHHHHHHHHHHHHhc--CC-----------------ChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHHhhC
Q 000200 376 KEKKPTVAESLTQTLQAMHKAG--CL-----------------NLVDVVEDVKTSVKNKV--PLVRSLTLNWVTFCIETS 434 (1871)
Q Consensus 376 KEKK~~V~eAl~~aLda~~~~~--~~-----------------~l~~~~e~i~~al~~Kn--P~vk~etl~~L~r~l~~~ 434 (1871)
.-+...+..|+.-++..++... .. .++.++..+...+.+++ ...|-.++..|.|.+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 181 (810)
T 3now_A 102 DQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYT 181 (810)
T ss_dssp HCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCcc
Confidence 6677778888888888887751 11 13345555666777776 799999999999999654
Q ss_pred ChhHHHH-----hhhhhHHHHHhhhCCC--------CHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHh
Q 000200 435 SKAAVLK-----VHKDYVPICMECLNDG--------TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (1871)
Q Consensus 435 ~~~~~~~-----~~k~~~~~l~k~l~Ds--------~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~ 501 (1871)
....... =++.++... ..+.+. .++.|-.+.-|+..+..-++.+.- .+.-.+.+.+++.
T Consensus 182 ~~~~~~~~~~~~g~~~~l~v~-~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~ 253 (810)
T 3now_A 182 ALEWAERLVEIRGLCRLLDVC-SELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEA-------KARFTDQIDEYIK 253 (810)
T ss_dssp TTTHHHHHHHTTHHHHHHHHH-TCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHH-------HHHHHHHHHHHHH
T ss_pred ccccccchhhHhhHHHHHHHH-hcCccccccccCCCChhHHHHHHHHHHHHHHHhccchh-------HHHHHHHHHHHHH
Confidence 2111110 112222221 222333 678999999999999888884321 1111223333332
Q ss_pred cCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCC
Q 000200 502 GSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAP 581 (1871)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~ 581 (1871)
.-- . + .....-. .+.+....-- ++
T Consensus 254 ~~~------------~--------~-~~~~~~~--~a~~alt~i~---------------~g------------------ 277 (810)
T 3now_A 254 DKL------------L--------A-PDMESKV--RVTVAITALL---------------NG------------------ 277 (810)
T ss_dssp HHH------------S--------S-CCHHHHH--HHHHHHHHHH---------------SS------------------
T ss_pred HHh------------c--------c-CChHhHH--HHHHHHHHHh---------------cC------------------
Confidence 100 0 0 0000000 0000000000 00
Q ss_pred CCCCCCCCCHHHHHHHH-hccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccc----hhHHHHHHHHHhcCCCccch
Q 000200 582 EDVEPSEMSLEEIESRL-GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD----QSVEILVRLVCMLPGWSEKN 656 (1871)
Q Consensus 582 ~~~~~~~~s~ee~e~~~-~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~----~~~~~lvr~l~~~PgwkesN 656 (1871)
.+|..-... .+=+=+.++..+.|.+=..+..|++.+...-.....-+ ...+.|+.+ ++++|
T Consensus 278 --------~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~L------l~s~~ 343 (810)
T 3now_A 278 --------PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRL------YHSKN 343 (810)
T ss_dssp --------SHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHH------TTCSC
T ss_pred --------CHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHH------HcCCC
Confidence 011111111 11111556788888888888899988876543321111 112333333 34455
Q ss_pred HHHHHHHHHHHHHHHHhc------CCCCccchhhhccchhhccc----cchhhhHHHHHHHHHHHhh--chHh-----HH
Q 000200 657 VQVQQQVIEVINYLAATA------TKFPKKCVVLCLLGISERVA----DIKTRAHAMKCLTTFSEAV--GPGF-----IF 719 (1871)
Q Consensus 657 fqV~~~~leil~~la~~~------~~fs~~~~~~~l~~lveKlg----D~K~r~~a~e~L~~~aE~~--~~~~-----V~ 719 (1871)
-.+....+-.|..++... ..|....+..+++.++.-+. |.-.+..+.++|.-++... .-++ ++
T Consensus 344 ~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~I 423 (810)
T 3now_A 344 DGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASI 423 (810)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchH
Confidence 555556666777776321 12433333333444444333 4457888888887776421 1222 33
Q ss_pred HHHHHhhhhcCChhhHHHHHHHHHHHHHHhc---------------cCccc----------h----H-----hHHHHHhh
Q 000200 720 ERLYKIMKDHKNPKVLSEGILWMVSAVEDFG---------------VSHLK----------L----K-----DLIDFCKD 765 (1871)
Q Consensus 720 ~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG---------------~~~~~----------~----K-----~li~~~k~ 765 (1871)
..+++.+ ++.++.++-+++.-+..+....- -..++ + + ..+..+..
T Consensus 424 p~LV~LL-~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~ 502 (810)
T 3now_A 424 HALMDLA-RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCA 502 (810)
T ss_dssp HHHHHHH-HTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHh-CCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHH
Confidence 4455554 56789999999988888876321 00000 1 1 34555666
Q ss_pred hcCCCccHHHHHHHHHHHHHHHhhhCchhHhhh--hcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCC
Q 000200 766 TGLQSSAAATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 843 (1871)
Q Consensus 766 ~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l--~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d 843 (1871)
+ |.+.++.||..|...|+-+-. -+..+..+ .+.=|.
T Consensus 503 L-L~s~s~~vqe~Aa~aL~NLA~--d~~~r~~Vv~~Gaip~--------------------------------------- 540 (810)
T 3now_A 503 L-AKTESHNSQELIARVLNAVCG--LKELRGKVVQEGGVKA--------------------------------------- 540 (810)
T ss_dssp H-HTCCCHHHHHHHHHHHHHHHT--SHHHHHHHHHTTHHHH---------------------------------------
T ss_pred H-HcCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHH---------------------------------------
Confidence 6 889999999999998887742 12344443 222223
Q ss_pred CCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCC--ccchHHHHhhhcc-chhHhHHHHHHHHHH
Q 000200 844 GLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG--TGELFGGLRGRLY-DSNKNLVMATLITLG 920 (1871)
Q Consensus 844 ~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~--~geL~~aLk~rl~-DsNk~lv~~al~ii~ 920 (1871)
|+.-+.+..-+.|.+|..++..|+...|+.+--.. ..+.++.|-.-|. |++...+..|+..++
T Consensus 541 --------------Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~ 606 (810)
T 3now_A 541 --------------LLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALT 606 (810)
T ss_dssp --------------HHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred --------------HHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 33333444456789999999998865444331111 1235666766664 434344457888888
Q ss_pred HHHHhcChhHH-hhh-hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc-c------hhhhHHHHHHHhcccCCcchHH
Q 000200 921 AVASAMGPAVE-KSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-L------DKMVPYVTTALTDAKLGAEGRK 991 (1871)
Q Consensus 921 ~lA~amG~~~~-k~~-k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g-l------~~~~~~i~~~L~~~~~~p~~r~ 991 (1871)
.||..- .... .-. -+.+|.++..|.+....||.+|..++.-++..-. . ...++.+...|.++ +...|.
T Consensus 607 NLa~~~-d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~--d~~vq~ 683 (810)
T 3now_A 607 NLASMN-ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE--DEETAT 683 (810)
T ss_dssp HHTTSC-HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS--SHHHHH
T ss_pred HHhcCC-HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC--CHHHHH
Confidence 888753 1222 222 2568999999999999999999999887653211 1 12345555555544 456777
Q ss_pred HHHHHHHHHhcc-CCC-Cc---chhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 992 DLFDWLSKQLTG-LSG-FP---DAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 992 e~l~wL~~~l~~-~~~-~~---~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
+.. |.-..+.. .+. .. +....+.|++..|.+.+.+||+.|-.+|.-+..
T Consensus 684 ~Aa-~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 684 ACA-GALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHH-HHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHH-HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 776 54445554 221 11 113467788889999999999999999988776
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00099 Score=74.85 Aligned_cols=182 Identities=19% Similarity=0.154 Sum_probs=136.3
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCC-CCCC-ChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH---hccccccc
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKR-IAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG---LRTHFSGS 363 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pK-i~~~-dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~g---Lr~~F~~y 363 (1871)
.+...+.+..+..|.+|+..|..+..... .... --...+..|-+.+.+.|..+...|+.+++.|+.. .+..+.
T Consensus 6 ~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-- 83 (252)
T 4hxt_A 6 KLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV-- 83 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH--
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH--
Confidence 47778888889999999999998875432 0000 0014678888899989999999999999999864 222221
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCh------hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh
Q 000200 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1871)
Q Consensus 364 ~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l------~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~ 437 (1871)
....++.++.-+++..+.|++.+..+|-.+... .... ...++.+...+++.+|.++..++..|....... ..
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~ 161 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-DE 161 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HH
Confidence 335799999999999999999999999888642 1010 135678888999999999999888888665432 22
Q ss_pred HHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Q 000200 438 AVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1871)
Q Consensus 438 ~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk 474 (1871)
....+. ...+|.++.++.+.+++||..|..+|+.+..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 211221 4589999999999999999999999998874
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0091 Score=79.38 Aligned_cols=418 Identities=14% Similarity=0.103 Sum_probs=249.3
Q ss_pred cccCcCchhHHHHHHHHHHHHhhhcCCCCchhhhhhhhchhhhcCCCCHHHHHHHHHHHHHHHHHcC--h---hhhhh-h
Q 000200 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAAD--A---DAGRY-A 91 (1871)
Q Consensus 18 erl~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~DsN~~aqek~leal~~~l~~a~--~---~~~~~-~ 91 (1871)
.-+.|.+=-.+..|++.+...... .+..+.......+++.+.+...|..+|+.++-+|+.+-...+ . .+... .
T Consensus 297 ~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i 375 (810)
T 3now_A 297 AMATTDDELQQRVACECLIAASSK-KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAA 375 (810)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccH
Confidence 345566666778888888776521 000111112234677788999999999987777765543221 1 11111 1
Q ss_pred hHHHHHHHHhhhc-C--ChhhHHHHHHHHHHHHhhcch-------hhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhC-
Q 000200 92 KEVCDAIAAKCLT-G--RPKTVEKAQAVFMLWVELEAV-------DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFG- 160 (1871)
Q Consensus 92 ~~~~~~lveK~L~-~--r~~tk~~a~e~~l~~vE~e~~-------~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG- 160 (1871)
..+++.+ -+.|. . .+..++.|.+++.-+..-... ..++..|+..+++.++.++-+++.+|.++...+=
T Consensus 376 ~~Lv~~l-~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 376 LKLAEAC-RRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp HHHHHHH-HHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchh
Confidence 2233333 33343 3 567888888887766543221 2566777888888999999999999999987431
Q ss_pred --------------CCccC----------h----h-----HHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhHH
Q 000200 161 --------------AKIIP----------P----K-----RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTI 207 (1871)
Q Consensus 161 --------------~~vv~----------~----K-----~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~lk~~ 207 (1871)
-..++ . + -.+..|..++.+.++.||.+|...+..|- |..-.+..
T Consensus 455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA---~d~~~r~~ 531 (810)
T 3now_A 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC---GLKELRGK 531 (810)
T ss_dssp CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH---TSHHHHHH
T ss_pred hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc---CCHHHHHH
Confidence 11111 0 1 14667778889999999999999988885 33223333
Q ss_pred Hh-hhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCC
Q 000200 208 LF-EKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLE 286 (1871)
Q Consensus 208 L~-~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klp 286 (1871)
+. .+.=|..+.-|. .+. + ..|......-. ..... . ||--.+....+..-+|
T Consensus 532 Vv~~Gaip~Lv~LL~------s~~--~--~~k~~Aa~AL~--nL~~~--~--------------~p~~~~~~~~~~~aIp 583 (810)
T 3now_A 532 VVQEGGVKALLRMAL------EGT--E--KGKRHATQALA--RIGIT--I--------------NPEVSFSGQRSLDVIR 583 (810)
T ss_dssp HHHTTHHHHHHHHHH------SSC--H--HHHHHHHHHHH--HHHHH--S--------------CHHHHTTTHHHHHTHH
T ss_pred HHHCCCHHHHHHHHc------cCC--H--HHHHHHHHHHH--HHhcC--C--------------ChhhhhcchhhhcHHH
Confidence 32 111122223331 111 1 11111110000 00000 0 0000000000111122
Q ss_pred chhhhhhhhcc-ChHHHHHHHHHHHHhhhcC-C----CCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh--cc
Q 000200 287 KSGFWEGVKAT-KWSERKDAVAELTKLASTK-R----IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL--RT 358 (1871)
Q Consensus 287 k~~f~~~l~s~-KWkeRkEaLe~l~~l~~~p-K----i~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gL--r~ 358 (1871)
-+.+-+.+. .=..+.+|+..|..|++.+ . +... ..+..|-.++.+.|..|...|+.||+.|+.+- +.
T Consensus 584 --pLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~a---G~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~ 658 (810)
T 3now_A 584 --PLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKE---QGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK 658 (810)
T ss_dssp --HHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT---THHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred --HHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHc---CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence 244444432 2233568999999887653 1 1111 13667777788889999999999999999753 22
Q ss_pred ccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc---CCCh---hhhHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 000200 359 HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---CLNL---VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1871)
Q Consensus 359 ~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~---~~~l---~~~~e~i~~al~~KnP~vk~etl~~L~r~l~ 432 (1871)
.|. .....++.++.-+...+..|+.++..||-.+.... +-.+ ..+++.+...+.+.++.+|.+++.-|.....
T Consensus 659 ~~v-~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 659 MFE-GNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHH-SSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHH-hccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 232 11368899999999999999999999999887620 1011 2366788889999999999998888877766
Q ss_pred hCChhHHHHhh-hhhHHHHHhhhCCC---CHHHHHHHHHHHHHHHHH
Q 000200 433 TSSKAAVLKVH-KDYVPICMECLNDG---TPEVRDAAFSVLAAIAKS 475 (1871)
Q Consensus 433 ~~~~~~~~~~~-k~~~~~l~k~l~Ds---~~~VR~aA~~~l~~lmk~ 475 (1871)
. .+.....+. ..++++++.++.++ +++|++.|.++|..+++.
T Consensus 738 ~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 738 A-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp T-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 3 332222333 24899999999655 899999999999888753
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0064 Score=65.77 Aligned_cols=208 Identities=19% Similarity=0.293 Sum_probs=156.4
Q ss_pred cccCCCCchhhhh----hhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHH
Q 000200 280 DILTPLEKSGFWE----GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLAR 354 (1871)
Q Consensus 280 dIl~klpk~~f~~----~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~ 354 (1871)
=|..++.+ .|.+ -+.+.-|..||.||--+-.+... .+.-|..+++-|-..+. |--|.+-+.-++.+|.+|+
T Consensus 24 i~~a~~d~-~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~---~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~ 99 (253)
T 2db0_A 24 LIMAKYDE-SVLKKLIELLDDDLWTVVKNAISIIMVIAKT---REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK 99 (253)
T ss_dssp HHHHHHCH-HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT---CGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhH-HHHHHHHHHhccHHHHHHHhHHHHHHHHHHH---hHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHH
Confidence 34445543 4554 45778899999999988877642 23337778888877777 8888888888888888886
Q ss_pred Hhcccccc-chhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q 000200 355 GLRTHFSG-SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433 (1871)
Q Consensus 355 gLr~~F~~-y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~ 433 (1871)
- .| -++.++|.+++-+.=--+.++=-+.-+|..++..+...+..+.+||..-+.+||-.=|..+++|+.-.=.+
T Consensus 100 i-----~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen 174 (253)
T 2db0_A 100 E-----KPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN 174 (253)
T ss_dssp H-----CHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred h-----CHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence 4 33 37889999999877767777878889999999875455778899999999999988899999998854444
Q ss_pred CChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC--hhHHHHHhhcCC---HHHHHHHHHHHh
Q 000200 434 SSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG--MRPLERSIEKLD---DVRRNKLSEMIA 501 (1871)
Q Consensus 434 ~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G--e~~l~~~l~~Ld---~~kk~KI~e~~~ 501 (1871)
+. +..-+++|-+..+|+|.+.-||-.|.++|+.+...-- -+.+..-++.+| +.-+++++|.+.
T Consensus 175 ~~-----~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 175 SF-----KYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp TH-----HHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred Cc-----cccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 43 3446789999999999999999999999998874322 122334444554 566778888764
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00091 Score=79.22 Aligned_cols=171 Identities=13% Similarity=0.127 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHhhhcCCCCC--CChHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHH---hccccccchhhhHHHHHH
Q 000200 300 SERKDAVAELTKLASTKRIAP--GDFTEVCRTLKK-LITDVNIAVAVEAIQAIGNLARG---LRTHFSGSSRFLLPVLLE 373 (1871)
Q Consensus 300 keRkEaLe~l~~l~~~pKi~~--~dy~eL~~~Lkk-~l~DsNv~vv~~A~~~i~~lA~g---Lr~~F~~y~~~~~~~lLe 373 (1871)
.+|..||+.|..++.+..... ...|-+ ..|-. +|.+.|..|...|+.||+.+|.+ .+..+-. ...+|+++.
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l-~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~--~g~l~~Ll~ 131 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGM-HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG--LGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHH-HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCH-HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH--CCCHHHHHH
Confidence 478899999988775322110 012333 34445 77888999999999999999975 2222222 268899999
Q ss_pred Hhc-cCCHHHHHHHHHHHHHHHHhcCCC-hh-----hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhh-hh
Q 000200 374 KLK-EKKPTVAESLTQTLQAMHKAGCLN-LV-----DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KD 445 (1871)
Q Consensus 374 klK-EKK~~V~eAl~~aLda~~~~~~~~-l~-----~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~-k~ 445 (1871)
-|+ +.+..|++.+.-||-.++.. ... .. ..++.+...|++..+.++.+++..|.......+ .....+. ..
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~-~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~-~~~~~vv~~g 209 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVRE-QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMG 209 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHTT
T ss_pred HHccCCCHHHHHHHHHHHHHHHcC-CcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCh-HHHHHHHHcC
Confidence 999 46899999998998888753 111 11 245667788899999999999887777665532 2222222 34
Q ss_pred hHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000200 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1871)
Q Consensus 446 ~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1871)
++|.++.+|...++.||+.|..+|+.|.+.
T Consensus 210 ~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 210 MVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999876
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00064 Score=76.97 Aligned_cols=183 Identities=12% Similarity=0.088 Sum_probs=134.9
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhh-cCCCCCC-ChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccc-cchh
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLAS-TKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSR 365 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~~-dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~-~y~~ 365 (1871)
-+..-+.+..+..|.+++..|..+.. ++..... --...+..|...+.+.|..+...|+.+++.|+.+-..... -...
T Consensus 58 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 137 (252)
T 4db8_A 58 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 137 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHC
Confidence 46777888889999999999988874 2221100 0012677888889989999999999999999875432211 1234
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC-h-----hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHH
Q 000200 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1871)
Q Consensus 366 ~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~-l-----~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~ 439 (1871)
..+|.+++-+++....|+..+..+|-.+... ... . ..+++.+...+++.++.++..++..|....... +...
T Consensus 138 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~ 215 (252)
T 4db8_A 138 GALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQK 215 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHHH
Confidence 5899999999999999999998888888642 100 0 235677888999999999999998888776433 2222
Q ss_pred HHhhh-hhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 440 LKVHK-DYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 440 ~~~~k-~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
..+.. ..++.++.++.+.+++||..|+.+|+.+.
T Consensus 216 ~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 216 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 22223 48899999999999999999999998664
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0048 Score=67.78 Aligned_cols=151 Identities=11% Similarity=0.105 Sum_probs=110.9
Q ss_pred ChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccc-chhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC
Q 000200 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN 400 (1871)
Q Consensus 322 dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~-y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~ 400 (1871)
++.+....|.+++.+.|..+...|+.+|+.|+.+=...-.. .....+|.+++-+++..+.|++.+..+|-.+... ...
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNE 87 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CcH
Confidence 34556678888889999999999999999999653221111 1236899999999999999999988888887532 101
Q ss_pred h------hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 401 L------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 401 l------~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
. ...++.+...|++.+|.+|..++.-|...... .......++ ..++|.++..+.+.+++||..|+.+|+.+.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 0 12567888999999999999888777655543 222222222 458999999999999999999999999987
Q ss_pred H
Q 000200 474 K 474 (1871)
Q Consensus 474 k 474 (1871)
.
T Consensus 167 ~ 167 (210)
T 4db6_A 167 S 167 (210)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0045 Score=69.40 Aligned_cols=186 Identities=18% Similarity=0.123 Sum_probs=137.9
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhc-CCCCCC-ChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc---cccccc
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR---THFSGS 363 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~-pKi~~~-dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr---~~F~~y 363 (1871)
.+..-+.+.....|..++..|..+... +..... --...+..|...+.|.+..+...|+.+++.|+.+-. ..+.
T Consensus 48 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-- 125 (252)
T 4hxt_A 48 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV-- 125 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH--
Confidence 466677888899999999999888753 221100 001357788888889999999999999999996322 1121
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCh------hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh
Q 000200 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1871)
Q Consensus 364 ~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l------~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~ 437 (1871)
....++.+++-+++..+.|+..+..+|-.+... .-.. ..+++.+...+.+.+|.+|..++..|...... .+.
T Consensus 126 ~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~ 203 (252)
T 4hxt_A 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PTS 203 (252)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-BHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-CHH
Confidence 236799999999999999999999988888642 1000 12567888999999999999998888876653 222
Q ss_pred HHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000200 438 AVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1871)
Q Consensus 438 ~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge 478 (1871)
....+. ..+++.++..+.+.+++||+.|..+|+.+...-+.
T Consensus 204 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 204 AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 222222 34789999999999999999999999999876554
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0011 Score=84.11 Aligned_cols=304 Identities=17% Similarity=0.179 Sum_probs=180.5
Q ss_pred HHHHHhhhhcCChhhHHHHHHHHHHHH----------HHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhh
Q 000200 720 ERLYKIMKDHKNPKVLSEGILWMVSAV----------EDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789 (1871)
Q Consensus 720 ~~l~~~~~~~KnPKv~~e~l~wl~~ai----------~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~ 789 (1871)
..++..+....+|.+|.++...|+.+- -+.| .|+.+..+ |.+.|+.||..|+..|+.|-.
T Consensus 103 p~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~G--------aIp~Lv~l-L~s~~~~v~e~A~~aL~nLa~- 172 (510)
T 3ul1_B 103 PKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGG--------AIPAFISL-LASPHAHISEQAVWALGNIAG- 172 (510)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT--------HHHHHHHH-TTCSCHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCC--------CHHHHHHH-HcCCCHHHHHHHHHHHHHHHh-
Confidence 334444444556666666655444432 2223 34555666 999999999999999988742
Q ss_pred hCchhHhhh--hcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCCh
Q 000200 790 VGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDW 867 (1871)
Q Consensus 790 ~G~~l~~~l--~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~W 867 (1871)
-++..+..+ .+.-+.++..|... . .........|.....-+.-..+.+..+..+....+-+.|+.-+.+.+.
T Consensus 173 d~~~~r~~v~~~G~i~~Ll~lL~~~-----~-~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~ 246 (510)
T 3ul1_B 173 DGSAFRDLVIKHGAIDPLLALLAVP-----D-LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 246 (510)
T ss_dssp TCHHHHHHHHHTTCHHHHHHHTCSS-----C-GGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCH
T ss_pred CCHHHHHHHHHcCChHHHHHHHHhc-----c-chhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCH
Confidence 134455554 34445555554211 0 000000000000000000000011222223333344567778899999
Q ss_pred HHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh-hhhhhHHHHHHhc
Q 000200 868 KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLG 946 (1871)
Q Consensus 868 K~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~-~k~l~~~il~~l~ 946 (1871)
.+|..|+..+..+....+.+++.-....++..|-..|.+.+..++..++.+++.|+.+-....... -...++.++..|.
T Consensus 247 ~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~ 326 (510)
T 3ul1_B 247 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 326 (510)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTT
T ss_pred HHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhc
Confidence 999999999998875332232221113467777788888999999999999999976432221111 2357788888999
Q ss_pred cCchhHHHHHHHHHHHHHHhcc-------chhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcch-----hhhh
Q 000200 947 DNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA-----AHLL 1014 (1871)
Q Consensus 947 D~K~~vR~aa~~alda~~~~~g-------l~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~-----~~~~ 1014 (1871)
+.+..+|..+..+|..+..... -..+++.+...|.++ ++..|.+...-|. .+....+.... ...+
T Consensus 327 ~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~Aa~aL~-Nl~~~~~~~~~~~L~~~g~i 403 (510)
T 3ul1_B 327 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKEAAWAIT-NYTSGGTVEQIVYLVHCGII 403 (510)
T ss_dssp CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHH-HHHHHCCHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHH-HHHccCCHHHHHHHHHCCCH
Confidence 9999999999988876643211 123456677777754 5778888765554 34332221111 2357
Q ss_pred hHHhhhcCCCCHHHHHHHHHHHHHHHHh
Q 000200 1015 KPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1871)
Q Consensus 1015 ~p~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1871)
.|++..|.+.+.+++..+-.+|..++..
T Consensus 404 ~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 404 EPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999998888763
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=97.05 E-value=1.7 Score=59.87 Aligned_cols=382 Identities=13% Similarity=0.062 Sum_probs=208.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcChhhhhhhhHHHHHHHHhhhcCChhhHHHHHHHHHHHHhhc--ch----hh-HH---HHH
Q 000200 64 SNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE--AV----DV-FL---DVM 133 (1871)
Q Consensus 64 sN~~aqek~leal~~~l~~a~~~~~~~~~~~~~~lveK~L~~r~~tk~~a~e~~l~~vE~e--~~----~~-v~---e~l 133 (1871)
.|......+++++..|+...+... -....++..+.++.+ +.+..+..|.+|+...+... .. +. +. ..+
T Consensus 207 ~~~~~~~~aL~~l~~~l~wi~~~~-~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~ 284 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLHWIPYRY-IYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNT 284 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCTHH-HHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCHHH-HhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHH
Confidence 467778888888888876543211 011345666666655 36888889999998888652 11 11 11 111
Q ss_pred HHHhhc-cCchh-------------HHHHHHHHHHHHHhhCCCcc-----------ChhHHHhhchhhhcccChhHHHHH
Q 000200 134 EKAIKN-KVAKA-------------VVPAIDVMFQALSEFGAKII-----------PPKRILKMLPELFDHQDQNVRASS 188 (1871)
Q Consensus 134 l~~~~~-K~PKv-------------vaaai~~l~~~l~~FG~~vv-----------~~K~ilk~l~~lf~~~dk~VR~ea 188 (1871)
+..+.. =.|.+ -.+-+..+.+.+..||-..+ .+..++..+=.+..+.|-.|+..+
T Consensus 285 l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~ 364 (1049)
T 3m1i_C 285 LQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTT 364 (1049)
T ss_dssp HHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 111111 11111 01112233344444442110 022345555555567888888888
Q ss_pred HHHHHHHHHhh--CCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCC
Q 000200 189 KGLTLELCRWI--GKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADV 266 (1871)
Q Consensus 189 ~~L~vely~wl--G~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (1871)
..+...+-..+ .+. . ....+|...+-+..-+.++.- |. + . +-.
T Consensus 365 lefw~~l~~~l~~~~~-~----~~~~~~~l~~Lv~~ll~~m~~---~e-------d--------------~---~~~--- 409 (1049)
T 3m1i_C 365 LDYWHNLVADLFYEPL-K----KHIYEEICSQLRLVIIENMVR---PE-------E--------------V---LVV--- 409 (1049)
T ss_dssp HHHHHHHHHHHHHSTT-C----GGGGHHHHHHHHHHHHHTCCC---CT-------T--------------C---CEE---
T ss_pred HHHHHHHHHHHHhchh-H----HHHHHHHHHHHHHHHHHhcCC---Cc-------c--------------e---eee---
Confidence 87776665533 121 1 122344444444444444310 10 0 0 000
Q ss_pred CCCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCC-hHHHHHHHHHHhc--cccHHHHH
Q 000200 267 PPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD-FTEVCRTLKKLIT--DVNIAVAV 343 (1871)
Q Consensus 267 ~~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~d-y~eL~~~Lkk~l~--DsNv~vv~ 343 (1871)
+-|+.+ ++- +|.+. +.-|..|+.+-+-|..+... .+.+ ..-+...|...+. ..|-...-
T Consensus 410 --~dd~~e-----~~r------~~~~d--~d~~~~~~~~~~~L~~l~~~---~~~~~l~~v~~~l~~~l~~~~~~W~~~e 471 (1049)
T 3m1i_C 410 --ENDEGE-----IVR------EFVKE--SDTIQLYKSEREVLVYLTHL---NVIDTEEIMISKLARQIDGSEWSWHNIN 471 (1049)
T ss_dssp --ECTTSC-----EEE------CSSCC--HHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred --eCCCCc-----chH------hhhcc--chHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 001100 000 01110 11267777666655555421 1111 2233444555554 35667788
Q ss_pred HHHHHHHHHHHHhccccc-cchhhhHHHHHHHhc------cCCHHHHHHHHHHHH---HHHHhcCCChhhhHHHHHHHhh
Q 000200 344 EAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKLK------EKKPTVAESLTQTLQ---AMHKAGCLNLVDVVEDVKTSVK 413 (1871)
Q Consensus 344 ~A~~~i~~lA~gLr~~F~-~y~~~~~~~lLeklK------EKK~~V~eAl~~aLd---a~~~~~~~~l~~~~e~i~~al~ 413 (1871)
.|+-+++.+|.++...-. .|...+++.++. +- +.++.|+..+..++- .|+..+.--|..+++.+..+|.
T Consensus 472 aal~algsia~~~~~~~e~~~l~~v~~~l~~-l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~ 550 (1049)
T 3m1i_C 472 TLSWAIGSISGTMSEDTEKRFVVTVIKDLLD-LTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMH 550 (1049)
T ss_dssp HHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH-HTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccCchhhHHHHHHHHHHHHH-HHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 899999999988865422 345555655554 32 455655543333333 2222211126667788888999
Q ss_pred cCCchhHHHHHHHHHHHHhhCChhHH-------HHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC-hhHHHHHh
Q 000200 414 NKVPLVRSLTLNWVTFCIETSSKAAV-------LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-MRPLERSI 485 (1871)
Q Consensus 414 ~KnP~vk~etl~~L~r~l~~~~~~~~-------~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G-e~~l~~~l 485 (1871)
+.+|.|+..+..-|.+..+.+..... .+.+..++..+..++++-+.+-+...+++++.++...| .....+++
T Consensus 551 ~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~ 630 (1049)
T 3m1i_C 551 ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLL 630 (1049)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999888888776543321 14456677777788888888888999999999999999 35577788
Q ss_pred hcCCHHHHHHHHHHHh
Q 000200 486 EKLDDVRRNKLSEMIA 501 (1871)
Q Consensus 486 ~~Ld~~kk~KI~e~~~ 501 (1871)
..|=+.-..+...++.
T Consensus 631 ~~l~~~~~~~~~~~~~ 646 (1049)
T 3m1i_C 631 SDLMQLPNMAWDTIVE 646 (1049)
T ss_dssp HHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7766555555555553
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.03 Score=66.28 Aligned_cols=167 Identities=14% Similarity=0.129 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHH---HcccCCCCCCccchHHHHhh-hccchhHhHHHHHHHHHHHHHHhcChhHHhhh--hhhhHHH
Q 000200 868 KVRLESIEAVNKILE---EANKRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDI 941 (1871)
Q Consensus 868 K~RkEaLe~v~~il~---~ankrI~p~~~geL~~aLk~-rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~--k~l~~~i 941 (1871)
..|..||+.+..+++ .+|..++- |-++ .|-. -|...|..+...|+.+|+.+|.. .+.+.+++ ...+|++
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~---G~l~-~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~-n~~~~~~vv~~g~l~~L 129 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQL---SGMH-LLVGRYLEAGAAGLRWRAAQLIGTCSQN-VAAIQEQVLGLGALRKL 129 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHT---THHH-HHHHTTTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHc---CCHH-HHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHH
Confidence 468999999999995 24444433 4344 4444 56888999999999999999863 34455443 2688999
Q ss_pred HHHhc-cCchhHHHHHHHHHHHHHHhc--cch-----hhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCC-C-cc--
Q 000200 942 LKCLG-DNKKHMRECTLTVLDAWLAAV--HLD-----KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-F-PD-- 1009 (1871)
Q Consensus 942 l~~l~-D~K~~vR~aa~~alda~~~~~--gl~-----~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~-~-~~-- 1009 (1871)
+..|. +.+..+|..|..||..+.... +.. ..++.+...|.++ ++.+|.++. |+...|..... . ..
T Consensus 130 l~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~--d~~v~~~A~-~aLs~L~~~~~~~~~~vv 206 (296)
T 1xqr_A 130 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSA-FLLQNLLVGHPEHKGTLC 206 (296)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHH-HHHHHHHHHCGGGHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHH-HHHHHHHhCChHHHHHHH
Confidence 99998 468899999999998876422 122 3455677777754 577888776 44445543321 1 11
Q ss_pred hhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHh
Q 000200 1010 AAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1871)
Q Consensus 1010 ~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1871)
....++|++..|.+.+.+||..|-.+|+.++..
T Consensus 207 ~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 207 SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 134677799999999999999999999999875
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=96.32 E-value=6.2 Score=54.03 Aligned_cols=293 Identities=15% Similarity=0.163 Sum_probs=169.1
Q ss_pred hhhhHHHHHHHHHHHhhch------------HhHHHHHHHhh----hhcCChhhHHHHHHHHHHHHHHhccCccchHhHH
Q 000200 697 KTRAHAMKCLTTFSEAVGP------------GFIFERLYKIM----KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI 760 (1871)
Q Consensus 697 K~r~~a~e~L~~~aE~~~~------------~~V~~~l~~~~----~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li 760 (1871)
...+.+--+|-+++|.+.. ..+++-+...+ ....+|+|+.-++..+++--+-|....=-+.+++
T Consensus 458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L 537 (980)
T 3ibv_A 458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALI 537 (980)
T ss_dssp HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 4578888888888887542 13443332221 2378999999999999988887776554567888
Q ss_pred HHHhh-hcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCC
Q 000200 761 DFCKD-TGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSS 839 (1871)
Q Consensus 761 ~~~k~-~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~ 839 (1871)
.++-. .|+.++|+.||.+|..++..+-+-.++.|.+|+++ +++.|..-+.... + |...
T Consensus 538 ~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~----il~~l~~lL~~~~-~----~~~~------------ 596 (980)
T 3ibv_A 538 EYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTES----SLAMLGDLLNISV-S----PVTD------------ 596 (980)
T ss_dssp HHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHH----HHHHTTGGGCCCC-C----CCCC------------
T ss_pred HHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHH----HHHHHHHhhcCcC-C----CCCc------------
Confidence 88655 24999999999999999999888877766666533 6666554443211 0 1100
Q ss_pred CCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccC--CCCCCccchHHH----Hhhhccc-----hh
Q 000200 840 GGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR--IQPAGTGELFGG----LRGRLYD-----SN 908 (1871)
Q Consensus 840 ~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankr--I~p~~~geL~~a----Lk~rl~D-----sN 908 (1871)
.|. | ....+++.. +.....+..-.|++..|+...+.- -++..+..|+.. +...+.. .+
T Consensus 597 --~~~-~-----~~~~~~~~~---~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~ 665 (980)
T 3ibv_A 597 --MDA-P-----VPTLNSSIR---NSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALEN 665 (980)
T ss_dssp ----C-S-----SCCHHHHHH---TTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CH
T ss_pred --ccc-c-----ccchhhhcc---cCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccH
Confidence 000 0 000112211 224566677777777777532100 011111222222 2222211 22
Q ss_pred HhHHHHHHHHHHHHHHhcChh------HHhhhhhhhHHHHHHhc--cCchhHHHHHHHHHHHHHHhcc--chhhhHHHHH
Q 000200 909 KNLVMATLITLGAVASAMGPA------VEKSSKGVLSDILKCLG--DNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTT 978 (1871)
Q Consensus 909 k~lv~~al~ii~~lA~amG~~------~~k~~k~l~~~il~~l~--D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~~ 978 (1871)
+.-+...+..++.+|++.... +....+..++.++..|. .+...||+++..++..++...| +.+++|.+.+
T Consensus 666 ~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~ 745 (980)
T 3ibv_A 666 IISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLIS 745 (980)
T ss_dssp HHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHH
Confidence 222334566678888877422 44445556666655554 3568999999999999999987 4555665555
Q ss_pred HHhcccCCcchHHHHHHHHHHHhccCCCC--cchhhhhhH----HhhhcC
Q 000200 979 ALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKP----ASIAMT 1022 (1871)
Q Consensus 979 ~L~~~~~~p~~r~e~l~wL~~~l~~~~~~--~~~~~~~~p----~~~~L~ 1022 (1871)
.|-+ ...+..=.+.|.++..-+...+.. +.+..++.| ++.-|+
T Consensus 746 ~ll~-~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~ 794 (980)
T 3ibv_A 746 ILLN-SIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLS 794 (980)
T ss_dssp HHHH-HCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5542 122344567776666555555542 234444555 444554
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=96.31 E-value=1.3 Score=60.39 Aligned_cols=173 Identities=14% Similarity=0.126 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHh----ccccHHHHHHHHHHHH--HHHHHhccccccchhhhHHHHHH
Q 000200 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLI----TDVNIAVAVEAIQAIG--NLARGLRTHFSGSSRFLLPVLLE 373 (1871)
Q Consensus 300 keRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l----~DsNv~vv~~A~~~i~--~lA~gLr~~F~~y~~~~~~~lLe 373 (1871)
+.|+.|=..|...+ +.-+|.|..++..|-+.| .|.+-.-..-|+.++. .+.+-+..++ .+...+++.+++
T Consensus 148 ~VR~~AQ~~L~~~~---~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~-~~~~~~~~ali~ 223 (997)
T 1vsy_5 148 DIYKPAQGTLVHCM---KQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDY-KDIGRLIFLLIE 223 (997)
T ss_dssp HHHHHHHHHHHHHH---TTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcCh-HHHHHHHHHHHH
Confidence 46777766666554 334677776666555555 3566667777777766 5666666665 478899999999
Q ss_pred HhccCCHHHHHHHHHHHHHHHHhcCCC--------------------------------------hh----hhHHHHHHH
Q 000200 374 KLKEKKPTVAESLTQTLQAMHKAGCLN--------------------------------------LV----DVVEDVKTS 411 (1871)
Q Consensus 374 klKEKK~~V~eAl~~aLda~~~~~~~~--------------------------------------l~----~~~e~i~~a 411 (1871)
....-|++|+.-+..+.+.+..+...+ .. .+.+.+++.
T Consensus 224 ~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~~~~~~~~L~~~l~~~ 303 (997)
T 1vsy_5 224 CCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREYYLSLLVDLQDKLLDK 303 (997)
T ss_dssp TCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987777777776642110 00 111111122
Q ss_pred hhc-CC--chhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhH
Q 000200 412 VKN-KV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1871)
Q Consensus 412 l~~-Kn--P~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~ 480 (1871)
.++ .. .....-++.||...+....... -...+..+++.+.|..|.+|+-|..++..+++.+-.+.
T Consensus 304 ~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~----~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il~~~k~~~ 371 (997)
T 1vsy_5 304 LDNEKDMGWKIRMFILRFVTQIQSNLESKP----DKRAVFSIISQISTKHPEIIHLVVKSLLSTCNKIISLS 371 (997)
T ss_dssp HHSSTTCCSCHHHHHHHHHHHHTCCSSCCC----CHHHHHHHHGGGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHHhcCCCCC----CHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 211 11 1222222223222222111110 13457789999999999999999999999888765544
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.12 Score=58.36 Aligned_cols=174 Identities=14% Similarity=0.138 Sum_probs=129.1
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhH
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~ 368 (1871)
++.+-+.+++=+.-.-|+.-|..|+.+--+.+++|.-+..+|+.++.+-|=.+.-.|+..+|.+ .....++-++
T Consensus 79 ~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~ 152 (265)
T 3b2a_A 79 VFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVR 152 (265)
T ss_dssp HHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHH
Confidence 4554455555555555666677788888888999999999999999999999999999998887 3334455666
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhcC--CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhh
Q 000200 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGC--LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1871)
Q Consensus 369 ~~lLeklKEKK~~V~eAl~~aLda~~~~~~--~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~ 446 (1871)
.-++.=++-|+..|-.|+..++..+..+.. --+.+++++|.+.+++++|-++.-.+.-+.+.+...=+..+...+..+
T Consensus 153 ~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~ 232 (265)
T 3b2a_A 153 TYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKI 232 (265)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHH
Confidence 666666699999999999999999988610 128899999999999999999999999999998753222221112233
Q ss_pred HHHHHhhh-CCCCHHHHHHHHHH
Q 000200 447 VPICMECL-NDGTPEVRDAAFSV 468 (1871)
Q Consensus 447 ~~~l~k~l-~Ds~~~VR~aA~~~ 468 (1871)
...+-.+. -.+.|.+|+.|-..
T Consensus 233 ~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 233 SRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp HHHHHHGGGCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChhHHHHHHHH
Confidence 33332333 57889999888643
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.019 Score=58.89 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=81.1
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHH
Q 000200 327 CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVE 406 (1871)
Q Consensus 327 ~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e 406 (1871)
...|...+.|.|..+-..|+.+++.+.. . -++.+++.++|..+.||..+..+|-.+ .-.+.++
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~--------~---~~~~L~~~L~d~~~~vR~~A~~aL~~~------~~~~a~~ 76 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGD--------E---AFEPLLESLSNEDWRIRGAAAWIIGNF------QDERAVE 76 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSS--------T---THHHHHHGGGCSCHHHHHHHHHHHGGG------CSHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCc--------h---HHHHHHHHHcCCCHHHHHHHHHHHHhc------CCHHHHH
Confidence 4445555666666665555555543311 1 158999999999999998776665433 2245688
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHH
Q 000200 407 DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (1871)
Q Consensus 407 ~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~ 471 (1871)
.+...+++.+|.||..+...|.+.- . ...++.+...++|.++.||.+|..+|+.
T Consensus 77 ~L~~~L~d~~~~VR~~A~~aL~~~~----~-------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 77 PLIKLLEDDSGFVRSGAARSLEQIG----G-------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHCCTHHHHHHHHHHHHHC----S-------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhC----c-------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 8889999999999998888777542 1 2347888999999999999999999864
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.23 Score=56.20 Aligned_cols=180 Identities=14% Similarity=0.149 Sum_probs=141.6
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhh
Q 000200 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGV 937 (1871)
Q Consensus 858 l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l 937 (1871)
+++=+.|+|=.+|..||-.+++++..+++....-.+-+++..+-.-+.+.|-.+..-|+.|+..|-.+.-.+=+.|.| +
T Consensus 38 L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~K-l 116 (265)
T 3b2a_A 38 ILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLK-A 116 (265)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHH-H
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHH-H
Confidence 455689999999999999999999987666666567788888888889999999999999999999998777677765 4
Q ss_pred hHHHHHHhccCchhHHHHHHHHHHHHHHhcc-chhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhH
Q 000200 938 LSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (1871)
Q Consensus 938 ~~~il~~l~D~K~~vR~aa~~alda~~~~~g-l~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p 1016 (1871)
+..+....+++...++..+.+.+... ..+. ...+...+..-+.+. |++++.-.+..+.+--.....+.-+..++.-
T Consensus 117 ~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~S~D~~i~~~I~~e 193 (265)
T 3b2a_A 117 AKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSP--DLYTKVAGFCLFLNMLNSSADSGHLTLILDE 193 (265)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGGCSSCCCGGGTTTT
T ss_pred HHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcccCCHHHHHHHHHH
Confidence 56777888899999999999999998 4444 466666777777543 7999999999887654433333334545555
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 1017 ASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 1017 ~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
+---|...++.+|+.|=.+|..+..
T Consensus 194 I~elL~~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 194 IPSLLQNDNEFIVELALDVLEKALS 218 (265)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 5556777799999999888876654
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.14 Score=55.64 Aligned_cols=168 Identities=15% Similarity=0.210 Sum_probs=119.0
Q ss_pred CcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc----cchhHhHHHHHHHHHHHHHHhcChh
Q 000200 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL----YDSNKNLVMATLITLGAVASAMGPA 929 (1871)
Q Consensus 854 it~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl----~DsNk~lv~~al~ii~~lA~amG~~ 929 (1871)
+-++++.-+.|.-|.+||.||--+-.|..+ |-||...|...| .-|- |.-.-+.||.+.|-=
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~---------~~el~epl~~kL~vm~~ksE------aIpltqeIa~a~G~l 97 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKT---------REDLYEPMLKKLFSLLKKSE------AIPLTQEIAKAFGQM 97 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTT---------CGGGHHHHHHHHHHHHHHCC------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHHH---------hHHHHHHHHHHHHHHHhhcc------cCchHHHHHHHHhHH
Confidence 345667778999999999999999988864 456665554322 1111 333445677777743
Q ss_pred HH---hhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc--chhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000200 930 VE---KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1871)
Q Consensus 930 ~~---k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~ 1004 (1871)
.. .-++.++|-++..+.=..+.+|=....+|..++.+-. +..++.+|...|.++ |-.-|..+|.|+. .+...
T Consensus 98 a~i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltsk--d~~Dkl~aLnFi~-alGen 174 (253)
T 2db0_A 98 AKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSK--NREDKLTALNFIE-AMGEN 174 (253)
T ss_dssp HHHCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCS--SHHHHHHHHHHHH-TCCTT
T ss_pred HHhCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHH-HHhcc
Confidence 32 2477888999988777778889899999999988764 466777888888865 4567888999976 22111
Q ss_pred CCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHH
Q 000200 1005 SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1871)
Q Consensus 1005 ~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m 1040 (1871)
. .....+.+.-+++.|.|++.-||..|-+.|+.+-
T Consensus 175 ~-~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA 209 (253)
T 2db0_A 175 S-FKYVNPFLPRIINLLHDGDEIVRASAVEALVHLA 209 (253)
T ss_dssp T-HHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHH
T ss_pred C-ccccCcchHHHHHHHcCcchhhhHHHHHHHHHHH
Confidence 1 1234556666999999999999999988887653
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.27 Score=67.09 Aligned_cols=141 Identities=14% Similarity=0.180 Sum_probs=97.8
Q ss_pred chhhhcCCCCHHHHHHHHHHHHHHHHHcCh-hhh--hhhhHHHHHHHHhhhc-C-ChhhHHHHHHHHHHHH-hh---cch
Q 000200 56 LFKKTVADSNAPVQDKALDALIAYLKAADA-DAG--RYAKEVCDAIAAKCLT-G-RPKTVEKAQAVFMLWV-EL---EAV 126 (1871)
Q Consensus 56 l~kk~v~DsN~~aqek~leal~~~l~~a~~-~~~--~~~~~~~~~lveK~L~-~-r~~tk~~a~e~~l~~v-E~---e~~ 126 (1871)
.+...+.|+.-..|-.+.|.+..++..+-. ... ...-+|+..++.+||. + .+-|..-= ..|+.|+ +. ...
T Consensus 512 ~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W-~~~i~~~~~~~DprR~ 590 (997)
T 1vsy_5 512 LCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIW-STLAWWLPAVVDLRRS 590 (997)
T ss_dssp HHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHH-HHHHHHHHHHSCGGGC
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHH-HHHHHHHhcCCChhhh
Confidence 445678999999999999998887765322 122 2255788899999997 5 55555532 2222332 22 223
Q ss_pred hhHHHHHHHHh-----hccCchhHHHHHHHHHHHHHhhCCCccChhHHHhhchhhhcccChhHHHHHHHHHHHHHHhh
Q 000200 127 DVFLDVMEKAI-----KNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWI 199 (1871)
Q Consensus 127 ~~v~e~ll~~~-----~~K~PKvvaaai~~l~~~l~~FG~~vv~~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~wl 199 (1871)
..++|.|..+- ..-.+=..+.-+..|..++.+.|-+.-..+.++..+- ++|.-++||++-..++..++...
T Consensus 591 ~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~ 666 (997)
T 1vsy_5 591 KTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQ 666 (997)
T ss_dssp HHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhh
Confidence 46666663211 1223445566789999999999998666888887777 99999999999999998888775
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=94.94 E-value=18 Score=49.66 Aligned_cols=173 Identities=14% Similarity=0.129 Sum_probs=104.9
Q ss_pred ccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHH----hccccccchhhhHHH
Q 000200 296 ATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARG----LRTHFSGSSRFLLPV 370 (1871)
Q Consensus 296 s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~g----Lr~~F~~y~~~~~~~ 370 (1871)
++.=..|++|-+.|..+-++| ++- ..+..++. +.+..+-..|+..+....+. +...-..+.|..+-.
T Consensus 27 ~p~~~~r~~Ae~~L~~~~~~p-----~~~---~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~ 98 (1049)
T 3m1i_C 27 QGSGVQQKQAQEILTKFQDNP-----DAW---QKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVG 98 (1049)
T ss_dssp HCCHHHHHHHHHHHHHHHHST-----TGG---GGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhCc-----hHH---HHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHH
Confidence 344457999999998886665 222 12233333 67888899999999887753 223333455554444
Q ss_pred HHHHhc-cC-----CHHHHHHHHHHHHHHHHhcC-CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhh---CCh----
Q 000200 371 LLEKLK-EK-----KPTVAESLTQTLQAMHKAGC-LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET---SSK---- 436 (1871)
Q Consensus 371 lLeklK-EK-----K~~V~eAl~~aLda~~~~~~-~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~---~~~---- 436 (1871)
.+.... +- .+.|+..+..++-.++.+.. -.-.++++++...++ .++..+...+..|...-+. ...
T Consensus 99 ~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~ 177 (1049)
T 3m1i_C 99 MIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMT 177 (1049)
T ss_dssp HHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSC
T ss_pred HHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 444432 11 35899999999999988721 124478888888886 4555555445544433321 111
Q ss_pred --------hHHHHhhhhhHHHHHhhhCC-CCHHHHHHHHHHHHHHHHHhC
Q 000200 437 --------AAVLKVHKDYVPICMECLND-GTPEVRDAAFSVLAAIAKSVG 477 (1871)
Q Consensus 437 --------~~~~~~~k~~~~~l~k~l~D-s~~~VR~aA~~~l~~lmk~~G 477 (1871)
..+...+..+...+..++++ .++++|.++.+|+..++..+.
T Consensus 178 ~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~ 227 (1049)
T 3m1i_C 178 QAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP 227 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC
Confidence 11222234456666777754 357899999999987765443
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=94.60 E-value=2.4 Score=58.28 Aligned_cols=383 Identities=12% Similarity=0.072 Sum_probs=212.8
Q ss_pred HHHHHHhcc--ccHHHHHHHHHHHHHHHHHhccc-cccchhhhHHHHHHHhc-----cCCHHHHHHHHHHHHH---HHHh
Q 000200 328 RTLKKLITD--VNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPVLLEKLK-----EKKPTVAESLTQTLQA---MHKA 396 (1871)
Q Consensus 328 ~~Lkk~l~D--sNv~vv~~A~~~i~~lA~gLr~~-F~~y~~~~~~~lLeklK-----EKK~~V~eAl~~aLda---~~~~ 396 (1871)
..|+..+.+ .+-...-.++=|+|.|+.|+... -.++...++|.++.-.. |.|+.|++.+.-++-. |...
T Consensus 454 ~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~ 533 (1023)
T 4hat_C 454 SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA 533 (1023)
T ss_dssp HHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc
Confidence 334444442 45777778888999999999865 77889999999988765 5777777655444432 2222
Q ss_pred cCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhH-------HHHhhhhhHHHHHhhhCCCCHHHHHHHHHHH
Q 000200 397 GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA-------VLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (1871)
Q Consensus 397 ~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~-------~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l 469 (1871)
+..-|..++..+..+|...+|.|...+..=|.+.-+.+...- ..+++..++..+..++++-++.-+...++++
T Consensus 534 ~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai 613 (1023)
T 4hat_C 534 HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKAC 613 (1023)
T ss_dssp CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 112266777888889988889887765554444433332211 1234566777788888888999999999999
Q ss_pred HHHHHHhChhH-HHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCC
Q 000200 470 AAIAKSVGMRP-LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPV 548 (1871)
Q Consensus 470 ~~lmk~~Ge~~-l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 548 (1871)
|+++..++... ...+++.|=+.--.+..+.++.+.. . |.--......+.-.
T Consensus 614 ~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~-----~--------------~~~~~d~~~~~~l~--------- 665 (1023)
T 4hat_C 614 GIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTA-----N--------------PTLLLDSETVKIIA--------- 665 (1023)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----C--------------TTGGGCHHHHHHHH---------
T ss_pred HHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhc-----C--------------chhhcCHHHHHHHH---------
Confidence 99999999544 6667777766666666666543100 0 00000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHH
Q 000200 549 SAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQ 628 (1871)
Q Consensus 549 ~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~ 628 (1871)
..=++-..+..-++..+..++. .-|..=++-|+...+.
T Consensus 666 -----------------------------------------~il~~~~~v~~~lg~~f~~~~~-~i~~~~l~~y~~~s~~ 703 (1023)
T 4hat_C 666 -----------------------------------------NIIKTNVAVCTSMGADFYPQLG-HIYYNMLQLYRAVSSM 703 (1023)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------HHHHHHHHHHHHhcHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 0000000000011112222211 1233334444444333
Q ss_pred HHh-h---hccc--------------hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHH-HHHhcCCCCccchhhhccch
Q 000200 629 VEA-V---QNLD--------------QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINY-LAATATKFPKKCVVLCLLGI 689 (1871)
Q Consensus 629 v~~-~---~~~~--------------~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~-la~~~~~fs~~~~~~~l~~l 689 (1871)
+.. . .... ....++.+|+.+.+.-.+-.-+.+.-.++.+.. .....+..-..++-.++..+
T Consensus 704 i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~i 783 (1023)
T 4hat_C 704 ISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTV 783 (1023)
T ss_dssp HHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHH
T ss_pred HHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHH
Confidence 321 0 0000 012334444444332222122223333332222 22222223345667788888
Q ss_pred hhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhh--cCChhhHHHHHHHHHHHHHHhccC--ccc---hHhHHHH
Q 000200 690 SERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKD--HKNPKVLSEGILWMVSAVEDFGVS--HLK---LKDLIDF 762 (1871)
Q Consensus 690 veKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~--~KnPKv~~e~l~wl~~ai~eFG~~--~~~---~K~li~~ 762 (1871)
|+|+|+. +....-.+|-.+.|. -+..+.+ .-+|..+.+-...+..++...=.. .++ .|.+|+.
T Consensus 784 v~~~~~~-~~~~~~~il~~vf~~---------Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~ 853 (1023)
T 4hat_C 784 VEKVGHM-IPQGVILILQSVFEC---------TLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDA 853 (1023)
T ss_dssp HHHHGGG-CHHHHHHHHHHHHHH---------HHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHh-hhhhhHHHHHHHHHH---------HHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHH
Confidence 8888863 444444444444333 2222211 457999999999998887753211 233 4789998
Q ss_pred HhhhcCCCccHHHHHHHHHHHHHHHhhhC
Q 000200 763 CKDTGLQSSAAATRNATIKLLGALHKFVG 791 (1871)
Q Consensus 763 ~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G 791 (1871)
+.=+ +.|++..|=..+++.+-.+...+.
T Consensus 854 ~~~a-~~h~~r~~~~~~l~~~~~ll~~~~ 881 (1023)
T 4hat_C 854 ICWA-FKHNNRDVEVNGLQIALDLVKNIE 881 (1023)
T ss_dssp HHHH-HTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-cCCCchHHHHHHHHHHHHHHHHHH
Confidence 8775 999999999999999988876554
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=94.56 E-value=0.17 Score=53.27 Aligned_cols=109 Identities=17% Similarity=0.312 Sum_probs=84.2
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1871)
+.+.||-. +-+|++-.| -++.+-.|.+++|++||+..|.+++..||.++..+..=.|+.|... .+-|+.
T Consensus 18 l~~~dw~~-------ileicD~I~--~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~ 88 (140)
T 3ldz_A 18 NTAEDWGL-------ILDICDKVG--QSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFAS 88 (140)
T ss_dssp SSSCCHHH-------HHHHHHHHT--TSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHH
T ss_pred CCCcCHHH-------HHHHHHHHH--CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 56788964 333343322 2344457999999999999999999999999999999999999864 466887
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHH
Q 000200 940 DILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTA 979 (1871)
Q Consensus 940 ~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~ 979 (1871)
.+...+...-+.|++-+++.+..|.....-++=+..|.+.
T Consensus 89 el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~ 128 (140)
T 3ldz_A 89 EVSNVLNKGHPKVCEKLKALMVEWTDEFKNDPQLSLISAM 128 (140)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGTHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 7777776677899999999999999987655545545443
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=94.49 E-value=22 Score=48.60 Aligned_cols=169 Identities=11% Similarity=0.046 Sum_probs=108.3
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHhccc----cccchhhhHHH
Q 000200 298 KWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDV---NIAVAVEAIQAIGNLARGLRTH----FSGSSRFLLPV 370 (1871)
Q Consensus 298 KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~Ds---Nv~vv~~A~~~i~~lA~gLr~~----F~~y~~~~~~~ 370 (1871)
.=..|++|.+-|..+-++|- -....-.++.++ |..+-.-|++++....+.|... =..+.|..+-.
T Consensus 21 d~~~r~~A~~~L~~~q~sp~--------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~ 92 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSSST--------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWS 92 (980)
T ss_dssp CHHHHHHHHHHHHHHHHSTT--------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcChh--------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHH
Confidence 56789999888888766542 234444555532 7899999999999988866665 55666777777
Q ss_pred HHHHhc--cCCHHHHHHHHHHHHHHHHhc-CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHh----h-----CC---
Q 000200 371 LLEKLK--EKKPTVAESLTQTLQAMHKAG-CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE----T-----SS--- 435 (1871)
Q Consensus 371 lLeklK--EKK~~V~eAl~~aLda~~~~~-~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~----~-----~~--- 435 (1871)
++.+.. .-.+.|+..+..++-.++.+. -..-.++++++...+.+.++. ....++-|.|. . .+
T Consensus 93 ~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~---~~~~~~LriL~~i~EEv~~~~~~~~~ 169 (980)
T 3ibv_A 93 YIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQS---EFSNFYLKVLLSIGDEIADSLVLKTD 169 (980)
T ss_dssp HHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHCCCCSCCCH
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChh---HHHHHHHHHHHHhHHHHHhcccccCH
Confidence 777653 345689999999999999871 123457888898888766652 23334444443 1 00
Q ss_pred ----hh-HHHHh-----hhhhHHHHH----hhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000200 436 ----KA-AVLKV-----HKDYVPICM----ECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1871)
Q Consensus 436 ----~~-~~~~~-----~k~~~~~l~----k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1871)
+. .+.+. +..+.+.++ .+.+..+++++..+.+||+..+.-+.
T Consensus 170 ~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~ 225 (980)
T 3ibv_A 170 VQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN 225 (980)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC
Confidence 00 01111 111234333 44444788999999999998886433
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.12 Score=52.96 Aligned_cols=86 Identities=19% Similarity=0.202 Sum_probs=68.5
Q ss_pred hhHHHHhhCCChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCcccCccchHHHHH
Q 000200 1258 LPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVA 1337 (1871)
Q Consensus 1258 lP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v~~~~Kal~~ia 1337 (1871)
+|.|+.-+.|+...||...-.. +..+. ....++.|++.+++.|+.+|.+++.-|+.+ | ...+++.+.
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~a---L~~~~-~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~----~-----~~~a~~~L~ 110 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWI---IGNFQ-DERAVEPLIKLLEDDSGFVRSGAARSLEQI----G-----GERVRAAME 110 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHH---HGGGC-SHHHHHHHHHHHHHCCTHHHHHHHHHHHHH----C-----SHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH---HHhcC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----C-----cHHHHHHHH
Confidence 4888888888888888754333 33332 356788999999999999999999999875 2 446788888
Q ss_pred HHhccCChhHHHHHHHHHH
Q 000200 1338 SLTAERDGEIRKAALNTLA 1356 (1871)
Q Consensus 1338 ~~i~drD~~VR~AALn~l~ 1356 (1871)
..+.|.|+.||.+|..+|+
T Consensus 111 ~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 111 KLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHTTSCCTHHHHHHHHHGG
T ss_pred HHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999886
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=94.05 E-value=0.2 Score=54.12 Aligned_cols=108 Identities=13% Similarity=0.309 Sum_probs=80.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1871)
+.+.||-.=.| |-.+|+. ++.+-.|.+++|++||+..|.+++..||.++..+..=.|+.|... .+-|+.
T Consensus 28 ~~~~Dw~~~le----icD~I~~-----~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~ 98 (163)
T 1x5b_A 28 NTTEDWSLIMD----ICDKVGS-----TPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFAT 98 (163)
T ss_dssp CSSCCHHHHHH----HHHHHHH-----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHH
T ss_pred CCCcCHHHHHH----HHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Confidence 45679975333 3333321 244447999999999999999999999999999999999999854 356887
Q ss_pred HHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHHHHH
Q 000200 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTT 978 (1871)
Q Consensus 940 ~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~i~~ 978 (1871)
.++..+.. .-+.||+-+++.+..|....+-+.=+..|.+
T Consensus 99 el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~ 138 (163)
T 1x5b_A 99 EVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDPQFSLISA 138 (163)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTCSTTHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 77777754 3369999999999999998764443444433
|
| >1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=93.69 E-value=0.34 Score=51.46 Aligned_cols=112 Identities=14% Similarity=0.215 Sum_probs=83.8
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000200 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1871)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1871)
.+.+.||-.=. +|=.+|+. ++.+-.|.+++|++||+..|.+++..||.++..+..=.|+.|-.. .+-|+
T Consensus 13 ~l~~~dw~~~l----eicD~I~~-----~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl 83 (148)
T 1mhq_A 13 SMSEQDWSAIQ----NFCEQVNT-----DPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFL 83 (148)
T ss_dssp TCSSCCHHHHH----HHHHHHHH-----SSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCCCcCHHHHH----HHHHHHHc-----CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHH
Confidence 34568996533 33333332 133347899999999999999999999999999999999999764 56788
Q ss_pred HHHHHHhccC------chhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000200 939 SDILKCLGDN------KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1871)
Q Consensus 939 ~~il~~l~D~------K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1871)
..+...+.++ -..||+-+++.+..|....+-+.-+..+-..|+
T Consensus 84 ~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~i~~~y~~Lk 132 (148)
T 1mhq_A 84 NELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDIKIRDAYQMLK 132 (148)
T ss_dssp HHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 8888888763 569999999999999998754433333333343
|
| >3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.38 Score=51.19 Aligned_cols=101 Identities=15% Similarity=0.239 Sum_probs=79.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1871)
+.+.||-. +-.|++--| -++.+-.|.+++|++||...|.+++..||.++..+..=.|+.|... .+-|+.
T Consensus 24 l~~~dw~~-------ileicD~I~--~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~ 94 (149)
T 3g2s_A 24 NKELDWAS-------INGFCEQLN--EDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLN 94 (149)
T ss_dssp CSSCCHHH-------HHHHHHHGG--GSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHH
T ss_pred CCCcCHHH-------HHHHHHHHH--CCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 45678863 333443322 2344447999999999999999999999999999999999999754 667888
Q ss_pred HHHHHhccC------chhHHHHHHHHHHHHHHhccchh
Q 000200 940 DILKCLGDN------KKHMRECTLTVLDAWLAAVHLDK 971 (1871)
Q Consensus 940 ~il~~l~D~------K~~vR~aa~~alda~~~~~gl~~ 971 (1871)
.++..+.++ -..||+-+++.+..|.....-++
T Consensus 95 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p 132 (149)
T 3g2s_A 95 ELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEV 132 (149)
T ss_dssp HHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 888888763 56899999999999999875433
|
| >1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.22 Score=54.24 Aligned_cols=111 Identities=13% Similarity=0.205 Sum_probs=83.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1871)
+.+.||-.= -+|-.+|+. ++.+-.|.+++|++||+..|.+++..||.++..+..=.|+.|... .+-|+.
T Consensus 26 l~~~Dw~~i----leicD~I~~-----~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~ 96 (171)
T 1juq_A 26 NRQEDWEYI----IGFCDQINK-----ELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLN 96 (171)
T ss_dssp CSSCCHHHH----HHHHHHHHH-----STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCcCHHHH----HHHHHHHHc-----CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 457899643 333333432 133447899999999999999999999999999999999999864 566888
Q ss_pred HHHHHhccC------chhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000200 940 DILKCLGDN------KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1871)
Q Consensus 940 ~il~~l~D~------K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1871)
.++..+..+ -..||+-+++.+..|....+-+.-+..+-..|+
T Consensus 97 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~~i~~~y~~Lk 144 (171)
T 1juq_A 97 ELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLK 144 (171)
T ss_dssp HHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 888888642 479999999999999999865443333444443
|
| >1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=92.17 E-value=0.42 Score=51.20 Aligned_cols=110 Identities=19% Similarity=0.351 Sum_probs=80.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc-chhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~-DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1871)
+.+.||-.=.|=-| +|+. ++.+..|.+++|++||+ ..|.+++..||.++..+..=.|+.|... .+-++
T Consensus 29 l~~~Dw~~~leicD----~I~~-----~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl 99 (157)
T 1elk_A 29 LQSEDWALNMEICD----IINE-----TEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFV 99 (157)
T ss_dssp CSSCCHHHHHHHHH----HHHH-----SSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCCcCHHHHHHHHH----HHhC-----CCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHH
Confidence 45678975443333 3331 23445799999999997 6899999999999999999999999864 45688
Q ss_pred HH-HHHHhccC---chhHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 000200 939 SD-ILKCLGDN---KKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1871)
Q Consensus 939 ~~-il~~l~D~---K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1871)
.. ++..+.++ ...||+-+++.+..|....+-++-+..|.+..
T Consensus 100 ~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~p~l~~i~~~Y 145 (157)
T 1elk_A 100 ESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPDLTGVVTIY 145 (157)
T ss_dssp HHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCCCcchHHHHHHH
Confidence 87 56666542 34899999999999999876554455444443
|
| >3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.17 E-value=0.31 Score=51.98 Aligned_cols=110 Identities=16% Similarity=0.301 Sum_probs=79.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccc-hhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~D-sNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1871)
+.+.||-. .-+|=.+|+. ++.+--|.+++|++||.. .|.+++..||.++..+..=.|+.|... .+-|+
T Consensus 29 l~~~Dw~~----ileicD~In~-----~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl 99 (152)
T 3rru_A 29 VQTEDWGQ----FMHICDIINT-----TQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFV 99 (152)
T ss_dssp CCSCCHHH----HHHHHHHHHH-----STTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHH
T ss_pred CCCccHHH----HHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhH
Confidence 55678973 3333333332 233447999999999985 488899999999999999999999865 45677
Q ss_pred HH-HHHHhccCc---hhHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 000200 939 SD-ILKCLGDNK---KHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1871)
Q Consensus 939 ~~-il~~l~D~K---~~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1871)
.. ++..+.++- ..||+-+++.+..|....+-++=++.|.++.
T Consensus 100 ~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~p~l~~i~~~Y 145 (152)
T 3rru_A 100 KENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVDVSEVKEVY 145 (152)
T ss_dssp TTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSSCCCHHHHHHH
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 76 555555432 3699999999999999886554455555543
|
| >1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 | Back alignment and structure |
|---|
Probab=91.56 E-value=0.32 Score=55.00 Aligned_cols=100 Identities=16% Similarity=0.304 Sum_probs=77.3
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000200 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1871)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1871)
.+.+.||..=.| |-.+|+. ++.+--|.+++|++||...|.+++..||.++..+..-.|+.|... .+-++
T Consensus 17 ~~~~~dw~~~le----icd~i~~-----~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl 87 (220)
T 1dvp_A 17 LRLEPDWPSILL----ICDEINQ-----KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENC 87 (220)
T ss_dssp TCSSCCHHHHHH----HHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHH
T ss_pred CCCCcCHHHHHH----HHHhhcC-----CCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHH
Confidence 345789986444 3333431 233447999999999999999999999999999999999999654 45577
Q ss_pred HHHHHHhccC-chhHHHHHHHHHHHHHHhccc
Q 000200 939 SDILKCLGDN-KKHMRECTLTVLDAWLAAVHL 969 (1871)
Q Consensus 939 ~~il~~l~D~-K~~vR~aa~~alda~~~~~gl 969 (1871)
..+...+++. -..||+-+++.+..|....+-
T Consensus 88 ~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 88 EMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 7777766653 368999999999999988653
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=91.14 E-value=0.87 Score=55.08 Aligned_cols=144 Identities=15% Similarity=0.126 Sum_probs=103.3
Q ss_pred hccccchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhhccCccch---HHH
Q 000200 1219 QFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKT---LPY 1295 (1871)
Q Consensus 1219 r~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~skv---f~~ 1295 (1871)
-|.+++. --.||-+++..++- +.-.|++|++.|+..+.+..+.=+..+.-..|.-+---++.+... | .-+ ...
T Consensus 33 ~fn~~~~-~~~kc~~~l~kll~-l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~-~e~iLv~Ns 108 (355)
T 3tjz_B 33 VFNETPI-NPRKCAHILTKILY-LINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-A-EDVIIVTSS 108 (355)
T ss_dssp GTTSSSC-CHHHHHHHHHHHHH-HHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-S-SCGGGGHHH
T ss_pred HhcCCCC-cHHHHHHHHHHHHH-HHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-H-HHHHHHHHH
Confidence 4555522 22355656665554 445569999999999999888777777777888777777666665 2 223 335
Q ss_pred HHhhhccCChhhHhHHHHHHHHHHHhhcCcccCccch-HHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHHhcc
Q 000200 1296 ILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGK 1372 (1871)
Q Consensus 1296 l~~glksKN~r~R~Ecl~el~~li~~~G~~v~~~~Ka-l~~ia~~i~drD~~VR~AALn~l~~~y~~~Gd~v~k~~g~ 1372 (1871)
|+.-+.++|.=.|.-.|.-|+++.+.- -... .+.|.+++.|||+.||++|+-|...+|....|-+.+++..
T Consensus 109 l~kDl~~~N~~iR~lALRtL~~I~~~~------m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~ 180 (355)
T 3tjz_B 109 LTKDMTGKEDSYRGPAVRALCQITDST------MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNE 180 (355)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCTT------THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHH
T ss_pred HHhhcCCCcHhHHHHHHHHHhcCCCHH------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 666789999999999999999974211 1223 4889999999999999999999887777777766554443
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=90.91 E-value=1.7 Score=52.51 Aligned_cols=187 Identities=10% Similarity=0.023 Sum_probs=126.1
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhc--CCC--CCCChHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHH---hcccc
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLAST--KRI--APGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARG---LRTHF 360 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~--pKi--~~~dy~eL~~~Lkk~l-~DsNv~vv~~A~~~i~~lA~g---Lr~~F 360 (1871)
-+..-|.+..=..|..|.-.|..|... +.. .=.+.| .+..|-++| ...+..+...|+.++..|+.+ .+..+
T Consensus 131 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G-~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i 209 (354)
T 3nmw_A 131 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG-SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 209 (354)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTT-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCC-CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHH
Confidence 466667777777888888888887642 111 101112 344555543 455678888999999999983 33333
Q ss_pred ccchhhhHHHHHHHhccCCH----HHHHHHHHHHHHHHHh--cCCC----h--hhhHHHHHHHhhcCCchhHHHHHHHHH
Q 000200 361 SGSSRFLLPVLLEKLKEKKP----TVAESLTQTLQAMHKA--GCLN----L--VDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (1871)
Q Consensus 361 ~~y~~~~~~~lLeklKEKK~----~V~eAl~~aLda~~~~--~~~~----l--~~~~e~i~~al~~KnP~vk~etl~~L~ 428 (1871)
.. ....+|++++-++..+. .|++.+..+|-.+..+ ++.. + ...++.+...|.+.++.++.++..-|.
T Consensus 210 ~~-~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 288 (354)
T 3nmw_A 210 CA-VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 288 (354)
T ss_dssp HH-STTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HH-hcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHH
Confidence 21 35689999999987765 4888787888877652 0100 0 124577788889999999999888777
Q ss_pred HHHhhCChhHHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000200 429 FCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1871)
Q Consensus 429 r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge 478 (1871)
.+-.. .......+. ...+|.|+.+|.+.++.+|+.|+.+|..|...-.+
T Consensus 289 nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 289 NLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 66432 222222222 24789999999999999999999999988875443
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=90.64 E-value=30 Score=44.52 Aligned_cols=370 Identities=10% Similarity=0.060 Sum_probs=187.6
Q ss_pred hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccch--hhhccchhhccc--cchhhhHHHHHHHHHHHh
Q 000200 637 QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVA--DIKTRAHAMKCLTTFSEA 712 (1871)
Q Consensus 637 ~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~--~~~l~~lveKlg--D~K~r~~a~e~L~~~aE~ 712 (1871)
.....||++|. ..|..++......|..++... .-.+..+ .-.|+.+|+-|. +..++..|..+|..++-.
T Consensus 48 ~~i~~LV~~L~------s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~ 120 (584)
T 3l6x_A 48 PELPEVIAMLG------FRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG 120 (584)
T ss_dssp CCHHHHHHHTT------CSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSS
T ss_pred ccHHHHHHHHC------CCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHcc
Confidence 34666777763 345677777777787776421 1112222 124567776554 457888888888888742
Q ss_pred ---hchHh-----HHHHHHHhhhhcCChhhHHHHHHHHHHHH--HHhccCcc--chHhHHHHHh--hhcC----------
Q 000200 713 ---VGPGF-----IFERLYKIMKDHKNPKVLSEGILWMVSAV--EDFGVSHL--KLKDLIDFCK--DTGL---------- 768 (1871)
Q Consensus 713 ---~~~~~-----V~~~l~~~~~~~KnPKv~~e~l~wl~~ai--~eFG~~~~--~~K~li~~~k--~~~l---------- 768 (1871)
..-.. .+..++..+....++.++..+...|..+- .+.-..++ -+..|+..+. ..|.
T Consensus 121 ~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~ 200 (584)
T 3l6x_A 121 RDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKP 200 (584)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC---------
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccc
Confidence 11112 24456666555567766655443322221 11000000 1334555431 1111
Q ss_pred -CCccHHHHHHHHHHHHHHHhhhCchhHhhh---hcchHHHHHHHHHHHhcCCCCCCCC--CccccccccccCCCCCCCC
Q 000200 769 -QSSAAATRNATIKLLGALHKFVGPDIKGFL---ADVKPALLSALDAEYEKNPFEGTVV--PKKTVRASESTSSVSSGGS 842 (1871)
Q Consensus 769 -~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l---~dlkpall~~ie~EF~K~~~~~~p~--p~R~~r~~~~~~~~~~~~~ 842 (1871)
.+.++.|+..|..+|..|-.. ++.-+..+ +++-++|+..|....++........ -....+.=... ..
T Consensus 201 ~~~~d~~V~~nAa~~L~NLs~~-~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~------~~ 273 (584)
T 3l6x_A 201 RHIEWESVLTNTAGCLRNVSSE-RSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQ------VH 273 (584)
T ss_dssp -CCCCHHHHHHHHHHHHHHTSS-CHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTT------HH
T ss_pred cccccHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcc------cc
Confidence 234679999999888877431 22223322 4566788888876654431100000 00000000000 00
Q ss_pred CCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCcc-----chHHHHhhhccc-hhHhHHHHHH
Q 000200 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTG-----ELFGGLRGRLYD-SNKNLVMATL 916 (1871)
Q Consensus 843 d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~g-----eL~~aLk~rl~D-sNk~lv~~al 916 (1871)
...|..+ . +.....+ +.. .+. --++.++. +.++.|-.-|.+ .|..+...|+
T Consensus 274 ~e~~~~~---~----~~~~~~~----------~~~-~~~-----~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa 330 (584)
T 3l6x_A 274 REIPQAE---R----YQEAAPN----------VAN-NTG-----TSPARGYELLFQPEVVRIYISLLKESKTPAILEASA 330 (584)
T ss_dssp HHSTTCC---C----------------------------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred ccccchh---h----hhhhccc----------ccc-ccc-----ccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHH
Confidence 0000000 0 0000000 000 000 11233322 123444455543 4788888999
Q ss_pred HHHHHHHHhcChh---HHhhh--hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhh-----HHHHHHHhcccC-
Q 000200 917 ITLGAVASAMGPA---VEKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMV-----PYVTTALTDAKL- 985 (1871)
Q Consensus 917 ~ii~~lA~amG~~---~~k~~--k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~-----~~i~~~L~~~~~- 985 (1871)
..|..|+.+-++. +...+ ...+|.++..|......|+.+|..+|-..........++ +.+...|.++..
T Consensus 331 ~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~ 410 (584)
T 3l6x_A 331 GAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQN 410 (584)
T ss_dssp HHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCS
T ss_pred HHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCccc
Confidence 9999998765432 22232 245899999999999999999999999887765554444 344555544321
Q ss_pred -----CcchHHHHHHHHHHHhccCCCC-c--chhhhhhHHhhhcCCC--CHHHHHHHHHHHHHHHHhc
Q 000200 986 -----GAEGRKDLFDWLSKQLTGLSGF-P--DAAHLLKPASIAMTDK--SSDVRKAAEACIVEILRAG 1043 (1871)
Q Consensus 986 -----~p~~r~e~l~wL~~~l~~~~~~-~--~~~~~~~p~~~~L~Dr--~~dVRkaA~~~L~~~m~~~ 1043 (1871)
+.+....++.-|..-....... . .....+.+++..|.++ ...++++|..+|-.++.+-
T Consensus 411 ~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 411 SSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp GGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 1223333433333222221111 1 1133566788888876 8999999999998776643
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=90.60 E-value=37 Score=46.71 Aligned_cols=157 Identities=17% Similarity=0.247 Sum_probs=93.3
Q ss_pred cHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhc-----------------cCCHHHH------HHHHHHHHHHH
Q 000200 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLK-----------------EKKPTVA------ESLTQTLQAMH 394 (1871)
Q Consensus 338 Nv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklK-----------------EKK~~V~------eAl~~aLda~~ 394 (1871)
++.-...-++|+..+|+++|..|.+|+..+++.+++..+ .|-+.|| ..+..-+..+.
T Consensus 660 ~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i 739 (1023)
T 4hat_C 660 TVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYI 739 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 344444456689999999999999999999999997532 2333222 22334444444
Q ss_pred HhcCCCh--------hhhHHHHHHHhhcCCchhHH-HHHHHHHHHHhhCC---hhHHHHhhhhhHHHHHhhhCC---CCH
Q 000200 395 KAGCLNL--------VDVVEDVKTSVKNKVPLVRS-LTLNWVTFCIETSS---KAAVLKVHKDYVPICMECLND---GTP 459 (1871)
Q Consensus 395 ~~~~~~l--------~~~~e~i~~al~~KnP~vk~-etl~~L~r~l~~~~---~~~~~~~~k~~~~~l~k~l~D---s~~ 459 (1871)
.. +... ..+++-|+.--.+-+|..|. +.+..++-.+.+.. .+.+..++..+...-+..+++ ..|
T Consensus 740 ~~-~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~P 818 (1023)
T 4hat_C 740 SK-ARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYP 818 (1023)
T ss_dssp HH-CSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSH
T ss_pred hc-CCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccCh
Confidence 43 3332 23334444433455677775 55555555555433 222334445555555555555 789
Q ss_pred HHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHH
Q 000200 460 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500 (1871)
Q Consensus 460 ~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~ 500 (1871)
+.|+.=+..+.++..+. +..++ .+.+..-+.+.+++
T Consensus 819 e~r~~ff~ll~~~~~~~----f~~~~-~~~~~~~~~~~~~~ 854 (1023)
T 4hat_C 819 EHRVEFYKLLKVINEKS----FAAFL-ELPPAAFKLFVDAI 854 (1023)
T ss_dssp HHHHHHHHHHHHHHHHC----THHHH-TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC----hHHHH-cCCHHHHHHHHHHH
Confidence 99999999988887763 22233 37766656666654
|
| >3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* | Back alignment and structure |
|---|
Probab=90.31 E-value=1.5 Score=49.81 Aligned_cols=109 Identities=17% Similarity=0.317 Sum_probs=79.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1871)
+.+.||-.=.| |=.+|+ . ++.+-.|.+++|++||...|.+++..||.++..+..=.|+.|... .+-|+.
T Consensus 21 ~~~~dw~~ile----icD~I~---~--~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~ 91 (226)
T 3zyq_A 21 LLETDWESILQ----ICDLIR---Q--GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTME 91 (226)
T ss_dssp CSSCCHHHHHH----HHHHHH---T--TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHH
T ss_pred CCCcCHHHHHH----HHHHHh---C--CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHH
Confidence 45678975333 333332 1 234447999999999999999999999999999999999998764 555666
Q ss_pred HHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHHHHHH
Q 000200 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTA 979 (1871)
Q Consensus 940 ~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~ 979 (1871)
.+...++. ....|++-+++.+..|.....-+.=++.|.+.
T Consensus 92 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~ 132 (226)
T 3zyq_A 92 ELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDT 132 (226)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTCGGGHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 66555543 23579999999999999887544444444443
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=89.51 E-value=1.4 Score=55.31 Aligned_cols=150 Identities=11% Similarity=0.047 Sum_probs=102.5
Q ss_pred hhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchh-h
Q 000200 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSR-F 366 (1871)
Q Consensus 288 ~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~-~ 366 (1871)
+.+...|=+.+|..|=-|--.|-++++..--..|-. ...|. -+|++++..||- .+|+-|+. .
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-----------~~~N~---DLAvRLLCVLAL---DRFGDYVSDq 239 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-----------IRVDS---KLFSKIYEILVT---DKFNDFVDDR 239 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-----------CCCCT---THHHHHHHHHHH---BCCBBCSSSS
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-----------ccccH---HHHHHHHHHHHh---ccccccccCe
Confidence 367778899999999998888887765322111111 22333 666777766653 56777754 2
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhh
Q 000200 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1871)
Q Consensus 367 ~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~ 446 (1871)
++ +-|||.+.++|-++ .+-... -+++..+...+.+...++|-..+.=|... .+.+.. +..+
T Consensus 240 VV-----------APVRETaAQtLGaL-~hLp~e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~-Ld~V 300 (800)
T 3oc3_A 240 TV-----------APVRDAAAYLLSRI-YPLIGP-NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED-KDGL 300 (800)
T ss_dssp CB-----------CHHHHHHHHHHHHH-TTTSCS-CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC-HHHH
T ss_pred ee-----------eehHHHHHHHHHHH-HhCChh-HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH-HHHH
Confidence 33 34899999999999 551122 35555555666888899998777666544 121111 4778
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 447 VPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 447 ~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
+++++.+|.|.+-+||..|+++|-.+.
T Consensus 301 v~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 301 CRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred HHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 999999999999999999999988776
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.83 E-value=7.1 Score=47.14 Aligned_cols=187 Identities=15% Similarity=0.148 Sum_probs=126.3
Q ss_pred CCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhh-cCCCCCCChHHHHHHHHHHhccccHHHHHHHHHH
Q 000200 270 IDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQA 348 (1871)
Q Consensus 270 iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~ 348 (1871)
..||.-.|...|+.... .|.+-= ..=+-+++++..+.-+.. -..+..-.-..++-.+-|++.-.|..+-.+.-=.
T Consensus 16 ~~p~~~~~k~~v~qe~r--~fn~~~--~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLy 91 (355)
T 3tjz_B 16 SNPFQHLEKSAVLQEAR--VFNETP--INPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLT 91 (355)
T ss_dssp ----CCCCHHHHHHHGG--GTTSSS--CCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHH
T ss_pred cCccccchHHHHHHHHH--HhcCCC--CcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 45676566555554321 232210 122234678888766443 2222222345777778888887777666666666
Q ss_pred HHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHH
Q 000200 349 IGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (1871)
Q Consensus 349 i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~ 428 (1871)
+..+++- ..-+-++.+.+..-+.++.+-+|..+..+|-.+... .-++++...+..++.|++|-||..++.-..
T Consensus 92 l~~~~~~-----~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~ 164 (355)
T 3tjz_B 92 IKEMSCI-----AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQAIERYMKQAIVDKVPSVSSSALVSSL 164 (355)
T ss_dssp HHHHTTT-----SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHhCCC-----HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 6666665 344669999999999999999998877777777543 346777788889999999999999999888
Q ss_pred HHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000200 429 FCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1871)
Q Consensus 429 r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1871)
+.+...+. +++.++..+..+++|+++-|--.|..+|-.+
T Consensus 165 kL~~~~pe-----~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei 203 (355)
T 3tjz_B 165 HLLKCSFD-----VVKRWVNEAQEAASSDNIMVQYHALGLLYHV 203 (355)
T ss_dssp HHTTTCHH-----HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHhccCHH-----HHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 88865422 2467899999999999999986555544444
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.47 E-value=4 Score=51.07 Aligned_cols=184 Identities=10% Similarity=0.026 Sum_probs=123.1
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhc--CCCCC--CChHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHH---hcccc
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLAST--KRIAP--GDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARG---LRTHF 360 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~--pKi~~--~dy~eL~~~Lkk~l-~DsNv~vv~~A~~~i~~lA~g---Lr~~F 360 (1871)
-+..-|.+..=.-|..|.-.|..|... +.... .+. ..+..|-.+| ...+..+...|+.++..|+.+ .+..+
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~-GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I 325 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 325 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHT-THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHc-CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 366666666666677777777777532 11100 111 2344555554 456788899999999999983 33444
Q ss_pred ccchhhhHHHHHHHhccCCHH----HHHHHHHHHHHHHHh--cCCC-hh-----hhHHHHHHHhhcCCchhHHHHHHHHH
Q 000200 361 SGSSRFLLPVLLEKLKEKKPT----VAESLTQTLQAMHKA--GCLN-LV-----DVVEDVKTSVKNKVPLVRSLTLNWVT 428 (1871)
Q Consensus 361 ~~y~~~~~~~lLeklKEKK~~----V~eAl~~aLda~~~~--~~~~-l~-----~~~e~i~~al~~KnP~vk~etl~~L~ 428 (1871)
.. ....+|++++-+...+.. |++.+..+|-.+..+ ++.. -. ..++.+...|.+.++.++.++..-|.
T Consensus 326 ~~-~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 326 CA-VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp HH-STTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HH-hcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 21 256899999999887764 888788888877652 1100 11 23566778889999999999888777
Q ss_pred HHHhhCChhHHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000200 429 FCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1871)
Q Consensus 429 r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1871)
.+-.. .......+. ...+|.|+.+|...++.+|+.|+.+|..|...
T Consensus 405 nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 405 NLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 66532 222222222 24789999999999999999999999888754
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=88.31 E-value=0.53 Score=54.03 Aligned_cols=187 Identities=11% Similarity=0.057 Sum_probs=106.5
Q ss_pred HHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcch
Q 000200 723 YKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVK 802 (1871)
Q Consensus 723 ~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlk 802 (1871)
+..+..+.+|.|+..+...+ + ...+..+ +.+.|+.||.++..-|. .+.|..++.|..
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l------------~----~~~l~~L-~~D~~~~VR~~aA~~L~------~~~L~~ll~D~d 111 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYS------------P----VEALTPL-IRDSDEVVRRAVAYRLP------REQLSALMFDED 111 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS------------C----GGGGGGG-TTCSSHHHHHHHHTTSC------SGGGGGTTTCSC
T ss_pred HHHHhcCCCHHHHHHHHHhC------------C----HHHHHHH-ccCcCHHHHHHHHHHCC------HHHHHHHHcCCC
Confidence 44445788999998877643 1 1224556 89999999999986421 233344444433
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHH-HHhhcCCCChHHHHHHHHHHHHHH
Q 000200 803 PALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPT-LVKSLESPDWKVRLESIEAVNKIL 881 (1871)
Q Consensus 803 pall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~-l~~~l~d~~WK~RkEaLe~v~~il 881 (1871)
+......=.. ++.+ +..-++|++|.+|.++...+
T Consensus 112 ~~VR~~aA~~-----------------------------------------l~~~~L~~L~~D~d~~VR~~aA~~l---- 146 (244)
T 1lrv_A 112 REVRITVADR-----------------------------------------LPLEQLEQMAADRDYLVRAYVVQRI---- 146 (244)
T ss_dssp HHHHHHHHHH-----------------------------------------SCTGGGGGGTTCSSHHHHHHHHHHS----
T ss_pred HHHHHHHHHh-----------------------------------------CCHHHHHHHHcCCCHHHHHHHHHhc----
Confidence 3222221111 1111 22336788888888887631
Q ss_pred HHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHH
Q 000200 882 EEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961 (1871)
Q Consensus 882 ~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~ald 961 (1871)
. .+ .|..-++|.|..|-..++.- ++. +-+...++|....||.+++..+
T Consensus 147 -------~----~~---~l~~l~~D~d~~VR~~aa~~-------l~~----------~ll~~ll~D~d~~VR~aaa~~l- 194 (244)
T 1lrv_A 147 -------P----PG---RLFRFMRDEDRQVRKLVAKR-------LPE----------ESLGLMTQDPEPEVRRIVASRL- 194 (244)
T ss_dssp -------C----GG---GGGGTTTCSCHHHHHHHHHH-------SCG----------GGGGGSTTCSSHHHHHHHHHHC-
T ss_pred -------C----HH---HHHHHHcCCCHHHHHHHHHc-------CCH----------HHHHHHHcCCCHHHHHHHHHhC-
Confidence 1 12 23344578888777666542 221 2233556888888888888763
Q ss_pred HHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHH
Q 000200 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (1871)
Q Consensus 962 a~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1871)
+. +.+...+.++ +++.|..+..-+ . .+.+..|.|.+..||.+|.+.|+
T Consensus 195 ------~~----~~L~~Ll~D~--d~~VR~~aa~~l----~------------~~~L~~L~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 195 ------RG----DDLLELLHDP--DWTVRLAAVEHA----S------------LEALRELDEPDPEVRLAIAGRLG 242 (244)
T ss_dssp ------CG----GGGGGGGGCS--SHHHHHHHHHHS----C------------HHHHHHCCCCCHHHHHHHHCCC-
T ss_pred ------CH----HHHHHHHcCC--CHHHHHHHHHcC----C------------HHHHHHccCCCHHHHHHHHHHhC
Confidence 21 2333334544 467777766542 1 24444568888888888876654
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=88.30 E-value=5.9 Score=47.76 Aligned_cols=169 Identities=11% Similarity=0.092 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhhhcC---CCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH----hccccccchhhhHHHHHH
Q 000200 301 ERKDAVAELTKLASTK---RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG----LRTHFSGSSRFLLPVLLE 373 (1871)
Q Consensus 301 eRkEaLe~l~~l~~~p---Ki~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~g----Lr~~F~~y~~~~~~~lLe 373 (1871)
-|.+|...|..|+... |..-..++..+..|-.+|...|..+...|+.+|..|+.+ -|..+. -...+|++++
T Consensus 100 ~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~--~~G~Ip~Lv~ 177 (354)
T 3nmw_A 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLR--EVGSVKALME 177 (354)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHH--HTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHH--HCCCHHHHHH
Confidence 4677777777776322 111112466788888888878889999999999999875 122222 1356899999
Q ss_pred Hh-ccCCHHHHHHHHHHHHHHHHhcCCC----h---hhhHHHHHHHhhcCCch----hHHHHHHHHHHHHhh---CChhH
Q 000200 374 KL-KEKKPTVAESLTQTLQAMHKAGCLN----L---VDVVEDVKTSVKNKVPL----VRSLTLNWVTFCIET---SSKAA 438 (1871)
Q Consensus 374 kl-KEKK~~V~eAl~~aLda~~~~~~~~----l---~~~~e~i~~al~~KnP~----vk~etl~~L~r~l~~---~~~~~ 438 (1871)
-+ +.....+++.+..||-.+... |.. + ...++.+...|.+..+. ++.+++.. -+.+.. .....
T Consensus 178 lL~~~~~~~~~~~A~~aL~nLs~~-~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~a-L~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 178 CALEVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGI-LRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHH-HHHHHHHHTTCHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcc-ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHH-HHHHHhhccCCHHH
Confidence 75 556788888888888777642 211 1 13456667777777663 66655543 344443 22222
Q ss_pred HHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 439 VLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 439 ~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
...+. ...+|.++.+|.+.+.+|++.|+.+|..+.
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 22222 237899999999999999999999988775
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=87.08 E-value=27 Score=40.24 Aligned_cols=127 Identities=12% Similarity=0.141 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCC
Q 000200 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (1871)
Q Consensus 300 keRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK 379 (1871)
.+|.+.|.++..++-+. .+.=|.+++..+-....|++..|-...+.-|+..++. + ..++..+++.+..-+.|.-
T Consensus 30 ~~kl~~L~qa~el~~~~--dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~---k-~~l~~~~l~~L~~Ll~d~d 103 (257)
T 3gs3_A 30 STKCELLAKVQETVLGS--CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV---K-VELLPHVINVVSMLLRDNS 103 (257)
T ss_dssp HHHHHHHHHHHHHHTTT--TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHcc--CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcCCC
Confidence 69999999999864321 2345888999998887799999888888888777632 2 2478889999999999999
Q ss_pred HHHHHHHHHHHHHHHHh----cCCC------hh-------hhHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 000200 380 PTVAESLTQTLQAMHKA----GCLN------LV-------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1871)
Q Consensus 380 ~~V~eAl~~aLda~~~~----~~~~------l~-------~~~e~i~~al~~KnP~vk~etl~~L~r~l~ 432 (1871)
++|+..+..|...++.. -|.+ .+ .+-+.|+.-+.+.|..+|..+++|+.+++-
T Consensus 104 ~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 104 AQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 99999888888777653 1111 12 233556667789999999999999999984
|
| >1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=86.42 E-value=2.4 Score=44.88 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=74.5
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~l 371 (1871)
+.+.+|.-=.|.-|.+.. . +..=.+.+++|+++|...|.+++..|+..++.+.+-=|..|... .+-++..|
T Consensus 14 l~~~dw~~~leicD~I~~---~----~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL 86 (148)
T 1mhq_A 14 MSEQDWSAIQNFCEQVNT---D----PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNEL 86 (148)
T ss_dssp CSSCCHHHHHHHHHHHHH---S----SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHc---C----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHH
Confidence 345677554444443322 1 11245889999999999999999999999999999999999766 47788888
Q ss_pred HHHhccC------CHHHHHHHHHHHHHHHHh
Q 000200 372 LEKLKEK------KPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 372 LeklKEK------K~~V~eAl~~aLda~~~~ 396 (1871)
...++.| -..|++-+.+.+..|...
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 87 IKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 7777764 568999999999999875
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.26 E-value=7.7 Score=48.49 Aligned_cols=170 Identities=11% Similarity=0.087 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhhhcCC---CCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHHHh-
Q 000200 302 RKDAVAELTKLASTKR---IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKL- 375 (1871)
Q Consensus 302 RkEaLe~l~~l~~~pK---i~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~lLekl- 375 (1871)
+.+|...|..|+.... ..-..++..+..|-.+|...|..+...|+.+|..|+.+-....... -...+|++++-+
T Consensus 217 ~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl 296 (458)
T 3nmz_A 217 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL 296 (458)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHh
Confidence 6677777777764321 1001246678888888888888999999999999986411111111 135689999975
Q ss_pred ccCCHHHHHHHHHHHHHHHHhcCC----Ch---hhhHHHHHHHhhcCCch----hHHHHHHHHHHHHhh---CChhHHHH
Q 000200 376 KEKKPTVAESLTQTLQAMHKAGCL----NL---VDVVEDVKTSVKNKVPL----VRSLTLNWVTFCIET---SSKAAVLK 441 (1871)
Q Consensus 376 KEKK~~V~eAl~~aLda~~~~~~~----~l---~~~~e~i~~al~~KnP~----vk~etl~~L~r~l~~---~~~~~~~~ 441 (1871)
......+++.+..||-.+... |. .+ ...++.+...|.+..+. ++.++...| +.+.. ........
T Consensus 297 ~s~~~~v~~~A~~aL~nLs~~-~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL-~nLs~~~a~~~~~~~~ 374 (458)
T 3nmz_A 297 EVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL-RNVSSLIATNEDHRQI 374 (458)
T ss_dssp TCCSHHHHHHHHHHHHHHHHH-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHH-HHHHHHHTTCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHccC-CHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHH-HHHHhcccCCHHHHHH
Confidence 446788888888888877653 21 11 13455666777776653 676655443 44443 22222222
Q ss_pred hh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 442 VH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 442 ~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
+. ...+|.++.+|.+.+.+|++.|+.+|+.+.
T Consensus 375 i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp HHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 22 247899999999999999999999998875
|
| >3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* | Back alignment and structure |
|---|
Probab=85.98 E-value=3.2 Score=44.03 Aligned_cols=96 Identities=15% Similarity=0.149 Sum_probs=74.0
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~l 371 (1871)
+.+.+|.-=.|.-|.+ -+. +..=.+.+++|+++|...|.+++..|+..++.+.+-=|..|... .+-++..|
T Consensus 24 l~~~dw~~ileicD~I---~~~----~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL 96 (149)
T 3g2s_A 24 NKELDWASINGFCEQL---NED----FEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNEL 96 (149)
T ss_dssp CSSCCHHHHHHHHHHG---GGS----SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHH---HCC----CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHH
Confidence 4557786433333332 112 22346899999999999999999999999999999999999765 56778888
Q ss_pred HHHhccC------CHHHHHHHHHHHHHHHHh
Q 000200 372 LEKLKEK------KPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 372 LeklKEK------K~~V~eAl~~aLda~~~~ 396 (1871)
...+++| -..|++-+.+.+..|...
T Consensus 97 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 97 IKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 8888764 468999999999999875
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=85.39 E-value=2.2 Score=44.73 Aligned_cols=96 Identities=16% Similarity=0.203 Sum_probs=72.3
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccch--hhhHHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVL 371 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~--~~~~~~l 371 (1871)
+.+.+|.-=.|.-|.+ +-.+..=.+.+++|+|+|...|.+++..|+..++.+.+-=|..|...+ +-++..|
T Consensus 18 l~~~dw~~ileicD~I-------~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el 90 (140)
T 3ldz_A 18 NTAEDWGLILDICDKV-------GQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEV 90 (140)
T ss_dssp SSSCCHHHHHHHHHHH-------TTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHH-------HCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHH
Confidence 5667786433333322 122333568999999999999999999999999999999999997553 5667776
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHh
Q 000200 372 LEKLKEKKPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 372 LeklKEKK~~V~eAl~~aLda~~~~ 396 (1871)
...++..-+.|++-+.+.+.+|...
T Consensus 91 ~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 91 SNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHH
Confidence 6666666778999999999999764
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=85.13 E-value=26 Score=42.76 Aligned_cols=127 Identities=14% Similarity=0.119 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCC
Q 000200 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (1871)
Q Consensus 300 keRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK 379 (1871)
.+|.+.|.++.+|+=+. .+.-|.+++..|-....|.|+.|-.-.+..|+..++. . ..++..+++.+..-+.|.-
T Consensus 40 ~~Kl~~L~q~~EL~l~~--dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~-~el~~~~l~~L~~LL~d~d 113 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK--DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---D-IELLLKLIANLNMLLRDEN 113 (386)
T ss_dssp THHHHHHHHHHHHHHTT--CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcCCC
Confidence 58999999999964221 2234778888888888899999999999999888863 2 2357788888888888999
Q ss_pred HHHHHHHHHHHHHHHHh----cC--CC-----------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 000200 380 PTVAESLTQTLQAMHKA----GC--LN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1871)
Q Consensus 380 ~~V~eAl~~aLda~~~~----~~--~~-----------l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~ 432 (1871)
++|+..+..|...++.. -| -+ +..+-+.|+..+.+.|..||..+++|+.+++-
T Consensus 114 ~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 114 VNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 99999888888777632 01 11 22334567777889999999999999999984
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.00 E-value=1.4e+02 Score=41.60 Aligned_cols=225 Identities=16% Similarity=0.170 Sum_probs=130.2
Q ss_pred hhhHHHHHHHHHHHhh---chHhHHHHHHHhhhh----------------------cCChh-hHHHHHH-HHHHHHHHh-
Q 000200 698 TRAHAMKCLTTFSEAV---GPGFIFERLYKIMKD----------------------HKNPK-VLSEGIL-WMVSAVEDF- 749 (1871)
Q Consensus 698 ~r~~a~e~L~~~aE~~---~~~~V~~~l~~~~~~----------------------~KnPK-v~~e~l~-wl~~ai~eF- 749 (1871)
.|....+++..+|... +..++...+...+.. ..+|. ...|+.. .+..+++.+
T Consensus 439 ~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~ 518 (1204)
T 3a6p_A 439 SRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMF 518 (1204)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 6888888999888765 666666666554432 01121 1223322 222222322
Q ss_pred --cc-Cccc---hHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCC
Q 000200 750 --GV-SHLK---LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (1871)
Q Consensus 750 --G~-~~~~---~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~ 823 (1871)
.- ..++ ...++..+.. +...+|.+|...+.++|++..|+.. -+.-+...|+.=|..+.+. ++.
T Consensus 519 ~~~e~~~l~~~~~~~Ll~~ll~--~~~~~p~l~~~~i~~l~~l~~~~~~--------~p~~L~~vL~~ll~~l~~~-~~~ 587 (1204)
T 3a6p_A 519 RTLNREEIPVNDGIELLQMVLN--FDTKDPLILSCVLTNVSALFPFVTY--------RPEFLPQVFSKLFSSVTFE-TVE 587 (1204)
T ss_dssp HHSCTTCCCHHHHHHHHHHHHH--CCCSCHHHHHHHHHHHHHHGGGGGT--------CGGGHHHHHHHHHHHHHCC-TTC
T ss_pred cccccccccHHHHHHHHHHHHh--CCCCChHHHHHHHHHHHHHHHHHhc--------CchHHHHHHHHHHHhhccC-Ccc
Confidence 10 2222 2445555432 3457999999999999999888752 1222333334444443221 111
Q ss_pred CccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhh-
Q 000200 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG- 902 (1871)
Q Consensus 824 p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~- 902 (1871)
..+.. + ++.+=.+|..|-.++..|+.++...+-|-. ..|...+..
T Consensus 588 ~~~~~------------------~---------------~~~~k~vr~~a~~al~~L~~~~~~~L~p~~-~~i~~~~~~~ 633 (1204)
T 3a6p_A 588 ESKAP------------------R---------------TRAVRNVRRHACSSIIKMCRDYPQLVLPNF-DMLYNHVKQL 633 (1204)
T ss_dssp STTSC------------------C---------------CHHHHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHH
T ss_pred ccccc------------------c---------------cHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHH
Confidence 11110 0 001224688888999999988756666653 666665544
Q ss_pred ----h-ccchhHhHHHHHHHHHHHHHHhcChhH--HhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhh
Q 000200 903 ----R-LYDSNKNLVMATLITLGAVASAMGPAV--EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMV 973 (1871)
Q Consensus 903 ----r-l~DsNk~lv~~al~ii~~lA~amG~~~--~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~ 973 (1871)
. +.+.++.....|+-++ |..+++.- ..|...+++++++.+.+.. ++. +......++..+|++..-
T Consensus 634 l~~~~~l~~~e~~~L~eal~~i---a~~~~~~~~~~~~l~~ll~P~~~~w~~~~--~~~-~~s~~~~f~~~~G~~~~~ 705 (1204)
T 3a6p_A 634 LSNELLLTQMEKCALMEALVLI---SNQFKNYERQKVFLEELMAPVASIWLSQD--MHR-VLSDVDAFIAYVGTDQKS 705 (1204)
T ss_dssp HHSTTTSCHHHHHHHHHHHHHH---HGGGCCHHHHHHHHHHHHHHHHHHHSCHH--HHH-HHHCHHHHHHHHTSSCC-
T ss_pred HhCcccccHHHHHHHHHHHHHH---hccCCCHHHHHHHHHHHHHHHHHHHccHH--HHH-hhcCHHHHHHHhCCCCCc
Confidence 4 7788888888887665 65566532 3467889999999997533 444 455556777778877653
|
| >1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* | Back alignment and structure |
|---|
Probab=85.00 E-value=2.5 Score=45.86 Aligned_cols=96 Identities=15% Similarity=0.138 Sum_probs=74.7
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~l 371 (1871)
+.+.+|.-=.|.-|.+.. . +..-.+.+++|+++|...|.+|+..|+..++.+.+-=|+.|... .+-++..|
T Consensus 26 l~~~Dw~~ileicD~I~~---~----~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL 98 (171)
T 1juq_A 26 NRQEDWEYIIGFCDQINK---E----LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNEL 98 (171)
T ss_dssp CSSCCHHHHHHHHHHHHH---S----TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHc---C----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHH
Confidence 456778654444333322 1 22356899999999999999999999999999999999999865 45678888
Q ss_pred HHHhccC------CHHHHHHHHHHHHHHHHh
Q 000200 372 LEKLKEK------KPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 372 LeklKEK------K~~V~eAl~~aLda~~~~ 396 (1871)
...++.| -..|++-+.+.+..|...
T Consensus 99 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 99 IKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 8777654 379999999999999876
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=84.51 E-value=2.1 Score=56.13 Aligned_cols=87 Identities=16% Similarity=0.157 Sum_probs=67.3
Q ss_pred hhhhhhccChHHHHHHHHHHHHhhhcCCCCC-CChHHHHH-HHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hh
Q 000200 290 FWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCR-TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SR 365 (1871)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~-~dy~eL~~-~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~ 365 (1871)
+.++|.|+...+|..|+..|..|+.++.-.. -.+..++. .|..++.|+|..|+..|+.+++.|+..-|.++..| ..
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~ 118 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRL 118 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHc
Confidence 6788999999999999999999886544222 12333454 56888899999999999999999998887776555 45
Q ss_pred hhHHHHHHHhc
Q 000200 366 FLLPVLLEKLK 376 (1871)
Q Consensus 366 ~~~~~lLeklK 376 (1871)
.++++|+.-|+
T Consensus 119 ~il~~L~~~l~ 129 (684)
T 4gmo_A 119 DVLTAIEHAAK 129 (684)
T ss_dssp THHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 57787776654
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.85 E-value=1.4e+02 Score=39.67 Aligned_cols=301 Identities=11% Similarity=0.099 Sum_probs=162.3
Q ss_pred hHhHHHHHHHhhhh-cCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCch
Q 000200 715 PGFIFERLYKIMKD-HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD 793 (1871)
Q Consensus 715 ~~~V~~~l~~~~~~-~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~ 793 (1871)
-.||.++.++.+.. .|+..++.-++..|+.+-..-+.....+..+++.+++. |.+.+...|.-|+..| .|.-+.+.
T Consensus 290 R~~I~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~-L~~~~~~~~~~AvEgL--aYLSl~~~ 366 (778)
T 3opb_A 290 RTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINA-ISRRIVPKVEMSVEAL--AYLSLKAS 366 (778)
T ss_dssp HHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHH-TTTCCHHHHHHHHHHH--HHHTTSSH
T ss_pred HHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH-HhcCCccHHHHHHHHH--HHHhCCHH
Confidence 45555555554432 46778888888888887665555667888899999997 9988777788888877 46678999
Q ss_pred hHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcccc--------ccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCC
Q 000200 794 IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV--------RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESP 865 (1871)
Q Consensus 794 l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~--------r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~ 865 (1871)
+|..|.+-...+...++- . +.+...+ . .-++ ...+...........+.+=.+-+ .|. ..-.|.
T Consensus 367 VKe~L~~d~~~L~~Lv~l-l-k~~~d~s-~-~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~--~p~---~~~~d~ 437 (778)
T 3opb_A 367 VKIMIRSNESFTEILLTM-I-KSQKMTH-C-LYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXX--XPA---ADKVGA 437 (778)
T ss_dssp HHHHHHHCHHHHHHHHHH-H-TTTCCTT-H-HHHHHHHHHHTTCCCCCCCCCCC-----------------------CCT
T ss_pred HHHHHHhCHHHHHHHHHH-H-hCCCCch-H-HHHHHHHHHHhcCCCcccchhhhhhhhhhhhcccc--Ccc---cCcccc
Confidence 999885444433333221 1 1111000 0 0000 00000000000000000000000 010 001111
Q ss_pred ChHHHHHHHHH-HHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhHHHH
Q 000200 866 DWKVRLESIEA-VNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLSDIL 942 (1871)
Q Consensus 866 ~WK~RkEaLe~-v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~~il 942 (1871)
.+ ...+.+.+ ..+++- . ...+..|...++..+.++..+|+.++..|+.- +..+.. ..+.+++++
T Consensus 438 ~~-~~~~~v~~~~~~~l~-------e---aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d--~~~R~~lvqqGal~~LL 504 (778)
T 3opb_A 438 EK-AAKEDILLFNEKYIL-------R---TELISFLKREMHNLSPNCKQQVVRIIYNITRS--KNFIPQLAQQGAVKIIL 504 (778)
T ss_dssp HH-HHHHHHHHHHHHHTT-------T---TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS--GGGHHHHHHTTHHHHHH
T ss_pred cc-cchHHHHHHHHHHHH-------H---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHH
Confidence 12 22222222 222222 2 23788888888888889999999999999744 444433 236789999
Q ss_pred HHhccCchh---HHHHHHHHHHHHHHhccchh---------hhHHHHHHHhc-ccCC----------c-chHHHHHHHHH
Q 000200 943 KCLGDNKKH---MRECTLTVLDAWLAAVHLDK---------MVPYVTTALTD-AKLG----------A-EGRKDLFDWLS 998 (1871)
Q Consensus 943 ~~l~D~K~~---vR~aa~~alda~~~~~gl~~---------~~~~i~~~L~~-~~~~----------p-~~r~e~l~wL~ 998 (1871)
..|.+.... +|..|..||-...-.+.-.. .++.+..-|.. +... + ..+.|.+.=|.
T Consensus 505 ~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALT 584 (778)
T 3opb_A 505 EYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALT 584 (778)
T ss_dssp HHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHH
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHH
Confidence 999888655 89999999988886553222 23344444431 1100 0 11556655544
Q ss_pred HHhccCCCC--cc-----hh--hhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 999 KQLTGLSGF--PD-----AA--HLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 999 ~~l~~~~~~--~~-----~~--~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
.|...+.. .+ .. ..+..+...|.+-+..||++|.+++--++.
T Consensus 585 -NLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 585 -NLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635 (778)
T ss_dssp -HHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT
T ss_pred -HHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 34444321 11 11 123446667777788999999988887775
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=82.33 E-value=4.9 Score=43.26 Aligned_cols=96 Identities=18% Similarity=0.237 Sum_probs=73.1
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccch--hhhHHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVL 371 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~--~~~~~~l 371 (1871)
+.+.+|.-=.|.-|.+.. . +..=.+.+++|+++|...|.+++..|+..++.+.+--|+.|...+ +-++..|
T Consensus 28 ~~~~Dw~~~leicD~I~~---~----~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el 100 (163)
T 1x5b_A 28 NTTEDWSLIMDICDKVGS---T----PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEV 100 (163)
T ss_dssp CSSCCHHHHHHHHHHHHH---S----SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhC---C----CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 456788765544444322 1 223468999999999999999999999999999999999998553 4477777
Q ss_pred HHHhcc-CCHHHHHHHHHHHHHHHHh
Q 000200 372 LEKLKE-KKPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 372 LeklKE-KK~~V~eAl~~aLda~~~~ 396 (1871)
...++. .-+.|++-+.+.+..|...
T Consensus 101 ~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 101 RAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 666653 2368999999999999875
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.56 E-value=13 Score=49.23 Aligned_cols=171 Identities=11% Similarity=0.122 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHhh--hcCCCCCCCh--HHHHHHHHHHhc-cccH-------------HHHHHHHHHHHHHHHH-------
Q 000200 301 ERKDAVAELTKLA--STKRIAPGDF--TEVCRTLKKLIT-DVNI-------------AVAVEAIQAIGNLARG------- 355 (1871)
Q Consensus 301 eRkEaLe~l~~l~--~~pKi~~~dy--~eL~~~Lkk~l~-DsNv-------------~vv~~A~~~i~~lA~g------- 355 (1871)
-|..|..+|..|+ .+|.+.-+.| -+.++-|..+|. |.+. .-...|+.+|+.||..
T Consensus 517 ~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~ 596 (778)
T 3opb_A 517 IRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEE 596 (778)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchH
Confidence 4788888888754 3455432112 267888888887 4443 2366899999999985
Q ss_pred hccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCh-hhh-----------HHHHHHHhhcCCchhHHHH
Q 000200 356 LRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-VDV-----------VEDVKTSVKNKVPLVRSLT 423 (1871)
Q Consensus 356 Lr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l-~~~-----------~e~i~~al~~KnP~vk~et 423 (1871)
+|...-++ ...+|.+.+-+.+-+..|+.|+.+++..++.. ...+ .++ ++-+...+...++.+|..+
T Consensus 597 ~r~~Ii~~-~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AA 674 (778)
T 3opb_A 597 VCKHIVST-KVYWSTIENLMLDENVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAV 674 (778)
T ss_dssp HHHHHHHS-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHHh-cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHH
Confidence 34433221 24789999999999999999999999999864 2222 122 3456677889999999999
Q ss_pred HHHHHHHHhhCChhHHHHhhh--hhHHHHHhhhCC--CCHHHHHHHHHHHHHHHH
Q 000200 424 LNWVTFCIETSSKAAVLKVHK--DYVPICMECLND--GTPEVRDAAFSVLAAIAK 474 (1871)
Q Consensus 424 l~~L~r~l~~~~~~~~~~~~k--~~~~~l~k~l~D--s~~~VR~aA~~~l~~lmk 474 (1871)
...|+.+-...+ .....++. ..+..++..+.| .++++|..+..++--+..
T Consensus 675 agALAnLts~~~-~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 675 AAIFANIATTIP-LIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHCH-HHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCh-HHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 977776544332 22222222 477888999999 899999999999999886
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1871 | ||||
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-15 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 1e-13 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-11 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 6e-11 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-09 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 3e-07 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 2e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 9e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 0.001 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 5e-05 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 4e-04 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 0.001 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.001 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.001 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.4 bits (194), Expect = 3e-15
Identities = 153/1079 (14%), Positives = 314/1079 (29%), Gaps = 102/1079 (9%)
Query: 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT 381
+V + + KL+ D N V A++ +G L ++ + ++ L + K
Sbjct: 42 SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVETIVDTLCTNMLSDKEQ 98
Query: 382 VAESLTQTLQAM------HKAGCLNLVDVVEDV-----KTSVKNKVPLVRSLTLNWVTFC 430
+ + + L+ + +G +V + + K + V+ L+ +
Sbjct: 99 LRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 158
Query: 431 IETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490
+ ++ H + + L VR L + S G IE L
Sbjct: 159 LSRQGGL-LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLS 217
Query: 491 VRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSA 550
S + S G + + F +
Sbjct: 218 ELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFE 277
Query: 551 APASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVG 608
+ + V P + K T +D + E +++ D
Sbjct: 278 SFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYS 337
Query: 609 QLKSAVWKERLEAISSLRQQV-EAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 667
WK R A L V + L + + + + E+NV+ +V
Sbjct: 338 DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKA-----DVF 392
Query: 668 NYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK 727
+ + + LC E+ T + I + L+K MK
Sbjct: 393 HAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQ--SQVPN---------IVKALHKQMK 441
Query: 728 DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGL--QSSAAATRNATIKLLGA 785
+ K+ K + V + + ++ L +SS++ + + L
Sbjct: 442 E-KSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYV 500
Query: 786 LHKFVGPD-IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDG 844
+ P + + P +++ + + K E +V ++ V+ SS +
Sbjct: 501 ILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATP 560
Query: 845 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL 904
+ +K L++ D E E + + + +L L+ L
Sbjct: 561 YIK-----DLFTCTIKRLKAADI--DQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFL 613
Query: 905 -YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECTLTVLDA 962
N+ + T+ L +A + + G IL N++ ++ TL+ LD
Sbjct: 614 ERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDI 673
Query: 963 WLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMT 1022
+ + D + +L L D S +T
Sbjct: 674 LIKNYSDSLT------------------AAMIDAVLDELPPLISESDMHVSQMAISF-LT 714
Query: 1023 DKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSK 1082
+ + IL L+ A+ + + + G + + +
Sbjct: 715 TLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLR 774
Query: 1083 SSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDR 1142
+ S S ++ + ++ + A + AV Q + +VK+S D
Sbjct: 775 MLTGPVYSQSTALTHKQSYYSIAKCV----AALTRACPKEGPAVVGQFIQDVKNSRSTDS 830
Query: 1143 ERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIR 1202
R+ + + E+ + + + +L +L E ++
Sbjct: 831 IRL---------LALLSLGEVGHHIDLSGQLELKSVIL-----------EAFSSPSEEVK 870
Query: 1203 KDIIEVLDILLRW-------FVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAA 1255
L + FVLQ S +L L E+ + G +
Sbjct: 871 SAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVG---LKPYVE 927
Query: 1256 VFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLV 1315
L++ E R + E ++ T LP + L S ++ R V V
Sbjct: 928 NIWALLLKHCECAEEGTRNVVAECLGKLTLIDPET-LLPRLKGYLISGSSYARSSVVTAV 986
Query: 1316 GFLIDHHGAEISGQLKSL-QIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKL 1373
F I H I LK+ + D +R+ AL T + I + +
Sbjct: 987 KFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1045
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.4 bits (181), Expect = 1e-13
Identities = 135/1055 (12%), Positives = 295/1055 (27%), Gaps = 111/1055 (10%)
Query: 18 DRLLHKNWKVRNEANIDL-AALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDAL 76
+++ + R A DL L D+ R++ + K + D N VQ+ A+ L
Sbjct: 10 EKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCL 69
Query: 77 IA-YLKAADADAGRYAKEVCDA----------IAAKCLTGRPKTVEKAQAVFMLWVELEA 125
K + +C I++ L + A + L +
Sbjct: 70 GPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-- 127
Query: 126 VDVFLDVMEKAIKNKVAKAV-VPAIDVMFQALSEFGAKIIPP-KRILKMLPELFDHQDQN 183
+ AI + +V + A+D+M LS G ++ IL L
Sbjct: 128 CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLA 187
Query: 184 VRASSKGLTLELCRWIGKDPVKTILFEKMRD-TMKKELEVELVNVSGTARPTRKIRAEQD 242
VR + L G ++ + + + + + A +R+
Sbjct: 188 VRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIG 247
Query: 243 KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSER 302
+ L + + ++ + + E + + P + +K +
Sbjct: 248 EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPN 307
Query: 303 KDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG 362
+ E + D + D++ V A + + +
Sbjct: 308 YNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPE 367
Query: 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL----------------------- 399
+ + P L+ + KE++ V + ++ K
Sbjct: 368 FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS 427
Query: 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459
+ ++V+ + +K K R N +T + A+ + VP + LND +
Sbjct: 428 QVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV-LPGALTQHIPVLVPGIIFSLNDKSS 486
Query: 460 --EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQ 517
++ A S L I + + ++ L + + + A + V+
Sbjct: 487 SSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSE-ALLVTQQLVK 545
Query: 518 TSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKL 577
+ +++ + + K+ G S L
Sbjct: 546 VIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDL 605
Query: 578 T----------EAPEDVEPSEMSLEEIESRLGSLIPADTVGQL--------KSAVWKERL 619
+ + +L I + +G+ + +L
Sbjct: 606 PNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKL 665
Query: 620 EAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 679
+S+L ++ + + I L + P SE ++ V Q I + LA
Sbjct: 666 GTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLS 725
Query: 680 KCVVLCLLGISERVADIKTRAHAMKCLTTF--------SEAVGPGFIFERLYKIMKDHKN 731
K L + V + A+ + F + +G + L +
Sbjct: 726 KISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQST 785
Query: 732 PKVLSEGILWMVSAVEDFG--VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789
+ + V + F +D S + R + LG +
Sbjct: 786 ALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHH 845
Query: 790 VGPDIKGFLADVKPALLSALDAEYEK------------NPFEGTVVPKKTVRASESTSSV 837
+ ++K +L A + E+ + ++ S
Sbjct: 846 IDLS---GQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKR 902
Query: 838 SSGGSDGLPR----------EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
L + L+K E + R E + K+ +
Sbjct: 903 QYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPET 962
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947
+ P L+G L + + + + S ++ K + D LK L D
Sbjct: 963 LLPR--------LKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLED 1014
Query: 948 NKKHMRECTLTVLDA------WLAAVHLDKMVPYV 976
++R L ++ L LD ++P++
Sbjct: 1015 PDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHL 1049
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.3 bits (160), Expect = 3e-11
Identities = 107/978 (10%), Positives = 275/978 (28%), Gaps = 80/978 (8%)
Query: 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLI 917
L++ + S D R + + L++ + ++ ++ + L D N + +
Sbjct: 8 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVK 67
Query: 918 TLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL------------DAWLA 965
LG + S + E + ++ + + +K+ +R+ + L + LA
Sbjct: 68 CLGPLVSKVK---EYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA 124
Query: 966 AVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTD 1023
A K+ +T+A+ + + + D ++ L+ G +L +T
Sbjct: 125 ANVCKKITGRLTSAIAKQE-DVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS 183
Query: 1024 KSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKS 1083
VRK + ++ + G ++ +L + N + + +
Sbjct: 184 PRLAVRKRTIIALGHLVMSCGNIVFVDLIEH--------LLSELSKNDSMSTTRT-YIQC 234
Query: 1084 SSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRE 1143
+ + + A + + ++ + I V +V D ++ + E
Sbjct: 235 IAAISRQAGHRIGEYLEKIIPLVV---------KFCNVDDDELREYCIQAF--------E 277
Query: 1144 RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRK 1203
V R K P + I + + Y + + DG + +
Sbjct: 278 SFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYS 337
Query: 1204 DIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVE 1263
D ++ + R +T + EF + L E+ A +
Sbjct: 338 DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLS 397
Query: 1264 KSGHNIEKVREKMRELTKQIVNFYSA------TKTLPYILEGLRSKNNRTRIECVDLVGF 1317
+ + + + ++ K+ +TR C +++
Sbjct: 398 LLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTE 457
Query: 1318 LI---DHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
L+ + L I + ++ AL+ L ++ +
Sbjct: 458 LVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQAL 517
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
+K+ + + L + + + + +
Sbjct: 518 VPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAAD 577
Query: 1435 MRRNYGHSELHVERS---------------IMPRALASVSGPTDWNEAL----DIISFGS 1475
+ + + + L + + I
Sbjct: 578 IDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPL 637
Query: 1476 PEQSVEGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRS 1535
+ LA + ++ + D L+ ++ + ++
Sbjct: 638 KIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPL 697
Query: 1536 CKYVLNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLML 1595
+ Q + A + S I+ +L L V L A+
Sbjct: 698 ISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQ 757
Query: 1596 KILDNADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQS 1655
++ ++ L+ +L S+ + +S+ + + + L C + V+
Sbjct: 758 ALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQ 817
Query: 1656 TIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLR--MVKTVLHELVKLRGAAIKGH 1713
I DV R SI + E + L+ +++ +++ AA
Sbjct: 818 FIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYAL 877
Query: 1714 LSMVPIDMKPQ-PIILAYIDLNLETLAAARM-----LTSTGPGGQTHWGDSAANNPTSAT 1767
S+ ++ P +L I + ++S G + ++
Sbjct: 878 GSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHC 937
Query: 1768 NSADAQLKQELAAIFKKI 1785
A+ + +A K+
Sbjct: 938 ECAEEGTRNVVAECLGKL 955
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.5 bits (158), Expect = 6e-11
Identities = 117/1057 (11%), Positives = 273/1057 (25%), Gaps = 126/1057 (11%)
Query: 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRI-------RELGPLFKKTVADSNAPVQD 70
+L ++R+ ++I L + + + G L + VQ
Sbjct: 90 TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQL 149
Query: 71 KALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFL 130
+ALD + L + + + + + R ++ V VF+
Sbjct: 150 EALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFV 209
Query: 131 DVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP-----KRILKMLPELFDHQDQNVR 185
D++E + + Q ++ + ++I+ ++ + + D +R
Sbjct: 210 DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELR 269
Query: 186 ASSKGLTLELCR-------------------------WIGKDPVKTILFEKMRDTMKKEL 220
R D D +
Sbjct: 270 EYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDD 329
Query: 221 EVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVD 280
+ S + K+R K L + + ++ + + +
Sbjct: 330 QGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSP----ALISRFKEREE 385
Query: 281 ILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDF-TEVCRTLKKLITDVNI 339
+ + +K T+ + + + T + + L K + + ++
Sbjct: 386 NVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV 445
Query: 340 AVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT--VAESLTQTLQAMHKAG 397
+ L L + L+P ++ L +K + + L +
Sbjct: 446 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH 505
Query: 398 CLNLVDVVED-----VKTSVKNKVPLVRS---LTLNWVTFCIETSSKAAVLKVHKDYVPI 449
+ V V + + S L + I + + +
Sbjct: 506 SPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDL 565
Query: 450 CMECLN-----DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI---- 500
+ D EV++ A S + I ++ L + + +L I
Sbjct: 566 FTCTIKRLKAADIDQEVKERAISCMGQIICNL-GDNLGSDLPNTLQIFLERLKNEITRLT 624
Query: 501 -AGSGGDVATGTSSARVQTSGGSVPSV----EASESSFVRKSAASMLSGKRPVSAAPASK 555
+ +A ++ G + ++ S L + +
Sbjct: 625 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTA 684
Query: 556 KGGPVKPSAKKDGSGKQETSKLTEAPEDVEP-SEMSLEEIESRLGSLIPADTVGQLKSAV 614
+ + A + +++ + GS++ +
Sbjct: 685 AMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLL 744
Query: 615 WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML---PGWSEKNVQVQQQVIEVINYLA 671
L A+ Q + + L+R++ + + Q + + + L
Sbjct: 745 QGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALT 804
Query: 672 ATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK--DH 729
K V + + + R A+ L + E I++
Sbjct: 805 RACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSS 864
Query: 730 KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789
+ +V S +A G + + S L +
Sbjct: 865 PSEEVKS-------AASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSA 917
Query: 790 VGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPR-- 847
+K ++ ++ LL + E + ++ L +
Sbjct: 918 SVVGLKPYVENIWALLLKHCECAEE---------------------GTRNVVAECLGKLT 956
Query: 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS 907
P L L S R + AV + + + I P G L D
Sbjct: 957 LIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDP 1015
Query: 908 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMR-------------- 953
+ N+ L+T + A + VL + K+ +R
Sbjct: 1016 DLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDG 1075
Query: 954 --------ECTLTVLDAWLAAVHLDKMVPYVTTALTD 982
EC T+LD+ L + + + + +V L D
Sbjct: 1076 LDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD 1112
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.1 bits (144), Expect = 2e-09
Identities = 122/1002 (12%), Positives = 283/1002 (28%), Gaps = 99/1002 (9%)
Query: 413 KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472
+ R + N + ++ S + V + ++ L D EV++ A L +
Sbjct: 13 TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPL 72
Query: 473 AKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS 532
V +E ++ L + M+ S+
Sbjct: 73 VSKVKEYQVETIVDTL-------CTNML----------------------------SDKE 97
Query: 533 FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGK-QETSKLTEAPEDVEPSEMSL 591
+R ++ L K + P + G + + K +G+ E + +
Sbjct: 98 QLRDISSIGL--KTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIM 155
Query: 592 EEIESRLGSLIPAD-------TVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVR 644
++ SR G L+ + QL S R I +L V + N V+++
Sbjct: 156 ADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN-IVFVDLIEH 214
Query: 645 LVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHA 702
L+ L ++ + I+ I ++ A + + + + + + R +
Sbjct: 215 LLSELS--KNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYC 272
Query: 703 MKCLTTFSEAVGPGF------IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKL 756
++ +F I K + N E
Sbjct: 273 IQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDE-----DEDENAMDADGGDD 327
Query: 757 KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816
D + + + R A K L A+ + F V PAL+S E
Sbjct: 328 DDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENV 387
Query: 817 PFEGTV-------VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKV 869
+ + ++ G + + L K ++ K
Sbjct: 388 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKT 447
Query: 870 RLESIEAVNKILEEANKRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGP 928
R + +++ + + G + S+ NL + L L + P
Sbjct: 448 RQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP 507
Query: 929 -AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-------------HLDKMVP 974
+ ++ ++ C+GD + L V + + ++ +
Sbjct: 508 QVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFT 567
Query: 975 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEA 1034
L A + E ++ + + + L + K+ R
Sbjct: 568 CTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVK 627
Query: 1035 CIVEILRAGGQETIEKNLKDIQ---GPALALILERIKLNGASQVSMGPTSKSSSKVPKSA 1091
+ I + + + L + L +KL S + + + S S
Sbjct: 628 ALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMI 687
Query: 1092 SNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFK 1151
+ + S + ++ A + + + + R + +
Sbjct: 688 DAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGG 747
Query: 1152 FEDPRIEQIQEL-----ENDMMKYFREDLHRRLLSTD-FKKQVDGLEMLQKALPSIRKDI 1205
++ Q L N L + S + K + ++ +
Sbjct: 748 ALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRAC 807
Query: 1206 IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKS 1265
+ ++ F+ S +T +++L L +L + G+ + S ++E
Sbjct: 808 PKEGPAVVGQFIQDVKNSRSTDSIRLLALL-----SLGEVGHHIDLSGQLELKSVILEAF 862
Query: 1266 GHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAE 1325
E+V+ I + + LP++L+ + S+ R + L +
Sbjct: 863 SSPSEEVKSAASYALGSISV-GNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVG 921
Query: 1326 ISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKILGEDI 1366
+ +++ ++ + R L I E +
Sbjct: 922 LKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETL 963
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.5 bits (119), Expect = 2e-06
Identities = 59/519 (11%), Positives = 146/519 (28%), Gaps = 63/519 (12%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVA---------DSN 65
P + +K+ +EA + L I + P K D +
Sbjct: 520 PVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADID 579
Query: 66 APVQDKALDALIAYLKAADADAGRYAKEVC--------DAIAAKCLTGRPKTVEKAQAVF 117
V+++A+ + + + G + I + +
Sbjct: 580 QEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKI 639
Query: 118 MLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF 177
L L L + + + + A+D++ + S+ + + ++ P L
Sbjct: 640 DLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPP-LI 698
Query: 178 DHQDQNVRASSKGLTLELCRWIGK----------DPVKTILFEKMRDTMKKELEVELVNV 227
D +V + L + + + ++ + ++
Sbjct: 699 SESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQA 758
Query: 228 SGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEK 287
+ + L + S+ ++S + + P + + +
Sbjct: 759 LVVTGTNNLGYMDLLRMLTGPVYSQSTAL-THKQSYYSIAKCVAALTRACPKEGPAVVGQ 817
Query: 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQ 347
+ S R A+ L ++ I E+ + + + + V A
Sbjct: 818 FIQDVKNSRSTDSIRLLALLSLGEVG--HHIDLSGQLELKSVILEAFSSPSEEVKSAASY 875
Query: 348 AIGNLARGLRTHF----------SGSSRFLL-----PVLLEKLKEKKPTVAESLTQTLQA 392
A+G+++ G + ++LL ++ E++ L
Sbjct: 876 ALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLK 935
Query: 393 MHK----------AGCL------NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436
+ A CL + ++ +K + + RS + V F I +
Sbjct: 936 HCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQ 995
Query: 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
+ K+ + ++ L D VR A + A +
Sbjct: 996 PIDPLL-KNCIGDFLKTLEDPDLNVRRVALVTFNSAAHN 1033
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 3e-07
Identities = 73/598 (12%), Positives = 165/598 (27%), Gaps = 40/598 (6%)
Query: 768 LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKT 827
L++ R +IK L + +G + +++ P L + E E
Sbjct: 19 LRNEDVQLRLNSIKKLSTIALALGVERT--RSELLPFLTDTIYDEDE------------- 63
Query: 828 VRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
V + + + G P + P L + VR +++E++ I E +
Sbjct: 64 VLLALAEQLGTFTTLVGGP--EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS-- 119
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947
P+ F L RL + + G + + D
Sbjct: 120 --PSDLEAHFVPLVKRLAGGDW--FTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSD 175
Query: 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007
+ +R + L + + LD + + ++ + L +
Sbjct: 176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP 235
Query: 1008 PD--AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILE 1065
+ A ++ A DKS VR E+ +A G E + +L +
Sbjct: 236 QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEA 295
Query: 1066 RIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFA 1125
++ + +V + S+ + + +S K A IM +
Sbjct: 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL 355
Query: 1126 VQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQEL--ENDMMKYFREDLHRRLLSTD 1183
+ + ++ + ++ + E+ + + +
Sbjct: 356 GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK 415
Query: 1184 FKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1243
++ ++ +E + + + + L L +L +
Sbjct: 416 WRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMA--WLVDHVYAIREAATSNLKKLVEKFG 473
Query: 1244 DEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYS----ATKTLPYILEG 1299
E A +P ++ SG R + LP +L
Sbjct: 474 KEWAH------ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRM 527
Query: 1300 LRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLAT 1357
R + + Q + I+ LT ++D +++ A L
Sbjct: 528 AGDPVANVRFNVAKSLQKIGPILDNSTL-QSEVKPILEKLTQDQDVDVKYFAQEALTV 584
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (119), Expect = 2e-06
Identities = 56/467 (11%), Positives = 138/467 (29%), Gaps = 15/467 (3%)
Query: 14 LPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKAL 73
+P RL +W + L ++C EL F+ +D V+ A
Sbjct: 128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV--KAELRQYFRNLCSDDTPMVRRAAA 185
Query: 74 DAL--IAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLD 131
L A + D + + + + R VE + L + + + +
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRA---SS 188
+ +A ++K + D + G +I + + D + + A
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 189 KGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQE 248
K L ++ + + + +++ + + ++ I + +
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 249 LISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAE 308
+ E ++ +D V + L+ E + KW R +
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 309 LTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368
+ LA + D ++ + D A+ A + L ++ ++
Sbjct: 426 MPLLAGQLGVEFFDE-KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA--HATII 482
Query: 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV--DVVEDVKTSVKNKVPLVRSLTLNW 426
P +L + + + + + ++ ++ V + V VR
Sbjct: 483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKS 542
Query: 427 VTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473
+ + + + PI + D +V+ A L ++
Sbjct: 543 LQKIGPILDNSTL---QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 9e-06
Identities = 36/195 (18%), Positives = 61/195 (31%), Gaps = 11/195 (5%)
Query: 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN 908
+S P +V+ E W+VRL IE + + + L D
Sbjct: 398 QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWL---VDHV 454
Query: 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968
+ A L + G E + ++ +L GD R TL ++
Sbjct: 455 YAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 512
Query: 969 LD----KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDK 1024
D M+P V D A R ++ L K L + + D+
Sbjct: 513 QDITTKHMLPTVLRMAGDPV--ANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQ 570
Query: 1025 SSDVRKAAEACIVEI 1039
DV+ A+ + +
Sbjct: 571 DVDVKYFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 0.001
Identities = 81/612 (13%), Positives = 171/612 (27%), Gaps = 44/612 (7%)
Query: 280 DILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNI 339
D L P+ + ++ R +++ +L+ +A + +E+ L I D
Sbjct: 7 DSLYPIAV--LIDELRNEDVQLRLNSIKKLSTIALALGVER-TRSELLPFLTDTIYD-ED 62
Query: 340 AVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 399
V + + +G + LLP L ++ V + ++L+A+ +
Sbjct: 63 EVLLALAEQLGTFTTLV--GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI--SHEH 118
Query: 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459
+ D+ VK + V + +D TP
Sbjct: 119 SPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTP 178
Query: 460 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTS 519
VR A A +G ++ + S + + V A V +
Sbjct: 179 MVR-------RAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231
Query: 520 GGSVPSVEASESSFVRKSAASMLSGKRPVSA---APASKKGGPVKPSAKKDGSGKQETSK 576
+ + AA S + +K + + Q K
Sbjct: 232 QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMK 291
Query: 577 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVW-----KERLEAISSLRQQVEA 631
EA S E E+ + Q+ + + + +
Sbjct: 292 DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGL 351
Query: 632 VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISE 691
L + I L L ++ +V+ +I ++ + +L +
Sbjct: 352 SPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELA 411
Query: 692 RVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLS--EGILWMVSAVEDF 749
A + R ++ + + +G F E+L + V + E + + +
Sbjct: 412 EDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK 471
Query: 750 GVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSAL 809
+I R T+ + L + G DI + P +L
Sbjct: 472 FGKEWAHATIIPKVLA-MSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMA 528
Query: 810 -DAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWK 868
D V ++ + + L + + P L K + D
Sbjct: 529 GDPVAN--------VRFNVAKSLQKIGPI-------LDNSTLQSEVKPILEKLTQDQDVD 573
Query: 869 VRLESIEAVNKI 880
V+ + EA+ +
Sbjct: 574 VKYFAQEALTVL 585
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 5e-05
Identities = 51/336 (15%), Positives = 116/336 (34%), Gaps = 29/336 (8%)
Query: 614 VWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ----QQVIEVINY 669
+ + LEAI + Q ++ Q D+S EIL ++ + E + V+ ++ + +
Sbjct: 145 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGM-RKEEPSNNVKLAATNALLNSLEF 203
Query: 670 LAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDH 729
A K ++ ++ ++ + + D + R A++ L Y+ M+ +
Sbjct: 204 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI---------MSLYYQYMETY 254
Query: 730 KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789
P I + V+ ++ + C + + A+ + KF
Sbjct: 255 MGP--ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKF 312
Query: 790 VGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPRED 849
+L + L+ D + + + + + +D
Sbjct: 313 YAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT-----------CCEDD 361
Query: 850 ISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNK 909
I P + + +++PDW+ R ++ A ILE + L + D +
Sbjct: 362 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSV 421
Query: 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945
+ T+G + + A L+ +L+CL
Sbjct: 422 VVRDTAAWTVGRICELLPEAAINDV--YLAPLLQCL 455
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.9 bits (99), Expect = 4e-04
Identities = 70/725 (9%), Positives = 202/725 (27%), Gaps = 57/725 (7%)
Query: 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATR 776
I + P++ + +++A+ D + H +L+ D +
Sbjct: 95 QIKTNALTALVS-IEPRIAN-AAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVK 152
Query: 777 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 836
A++ LG + + P + ++ +L A+ + V + A + +
Sbjct: 153 RASLLALGYMCESADPQSQALVSSSNN-ILIAIVQGAQSTETSKAVR----LAALNALAD 207
Query: 837 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGEL 896
+ + RE + ++ ++ D +V+ + + KI+ + ++P L
Sbjct: 208 SLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQAL 267
Query: 897 FGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECT 956
+ + N + T+ + + ++ L+ +++
Sbjct: 268 YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQ-FPQSPLQSYNFALSSIKDVV 326
Query: 957 LTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016
+L+ + + + A L + L L
Sbjct: 327 PNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLE-------------F 373
Query: 1017 ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVS 1076
+T + R+AA I+ + + L L +N S
Sbjct: 374 VEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNL------MNDQSLQV 427
Query: 1077 MGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKD 1136
T+ ++ S + + G + ++ + + +
Sbjct: 428 KETTAWCIGRIADSVAESIDPQ-QHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAE 486
Query: 1137 SNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGL-EMLQ 1195
+ + L + E R + V+ + +
Sbjct: 487 ATPSPIYNFY----------PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA 536
Query: 1196 KALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTL-RDEGYSLTESEA 1254
+ SI +++ L + Q + L ++ + + + R S+
Sbjct: 537 ETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD 596
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSAT------KTLPYILEGLRSKNNRTR 1308
+ + + + + + PY+L+ L ++
Sbjct: 597 MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS 656
Query: 1309 IECVDLVGFLIDHHGAEISGQLKSL--QIVASLTAER-DGEIRKAALNTLATGYKILGED 1365
I V + + + + ++ + ++ E++ A L+ +G D
Sbjct: 657 ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD 716
Query: 1366 IWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDV 1425
Y+ + + + + + E + + + +V + I D
Sbjct: 717 FIPYLNDIMALCVAAQNTKPENGTLEAL--------DYQIKVLEAVLDAYVGIVAGLHDK 768
Query: 1426 SQSVS 1430
+++
Sbjct: 769 PEALF 773
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 0.001
Identities = 70/591 (11%), Positives = 171/591 (28%), Gaps = 61/591 (10%)
Query: 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY----DSNKNL 911
P L L+S D+ + A+ KI E++ + + + + S+ +
Sbjct: 129 PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKI 188
Query: 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA------ 965
+ + + A+ ++ GD + +R+ L L
Sbjct: 189 RSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 248
Query: 966 AVHLDKMVPYVTTALTDAKLG-AEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASI-AMTD 1023
H+ +V Y+ D A + + L++Q L P + M
Sbjct: 249 LPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKY 308
Query: 1024 KSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKS 1083
D+ + ++ I + A + I+ +
Sbjct: 309 SDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTI 368
Query: 1084 SSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRE 1143
S + S ++P + ++ ++ V+ +L + + +
Sbjct: 369 SDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ 428
Query: 1144 RM----------VVRRFKFEDPRIEQI-------------QELENDMMKYFREDLHRRLL 1180
M +++ + + I + + +K +L +R+L
Sbjct: 429 GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL 488
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
++ + Q +++ L +L V F K LL + + + L D
Sbjct: 489 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 548
Query: 1241 TLRD-------------------EGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTK 1281
++ + + L CL + + +
Sbjct: 549 SVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ 608
Query: 1282 QIVNFYSAT--KTLPYILEGLRSKNNRT--RIECVDLVGFLIDHHGAEISGQLKSLQIVA 1337
+ VN T + + + + + I +DL+ L + G I + I+
Sbjct: 609 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILT 668
Query: 1338 SL---TAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRF 1385
+ ++ E+R+++ L K + + + + L+ F
Sbjct: 669 LMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEF 719
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1871 | |||
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.92 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.87 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.81 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.69 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.56 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.48 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.33 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.17 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.02 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.99 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.94 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.73 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.54 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.47 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 97.84 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 97.52 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.43 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.38 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 97.33 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 97.25 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 96.94 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 96.54 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 96.44 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 96.35 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 96.26 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 96.17 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 95.9 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 95.51 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 95.48 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 93.11 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 92.98 | |
| d1dvpa1 | 145 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 92.61 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 90.76 | |
| d1juqa_ | 151 | ADP-ribosylation factor binding protein Gga3 {Huma | 90.59 | |
| d1elka_ | 153 | Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} | 90.05 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 86.04 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 85.19 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 83.78 | |
| d1juqa_ | 151 | ADP-ribosylation factor binding protein Gga3 {Huma | 82.66 | |
| d1dvpa1 | 145 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 82.61 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=9.5e-20 Score=248.11 Aligned_cols=948 Identities=15% Similarity=0.135 Sum_probs=555.3
Q ss_pred cccccCcCchhHHHHHHHHHHHHhhhcC-CCCchhhhhhhhchhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhhhHH
Q 000200 16 WEDRLLHKNWKVRNEANIDLAALCDSIT-DPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEV 94 (1871)
Q Consensus 16 l~erl~hK~WKaRl~ayeel~~~f~~~~-d~~d~~~~~~~~l~kk~v~DsN~~aqek~leal~~~l~~a~~~~~~~~~~~ 94 (1871)
|-|++.|.++--|..|..+|.+.++... .-++..+.+....+-+.+.|+|..+|..|+.++..++..... .....+
T Consensus 8 ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~---~~~~~l 84 (1207)
T d1u6gc_ 8 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVETI 84 (1207)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHHHH
T ss_pred HHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcH---hhHHHH
Confidence 4478999999999999999998875321 111223444444445689999999999999999888766532 234566
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHHHHHh-hcc-------hhhHHHH----HHHH-hhccCchhHHHHHHHHHHHHHhhCC
Q 000200 95 CDAIAAKCLTGRPKTVEKAQAVFMLWVE-LEA-------VDVFLDV----MEKA-IKNKVAKAVVPAIDVMFQALSEFGA 161 (1871)
Q Consensus 95 ~~~lveK~L~~r~~tk~~a~e~~l~~vE-~e~-------~~~v~e~----ll~~-~~~K~PKvvaaai~~l~~~l~~FG~ 161 (1871)
+..|+...++.....++.+.-++-..++ +.. ...+... +... .+++++.+..+|+..+.+++..||.
T Consensus 85 ~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~ 164 (1207)
T d1u6gc_ 85 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 164 (1207)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhH
Confidence 7777777666666666655544433332 211 1122222 2332 3457789999999999999999998
Q ss_pred CccC-hhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhHHH---hhhchH--------HHHHHHHHHHHhcCC
Q 000200 162 KIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTIL---FEKMRD--------TMKKELEVELVNVSG 229 (1871)
Q Consensus 162 ~vv~-~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~lk~~L---~~~Lkp--------~q~keLe~efek~~~ 229 (1871)
...+ ...+++.+-..+.|.+..||..|...+..+..++|...+...+ ++.+.+ .-.+-|...+.....
T Consensus 165 ~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~ 244 (1207)
T d1u6gc_ 165 LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 244 (1207)
T ss_dssp SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG
T ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcch
Confidence 6554 5668999999999999999999999999999999864332221 111110 001111111111100
Q ss_pred CCCC---c-------------chhhhHHhHhhhhhhcccCCC-------------------CCCCCCCCCCCCCCCCccc
Q 000200 230 TARP---T-------------RKIRAEQDKELGQELISEDVG-------------------PGPSEESTADVPPEIDEYE 274 (1871)
Q Consensus 230 ~~~P---~-------------R~~Rs~q~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~iDp~d 274 (1871)
...| . -.+|...-.. .+......+ .++.. .......+.+-.+
T Consensus 245 ~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~--l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~-~~~~~~~~~~~~~ 321 (1207)
T d1u6gc_ 245 RIGEYLEKIIPLVVKFCNVDDDELREYCIQA--FESFVRRCPKEVYPHVSTIINICLKYLTYDPNY-NYDDEDEDENAMD 321 (1207)
T ss_dssp GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHH--HHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----------------
T ss_pred hhHHHHHHHHHHHHHHhcCccHHHHHHHHHH--HHHHHHhChhhhhhhHHHHHHHHHHHHhcCcch-hhhhHHHHHhhhh
Confidence 0000 0 0001000000 000000000 00000 0000000000011
Q ss_pred cCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhh-cCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 000200 275 LVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLA 353 (1871)
Q Consensus 275 l~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA 353 (1871)
.....+..... +.++....+..|+.|+.+++-|..++. .|.....-|.+++..|-.++.|.+-.|...++.+++.+.
T Consensus 322 ~~~~~~~~~~~--~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~ 399 (1207)
T d1u6gc_ 322 ADGGDDDDQGS--DDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL 399 (1207)
T ss_dssp ----------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred hhccchhhhhH--HHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 11111111112 356677888999999999999988764 454444557788999999999999999999999999998
Q ss_pred HHhccc-------------------cccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC----hhhhHHHHHH
Q 000200 354 RGLRTH-------------------FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----LVDVVEDVKT 410 (1871)
Q Consensus 354 ~gLr~~-------------------F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~----l~~~~e~i~~ 410 (1871)
+..+.. +..+...+++.+...++++...++.++..++..++...... +..+++.+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~ 479 (1207)
T d1u6gc_ 400 KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIF 479 (1207)
T ss_dssp HHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHH
T ss_pred HhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHH
Confidence 876532 34556678889999999999999999999999988762222 3455667777
Q ss_pred HhhcCCc--hhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhH------HH
Q 000200 411 SVKNKVP--LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP------LE 482 (1871)
Q Consensus 411 al~~KnP--~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~------l~ 482 (1871)
.+.++++ .+|.+++.++...+..+....+.+.+..+.+.+..+++|....+|..|..+++.+.+.++... +.
T Consensus 480 ~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~ 559 (1207)
T d1u6gc_ 480 SLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT 559 (1207)
T ss_dssp HTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhH
Confidence 8877664 688999999999999887777777778899999999999999999999999999999876311 11
Q ss_pred HHhhcC-------------CHHHHHHHHHHH----hcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCC
Q 000200 483 RSIEKL-------------DDVRRNKLSEMI----AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGK 545 (1871)
Q Consensus 483 ~~l~~L-------------d~~kk~KI~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (1871)
+++.++ |..-+.....++ ...+.. .. +. -...... .....
T Consensus 560 ~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~---~~--------------~~--~~~~l~~----l~~~l 616 (1207)
T d1u6gc_ 560 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN---LG--------------SD--LPNTLQI----FLERL 616 (1207)
T ss_dssp HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG---CC--------------TH--HHHHHHH----HHHHT
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhh---hH--------------HH--HHHHHHH----HHHHh
Confidence 222111 111111111111 111000 00 00 0000000 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHH
Q 000200 546 RPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSL 625 (1871)
Q Consensus 546 ~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l 625 (1871)
..... . ..+ .++-.. ..... ....+. .-+. .+ -+.+...+.+.+|..|..+++.+
T Consensus 617 ~~~~~----------r-~~a----~~~l~~-i~~~~---~~~~~~-~~l~----~~-~~~l~~~l~~~~~~~r~~al~~L 671 (1207)
T d1u6gc_ 617 KNEIT----------R-LTT----VKALTL-IAGSP---LKIDLR-PVLG----EG-VPILASFLRKNQRALKLGTLSAL 671 (1207)
T ss_dssp TSSSH----------H-HHH----HHHHHH-HTTCS---SCCCCH-HHHH----HH-HHHHHHHTTSCCHHHHHHHHHHH
T ss_pred cchhh----------H-HHH----HHHHHH-HHHhc---cchhHH-HHHH----HH-HHHHHHhcccchHHHHHHHHHHH
Confidence 00000 0 000 000000 00000 000111 1111 11 13467888999999999999999
Q ss_pred HHHHHhhhc-cch-hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHH
Q 000200 626 RQQVEAVQN-LDQ-SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAM 703 (1871)
Q Consensus 626 ~~~v~~~~~-~~~-~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~ 703 (1871)
...+..... ... ..+.++..+. +...|++.++.+..++++..++...+.........+++.++.-+.+.-+...+.
T Consensus 672 ~~l~~~~~~~~~~~~~~~~l~~l~--~ll~~~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s~l~~~~~~ 749 (1207)
T d1u6gc_ 672 DILIKNYSDSLTAAMIDAVLDELP--PLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGAL 749 (1207)
T ss_dssp HHHHHHCCTTCCHHHHHHHHTTCG--GGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHH
T ss_pred HHHHHhccccchhHHHhhHHHhhc--cccccccHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHhcCchhhhhhH
Confidence 888877432 221 1233443332 557899999999999999988765433222222333333333333322222222
Q ss_pred HHHHHHHH------------------------------------------------hhchH--hHHHHHHHhh-hhcCCh
Q 000200 704 KCLTTFSE------------------------------------------------AVGPG--FIFERLYKIM-KDHKNP 732 (1871)
Q Consensus 704 e~L~~~aE------------------------------------------------~~~~~--~V~~~l~~~~-~~~KnP 732 (1871)
..+..+.. ..+.. .++.+++... ....++
T Consensus 750 ~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~l~~~l~~~~~~~~~~ 829 (1207)
T d1u6gc_ 750 SAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTD 829 (1207)
T ss_dssp HHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCH
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccchH
Confidence 22222111 11000 0111111111 123456
Q ss_pred hhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHH
Q 000200 733 KVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (1871)
Q Consensus 733 Kv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~E 812 (1871)
.++..++..++.+...+|... ...+.+.+... |++.++.||.+|...+|.+...-.+.. -|.+++.++.+
T Consensus 830 ~~~~~al~~Lge~~~~~~~~~--~~~l~~~l~~~-l~~~~~~vr~aAa~aLg~l~~~~~~~~-------lp~il~~l~~~ 899 (1207)
T d1u6gc_ 830 SIRLLALLSLGEVGHHIDLSG--QLELKSVILEA-FSSPSEEVKSAASYALGSISVGNLPEY-------LPFVLQEITSQ 899 (1207)
T ss_dssp HHHHHHHHHHHHHHHHSCCCS--CTHHHHHHHHG-GGCSCHHHHHHHHHHHHHHHHHTHHHH-------HHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhccccc--hHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHhhHHHH-------hHHHHHHHhcC
Confidence 778888888888887777643 34566667776 999999999999999998765433222 23334433211
Q ss_pred HhcCCCCCCCCCcccccccc--ccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCC
Q 000200 813 YEKNPFEGTVVPKKTVRASE--STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP 890 (1871)
Q Consensus 813 F~K~~~~~~p~p~R~~r~~~--~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p 890 (1871)
- ..|...-.. +.-. ..+..+.. +...+|-+.++..+++.+|.+|..+.+-+.+++.-.
T Consensus 900 ~----------~~~~~ll~al~ei~~-~~~~~~~~---~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~------ 959 (1207)
T d1u6gc_ 900 P----------KRQYLLLHSLKEIIS-SASVVGLK---PYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID------ 959 (1207)
T ss_dssp G----------GGHHHHHHHHHHHHH-SSCSTTTH---HHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSS------
T ss_pred c----------hHHHHHHHHHHHHHH-hcchhhhH---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC------
Confidence 0 001000000 0000 00000110 122334456677789999999999999999887521
Q ss_pred CCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc--
Q 000200 891 AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-- 968 (1871)
Q Consensus 891 ~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g-- 968 (1871)
..++++.|..++.|.|.++...++.++..+...+|..+..|.+.+++.++..|+|....||.+|+.|++..+..-+
T Consensus 960 --~~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~l 1037 (1207)
T d1u6gc_ 960 --PETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSL 1037 (1207)
T ss_dssp --GGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGG
T ss_pred --HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 2678999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred chhhhHHHHHHHhc-ccC-------------------CcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHH
Q 000200 969 LDKMVPYVTTALTD-AKL-------------------GAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDV 1028 (1871)
Q Consensus 969 l~~~~~~i~~~L~~-~~~-------------------~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dV 1028 (1871)
+.+.++.+...|-+ -.+ +-++|+..++-|..-+..+...-+...++..+..+|.|- -|+
T Consensus 1038 i~~~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~~l~~~~~~~~~~~~~~~~~~gl~d~-~di 1116 (1207)
T d1u6gc_ 1038 IRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDH-YDI 1116 (1207)
T ss_dssp TGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSSC-HHH
T ss_pred HHHHHHHHHHHHHHHhccchhheeeeecCCceeecCCcHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHhcccch-HHH
Confidence 23444444444421 111 223788888887777766555555666776677888884 588
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHhhcc
Q 000200 1029 RKAAEACIVEILRAGGQETIEKNLKDI 1055 (1871)
Q Consensus 1029 RkaA~~~L~~~m~~~G~~~~~~~~~~L 1055 (1871)
|-.+...|..++.... +.+...++.|
T Consensus 1117 ~~~~~~~l~~l~~~~~-~~~~~~l~~~ 1142 (1207)
T d1u6gc_ 1117 KMLTFLMLVRLSTLCP-SAVLQRLDRL 1142 (1207)
T ss_dssp HHHHHHHHHHHHHSCC-HHHHTTTTTT
T ss_pred HHHHHHHHHHHHHhCc-HHHHHHHHHH
Confidence 8888888877766544 3444444443
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2.3e-17 Score=224.32 Aligned_cols=954 Identities=14% Similarity=0.123 Sum_probs=537.6
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHHHHHhhc-------chhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccChh
Q 000200 95 CDAIAAKCLTGRPKTVEKAQAVFMLWVELE-------AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPK 167 (1871)
Q Consensus 95 ~~~lveK~L~~r~~tk~~a~e~~l~~vE~e-------~~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~~vv~~K 167 (1871)
+..|.+|.-+..+..+--|..-++....-+ ....+++.++..++.+||.|+..|+.++..++...+.. .+.
T Consensus 5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~--~~~ 82 (1207)
T d1u6gc_ 5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QVE 82 (1207)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HHH
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh--hHH
Confidence 566778854456667766665555554332 13478899999999999999999999998887654432 346
Q ss_pred HHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHh-cCCCCCCcchhhhHHhHhhh
Q 000200 168 RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVN-VSGTARPTRKIRAEQDKELG 246 (1871)
Q Consensus 168 ~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~lk~~L~~~Lkp~q~keLe~efek-~~~~~~P~R~~Rs~q~~~~~ 246 (1871)
.+++.|-..+.+.+..+|+.+...+..+...++..... ..+.....+.+-..+.. ......+ .+|...-.--.
T Consensus 83 ~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~--~v~~~al~~l~ 156 (1207)
T d1u6gc_ 83 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG----SALAANVCKKITGRLTSAIAKQEDV--SVQLEALDIMA 156 (1207)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC---------CCTHHHHHHHHHHHHHHHHSCCSCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchhhhHHHHHHHHHHHHhccccccc----chhHHHHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHH
Confidence 67777777777788999999888888887777642110 11111111111111111 1111111 12221110000
Q ss_pred hhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHH
Q 000200 247 QELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEV 326 (1871)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL 326 (1871)
+ ....-|. .+.+| . .+|+ +.+...+.+.+|..|+.|+..|..++.. +....|.++
T Consensus 157 -~-l~~~~g~------------~l~~~--~--~~il-----~~l~~~l~~~~~~vR~~A~~~l~~l~~~--~~~~~~~~~ 211 (1207)
T d1u6gc_ 157 -D-MLSRQGG------------LLVNF--H--PSIL-----TCLLPQLTSPRLAVRKRTIIALGHLVMS--CGNIVFVDL 211 (1207)
T ss_dssp -H-HHHHTCS------------SCTTT--H--HHHH-----HHHGGGGGCSSHHHHHHHHHHHHHHTTT--C----CTTH
T ss_pred -H-HHHHhhH------------hhHHH--H--HHHH-----HHHHHHhCCCCHHHHHHHHHHHHHHHHH--CCHHHHHHH
Confidence 0 0000000 11121 0 1222 3577788999999999999998887642 112335566
Q ss_pred HHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC-hhhh
Q 000200 327 CRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-LVDV 404 (1871)
Q Consensus 327 ~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~-l~~~ 404 (1871)
+..+-+.+. +.+..+...+++|++.|++..+..|.+|...++|.+++.+.+....+|+++..++..+... |-. +...
T Consensus 212 ~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~-~~~~~~~~ 290 (1207)
T d1u6gc_ 212 IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR-CPKEVYPH 290 (1207)
T ss_dssp HHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC-TTCCCHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh-Chhhhhhh
Confidence 776666665 7777788889999999999999999999999999999999999999999999999999876 422 2222
Q ss_pred HHHHHHH-----------------------------------------hhcCCchhHHHHHHHHHHHHhhCChhHHHHhh
Q 000200 405 VEDVKTS-----------------------------------------VKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1871)
Q Consensus 405 ~e~i~~a-----------------------------------------l~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~ 443 (1871)
++++... ....+..+|..+...|...+...+. .+..+.
T Consensus 291 ~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~-~l~~~~ 369 (1207)
T d1u6gc_ 291 VSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE-MLPEFY 369 (1207)
T ss_dssp HHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCT-THHHHH
T ss_pred HHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHH-HHHHHH
Confidence 2222211 2345678888888888877776543 334566
Q ss_pred hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCC
Q 000200 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (1871)
Q Consensus 444 k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1871)
..++|.++..+.|+++.||.++..+++.+.+..+...... . .
T Consensus 370 ~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~---------------------------~-----~------ 411 (1207)
T d1u6gc_ 370 KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWL---------------------------C-----D------ 411 (1207)
T ss_dssp TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC--------------------------------------------
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhh---------------------------h-----c------
Confidence 7899999999999999999999999988876543210000 0 0
Q ss_pred CCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCH-HHHHHHHhccC
Q 000200 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL-EEIESRLGSLI 602 (1871)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~-ee~e~~~~~l~ 602 (1871)
+.. . ....++ ..+...+ ..+
T Consensus 412 -----------------------~~~---~--------------------------------~~~~~~~~~l~~~~-~~i 432 (1207)
T d1u6gc_ 412 -----------------------PDA---M--------------------------------EQGETPLTMLQSQV-PNI 432 (1207)
T ss_dssp ----------------------------------------------------------------CCCHHHHHHHHT-THH
T ss_pred -----------------------hHH---H--------------------------------HhhcchHHHHHHHh-HHH
Confidence 000 0 000011 1122111 112
Q ss_pred cHhHHHhhhhccHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcC-CCCcc
Q 000200 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT-KFPKK 680 (1871)
Q Consensus 603 ~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~-~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~-~fs~~ 680 (1871)
-..+...+.+++++.|..++.-+.+.+.... ........++..+...-+=+.++.++....+..+..++.... .....
T Consensus 433 ~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~ 512 (1207)
T d1u6gc_ 433 VKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHP 512 (1207)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHH
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHH
Confidence 2456788899999999998888877666532 222333333333322111122344555666777776665421 12223
Q ss_pred chhhhccchhhccccc--hhhhHHHHHHHHHHHhhch-------------HhHHHHHHHhhh-hcCChhhHHHHHHHHHH
Q 000200 681 CVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGP-------------GFIFERLYKIMK-DHKNPKVLSEGILWMVS 744 (1871)
Q Consensus 681 ~~~~~l~~lveKlgD~--K~r~~a~e~L~~~aE~~~~-------------~~V~~~l~~~~~-~~KnPKv~~e~l~wl~~ 744 (1871)
....+++.++..+.|. +.+..+..++..++....+ ..++..++..+. ....+.++..++..+..
T Consensus 513 ~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~ 592 (1207)
T d1u6gc_ 513 HVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQ 592 (1207)
T ss_dssp HHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 3344555555555553 5566666666666665442 112223333322 24556677777777777
Q ss_pred HHHHhccCcc-chHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCC
Q 000200 745 AVEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (1871)
Q Consensus 745 ai~eFG~~~~-~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~ 823 (1871)
.+..+|-... .+..++..+... +. |...|..++..++.+......
T Consensus 593 l~~~~~~~~~~~~~~~l~~l~~~-l~--~~~~r~~a~~~l~~i~~~~~~------------------------------- 638 (1207)
T d1u6gc_ 593 IICNLGDNLGSDLPNTLQIFLER-LK--NEITRLTTVKALTLIAGSPLK------------------------------- 638 (1207)
T ss_dssp HHHHTGGGCCTHHHHHHHHHHHH-TT--SSSHHHHHHHHHHHHTTCSSC-------------------------------
T ss_pred HHHHhhhhhHHHHHHHHHHHHHH-hc--chhhHHHHHHHHHHHHHhccc-------------------------------
Confidence 7766664322 234444444433 43 233555555544333210000
Q ss_pred CccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhh
Q 000200 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR 903 (1871)
Q Consensus 824 p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~r 903 (1871)
.+. ..+...+-+.+...+.+.+|..|..+++.+..++......+.+..+..++..|...
T Consensus 639 ------------------~~~---~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~l 697 (1207)
T d1u6gc_ 639 ------------------IDL---RPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPL 697 (1207)
T ss_dssp ------------------CCC---HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGG
T ss_pred ------------------hhH---HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHhhHHHhhccc
Confidence 000 01122233456677889999999999999999998655555555455677778888
Q ss_pred ccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc---cc-hhhhHHHHHH
Q 000200 904 LYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV---HL-DKMVPYVTTA 979 (1871)
Q Consensus 904 l~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~---gl-~~~~~~i~~~ 979 (1871)
+.|++..+...++.+++.++...+.....+...+++.++..+.+.- +...+..++...+..+ +. ....+.+...
T Consensus 698 l~~~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s~l--~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 775 (1207)
T d1u6gc_ 698 ISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPL--LQGGALSAMLDFFQALVVTGTNNLGYMDLLRM 775 (1207)
T ss_dssp SCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTT--CCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHhcCch--hhhhhHHHHHHHHHHHHhccccccchHHHHHH
Confidence 8999999999999999999999888888888899999988876542 2223333333332221 11 1112233333
Q ss_pred Hhcc---cCCcchHHHHHHHHHHHhccCCC--CcchhhhhhHHhhhc-C-CCCHHHHHHHHHHHHHHHHhcCHHHHHHHh
Q 000200 980 LTDA---KLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLLKPASIAM-T-DKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (1871)
Q Consensus 980 L~~~---~~~p~~r~e~l~wL~~~l~~~~~--~~~~~~~~~p~~~~L-~-Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~ 1052 (1871)
|... ..++..+.+.+..+.+++..... .......+.+++..+ . +.+..+|..|-.+|+.+..+.|....
T Consensus 776 l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~al~~Lge~~~~~~~~~~---- 851 (1207)
T d1u6gc_ 776 LTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQ---- 851 (1207)
T ss_dssp HSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSC----
T ss_pred HHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccch----
Confidence 3211 01122333344444333322110 112222333322222 1 12233444443333333222211000
Q ss_pred hccCchhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhc
Q 000200 1053 KDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALL 1132 (1871)
Q Consensus 1053 ~~Lk~~~~~~i~~~l~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1132 (1871)
T Consensus 852 -------------------------------------------------------------------------------- 851 (1207)
T d1u6gc_ 852 -------------------------------------------------------------------------------- 851 (1207)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCChHHHHhhhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHhHHHH
Q 000200 1133 NVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDIL 1212 (1871)
Q Consensus 1133 ~~~~~~K~~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~~lDll 1212 (1871)
.++. .-+...+.+.+..-+.+|...|-.....+.... +..+
T Consensus 852 -------------------------~~l~-----------~~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~~~---lp~i 892 (1207)
T d1u6gc_ 852 -------------------------LELK-----------SVILEAFSSPSEEVKSAASYALGSISVGNLPEY---LPFV 892 (1207)
T ss_dssp -------------------------THHH-----------HHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHH---HHHH
T ss_pred -------------------------HHHH-----------HHHHHHhCCCCHHHHHHHHHHHHHHHHhhHHHH---hHHH
Confidence 0000 001111111222222222222211110011110 1111
Q ss_pred HHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhhccCccch
Q 000200 1213 LRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKT 1292 (1871)
Q Consensus 1213 lkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~skv 1292 (1871)
++- .++.+..-.- ++..+.+.+...+.......+..+++.|+..+.+..+.+|..+-+++-.++.++| ..+
T Consensus 893 l~~-----l~~~~~~~~~---ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~-~~~ 963 (1207)
T d1u6gc_ 893 LQE-----ITSQPKRQYL---LLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP-ETL 963 (1207)
T ss_dssp HHH-----HHSCGGGHHH---HHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG-GGT
T ss_pred HHH-----HhcCchHHHH---HHHHHHHHHHhcchhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCH-HHH
Confidence 111 1111110000 1122222233333333344566778888888888999999999999999998887 568
Q ss_pred HHHHHhhhccCChhhHhHHHHHHHHHHHhhcCcccCccch-HHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHH
Q 000200 1293 LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRY 1369 (1871)
Q Consensus 1293 f~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v~~~~Ka-l~~ia~~i~drD~~VR~AALn~l~~~y~~~Gd~v~k~ 1369 (1871)
+|.|.+.+++.|+.+|..++.-+.+++...|-.+..-.+. ++.+-..++|.|..||.+|+.+|.++-..-++-|.-+
T Consensus 964 lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~ 1041 (1207)
T d1u6gc_ 964 LPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDL 1041 (1207)
T ss_dssp HHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGG
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 9999999999999999999999999988777543111222 3555677899999999999999998865555544444
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.4e-17 Score=209.89 Aligned_cols=555 Identities=18% Similarity=0.187 Sum_probs=358.7
Q ss_pred hhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCC-ChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhh
Q 000200 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (1871)
Q Consensus 288 ~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~-dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~ 366 (1871)
+-|.+.|++.....|..++..|-.+... +.+. .-.+|+..|...+.|..- |...+++.++.++.-++. ..|+..
T Consensus 13 ~~l~~~l~~~~~~~R~~a~~~l~~ia~~--lg~~~~~~~lip~l~~~~~~~~e-v~~~~~~~l~~~~~~~~~--~~~~~~ 87 (588)
T d1b3ua_ 13 AVLIDELRNEDVQLRLNSIKKLSTIALA--LGVERTRSELLPFLTDTIYDEDE-VLLALAEQLGTFTTLVGG--PEYVHC 87 (588)
T ss_dssp HHHHHHTTCSCHHHHHHHHHTHHHHHHH--SCHHHHHHTHHHHHHHTCCCCHH-HHHHHHHHHTTCSGGGTS--GGGGGG
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHH--hCcHhhHHHHHHHHHHHhcCcHH-HHHHHHHHHHHHHHHcCC--hhHHHH
Confidence 3578889999999999999998776431 1111 136789999998886553 444445555555444332 246788
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHH---HHH-HHhhcCCchhHHHHHHHHHHHHhhCChhHHHHh
Q 000200 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVE---DVK-TSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (1871)
Q Consensus 367 ~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e---~i~-~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~ 442 (1871)
++|++..-+.+.-+.||+++.++|..+... .+.+++.+ .+. ...++.....|..+...+..++........
T Consensus 88 ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~--~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~--- 162 (588)
T d1b3ua_ 88 LLPPLESLATVEETVVRDKAVESLRAISHE--HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK--- 162 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTT--SCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHH---
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHH---
Confidence 899888888999999999999999999875 45444332 233 334566678888888888888776554433
Q ss_pred hhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCC
Q 000200 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGS 522 (1871)
Q Consensus 443 ~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1871)
..+.+.+.++++|.++.||.+++.+++.+.+.+|.+...+.+- .-+.+.+... .
T Consensus 163 -~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~-------~~l~~l~~d~---------~--------- 216 (588)
T d1b3ua_ 163 -AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEII-------PMFSNLASDE---------Q--------- 216 (588)
T ss_dssp -HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHH-------HHHHHHHTCS---------C---------
T ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHH-------HHHHHHhcCC---------c---------
Confidence 5678889999999999999999999999999888654433221 0122222110 0
Q ss_pred CCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccC
Q 000200 523 VPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLI 602 (1871)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~ 602 (1871)
..++..+..... .- ....+.++... .+
T Consensus 217 ---------~~vr~~a~~~l~-----------------------------~i-----------~~~~~~~~~~~----~i 243 (588)
T d1b3ua_ 217 ---------DSVRLLAVEACV-----------------------------NI-----------AQLLPQEDLEA----LV 243 (588)
T ss_dssp ---------HHHHTTHHHHHH-----------------------------HH-----------HHHSCHHHHHH----HT
T ss_pred ---------hhhHHHHHHHHH-----------------------------Hh-----------hccCCHHHHHH----HH
Confidence 000000000000 00 00012222221 23
Q ss_pred cHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccch
Q 000200 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV 682 (1871)
Q Consensus 603 ~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~ 682 (1871)
-+-+...+.+.+|..|..+++.+.+......... ..+.++..+.. ..+|++..
T Consensus 244 ~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~--ll~d~~~~------------------------ 296 (588)
T d1b3ua_ 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI-TKTDLVPAFQN--LMKDCEAE------------------------ 296 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH-HHHTHHHHHHH--HHTCSSHH------------------------
T ss_pred HHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhh-hhhhhhHHHHH--HHhccchH------------------------
Confidence 3455566677778887777777665554432111 01111222110 13333333
Q ss_pred hhhccchhhccccchhhhHHHHHHHHHHHhhch--------HhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCcc
Q 000200 683 VLCLLGISERVADIKTRAHAMKCLTTFSEAVGP--------GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL 754 (1871)
Q Consensus 683 ~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~--------~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~ 754 (1871)
+|..+...|..+++..+. +.++..+... ....+++|+..+..++.....-+|-. .
T Consensus 297 ---------------vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~-~~d~~~~vr~~~~~~l~~~~~~~~~~-~ 359 (588)
T d1b3ua_ 297 ---------------VRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVIMGLSPILGKD-N 359 (588)
T ss_dssp ---------------HHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH-HTCSCHHHHHHHHTTGGGGHHHHCHH-H
T ss_pred ---------------HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHh-hcCCChHHHHHHHHHHhhhhhccchh-H
Confidence 344444444444443322 1233333333 46788888888877777776666643 2
Q ss_pred chHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcccccccccc
Q 000200 755 KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST 834 (1871)
Q Consensus 755 ~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~ 834 (1871)
....++..+... +.+.++.||..++..++.+...+|..-
T Consensus 360 ~~~~l~p~l~~~-l~d~~~~v~~~~~~~l~~~~~~~~~~~---------------------------------------- 398 (588)
T d1b3ua_ 360 TIEHLLPLFLAQ-LKDECPEVRLNIISNLDCVNEVIGIRQ---------------------------------------- 398 (588)
T ss_dssp HHHHTHHHHHHH-HTCSCHHHHHHHHTTCHHHHHHSCHHH----------------------------------------
T ss_pred HHHHHHHHHHHH-HHhhhhhhhhHHHHHHHHHHhhcchhh----------------------------------------
Confidence 234556666666 888888899888887777666555320
Q ss_pred CCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHH
Q 000200 835 SSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMA 914 (1871)
Q Consensus 835 ~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~ 914 (1871)
++..|-+.+..-++|.+|++|..+++.+..++..-+... ....+...+-..+.|.+..|...
T Consensus 399 ---------------~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~D~~~~VR~~ 460 (588)
T d1b3ua_ 399 ---------------LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREA 460 (588)
T ss_dssp ---------------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG---CCHHHHHHHHHGGGCSSHHHHHH
T ss_pred ---------------hhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHh---HHHHHHHHHHhhccCCchhHHHH
Confidence 011122345566788999999999999999886422111 11346666677789999999999
Q ss_pred HHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchh----hhHHHHHHHhcccCCcchH
Q 000200 915 TLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDK----MVPYVTTALTDAKLGAEGR 990 (1871)
Q Consensus 915 al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~----~~~~i~~~L~~~~~~p~~r 990 (1871)
|+.+++.++..+|+.+. ...++|.+...+.|++..+|.+++.|+..+...++.+. ++|.+...+.++ .|+.|
T Consensus 461 A~~~L~~l~~~~~~~~~--~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~--v~nVR 536 (588)
T d1b3ua_ 461 ATSNLKKLVEKFGKEWA--HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP--VANVR 536 (588)
T ss_dssp HHHHHHHHHHHHCHHHH--HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCS--CHHHH
T ss_pred HHHHHHHHHHHhCcHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCC--CHHHH
Confidence 99999999999998653 45688999999999999999999999999999887644 455555555555 48899
Q ss_pred HHHHHHHHHHhccCCCCcchhhhhhHHhhh-cCCCCHHHHHHHHHHHHHH
Q 000200 991 KDLFDWLSKQLTGLSGFPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEI 1039 (1871)
Q Consensus 991 ~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~-L~Dr~~dVRkaA~~~L~~~ 1039 (1871)
..++..|.+-...... ......+.|++.. ++|.+.|||..|+++|..+
T Consensus 537 ~~a~~~l~~i~~~~~~-~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 537 FNVAKSLQKIGPILDN-STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHGGGSCH-HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCc-HhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 9998888866544432 3455667786654 5899999999999998764
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1e-14 Score=183.27 Aligned_cols=366 Identities=15% Similarity=0.159 Sum_probs=234.0
Q ss_pred HHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCc-----c
Q 000200 606 TVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK-----K 680 (1871)
Q Consensus 606 i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~-----~ 680 (1871)
+++.|.|.|...|+.++..+.......+.. ...+-|+-+|..- ..|.. .|+.. +++..+.|.. .
T Consensus 15 l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~-~~~~~lip~l~~~--~~~~~-ev~~~-------~~~~l~~~~~~~~~~~ 83 (588)
T d1b3ua_ 15 LIDELRNEDVQLRLNSIKKLSTIALALGVE-RTRSELLPFLTDT--IYDED-EVLLA-------LAEQLGTFTTLVGGPE 83 (588)
T ss_dssp HHHHTTCSCHHHHHHHHHTHHHHHHHSCHH-HHHHTHHHHHHHT--CCCCH-HHHHH-------HHHHHTTCSGGGTSGG
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhCcH-hhHHHHHHHHHHH--hcCcH-HHHHH-------HHHHHHHHHHHcCChh
Confidence 579999999999999999997665543221 1123344444432 23332 23333 3333344422 2
Q ss_pred chhhhccchhhcc-c--cchhhhHHHHHHHHHHHhhchHhHHHHHHH---hhhhcCChhhHHHHHHHHHHHHHHhccCcc
Q 000200 681 CVVLCLLGISERV-A--DIKTRAHAMKCLTTFSEAVGPGFIFERLYK---IMKDHKNPKVLSEGILWMVSAVEDFGVSHL 754 (1871)
Q Consensus 681 ~~~~~l~~lveKl-g--D~K~r~~a~e~L~~~aE~~~~~~V~~~l~~---~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~ 754 (1871)
.+..+++.+ +.+ . |..+|..|.++|..+++..++..+-..+++ .+.+......+..++.-+..++..++-.
T Consensus 84 ~~~~ll~~l-~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~-- 160 (588)
T d1b3ua_ 84 YVHCLLPPL-ESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA-- 160 (588)
T ss_dssp GGGGGHHHH-HHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH--
T ss_pred HHHHHHHHH-HHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHH--
Confidence 233333332 222 2 346899999999999998888776554443 4445666677777776666665554432
Q ss_pred chHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcccccccccc
Q 000200 755 KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST 834 (1871)
Q Consensus 755 ~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~ 834 (1871)
....++..+... +++.||.||.+|...++.+-.++|....
T Consensus 161 ~~~~l~~~~~~l-~~D~~~~VR~~a~~~l~~~~~~~~~~~~--------------------------------------- 200 (588)
T d1b3ua_ 161 VKAELRQYFRNL-CSDDTPMVRRAAASKLGEFAKVLELDNV--------------------------------------- 200 (588)
T ss_dssp HHHHHHHHHHHH-HTCSCHHHHHHHHHHHHHHHHTSCHHHH---------------------------------------
T ss_pred HHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHhcHHHH---------------------------------------
Confidence 235677778888 8999999999999999988776653211
Q ss_pred CCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCC-ccchHHHHhhhccchhHhHHH
Q 000200 835 SSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVM 913 (1871)
Q Consensus 835 ~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~-~geL~~aLk~rl~DsNk~lv~ 913 (1871)
.+.|.+-+..-+.|.+|.+|..|++.+..|+... .+.. ...++..++.-+.|.+..|..
T Consensus 201 ----------------~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~----~~~~~~~~i~~~l~~~~~D~~~~Vr~ 260 (588)
T d1b3ua_ 201 ----------------KSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL----PQEDLEALVMPTLRQAAEDKSWRVRY 260 (588)
T ss_dssp ----------------HHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHS----CHHHHHHHTHHHHHHHHTCSSHHHHH
T ss_pred ----------------HHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccC----CHHHHHHHHHHHHHHhcccccHHHHH
Confidence 0113334555578999999999999999998532 1111 234677788888999999999
Q ss_pred HHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchh--------hhHHHHHHHhcccC
Q 000200 914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDK--------MVPYVTTALTDAKL 985 (1871)
Q Consensus 914 ~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~--------~~~~i~~~L~~~~~ 985 (1871)
.++++++.++..+|+.... ..++|.+...+.|..+.||.++..++..++..++.+. +++.+...+.+.
T Consensus 261 ~~~~~l~~l~~~~~~~~~~--~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~-- 336 (588)
T d1b3ua_ 261 MVADKFTELQKAVGPEITK--TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA-- 336 (588)
T ss_dssp HHHHTHHHHHHHHCHHHHH--HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS--
T ss_pred HHHHhHHHHHHHhhhhhhh--hhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCC--
Confidence 9999999999999987543 4678999999999999999999999999988876432 233333333332
Q ss_pred CcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHH
Q 000200 986 GAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIE 1049 (1871)
Q Consensus 986 ~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~ 1049 (1871)
++..|..+...+...............+++.+..+|.|.+.+||..+...++.+...+|.+.+.
T Consensus 337 ~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~ 400 (588)
T d1b3ua_ 337 NQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLS 400 (588)
T ss_dssp CHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHH
T ss_pred ChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhh
Confidence 4556665544433222111111112223333555667777777777666666666655554433
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.9e-13 Score=178.94 Aligned_cols=722 Identities=15% Similarity=0.141 Sum_probs=408.3
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHcChh-----hhhhhhHHHHHHHHhhhc-CChhhHHHHHHHHHHHHhhcc------h
Q 000200 59 KTVADSNAPVQDKALDALIAYLKAADAD-----AGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA------V 126 (1871)
Q Consensus 59 k~v~DsN~~aqek~leal~~~l~~a~~~-----~~~~~~~~~~~lveK~L~-~r~~tk~~a~e~~l~~vE~e~------~ 126 (1871)
..+.+.|..+++.++.++..+++..... ..+....+++.++. ++. .-+..+..|..++-.++.... .
T Consensus 133 ~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~ll~~ll~-~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~ 211 (888)
T d1qbkb_ 133 SLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQ-FFKHSSPKIRSHAVACVNQFIISRTQALMLHI 211 (888)
T ss_dssp TSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTTTHHHHT-GGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHH-HhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3456667777788888876665532110 11223346666654 343 456777788888777665421 2
Q ss_pred hhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccC-hhHHHhhchhhhcccChhHHHHHHHHHHHHHHh-hCCchh
Q 000200 127 DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRW-IGKDPV 204 (1871)
Q Consensus 127 ~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~~vv~-~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~w-lG~~~l 204 (1871)
+.+++.+.......+|.|...++.++..++..+.-+..+ +..|++.+-..+.+.|..||-+|..+...+..- .....+
T Consensus 212 ~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~ 291 (888)
T d1qbkb_ 212 DSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVL 291 (888)
T ss_dssp HHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTT
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 355566677778889999999999888887777665443 456677777778899999998887664332210 000011
Q ss_pred hHHHhhhchHHHHHHHHHHHHhcCCCCCCcc-hhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCC------
Q 000200 205 KTILFEKMRDTMKKELEVELVNVSGTARPTR-KIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVD------ 277 (1871)
Q Consensus 205 k~~L~~~Lkp~q~keLe~efek~~~~~~P~R-~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~------ 277 (1871)
.+.+ ..+=|..+ ....... .....+. .. ... ....+..+++.|+-...
T Consensus 292 ~~~l-~~l~~~l~-----------~~~~~~~~~~~~~~~---------~~-~~~---~~~~~~~~~i~~~~~~~~~~~~~ 346 (888)
T d1qbkb_ 292 VRHL-PKLIPVLV-----------NGMKYSDIDIILLKG---------DV-EED---ETIPDSEQDIRPRFHRSRTVAQQ 346 (888)
T ss_dssp TTST-TTTTTTTT-----------TSSCCSSTTHHHHTT---------TS-SCC---TTSCCCGGGCCCCCCCCCCCCCC
T ss_pred HHHH-HHHHHHHH-----------HHhhcchHHHHHHhh---------hh-hhh---hhhhhhHHHHHHHHHHHHHHHHH
Confidence 1111 11111100 0000000 0000000 00 000 00000111111110000
Q ss_pred -cccccCCCCc--hhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 000200 278 -PVDILTPLEK--SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR 354 (1871)
Q Consensus 278 -~vdIl~klpk--~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~ 354 (1871)
..+.+..... .++.+......|.-|+.+...|..+.... ...-+..++..+...+.+.|-.+-..|+-+++.|++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~--~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~e 424 (888)
T d1qbkb_ 347 HDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVY--RDELLPHILPLLKELLFHHEWVVKESGILVLGAIAE 424 (888)
T ss_dssp CTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTC--CSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhh--HHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhh
Confidence 0001111110 11222334467999998887665554321 112256688888889999999999999999999999
Q ss_pred HhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhC
Q 000200 355 GLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434 (1871)
Q Consensus 355 gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~ 434 (1871)
|....+.+|...++|.++..+.|.++.||.++..||-.++.+ + ...
T Consensus 425 g~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~------------------------------~----~~~ 470 (888)
T d1qbkb_ 425 GCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW------------------------------V----VSQ 470 (888)
T ss_dssp TSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHH------------------------------H----HSS
T ss_pred hHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHH------------------------------h----hhh
Confidence 999889999999999999999999999988765555443321 1 001
Q ss_pred ChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCc
Q 000200 435 SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSA 514 (1871)
Q Consensus 435 ~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~ 514 (1871)
. ....+..+++.+++.+.|+++.||.+|+.+|..+....|+. +.+++..+- ..+..++...
T Consensus 471 ~---~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~-l~p~~~~il----~~l~~~l~~~----------- 531 (888)
T d1qbkb_ 471 P---PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE-LVPYLAYIL----DTLVFAFSKY----------- 531 (888)
T ss_dssp C---HHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTS-SGGGHHHHH----HHHHHHTTTC-----------
T ss_pred h---hhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHH----HHHHHHHhhh-----------
Confidence 1 11234677889999999999999999999999998887753 444443221 1111111110
Q ss_pred cccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHH
Q 000200 515 RVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEI 594 (1871)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~ 594 (1871)
T Consensus 532 -------------------------------------------------------------------------------- 531 (888)
T d1qbkb_ 532 -------------------------------------------------------------------------------- 531 (888)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhc-CCCccchHHHHHHHHHHHHHHHHh
Q 000200 595 ESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML-PGWSEKNVQVQQQVIEVINYLAAT 673 (1871)
Q Consensus 595 e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~-PgwkesNfqV~~~~leil~~la~~ 673 (1871)
.+++....++++..+.+.+...-......+.++..+... -...++.. .....++.+..++..
T Consensus 532 ----------------~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~le~l~~i~~~ 594 (888)
T d1qbkb_ 532 ----------------QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDK-DLFPLLECLSSVATA 594 (888)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCT-THHHHHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHH
Confidence 000111112222222222211000001122222222111 01111111 112334555544432
Q ss_pred cCCCCccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCc
Q 000200 674 ATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH 753 (1871)
Q Consensus 674 ~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~ 753 (1871)
.+.-... ....+ ...++..+.+.. ...+...........-....+..++..++..++.+|...
T Consensus 595 ~~~~~~~----~~~~~------------~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~ 657 (888)
T d1qbkb_ 595 LQSGFLP----YCEPV------------YQRCVNLVQKTL-AQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNI 657 (888)
T ss_dssp STTTTHH----HHHHH------------HHHHHHHHHHHH-HHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHhh----hHHHH------------HHHHHHHHHHHH-HHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 2110000 00111 111111111111 111111111111223344556677788888888888653
Q ss_pred cch---HhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcccccc
Q 000200 754 LKL---KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830 (1871)
Q Consensus 754 ~~~---K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~ 830 (1871)
.++ ..++..+..+ +.+.++.||++|..++|.+..+.|+.+..|++++=|.
T Consensus 658 ~~~~~~~~l~~~l~~~-l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~-------------------------- 710 (888)
T d1qbkb_ 658 EQLVARSNILTLMYQC-MQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPI-------------------------- 710 (888)
T ss_dssp HHHHHTSCHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHH--------------------------
T ss_pred hhhhhHhhHHHHHHHH-hCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--------------------------
Confidence 222 2355666665 9999999999999999999999999998887554332
Q ss_pred ccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc--chh
Q 000200 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY--DSN 908 (1871)
Q Consensus 831 ~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~--DsN 908 (1871)
+++.+.+..+-+|..|+..+..|....+.-++|-. ..++..|-..+. +.+
T Consensus 711 ---------------------------l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~-~~il~~L~~il~~~~~~ 762 (888)
T d1qbkb_ 711 ---------------------------LGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTP 762 (888)
T ss_dssp ---------------------------HHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGS-HHHHHHHHHHHTCTTCC
T ss_pred ---------------------------HHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHcCCCcc
Confidence 44445556677899999999999876667788875 889999999995 456
Q ss_pred HhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhH-HHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCc
Q 000200 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM-RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGA 987 (1871)
Q Consensus 909 k~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~v-R~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p 987 (1871)
++|...++.++|+|+...+..+.+|...++++++..|.+.+..- ++.+..++-..+.. ||
T Consensus 763 ~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~-------------------~p 823 (888)
T d1qbkb_ 763 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISV-------------------NP 823 (888)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHH-------------------CG
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHH-------------------Cc
Confidence 77999999999999999998899999999999988887644321 22222222222111 12
Q ss_pred chHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHH
Q 000200 988 EGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILER 1066 (1871)
Q Consensus 988 ~~r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~ 1066 (1871)
.+ ++ +.+..++. ++....+..++++.....+|..+-..+|.+.....+..|.|..+.++...
T Consensus 824 ~~---~~-------------~~l~~~~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~ 885 (888)
T d1qbkb_ 824 SG---VI-------------QDFIFFCD-AVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAF 885 (888)
T ss_dssp GG---TG-------------GGHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HH---HH-------------HHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHcCCHHHHHHHHHh
Confidence 10 00 11111222 22333445689999999999999999999988899999998888777654
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=8.2e-09 Score=132.29 Aligned_cols=498 Identities=15% Similarity=0.147 Sum_probs=318.4
Q ss_pred cccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhh----HHHH-
Q 000200 336 DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV----VEDV- 408 (1871)
Q Consensus 336 DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~----~e~i- 408 (1871)
|.|..|...|++|+..+...+...|..+ ...+++.+.+.+++....++.++.+++..++......+... +..+
T Consensus 192 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~ 271 (861)
T d2bpta1 192 ETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALT 271 (861)
T ss_dssp CCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999888877654 46678888899999999999999999999987622223333 3333
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHhhC----------------ChhHHHHhhhhhHHHHHhhhC-------CCCHHHHHHH
Q 000200 409 KTSVKNKVPLVRSLTLNWVTFCIETS----------------SKAAVLKVHKDYVPICMECLN-------DGTPEVRDAA 465 (1871)
Q Consensus 409 ~~al~~KnP~vk~etl~~L~r~l~~~----------------~~~~~~~~~k~~~~~l~k~l~-------Ds~~~VR~aA 465 (1871)
....++.++.+|..++.|+....... ........+..++|.+...+. |.+..+|.++
T Consensus 272 ~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ 351 (861)
T d2bpta1 272 IATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSA 351 (861)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHH
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 35667999999999999887554211 001112334567777777763 4556799999
Q ss_pred HHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCC
Q 000200 466 FSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGK 545 (1871)
Q Consensus 466 ~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (1871)
..++..+...+|...+..+.. .+...+.... ...+..+....+..
T Consensus 352 ~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~~---------------------------~~~~~~a~~~l~~i 396 (861)
T d2bpta1 352 GACLQLFAQNCGNHILEPVLE--------FVEQNITADN---------------------------WRNREAAVMAFGSI 396 (861)
T ss_dssp HHHHHHHHHHHGGGGHHHHHH--------HHHHHTTCSS---------------------------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcchhhhhhhcc--------hhhhhhhhHH---------------------------HHHHHHHHHHHHHH
Confidence 999999999999765543322 2222221100 00000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHH
Q 000200 546 RPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSL 625 (1871)
Q Consensus 546 ~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l 625 (1871)
....+.+.....+..++ +.++..+.+.++..|-.++..+
T Consensus 397 ----------------------------------------~~~~~~~~~~~~l~~~l-~~l~~~l~d~~~~vr~~a~~~l 435 (861)
T d2bpta1 397 ----------------------------------------MDGPDKVQRTYYVHQAL-PSILNLMNDQSLQVKETTAWCI 435 (861)
T ss_dssp ----------------------------------------SSSSCHHHHHHHHHHHH-HHHHHGGGCSCHHHHHHHHHHH
T ss_pred ----------------------------------------HhhcchhhHHHHHHHHH-HHHHHHhcCcchhhhhHHHHHH
Confidence 00012233333332222 3567889999999999998888
Q ss_pred HHHHHhhhcc---chhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccch----hhhccchhh----ccc
Q 000200 626 RQQVEAVQNL---DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV----VLCLLGISE----RVA 694 (1871)
Q Consensus 626 ~~~v~~~~~~---~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~----~~~l~~lve----Klg 694 (1871)
....+..... ......++..+.. ..+.|-.+.......+..+............ ..++..++. .-.
T Consensus 436 ~~l~~~~~~~~~~~~~~~~ll~~l~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 512 (861)
T d2bpta1 436 GRIADSVAESIDPQQHLPGVVQACLI---GLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDN 512 (861)
T ss_dssp HHHHHHHGGGSCTTTTHHHHHHHHHH---HHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHhchhhhhHHhhhhhhHHHHh---ccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhh
Confidence 7666653322 1223444444432 1344556666666666666655443322222 222333322 123
Q ss_pred cchhhhHHHHHHHHHHHhhchHh------HHHHHHHhhhh----cC----------ChhhHHHHHHHHHHHHHHhccCcc
Q 000200 695 DIKTRAHAMKCLTTFSEAVGPGF------IFERLYKIMKD----HK----------NPKVLSEGILWMVSAVEDFGVSHL 754 (1871)
Q Consensus 695 D~K~r~~a~e~L~~~aE~~~~~~------V~~~l~~~~~~----~K----------nPKv~~e~l~wl~~ai~eFG~~~~ 754 (1871)
+..++..+.+++..+++..+..+ +...+...+.. .. ...++..++..+...++.++-...
T Consensus 513 ~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~ 592 (861)
T d2bpta1 513 EFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVE 592 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTG
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHH
Confidence 34678888888888887765432 12222222111 11 123456667777777777775443
Q ss_pred c-hHhHHHHHhhhcC-CCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcccccccc
Q 000200 755 K-LKDLIDFCKDTGL-QSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASE 832 (1871)
Q Consensus 755 ~-~K~li~~~k~~~l-~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~ 832 (1871)
+ ...++..+-.. + ...+..||..+..+++.+-..+|+.+..|++.+-|.+
T Consensus 593 ~~~~~l~~~l~~~-l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l--------------------------- 644 (861)
T d2bpta1 593 PVADMLMGLFFRL-LEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYL--------------------------- 644 (861)
T ss_dssp GGHHHHHHHHHHH-HHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHhhh-cccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH---------------------------
Confidence 3 24566665554 4 4455679999999999999999999888876554444
Q ss_pred ccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccch--hHh
Q 000200 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS--NKN 910 (1871)
Q Consensus 833 ~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~Ds--Nk~ 910 (1871)
+..+.+.++.+|..|+..+..|...-...+.|.. .+++..|-.++.+. +..
T Consensus 645 --------------------------~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~-~~i~~~L~~~l~~~~~~~~ 697 (861)
T d2bpta1 645 --------------------------LKALNQVDSPVSITAVGFIADISNSLEEDFRRYS-DAMMNVLAQMISNPNARRE 697 (861)
T ss_dssp --------------------------HHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH-HHHHHHHHHHHHCTTCCTT
T ss_pred --------------------------HHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhH-HHHHHHHHHHhCCCCCCHH
Confidence 3344455678899999999998865445566654 78888898888654 457
Q ss_pred HHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCch-----------hHHHHHHHHHHHHHHhc
Q 000200 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK-----------HMRECTLTVLDAWLAAV 967 (1871)
Q Consensus 911 lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~-----------~vR~aa~~alda~~~~~ 967 (1871)
+...++++++.|+.++|..|.+|.-.+++-+.+.+..+-. .||++++.++..++...
T Consensus 698 ~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~ 765 (861)
T d2bpta1 698 LKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGL 765 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999988888776543 47888888887776543
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.33 E-value=5.4e-09 Score=133.99 Aligned_cols=608 Identities=10% Similarity=0.103 Sum_probs=356.8
Q ss_pred hhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccccccch--
Q 000200 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSS-- 364 (1871)
Q Consensus 288 ~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y~-- 364 (1871)
..+...+.+..=+-|.-+-+.+..+...- +..+.+-+|+..|-..+. +.+..+...|+.|++.++..++..+..+.
T Consensus 98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~-~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~ 176 (861)
T d2bpta1 98 TNALTALVSIEPRIANAAAQLIAAIADIE-LPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSS 176 (861)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHH-GGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHh-CCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34455566666566766655555554210 112357799999999987 66677888899999999999988766554
Q ss_pred -hhhHHHHHHHh--ccCCHHHHHHHHHHHHHHHHhcCCC-------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhC
Q 000200 365 -RFLLPVLLEKL--KEKKPTVAESLTQTLQAMHKAGCLN-------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434 (1871)
Q Consensus 365 -~~~~~~lLekl--KEKK~~V~eAl~~aLda~~~~~~~~-------l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~ 434 (1871)
..+++.++..+ .+....|+.++..|+..++.+ +.+ ...+++-+..++++.++.+|..++..|...+...
T Consensus 177 ~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~ 255 (861)
T d2bpta1 177 SNNILIAIVQGAQSTETSKAVRLAALNALADSLIF-IKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY 255 (861)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG-CHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH-HhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 45566666655 456678999988888887764 211 1234566778889999999999999998888765
Q ss_pred ChhHHHHhhhh-hHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCC-------HHHHHHHHHHHhcCCCC
Q 000200 435 SKAAVLKVHKD-YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD-------DVRRNKLSEMIAGSGGD 506 (1871)
Q Consensus 435 ~~~~~~~~~k~-~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld-------~~kk~KI~e~~~~~~~~ 506 (1871)
+... .+.+.. +...+.....+.+++||..+.+.+.++....... ......+. ...+..+.+.+..
T Consensus 256 ~~~~-~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~i~~~---- 328 (861)
T d2bpta1 256 YTFM-KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDI--AYELAQFPQSPLQSYNFALSSIKDVVPN---- 328 (861)
T ss_dssp GGGC-HHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHH--HHHHHHCTTCSCCCCCHHHHHHHHHHHH----
T ss_pred HHHH-HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHHH----
Confidence 4322 222233 3345567788999999999999888776442210 00000000 0000001110000
Q ss_pred CCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCC
Q 000200 507 VATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEP 586 (1871)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 586 (1871)
-.... . ...++...
T Consensus 329 ------------------------------l~~~l---~---------------------------------~~~~~~~~ 342 (861)
T d2bpta1 329 ------------------------------LLNLL---T---------------------------------RQNEDPED 342 (861)
T ss_dssp ------------------------------HHHHT---T---------------------------------CCCCC-CC
T ss_pred ------------------------------HHHHH---H---------------------------------Hhhccccc
Confidence 00000 0 00000001
Q ss_pred CCCCHH----HHHHHHhccCc--------HhHHHhhhhccHHHHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHhcCCC
Q 000200 587 SEMSLE----EIESRLGSLIP--------ADTVGQLKSAVWKERLEAISSLRQQVEAVQN--LDQSVEILVRLVCMLPGW 652 (1871)
Q Consensus 587 ~~~s~e----e~e~~~~~l~~--------~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~--~~~~~~~lvr~l~~~Pgw 652 (1871)
...+.. .+-..+...++ +.+...+.+.+|+.|..++..+....+.... .....+-++..+. ...
T Consensus 343 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~--~~l 420 (861)
T d2bpta1 343 DDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSIL--NLM 420 (861)
T ss_dssp CCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH--HGG
T ss_pred hhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH--HHh
Confidence 111111 11111111111 2334677899999999999888755543211 1111112222222 123
Q ss_pred ccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCCh
Q 000200 653 SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNP 732 (1871)
Q Consensus 653 kesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnP 732 (1871)
.|.|..|....+..+..+++..+..... . ....-++..+... ..-+|
T Consensus 421 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~------------------~-------------~~~~~ll~~l~~~--~~~~~ 467 (861)
T d2bpta1 421 NDQSLQVKETTAWCIGRIADSVAESIDP------------------Q-------------QHLPGVVQACLIG--LQDHP 467 (861)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHGGGSCT------------------T-------------TTHHHHHHHHHHH--HTSCH
T ss_pred cCcchhhhhHHHHHHHHHHHHhchhhhh------------------H-------------HhhhhhhHHHHhc--cccCh
Confidence 4555555555555555444321110000 0 0011122222222 24467
Q ss_pred hhHHHHHHHHHHHHHHhccCccc-----hHhHHHHH-hhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHH
Q 000200 733 KVLSEGILWMVSAVEDFGVSHLK-----LKDLIDFC-KDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALL 806 (1871)
Q Consensus 733 Kv~~e~l~wl~~ai~eFG~~~~~-----~K~li~~~-k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall 806 (1871)
+++..++.-+...+..++-.... ...++..+ ....-...+..+|..+...++.+-...++.+..++..+-+...
T Consensus 468 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~ 547 (861)
T d2bpta1 468 KVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVM 547 (861)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 77777776666666655433221 12233322 2221345678899999999999999999999998888777777
Q ss_pred HHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHccc
Q 000200 807 SALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANK 886 (1871)
Q Consensus 807 ~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ank 886 (1871)
..+..-+..... .+... .....|..+...+..+..+++..+.
T Consensus 548 ~~l~~~~~~~~~----------------------------------~~~~~----~~~~~~~l~~~~~~~l~~~~~~~~~ 589 (861)
T d2bpta1 548 DKLGQTMSVDEN----------------------------------QLTLE----DAQSLQELQSNILTVLAAVIRKSPS 589 (861)
T ss_dssp HHHHHHTTSCGG----------------------------------GCCHH----HHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhh----------------------------------hhhhh----HHhHHHHHHHHHHHHHHHHHhcchh
Confidence 666554332200 00100 0112355677777788888876555
Q ss_pred CCCCCCccchHHHHhhhccchh-HhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHH
Q 000200 887 RIQPAGTGELFGGLRGRLYDSN-KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA 965 (1871)
Q Consensus 887 rI~p~~~geL~~aLk~rl~DsN-k~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~ 965 (1871)
.+.|-. .+++..+-..+.+.+ ..+...++.+++.++.++|..|.+|...++|.++..|.|....||..+..++..+..
T Consensus 590 ~~~~~~-~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~ 668 (861)
T d2bpta1 590 SVEPVA-DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp GTGGGH-HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 555543 678888877775444 456678999999999999999999999999999999999999999999999999888
Q ss_pred hccc------hhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCC--cchhhhhhHHhhhcCCCC-----------H
Q 000200 966 AVHL------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKS-----------S 1026 (1871)
Q Consensus 966 ~~gl------~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~--~~~~~~~~p~~~~L~Dr~-----------~ 1026 (1871)
.+|- +.+++.+...|.+++.++..|..++.-|..-....+.. +-+..++..+...+.... .
T Consensus 669 ~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 748 (861)
T d2bpta1 669 SLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQI 748 (861)
T ss_dssp HTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHH
T ss_pred HhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHH
Confidence 7762 23444566666666667888988887766554443321 112222222333333222 3
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 000200 1027 DVRKAAEACIVEILRAGG 1044 (1871)
Q Consensus 1027 dVRkaA~~~L~~~m~~~G 1044 (1871)
+||+++-.++..++..++
T Consensus 749 ~l~~~~~~~~~~i~~~~~ 766 (861)
T d2bpta1 749 KVLEAVLDAYVGIVAGLH 766 (861)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 477777777777766553
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=4.4e-07 Score=116.55 Aligned_cols=621 Identities=14% Similarity=0.140 Sum_probs=347.9
Q ss_pred CChHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHhcc-ccccchhhhHHHHHHHhcc--CCHHHHHHHHHHHHHHHH
Q 000200 321 GDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRT-HFSGSSRFLLPVLLEKLKE--KKPTVAESLTQTLQAMHK 395 (1871)
Q Consensus 321 ~dy~eL~~~Lkk~l~--DsNv~vv~~A~~~i~~lA~gLr~-~F~~y~~~~~~~lLeklKE--KK~~V~eAl~~aLda~~~ 395 (1871)
+.+.|++..|-..+. |.+..+...++.|++.+++.++. .|..|...+++.++..+.+ -...|+.++..++..+..
T Consensus 124 ~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~ 203 (876)
T d1qgra_ 124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (876)
T ss_dssp TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred cccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHH
Confidence 346677887777774 67788888899999999999875 5789999999999999864 456788888777776655
Q ss_pred hcCCC-------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHH
Q 000200 396 AGCLN-------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSV 468 (1871)
Q Consensus 396 ~~~~~-------l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~ 468 (1871)
+ ... ...+++.+...+++.++.+|..++..|.+.+...+.....-+...+.+.+...+.+...+++..+.+.
T Consensus 204 ~-~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 282 (876)
T d1qgra_ 204 F-TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEF 282 (876)
T ss_dssp G-CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred H-hhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 4 111 11355566678889999999999999999888765432222224466778888999999999999887
Q ss_pred HHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCC
Q 000200 469 LAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPV 548 (1871)
Q Consensus 469 l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 548 (1871)
+.++...... .... ..+....... ....... ........-.+.-.... ..
T Consensus 283 ~~~i~~~~~~----~~~~---------~~~~~~~~~~--~~~~~~~----------~~~~~~~~l~~~l~~~~-~~---- 332 (876)
T d1qgra_ 283 WSNVCDEEMD----LAIE---------ASEAAEQGRP--PEHTSKF----------YAKGALQYLVPILTQTL-TK---- 332 (876)
T ss_dssp HHHHHHHHHH----HHHH---------HHHHHHHSSC--CSSCCCC----------HHHHHHHHHHHHHHHHT-TC----
T ss_pred HHHHHHHHHH----HHHH---------hhHHHHhhhh--HHHHHHH----------HHHHHHHHHHHhhHHHH-Hh----
Confidence 7765432211 0000 0111111000 0000000 00000000000000000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCH----HHHHHHHhccCc--------HhHHHhhhhccHH
Q 000200 549 SAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL----EEIESRLGSLIP--------ADTVGQLKSAVWK 616 (1871)
Q Consensus 549 ~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~----ee~e~~~~~l~~--------~~i~~~L~s~~WK 616 (1871)
.+ ++......+. .++-..+...++ +-+...+.+.+|+
T Consensus 333 -----------------------------~~--~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~ 381 (876)
T d1qgra_ 333 -----------------------------QD--ENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR 381 (876)
T ss_dssp -----------------------------CC--SSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHH
T ss_pred -----------------------------cc--cccccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHH
Confidence 00 0000111111 112222222222 2345778899999
Q ss_pred HHHHHHHHHHHHHHhhh--ccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC--CCccchhhhccchhhc
Q 000200 617 ERLEAISSLRQQVEAVQ--NLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK--FPKKCVVLCLLGISER 692 (1871)
Q Consensus 617 ~RL~a~e~l~~~v~~~~--~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~--fs~~~~~~~l~~lveK 692 (1871)
.|-+++..+....+... .......-++..+. +...|.|..|....+..+..+++..+. ........+++.+...
T Consensus 382 ~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~--~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 459 (876)
T d1qgra_ 382 YRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI--ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEG 459 (876)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH--HHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH--HhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHH
Confidence 99999887765544321 11112222333332 345789999999999999988875432 2334455566677766
Q ss_pred cccc-hhhhHHHHHHHHHHHhhch--------------------HhHHHHHHHhhh--hcCChhhHHHHHHHHHHHHHHh
Q 000200 693 VADI-KTRAHAMKCLTTFSEAVGP--------------------GFIFERLYKIMK--DHKNPKVLSEGILWMVSAVEDF 749 (1871)
Q Consensus 693 lgD~-K~r~~a~e~L~~~aE~~~~--------------------~~V~~~l~~~~~--~~KnPKv~~e~l~wl~~ai~eF 749 (1871)
+.+. +++..+..++..+++.... ..++..++..+. ...++.++.+++.-+...+...
T Consensus 460 l~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 539 (876)
T d1qgra_ 460 LSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS 539 (876)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhh
Confidence 6664 4677777777777765321 123333333321 1234555555555555544333
Q ss_pred ccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCch-------hHhhhhcchHHHHHHHHHHHhcCCCCCCC
Q 000200 750 GVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD-------IKGFLADVKPALLSALDAEYEKNPFEGTV 822 (1871)
Q Consensus 750 G~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~-------l~~~l~dlkpall~~ie~EF~K~~~~~~p 822 (1871)
. .+.-+.+..-...++..+-..+... .+..+......+...+..-+.+...+..
T Consensus 540 ~------------------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~- 600 (876)
T d1qgra_ 540 A------------------KDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA- 600 (876)
T ss_dssp C------------------STTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH-
T ss_pred h------------------hHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhh-
Confidence 2 2222333333333333222222111 0111111112222222222222211000
Q ss_pred CCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhc--CCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHH
Q 000200 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL--ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900 (1871)
Q Consensus 823 ~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l--~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aL 900 (1871)
. .+.+.+-+.++.-+ .+.++.+|.+++..+..++..-...+.|-. .++++.|
T Consensus 601 ----------------------~---~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l-~~ii~~l 654 (876)
T d1qgra_ 601 ----------------------L---QISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM-EAFKPFL 654 (876)
T ss_dssp ----------------------H---TTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHH
T ss_pred ----------------------h---hhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHH-HHHHHHH
Confidence 0 00111112222222 234677888999999998875555566654 7788888
Q ss_pred hhhccch-hHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCc--hhHHHHHHHHHHHHHHhccc--hhhhHH
Q 000200 901 RGRLYDS-NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK--KHMRECTLTVLDAWLAAVHL--DKMVPY 975 (1871)
Q Consensus 901 k~rl~Ds-Nk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K--~~vR~aa~~alda~~~~~gl--~~~~~~ 975 (1871)
-..|.+. +..+...|+.+++.++.++|..+.+|.-.+++.++..|.|.. ..+|.+++.|+..++..+|- .++++.
T Consensus 655 ~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~ 734 (876)
T d1qgra_ 655 GIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEV 734 (876)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Confidence 8888554 466888999999999999999999999999999999998865 57999999999999988872 344444
Q ss_pred HHHHHhc---ccCCcc----------hHHHHHHHHHHHh---ccCCC--Cc---chhhhhhHHhh------hcCCCCHHH
Q 000200 976 VTTALTD---AKLGAE----------GRKDLFDWLSKQL---TGLSG--FP---DAAHLLKPASI------AMTDKSSDV 1028 (1871)
Q Consensus 976 i~~~L~~---~~~~p~----------~r~e~l~wL~~~l---~~~~~--~~---~~~~~~~p~~~------~L~Dr~~dV 1028 (1871)
+.+.|.. ....+. +|..++.-...-+ ..... .. ...+.+.+++. ...+++.+|
T Consensus 735 ~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~ 814 (876)
T d1qgra_ 735 VLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGV 814 (876)
T ss_dssp HHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHH
T ss_pred HHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 4444431 111111 2333332222222 11111 11 12333444432 236899999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHH
Q 000200 1029 RKAAEACIVEILRAGGQETIEK 1050 (1871)
Q Consensus 1029 RkaA~~~L~~~m~~~G~~~~~~ 1050 (1871)
+..|-.+|+.++..+|.+....
T Consensus 815 ~~~~~~~i~~l~~~~g~~~~~~ 836 (876)
T d1qgra_ 815 VACAAGLIGDLCTAFGKDVLKL 836 (876)
T ss_dssp HHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999866543
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=1.6e-07 Score=123.31 Aligned_cols=456 Identities=15% Similarity=0.176 Sum_probs=293.2
Q ss_pred ccccCcCchhHHHHHHHHHHHHhhhcCCCCchhhhhhhhchhhhcCCCCHHHHHHHHHHHHHHHHHcChh-hhhhhhHHH
Q 000200 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADAD-AGRYAKEVC 95 (1871)
Q Consensus 17 ~erl~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~DsN~~aqek~leal~~~l~~a~~~-~~~~~~~~~ 95 (1871)
.+.+.|.+|+.|-+|.--+....++..+.-.+-+....+.+-..+.|.|+.+++.++.++..|.+..... .......++
T Consensus 401 ~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l 480 (888)
T d1qbkb_ 401 KELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLM 480 (888)
T ss_dssp HHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHH
T ss_pred HHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhH
Confidence 4688999999999998777654432111111122222334456789999999999999988777653221 223356678
Q ss_pred HHHHHhhhcCChhhHHHHHHHHHHHHhhcc------hhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccCh---
Q 000200 96 DAIAAKCLTGRPKTVEKAQAVFMLWVELEA------VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP--- 166 (1871)
Q Consensus 96 ~~lveK~L~~r~~tk~~a~e~~l~~vE~e~------~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~~vv~~--- 166 (1871)
+.++..++.+.++.++.|..++-.++|..+ .+.+++.++..+..-+.+.......++..++..-|......
T Consensus 481 ~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~ 560 (888)
T d1qbkb_ 481 TELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI 560 (888)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHH
Confidence 888888777778888888888888887632 24667777888877677777777777777777777644322
Q ss_pred hHHHhhchhhh---cccChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHH----hc-CC--CCCCcc-
Q 000200 167 KRILKMLPELF---DHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELV----NV-SG--TARPTR- 235 (1871)
Q Consensus 167 K~ilk~l~~lf---~~~dk~VR~ea~~L~vely~wlG~~~lk~~L~~~Lkp~q~keLe~efe----k~-~~--~~~P~R- 235 (1871)
..++..+...+ .+.++... .....+..+...+|.. +.+.. ..+-+.-+..+...+. .. .+ ...|..
T Consensus 561 ~~l~~~l~~~~~~~~~~~~~~~-~~le~l~~i~~~~~~~-~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 637 (888)
T d1qbkb_ 561 QMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSG-FLPYC-EPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKD 637 (888)
T ss_dssp HHHHHHHHHHHTTSCTTCTTHH-HHHHHHHHHHHHSTTT-THHHH-HHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTH
T ss_pred HHHHHHHHHHHHhcccchHHHH-HHHHHHHHHHHHhHHH-HhhhH-HHHHHHHHHHHHHHHHHHHHHhcccccccchhHH
Confidence 22333333333 23444433 4455556666777764 33322 1111111222222211 11 00 011111
Q ss_pred hhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhh-
Q 000200 236 KIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS- 314 (1871)
Q Consensus 236 ~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~- 314 (1871)
++...-+. ........ ...+.+ ++...+ +. +-+...+.+..+..|..|+.-+..+..
T Consensus 638 ~~~~~l~~---l~~l~~~l------------~~~~~~--~~~~~~----l~-~~l~~~l~~~~~~vr~~a~~llgdl~~~ 695 (888)
T d1qbkb_ 638 FMIVALDL---LSGLAEGL------------GGNIEQ--LVARSN----IL-TLMYQCMQDKMPEVRQSSFALLGDLTKA 695 (888)
T ss_dssp HHHHHHHH---HHHHHHHH------------TTTTHH--HHHTSC----HH-HHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHh------------hhhhhh--hhhHhh----HH-HHHHHHhCCCChHHHHHHHHHHHHHHHh
Confidence 11000000 00000000 001111 111111 11 235566788889999999887766653
Q ss_pred cCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCC--HHHHHHHHHHHHH
Q 000200 315 TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK--PTVAESLTQTLQA 392 (1871)
Q Consensus 315 ~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK--~~V~eAl~~aLda 392 (1871)
.+.-..+-..+++..|-+-+.|.+..|...|+.++|.||..++..|.+|...+++.++..+.+-+ .+|.+.+..||--
T Consensus 696 ~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgr 775 (888)
T d1qbkb_ 696 CFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGR 775 (888)
T ss_dssp CGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence 22211223567888899999999999999999999999999999999999999999999998644 4588877778776
Q ss_pred HHHhcC---C--ChhhhHHHHHHHhhc-CCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHH
Q 000200 393 MHKAGC---L--NLVDVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAF 466 (1871)
Q Consensus 393 ~~~~~~---~--~l~~~~e~i~~al~~-KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~ 466 (1871)
+... | + .+++++...+.+|.+ ++..-|..++..|...+...+...... +..++..+.. ..+..++++++..
T Consensus 776 l~~~-~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~~~-l~~~~~~i~~-~~~~~~~~~~~~~ 852 (888)
T d1qbkb_ 776 LGYV-CPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQD-FIFFCDAVAS-WINPKDDLRDMFC 852 (888)
T ss_dssp HHHH-CHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHTT-CSSCCHHHHHHHH
T ss_pred HHHH-CHHHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHHHH-HHHHHHHHHh-cCCCCHHHHHHHH
Confidence 6554 2 1 367888888888876 456778899999999998776554422 2344554444 3456799999999
Q ss_pred HHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHH
Q 000200 467 SVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500 (1871)
Q Consensus 467 ~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~ 500 (1871)
..|..+...+|......++..|++..+.++.+.|
T Consensus 853 ~~l~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~y 886 (888)
T d1qbkb_ 853 KILHGFKNQVGDENWRRFSDQFPLPLKERLAAFY 886 (888)
T ss_dssp HHHHHHHHHHCHHHHHHHHHSSCHHHHHHHHHHC
T ss_pred HHHHHHHHHcCcHhHHHHHHcCCHHHHHHHHHhh
Confidence 9999999999988889999999999999998876
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.3e-05 Score=102.65 Aligned_cols=617 Identities=14% Similarity=0.127 Sum_probs=362.6
Q ss_pred hhhhhhhc--cChHHHHHHHHHHHHhhhcCC--CCCCChHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHhcccccc
Q 000200 289 GFWEGVKA--TKWSERKDAVAELTKLASTKR--IAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSG 362 (1871)
Q Consensus 289 ~f~~~l~s--~KWkeRkEaLe~l~~l~~~pK--i~~~dy~eL~~~Lkk~l~--DsNv~vv~~A~~~i~~lA~gLr~~F~~ 362 (1871)
.+.+.+.+ ....-|..+|..|..++..-+ .......+++..+-..+. |.+..+...|++++..+...+...|..
T Consensus 132 ~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~ 211 (876)
T d1qgra_ 132 QLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK 211 (876)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTS
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 34455544 347778888888877764211 112334567777777774 788999999999999998888877654
Q ss_pred c--hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC----hhh-hHHHHHHHhhcCCchhHHHHHHHHHHHHhhC-
Q 000200 363 S--SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----LVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETS- 434 (1871)
Q Consensus 363 y--~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~----l~~-~~e~i~~al~~KnP~vk~etl~~L~r~l~~~- 434 (1871)
+ ...++..+.+.+.+.-..|+.++.++|..++....-- +.+ +..-+...+.+.++.++.+++.|+.......
T Consensus 212 ~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 291 (876)
T d1qgra_ 212 ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM 291 (876)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3 4457777888889999999999999999998752111 112 2233456778889999988887765443211
Q ss_pred -------------------ChhHHHHhhhhhHHHHHhhh-------CCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcC
Q 000200 435 -------------------SKAAVLKVHKDYVPICMECL-------NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 488 (1871)
Q Consensus 435 -------------------~~~~~~~~~k~~~~~l~k~l-------~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~L 488 (1871)
...........++|.+...+ +|.+..+|.+|..++..+....|...+..++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-- 369 (876)
T d1qgra_ 292 DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLP-- 369 (876)
T ss_dssp HHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHH--
T ss_pred HHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhhhhHH--
Confidence 00011122344556666555 33445699999999999999999765543332
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000200 489 DDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDG 568 (1871)
Q Consensus 489 d~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~ 568 (1871)
.+.+.+.... ...+.......+..
T Consensus 370 ------~i~~~l~~~~---------------------------~~~r~~~~~~l~~~----------------------- 393 (876)
T d1qgra_ 370 ------FIKEHIKNPD---------------------------WRYRDAAVMAFGCI----------------------- 393 (876)
T ss_dssp ------HHHHHTTCSS---------------------------HHHHHHHHHHHHHT-----------------------
T ss_pred ------HHHHhhccch---------------------------HHHHHHHHHHHHhh-----------------------
Confidence 3333332100 00000000000000
Q ss_pred CCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhc-c--chhHHHHHHH
Q 000200 569 SGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN-L--DQSVEILVRL 645 (1871)
Q Consensus 569 ~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~-~--~~~~~~lvr~ 645 (1871)
....+.+........++ +.+...+.+.+...|-.++..+....+.... . ....+.++..
T Consensus 394 -----------------~~~~~~~~~~~~~~~~~-~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 455 (876)
T d1qgra_ 394 -----------------LEGPEPSQLKPLVIQAM-PTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQC 455 (876)
T ss_dssp -----------------SSSSCHHHHHHHHHHHH-HHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHH
T ss_pred -----------------hhhhhHHHHHHHHHHHH-HHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHH
Confidence 00112333333333332 4567888999999999999888777665322 1 2223445555
Q ss_pred HHhcCCCccchHHHHHHHHHHHHHHHHhcCCC--------------Cccchhhhccchhhcccc-----chhhhHHHHHH
Q 000200 646 VCMLPGWSEKNVQVQQQVIEVINYLAATATKF--------------PKKCVVLCLLGISERVAD-----IKTRAHAMKCL 706 (1871)
Q Consensus 646 l~~~PgwkesNfqV~~~~leil~~la~~~~~f--------------s~~~~~~~l~~lveKlgD-----~K~r~~a~e~L 706 (1871)
+.. .-++|..|.......+..+.+..... -......++..+..-+.+ ...+..+.+.+
T Consensus 456 l~~---~l~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l 532 (876)
T d1qgra_ 456 LIE---GLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESL 532 (876)
T ss_dssp HHH---HTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHH
T ss_pred HHH---HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHH
Confidence 442 22446677777777777766532111 111222233333333322 23566666666
Q ss_pred HHHHHhhch---Hh-------HHHHHHHhhhh--c----CChhhHHHHHHHHHHHHHHhccCccc------hHhHHHHHh
Q 000200 707 TTFSEAVGP---GF-------IFERLYKIMKD--H----KNPKVLSEGILWMVSAVEDFGVSHLK------LKDLIDFCK 764 (1871)
Q Consensus 707 ~~~aE~~~~---~~-------V~~~l~~~~~~--~----KnPKv~~e~l~wl~~ai~eFG~~~~~------~K~li~~~k 764 (1871)
..+.....- .+ +++.+...+.. + ..+....++..++...+..+.-...+ ...++..+.
T Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~ 612 (876)
T d1qgra_ 533 MEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLL 612 (876)
T ss_dssp HHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHH
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHH
Confidence 665543221 11 22222222111 1 11223445555666555544332111 134455554
Q ss_pred hhcCCC--ccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCC
Q 000200 765 DTGLQS--SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 842 (1871)
Q Consensus 765 ~~~l~~--sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~ 842 (1871)
.. +.. .+..||..+...++.+-..+|+.+..|+..+-|.++..+...
T Consensus 613 ~~-l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~------------------------------ 661 (876)
T d1qgra_ 613 RM-FQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY------------------------------ 661 (876)
T ss_dssp HH-C-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC------------------------------
T ss_pred HH-HhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCC------------------------------
Confidence 44 543 456799999999999999999999998877666665555321
Q ss_pred CCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchh--HhHHHHHHHHHH
Q 000200 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN--KNLVMATLITLG 920 (1871)
Q Consensus 843 d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsN--k~lv~~al~ii~ 920 (1871)
.++.+|..|++-+..+.......+.|-. .+++..|-.++.|.| ..+...++.++|
T Consensus 662 ----------------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~k~~~~~~i~ 718 (876)
T d1qgra_ 662 ----------------------AEYQVCLAAVGLVGDLCRALQSNIIPFC-DEVMQLLLENLGNENVHRSVKPQILSVFG 718 (876)
T ss_dssp ----------------------TTHHHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHTCTTSCGGGHHHHHHHHH
T ss_pred ----------------------CcHHHHHHHHHHHHHHHHHhHHhhhhhH-HHHHHHHHHHhCCccCCHHHHHHHHHHHH
Confidence 2356799999999888876667777754 788889999997665 678899999999
Q ss_pred HHHHhcChhHHhhhhhhhHHHHHHhccCc-----------hhHHHHHHHHHHHHHHhcc------------chhhhHHHH
Q 000200 921 AVASAMGPAVEKSSKGVLSDILKCLGDNK-----------KHMRECTLTVLDAWLAAVH------------LDKMVPYVT 977 (1871)
Q Consensus 921 ~lA~amG~~~~k~~k~l~~~il~~l~D~K-----------~~vR~aa~~alda~~~~~g------------l~~~~~~i~ 977 (1871)
.|+.++|..|.+|...+++-+...+..+- ..+|++++.|...++.... +.+.++.|.
T Consensus 719 ~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 798 (876)
T d1qgra_ 719 DIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFIL 798 (876)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHH
Confidence 99999999999999999998877666321 1367777777666654321 222233333
Q ss_pred HHHh----cccCCcchHHH---HHHHHHHHhccCCCCc--chhhhhhHHhh-hcCCCCHHHHHHHHHHHHHH
Q 000200 978 TALT----DAKLGAEGRKD---LFDWLSKQLTGLSGFP--DAAHLLKPASI-AMTDKSSDVRKAAEACIVEI 1039 (1871)
Q Consensus 978 ~~L~----~~~~~p~~r~e---~l~wL~~~l~~~~~~~--~~~~~~~p~~~-~L~Dr~~dVRkaA~~~L~~~ 1039 (1871)
..+. ++..+...+.. +++-|.+.+..-- .. ...+.+.+++. ++.+...+.|..|.-+...+
T Consensus 799 ~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~-~~~~~~~~~v~~ll~~~~~s~~~~~~~~a~~~~~~~ 869 (876)
T d1qgra_ 799 SFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDV-LKLVEARPMIHELLTEGRRSKTNKAKTLARWATKEL 869 (876)
T ss_dssp HHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHH-HHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHhcChHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3322 23334444444 4444555553210 01 11244555443 67888899999887655443
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=1.5e-05 Score=93.61 Aligned_cols=385 Identities=13% Similarity=0.144 Sum_probs=212.7
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchh--HhHHHHHHHHHHHHHHhcChhHH---
Q 000200 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN--KNLVMATLITLGAVASAMGPAVE--- 931 (1871)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsN--k~lv~~al~ii~~lA~amG~~~~--- 931 (1871)
.+++++-++|=.+|++|-+.++++.... .-+.+..|-..+.|.| .++-..|+-++...-..-.+...
T Consensus 4 ~il~~~~s~d~~~r~~A~~~L~~~~~~~--------~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~ 75 (458)
T d1ibrb_ 4 TILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 75 (458)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHhcC--------chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHH
Confidence 3677888899999999999999999742 2455666666675544 34545565554433322111111
Q ss_pred ---------hhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHh-cc---chhhhHHHHHHHhcccCCcchHHHHHHHHH
Q 000200 932 ---------KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA-VH---LDKMVPYVTTALTDAKLGAEGRKDLFDWLS 998 (1871)
Q Consensus 932 ---------k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~-~g---l~~~~~~i~~~L~~~~~~p~~r~e~l~wL~ 998 (1871)
.....+...++..+.+....+|.++ .++-.++.. .+ ...+++.+...+.++..++..|...+.-+.
T Consensus 76 ~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 154 (458)
T d1ibrb_ 76 QQRWLAIDANARREVKNYVLQTLGTETYRPSSAS-QCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIG 154 (458)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHH-HHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred hhhhccCCHHHHHHHHHHHHhccCCCcHHHHHHH-HHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 1122355667888888777666654 444444444 33 245677777777766555666666666655
Q ss_pred HHhccCCC---CcchhhhhhHHhhhcC--CCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCC
Q 000200 999 KQLTGLSG---FPDAAHLLKPASIAMT--DKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGAS 1073 (1871)
Q Consensus 999 ~~l~~~~~---~~~~~~~~~p~~~~L~--Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~ 1073 (1871)
........ ......++..++..+. |.+.+||.+|-.++..++......... ......+...+..
T Consensus 155 ~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~-------~~~~~~~~~~l~~---- 223 (458)
T d1ibrb_ 155 YICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK-------ESERHFIMQVVCE---- 223 (458)
T ss_dssp HHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS-------HHHHHHHHHHHHH----
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhh-------HHHHHHhHhhHHH----
Confidence 44433332 2234445556777774 677899999888877665433211000 0000111111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChHHHHhhhhcccccc
Q 000200 1074 QVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFE 1153 (1871)
Q Consensus 1074 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~~~~~~kw~f~ 1153 (1871)
T Consensus 224 -------------------------------------------------------------------------------- 223 (458)
T d1ibrb_ 224 -------------------------------------------------------------------------------- 223 (458)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHh-HHHHHHHHHHhccccchHHHHHHh
Q 000200 1154 DPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV-LDILLRWFVLQFCKSNTTCLLKVL 1232 (1871)
Q Consensus 1154 ~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~~-lDlllkw~tlr~~dtN~~vl~k~L 1232 (1871)
.+-+.|+.-+..+++.|...+...++.+... .+++...+...+.+.+..+....+
T Consensus 224 ------------------------~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~ 279 (458)
T d1ibrb_ 224 ------------------------ATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGI 279 (458)
T ss_dssp ------------------------HTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHH
T ss_pred ------------------------HhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 1111122222222222222111111111111 122222222233444555555555
Q ss_pred hhhHHHHHHHHhc-------------CCcc----cHhHHhhhhhHHHHhh-------CCChHHHHHHHHHHHHHHhhccC
Q 000200 1233 EFLPELFDTLRDE-------------GYSL----TESEAAVFLPCLVEKS-------GHNIEKVREKMRELTKQIVNFYS 1288 (1871)
Q Consensus 1233 e~l~~l~~~l~~~-------------~y~l----sd~Ea~~flP~Lv~K~-------Gd~k~~vR~~vr~i~~~~~~vyp 1288 (1871)
+++..+....... ...+ ...-...++|.+..-. .|....+|.....++..++..++
T Consensus 280 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~ 359 (458)
T d1ibrb_ 280 EFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE 359 (458)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhcc
Confidence 5555444332111 0111 1112223445444433 23444688888888888888887
Q ss_pred cc---chHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCcccC--ccchHHHHHHHhccCChhHHHHHHHHHHHHHHHhc
Q 000200 1289 AT---KTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISG--QLKSLQIVASLTAERDGEIRKAALNTLATGYKILG 1363 (1871)
Q Consensus 1289 ~s---kvf~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v~~--~~Kal~~ia~~i~drD~~VR~AALn~l~~~y~~~G 1363 (1871)
.. .+++++.+++.+.||++|..++.-+|.+.+.-+-.... -...++.+-.++.|.++.||.+|+.||+..-...|
T Consensus 360 ~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~ 439 (458)
T d1ibrb_ 360 DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 439 (458)
T ss_dssp TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence 43 45567778999999999999999999987643322212 23467999999999999999999999997755555
Q ss_pred hh
Q 000200 1364 ED 1365 (1871)
Q Consensus 1364 d~ 1365 (1871)
+.
T Consensus 440 ~~ 441 (458)
T d1ibrb_ 440 EA 441 (458)
T ss_dssp GG
T ss_pred cc
Confidence 43
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=8.3e-05 Score=87.08 Aligned_cols=293 Identities=12% Similarity=0.098 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHhhchH----hHHHHHHHhhh-hcCChhhHHHHHHHHHHHHHHhccCccc--hHhHHHHHhhhcCC--Cc
Q 000200 701 HAMKCLTTFSEAVGPG----FIFERLYKIMK-DHKNPKVLSEGILWMVSAVEDFGVSHLK--LKDLIDFCKDTGLQ--SS 771 (1871)
Q Consensus 701 ~a~e~L~~~aE~~~~~----~V~~~l~~~~~-~~KnPKv~~e~l~wl~~ai~eFG~~~~~--~K~li~~~k~~~l~--~s 771 (1871)
.+..++..++....+. -++..+...+. ...++.++..++..+.......+..... ...++..+-.. +. ++
T Consensus 107 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~-l~~~~~ 185 (458)
T d1ibrb_ 107 SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQG-MRKEEP 185 (458)
T ss_dssp SHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHH-HSTTCC
T ss_pred HHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH-hccccc
Confidence 3445555555554332 35556666543 3455677777888887777665544332 34556665554 54 46
Q ss_pred cHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccc
Q 000200 772 AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDIS 851 (1871)
Q Consensus 772 N~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs 851 (1871)
+..||.+|++.++.+..+..+...... ..+
T Consensus 186 ~~~v~~~a~~~l~~~~~~~~~~~~~~~--~~~------------------------------------------------ 215 (458)
T d1ibrb_ 186 SNNVKLAATNALLNSLEFTKANFDKES--ERH------------------------------------------------ 215 (458)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHTSHH--HHH------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHhhhhhhhhHH--HHH------------------------------------------------
Confidence 788999999999888765432211100 000
Q ss_pred cCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChh--
Q 000200 852 GKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA-- 929 (1871)
Q Consensus 852 ~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~-- 929 (1871)
.+.+.+..-+.+.+|.+|..+++.+..|++...+.+.|....-+...+...+.+.+..++..|+.++..++..-...
T Consensus 216 -~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~ 294 (458)
T d1ibrb_ 216 -FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAI 294 (458)
T ss_dssp -HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01223444567789999999999999999877777888763333444556668889999999999988887543111
Q ss_pred -------------------HHhhhhhhhHHHHHHhc-------cCchhHHHHHHHHHHHHHHhcc---chhhhHHHHHHH
Q 000200 930 -------------------VEKSSKGVLSDILKCLG-------DNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTAL 980 (1871)
Q Consensus 930 -------------------~~k~~k~l~~~il~~l~-------D~K~~vR~aa~~alda~~~~~g---l~~~~~~i~~~L 980 (1871)
+..+...+.|.+...+. |....+|.++..++.......| +..+++.+...|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l 374 (458)
T d1ibrb_ 295 EASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHI 374 (458)
T ss_dssp HHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHT
T ss_pred hhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHh
Confidence 12234445555555543 4555799999999999998887 334444555655
Q ss_pred hcccCCcchHHHHHHHHHHHhccCCC---CcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHH
Q 000200 981 TDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQET 1047 (1871)
Q Consensus 981 ~~~~~~p~~r~e~l~wL~~~l~~~~~---~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~ 1047 (1871)
.++ ++..|...+.-|..-...... .+....++..++.+|+|.++.||.+|..+|+.+...++...
T Consensus 375 ~s~--~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~ 442 (458)
T d1ibrb_ 375 KNP--DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA 442 (458)
T ss_dssp TCS--SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGC
T ss_pred cCC--CHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 554 567777666555433222221 23345566668889999999999999999999998887553
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.84 E-value=0.00055 Score=80.20 Aligned_cols=372 Identities=11% Similarity=0.122 Sum_probs=218.2
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhhhc--cc-----hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC
Q 000200 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQN--LD-----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1871)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~--~~-----~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~ 676 (1871)
++++.+|.+.|--.+++|...+.+.+..... .+ .....|++++. +..|..|+..+..++..++.....
T Consensus 16 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~-----~~~~~~v~~~a~~~L~~la~~~~~ 90 (434)
T d1q1sc_ 16 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 90 (434)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTT-----CGGGHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHc-----cCCCHHHHHHHHHHHHHHhcCChh
Confidence 4567888999999999999999876643111 11 12345566553 234567888899999888753211
Q ss_pred CCccch--hhhccchhhcccc--chhhhHHHHHHHHHHHhh--chHhH-----HHHHHHhhhhcCChhh---HHHHHHHH
Q 000200 677 FPKKCV--VLCLLGISERVAD--IKTRAHAMKCLTTFSEAV--GPGFI-----FERLYKIMKDHKNPKV---LSEGILWM 742 (1871)
Q Consensus 677 fs~~~~--~~~l~~lveKlgD--~K~r~~a~e~L~~~aE~~--~~~~V-----~~~l~~~~~~~KnPKv---~~e~l~wl 742 (1871)
.+..+ .-+++.++.-+.. ..+++.+..+|..++... .-..+ +..++..+........ ....+.|.
T Consensus 91 -~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 169 (434)
T d1q1sc_ 91 -QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 169 (434)
T ss_dssp -HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred -hhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHH
Confidence 11111 1234444444443 568888888888877421 11222 2344444332222222 22334443
Q ss_pred HHHHHHhccCc---cchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCC
Q 000200 743 VSAVEDFGVSH---LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFE 819 (1871)
Q Consensus 743 ~~ai~eFG~~~---~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~ 819 (1871)
...+-...... .....+++.+... +.+.|+.+|..|...++.+...-.. ....+ ..
T Consensus 170 l~~~~~~~~~~~~~~~~~~~l~~l~~l-l~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~---------------~~---- 228 (434)
T d1q1sc_ 170 LSNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGPNE-RIEMV---------------VK---- 228 (434)
T ss_dssp HHHHTCCCTTCCCHHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTSSCHH-HHHHH---------------HT----
T ss_pred HHHHhhcccccchhhhhhhHHHHHHHH-HhccccchhhhHHhhhcccchhhhh-hHHHH---------------hh----
Confidence 33332222111 1246678888887 9999999999998877665321110 00100 00
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCC-ccchHH
Q 000200 820 GTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFG 898 (1871)
Q Consensus 820 ~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~-~geL~~ 898 (1871)
..+-+.+++-+.+.++..+..++..+..++.. +....... -.+.+.
T Consensus 229 --------------------------------~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~-~~~~~~~~~~~~~~~ 275 (434)
T d1q1sc_ 229 --------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTG-TDEQTQKVIDAGALA 275 (434)
T ss_dssp --------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTGGG
T ss_pred --------------------------------cccchhcccccccchhhhhhchhhhhhhHHhh-hhHHHHHHHhccccc
Confidence 01234577778889999999999999888742 11111110 022455
Q ss_pred HHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchh-----
Q 000200 899 GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDK----- 971 (1871)
Q Consensus 899 aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~----- 971 (1871)
.|..-|.+.+..+...|+.++..++.. ......+ ...++|.++..+.+....+|..+..++.......+.+.
T Consensus 276 ~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~ 354 (434)
T d1q1sc_ 276 VFPSLLTNPKTNIQKEATWTMSNITAG-RQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLV 354 (434)
T ss_dssp GHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHhhcccchhhhHHHHHHHhhhccc-cchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 666777888999999999999998764 2333332 34588999999999999999999999988776544322
Q ss_pred ---hhHHHHHHHhcccCCcchHHHHHHHHHHHhc---cCCCCcchhhh-----hhHHhhhc-CCCCHHHHHHHHHHHHH
Q 000200 972 ---MVPYVTTALTDAKLGAEGRKDLFDWLSKQLT---GLSGFPDAAHL-----LKPASIAM-TDKSSDVRKAAEACIVE 1038 (1871)
Q Consensus 972 ---~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~---~~~~~~~~~~~-----~~p~~~~L-~Dr~~dVRkaA~~~L~~ 1038 (1871)
+++.+...|.+. +++.+..++.=|..-+. ........... ....+..| .+.|.+||+.|..+|..
T Consensus 355 ~~~~i~~L~~ll~~~--d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~ 431 (434)
T d1q1sc_ 355 HCGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 431 (434)
T ss_dssp HTTCHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 244566666543 46667766654443322 22221111111 11223334 78899999999988753
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=0.11 Score=62.24 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=106.5
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHH--HhccccccchhhhHHHHHHHhcc-CCHHHHHHHHHHHHHHHHhcCCChh-
Q 000200 327 CRTLKKLITDVNIAVAVEAIQAIGNLAR--GLRTHFSGSSRFLLPVLLEKLKE-KKPTVAESLTQTLQAMHKAGCLNLV- 402 (1871)
Q Consensus 327 ~~~Lkk~l~DsNv~vv~~A~~~i~~lA~--gLr~~F~~y~~~~~~~lLeklKE-KK~~V~eAl~~aLda~~~~~~~~l~- 402 (1871)
+..|.+.+.|.+..+...|+.+++.|++ ..|..|.. ...+++.++..++. ....+++.+..+|-.+... .....
T Consensus 19 ip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~-~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~-~~~~~~ 96 (529)
T d1jdha_ 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMR-SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLA 96 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHT-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHH-hhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHH
Confidence 6778888998899999999999999985 33333333 24578999998865 4578888888888766432 10111
Q ss_pred ----hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHh-hhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Q 000200 403 ----DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1871)
Q Consensus 403 ----~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~-~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk 474 (1871)
..++.+...|++.++.++..++.-|.......+... ..+ -...+|.++..|++.++++|..++.+|..+..
T Consensus 97 i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 172 (529)
T d1jdha_ 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH-HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhh-hHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhh
Confidence 235677788999999999999988887765443221 111 13478999999999999999999999987753
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=0.00022 Score=79.47 Aligned_cols=185 Identities=12% Similarity=0.077 Sum_probs=132.9
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCC--CCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccc-cchh
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIA--PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSR 365 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~--~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~-~y~~ 365 (1871)
..-....+..+.+|..||+.|..|+.+.-.. --..|-+...|..++.+.|..|...|+.+|+.++..-...-. -...
T Consensus 21 ~~~~~~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~ 100 (264)
T d1xqra1 21 TAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL 100 (264)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHhhcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445567788999999999999887432111 012344555566778899999999999999999975332111 1234
Q ss_pred hhHHHHHHHhc-cCCHHHHHHHHHHHHHHHHhcCCC-h-----hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhH
Q 000200 366 FLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 438 (1871)
Q Consensus 366 ~~~~~lLeklK-EKK~~V~eAl~~aLda~~~~~~~~-l-----~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~ 438 (1871)
..+|.++..+. +.-+.|+..+..||..++.. +.. . ...++.+...+++.++.++..++..|...+...+...
T Consensus 101 ~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 179 (264)
T d1xqra1 101 GALRKLLRLLDRDACDTVRVKALFAISCLVRE-QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK 179 (264)
T ss_dssp THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred CchHHHHHHhhcCCCHHHHHHHHHHHHHHhcc-chhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHH
Confidence 67899999884 67788999999999888764 211 1 1235777889999999999998888887765543211
Q ss_pred HHHhhh-hhHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000200 439 VLKVHK-DYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1871)
Q Consensus 439 ~~~~~k-~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1871)
..+.+ ..+|.++..+.+.+++||+.|..+|+.|...
T Consensus 180 -~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~ 216 (264)
T d1xqra1 180 -GTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 216 (264)
T ss_dssp -HHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred -HHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 12222 4789999999999999999999999988643
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.38 E-value=0.0017 Score=71.03 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=43.0
Q ss_pred HHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHH
Q 000200 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGAL 786 (1871)
Q Consensus 721 ~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~l 786 (1871)
++++. .++.||.|+..++..|. .+|- ...++.+... +.+.|+.||..|+..|+.+
T Consensus 23 ~L~~~-L~d~~~~vR~~A~~~L~----~~~~-----~~~~~~l~~~-l~d~~~~vr~~a~~aL~~l 77 (276)
T d1oyza_ 23 ELFRL-LDDHNSLKRISSARVLQ----LRGG-----QDAVRLAIEF-CSDKNYIRRDIGAFILGQI 77 (276)
T ss_dssp HHHHH-TTCSSHHHHHHHHHHHH----HHCC-----HHHHHHHHHH-HTCSSHHHHHHHHHHHHHS
T ss_pred HHHHH-hcCCCHHHHHHHHHHHH----hhCC-----HhHHHHHHHH-HcCCCHHHHHHHHHHHHHh
Confidence 45555 47999999999998664 4553 4567777777 8999999999999988765
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.33 E-value=0.023 Score=67.85 Aligned_cols=184 Identities=13% Similarity=0.111 Sum_probs=131.0
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCC---hHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccccccc-
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGD---FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS- 363 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~d---y~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y- 363 (1871)
.+...+.+..=..+..++..+.++++..+-.+-+ -+.++..|-..+. +.|..+...|+.|+..|+.+-.......
T Consensus 80 ~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~ 159 (503)
T d1wa5b_ 80 QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVV 159 (503)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5778888888899999999998877543322211 1234567777787 8888999999999999997654222111
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChh------hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh
Q 000200 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1871)
Q Consensus 364 ~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~------~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~ 437 (1871)
-..++|.++..+......|++.+..||-.++.. +...- .+++.+...+.+.++.++..++..|..........
T Consensus 160 ~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~-~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~ 238 (503)
T d1wa5b_ 160 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGD-STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 238 (503)
T ss_dssp HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC
T ss_pred hCCChHHHHHHhcCCChhHHHHHHHHHHHHhhh-hHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccc
Confidence 345789999999999999999998888887653 11111 23466777888999988877665555544332211
Q ss_pred HHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 438 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 438 ~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
........++|.+++++...+++++..++.+|..+.
T Consensus 239 ~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~ 274 (503)
T d1wa5b_ 239 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 274 (503)
T ss_dssp CCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc
Confidence 111234678999999999999999999998887765
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.25 E-value=0.001 Score=77.87 Aligned_cols=272 Identities=18% Similarity=0.189 Sum_probs=162.5
Q ss_pred HHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhh--hcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCC
Q 000200 759 LIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 836 (1871)
Q Consensus 759 li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l--~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~ 836 (1871)
.++.+... |.+.++.+|..|+..|+.+-. -++..+..+ .+.-+.++..+...-... ......+.....-+
T Consensus 100 ~i~~l~~~-L~~~~~~~~~~a~~~L~nl~~-~~~~~~~~i~~~~~~~~l~~~l~~~~~~~------~~~~~~~~~~~~l~ 171 (434)
T d1q1sc_ 100 AIPAFISL-LASPHAHISEQAVWALGNIAG-DGSAFRDLVIKHGAIDPLLALLAVPDLST------LACGYLRNLTWTLS 171 (434)
T ss_dssp HHHHHHHH-TTCSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTCHHHHHHHTCSSCGGG------SCHHHHHHHHHHHH
T ss_pred chhhhhhc-cccCCHHHHHHHHHHHHHHhc-cchHHHHHHHHhhhhhHHHHHHHhccccc------chHHHHHHHHHHHH
Confidence 45555666 999999999999988876531 123333333 233333433332110000 00000000000000
Q ss_pred CCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHH
Q 000200 837 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 916 (1871)
Q Consensus 837 ~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al 916 (1871)
.-.......+..+....+-+.+..-+.+.++..|..++..+..+....+..+.--..+.++..|..-+.+.|..++..++
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al 251 (434)
T d1q1sc_ 172 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 251 (434)
T ss_dssp HHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred HHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchh
Confidence 00000112233333344445566778899999999999999888642111111101134677777778889999999999
Q ss_pred HHHHHHHHhcChhHHhh--hhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc-c------hhhhHHHHHHHhcccCCc
Q 000200 917 ITLGAVASAMGPAVEKS--SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-L------DKMVPYVTTALTDAKLGA 987 (1871)
Q Consensus 917 ~ii~~lA~amG~~~~k~--~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g-l------~~~~~~i~~~L~~~~~~p 987 (1871)
.+++.++..-. ....+ -..+++.++..|.+.+..+|..+..+|........ . ..+++.+...|.++ ++
T Consensus 252 ~~l~~l~~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~--~~ 328 (434)
T d1q1sc_ 252 RAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DF 328 (434)
T ss_dssp HHHHHHTTSCH-HHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS--CH
T ss_pred hhhhhHHhhhh-HHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc--Ch
Confidence 99999886432 23322 24577889999999999999999999987764321 1 22455666777654 57
Q ss_pred chHHHHHHHHHHHhccCCCCcch-----hhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHh
Q 000200 988 EGRKDLFDWLSKQLTGLSGFPDA-----AHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1871)
Q Consensus 988 ~~r~e~l~wL~~~l~~~~~~~~~-----~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1871)
..|.+...-|.. +....+.... ...+.+++..|++++.+++..+-.+|..++..
T Consensus 329 ~v~~~a~~~l~n-l~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~ 387 (434)
T d1q1sc_ 329 KTQKEAAWAITN-YTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 387 (434)
T ss_dssp HHHHHHHHHHHH-HHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 788888655543 3322221111 22467789999999999999999999888763
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.94 E-value=0.0041 Score=74.74 Aligned_cols=267 Identities=16% Similarity=0.187 Sum_probs=165.6
Q ss_pred HHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhh--hcchHHHHHHHHHHHhcCCCCCCCCCcccccccccc-C
Q 000200 759 LIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST-S 835 (1871)
Q Consensus 759 li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l--~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~-~ 835 (1871)
++..+... |.+.+..||..|+.+|+.|-. -++..+..+ .+.-+.++..+... . ....+..... .
T Consensus 163 ~i~~l~~l-L~s~~~~i~~~a~~~L~nia~-~~~~~r~~l~~~~~~~~L~~ll~~~--------~---~~~~~~~~~~l~ 229 (503)
T d1wa5b_ 163 AVPLFIQL-LYTGSVEVKEQAIWALGNVAG-DSTDYRDYVLQCNAMEPILGLFNSN--------K---PSLIRTATWTLS 229 (503)
T ss_dssp CHHHHHHH-HHHCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTCHHHHHHGGGSC--------C---HHHHHHHHHHHH
T ss_pred ChHHHHHH-hcCCChhHHHHHHHHHHHHhh-hhHHHHHHHHhhcccccchhhcccC--------C---HHHHHHHHHHHH
Confidence 45555666 788899999999998887542 234455544 24445555443210 0 0000000000 0
Q ss_pred CCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHH
Q 000200 836 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMAT 915 (1871)
Q Consensus 836 ~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~a 915 (1871)
.-. ...+..+..++...+-+.|+.-+.+.++..+..++..+..++......++.-.-..++..|-..+...|..+...+
T Consensus 230 nl~-~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a 308 (503)
T d1wa5b_ 230 NLC-RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPA 308 (503)
T ss_dssp HHH-CCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHh-cCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhH
Confidence 000 0012233334444556678888999999999999999988874221122211112356677777888889999999
Q ss_pred HHHHHHHHHhcChhHHhh-hhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc-------chhhhHHHHHHHhcccCCc
Q 000200 916 LITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGA 987 (1871)
Q Consensus 916 l~ii~~lA~amG~~~~k~-~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g-------l~~~~~~i~~~L~~~~~~p 987 (1871)
+.+++.++..-+...... -..+++.+...+.+.++.+|..+..++...+.... -..+++.+...|.++ ++
T Consensus 309 l~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~--~~ 386 (503)
T d1wa5b_ 309 LRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA--EY 386 (503)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS--CH
T ss_pred HHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccC--Ch
Confidence 999999986544333222 23578899999999999999999999877653211 134456677777754 46
Q ss_pred chHHHHHHHHHHHhccCCCCcc-h-----hhhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 988 EGRKDLFDWLSKQLTGLSGFPD-A-----AHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 988 ~~r~e~l~wL~~~l~~~~~~~~-~-----~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
..|.+....|..........++ . ..++.+++..|...+.++...+-++|..++.
T Consensus 387 ~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~ 446 (503)
T d1wa5b_ 387 KTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 446 (503)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 7888886555544433322222 1 2356778889999999999888888877765
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.017 Score=62.55 Aligned_cols=150 Identities=13% Similarity=0.067 Sum_probs=106.9
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHH
Q 000200 329 TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 408 (1871)
Q Consensus 329 ~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i 408 (1871)
.|.+.|.|.|-.|-..|+.+++.+.. ...+|.++..++|+-+.||..+..+|-.+... ....+.+++.+
T Consensus 23 ~L~~~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~-~~~~~~~~~~l 91 (276)
T d1oyza_ 23 ELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCEDNVFNIL 91 (276)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-cccccchHHHH
Confidence 36788999999999999999987632 45689999999999999999888887766432 11233334443
Q ss_pred H-HHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhc
Q 000200 409 K-TSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEK 487 (1871)
Q Consensus 409 ~-~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~ 487 (1871)
. ..+++.+|.||...+.+|.+.-...+. . .+.+++.+...++|.++.||.++..+++.+........+..++..
T Consensus 92 ~~~~l~d~~~~vr~~a~~aL~~~~~~~~~-~----~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~~~~~~~l~~l~~~ 166 (276)
T d1oyza_ 92 NNMALNDKSACVRATAIESTAQRCKKNPI-Y----SPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKD 166 (276)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHHHCGG-G----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTC
T ss_pred HHHHhcCCChhHHHHHHHHHHHHccccch-h----hHHHHHHHHHHhcCcchHHHHHHHHHHhhcchHHHHHHHHHhccc
Confidence 3 467899999999999999876653321 1 145688899999999999999998888765544444445555555
Q ss_pred CCHHHHH
Q 000200 488 LDDVRRN 494 (1871)
Q Consensus 488 Ld~~kk~ 494 (1871)
-++..+.
T Consensus 167 ~~~~~~~ 173 (276)
T d1oyza_ 167 PNGDVRN 173 (276)
T ss_dssp SSHHHHH
T ss_pred ccchhhh
Confidence 5544433
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.35 E-value=1.6 Score=51.45 Aligned_cols=301 Identities=12% Similarity=0.073 Sum_probs=167.3
Q ss_pred chhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhh-hhHHHHHHHHhhhc--CChhhHHHHHHHHHHHHhhcch------
Q 000200 56 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRY-AKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELEAV------ 126 (1871)
Q Consensus 56 l~kk~v~DsN~~aqek~leal~~~l~~a~~~~~~~-~~~~~~~lveK~L~--~r~~tk~~a~e~~l~~vE~e~~------ 126 (1871)
.+-+.+.|.+..++..+..++..+........... ..++++.++ ++|. ..+.++..|..++..+..-+..
T Consensus 21 ~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~-~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 99 (529)
T d1jdha_ 21 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV-RTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK 99 (529)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHH-HHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 34566788999999999998877654321111111 235667776 4564 4677888888877666543221
Q ss_pred hhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCc--cChhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchh
Q 000200 127 DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI--IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPV 204 (1871)
Q Consensus 127 ~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~~v--v~~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~l 204 (1871)
...+..|...+.+.+|+++..|+.+|.++........ +--.-.++.|-.++.+.+..+|..+...+..+-. +...-
T Consensus 100 ~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~ 177 (529)
T d1jdha_ 100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQES 177 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHHH
T ss_pred CCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhh--hhhHH
Confidence 2456788899999999999999999998876655421 1112245667778899999999998887766642 21111
Q ss_pred hHHHhh-hchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccC
Q 000200 205 KTILFE-KMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILT 283 (1871)
Q Consensus 205 k~~L~~-~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~ 283 (1871)
+..+.+ +--+....-| .. ....+ ++.....- ... -. ... +.. ..+++ ..+
T Consensus 178 ~~~~~~~~~~~~L~~ll----~~--~~~~~---~~~~~~~~--l~~-ls--~~~---~~~---------~~~~~-~g~-- 228 (529)
T d1jdha_ 178 KLIILASGGPQALVNIM----RT--YTYEK---LLWTTSRV--LKV-LS--VCS---SNK---------PAIVE-AGG-- 228 (529)
T ss_dssp HHHHHHTTHHHHHHHHH----HH--CCCHH---HHHHHHHH--HHH-HT--TST---THH---------HHHHH-TTH--
T ss_pred HHHHHhcccchHHHHHH----Hh--hhhHH---HHHHHHHH--Hhh-hh--ccc---ccc---------chhhh-hhh--
Confidence 111111 1111111111 10 00001 11000000 000 00 000 000 00000 001
Q ss_pred CCCchhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc---ccc
Q 000200 284 PLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR---THF 360 (1871)
Q Consensus 284 klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr---~~F 360 (1871)
+ ..+...+.+.....+..++..+..+....+-. .....++..|.+++.+.+..+...|+.+++.|+.+=. ..+
T Consensus 229 -~--~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~-~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i 304 (529)
T d1jdha_ 229 -M--QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 304 (529)
T ss_dssp -H--HHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred -h--hhHHHHhcccchhhhhhhhhHHHhccccccch-hhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHH
Confidence 1 12344456666777778888877775443322 2345788999999988888899999999999985422 112
Q ss_pred ccchhhhHHHHHHHhc--cCCHHHHHHHHHHHHHHH
Q 000200 361 SGSSRFLLPVLLEKLK--EKKPTVAESLTQTLQAMH 394 (1871)
Q Consensus 361 ~~y~~~~~~~lLeklK--EKK~~V~eAl~~aLda~~ 394 (1871)
.. ...++.++.-+. ..+..+.+++..+|-.+.
T Consensus 305 ~~--~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~ 338 (529)
T d1jdha_ 305 CQ--VGGIEALVRTVLRAGDREDITEPAICALRHLT 338 (529)
T ss_dssp HH--TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HH--hhhHHHHHHHHHhhhcchhHHHHHHHHhhccc
Confidence 22 234555555442 345667777666665554
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.26 E-value=0.0035 Score=60.15 Aligned_cols=89 Identities=16% Similarity=0.088 Sum_probs=71.1
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhh
Q 000200 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (1871)
Q Consensus 366 ~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~ 445 (1871)
..++++++.++|..+.||..+..+|-.+ .-...++.+...+++++|.||..++.-|.+. .. ..
T Consensus 22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~------~~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i----~~-------~~ 84 (111)
T d1te4a_ 22 EAFEPLLESLSNEDWRIRGAAAWIIGNF------QDERAVEPLIKLLEDDSGFVRSGAARSLEQI----GG-------ER 84 (111)
T ss_dssp TTHHHHHHGGGCSCHHHHHHHHHHHGGG------CSHHHHHHHHHHHHHCCTHHHHHHHHHHHHH----CS-------HH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhc------chhhhHHHHHhhhccchhHHHHHHHHHHHHh----Cc-------cc
Confidence 3578899999999999998877766422 3346778899999999999999988877643 11 23
Q ss_pred hHHHHHhhhCCCCHHHHHHHHHHHHH
Q 000200 446 YVPICMECLNDGTPEVRDAAFSVLAA 471 (1871)
Q Consensus 446 ~~~~l~k~l~Ds~~~VR~aA~~~l~~ 471 (1871)
..+.+.++++|.++.||.+|..+|.+
T Consensus 85 ~~~~L~~ll~d~~~~vr~~A~~aL~t 110 (111)
T d1te4a_ 85 VRAAMEKLAETGTGFARKVAVNYLET 110 (111)
T ss_dssp HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 46888899999999999999998753
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.17 E-value=0.006 Score=58.45 Aligned_cols=86 Identities=19% Similarity=0.198 Sum_probs=70.2
Q ss_pred hhHHHHhhCCChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCcccCccchHHHHH
Q 000200 1258 LPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVA 1337 (1871)
Q Consensus 1258 lP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v~~~~Kal~~ia 1337 (1871)
+|.|+.-+.|+...||... +..+..+ ...+..++|++.|+++|+.+|.+++.-||.+ ++..+++.+.
T Consensus 24 ~~~L~~~l~d~~~~vR~~a---~~~L~~~-~~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i---------~~~~~~~~L~ 90 (111)
T d1te4a_ 24 FEPLLESLSNEDWRIRGAA---AWIIGNF-QDERAVEPLIKLLEDDSGFVRSGAARSLEQI---------GGERVRAAME 90 (111)
T ss_dssp HHHHHHGGGCSCHHHHHHH---HHHHGGG-CSHHHHHHHHHHHHHCCTHHHHHHHHHHHHH---------CSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHH---HHHHHhc-chhhhHHHHHhhhccchhHHHHHHHHHHHHh---------CccchHHHHH
Confidence 5778888888888888653 3344433 4567889999999999999999999999975 4457889999
Q ss_pred HHhccCChhHHHHHHHHHH
Q 000200 1338 SLTAERDGEIRKAALNTLA 1356 (1871)
Q Consensus 1338 ~~i~drD~~VR~AALn~l~ 1356 (1871)
.++.|.|+.||.+|+.+|.
T Consensus 91 ~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 91 KLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHTTSCCTHHHHHHHHHGG
T ss_pred HHHcCCCHHHHHHHHHHHH
Confidence 9999999999999999874
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.51 E-value=0.0073 Score=66.72 Aligned_cols=173 Identities=13% Similarity=0.136 Sum_probs=116.7
Q ss_pred CCCChHHHHHHHHHHHHHHHH---cccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhh
Q 000200 863 ESPDWKVRLESIEAVNKILEE---ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGV 937 (1871)
Q Consensus 863 ~d~~WK~RkEaLe~v~~il~~---ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l 937 (1871)
...++.+|..|++.+..+++. ++..++- |-+..-|..-+.+.|..+...|+.+|+.++.... .+... ....
T Consensus 27 ~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~---gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~-~~~~~~~~~~~ 102 (264)
T d1xqra1 27 QAADQQEREGALELLADLCENMDNAADFCQL---SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA-AIQEQVLGLGA 102 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHT---THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTH
T ss_pred cCCCHHHHHHHHHHHHHHHcCHHHHHHHHHc---CCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCc
Confidence 345789999999999999953 3223332 4455556666788999999999999999996432 23222 3468
Q ss_pred hHHHHHHhc-cCchhHHHHHHHHHHHHHHhcc--chh-----hhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCc-
Q 000200 938 LSDILKCLG-DNKKHMRECTLTVLDAWLAAVH--LDK-----MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP- 1008 (1871)
Q Consensus 938 ~~~il~~l~-D~K~~vR~aa~~alda~~~~~g--l~~-----~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~- 1008 (1871)
+|.++..|. |.-..+|..+..||........ ... .++.+...|.++ ++..+...+.-|..-+...+...
T Consensus 103 i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~ 180 (264)
T d1xqra1 103 LRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPEHKG 180 (264)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC--chHHHHHHHHHHHHHHhccHHHHH
Confidence 999999995 6778899999999988775432 222 245667777754 56666666544433222222111
Q ss_pred ch--hhhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 1009 DA--AHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 1009 ~~--~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
.. ...+..++.-|.+.+++||..|-.+|..+..
T Consensus 181 ~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~ 215 (264)
T d1xqra1 181 TLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 215 (264)
T ss_dssp HHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 11 2235557778899999999999999887764
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.48 E-value=5.2 Score=50.21 Aligned_cols=179 Identities=12% Similarity=0.142 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHcccCCCCCCccchHHHHhhhc-----cchhHhHHHHHHHHHHHHHHhcChh-HHhhhhhhhHHHHHHh
Q 000200 872 ESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-----YDSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILKCL 945 (1871)
Q Consensus 872 EaLe~v~~il~~ankrI~p~~~geL~~aLk~rl-----~DsNk~lv~~al~ii~~lA~amG~~-~~k~~k~l~~~il~~l 945 (1871)
..++.+..++......+.|.. ..++..|...+ .++|...+...+.+++.+....|+. +..+...++|.+...+
T Consensus 572 ~ll~~l~~ii~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~ 650 (959)
T d1wa5c_ 572 FLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVF 650 (959)
T ss_dssp HHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 367788888877667788764 77777776554 3456778888999999999999875 5677888999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHhcc-c-hhhhHHHHHHHhcc-cCCcchHHHHHHHHHHHhccCCC-CcchhhhhhHHhhhc
Q 000200 946 GDNKKHMRECTLTVLDAWLAAVH-L-DKMVPYVTTALTDA-KLGAEGRKDLFDWLSKQLTGLSG-FPDAAHLLKPASIAM 1021 (1871)
Q Consensus 946 ~D~K~~vR~aa~~alda~~~~~g-l-~~~~~~i~~~L~~~-~~~p~~r~e~l~wL~~~l~~~~~-~~~~~~~~~p~~~~L 1021 (1871)
........+.+...+..+...++ + ..+.+.+...+... .....--.+++..+...+...+. .......+..+..++
T Consensus 651 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l 730 (959)
T d1wa5c_ 651 SEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLI 730 (959)
T ss_dssp HTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHhCHHhhcchHHHHHHHHHHH
Confidence 88888888888888888887664 2 22222222222100 00111233444444333322211 122334455555566
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Q 000200 1022 TDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (1871)
Q Consensus 1022 ~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~ 1053 (1871)
.+..- +..|..+++.++..++.+.+...+.
T Consensus 731 ~~~~~--~~~~~~ll~~ii~~~~~~~~~~~l~ 760 (959)
T d1wa5c_ 731 ASKAY--EVHGFDLLEHIMLLIDMNRLRPYIK 760 (959)
T ss_dssp TCTTT--HHHHHHHHHHHHHHSCHHHHGGGHH
T ss_pred CCCcc--hHHHHHHHHHHHHHCchhhhHhHHH
Confidence 65443 4678889999999998776655443
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.11 E-value=0.13 Score=51.85 Aligned_cols=98 Identities=16% Similarity=0.252 Sum_probs=76.7
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000200 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1871)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1871)
.+...||. +.-+|=.++ | -+|.+.-|.+++|++||...|.+++..||.++..+..=.|+.|... .+-|+
T Consensus 20 ~l~~~dw~----~ileicD~I---~--~~~~~~k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl 90 (145)
T d1ujka_ 20 LNKELDWA----SINGFCEQL---N--EDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFL 90 (145)
T ss_dssp TCSSCCHH----HHHHHHHHH---T--SSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHH
T ss_pred CCCCcCHH----HHHHHHHHH---h--CCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHH
Confidence 35678994 333333333 2 2344446899999999999999999999999999999999999765 66788
Q ss_pred HHHHHHhccC------chhHHHHHHHHHHHHHHhc
Q 000200 939 SDILKCLGDN------KKHMRECTLTVLDAWLAAV 967 (1871)
Q Consensus 939 ~~il~~l~D~------K~~vR~aa~~alda~~~~~ 967 (1871)
..+...+.++ ...|++-+++.+..|....
T Consensus 91 ~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~f 125 (145)
T d1ujka_ 91 NELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 125 (145)
T ss_dssp HHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHC
Confidence 8888888653 3479999999999998876
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.98 E-value=3 Score=46.31 Aligned_cols=148 Identities=17% Similarity=0.119 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhcccccc------chhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 000200 324 TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSG------SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 324 ~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~------y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~ 396 (1871)
.+.++.|...+. ..+..+...+...+..++..-...+.. .....+|.+++-+++....|+.++..+|..+...
T Consensus 282 ~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~ 361 (457)
T d1xm9a1 282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred hcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC
Confidence 355666666665 556666666666666665433321111 1235689999999999999999999999888754
Q ss_pred cCCChh----hhHHHHHHHhhc------CCchhHHHHHHHHHHHHhhCChhHHHHhhh-hhHHHHHhhhC-CCCHHHHHH
Q 000200 397 GCLNLV----DVVEDVKTSVKN------KVPLVRSLTLNWVTFCIETSSKAAVLKVHK-DYVPICMECLN-DGTPEVRDA 464 (1871)
Q Consensus 397 ~~~~l~----~~~e~i~~al~~------KnP~vk~etl~~L~r~l~~~~~~~~~~~~k-~~~~~l~k~l~-Ds~~~VR~a 464 (1871)
...-. ..++.+...+.+ ..+.++..++..|.......+.. ...+.. ..++.++..+. +.++.|+++
T Consensus 362 -~~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~l~~~g~i~~L~~l~~~~~~~~~~~a 439 (457)
T d1xm9a1 362 -PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQL-AKQYFSSSMLNNIINLCRSSASPKAAEA 439 (457)
T ss_dssp -GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHH-HHHHCCHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -hhHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHH-HHHHHHCCCHHHHHHHHhCCCCHHHHHH
Confidence 11111 123445555542 23468888888888776544321 112222 36788888875 567899999
Q ss_pred HHHHHHHHH
Q 000200 465 AFSVLAAIA 473 (1871)
Q Consensus 465 A~~~l~~lm 473 (1871)
|+.+|.+|.
T Consensus 440 A~~~L~~L~ 448 (457)
T d1xm9a1 440 ARLLLSDMW 448 (457)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHHH
Confidence 999998874
|
| >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.61 E-value=0.15 Score=51.48 Aligned_cols=101 Identities=18% Similarity=0.308 Sum_probs=77.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1871)
+...||..= -+|++-.| -++.+--|.+++|++||.+.|.+++..||.++..+..=.|+.|... .+-++.
T Consensus 18 ~~~~dw~~i-------l~icD~I~--~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~ 88 (145)
T d1dvpa1 18 RLEPDWPSI-------LLICDEIN--QKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCE 88 (145)
T ss_dssp CSSCCHHHH-------HHHHHHHH--TTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHH
T ss_pred CCCCCHHHH-------HHHHHHHh--CCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHH
Confidence 566788643 33333222 1344447899999999999999999999999999999999999865 556777
Q ss_pred HHHHHhccC-chhHHHHHHHHHHHHHHhccchh
Q 000200 940 DILKCLGDN-KKHMRECTLTVLDAWLAAVHLDK 971 (1871)
Q Consensus 940 ~il~~l~D~-K~~vR~aa~~alda~~~~~gl~~ 971 (1871)
.+...+..+ -..|++-+++.+..|....+-++
T Consensus 89 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 121 (145)
T d1dvpa1 89 MFSSFLESTPHENVRQKMLELVQTWAYAFRSSD 121 (145)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 776666443 45799999999999999876443
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.76 E-value=0.62 Score=46.64 Aligned_cols=112 Identities=15% Similarity=0.244 Sum_probs=81.8
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000200 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1871)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1871)
.+...||.. .-++=.+|+. ++.+.-|.+++|++||...|.+++..||.++..+..=.|+.|... .+-|+
T Consensus 13 ~~~~~dw~~----il~icD~I~~-----~~~~~k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl 83 (143)
T d1mhqa_ 13 SMSEQDWSA----IQNFCEQVNT-----DPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFL 83 (143)
T ss_dssp TCSSCCHHH----HHHHHHHHHH-----SSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCCCcCHHH----HHHHHHHHHc-----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHH
Confidence 356789953 3334344432 233336899999999999999999999999999999999999765 55688
Q ss_pred HHHHHHhccC------chhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000200 939 SDILKCLGDN------KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1871)
Q Consensus 939 ~~il~~l~D~------K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1871)
..+...+.++ -..|++-+++.+..|.....-++-+.++-..|+
T Consensus 84 ~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f~~~~~~~~~y~~Lk 132 (143)
T d1mhqa_ 84 NELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDIKIRDAYQMLK 132 (143)
T ss_dssp HHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 8888777653 346999999999999887753333333333343
|
| >d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.59 E-value=0.49 Score=47.86 Aligned_cols=99 Identities=14% Similarity=0.254 Sum_probs=77.2
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000200 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1871)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1871)
.+.+.||-.=.| +=.+|+. ++.+.-|.+++|++||...|.+++..||.++..+..=.|+.|... .+-|+
T Consensus 14 ~l~~~dw~~ile----icD~In~-----~~~~~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl 84 (151)
T d1juqa_ 14 SNRQEDWEYIIG----FCDQINK-----ELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFL 84 (151)
T ss_dssp TCSSCCHHHHHH----HHHHHHH-----STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHH
T ss_pred CCCCcCHHHHHH----HHHHHhc-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHH
Confidence 356789954433 3333332 233346899999999999999999999999999999999999876 56788
Q ss_pred HHHHHHhccC------chhHHHHHHHHHHHHHHhcc
Q 000200 939 SDILKCLGDN------KKHMRECTLTVLDAWLAAVH 968 (1871)
Q Consensus 939 ~~il~~l~D~------K~~vR~aa~~alda~~~~~g 968 (1871)
..+...+.++ ...|++-+++.+..|.....
T Consensus 85 ~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f~ 120 (151)
T d1juqa_ 85 NELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALP 120 (151)
T ss_dssp HHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHcc
Confidence 8888877653 34699999999999988764
|
| >d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Tom1 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.05 E-value=0.58 Score=47.37 Aligned_cols=111 Identities=21% Similarity=0.343 Sum_probs=77.7
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc-chhHhHHHHHHHHHHHHHHhcChhHHhh--hhhh
Q 000200 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS--SKGV 937 (1871)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~-DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l 937 (1871)
.+...||..=.|=-| .|+. ++.+.-|.+++|++||. ..|.+++..||.++..+..=.|+.|... .+-|
T Consensus 24 ~l~~~dw~~il~icD----~In~-----~~~~~k~a~ral~krL~~~~n~~v~l~aL~LLe~~vkNCG~~fh~evas~~F 94 (153)
T d1elka_ 24 SLQSEDWALNMEICD----IINE-----TEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDF 94 (153)
T ss_dssp TCSSCCHHHHHHHHH----HHHH-----SSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHH
T ss_pred CCCcccHHHHHHHHH----HHhC-----CCcCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHH
Confidence 356789976333222 3321 23334789999999995 5699999999999999999999999764 5567
Q ss_pred hHHHHH-Hhcc---CchhHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 000200 938 LSDILK-CLGD---NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1871)
Q Consensus 938 ~~~il~-~l~D---~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1871)
+-.++. .+.. ....|++-+++.+..|.....-++=++.|.+..
T Consensus 95 l~~ll~~~~~~~~~~~~~Vk~kil~li~~W~~~f~~~p~~~~i~~~y 141 (153)
T d1elka_ 95 VESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPDLTGVVTIY 141 (153)
T ss_dssp HHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHhcCCccchHHHHHH
Confidence 776543 2222 223599999999999998875444455554444
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.04 E-value=48 Score=40.80 Aligned_cols=181 Identities=12% Similarity=0.094 Sum_probs=107.2
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHcc-----------cCCCCCCccchHHHHhhhccchh-----HhHHHHHHHHHHH
Q 000200 858 LVKSLESPDWKVRLESIEAVNKILEEAN-----------KRIQPAGTGELFGGLRGRLYDSN-----KNLVMATLITLGA 921 (1871)
Q Consensus 858 l~~~l~d~~WK~RkEaLe~v~~il~~an-----------krI~p~~~geL~~aLk~rl~DsN-----k~lv~~al~ii~~ 921 (1871)
++.-+.|.+=.+|..|..++..+++... ..+.|.. .+++..|-..+.+.+ ..+....+++++.
T Consensus 501 l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l-~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ 579 (959)
T d1wa5c_ 501 LATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST-EILLKNLIALILKHGSSPEKLAENEFLMRSIFR 579 (959)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH-HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHH
T ss_pred HHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhH-HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHH
Confidence 4445556666677788888887774211 1234443 555666655554333 3333457888999
Q ss_pred HHHhcChhHHhhhhhhhHHHHHHhc---c--CchhHHHHHHHHHHHHHHhccchh-------hhHHHHHHHhcccCCcch
Q 000200 922 VASAMGPAVEKSSKGVLSDILKCLG---D--NKKHMRECTLTVLDAWLAAVHLDK-------MVPYVTTALTDAKLGAEG 989 (1871)
Q Consensus 922 lA~amG~~~~k~~k~l~~~il~~l~---D--~K~~vR~aa~~alda~~~~~gl~~-------~~~~i~~~L~~~~~~p~~ 989 (1871)
+..-+|..+.+|...+++.+...+. + .+...+..+.+++.......|-+. ++|.+...+.+. ....
T Consensus 580 ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~--~~~~ 657 (959)
T d1wa5c_ 580 VLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED--IQEF 657 (959)
T ss_dssp HHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT--CTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhcc--chhH
Confidence 9999999999998887777766542 2 356788899999999887765333 233444444432 2445
Q ss_pred HHHHHHHHHHHhccCCC-CcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 990 RKDLFDWLSKQLTGLSG-FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 990 r~e~l~wL~~~l~~~~~-~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
..+++..+.-.+...+. .+....++.+++.-..+...+.......++..++.
T Consensus 658 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 710 (959)
T d1wa5c_ 658 IPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIK 710 (959)
T ss_dssp HHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHH
Confidence 66666666555544443 34556666676643332333334444445544443
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=85.19 E-value=0.64 Score=50.28 Aligned_cols=114 Identities=16% Similarity=0.126 Sum_probs=69.9
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhh
Q 000200 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1871)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~ 936 (1871)
.|..-+.|++|.+|..+.+.+ | ...|..-++|.+..|-..++ ..+|
T Consensus 118 ~L~~Ll~D~d~~VR~~aa~~~------------~------~~~L~~L~~D~d~~VR~~aA-------~~~~--------- 163 (233)
T d1lrva_ 118 QLEQMAADRDYLVRAYVVQRI------------P------PGRLFRFMRDEDRQVRKLVA-------KRLP--------- 163 (233)
T ss_dssp GGGGGTTCSSHHHHHHHHHHS------------C------GGGGGGTTTCSCHHHHHHHH-------HHSC---------
T ss_pred HHHHHhcCCCHHHHHHHHhcc------------c------hhHHHHHhcCCCHHHHHHHH-------HhcC---------
Confidence 344557899999998887531 1 12334445777776655443 3344
Q ss_pred hhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhH
Q 000200 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (1871)
Q Consensus 937 l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p 1016 (1871)
.+.++..+.|.-+.||.++...|. - +.+...+.++ ++.+|..+.. ++ -..
T Consensus 164 -~~~L~~l~~D~d~~VR~~aa~~L~-------~----~~L~~l~~D~--d~~VR~aaae----~~------------~~~ 213 (233)
T d1lrva_ 164 -EESLGLMTQDPEPEVRRIVASRLR-------G----DDLLELLHDP--DWTVRLAAVE----HA------------SLE 213 (233)
T ss_dssp -GGGGGGSTTCSSHHHHHHHHHHCC-------G----GGGGGGGGCS--SHHHHHHHHH----HS------------CHH
T ss_pred -HHHHHHHccCCCHHHHHHHHHhcC-------c----HHHHHHHhCC--CHHHHHHHHH----hc------------cHH
Confidence 244567788999999988876542 1 2223333444 5677776642 21 123
Q ss_pred HhhhcCCCCHHHHHHHHH
Q 000200 1017 ASIAMTDKSSDVRKAAEA 1034 (1871)
Q Consensus 1017 ~~~~L~Dr~~dVRkaA~~ 1034 (1871)
++..|.|.+++||.+|.+
T Consensus 214 ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 214 ALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp HHHHCCCCCHHHHHHHHC
T ss_pred HHHHhCCCCHHHHHHHHH
Confidence 566788999999998753
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.78 E-value=2.1 Score=42.74 Aligned_cols=97 Identities=13% Similarity=0.125 Sum_probs=72.4
Q ss_pred hhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHH
Q 000200 293 GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (1871)
Q Consensus 293 ~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~ 370 (1871)
.+.+.+|.- .-++-.+++ -.+..=.+.+++|+++|...|.+++..|+..++.+.+-=|+.|... .+-++..
T Consensus 20 ~l~~~dw~~----ileicD~I~---~~~~~~k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~ 92 (145)
T d1ujka_ 20 LNKELDWAS----INGFCEQLN---EDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNE 92 (145)
T ss_dssp TCSSCCHHH----HHHHHHHHT---SSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHH
T ss_pred CCCCcCHHH----HHHHHHHHh---CCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHH
Confidence 356678843 222222222 2233346899999999999999999999999999999999999766 5667777
Q ss_pred HHHHhccC------CHHHHHHHHHHHHHHHHh
Q 000200 371 LLEKLKEK------KPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 371 lLeklKEK------K~~V~eAl~~aLda~~~~ 396 (1871)
|...++.| ...|++-+.+.+..|...
T Consensus 93 L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~ 124 (145)
T d1ujka_ 93 LIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 124 (145)
T ss_dssp HHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCCCCcHHHHHHHHHHHHHHHHH
Confidence 77777653 347889999999999875
|
| >d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.66 E-value=2.2 Score=42.78 Aligned_cols=97 Identities=13% Similarity=0.128 Sum_probs=73.5
Q ss_pred hhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHH
Q 000200 293 GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (1871)
Q Consensus 293 ~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~ 370 (1871)
.+.+.+|.-=.|.-|.+. +.+ .+--+.+++|+++|...|.+++..|+..++.+.+--|+.|... .+-++..
T Consensus 14 ~l~~~dw~~ileicD~In---~~~----~~~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~ 86 (151)
T d1juqa_ 14 SNRQEDWEYIIGFCDQIN---KEL----EGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNE 86 (151)
T ss_dssp TCSSCCHHHHHHHHHHHH---HST----THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHh---cCC----ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHH
Confidence 356778855444333332 222 2246899999999999999999999999999999999999877 4557777
Q ss_pred HHHHhccC------CHHHHHHHHHHHHHHHHh
Q 000200 371 LLEKLKEK------KPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 371 lLeklKEK------K~~V~eAl~~aLda~~~~ 396 (1871)
|..-++.+ ...|.+-+.+.+..|...
T Consensus 87 l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~ 118 (151)
T d1juqa_ 87 LIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 118 (151)
T ss_dssp HHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcccCCCCcccHHHHHHHHHHHHHHHHH
Confidence 77766654 346889999999999875
|
| >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=82.61 E-value=2.4 Score=42.14 Aligned_cols=96 Identities=9% Similarity=0.082 Sum_probs=69.8
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~l 371 (1871)
+.+.+|.-=.|.-|.+. -.+..=.+.+++|+++|.+.|.+++..|+..++.+.+-=|..|... .+-++..|
T Consensus 18 ~~~~dw~~il~icD~I~-------~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l 90 (145)
T d1dvpa1 18 RLEPDWPSILLICDEIN-------QKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMF 90 (145)
T ss_dssp CSSCCHHHHHHHHHHHH-------TTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh-------CCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHH
Confidence 45667754444333332 1233457899999999999999999999999999999999999866 34455555
Q ss_pred HHHhccC-CHHHHHHHHHHHHHHHHh
Q 000200 372 LEKLKEK-KPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 372 LeklKEK-K~~V~eAl~~aLda~~~~ 396 (1871)
..-++.. -..|++-+.+.+..|...
T Consensus 91 ~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (145)
T d1dvpa1 91 SSFLESTPHENVRQKMLELVQTWAYA 116 (145)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 4444333 447899999999999875
|