Citrus Sinensis ID: 000202
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1866 | 2.2.26 [Sep-21-2011] | |||||||
| O82500 | 1095 | Putative disease resistan | yes | no | 0.289 | 0.494 | 0.362 | 8e-96 | |
| Q40392 | 1144 | TMV resistance protein N | N/A | no | 0.248 | 0.404 | 0.374 | 4e-86 | |
| Q9T048 | 985 | Disease resistance protei | no | no | 0.404 | 0.766 | 0.293 | 2e-82 | |
| O23530 | 1301 | Protein SUPPRESSOR OF npr | no | no | 0.264 | 0.379 | 0.354 | 2e-75 | |
| O81825 | 919 | Probable disease resistan | no | no | 0.398 | 0.808 | 0.275 | 8e-71 | |
| Q42484 | 909 | Disease resistance protei | no | no | 0.243 | 0.499 | 0.327 | 3e-64 | |
| Q8L3R3 | 885 | Disease resistance protei | no | no | 0.229 | 0.484 | 0.320 | 6e-60 | |
| O64973 | 889 | Disease resistance protei | no | no | 0.363 | 0.763 | 0.270 | 9e-60 | |
| P60838 | 894 | Probable disease resistan | no | no | 0.231 | 0.483 | 0.315 | 2e-59 | |
| Q9FG91 | 848 | Probable disease resistan | no | no | 0.280 | 0.616 | 0.314 | 2e-58 |
| >sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1 | Back alignment and function desciption |
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Score = 353 bits (906), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 232/640 (36%), Positives = 337/640 (52%), Gaps = 99/640 (15%)
Query: 1 MASSSSSPPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPE 60
MASSSS+ R YDVF SFRGED R+NF SHL + TF D+ +KR I
Sbjct: 1 MASSSSNSWR-----YDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGH 55
Query: 61 SLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQI 120
L I S IS+++FSE YASS WCLDEL++I++CK G V+PVFY+VDPS +RKQ
Sbjct: 56 ELRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQT 115
Query: 121 GSFGDSFF-----MLEERFPYKMRNWRSALTEAADLSGFDSCVIRPESRLVADIANEVLE 175
G FG SF EER NWR ALT+AA++ G E+ + I+ +VLE
Sbjct: 116 GKFGMSFLETCCGKTEER----QHNWRRALTDAANILGDHPQNWDNEAYKITTISKDVLE 171
Query: 176 RLDDTFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235
+L+ T + DL+G+E I ++ESLL S GV +GIWG G+GKTTIA A++N+
Sbjct: 172 KLNATPSRDFNDLVGMEAHIAKMESLLCLESQGVRIVGIWGPAGVGKTTIARALYNQYHE 231
Query: 236 HFEGSYFACNVRAAEETGRLDD------LRKELLSKLLNDRNVKNFQNISVNFQSKRLAR 289
+F S F NVR + LDD L++ LSKLL+ ++++ ++ +RL
Sbjct: 232 NFNLSIFMENVRESYGEAGLDDYGLKLHLQQRFLSKLLDQKDLRVRHLGAI---EERLKS 288
Query: 290 KKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHAD 349
+KVLI+ DDV++ Q++ L F + S++++TT++KQ+L + +++H+YQ+ +
Sbjct: 289 QKVLIILDDVDNIEQLKALAKENQWFGNKSRIVVTTQNKQLLVSHDINHMYQVAYPSKQE 348
Query: 350 AHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLE 409
A +F Q AF+ LA + A +PLAL+VLG ++ G+ KEEWE ++ L+
Sbjct: 349 ALTIFCQHAFKQSSPSDDLKHLAIEFTTLAGHLPLALRVLGSFMRGKGKEEWEFSLPTLK 408
Query: 410 IVPHMEIQEVLKISYDSLDDSQK------------------------------------- 432
E+++VLK+ YD L D +K
Sbjct: 409 SRLDGEVEKVLKVGYDGLHDHEKDLFLHIACIFSGQHENYLKQMIIANNDTYVSFGLQVL 468
Query: 433 --------------RMHDLLRAMGREIVRKESIVDPGKRSRLWHDEDIYEVLKKNTGTEA 478
MH LLR +G+E+VRK+SI +PGKR L + ++ VL NTGT
Sbjct: 469 ADKSLIQKFENGRIEMHSLLRQLGKEVVRKQSIYEPGKRQFLMNAKETCGVLSNNTGTGT 528
Query: 479 IKDISLNMSDNEKEIF--ARTFSTMTNLGHLKAYESREIKDVMS--------DLEVVP-- 526
+ ISL+M + ++E++ +TF M NL +LK Y S I D M L +P
Sbjct: 529 VLGISLDMCEIKEELYISEKTFEEMRNLVYLKFYMSSPIDDKMKVKLQLPEEGLSYLPQL 588
Query: 527 ------------FPEVY-AKNLVSLKMWDGKVKERWDDVQ 553
FP + + LV L M K+K+ W VQ
Sbjct: 589 RLLHWDAYPLEFFPSSFRPECLVELNMSHSKLKKLWSGVQ 628
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1 | Back alignment and function description |
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Score = 321 bits (822), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 197/526 (37%), Positives = 295/526 (56%), Gaps = 63/526 (11%)
Query: 16 YDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDND-LKRGDEIPESLLGTIEASTISII 74
YDVFLSFRGEDTR FTSHLY L ++TF D+ L+ G IP L IE S +I+
Sbjct: 12 YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71
Query: 75 IFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQIGSFGDSFFMLEERF 134
+FSE YA+S+WCL+EL+KI+ECK + Q VIP+FY VDPSHVR Q SF +F E ++
Sbjct: 72 VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131
Query: 135 P---YKMRNWRSALTEAADLSGFDSCVIRPESRLVADIANEVLERLDDTFQSESKDLIGV 191
++ WR AL EAA+L G + ++ + I +++ +L S ++++G+
Sbjct: 132 KDDVEGIQRWRIALNEAANLKGSCDNRDKTDADCIRQIVDQISSKLCKISLSYLQNIVGI 191
Query: 192 EWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSY---FACNVRA 248
+ +++IESLL G GV +GIWG+GG+GKTTIA A+F+ + + SY AC ++
Sbjct: 192 DTHLEKIESLLEIGINGVRIMGIWGMGGVGKTTIARAIFDTLLGRMDSSYQFDGACFLKD 251
Query: 249 AEETGR-LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDV-NHPRQIE 306
+E R + L+ LLS+LL ++ N + + + RL KKVLIV DD+ N +E
Sbjct: 252 IKENKRGMHSLQNALLSELLREKANYNNEEDGKHQMASRLRSKKVLIVLDDIDNKDHYLE 311
Query: 307 LLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDA 366
L G LD F +GS++IITTRDK ++ ++ IY++ L ++ +LF Q AF + +
Sbjct: 312 YLAGDLDWFGNGSRIIITTRDKHLIEKNDI--IYEVTALPDHESIQLFKQHAFGKEVPNE 369
Query: 367 GYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIVPHMEIQEVLKISYDS 426
+ +L+ + + YA+G+PLALKV G L EW+SA+ ++ + I + LKISYD
Sbjct: 370 NFEKLSLEVVNYAKGLPLALKVWGSLLHNLRLTEWKSAIEHMKNNSYSGIIDKLKISYDG 429
Query: 427 LDDSQK--------------------------------------------------RMHD 436
L+ Q+ +MHD
Sbjct: 430 LEPKQQEMFLDIACFLRGEEKDYILQILESCHIGAEYGLRILIDKSLVFISEYNQVQMHD 489
Query: 437 LLRAMGREIVRKESIVDPGKRSRLWHDEDIYEVLKKNTGTEAIKDI 482
L++ MG+ IV + DPG+RSRLW +++ EV+ NTGT A++ I
Sbjct: 490 LIQDMGKYIVNFQK--DPGERSRLWLAKEVEEVMSNNTGTMAMEAI 533
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Nicotiana glutinosa (taxid: 35889) |
| >sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1 | Back alignment and function description |
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Score = 308 bits (790), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 258/879 (29%), Positives = 429/879 (48%), Gaps = 124/879 (14%)
Query: 999 ASKIGVYGVGGIGKTAALKAL---ISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055
A KIGV+G+GG+GKT ++ L + F ++I+V VS+ ++ R++QKQ+ +L
Sbjct: 164 AQKIGVWGMGGVGKTTLVRTLNNKLREEGATQPFGLVIFVIVSKEFDPREVQKQIAERLD 223
Query: 1056 LHCKDRETDAQVAEKLWQVLNGE-KFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASR 1114
+ + E++ ++A +++ L E KFLL+LDDVW+ IDL+ +GIP GSK+ + SR
Sbjct: 224 IDTQMEESEEKLARRIYVGLMKERKFLLILDDVWKPIDLDLLGIPRTEENKGSKVILTSR 283
Query: 1115 ELDVCRNMDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTI 1174
L+VCR+M ++ V+++ L +DAWELFCK G +++S + A+A+ + C GLPL I
Sbjct: 284 FLEVCRSMKTDLDVRVDCLLEEDAWELFCKNAGDVVRSDHVRKIAKAVSQECGGLPLAII 343
Query: 1175 VTAKALAGERNVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCS 1234
A+ G++NV +W H K S + + E + + LK S+D L+D K CFL C+
Sbjct: 344 TVGTAMRGKKNVKLWNHVLSKLSKSVPWIKSIEEKIFQPLKLSYDFLEDK-AKFCFLLCA 402
Query: 1235 LFPEDREVSIVEFIDYCIQEGII--VGTLANAHKRGHQIVDVLVDASLLLINEVHNSIRM 1292
LFPED + + E + Y + EG + +G+ ++ G V+ L D LL + ++++M
Sbjct: 403 LFPEDYSIEVTEVVRYWMAEGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDTVKM 462
Query: 1293 PGLMKDLAFGILSSSTGDRCFLSTAEGFQFLSRAYSRLAELPNAGTSSLRSPERSRLFIP 1352
+++D A I+SSS D ++S L +GT
Sbjct: 463 HDVVRDFAIWIMSSSQDD---------------SHS----LVMSGT-------------- 489
Query: 1353 EAYQFLLGARAGLTEPPSEEEWTHAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRL 1410
GL + ++ + + M+N L++LP C L LQ N L
Sbjct: 490 -----------GLQDIRQDKLAPSLRRVSLMNNKLESLPDLVEEFCVKTSVLLLQGNFLL 538
Query: 1411 RVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILILRDCDFLFVLPPEVGSLE 1469
+ +P F + +L++LNLS TRIKS P +L+ L L L LRDC F V P + +L
Sbjct: 539 KEVPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSLFLRDC-FKLVKLPSLETLA 597
Query: 1470 CLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQAL 1529
LE+LDL GT I P+ + +L R+L + S + L + I + ++SRL +L
Sbjct: 598 KLELLDLCGTHILEFPRGLEELKRFRHLDL--------SRTLHL--ESIPARVVSRLSSL 647
Query: 1530 ETLSIDVHPGDKRWD-----KDVKIVITEVSGLTKLSSLSFHFPEIECVAEFL--KGSAW 1582
ETL D+ RW + + + E+ L +L LS + FL K + W
Sbjct: 648 ETL--DMTSSHYRWSVQGETQKGQATVEEIGCLQRLQVLSIRLHS----SPFLLNKRNTW 701
Query: 1583 NNQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQ-ILIHSTA 1641
++L +F+ VVG + Y+ +HD+ ++ NV I +L ++T+
Sbjct: 702 -IKRLKKFQLVVG----------SRYIL--RTRHDKRRLTISHLNVSQVSIGWLLAYTTS 748
Query: 1642 FYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVV------------DTKEHTTAV- 1688
++H I ++ V G K + L I+ V+ +T + ++ +
Sbjct: 749 LALNHCQGIEAMMKKLVSDNKGFKNL---KSLTIENVIINTNSWVEMVSTNTSKQSSDIL 805
Query: 1689 --FPSLENLTLNHLWDLTCIWQGILPEG-SFAELRILSIHACRHLEYVFTCSMIQFLAKL 1745
P+LE L L + DL + G L+I+ I CR L + + L
Sbjct: 806 DLLPNLEELHLRRV-DLETFSELQTHLGLKLETLKIIEITMCRKLRTLLDKRNFLTIPNL 864
Query: 1746 EELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANI--WRNDWPSLEYISF 1803
EE+ + YC +++++ E +P+L+ L+L +LP L +I W W LE +
Sbjct: 865 EEIEISYCDSLQNL---HEALLYHQPFVPNLRVLKLRNLPNLVSICNWGEVWECLEQVEV 921
Query: 1804 YGCPKLKKMGMDS---KLKETLIWIKAEKKWWAELEWED 1839
C +L + + S ++K+ IK E WW LEW+D
Sbjct: 922 IHCNQLNCLPISSTCGRIKK----IKGELSWWERLEWDD 956
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Disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 200/564 (35%), Positives = 298/564 (52%), Gaps = 70/564 (12%)
Query: 1 MASSSSSPPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPE 60
+ASSS S + YDVF SFRGED RD+F SHL L + TFID++++R I
Sbjct: 3 IASSSGS------RRYDVFPSFRGEDVRDSFLSHLLKEL-RGKAITFIDDEIERSRSIGP 55
Query: 61 SLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQI 120
LL I+ S I+I+IFS+ YASS WCL+EL++I +C N Q+VIP+F+ VD S V+KQ
Sbjct: 56 ELLSAIKESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQT 115
Query: 121 GSFGDSFFMLEERFPYK----MRNWRSALTEAADLSGFDSCVIRPESRLVADIANEVLER 176
G FG F EE K ++W+ AL A ++G+D E+ ++ ++A +VL R
Sbjct: 116 GEFGKVF---EETCKAKSEDEKQSWKQALAAVAVMAGYDLRKWPSEAAMIEELAEDVL-R 171
Query: 177 LDDTFQSESKDLIGVEWRIKEIESLLRTGSAGV-YKLGIWGIGGIGKTTIAGAVFNKISR 235
T + DL+G+E I+ I+S+L S +GIWG GIGK+TI A+++K+S
Sbjct: 172 KTMTPSDDFGDLVGIENHIEAIKSVLCLESKEARIMVGIWGQSGIGKSTIGRALYSKLSI 231
Query: 236 HFEGSYFAC--NVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVL 293
F F + ++ +G KELLS++L +++K ++ V Q RL ++KVL
Sbjct: 232 QFHHRAFITYKSTSGSDVSGMKLRWEKELLSEILGQKDIK-IEHFGVVEQ--RLKQQKVL 288
Query: 294 IVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHADAHKL 353
I+ DDV+ ++ L+G+ + F SGS++I+ T+D+Q+L E+D IY+++ A +
Sbjct: 289 ILLDDVDSLEFLKTLVGKAEWFGSGSRIIVITQDRQLLKAHEIDLIYEVEFPSEHLALTM 348
Query: 354 FTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIVPH 413
+ AF D + ELA + K A +PL L VLG L GR+KE W M +L +
Sbjct: 349 LCRSAFGKDSPPDDFKELAFEVAKLAGNLPLGLSVLGSSLKGRTKEWWMEMMPRLRNGLN 408
Query: 414 MEIQEVLKISYDSL---------------------------------------------D 428
+I + L++SYD L
Sbjct: 409 GDIMKTLRVSYDRLHQKDQDMFLYIACLFNGFEVSYVKDLLKDNVGFTMLTEKSLIRITP 468
Query: 429 DSQKRMHDLLRAMGREIVRKESIVDPGKRSRLWHDEDIYEVLKKNTGTEAIKDISLN--- 485
D MH+LL +GREI R +S +PGKR L + EDI+EV+ + TGTE + I L
Sbjct: 469 DGYIEMHNLLEKLGREIDRAKSKGNPGKRRFLTNFEDIHEVVTEKTGTETLLGIRLPFEE 528
Query: 486 -MSDNEKEIFARTFSTMTNLGHLK 508
S I +F M NL +L+
Sbjct: 529 YFSTRPLLIDKESFKGMRNLQYLE 552
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Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1. Arabidopsis thaliana (taxid: 3702) |
| >sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (690), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 238/863 (27%), Positives = 406/863 (47%), Gaps = 120/863 (13%)
Query: 998 TASKIGVYGVGGIGKTAALKAL----ISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQ 1053
KIGV+G+GG+GKT ++ L + Y + F ++IWVTVS+ ++ +++Q + ++
Sbjct: 133 NVQKIGVWGMGGVGKTTLVRTLNNDLLKYAATQ-QFALVIWVTVSKDFDLKRVQMDIAKR 191
Query: 1054 LSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENG-SKIFMA 1112
L + + ++++ + FLL+LDDVW IDL+ +GIP+ + SK+ +
Sbjct: 192 LGKRFTREQMNQLGLTICERLIDLKNFLLILDDVWHPIDLDQLGIPLALERSKDSKVVLT 251
Query: 1113 SRELDVCRNMDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLL 1172
SR L+VC+ M N +K+ L K+AWELFC VG + S ++ A+ + CCGLPL
Sbjct: 252 SRRLEVCQQMMTNENIKVACLQEKEAWELFCHNVGEVANSDNVKPIAKDVSHECCGLPLA 311
Query: 1173 TIVTAKALAGERNVSVWKHASR--KFSLPITIEECCTEDLIELLKFSFDQLKDHDVKSCF 1230
I + L G+ V VWKH K S P E E + LK S+D L+D ++KSCF
Sbjct: 312 IITIGRTLRGKPQVEVWKHTLNLLKRSAPSIDTE---EKIFGTLKLSYDFLQD-NMKSCF 367
Query: 1231 LHCSLFPEDREVSIVEFIDYCIQEGIIVGT--LANAHKRGHQIVDVLVDASLLLINEVHN 1288
L C+LFPED + + E I Y + EG++ G + G +V+ L D+ LL + +
Sbjct: 368 LFCALFPEDYSIKVSELIMYWVAEGLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCD 427
Query: 1289 SIRMPGLMKDLAFGILSSSTGDRCFLSTAEGFQFLSRAYSRLAELPNAGTSSLRSPERSR 1348
+++M +++D A +SS EGF
Sbjct: 428 TVKMHDVVRDFAIWFMSSQ---------GEGF---------------------------- 450
Query: 1349 LFIPEAYQFLLGARAGLTEPPSEEEWTHAKMIFFMDNDLQTLPGRP-SCPNLLTLFLQRN 1407
+ ++ R GL E P ++ + + + M N L+ LP L L LQ N
Sbjct: 451 ------HSLVMAGR-GLIEFPQDKFVSSVQRVSLMANKLERLPNNVIEGVETLVLLLQGN 503
Query: 1408 CRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGS 1467
++ +P F + +L++L+LS RI++LP++ NL L+ L+LR+C L L P + S
Sbjct: 504 SHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRNL-PSLES 562
Query: 1468 LECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQ 1527
L L+ LDL + I+ LP+ + L+SLRY+ V + Y+ + I P I LS L+
Sbjct: 563 LVKLQFLDLHESAIRELPRGLEALSSLRYICV---SNTYQLQSI--PAGTILQ--LSSLE 615
Query: 1528 ALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQL 1587
L+ G K +++ + + EV+ L L L+ + V F ++L
Sbjct: 616 VLDMAGSAYSWGIKGEEREGQATLDEVTCLPHLQFLAIKLLD---VLSFSYEFDSLTKRL 672
Query: 1588 TEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDH- 1646
T+F+F+ ++S+ T + CL + + +L H T+ +++
Sbjct: 673 TKFQFLFS-PIRSVSPPGTG---------EGCLAISDVNVSNASIGWLLQHVTSLDLNYC 722
Query: 1647 --------------HLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSL 1692
S V++ + Y L + S C E +FP+L
Sbjct: 723 EGLNGMFENLVTKSKSSFVAMKALSIHYFPSLS--LASGC----------ESQLDLFPNL 770
Query: 1693 ENLTLNHLWDLTCIWQ--GILPEGSFAELRILSIHACRHLEYVFTCSMIQ-FLAKLEELT 1749
E L+L+++ +L I + G L +L++L + CR L+ +F+ ++ L L+E+
Sbjct: 771 EELSLDNV-NLESIGELNGFLGM-RLQKLKLLQVSGCRQLKRLFSDQILAGTLPNLQEIK 828
Query: 1750 VEYCLAVKSIILDGEITYSSCI--MLPSLKKLRLHHLPELANIW--RNDWPSLEYISFYG 1805
V CL ++ + + C +LP L ++L +LP+L ++ R SLE++
Sbjct: 829 VVSCLRLEELFNFSSVPVDFCAESLLPKLTVIKLKYLPQLRSLCNDRVVLESLEHLEVES 888
Query: 1806 CPKLKKM----GMDSKLKETLIW 1824
C LK + G + E + W
Sbjct: 889 CESLKNLPFVPGNTGMINEQMAW 911
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Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 166/507 (32%), Positives = 260/507 (51%), Gaps = 53/507 (10%)
Query: 1002 IGVYGVGGIGKTAALKALISYPEVKV-MFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKD 1060
IGVYG GG+GKT ++++ + K + V+IWV +SR + IQ+ V +L L +
Sbjct: 178 IGVYGPGGVGKTTLMQSINNELITKGHQYDVLIWVQMSREFGECTIQQAVGARLGLSWDE 237
Query: 1061 RETDAQVAEKLWQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVCR 1120
+ET A K+++ L ++FLLLLDDVWE+IDLE G+P P EN K+ +R + +C
Sbjct: 238 KETGENRALKIYRALRQKRFLLLLDDVWEEIDLEKTGVPRPDRENKCKVMFTTRSIALCN 297
Query: 1121 NMDVNMVVKLETLSMKDAWELFCKEV--GGIIQSPDIHLYARAIVKGCCGLPLLTIVTAK 1178
NM +++E L K AWELFC +V +++S I A IV C GLPL I
Sbjct: 298 NMGAEYKLRVEFLEKKHAWELFCSKVWRKDLLESSSIRRLAEIIVSKCGGLPLALITLGG 357
Query: 1179 ALAGERNVSVWKHASRKFS-LPITIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCSLFP 1237
A+A W HAS + P ++ + LLKFS+D L+ ++SCFL+C+LFP
Sbjct: 358 AMAHRETEEEWIHASEVLTRFPAEMKG--MNYVFALLKFSYDNLESDLLRSCFLYCALFP 415
Query: 1238 EDREVSIVEFIDYCIQEGIIVGTLA-NAHKRGHQIVDVLVDASLLLINEVHNSIRMPGLM 1296
E+ + I + ++Y + EG + + N +G+ ++ L A LL + ++M ++
Sbjct: 416 EEHSIEIEQLVEYWVGEGFLTSSHGVNTIYKGYFLIGDLKAACLLETGDEKTQVKMHNVV 475
Query: 1297 KDLAFGILSSSTGDRCFLSTAEGFQFLSRAYSRLAELPNAGTSSLRSPERSRLFIPEAYQ 1356
+ A ++++ +G Y L
Sbjct: 476 RSFAL-----------WMASEQG------TYKEL-------------------------- 492
Query: 1357 FLLGARAGLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPS 1416
L+ G TE P E W A +I +DN +QTLP + CP L TL LQ+N L+ IP
Sbjct: 493 ILVEPSMGHTEAPKAENWRQALVISLLDNRIQTLPEKLICPKLTTLMLQQNSSLKKIPTG 552
Query: 1417 FFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDL 1476
FF M L+VL+LS T I +P ++ L L L + + VLP E+G+L L+ LDL
Sbjct: 553 FFMHMPVLRVLDLSFTSITEIPLSIKYLVELYHLSMSGTK-ISVLPQELGNLRKLKHLDL 611
Query: 1477 RGTE-IKMLPKE-IGKLTSLRYLTVFF 1501
+ T+ ++ +P++ I L+ L L +++
Sbjct: 612 QRTQFLQTIPRDAICWLSKLEVLNLYY 638
|
Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 234 bits (597), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 163/508 (32%), Positives = 248/508 (48%), Gaps = 79/508 (15%)
Query: 1002 IGVYGVGGIGKTAALKALIS-YPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCK- 1059
+G+YG+GG+GKT L + + + ++ F V+IWV VS+ KIQK + +L L K
Sbjct: 179 VGLYGMGGVGKTTLLTQINNKFSKLGGGFDVVIWVVVSKNATVHKIQKSIGEKLGLVGKN 238
Query: 1060 -DRETDAQVAEKLWQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDV 1118
D + Q A + VL +KF+LLLDD+WE+++L+ +G+P P ENG K+ + +V
Sbjct: 239 WDEKNKNQRALDIHNVLRRKKFVLLLDDIWEKVELKVIGVPYPSGENGCKVAFTTHSKEV 298
Query: 1119 CRNMDVNMVVKLETLSMKDAWELFCKEVG--GIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176
C M V+ +++ L +AW+L K+VG + PDI AR + + CCGLPL V
Sbjct: 299 CGRMGVDNPMEISCLDTGNAWDLLKKKVGENTLGSHPDIPQLARKVSEKCCGLPLALNVI 358
Query: 1177 AKALAGERNVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCSLF 1236
+ ++ +R + W+HA+ + T ++++ +LK+S+D L D KSCFL+CSLF
Sbjct: 359 GETMSFKRTIQEWRHATEVLT-SATDFSGMEDEILPILKYSYDSLNGEDAKSCFLYCSLF 417
Query: 1237 PEDREVSIVEFIDYCIQEGIIVGTLA--NAHKRGHQIVDVLVDASLLLIN-EVHNSIRMP 1293
PED E+ I+Y I EG I A +G+ I+ LV +SLLL + + + M
Sbjct: 418 PEDFEIRKEMLIEYWICEGFIKEKQGREKAFNQGYDILGTLVRSSLLLEGAKDKDVVSMH 477
Query: 1294 GLMKDLAFGILS--SSTGDRCFLSTAEGFQFLSRAYSRLAELPNAGTSSLRSPERSRLFI 1351
+++++A I S +RC + G L ELP
Sbjct: 478 DMVREMALWIFSDLGKHKERCIVQAGIG----------LDELPEV--------------- 512
Query: 1352 PEAYQFLLGARAGLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLR 1411
E W K + M+N+ + + G P C L+TLFLQ N +L
Sbjct: 513 --------------------ENWRAVKRMSLMNNNFEKILGSPECVELITLFLQNNYKLV 552
Query: 1412 VIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECL 1471
I FF M SL VL+LS+ SL E LP E+ L L
Sbjct: 553 DISMEFFRCMPSLAVLDLSENH--SLSE---------------------LPEEISELVSL 589
Query: 1472 EVLDLRGTEIKMLPKEIGKLTSLRYLTV 1499
+ LDL GT I+ LP + +L L +L +
Sbjct: 590 QYLDLSGTYIERLPHGLHELRKLVHLKL 617
|
Disease resistance (R) protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 233 bits (595), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 233/860 (27%), Positives = 374/860 (43%), Gaps = 181/860 (21%)
Query: 1002 IGVYGVGGIGKTAALKALIS-YPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKD 1060
+G+YG+GG+GKT L + + + ++ F V+IWV VSR RKIQ+ + ++ L +
Sbjct: 179 LGLYGMGGVGKTTLLTKINNKFSKIDDRFDVVIWVVVSRSSTVRKIQRDIAEKVGLGGME 238
Query: 1061 --RETDAQVAEKLWQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDV 1118
+ D Q+A + VL KF+LLLDD+WE+++L+AVG+P P +NG K+ +R DV
Sbjct: 239 WSEKNDNQIAVDIHNVLRRRKFVLLLDDIWEKVNLKAVGVPYPSKDNGCKVAFTTRSRDV 298
Query: 1119 CRNMDVNMVVKLETLSMKDAWELFCKEVG--GIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176
C M V+ +++ L +++W+LF +VG + PDI AR + + C GLPL V
Sbjct: 299 CGRMGVDDPMEVSCLQPEESWDLFQMKVGKNTLGSHPDIPGLARKVARKCRGLPLALNVI 358
Query: 1177 AKALAGERNVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCSLF 1236
+A+A +R V W HA + ++++ +LK+S+D L +KSCFL+CSLF
Sbjct: 359 GEAMACKRTVHEWCHAIDVLTSSAIDFSGMEDEILHVLKYSYDNLNGELMKSCFLYCSLF 418
Query: 1237 PEDREVSIVEFIDYCIQEGII---VGTLANAHKRGHQIVDVLVDASLLLINEVHNS-IRM 1292
PED + +DY I EG I G N ++ G++I+ LV A LLL E + S ++M
Sbjct: 419 PEDYLIDKEGLVDYWISEGFINEKEGRERNINQ-GYEIIGTLVRACLLLEEERNKSNVKM 477
Query: 1293 PGLMKDLAFGILSSSTGDRCFLSTAEGFQFLSRAYSRLAELPNAGTSSLRSPERSRLFIP 1352
+++++A I SS G
Sbjct: 478 HDVVREMALWI-SSDLG------------------------------------------K 494
Query: 1353 EAYQFLLGARAGLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRV 1412
+ + ++ A GL E P ++W + I M+N+++ + C L TLFLQ+N ++
Sbjct: 495 QKEKCIVRAGVGLREVPKVKDWNTVRKISLMNNEIEEIFDSHECAALTTLFLQKNDVVK- 553
Query: 1413 IPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLE 1472
I FF M L VL+LS+ +SL E LP E+ L L
Sbjct: 554 ISAEFFRCMPHLVVLDLSEN--QSLNE---------------------LPEEISELASLR 590
Query: 1473 VLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETL 1532
+L T I LP + L L +L + S L S +S L L TL
Sbjct: 591 YFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSS------------LGSILGISNLWNLRTL 638
Query: 1533 SIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKF 1592
+ +D ++++ ++ V E QL E
Sbjct: 639 GL----------RDSRLLL-----------------DMSLVKEL---------QLLEHLE 662
Query: 1593 VVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVS 1652
V+ D+ S S V + + C + C++ V+ K + E +++L +
Sbjct: 663 VITLDISS--SLVAEPLLCSQRLVE-CIKEVDFKYLKEESVRVL---------------T 704
Query: 1653 LSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILP 1712
L G G+K C + E +T + + + P NL+
Sbjct: 705 LPTMGNLRKLGIKRCGMREIKIERTTSSSSRNKSPTTPCFSNLS---------------- 748
Query: 1713 EGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIM 1772
+ I H + L ++ F L L V + V+ II + + S +
Sbjct: 749 -----RVFIAKCHGLKDLTWLL------FAPNLTFLEVGFSKEVEDIISEEKAEEHSATI 797
Query: 1773 LPSLKKLRLHHLPELANIWRN-----DWPSLEYISFYGCPKLKKMGMDSK---LKETLIW 1824
+P +KL HL EL + R +P L+ I C KL+K+ +DSK E L+
Sbjct: 798 VP-FRKLETLHLFELRGLKRIYAKALHFPCLKVIHVEKCEKLRKLPLDSKSGIAGEELVI 856
Query: 1825 IKAEKKWWAELEWED--TQL 1842
E++W +EWED TQL
Sbjct: 857 YYGEREWIERVEWEDQATQL 876
|
Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5. Arabidopsis thaliana (taxid: 3702) |
| >sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 161/511 (31%), Positives = 244/511 (47%), Gaps = 79/511 (15%)
Query: 1002 IGVYGVGGIGKTAALKALIS-YPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCK- 1059
+G+YG+GG+GKT L + + + E F V+IWV VS+ + +IQ + ++L L +
Sbjct: 179 VGLYGMGGVGKTTLLTRINNKFSEKCSGFGVVIWVVVSKSPDIHRIQGDIGKRLDLGGEE 238
Query: 1060 -DRETDAQVAEKLWQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDV 1118
D + Q A ++ VL +KF+LLLDD+WE+++LE +G+P P +NG K+ +R DV
Sbjct: 239 WDNVNENQRALDIYNVLGKQKFVLLLDDIWEKVNLEVLGVPYPSRQNGCKVVFTTRSRDV 298
Query: 1119 CRNMDVNMVVKLETLSMKDAWELFCKEVG--GIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176
C M V+ +++ L +AWELF +VG + PDI AR + CCGLPL V
Sbjct: 299 CGRMRVDDPMEVSCLEPNEAWELFQMKVGENTLKGHPDIPELARKVAGKCCGLPLALNVI 358
Query: 1177 AKALAGERNVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCSLF 1236
+ +A +R V W++A S E E ++ +LK+S+D L VK CFL+CSLF
Sbjct: 359 GETMACKRMVQEWRNAIDVLS-SYAAEFPGMEQILPILKYSYDNLNKEQVKPCFLYCSLF 417
Query: 1237 PEDREVSIVEFIDYCIQEGII--VGTLANAHKRGHQIVDVLVDASLLLINEVHN-SIRMP 1293
PED + IDY I EG I + A +G++I+ +LV A LLL ++ ++M
Sbjct: 418 PEDYRMEKERLIDYWICEGFIDENESRERALSQGYEIIGILVRACLLLEEAINKEQVKMH 477
Query: 1294 GLMKDLAFGILS--SSTGDRCFLSTAEGFQFLSRAYSRLAELPNAGTSSLRSPERSRLFI 1351
+++++A I S +RC +
Sbjct: 478 DVVREMALWIASDLGEHKERCIVQVG---------------------------------- 503
Query: 1352 PEAYQFLLGARAGLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLR 1411
GL E P + W+ + + M+N+++ L G P C L TLFLQ+N L
Sbjct: 504 -----------VGLREVPKVKNWSSVRRMSLMENEIEILSGSPECLELTTLFLQKNDSLL 552
Query: 1412 VIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECL 1471
I FF + L VL+LS L LP ++ L L
Sbjct: 553 HISDEFFRCIPMLVVLDLSGN-----------------------SSLRKLPNQISKLVSL 589
Query: 1472 EVLDLRGTEIKMLPKEIGKLTSLRYLTVFFF 1502
LDL T IK LP + +L LRYL + +
Sbjct: 590 RYLDLSWTYIKRLPVGLQELKKLRYLRLDYM 620
|
Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g43730 OS=Arabidopsis thaliana GN=At5g43730 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 186/592 (31%), Positives = 294/592 (49%), Gaps = 69/592 (11%)
Query: 1002 IGVYGVGGIGKTAALKALIS-YPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCK- 1059
+G+YG+GGIGKT L++L + + E++ F V+IWV VS+ + IQ Q+L +L +
Sbjct: 175 LGLYGMGGIGKTTLLESLNNKFVELESEFDVVIWVVVSKDFQLEGIQDQILGRLRPDKEW 234
Query: 1060 DRETDAQVAEKLWQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVC 1119
+RET+++ A + L +KF+LLLDD+W ++DL +G+P P ENGSKI +R +VC
Sbjct: 235 ERETESKKASLINNNLKRKKFVLLLDDLWSEVDLIKIGVPPPSRENGSKIVFTTRSKEVC 294
Query: 1120 RNMDVNMVVKLETLSMKDAWELFCKEVGGII--QSPDIHLYARAIVKGCCGLPLLTIVTA 1177
++M + +K++ LS +AWELF VG II DI AR + C GLPL V
Sbjct: 295 KHMKADKQIKVDCLSPDEAWELFRLTVGDIILRSHQDIPALARIVAAKCHGLPLALNVIG 354
Query: 1178 KALAGERNVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCSLFP 1237
KA+ + V W+HA + P E ++ +LKFS+D LK+ ++K CFL+CSLFP
Sbjct: 355 KAMVCKETVQEWRHAINVLNSPGHKFPGMEERILPILKFSYDSLKNGEIKLCFLYCSLFP 414
Query: 1238 EDREVSIVEFIDYCIQEGIIVGTLA--NAHKRGHQIVDVLVDASLLLINEVHNSIRMPGL 1295
ED E+ + I+Y I EG I +G+ I+ +LV A LL+ E+ + ++M +
Sbjct: 415 EDFEIEKDKLIEYWICEGYINPNRYEDGGTNQGYDIIGLLVRAHLLIECELTDKVKMHDV 474
Query: 1296 MKDLAFGILSSSTGDRCFLSTAEGFQFLSRAYSRLAELPNAGTSSLRSPERSRLFIPEAY 1355
++++A I S F + E S A+ RL
Sbjct: 475 IREMALWINSD------FGNQQETICVKSGAHVRLI------------------------ 504
Query: 1356 QFLLGARAGLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPP 1415
P++ W + + + ++ + P+CPNL TL L N +L I
Sbjct: 505 -------------PNDISWEIVRQMSLISTQVEKIACSPNCPNLSTLLLPYN-KLVDISV 550
Query: 1416 SFFELMTSLKVLNLSKT-RIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVL 1474
FF M L VL+LS + LPE + NL LQ L L + LP + L L L
Sbjct: 551 GFFLFMPKLVVLDLSTNWSLIELPEEISNLGSLQYLNL-SLTGIKSLPVGLKKLRKLIYL 609
Query: 1475 DLRGTEIKMLPKEIGKLTSLRYLTVF-FFGSMY-----------KSEYIK-LPPDLISSD 1521
+L T + L +G T+L L V F S++ + +++K L + +
Sbjct: 610 NLEFTNV--LESLVGIATTLPNLQVLKLFYSLFCVDDIIMEELQRLKHLKILTATIEDAM 667
Query: 1522 ILSRLQALETLSIDVHPGDKRWDKDVKIVITEVS--GLTKLSSLSFHFPEIE 1571
IL R+Q ++ L+ + R ++++ V+ GL +L +S + EIE
Sbjct: 668 ILERVQGVDRLASSIRGLCLRNMSAPRVILNSVALGGLQQLGIVSCNISEIE 719
|
Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1866 | ||||||
| 224127917 | 1470 | tir-nbs-lrr resistance protein [Populus | 0.318 | 0.404 | 0.414 | 1e-125 | |
| 255561496 | 876 | TMV resistance protein N, putative [Rici | 0.291 | 0.621 | 0.427 | 1e-124 | |
| 356550897 | 970 | PREDICTED: TMV resistance protein N-like | 0.287 | 0.552 | 0.430 | 1e-123 | |
| 255569048 | 1084 | leucine-rich repeat-containing protein, | 0.305 | 0.525 | 0.423 | 1e-122 | |
| 255564976 | 944 | TMV resistance protein N, putative [Rici | 0.264 | 0.522 | 0.464 | 1e-121 | |
| 255537139 | 1137 | leucine-rich repeat-containing protein, | 0.267 | 0.438 | 0.452 | 1e-120 | |
| 224127754 | 1125 | tir-nbs-lrr resistance protein [Populus | 0.296 | 0.491 | 0.426 | 1e-119 | |
| 297739493 | 982 | unnamed protein product [Vitis vinifera] | 0.430 | 0.817 | 0.331 | 1e-118 | |
| 317106744 | 947 | JHS03A10.2 [Jatropha curcas] | 0.286 | 0.563 | 0.418 | 1e-117 | |
| 255555357 | 1094 | leucine-rich repeat-containing protein, | 0.288 | 0.492 | 0.418 | 1e-116 |
| >gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 273/658 (41%), Positives = 382/658 (58%), Gaps = 64/658 (9%)
Query: 6 SSPPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPESLLGT 65
SS K YDVFLSFRG+DTRDNF SHL ALC+ ++TFID+ L+RG+EI +LL T
Sbjct: 3 SSSAVAQKWKYDVFLSFRGKDTRDNFVSHLRDALCRKQIKTFIDDKLERGEEITGALLRT 62
Query: 66 IEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQIGSFGD 125
IE S IS+IIFS YASS WC+DEL+KILECK+ YGQIV+PVFY VDPS V +Q GSFG+
Sbjct: 63 IEESRISVIIFSRNYASSPWCVDELVKILECKKAYGQIVLPVFYHVDPSDVDQQTGSFGN 122
Query: 126 SFFMLEERFPYKMRN---WRSALTEAADLSGFDSCVIRPESRLVADIANEVLERLDDTFQ 182
+F LE F KM WR+ LT AA++SG+DS V RPES LV I + +L++L+
Sbjct: 123 AFAELERNFKQKMDKVPRWRADLTSAANISGWDSQVTRPESSLVEQIVHHILKKLNYASS 182
Query: 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYF 242
S+ K L+G++ R+++IE+ L T +GIWG+GG GKTTIAG +FNKI+R +EG YF
Sbjct: 183 SDLKGLVGMDSRMEQIEASLCTKLPEFCFVGIWGMGGTGKTTIAGEIFNKIAREYEGHYF 242
Query: 243 ACNVRAAEETGRLDDLRKELLSKLLNDRNVK-NFQNISVNFQSKRLARKKVLIVFDDVNH 301
NVR +E+ G L +R EL SK+ + N+ I F R+ RKK+LIVFDDVN
Sbjct: 243 LANVRESEKNGGLFRIRDELFSKITEEENLHIRTPRIGHPFIKDRICRKKILIVFDDVND 302
Query: 302 PRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHADAHKLFTQCAFRG 361
QIE+L+G + F GS++I+T+RDKQVL D I++++ L H +A LF+ AF+
Sbjct: 303 VDQIEMLLGGCESFGPGSRIILTSRDKQVLKK-YADKIFEVEGLNHREALHLFSLHAFKD 361
Query: 362 DHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIVPHMEIQEVLK 421
+ Y EL+ +A+ YA+G PLALKVLG L GR+ +EWESA+ K+E + ++ VL+
Sbjct: 362 NQPPYNYMELSVRAINYAKGNPLALKVLGSSLFGRTTKEWESALNKVEKLTRQKVHSVLR 421
Query: 422 ISYDSLDDSQK------------------------------------------------- 432
ISY++LD +K
Sbjct: 422 ISYEALDSEEKSIFLDIACFFRGHRVDFVKRILDGCGFKTDIGFSVLIDRCLIKISDDKV 481
Query: 433 RMHDLLRAMGREIVRKESIVDPGKRSRLWHDEDIYEVLKKNTGTEAIKDISLNMSD-NEK 491
MHDLL+ M ++VRKES+ + G +SRLW +D+Y+VL N GT ++ I L++S E
Sbjct: 482 EMHDLLQEMAHDVVRKESLDELGGQSRLWSPKDVYQVLTNNLGTGKVEGIFLDVSKIREI 541
Query: 492 EIFARTFSTMTNLGHLKAYESREIKDVMSDLEVVPFPEVYAKNLVSLKMWDG------KV 545
E+ + M L LK Y S V + + E ++ L L WDG
Sbjct: 542 ELSSTALGRMYKLRLLKIYNSE--AGVKCRVHLPHGLESLSEELRYLH-WDGYPLTSLPS 598
Query: 546 KERWDDVQKVDVECDRLDSHARAYWNHTDLKQLRLKLAEVRYLLQDAVRCGADQNLNI 603
R ++ ++++ C +++ R N +LK + L E L D + + LN+
Sbjct: 599 NFRPQNLVEINLSCSKVNRLWRGDQNLVNLKDVNLSNCEHITFLPDLSKARNLERLNL 656
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255561496|ref|XP_002521758.1| TMV resistance protein N, putative [Ricinus communis] gi|223538971|gb|EEF40568.1| TMV resistance protein N, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 267/625 (42%), Positives = 374/625 (59%), Gaps = 81/625 (12%)
Query: 7 SPPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPESLLGTI 66
+P +K YDVFLSFRGEDTRDNFTSHLYSAL + + TF+D ++KRG+EI S+ I
Sbjct: 2 APLATSEKKYDVFLSFRGEDTRDNFTSHLYSALNKKKIFTFMDKEIKRGEEISPSIAKAI 61
Query: 67 EASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQIGSFGDS 126
+ S +S+IIFSEKYA SKWCLDEL KILECK+ GQIVIPVFYRVDP HVR Q GSF +
Sbjct: 62 KGSKLSVIIFSEKYAFSKWCLDELTKILECKKMNGQIVIPVFYRVDPVHVRNQRGSFACA 121
Query: 127 FFMLEERFPYKM---RNWRSALTEAADLSGFDSCVIRPESRLVADIANEVLERLDDTFQS 183
F EE +M +WRSAL EA +SG++S V RPES+L+ +I ++ ++L+ T S
Sbjct: 122 FAKHEETLKERMEKVESWRSALNEAGSISGWNSLVARPESKLIEEIVKDISKKLNQTSPS 181
Query: 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 243
S L+G++ R+++IES+L + V +G+WG+GGIGKTT+AGA+F++IS +E SYF
Sbjct: 182 HSIGLVGIDSRLEQIESMLCLDMSDVRIIGVWGMGGIGKTTLAGAIFDQISAQYESSYFL 241
Query: 244 CNVRAAEETGRLDDLRKELLSKLLNDRNVKN-FQNISVNFQSKRLARKKVLIVFDDVNHP 302
NVR + L +LR++L SK+L ++N+ N+ F RL+RKK+L+V DDV+
Sbjct: 242 GNVREQLKRCLLAELREKLFSKILEEKNLDTRTPNLGNTFLKDRLSRKKILVVLDDVDST 301
Query: 303 RQI-ELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHADAHKLFTQCAFRG 361
Q+ ELL G+ D F GS++I+T+RDKQVL N VD IY+++ L +A +LF+ AF+
Sbjct: 302 MQLQELLPGQHDLFGPGSRIIVTSRDKQVLKNV-VDEIYKVEGLNQHEALQLFSLNAFKK 360
Query: 362 DHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIVPHMEIQEVLK 421
+ E++ + YA+G PLAL+VLGC L +SKE+WESA+ KL VP+ EIQ+VL+
Sbjct: 361 NSPTNDRVEISTRVADYAKGNPLALRVLGCALFDKSKEDWESALEKLRNVPNGEIQKVLR 420
Query: 422 ISYDSLDDSQK------------------------------------------------- 432
SYD LD ++
Sbjct: 421 FSYDGLDREERNIFLDIACFFRGEDRNYATKILDGCYSSVGFIISTLIDKSLVSVYRSKL 480
Query: 433 RMHDLLRAMGREIVRKESIVDPGKRSRLWHDEDIYEVLKKNTGTEAIKDISLNMSDN-EK 491
MHDLL+ G IVR+E ++ KRSRLW+ +D+Y VL K GT+AI+ ISL++S E
Sbjct: 481 EMHDLLQETGWSIVREEPELE--KRSRLWNPKDVYYVLTKKKGTKAIEGISLDLSTTREM 538
Query: 492 EIFARTFSTMTNLGHLKAYES-----------------REIKDVMSDLEVVPF------P 528
+ F+ M +L LK Y S + + D + L+ F P
Sbjct: 539 HLECDAFAGMDHLRILKFYTSNSSIGCKHKMHLPGCGLQSLSDELRYLQWHKFPSRSLPP 598
Query: 529 EVYAKNLVSLKMWDGKVKERWDDVQ 553
+ A+NLV L + +++ W VQ
Sbjct: 599 KFCAENLVVLDLPHSNIEQLWKGVQ 623
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550897|ref|XP_003543819.1| PREDICTED: TMV resistance protein N-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 266/618 (43%), Positives = 361/618 (58%), Gaps = 82/618 (13%)
Query: 14 KMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPESLLGTIEASTISI 73
K YDVFLSFRGEDTR NFTSHLY AL Q +ET+ID L++GDEI +L+ IE S +S+
Sbjct: 18 KKYDVFLSFRGEDTRKNFTSHLYEALKQKKIETYIDYRLEKGDEISAALIKAIEDSHVSV 77
Query: 74 IIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQIGSFGDSFFMLEER 133
+IFSE YASSKWCL EL KI+ECK+ GQIVIPVFY +DPSHVRKQ GS+ SF +
Sbjct: 78 VIFSENYASSKWCLGELGKIMECKKERGQIVIPVFYNIDPSHVRKQTGSYEQSF--AKHT 135
Query: 134 FPYKMRNWRSALTEAADLSGFDSCVIRPESRLVADIANEVLERLDDTFQSESKDLIGVEW 193
+ W++ALTEAA+L+ +DS + R ES + DI +VL +L + + K+L+GVE
Sbjct: 136 GEPRCSKWKAALTEAANLAAWDSQIYRTESEFLKDIVKDVLRKLAPRYPNHRKELVGVEE 195
Query: 194 RIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETG 253
++IESLL+ GS+ V LGIWG+GGIGKTT+A A+++K+S FEG F NVR +
Sbjct: 196 NYEKIESLLKIGSSKVRILGIWGMGGIGKTTLASALYDKLSPEFEGCCFLANVREESDKH 255
Query: 254 RLDDLRKELLSKLLNDRNVKNFQNISV---NFQSKRLARKKVLIVFDDVNHPRQIELLIG 310
LR +L S+LL + N+ F S +F RL RKKV IV DDV+ Q+E LI
Sbjct: 256 GFKALRNKLFSELLENENL-CFDASSFLVSHFVLSRLGRKKVFIVLDDVDTSEQLENLIE 314
Query: 311 RLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTE 370
D GS+VI+TTR+KQ+ + +VD IY++KEL + KLF FR GY +
Sbjct: 315 DFDFLGLGSRVIVTTRNKQIFS--QVDKIYKVKELSIHHSLKLFCLSVFREKQPKHGYED 372
Query: 371 LAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIVPHMEIQEVLKISYDSLDDS 430
L+ A+ Y +G+PLALKVLG L RSK+ WE +RKL+ P+MEI VLK+SYD LD S
Sbjct: 373 LSRSAISYCKGIPLALKVLGASLRSRSKQAWECELRKLQKFPNMEIHNVLKLSYDGLDYS 432
Query: 431 QK--------------------------------------------------RMHDLLRA 440
QK MHDL++
Sbjct: 433 QKEIFLDIACFLRGKQRDHVTSILEAFDFPAASGIEVLLDKALITISGGIQIEMHDLIQE 492
Query: 441 MGREIVRKESIVDPGKRSRLWHDEDIYEVLKKNTGTEAIKDISLNMSDNEKEIFAR--TF 498
MG +IV +E I DPG+RSRLW E++++VLK N GTE ++ + L++S ++++
Sbjct: 493 MGWKIVHQEHIKDPGRRSRLWKHEEVHDVLKYNKGTEVVEGVILDLSKLTEDLYLSFDFL 552
Query: 499 STMTNLGHLKAYE------------------SREIKDVMSD---LEVVPFPEVYAKNLVS 537
+ MTN+ LK + S +++ + D LE +P A+ LV
Sbjct: 553 AKMTNVRFLKIHSWSKFTIFNVYLPNGLDSLSYKLRYLHWDGFCLESLP-SRFCAEQLVE 611
Query: 538 LKMWDGKVKERWDDVQKV 555
L M K+K+ WD VQ +
Sbjct: 612 LCMHCSKLKKLWDGVQNL 629
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255569048|ref|XP_002525493.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223535172|gb|EEF36851.1| leucine-rich repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 271/640 (42%), Positives = 370/640 (57%), Gaps = 70/640 (10%)
Query: 1 MASSSSSPPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPE 60
MASSS+SP K+ +DVFLSFRG+DTRDNFTSHLY ALC+ ++TFIDN L+RG+EI
Sbjct: 1 MASSSNSP----KRKFDVFLSFRGKDTRDNFTSHLYDALCRKKIKTFIDNGLERGEEITP 56
Query: 61 SLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQI 120
+LL TIE S IS+I+FSE YASS WCLDE++KILEC+ +GQ V+PVFY VDPS V +Q
Sbjct: 57 ALLRTIEESLISVIVFSENYASSPWCLDEMVKILECRETHGQAVLPVFYHVDPSDVEEQN 116
Query: 121 GSFGDSFFMLEERFPYKMRNWRSALTEAADLSGFDSCVIRPESRLVADIANEVLERLDDT 180
GSF + LE+ F K+ WR+ L +AA +SG+DS I E++LV I +L++L+
Sbjct: 117 GSFALTLVELEKNFKDKVSKWRTDLMKAASISGWDSRAIGSEAKLVKHIVEHILQKLNKA 176
Query: 181 FQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGS 240
++ K LIG++ I++I+ LL+ G + +G+WG+ GIGKTTIAGA+FN +S FEG
Sbjct: 177 SSTDLKGLIGLDSHIRKIKKLLQIGLPDIRTVGLWGMSGIGKTTIAGAIFNTLSSQFEGC 236
Query: 241 YFACNVRAAEETGRLDDLRKELLSKLLNDRNVK-NFQNISVNFQSKRLARKKVLIVFDDV 299
F N++ E L LR +LLS++L + NV +I RL KKVL+V DDV
Sbjct: 237 CFLENIKEESERCGLVPLRDKLLSEILMEGNVHIATPSIGSTSLKNRLRHKKVLLVLDDV 296
Query: 300 NHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHADAHKLFTQCAF 359
N QIE LIGR D F GS+V++T+RDKQVL N VD IY+++ L +A +LF AF
Sbjct: 297 NDVDQIETLIGRCD-FGLGSRVLVTSRDKQVLKNV-VDEIYEVEGLSDDEALQLFNLHAF 354
Query: 360 RGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIVPHMEIQEV 419
+ + +L+++ +K+AQG PLALKVLG L RSK++WESA+ KLE P +I V
Sbjct: 355 KDNCSTTDKIKLSYRVVKHAQGNPLALKVLGSSLFARSKQDWESALEKLERTPQPKIFHV 414
Query: 420 LKISYDSLDDSQK----------------------------------------------- 432
L+ S+D+LDD +K
Sbjct: 415 LRSSFDALDDEEKSIFLDIACFFKGQQIGFVKKILNGCGLSAGIGISVLAGKCLVSIQEN 474
Query: 433 --RMHDLLRAMGREIVRKESIVDPGKRSRLWHDEDIYEVLKKNTGTEAIKDI-----SLN 485
MHDLL+ M +EIV +ESI + GKRSRLW D +VL KN GTE ++ I +
Sbjct: 475 KLEMHDLLQEMAQEIVHQESIKELGKRSRLWSPSDACQVLTKNLGTERVEGIFFDTYKMG 534
Query: 486 MSDNEKEIFARTFST--MTNLGHLKAYESREIKDVMSD---LEVVPFPEVYAKNLVSLKM 540
D F R NL + S E++ + D L +P A+NLV L +
Sbjct: 535 AVDLSSRAFVRIVGNNCKVNLPQGLDFLSDELRYLHGDGYPLSYMP-SNFQAENLVQLTL 593
Query: 541 WDGKVKERWDDVQKVDVECDRLDSHARAYWNHTDLKQLRL 580
+K+ W VQ + C + W D+K+L L
Sbjct: 594 AYSSIKQLWTGVQLILSGCSSITEFPHVSW---DIKKLFL 630
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564976|ref|XP_002523481.1| TMV resistance protein N, putative [Ricinus communis] gi|223537309|gb|EEF38940.1| TMV resistance protein N, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1143), Expect = e-121, Method: Compositional matrix adjust.
Identities = 256/551 (46%), Positives = 341/551 (61%), Gaps = 58/551 (10%)
Query: 16 YDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPESLLGTIEASTISIII 75
YDVF+SFRGEDTRDNFTSHLY+AL Q ++ F+D+ L RG+EI +L+ IE S +S+II
Sbjct: 16 YDVFVSFRGEDTRDNFTSHLYAALHQKQIKAFVDDKLSRGEEISAALVKVIEESMVSVII 75
Query: 76 FSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQIGSFGDSFFMLEERFP 135
FSE YA S WCLDEL+KILECK+ GQIV+PVFY VDPS V +Q G FG +F E+ F
Sbjct: 76 FSENYAFSPWCLDELVKILECKKTVGQIVLPVFYHVDPSDVAEQKGGFGAAFIEHEKCFK 135
Query: 136 Y---KMRNWRSALTEAADLSGFDSCVIRPESRLVADIANEVLERLDDTFQS-ESKDLIGV 191
K++ WR+ALTEAA++SG+ S VIR ES+L+ +IA ++L++L+ S +SK L+G+
Sbjct: 136 ERIDKLQKWRAALTEAANISGWSSSVIRSESKLIQEIAEDILKKLNHMSSSTDSKGLVGI 195
Query: 192 EWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEE 251
RI +IE LL A V LG+WG+GG GKTT A VFN+IS F+ F NV E
Sbjct: 196 NSRIDKIELLLCVELADVRFLGLWGMGGAGKTTTAEVVFNRISTQFDSCCFLANVNEESE 255
Query: 252 TGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPRQIELLIGR 311
L L+++L SKLL NV + I F RL +KVLIV DDVN+ RQ+E L G
Sbjct: 256 RYGLLKLQRQLFSKLLGQDNVNYAEGI---FDKSRLKHRKVLIVLDDVNNLRQLENLAGE 312
Query: 312 LDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTEL 371
+ F GS++I+T+RDK VL N + D IY++++L H +A +LF+ AFR + A Y +L
Sbjct: 313 HNWFGPGSRIILTSRDKDVLKN-KTDAIYKIEDLDHHEALQLFSLNAFRQECPKADYMKL 371
Query: 372 AHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIVPHMEIQEVLKISYDSLDDSQ 431
+ + + YA+G PL LKVLG +L R+ +EWESA+ KLE + EIQ VLK+SYD LDD +
Sbjct: 372 SKRVINYAKGNPLGLKVLGSFLYQRNIKEWESALHKLERSTNKEIQNVLKVSYDGLDDEE 431
Query: 432 K-------------------------------------------------RMHDLLRAMG 442
K +H+LL+ MG
Sbjct: 432 KDIFLDVACFFNGEDRDFVTRILNGCGFSADIAISVLVSKSLLTISNNTLAIHNLLQQMG 491
Query: 443 REIVRKESIVDPGKRSRLWHDEDIYEVLKKNTGTEAIKDISLNMSDNEKEIFA-RTFSTM 501
IVR+ES +PG+RSRL ED+ VL KNTGTEAI+ I L+MS + K + + F M
Sbjct: 492 WGIVRQESTKEPGRRSRLCTSEDVVHVLSKNTGTEAIEGIYLDMSKSRKVYLSPKAFERM 551
Query: 502 TNLGHLKAYES 512
NL LK + S
Sbjct: 552 HNLRLLKFHHS 562
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537139|ref|XP_002509636.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223549535|gb|EEF51023.1| leucine-rich repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 259/572 (45%), Positives = 352/572 (61%), Gaps = 73/572 (12%)
Query: 1 MASSSSSPPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDN-DLKRGDEIP 59
MA+S S+ + YDVFLSFRGEDTRDNFTSHL++AL + +V TF+DN DL G+EI
Sbjct: 1 MATSLSTSHTTHQWKYDVFLSFRGEDTRDNFTSHLFAALSRKSVITFMDNNDLHVGEEIT 60
Query: 60 ESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQ 119
++ IE S I+I+IFSE+YA S+WCL+E+++I+ECK GQ+V+PVFY V PS V
Sbjct: 61 PAISKAIEESKIAIVIFSERYAFSRWCLNEIVRIIECKETCGQLVLPVFYHVGPSDVS-- 118
Query: 120 IGSFGDSFFMLEERFPY-----KMRNWRSALTEAADLSGFDSCVIRPESRLVADIANEVL 174
+ E FP K++ W++AL++AA+LS FDS V RPES+LV +I L
Sbjct: 119 ---------VFAEAFPSYDQFEKVQKWKNALSKAANLSAFDSRVTRPESKLVDEIVMYTL 169
Query: 175 ERLDDTFQSES-KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKI 233
++L ++ S+ + ++GV+ RI++I+ LL GS V LGIWG+GGIGKTT+A AVF +I
Sbjct: 170 KQLKQSYSSDVVEGIVGVDSRIEQIKELLSIGSVDVRFLGIWGMGGIGKTTLAEAVFYQI 229
Query: 234 SRHFEGSYFACNVRAA-EETGRLDDLRKELLSKLLNDRNVK-NFQNISVNFQSKR-LARK 290
+ FEGS F NVR E+ G L L++ELLSK L R+ K + NI +F K+ L +
Sbjct: 230 AYQFEGSCFLANVRGNFEKNGGLARLQEELLSKTLEKRDFKIDTPNIGYSFWVKQMLKHR 289
Query: 291 KVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHADA 350
+VLIV DD N Q++LL+G D F GS++I+T+RDKQVLT VD IY++KELVH +A
Sbjct: 290 RVLIVVDDANDSEQLDLLVGSHDWFGPGSRIIVTSRDKQVLTKI-VDDIYEVKELVHHEA 348
Query: 351 HKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEI 410
+LF Q F+ + Y+ L+ ++YA+GVPLALKVLG +L G+SK EWESA+ KL+
Sbjct: 349 LQLFNQTTFKKKCVPEDYSYLSDLVIEYAKGVPLALKVLGSFLFGKSKTEWESALDKLKK 408
Query: 411 VPHMEIQEVLKISYDSLDDSQK-------------------------------------- 432
PH Q VLKISYD LD +K
Sbjct: 409 APHRATQNVLKISYDGLDAEEKNIFLDIACFFRGESVEMVTKILDGCGFSTKIGLCLLVD 468
Query: 433 -----------RMHDLLRAMGREIVRKESIVDPGKRSRLWHDEDIYEVLKKNTGTEAIKD 481
MHDLL+ MG+EIV +ES P +R+RLW+ EDI V +N GTE I+
Sbjct: 469 KSLITILNDKVEMHDLLQEMGKEIVLQES-KQPSQRTRLWNHEDILHVFSRNLGTETIEG 527
Query: 482 ISLNMSD-NEKEIFARTFSTMTNLGHLKAYES 512
+ LN S N+ E+ + F M NL LK Y+S
Sbjct: 528 MCLNTSMINKIELNSNAFGRMYNLRFLKFYQS 559
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 274/642 (42%), Positives = 365/642 (56%), Gaps = 89/642 (13%)
Query: 13 KKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPESLLGTIEASTIS 72
++ YDVFLSFRGEDTR F SHLY+AL + + TFID L RG+EI SLL IE S +S
Sbjct: 12 QEKYDVFLSFRGEDTRVCFVSHLYAALKRKQISTFIDYKLNRGEEISPSLLKAIEDSKLS 71
Query: 73 IIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQIGSFGDSFFMLEE 132
+++FS+ YASSKWCL+EL KILECK+ GQ+VIPVFYRVDPSHVR Q GSF D+F ++
Sbjct: 72 VVVFSDNYASSKWCLEELAKILECKKVKGQMVIPVFYRVDPSHVRNQTGSFADAFARHDQ 131
Query: 133 RFPYKMR---NWRSALTEAADLSGFDSCVIRPESRLVADIANEVLERLDDT-FQSESKDL 188
KM NWR+A+ EAA+LSG+DS I+ ES V DI ++L +L T + L
Sbjct: 132 LLKEKMEKVLNWRAAMREAANLSGWDSHNIKSESEFVDDIVRDILNKLHQTSMSTHHTSL 191
Query: 189 IGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRA 248
IG++ RIK++E+LL+ S V +GIWG+GGIGKTTIA AV++ +S FEG F NVR
Sbjct: 192 IGIDARIKKVETLLKMESQDVRIVGIWGMGGIGKTTIAKAVYDNVSAQFEGFLFVANVRE 251
Query: 249 AEETGRLDDLRKELLSKLLNDRNVKNFQNISVN--FQSKRLARKKVLIVFDDVNHPRQIE 306
+ + L+K +L +LL D+++ N +S F RL RKKVLIV DDV+ RQ+E
Sbjct: 252 EIKRHSVVGLQKNILPELL-DQDILNTGPLSFGNAFVMDRLLRKKVLIVLDDVDSSRQLE 310
Query: 307 LLIGRLD-RFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHADAHKLFTQCAFRGDHLD 365
L+ F GS++++T+RDKQVLTN VD IY ++ L H +A +LF AF+ +
Sbjct: 311 ELLPEPHVSFGPGSKILLTSRDKQVLTNV-VDEIYDVERLNHHEALQLFNMKAFKNYNPT 369
Query: 366 AGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIVPHMEIQEVLKISYD 425
++EL K + YAQG PLAL VLG L GRSKEEW S + KL V EIQ VL+ISYD
Sbjct: 370 IDHSELVEKIVDYAQGNPLALIVLGSALYGRSKEEWCSVLNKLGKVSSREIQNVLRISYD 429
Query: 426 SLDDSQKR-------------------------------------------------MHD 436
LDD Q+ MHD
Sbjct: 430 GLDDEQQEIFLDLAFFFNGANRDRVTKILDGCYSAACLDISVLFEKSLITTPGCTVNMHD 489
Query: 437 LLRAMGREIVRKESIVDPGKRSRLWHDEDIYEVLKKNTGTEAIKDISLNMSDN-EKEIFA 495
LR M IVR+ES + PGKRSRL ED+Y+ L K GTEA++ I L++S++ E + +
Sbjct: 490 SLREMAFSIVREESKI-PGKRSRLCDPEDVYQALVKKKGTEAVEGICLDISESREMHLKS 548
Query: 496 RTFSTMTNLGHLKAYESREIK------------------DVMSD---------LEVVPFP 528
FS M L LK + + D +SD + P
Sbjct: 549 DAFSRMDRLRILKFFNHFSLDEIFIMDNKDKVHLPHSGLDYLSDELRYLHWDGFPLKTLP 608
Query: 529 EVY-AKNLVSLKMWDGKVKERWDDVQKVDVECDRLDSHARAY 569
+ + A+N+V L D K+++ W VQ + V R+D Y
Sbjct: 609 QSFCAENIVELIFPDSKIEKLWTGVQDL-VHLRRMDLSGSPY 649
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739493|emb|CBI29675.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 298/899 (33%), Positives = 463/899 (51%), Gaps = 96/899 (10%)
Query: 966 PIPVIKLGTSNVTAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEV 1025
P PV K + + V++I ++ D +IGV+G G GKT ++ L ++ ++
Sbjct: 141 PEPVRKRHAPRIEENSALHMAVQEILSFLEDEQIQRIGVWGTVGTGKTTIMQNLNNHEQI 200
Query: 1026 KVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLD 1085
MF ++IWVTVS+ W+ K+Q ++RQL L + + A ++ + L +K+L+LLD
Sbjct: 201 AKMFDIVIWVTVSKEWSIEKLQDAIMRQLKLDMERFADIEENARRISEELKEKKYLVLLD 260
Query: 1086 DVWEQIDLEAV-GIPVPGSENGSKIFMASRELDVCRNMDVNMVVKLETLSMKDAWELFCK 1144
+V E IDL AV GIP + SK+ +ASR VC M+ + ++ ++ LS DAW +F +
Sbjct: 261 EVQENIDLNAVMGIP---NNQDSKVVLASRNRCVCYEMEADELINVKRLSPADAWNMFQE 317
Query: 1145 EVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALAGE-RNVSVWKHASRKFSLPITIE 1203
+VG I SP I A +VK C GLPLL + + ++VS+W+ + +++
Sbjct: 318 KVGHPISSPLIKPIAEQVVKECDGLPLLIDRIGRTFRKKGKDVSLWRDGLNRLRRWESVK 377
Query: 1204 ECCTEDLIELLKFSFDQLKDHDVKSCFLHCSLFPEDREVSIVEFIDYCIQ----EGII-- 1257
+++++ LKF +++L D + K CFL+ +L+PE+ E+ +IDY ++ EG+I
Sbjct: 378 TEGMDEVLDFLKFCYEEL-DRNKKDCFLYGALYPEECEI----YIDYLLECWNAEGLIHD 432
Query: 1258 -------VGTLANAHKRGHQIVDVLVDASLLLINEVHNSIRMPGLMKDLAFGILSSSTGD 1310
+A +GH I+D L+D SLL ++ ++M +++ +A I S S G
Sbjct: 433 ADELVDNTNVFRDARDKGHAILDALIDVSLLERSDEKKCVKMNKVLRKMALKISSQSNGS 492
Query: 1311 RCFLSTAEGFQFLSRAYSRLAELPNAGTSSLRSPERSRLFIPEAYQFLLGARAGLTEPPS 1370
+ FL+ GL + P
Sbjct: 493 K---------------------------------------------FLVKPCEGLQDFPD 507
Query: 1371 EEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLS 1430
+EW A I M N L TLP C NL TL LQ N L IP FFE M SL+VL+L
Sbjct: 508 RKEWEDASRISLMGNQLCTLPEFLHCHNLSTLLLQMNNGLIAIPEFFFESMRSLRVLDLH 567
Query: 1431 KTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGK 1490
T I+SLP ++ L CL+ L L C L LPP + +LE LEVLD+RGT++ +L +IG
Sbjct: 568 GTGIESLPSSISYLICLRGLYLNSCPHLIQLPPNMRALEQLEVLDIRGTKLNLL--QIGS 625
Query: 1491 LTSLRYLTV----FFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKD 1546
L L+ L + FF G I+ L S +S +LE +D ++ WD+
Sbjct: 626 LIWLKCLRISLSSFFRG-------IRTQRQLGS---ISAFVSLEEFCVDDDLSEQCWDEF 675
Query: 1547 VKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGS-AWNNQQLTEFKFVVGH--DVKSIVS 1603
+ IV+ EV L KL+SL F FP ++ + F++ S W F+F VG+ + S +
Sbjct: 676 LMIVMEEVVTLKKLTSLRFCFPTVDFLKLFVQRSPVWKKNSCFTFQFCVGYQGNTYSQIL 735
Query: 1604 WVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSG 1663
+DY YN CL+ VNG+ + P + ++L + AF + +H + +LSDFGV M
Sbjct: 736 ESSDYP--SYN----CLKLVNGEGMHPVIAEVLRMTHAFKLINHKGVSTLSDFGVNNMEN 789
Query: 1664 LKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILS 1723
+ C + C +I+T+V ++V +LE L +N + L IWQG +P GS A+L L+
Sbjct: 790 MLVCSVEGCNEIRTIVCGDRMASSVLENLEVLNINSVLKLRSIWQGSIPNGSLAQLTTLT 849
Query: 1724 IHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHH 1783
+ C L+ +F+ MIQ L +L+ L VE C ++ II++ E LP LK L L
Sbjct: 850 LTKCPELKKIFSNGMIQQLPELQHLRVEECNRIEEIIMESENLELEVNALPRLKTLVLID 909
Query: 1784 LPELANIWRND---WPSLEYISFYGCPKLKKMGMDSKLKETLIWIKAEKKWWAELEWED 1839
LP L +IW +D WPSL+ I C LK++ + L I+ ++ WW L WED
Sbjct: 910 LPRLRSIWIDDSLEWPSLQRIQIATCHMLKRLPFSNTNALKLRLIEGQQSWWEALVWED 968
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|317106744|dbj|BAJ53239.1| JHS03A10.2 [Jatropha curcas] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 259/619 (41%), Positives = 359/619 (57%), Gaps = 85/619 (13%)
Query: 16 YDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPESLLGTIEASTISIII 75
YDVFLSFRGEDTRD+FTSHLY+ALC ++TFIDN+L RG EI SLL IE S IS+ I
Sbjct: 10 YDVFLSFRGEDTRDSFTSHLYAALCDKKIQTFIDNNLVRGKEISSSLLKAIEESKISVPI 69
Query: 76 FSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQIGSFGDSFFMLEERFP 135
SE YASSKWCL+EL +I++C + GQIVIPVFYR+ PS VR Q GSF D+F E+
Sbjct: 70 LSENYASSKWCLEELAEIIKCMKKNGQIVIPVFYRIRPSDVRNQTGSFHDAFARYEKSLM 129
Query: 136 Y---KMRNWRSALTEAADLSGFDSCVIRPESRLVADIANEVLERLDDTFQSESKDLIGVE 192
K++ WR+AL E A LSG+DS IRPES L+ ++ ++L++L+ F S S LIG++
Sbjct: 130 VNKDKVQRWRAALKEVAGLSGWDSMAIRPESTLIHEVLKDILKKLNRIFPSYSSGLIGID 189
Query: 193 WRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEET 252
RIK IE+L+ S+ +GIWG+GG GKTT+A A +++IS FE SYF + R +
Sbjct: 190 SRIKHIEALISMESSAARTVGIWGMGGSGKTTLARATYDRISYQFERSYFLSDFRKQGKN 249
Query: 253 GRLDDLRKELLSKLLNDRNVK--NFQNISVNFQSKRLARKKVLIVFDDVNHPRQI-ELLI 309
L LR L + +LN++++K N ++ R+ R KVL+V DDV+ Q+ +LL
Sbjct: 250 S-LFQLRDSLFTFILNEKDLKMRNLDLCLTDYIQDRIRRTKVLLVVDDVDSSAQLNQLLA 308
Query: 310 GRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYT 369
F S S +++T+R++QVL N VD IY M EL +A +LF+ AF+ + + +
Sbjct: 309 TEYSLFGSRSVILVTSRNRQVLKNV-VDVIYPMMELNEHEALRLFSLNAFKQAYPSSDHM 367
Query: 370 ELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIVPHMEIQEVLKISYDSLDD 429
E + + + Y +G PLALKVLG L RS+E W SA+++LE +P EI VL++SYD LD
Sbjct: 368 EKSKRVIAYTKGNPLALKVLGSLLFDRSEEYWCSALKRLENIPKPEIHNVLRVSYDVLDS 427
Query: 430 SQKRM--------------------------------------------------HDLLR 439
++R+ HDLL+
Sbjct: 428 EEQRIFLDVACFFTGKNLDDIITILDGYFSSVYLTIKTLIDRCLITVSWDKRLEVHDLLQ 487
Query: 440 AMGREIVRKESIVDPGKRSRLWHDEDIYEVLKKNTGTEAIKDISLNMSDNEKEIFAR--T 497
MGR+IV ESI P RSRLW+ EDI +L +N GTEAI+ I L++S +EI R
Sbjct: 488 EMGRKIVNDESI-RPENRSRLWNPEDIRHILLENKGTEAIEGICLDLS-KAREICLRRDA 545
Query: 498 FSTMTNLGHLKAYESREIKDVMSDLE----------------------VVPFPEVY-AKN 534
F+ M NL +LK YES++I ++ V P + A+N
Sbjct: 546 FAGMHNLRYLKFYESKDIAHGGGKMQPYDGGLRFLPTALRYLHWYGCPVKTLPAYFGAEN 605
Query: 535 LVSLKMWDGKVKERWDDVQ 553
LV L+M + +VK+ W VQ
Sbjct: 606 LVVLEMPESRVKKLWTGVQ 624
|
Source: Jatropha curcas Species: Jatropha curcas Genus: Jatropha Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255555357|ref|XP_002518715.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223542096|gb|EEF43640.1| leucine-rich repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 428 bits (1100), Expect = e-116, Method: Compositional matrix adjust.
Identities = 265/633 (41%), Positives = 365/633 (57%), Gaps = 94/633 (14%)
Query: 13 KKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPESLLGTIEASTIS 72
++ YDVFLSFRGEDTR NFTSHL++AL + TFID+DL+RG+EI SLL IE S IS
Sbjct: 20 QEKYDVFLSFRGEDTRYNFTSHLHAALNGKKIPTFIDDDLERGNEISPSLLKAIEESKIS 79
Query: 73 IIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQIGSFGDSFFMLEE 132
++I S+ Y SSKWCL+EL+KILEC +N GQ+VIPVFYRVDPSHVR Q GSF D F EE
Sbjct: 80 VVIISQDYPSSKWCLEELVKILECMKNRGQMVIPVFYRVDPSHVRNQTGSFEDVFARHEE 139
Query: 133 RFPY---KMRNWRSALTEAADLSGFDSCVIRPESRLVADIANEVLERLDD-TFQSESKDL 188
K+++WR+AL E A+LSG+ S RPE+ V +I ++++L+ + S+ L
Sbjct: 140 SLSVSKEKVQSWRAALKEVANLSGWHSTSTRPEAEAVKEIIEVIVKKLNQMSPNCYSRGL 199
Query: 189 IGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRA 248
+G+E RI+EIESLL S+ V +GIWG+GG+GKTT+A A++++I+ FE YF N R
Sbjct: 200 VGMESRIQEIESLLCLRSSNVRIVGIWGMGGLGKTTLARAIYDRIAPQFEICYFLSNARE 259
Query: 249 AEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPRQIE-- 306
+ L +L+ +L S LL +++ N Q +F RL RKKVLIV DD + Q++
Sbjct: 260 QLQRCTLSELQNQLFSTLLEEQSTLNLQR---SFIKDRLCRKKVLIVIDDADDSTQLQEL 316
Query: 307 LLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDA 366
LL D F SGS++IIT+RDKQVL N D IY M++L +A +LF+ AF+ D+
Sbjct: 317 LLESEPDYFGSGSRIIITSRDKQVLRNIARDKIYAMQKLKKHEALQLFSLKAFKQDNPTC 376
Query: 367 GYTEL-AHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIVPHMEIQEVLKISYD 425
+ L A + +KYA+G PLAL VLG L G+ +++W+SA+ +LE P+ +I +VL+ISYD
Sbjct: 377 RHCRLQAERVVKYAKGNPLALTVLGSALFGKREKDWKSALERLERNPNKKIDDVLRISYD 436
Query: 426 SLDDSQKR---------------------------------------------------M 434
LD ++ +
Sbjct: 437 GLDSEERSIFLDIACFFRGQDRDFVTKTLDGYYGSAHSVISTLIDRSVIMLSSDSSKLDL 496
Query: 435 HDLLRAMGREIVRKESIVDPGKRSRLWHDEDIYEVLKKNTGTEAIKDISLNMSDNEKEIF 494
HDLL+ MGR+IV +ES +P RSRLW ED+ VL +N GTEAI+ ISL+ S EI
Sbjct: 497 HDLLQEMGRKIVFEES-KNPENRSRLWTPEDVCYVLNENRGTEAIEGISLDKSKATSEIR 555
Query: 495 AR--TFSTMTNLGHLKAYES----------REIKDVMS----DLEVVPF----------- 527
+ FS M L LK Y+S R KD + L+ +P
Sbjct: 556 LKPDAFSRMCRLRFLKFYKSPGDFYRSPGDRHSKDKLQISRDGLQSLPNELRHLYWIDFP 615
Query: 528 -----PEVYAKNLVSLKMWDGKVKERWDDVQKV 555
P +NLV L + + KVK+ W Q +
Sbjct: 616 MKSLPPSFNPENLVVLHLRNSKVKKLWTGTQNL 648
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1866 | ||||||
| TAIR|locus:2175991 | 1294 | AT5G17680 [Arabidopsis thalian | 0.227 | 0.328 | 0.360 | 5.8e-84 | |
| UNIPROTKB|Q40392 | 1144 | N "TMV resistance protein N" [ | 0.228 | 0.372 | 0.386 | 2e-81 | |
| TAIR|locus:2151516 | 858 | AT5G46490 [Arabidopsis thalian | 0.227 | 0.494 | 0.350 | 1.2e-80 | |
| TAIR|locus:2161513 | 780 | AT5G17970 [Arabidopsis thalian | 0.229 | 0.55 | 0.328 | 4.8e-80 | |
| TAIR|locus:2136108 | 1095 | AT4G11170 [Arabidopsis thalian | 0.226 | 0.385 | 0.376 | 2.3e-79 | |
| TAIR|locus:2118106 | 1219 | AT4G12010 [Arabidopsis thalian | 0.226 | 0.346 | 0.384 | 1.5e-78 | |
| TAIR|locus:2167457 | 1191 | AT5G36930 [Arabidopsis thalian | 0.221 | 0.346 | 0.379 | 1.6e-78 | |
| TAIR|locus:2146243 | 900 | AT5G18360 [Arabidopsis thalian | 0.227 | 0.472 | 0.343 | 1.6e-77 | |
| TAIR|locus:2115870 | 1234 | AT4G08450 [Arabidopsis thalian | 0.224 | 0.338 | 0.382 | 9.2e-77 | |
| TAIR|locus:2170408 | 1139 | AT5G46270 [Arabidopsis thalian | 0.226 | 0.371 | 0.368 | 1.6e-75 |
| TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 688 (247.2 bits), Expect = 5.8e-84, Sum P(4) = 5.8e-84
Identities = 157/435 (36%), Positives = 249/435 (57%)
Query: 1 MASSSSSPPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDN-DLKRGDEIP 59
+ SSSSS K DVF+SFRGED R F SHL+ + ++ F D+ DL+RG I
Sbjct: 4 LPSSSSSSSSTVWKT-DVFVSFRGEDVRKTFVSHLFCEFDRMGIKAFRDDLDLQRGKSIS 62
Query: 60 ESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQ 119
L+ I+ S +I++ S YA+S WCLDELLKI+EC ++ ++P+FY VDPS VR+Q
Sbjct: 63 PELIDAIKGSRFAIVVVSRNYAASSWCLDELLKIMECNKD---TIVPIFYEVDPSDVRRQ 119
Query: 120 IGSFGDSFFMLEERFPYKMRNWRSALTEAADLSGFDSCVIRPESRLVADIANEVLERLDD 179
GSFG+ ++ K+ W+ AL + A +SG DS +S+L+ I ++ ++L
Sbjct: 120 RGSFGEDVESHSDK--EKVGKWKEALKKLAAISGEDSRNW-DDSKLIKKIVKDISDKLVS 176
Query: 180 TFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLXXXXXXXXXXXXXXXXVFNKISRHFEG 239
T +SK LIG+ + ++S++ V L ++N++S F+
Sbjct: 177 TSWDDSKGLIGMSSHMDFLQSMISIVDKDVRMLGIWGMGGVGKTTIAKYLYNQLSGQFQV 236
Query: 240 SYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISV-NFQSKRLARKKVLIVFDD 298
F NV+ + L+ E L ++ +R+ + + ++S N +R K V IV DD
Sbjct: 237 HCFMENVKEVCNRYGVRRLQVEFLCRMFQERDKEAWSSVSCCNIIKERFRHKMVFIVLDD 296
Query: 299 VNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHADAHKLFTQCA 358
V+ Q+ L+ F GS++I+TTRD+ +L + ++ +Y++K L +A +LF A
Sbjct: 297 VDRSEQLNELVKETGWFGPGSRIIVTTRDRHLLLSHGINLVYKVKCLPKKEALQLFCNYA 356
Query: 359 FRGDH-LDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIVPHMEIQ 417
FR + L G+ EL+ +A+ YA G+PLAL+VLG +L RS+ EWES + +L+ PH +I
Sbjct: 357 FREEIILPHGFEELSVQAVNYASGLPLALRVLGSFLYRRSQIEWESTLARLKTYPHSDIM 416
Query: 418 EVLKISYDSLDDSQK 432
EVL++SYD LD+ +K
Sbjct: 417 EVLRVSYDGLDEQEK 431
|
|
| UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)] | Back alignment and assigned GO terms |
|---|
Score = 701 (251.8 bits), Expect = 2.0e-81, Sum P(4) = 2.0e-81
Identities = 172/445 (38%), Positives = 256/445 (57%)
Query: 1 MASSSSSPPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDND-LKRGDEIP 59
MASSSSS + YDVFLSFRGEDTR FTSHLY L ++TF D+ L+ G IP
Sbjct: 1 MASSSSS----SRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIP 56
Query: 60 ESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQ 119
L IE S +I++FSE YA+S+WCL+EL+KI+ECK + Q VIP+FY VDPSHVR Q
Sbjct: 57 GELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQ 116
Query: 120 IGSFGDSFFMLEERFPYKM---RNWRSALTEAADLSGFDSCVIRP--ESRLVADIANEVL 174
SF +F E ++ + + WR AL EAA+L G SC R ++ + I +++
Sbjct: 117 KESFAKAFEEHETKYKDDVEGIQRWRIALNEAANLKG--SCDNRDKTDADCIRQIVDQIS 174
Query: 175 ERLDDTFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLXXXXXXXXXXXXXXXXVFNKIS 234
+L S ++++G++ +++IESLL G GV + +F+ +
Sbjct: 175 SKLCKISLSYLQNIVGIDTHLEKIESLLEIGINGVRIMGIWGMGGVGKTTIARAIFDTLL 234
Query: 235 RHFEGSY-F--ACNVRAAEETGR-LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARK 290
+ SY F AC ++ +E R + L+ LLS+LL ++ N + + + RL K
Sbjct: 235 GRMDSSYQFDGACFLKDIKENKRGMHSLQNALLSELLREKANYNNEEDGKHQMASRLRSK 294
Query: 291 KVLIVFDDV-NHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHAD 349
KVLIV DD+ N +E L G LD F +GS++IITTRDK ++ ++ IY++ L +
Sbjct: 295 KVLIVLDDIDNKDHYLEYLAGDLDWFGNGSRIIITTRDKHLIEKNDI--IYEVTALPDHE 352
Query: 350 AHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLE 409
+ +LF Q AF + + + +L+ + + YA+G+PLALKV G L EW+SA+ ++
Sbjct: 353 SIQLFKQHAFGKEVPNENFEKLSLEVVNYAKGLPLALKVWGSLLHNLRLTEWKSAIEHMK 412
Query: 410 IVPHMEIQEVLKISYDSLDDSQKRM 434
+ I + LKISYD L+ Q+ M
Sbjct: 413 NNSYSGIIDKLKISYDGLEPKQQEM 437
|
|
| TAIR|locus:2151516 AT5G46490 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 638 (229.6 bits), Expect = 1.2e-80, Sum P(4) = 1.2e-80
Identities = 157/448 (35%), Positives = 244/448 (54%)
Query: 1 MASSSSSPPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPE 60
MASSSSS RN +YDVFLSFRG D R F SH + + F DN+++R +
Sbjct: 1 MASSSSS--RN--WLYDVFLSFRGGDVRVTFRSHFLKEFDRKLITAFRDNEIERSHSLWP 56
Query: 61 SLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQI 120
L I+ S I++++FS+ YASS WCL+ELL+I+ C +I+IPVFY VDPS VR QI
Sbjct: 57 DLEQAIKDSRIAVVVFSKNYASSSWCLNELLEIVNCN---DKIIIPVFYGVDPSQVRYQI 113
Query: 121 GSFGDSFFMLEERFPYKMRN-WRSALTEAADLSGFDSCVIRPESRLVADIANEVLERLDD 179
G FG F +R +++N W+ ALT A++ GFDS E++++ +IAN+VL +L
Sbjct: 114 GDFGRIFEKTCKRQTEEVKNQWKKALTLVANMLGFDSAKWDDEAKMIEEIANDVLRKLLL 173
Query: 180 TFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLXXXXXXXXXXXXXXXXVFNKISRHFE- 238
T + D +G+E I + +LL S V + +FN + RHF+
Sbjct: 174 TTSKDFDDFVGLEDHIANMSALLDLESKEVKMVGIWGSSGIGKTTIARALFNNLFRHFQV 233
Query: 239 ----GSYFACNVRAAEETGRLDD------LRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288
FA R + DD L++ LS++L N+K ++ +RL
Sbjct: 234 RKFIDRSFAYKSREIHSSANPDDHNMKLHLQESFLSEILRMPNIKIDDPTALE---ERLK 290
Query: 289 RKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHA 348
+KVLI+ DD++ ++ L+G+ F GS++I+ T DK LT +DHIY++
Sbjct: 291 YQKVLIIIDDLDDIMVLDTLVGQTQWFGYGSRIIVVTNDKHFLTAHGIDHIYEVSFPTDV 350
Query: 349 DAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKL 408
A ++ Q AF+ ++ G+ +L +++A PL L +LG YL GR++E W + +L
Sbjct: 351 HACQMLCQSAFKQNYAPEGFGDLVVDVVRHACSFPLGLNLLGKYLRGRNEEYWMDILPRL 410
Query: 409 EIVPHME--IQEVLKISYDSLDDSQKRM 434
E ++ I+++L+ISYD LD + +
Sbjct: 411 ENGLRLDGKIEKILRISYDGLDSEDQEI 438
|
|
| TAIR|locus:2161513 AT5G17970 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 613 (220.8 bits), Expect = 4.8e-80, Sum P(3) = 4.8e-80
Identities = 146/444 (32%), Positives = 239/444 (53%)
Query: 1 MASSSSSPPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPE 60
MAS SSS +D+ Y VF SF GED R NF SHL+ L N ++ F D +KR I
Sbjct: 1 MASVSSSSSFSDRHSYHVFPSFCGEDVRRNFLSHLHKELQHNGIDAFKDGGIKRSRSIWP 60
Query: 61 SLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQI 120
L I S I I++ S+ YA S WCLDEL++I+EC+ G+ ++P+FY VDPS VRKQ
Sbjct: 61 ELKQAIWESKIFIVVLSKNYAGSCWCLDELVEIMECREVVGKTLVPIFYDVDPSSVRKQT 120
Query: 121 GSFGDSFFML-EERFPYKMRNWRSALTEAADLSGFDSCVIRPESRLVADIANEVLERLDD 179
G FG +F + + R + + WR ALT +++G S +++++ I V E L
Sbjct: 121 GDFGKAFDKICDVRTEEERQRWRQALTNVGNIAGECSSKWDNDAKMIEKIVAYVSEELFC 180
Query: 180 -TFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLXXXXXXXXXXXXXXXXVFNKISRHFE 238
T ++ +DL+G+E + ++S+L S V + ++N++S +
Sbjct: 181 FTSSTDFEDLLGLEAHVANLKSMLGLESNEVKMIGVWGPAGIGKTTITRILYNQLSSSND 240
Query: 239 GSY----FACNVRAAEETGRLDD------LRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288
+ F NV+ + +D LR+ LS++ R +K ++ V +RL
Sbjct: 241 DDFQLFIFMENVKGSYRRKEIDGYSMKLHLRERFLSEITTQRKIK-VSHLGV--AQERLK 297
Query: 289 RKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHA 348
+K LIV DDV+ Q+ L + +G+++++TT D+Q+L + H+Y++
Sbjct: 298 NQKALIVLDDVDELEQLRALADQTQWVGNGTRILVTTEDRQLLKAHGITHVYEVDYPSRD 357
Query: 349 DAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKL 408
+A K+ QCAF + GY +LA + ++ A +PL L VLG L G SK+EW +A+ +L
Sbjct: 358 EALKILCQCAFGKNSAPEGYNDLAVEVVELAGYLPLGLSVLGASLRGMSKKEWINALPRL 417
Query: 409 EIVPHMEIQEVLKISYDSLDDSQK 432
+ +I+++L++ Y+ LD+ K
Sbjct: 418 RTSLNGKIEKLLRVCYEGLDEKDK 441
|
|
| TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 686 (246.5 bits), Expect = 2.3e-79, Sum P(3) = 2.3e-79
Identities = 166/441 (37%), Positives = 251/441 (56%)
Query: 1 MASSSSSPPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPE 60
MASSSS+ R YDVF SFRGED R+NF SHL + TF D+ +KR I
Sbjct: 1 MASSSSNSWR-----YDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGH 55
Query: 61 SLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQI 120
L I S IS+++FSE YASS WCLDEL++I++CK G V+PVFY+VDPS +RKQ
Sbjct: 56 ELRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQT 115
Query: 121 GSFGDSFFMLEE---RFPYKMRNWRSALTEAADLSGFDSCVIRPESRLVADIANEVLERL 177
G FG SF LE + + NWR ALT+AA++ G E+ + I+ +VLE+L
Sbjct: 116 GKFGMSF--LETCCGKTEERQHNWRRALTDAANILGDHPQNWDNEAYKITTISKDVLEKL 173
Query: 178 DDTFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLXXXXXXXXXXXXXXXXVFNKISRHF 237
+ T + DL+G+E I ++ESLL S GV + ++N+ +F
Sbjct: 174 NATPSRDFNDLVGMEAHIAKMESLLCLESQGVRIVGIWGPAGVGKTTIARALYNQYHENF 233
Query: 238 EGSYFACNVRAAEETGRLDD------LRKELLSKLLNDRNVKNFQNISVNFQSKRLARKK 291
S F NVR + LDD L++ LSKLL+ ++++ +++ +RL +K
Sbjct: 234 NLSIFMENVRESYGEAGLDDYGLKLHLQQRFLSKLLDQKDLR-VRHLGAI--EERLKSQK 290
Query: 292 VLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHADAH 351
VLI+ DDV++ Q++ L F + S++++TT++KQ+L + +++H+YQ+ +A
Sbjct: 291 VLIILDDVDNIEQLKALAKENQWFGNKSRIVVTTQNKQLLVSHDINHMYQVAYPSKQEAL 350
Query: 352 KLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIV 411
+F Q AF+ LA + A +PLAL+VLG ++ G+ KEEWE ++ L+
Sbjct: 351 TIFCQHAFKQSSPSDDLKHLAIEFTTLAGHLPLALRVLGSFMRGKGKEEWEFSLPTLKSR 410
Query: 412 PHMEIQEVLKISYDSLDDSQK 432
E+++VLK+ YD L D +K
Sbjct: 411 LDGEVEKVLKVGYDGLHDHEK 431
|
|
| TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 1.5e-78, Sum P(5) = 1.5e-78
Identities = 169/440 (38%), Positives = 256/440 (58%)
Query: 5 SSSPPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPESLLG 64
SSSP + +DVFLSFRG DTR+NFT HL AL +++FID+ L+RGD + +L
Sbjct: 3 SSSPSSAE---FDVFLSFRGFDTRNNFTGHLQKALRLRGIDSFIDDRLRRGDNLT-ALFD 58
Query: 65 TIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQIGSFG 124
IE S I+II+FS YA+S WCL EL+KILEC+ + Q+V+P+FY+VD S V KQ SF
Sbjct: 59 RIEKSKIAIIVFSTNYANSAWCLRELVKILECRNSNQQLVVPIFYKVDKSDVEKQRNSFA 118
Query: 125 DSFFMLEERFP----YKMRNWRSALTEAADLSGFDSCVIRP-ESRLVADIANEVLERLDD 179
F + E FP ++ +W++AL A+++ G+ I E++LV +IA + ++L+D
Sbjct: 119 VPFKLPELTFPGVTPEEISSWKAALASASNILGYVVKEISTSEAKLVDEIAVDTFKKLND 178
Query: 180 TFQSESKDLIGVEWRIKEIESLLRTGSAG-VYKLXXXXXXXXXXXXXXXXVFNKISRHFE 238
S ++ L+G+E R+K +E LL V+ + ++ ++ F+
Sbjct: 179 LAPSGNEGLVGIESRLKNLEKLLSWEDLDTVHIIGIVGMVGIGKTTLADCLYGRMRGQFD 238
Query: 239 GSYFACNVRAAEETGR--LDDLRKELLSKLLNDRNVKNFQ--NISVNFQSKRLARKKVLI 294
GS F N+R E +GR L+ L ++L S +LNDR+++ N F+ +RL K++LI
Sbjct: 239 GSCFLTNIR--ENSGRSGLESLLQKLFSTVLNDRDLEIGAPGNAHERFE-RRLKSKRLLI 295
Query: 295 VFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHADAHKLF 354
V DDVN +QI L+G + GS++IITTRD +++ + Y + +L +A KLF
Sbjct: 296 VLDDVNDEKQIRYLMGHCKWYQGGSRIIITTRDSKLIETIK-GRKYVLPKLNDREALKLF 354
Query: 355 TQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIVPHM 414
+ AF + L + L YA+G PLALKVLG LC R WE+ + +L+ H
Sbjct: 355 SLNAFSNSFPLKEFEGLTNMVLDYAKGHPLALKVLGSDLCERDDLYWEAKLDRLKSRSHG 414
Query: 415 EIQEVLKISYDSLDDSQKRM 434
+I EVL+ SY+ L QK +
Sbjct: 415 DIYEVLETSYEELTTEQKNV 434
|
|
| TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 669 (240.6 bits), Expect = 1.6e-78, Sum P(3) = 1.6e-78
Identities = 160/422 (37%), Positives = 239/422 (56%)
Query: 16 YDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDN-DLKRGDEIPESLLGTIEASTISII 74
YDVF+SFRG D R NF SHLY +L + + TF+D+ +L+RG+ I LL IE S I I+
Sbjct: 17 YDVFVSFRGADVRKNFLSHLYDSLRRCGISTFMDDVELQRGEYISPELLNAIETSKILIV 76
Query: 75 IFSEKYASSKWCLDELLKILEC-KRNYGQIVIPVFYRVDPSHVRKQIGSFGDSFFMLEER 133
+ ++ YASS WCLDEL+ I++ K N +V P+F VDPS +R Q GS+ SF +
Sbjct: 77 VLTKDYASSAWCLDELVHIMKSHKNNPSHMVFPIFLYVDPSDIRWQQGSYAKSFSKHKNS 136
Query: 134 FPY-KMRNWRSALTEAADLSGFDSCVIRPESRLVADIANEVLERLDDTFQSESKDLIGVE 192
P K+++WR ALT+ A++SG+D R E+ +ADI E+L+RL + +G+
Sbjct: 137 HPLNKLKDWREALTKVANISGWD-IKNRNEAECIADITREILKRLPCQYLHVPSYAVGLR 195
Query: 193 WRIKEIESLLRTGSAGVYKLXXXXXXXXXXXXXXXXVFNKISRHFEGSYFACNVR--AAE 250
R++ I SLL GS GV + FN+ S FEGS F N R + +
Sbjct: 196 SRLQHISSLLSIGSDGVRVIVIYGMGGIGKTTLAKVAFNEFSHLFEGSSFLENFREYSKK 255
Query: 251 ETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPRQIELLIG 310
GR L+ +LLS +L RN F+ + + +R K+VL+V DDV+ Q+
Sbjct: 256 PEGRTH-LQHQLLSDILR-RNDIEFKGLD-HAVKERFRSKRVLLVVDDVDDVHQLNSAAI 312
Query: 311 RLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTE 370
D F GS++IITTR+ +L + Y KEL ++ +LF+ AFR + +
Sbjct: 313 DRDCFGHGSRIIITTRNMHLLKQLRAEGSYSPKELDGDESLELFSWHAFRTSEPPKEFLQ 372
Query: 371 LAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIVPHMEIQEVLKISYDSLDDS 430
+ + + Y G+PLA++VLG +L RS EWES ++ L+ +P+ IQ L+IS+++L
Sbjct: 373 HSEEVVTYCAGLPLAVEVLGAFLIERSIREWESTLKLLKRIPNDNIQAKLQISFNALTIE 432
Query: 431 QK 432
QK
Sbjct: 433 QK 434
|
|
| TAIR|locus:2146243 AT5G18360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 1.6e-77, Sum P(3) = 1.6e-77
Identities = 151/440 (34%), Positives = 241/440 (54%)
Query: 1 MASSSSSPPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPE 60
M SSS ++ + VF SF G+D R F SHL + + TFIDND+KR I
Sbjct: 1 MEESSSLSLQSCNWRHHVFPSFSGKDVRRTFLSHLLKEFRRKGIRTFIDNDIKRSQMISS 60
Query: 61 SLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQI 120
L+ I S I++++ S YASS WCL+EL++I + Q+++PVFY VDPS VRK+
Sbjct: 61 ELVRAIRESRIAVVVLSRTYASSSWCLNELVEI----KKVSQMIMPVFYEVDPSDVRKRT 116
Query: 121 GSFGDSFFMLEERFPYK--MRNWRSALTEAADLSGFDSCVIRPESRLVADIANEVLERLD 178
G FG +F ER P + + WR AL A+++G S E+ L+ IA + L+
Sbjct: 117 GEFGKAFEEACERQPDEEVKQKWREALVYIANIAGESSQNWDNEADLIDKIAMSISYELN 176
Query: 179 DTFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLXXXXXXXXXXXXXXXXVFNKISRHFE 238
T +S +L+G++ ++E++SLL S V + +FN++S +F+
Sbjct: 177 STLSRDSYNLVGIDNHMRELDSLLCLESTEVKMVGIWGPAGIGKTTIARALFNRLSENFQ 236
Query: 239 GSYFACNVRAAEETGRLDD------LRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKV 292
+ F NV+ + T LD L+++ LS++++ +++K + +RL KV
Sbjct: 237 HTIFMENVKGSSRTSELDAYGFQLRLQEQFLSEVIDHKHMKIHD---LGLVKERLQDLKV 293
Query: 293 LIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHADAHK 352
L+V DDV+ Q++ L+ + F SGS++I+TT +KQ+L + IY++ +D+ +
Sbjct: 294 LVVLDDVDKLEQLDALVKQSQWFGSGSRIIVTTENKQLLRAHGITCIYELGFPSRSDSLQ 353
Query: 353 LFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIVP 412
+F Q AF G ELA + K A +PLALKVLG L G SK+E +SA+ +L
Sbjct: 354 IFCQYAFGESSAPDGCIELATEITKLAGYLPLALKVLGSSLRGMSKDEQKSALPRLRTSL 413
Query: 413 HMEIQEVLKISYDSLDDSQK 432
+ +I+ VL++ YD + D K
Sbjct: 414 NEDIRNVLRVGYDGIHDKDK 433
|
|
| TAIR|locus:2115870 AT4G08450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 667 (239.9 bits), Expect = 9.2e-77, Sum P(3) = 9.2e-77
Identities = 171/447 (38%), Positives = 252/447 (56%)
Query: 1 MASSSSSPPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPE 60
MASSSS +YDVF SF GED R F +H L + + F DN+++RG+ I
Sbjct: 1 MASSSSH-----NWVYDVFTSFSGEDIRVTFLTHFLKELDRKMIIAFKDNEIERGNSIGT 55
Query: 61 SLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQI 120
L+ I+ S I++++FS+KY+SS WCL+EL++I+ CK +IVIPVFY +DPS VRKQ
Sbjct: 56 ELIQAIKDSRIAVVVFSKKYSSSSWCLNELVEIVNCK----EIVIPVFYDLDPSDVRKQE 111
Query: 121 GSFGDSFF-MLEERFPYKMRNWRSALTEAADLSGFDSCVIRPESRLVADIANEVLERLDD 179
G FG+SF + R Y+++ W ALT A+++G+ + E++L+ +I N+VL++L
Sbjct: 112 GEFGESFKETCKNRTDYEIQRWGQALTNVANIAGYHTRKPNNEAKLIEEITNDVLDKLMK 171
Query: 180 TFQSESKD-LIGVEWRIKEIESLLRTGSAGVYKLXXXXXXXXXXXXXXXXVFNKISRHFE 238
S+ D G+E IKE+ LL S V + +FN+I RHF+
Sbjct: 172 LTPSKDFDEFFGIEDHIKELSLLLCLESEEVRMVGIWGPTGIGKTTIARALFNRIYRHFQ 231
Query: 239 GSYF----------ACNVRAAEETGRLD-DLRKELLSKLLNDRNVKNFQNISVNFQSKRL 287
G F A RA + L L+++LLSKLL D+ KN + ++ +RL
Sbjct: 232 GRVFIDRAFISKSMAIYSRANSDDYNLKLHLQEKLLSKLL-DK--KNLEINHLDAVKERL 288
Query: 288 ARKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVH 347
+ KVLI DD++ +E L + F GS++I+ T+DK +L +DHIY++ L
Sbjct: 289 RQMKVLIFIDDLDDQVVLEALACQTQWFGHGSRIIVITKDKHLLRAYGIDHIYEVL-LPS 347
Query: 348 AD-AHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMR 406
D A K+F + AFR D G+ ELA+ +K A +PL L +LG YL GRSKE+W M
Sbjct: 348 KDLAIKMFCRSAFRKDSPPNGFIELAYDVVKRAGSLPLGLNILGSYLRGRSKEDWIDMMP 407
Query: 407 KLEIVPHMEIQEVLKISYDSL--DDSQ 431
L +IQ+ L++SYD L +D Q
Sbjct: 408 GLRNKLDGKIQKTLRVSYDGLASEDDQ 434
|
|
| TAIR|locus:2170408 AT5G46270 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 660 (237.4 bits), Expect = 1.6e-75, Sum P(5) = 1.6e-75
Identities = 164/445 (36%), Positives = 248/445 (55%)
Query: 1 MASSSSSPPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPE 60
MASSSSS RN +YDVFLSFRG D R F SH L + + F DN+++R +
Sbjct: 12 MASSSSS--RN--WLYDVFLSFRGGDVRVTFRSHFLKELDRKLITAFRDNEIERSHSLWP 67
Query: 61 SLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQI 120
L I+ S I+++IFS+ YASS WCL+ELL+I+ C +IVIPVFY VDPS VR QI
Sbjct: 68 DLEQAIKDSRIAVVIFSKNYASSSWCLNELLEIVNCN---DKIVIPVFYGVDPSQVRHQI 124
Query: 121 GSFGDSFFMLEERFPYKMRN-WRSALTEAADLSGFDSCVIRPESRLVADIANEVLERLDD 179
G FG F +R +++N W+ ALT+ A++ GFDS E++++ +IAN+VL +L
Sbjct: 125 GDFGKIFEKTCKRQTEQVKNQWKKALTDVANMLGFDSATWDDEAKMIEEIANDVLAKLLL 184
Query: 180 TFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLXXXXXXXXXXXXXXXXVFNKISRHFEG 239
T + ++ +G+E I + LL+ + V + +FN++SRHF
Sbjct: 185 TTPKDFENFVGIEDHIANMSVLLKLEAEEVRMVGIWGSSGIGKTTIARALFNQLSRHFPV 244
Query: 240 SYF---ACNVRAAEETGRL--DD------LRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288
S F A ++ E R DD L+++LLS++L ++K ++ V +RL
Sbjct: 245 SKFIDRAFVYKSREIFSRANPDDHNMKLHLQEKLLSEILRMPDIK-IDHLGV--LGERLQ 301
Query: 289 RKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHA 348
+KVLI+ DD++ ++ L+G+ F SGS++I T +K L E+DHIY++
Sbjct: 302 HQKVLIIVDDLDDQVILDSLVGQTQWFGSGSRIIAVTNNKHFLRAHEIDHIYEVSLPTQQ 361
Query: 349 DAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKL 408
A + Q AFR G+ L + ++ +PL L VLG YL GR KE W + +L
Sbjct: 362 HALAMLCQSAFRKKSPPEGFEMLVVQVARHVDSLPLGLNVLGSYLRGRDKEYWMEMLPRL 421
Query: 409 EIVPHMEIQEVLKISYDSLDDSQKR 433
E H +I+++L+ISYD L + +
Sbjct: 422 ENGLHDKIEKILRISYDGLGSEEDK 446
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1866 | |||
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 1e-100 | |
| pfam00931 | 285 | pfam00931, NB-ARC, NB-ARC domain | 7e-51 | |
| pfam01582 | 135 | pfam01582, TIR, TIR domain | 3e-36 | |
| smart00255 | 140 | smart00255, TIR, Toll - interleukin 1 - resistance | 2e-34 | |
| pfam00931 | 285 | pfam00931, NB-ARC, NB-ARC domain | 2e-24 | |
| PLN03194 | 187 | PLN03194, PLN03194, putative disease resistance pr | 2e-13 | |
| pfam00931 | 285 | pfam00931, NB-ARC, NB-ARC domain | 6e-13 | |
| pfam13676 | 102 | pfam13676, TIR_2, TIR domain | 4e-09 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 4e-08 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 8e-07 | |
| pfam13401 | 124 | pfam13401, AAA_22, AAA domain | 6e-05 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-04 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-04 | |
| pfam01637 | 223 | pfam01637, Arch_ATPase, Archaeal ATPase | 8e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.001 | |
| pfam13191 | 154 | pfam13191, AAA_16, AAA ATPase domain | 0.002 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 0.003 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 350 bits (900), Expect = e-100
Identities = 211/637 (33%), Positives = 333/637 (52%), Gaps = 91/637 (14%)
Query: 2 ASSSSSPPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPES 61
+SSSS RN +YDVF SF GED R F SH L + + F DN+++R +
Sbjct: 1 MASSSSSSRN--WVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPE 58
Query: 62 LLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQIG 121
L I S I++++FS+ YASS WCL+ELL+I+ CK GQ+VIPVFY +DPSHVRKQ G
Sbjct: 59 LKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTG 118
Query: 122 SFGDSFFMLEERFPYKMRN-WRSALTEAADLSGFDSCVIRPESRLVADIANEVLERLDDT 180
FG++F + + W+ ALT+ A++ G+ S E++++ +IAN+VL +L+ T
Sbjct: 119 DFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLT 178
Query: 181 FQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGS 240
++ +D +G+E I ++ SLL S V +GIWG GIGKTTIA A+F+++SR F+ S
Sbjct: 179 PSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSS 238
Query: 241 YFACNVRAAE-----ETGRLDD------LRKELLSKLLNDRNVKNFQNISVNFQSKRLAR 289
F ++ + DD L++ LS++L+ +++K + + +RL
Sbjct: 239 VFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH---LGAMEERLKH 295
Query: 290 KKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHAD 349
+KVLI DD++ ++ L G+ F SGS++I+ T+DK L +DHIY++ +
Sbjct: 296 RKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNEL 355
Query: 350 AHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLE 409
A ++F + AF+ + G+ ELA + A +PL L VLG YL GR KE+W + +L
Sbjct: 356 ALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLR 415
Query: 410 IVPHMEIQEVLKISYDSLDDSQKR------------------------------------ 433
+I++ L++SYD L++ + +
Sbjct: 416 NGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNL 475
Query: 434 --------------MHDLLRAMGREIVRKESIVDPGKRSRLWHDEDIYEVLKKNTGTEAI 479
MH LL+ MG+EIVR +S +PG+R L +DI +VL+ NTGT+ +
Sbjct: 476 VDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKV 534
Query: 480 KDISLNMSD-NEKEIFARTFSTMTNLGHLKAYESR--EIKDVM-----------SDLEVV 525
I+L++ + +E I F M NL LK Y + + K+V L ++
Sbjct: 535 LGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLL 594
Query: 526 PF---------PEVYAKNLVSLKMWDGKVKERWDDVQ 553
+ +NLV L+M K+++ WD V
Sbjct: 595 RWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVH 631
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 7e-51
Identities = 83/261 (31%), Positives = 143/261 (54%), Gaps = 7/261 (2%)
Query: 1002 IGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDR 1061
+G+ G+GG+GKT K + + V F + WV VS+ + ++QK +L++L L D
Sbjct: 22 VGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFRLQKDILQELGLDDSDW 81
Query: 1062 --ETDAQVAEKLWQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVC 1119
+ ++++A K+ + L ++FLL+LDDVWE+ D + +G+P P ENGS++ + +R V
Sbjct: 82 VEKNESELAVKIKEALLRKRFLLVLDDVWEKNDWDKIGVPFPDGENGSRVIVTTRSESVA 141
Query: 1120 RNMDV-NMVVKLETLSMKDAWELFCKEVG--GIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176
M + ++E+L +++WELF +V + P++ A+ IV+ C GLPL V
Sbjct: 142 GRMGGTSKPHEVESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLPLALKVL 201
Query: 1177 AKALAGERNVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCSLF 1236
LA + V W+H + + +++ +L S+D L H +K CFL+ +LF
Sbjct: 202 GGLLAFKSTVQEWEHVLEQLN-NELAGRDGLNEVLSILSLSYDNLPMH-LKRCFLYLALF 259
Query: 1237 PEDREVSIVEFIDYCIQEGII 1257
PED + + I I EG +
Sbjct: 260 PEDYNIRKEQLIKLWIAEGFV 280
|
Length = 285 |
| >gnl|CDD|216585 pfam01582, TIR, TIR domain | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 3e-36
Identities = 58/135 (42%), Positives = 82/135 (60%), Gaps = 6/135 (4%)
Query: 18 VFLSFRGEDTRDNFTSHLYSALCQNNVETFIDN-DLKRGDEIPESLLGTIEASTISIIIF 76
VF+SF G+D RD F SHL L + ++ ID+ D G+ I E+L IE S +I+IF
Sbjct: 1 VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60
Query: 77 SEKYASSKWCLDELLKILECK--RNYGQIVIPVFYRVDPSHVRKQIGSFGDSFF---MLE 131
S YASS+WCLDEL++I++C ++++P+FY+VDPS VR Q G FG +F
Sbjct: 61 SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWS 120
Query: 132 ERFPYKMRNWRSALT 146
K+R W+ AL
Sbjct: 121 GDKEDKIRFWKKALY 135
|
The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135 |
| >gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 2e-34
Identities = 57/141 (40%), Positives = 74/141 (52%), Gaps = 5/141 (3%)
Query: 15 MYDVFLSFRG-EDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPESLLGTIEASTISI 73
YDVF+S+ G ED R+ F SHL L + FID+ G E + IE S I+I
Sbjct: 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGG-GDLEEIDEAIEKSRIAI 59
Query: 74 IIFSEKYASSKWCLDELLKILECKRNYGQI-VIPVFYRVDPSHVRKQIGSFGDSFFMLEE 132
++ S YA S+WCLDEL+ LE G + VIP+FY V PS VRKQ G F F
Sbjct: 60 VVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYL 119
Query: 133 RFP--YKMRNWRSALTEAADL 151
++P K + W+ AL
Sbjct: 120 KWPEDEKEQFWKKALYAVPSK 140
|
Length = 140 |
| >gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 67/235 (28%), Positives = 113/235 (48%), Gaps = 18/235 (7%)
Query: 212 LGIWGIGGIGKTTIAGAVFNK--ISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLND 269
+GI G+GG+GKTT+A ++N + HF+ + + E L+K++L +L D
Sbjct: 22 VGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEF----RLQKDILQELGLD 77
Query: 270 RNVKNFQNISVNFQSK---RLARKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTR 326
+ +N S K L RK+ L+V DDV + + +GS+VI+TTR
Sbjct: 78 DSDWVEKNESE-LAVKIKEALLRKRFLLVLDDVWEKNDWDKIGVPFPDGENGSRVIVTTR 136
Query: 327 DKQVLTNCEVDH-IYQMKELVHADAHKLFTQCAFRG-DHLDAGYTELAHKALKYAQGVPL 384
+ V ++++ L ++ +LF+ F E+A + ++ +G+PL
Sbjct: 137 SESVAGRMGGTSKPHEVESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLPL 196
Query: 385 ALKVLGCYLCGRSK-EEWESAMRKL---EIVPHM--EIQEVLKISYDSLDDSQKR 433
ALKVLG L +S +EWE + +L E+ +L +SYD+L KR
Sbjct: 197 ALKVLGGLLAFKSTVQEWEHVLEQLNNELAGRDGLNEVLSILSLSYDNLPMHLKR 251
|
Length = 285 |
| >gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 2e-13
Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 19/171 (11%)
Query: 11 NDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDN-DLKRGDEIPESLLGTIEAS 69
+ K DVF++ RG DT+ + LY L + N+ F+DN ++K GD++ + + I
Sbjct: 22 SSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNC 81
Query: 70 TISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVR-KQIGSFGDSFF 128
+ + +FS +Y S +CL EL I+E K+ VIP+F V PS +R G+
Sbjct: 82 KVGVAVFSPRYCESYFCLHELALIMESKKR----VIPIFCDVKPSQLRVVDNGT------ 131
Query: 129 MLEERFPYKMRNWRSALTEAADLSG--FDSCVIRPESRLVADIANEVLERL 177
++R + AL EA G FDS + S +V ++ V++ L
Sbjct: 132 ----CPDEEIRRFNWALEEAKYTVGLTFDS-LKGNWSEVVTMASDAVIKNL 177
|
Length = 187 |
| >gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 6e-13
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 15/158 (9%)
Query: 695 INKVNYELLRDVNMVRILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLS 754
I + +LL + + ++ I GM G G+T LA+++Y++ V HF W VSK
Sbjct: 5 IEALIEKLLEMSDNLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEF 64
Query: 755 TVLNAIAVQF------------SEIRRAENMADLSERLLVVLDDVCDIDDEELHNFRLLI 802
+ I + SE+ A L +R L+VLDDV + + +
Sbjct: 65 RLQKDILQELGLDDSDWVEKNESELAVKIKEALLRKRFLLVLDDV--WEKNDWDKIGVPF 122
Query: 803 SNMRDSGSCFLVTTHSHRVATMMSSVSEGQLISLLKLD 840
+ ++GS +VTT S VA M S+ + L+ +
Sbjct: 123 PD-GENGSRVIVTTRSESVAGRMGGTSKPHEVESLEPE 159
|
Length = 285 |
| >gnl|CDD|222311 pfam13676, TIR_2, TIR domain | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 4e-09
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 18 VFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPESLLGTIEASTISIIIFS 77
VF+S+ D + L AL + ++D D+ G++ + + + ++ + +++ S
Sbjct: 1 VFISYASADRE--WAEWLADALEAAGIRVWLDWDIPPGEDWRDEIEEALRSADVVLVLLS 58
Query: 78 EKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPS 114
Y +S WC E LE + +IPV R++
Sbjct: 59 PAYLASPWCRAEWGAALERGKR----LIPV--RLEDC 89
|
This is a family of bacterial Toll-like receptors. Length = 102 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 4e-08
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 1398 NLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRDCD 1456
NL +L L N RL VIP F+ + +LKVL+LS + S+ PE L L+ L L +
Sbjct: 1 NLKSLDLSNN-RLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
Query: 1457 F 1457
Sbjct: 60 L 60
|
Length = 60 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 8e-07
Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 18/161 (11%)
Query: 1413 IPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLE 1472
IPP L ++LK L+LS +I+SLP L NL L+ L L D L LP + +L L
Sbjct: 131 IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN 189
Query: 1473 VLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALE-- 1530
LDL G +I LP EI L++L L + + I+L L L L LE
Sbjct: 190 NLDLSGNKISDLPPEIELLSALEEL------DLSNNSIIELLSSL---SNLKNLSGLELS 240
Query: 1531 ----TLSIDVHPGDKRWDK-DV-KIVITEVSGLTKLSSLSF 1565
+ + D+ I+ +S L L++L
Sbjct: 241 NNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRE 281
|
Length = 394 |
| >gnl|CDD|222104 pfam13401, AAA_22, AAA domain | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 1004 VYGVGGIGKTAALKALI-SYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRE 1062
+ G G GKT L+ L P +V ++V + + +++LR L L
Sbjct: 9 LTGESGSGKTTLLRRLARQLPNRRV-----VYVEAPSLGTPKDLLRKILRALGLPLSGGT 63
Query: 1063 TDAQVAEKLWQVLNGEKFLLLLDDV 1087
T + L + + LL++D+
Sbjct: 64 TAELLEAILDALKRRGRPLLIIDEA 88
|
Length = 124 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 4e-04
Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 1398 NLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIK-SLPETLVNLKCLQILILRDCD 1456
NL LFL +N IPPS F L L L+LS + +PE ++ L+ L+IL L +
Sbjct: 261 NLQYLFLYQNKLSGPIPPSIFSL-QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319
Query: 1457 FLFVLPPEVGSLECLEVLDLRGTEIK-MLPKEIGK---LTSLRYLTVFFFGSMYKSEYIK 1512
F +P + SL L+VL L + +PK +GK LT L T G +
Sbjct: 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG--------E 371
Query: 1513 LPPDLISSDILSRL 1526
+P L SS L +L
Sbjct: 372 IPEGLCSSGNLFKL 385
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 5e-04
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 1397 PNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIK-SLPETLVNLKCLQILILRDC 1455
P + T+ L N IP F +SL+ LNLS S+P ++ L+ L L +
Sbjct: 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--SIPNLETLDLSNN 150
Query: 1456 DFLFVLPPEVGSLECLEVLDLRGTEIK-MLPKEIGKLTSLRYLTV 1499
+P ++GS L+VLDL G + +P + LTSL +LT+
Sbjct: 151 MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195
|
Length = 968 |
| >gnl|CDD|216619 pfam01637, Arch_ATPase, Archaeal ATPase | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 8e-04
Identities = 23/116 (19%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 192 EWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTT-IAGAVFNKISRHFEGSYFAC------ 244
E +KE+E G+ + ++G GKT + + + Y+
Sbjct: 5 EKELKELEEWAERGTYPIIV--VYGPRRCGKTALLREFLEELRELGYRVIYYDPLRREFE 62
Query: 245 -NVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDV 299
+ EE RL + + L K+ ++ F ++++ F+ + KK+ I+ D+V
Sbjct: 63 EKLDRFEEAKRLAEALGDALPKIGIAKSKLAFLSLTLLFELLKRKGKKIAIIIDEV 118
|
This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family. Length = 223 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.001
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 1376 HAKMIFFMDNDLQTLPGRP--SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTR 1433
+ K + +N L +P PNL L L N L I P F + SL+ L+LS
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNN-LTSISPEAFSGLPSLRSLDLSGNN 59
Query: 1434 I 1434
+
Sbjct: 60 L 60
|
Length = 60 |
| >gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 26/153 (16%), Positives = 57/153 (37%), Gaps = 17/153 (11%)
Query: 188 LIGVEWRIKEIESLLRTGSAGVYKLG-IWGIGGIGKTTIAGAVFNKISRHFEGSYFACNV 246
L+G E ++ + LR +G + G G GKT++ + + A
Sbjct: 2 LVGREEELERLLDALRRARSGGPPSVLLTGPSGTGKTSLLRELLEGLLVAAGKCDQAERN 61
Query: 247 RAAEETGRLDDLRKELLSKL--------------LNDRNVKNFQNISVNFQSKRLARKKV 292
+ L +L ++LL +L L ++ Q++ + + +
Sbjct: 62 PPYAFSQALRELLRQLLRELAAELLLLREALLAALGAELIEGLQDLVELLERLLARARPL 121
Query: 293 LIVFDDVNHPRQ--IELLIGRLDRFASGSQVII 323
++V DD+ + ++LL L R +++
Sbjct: 122 VLVLDDLQWADEESLDLLAALLRRLERLPLLVV 154
|
This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 154 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.003
Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 22/160 (13%)
Query: 1393 RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLS-KTRIKSLPETLVNLKCLQILI 1451
R S PNL TL L N IP +SLKVL+L + +P +L NL L+ L
Sbjct: 136 RGSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194
Query: 1452 LRDCDFLFVLPPEVGSLECLEVL-----DLRGTEIKMLPKEIGKLTSLRYLTVFF----- 1501
L + +P E+G ++ L+ + +L G EI P EIG LTSL +L + +
Sbjct: 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSG-EI---PYEIGGLTSLNHLDLVYNNLTG 250
Query: 1502 -----FGSMYKSEYIKLPPDLISSDILSRLQALETL-SID 1535
G++ +Y+ L + +S I + +L+ L S+D
Sbjct: 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290
|
Length = 968 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1866 | |||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 100.0 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 100.0 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 100.0 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 100.0 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 100.0 | |
| PLN03194 | 187 | putative disease resistance protein; Provisional | 100.0 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.84 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.84 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.75 | |
| PF01582 | 141 | TIR: TIR domain; InterPro: IPR000157 In Drosophila | 99.75 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.75 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.71 | |
| smart00255 | 140 | TIR Toll - interleukin 1 - resistance. | 99.7 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.63 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.59 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.56 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.5 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.43 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.41 | |
| PF13676 | 102 | TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_ | 99.36 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.33 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.1 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.08 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.08 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.96 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.92 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 98.85 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.83 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 98.8 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.73 | |
| PF05729 | 166 | NACHT: NACHT domain | 98.73 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.71 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.69 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 98.68 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 98.64 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 98.62 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.6 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 98.58 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 98.56 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 98.53 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 98.51 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 98.51 | |
| PF05729 | 166 | NACHT: NACHT domain | 98.49 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.47 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 98.44 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 98.42 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 98.37 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 98.36 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.35 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 98.32 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.31 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 98.28 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.27 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.27 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 98.27 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 98.21 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 98.18 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 98.17 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.16 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.16 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 98.16 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 98.15 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.14 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 98.13 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.13 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 98.12 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 98.12 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.1 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 98.1 | |
| PF07725 | 20 | LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Le | 98.09 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 98.08 | |
| COG3903 | 414 | Predicted ATPase [General function prediction only | 98.08 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 98.07 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 98.07 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 98.06 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 98.06 | |
| PF13173 | 128 | AAA_14: AAA domain | 98.05 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 98.04 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 98.02 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 98.01 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 98.01 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.0 | |
| PTZ00202 | 550 | tuzin; Provisional | 97.99 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 97.99 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 97.99 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 97.99 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 97.98 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 97.98 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.97 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 97.97 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 97.97 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.95 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 97.95 | |
| PRK08727 | 233 | hypothetical protein; Validated | 97.94 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 97.93 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.93 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 97.93 | |
| PF13173 | 128 | AAA_14: AAA domain | 97.92 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 97.92 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 97.92 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 97.91 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 97.89 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 97.89 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 97.88 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.85 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 97.84 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 97.84 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 97.84 | |
| COG3899 | 849 | Predicted ATPase [General function prediction only | 97.82 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 97.81 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 97.8 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 97.79 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.79 | |
| PRK09376 | 416 | rho transcription termination factor Rho; Provisio | 97.79 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 97.78 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 97.78 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 97.77 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 97.76 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 97.75 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.74 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 97.74 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 97.73 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 97.71 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 97.7 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 97.69 | |
| PRK09087 | 226 | hypothetical protein; Validated | 97.69 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 97.68 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.66 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 97.65 | |
| PRK09376 | 416 | rho transcription termination factor Rho; Provisio | 97.65 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 97.64 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 97.63 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 97.63 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 97.63 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 97.62 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 97.58 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 97.58 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 97.57 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 97.57 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 97.56 | |
| PRK09087 | 226 | hypothetical protein; Validated | 97.56 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 97.56 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.55 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 97.55 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 97.54 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 97.54 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 97.54 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.54 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 97.52 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 97.52 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.52 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 97.51 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 97.5 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 97.5 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 97.48 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 97.48 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 97.47 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 97.46 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 97.46 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 97.44 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 97.43 | |
| COG3903 | 414 | Predicted ATPase [General function prediction only | 97.42 | |
| PRK08727 | 233 | hypothetical protein; Validated | 97.41 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 97.41 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 97.4 | |
| PF08937 | 130 | DUF1863: MTH538 TIR-like domain (DUF1863); InterPr | 97.39 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 97.39 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 97.39 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 97.38 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 97.37 | |
| PRK06620 | 214 | hypothetical protein; Validated | 97.36 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 97.36 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 97.36 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 97.36 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 97.34 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.34 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 97.33 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 97.33 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 97.32 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 97.32 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.32 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 97.3 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 97.3 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 97.29 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 97.28 | |
| PTZ00202 | 550 | tuzin; Provisional | 97.26 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 97.25 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 97.25 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 97.25 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 97.23 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 97.23 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 97.22 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 97.21 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 97.21 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 97.17 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 97.16 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 97.15 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.15 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.14 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 97.11 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 97.1 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.1 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.09 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 97.07 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 97.07 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 97.06 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 97.03 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 97.02 | |
| PF14516 | 331 | AAA_35: AAA-like domain | 97.01 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 97.0 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 97.0 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 96.99 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 96.99 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 96.99 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 96.98 | |
| COG3899 | 849 | Predicted ATPase [General function prediction only | 96.98 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 96.97 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 96.97 | |
| PRK08116 | 268 | hypothetical protein; Validated | 96.97 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 96.96 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 96.95 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 96.95 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 96.94 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 96.94 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.91 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 96.9 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 96.9 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 96.88 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 96.87 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 96.87 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 96.86 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 96.84 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 96.82 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 96.8 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 96.8 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 96.8 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 96.78 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 96.78 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 96.76 | |
| KOG2227 | 529 | consensus Pre-initiation complex, subunit CDC6, AA | 96.76 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 96.75 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 96.74 | |
| cd01133 | 274 | F1-ATPase_beta F1 ATP synthase beta subunit, nucle | 96.73 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 96.72 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 96.72 | |
| COG1373 | 398 | Predicted ATPase (AAA+ superfamily) [General funct | 96.7 | |
| KOG2543 | 438 | consensus Origin recognition complex, subunit 5 [R | 96.68 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 96.67 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 96.64 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 96.6 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 96.58 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 96.58 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 96.58 | |
| COG1373 | 398 | Predicted ATPase (AAA+ superfamily) [General funct | 96.58 | |
| PRK08181 | 269 | transposase; Validated | 96.56 | |
| PRK12377 | 248 | putative replication protein; Provisional | 96.56 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 96.55 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 96.55 | |
| PRK06620 | 214 | hypothetical protein; Validated | 96.54 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 96.54 | |
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 96.52 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 96.52 | |
| KOG0731 | 774 | consensus AAA+-type ATPase containing the peptidas | 96.52 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 96.51 | |
| KOG2227 | 529 | consensus Pre-initiation complex, subunit CDC6, AA | 96.5 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 96.5 | |
| KOG2543 | 438 | consensus Origin recognition complex, subunit 5 [R | 96.49 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 96.48 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 96.47 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 96.46 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 96.46 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 96.46 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 96.45 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 96.42 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 96.42 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 96.42 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 96.4 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 96.4 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 96.39 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 96.39 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 96.38 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 96.38 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 96.38 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 96.37 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 96.37 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 96.36 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 96.35 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 96.34 | |
| PF08357 | 150 | SEFIR: SEFIR domain; InterPro: IPR013568 This doma | 96.33 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 96.32 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 96.31 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 96.3 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 96.28 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 96.28 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 96.28 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 96.27 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 96.27 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 96.25 | |
| KOG0744 | 423 | consensus AAA+-type ATPase [Posttranslational modi | 96.25 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 96.24 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 96.23 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 96.22 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 96.21 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 96.2 | |
| PRK06526 | 254 | transposase; Provisional | 96.18 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 96.14 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 96.13 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 96.12 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 96.09 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 96.08 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 96.07 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 96.05 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 96.03 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 96.03 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 96.03 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 96.01 | |
| KOG0728 | 404 | consensus 26S proteasome regulatory complex, ATPas | 96.0 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 95.98 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 95.96 | |
| PRK12608 | 380 | transcription termination factor Rho; Provisional | 95.95 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 95.93 | |
| PF14516 | 331 | AAA_35: AAA-like domain | 95.92 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 95.92 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 95.9 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 95.88 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 95.88 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.86 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 95.84 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 95.83 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.77 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 95.77 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 95.72 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 95.72 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 95.68 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 95.64 | |
| COG3267 | 269 | ExeA Type II secretory pathway, component ExeA (pr | 95.63 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 95.62 | |
| cd01394 | 218 | radB RadB. The archaeal protein radB shares simila | 95.61 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 95.61 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 95.59 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 95.56 | |
| PRK09361 | 225 | radB DNA repair and recombination protein RadB; Pr | 95.55 | |
| KOG0729 | 435 | consensus 26S proteasome regulatory complex, ATPas | 95.55 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 95.54 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 95.53 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 95.53 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 95.49 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 95.48 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 95.46 | |
| COG3267 | 269 | ExeA Type II secretory pathway, component ExeA (pr | 95.45 | |
| KOG0734 | 752 | consensus AAA+-type ATPase containing the peptidas | 95.44 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 95.43 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 95.4 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 95.37 | |
| KOG2228 | 408 | consensus Origin recognition complex, subunit 4 [R | 95.36 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 95.35 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 95.32 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 95.3 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 95.26 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 95.24 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 95.22 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 95.18 | |
| PF10443 | 431 | RNA12: RNA12 protein; InterPro: IPR018850 Mitochon | 95.16 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 95.15 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 95.14 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 95.12 | |
| PRK12608 | 380 | transcription termination factor Rho; Provisional | 95.11 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 95.1 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 95.09 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 95.08 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 95.06 | |
| COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General funct | 95.04 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 95.03 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 95.0 | |
| PF14532 | 138 | Sigma54_activ_2: Sigma-54 interaction domain; PDB: | 95.0 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.0 | |
| KOG0727 | 408 | consensus 26S proteasome regulatory complex, ATPas | 94.99 | |
| TIGR02902 | 531 | spore_lonB ATP-dependent protease LonB. Members of | 94.96 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 94.94 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 94.93 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 94.9 | |
| COG1066 | 456 | Sms Predicted ATP-dependent serine protease [Postt | 94.9 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 94.9 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 94.88 | |
| PRK05541 | 176 | adenylylsulfate kinase; Provisional | 94.87 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 94.86 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 94.85 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 94.84 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 94.84 | |
| PRK08116 | 268 | hypothetical protein; Validated | 94.82 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 94.81 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 94.75 | |
| PRK06696 | 223 | uridine kinase; Validated | 94.73 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 94.71 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 94.71 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 94.56 | |
| PRK07667 | 193 | uridine kinase; Provisional | 94.48 | |
| PRK08181 | 269 | transposase; Validated | 94.48 | |
| PRK11608 | 326 | pspF phage shock protein operon transcriptional ac | 94.46 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 94.45 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 94.43 | |
| KOG0726 | 440 | consensus 26S proteasome regulatory complex, ATPas | 94.39 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 94.39 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 94.36 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 94.28 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 94.28 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 94.28 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 94.28 | |
| KOG0731 | 774 | consensus AAA+-type ATPase containing the peptidas | 94.21 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 94.2 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 94.2 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 94.15 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 94.02 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 93.98 | |
| KOG2004 | 906 | consensus Mitochondrial ATP-dependent protease PIM | 93.95 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 93.94 | |
| KOG2035 | 351 | consensus Replication factor C, subunit RFC3 [Cell | 93.9 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 93.88 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 93.88 | |
| PRK09361 | 225 | radB DNA repair and recombination protein RadB; Pr | 93.85 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 93.83 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 93.8 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 93.78 | |
| KOG0651 | 388 | consensus 26S proteasome regulatory complex, ATPas | 93.77 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 93.76 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 93.75 | |
| cd00544 | 169 | CobU Adenosylcobinamide kinase / adenosylcobinamid | 93.73 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 93.72 | |
| TIGR01359 | 183 | UMP_CMP_kin_fam UMP-CMP kinase family. This subfam | 93.72 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 93.64 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 93.62 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 93.62 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 93.61 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 93.59 | |
| PF01583 | 156 | APS_kinase: Adenylylsulphate kinase; InterPro: IPR | 93.57 | |
| PRK06217 | 183 | hypothetical protein; Validated | 93.5 | |
| PF07726 | 131 | AAA_3: ATPase family associated with various cellu | 93.49 | |
| cd00983 | 325 | recA RecA is a bacterial enzyme which has roles in | 93.47 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 93.42 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 93.42 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 93.4 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 93.39 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 93.39 | |
| PRK09280 | 463 | F0F1 ATP synthase subunit beta; Validated | 93.36 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 93.35 | |
| PRK12377 | 248 | putative replication protein; Provisional | 93.34 | |
| COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational | 93.32 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 93.29 | |
| TIGR02012 | 321 | tigrfam_recA protein RecA. This model describes or | 93.29 | |
| PRK06526 | 254 | transposase; Provisional | 93.27 | |
| cd01133 | 274 | F1-ATPase_beta F1 ATP synthase beta subunit, nucle | 93.26 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 93.22 | |
| PRK05541 | 176 | adenylylsulfate kinase; Provisional | 93.22 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 93.21 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 93.2 | |
| TIGR02974 | 329 | phageshock_pspF psp operon transcriptional activat | 93.11 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 93.11 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 93.09 | |
| PF00485 | 194 | PRK: Phosphoribulokinase / Uridine kinase family; | 93.08 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 93.01 | |
| cd01394 | 218 | radB RadB. The archaeal protein radB shares simila | 92.94 | |
| PRK05800 | 170 | cobU adenosylcobinamide kinase/adenosylcobinamide- | 92.93 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 92.93 | |
| PRK09354 | 349 | recA recombinase A; Provisional | 92.91 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 92.88 | |
| PRK12597 | 461 | F0F1 ATP synthase subunit beta; Provisional | 92.87 | |
| TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem | 92.84 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 92.83 | |
| PRK15455 | 644 | PrkA family serine protein kinase; Provisional | 92.83 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 92.81 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 92.78 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 92.76 | |
| TIGR01039 | 461 | atpD ATP synthase, F1 beta subunit. The sequences | 92.75 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 92.74 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 92.72 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 92.68 | |
| PRK12678 | 672 | transcription termination factor Rho; Provisional | 92.63 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 92.61 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 92.57 | |
| PF10443 | 431 | RNA12: RNA12 protein; InterPro: IPR018850 Mitochon | 92.57 | |
| PRK03839 | 180 | putative kinase; Provisional | 92.47 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 92.46 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 92.44 | |
| COG0572 | 218 | Udk Uridine kinase [Nucleotide transport and metab | 92.43 | |
| KOG0734 | 752 | consensus AAA+-type ATPase containing the peptidas | 92.42 | |
| PTZ00301 | 210 | uridine kinase; Provisional | 92.42 | |
| PF08423 | 256 | Rad51: Rad51; InterPro: IPR013632 This domain is f | 92.38 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 92.37 | |
| PF10236 | 309 | DAP3: Mitochondrial ribosomal death-associated pro | 92.37 | |
| PRK00625 | 173 | shikimate kinase; Provisional | 92.36 | |
| KOG0652 | 424 | consensus 26S proteasome regulatory complex, ATPas | 92.34 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 92.29 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 92.28 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 92.26 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 92.25 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 92.25 | |
| CHL00206 | 2281 | ycf2 Ycf2; Provisional | 92.25 | |
| KOG1514 | 767 | consensus Origin recognition complex, subunit 1, a | 92.23 | |
| PRK04040 | 188 | adenylate kinase; Provisional | 92.23 |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-88 Score=936.75 Aligned_cols=554 Identities=38% Similarity=0.639 Sum_probs=502.2
Q ss_pred CCCCCCCCCCCCCCCccEEEccccccccCchHHHHHHHHhhCCCceEeeCCCCCCCCCchhHHHHhhhcceEEEEeccCc
Q 000202 1 MASSSSSPPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPESLLGTIEASTISIIIFSEKY 80 (1866)
Q Consensus 1 m~~~~~~~~~~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y 80 (1866)
|||||||+ +.++||||+||||+|+|++|++||+++|+++||.+|+|+++++|+.|.+++.+||++||++|||||++|
T Consensus 1 ~~~~~~~~---~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~y 77 (1153)
T PLN03210 1 MASSSSSS---RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNY 77 (1153)
T ss_pred CCCCCCCC---CCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCc
Confidence 67666554 569999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHhhCCCEEEEEEEEecCCcccccccchhhhHHHHhhcc-hhhhhhHHHHHHhhhccCCCccccc
Q 000202 81 ASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQIGSFGDSFFMLEERF-PYKMRNWRSALTEAADLSGFDSCVI 159 (1866)
Q Consensus 81 ~~s~~c~~El~~~~~~~~~~~~~v~pvf~~v~p~~vr~~~g~~~~~~~~~~~~~-~~~~~~wr~al~~~a~~~g~~~~~~ 159 (1866)
|+|+||++||++|++|+++.+++|+||||+|+|+|||+|+|.||+||.+|+.+. .+++++||+||++||+++||++..+
T Consensus 78 a~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~ 157 (1153)
T PLN03210 78 ASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNW 157 (1153)
T ss_pred ccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCC
Confidence 999999999999999999999999999999999999999999999999998764 4789999999999999999999888
Q ss_pred CccchhhhhhHHHHhhcccccccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccc
Q 000202 160 RPESRLVADIANEVLERLDDTFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEG 239 (1866)
Q Consensus 160 ~~e~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~ 239 (1866)
..|+++|++||++|.+++...++...+++|||+.+++++.++|..+.+++++|+||||||+||||||+++|+++..+|++
T Consensus 158 ~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g 237 (1153)
T PLN03210 158 PNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQS 237 (1153)
T ss_pred CCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCe
Confidence 88999999999999999998888888999999999999999998888889999999999999999999999999999999
Q ss_pred eEEEEee--cccc---c------cccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCHHHHHHH
Q 000202 240 SYFACNV--RAAE---E------TGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPRQIELL 308 (1866)
Q Consensus 240 ~~~~~~~--~~~~---~------~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l 308 (1866)
.+|+... .... . ......++++++.++...... ... ....++++++++|+||||||||+.++|+.+
T Consensus 238 ~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~-~~~--~~~~~~~~L~~krvLLVLDdv~~~~~l~~L 314 (1153)
T PLN03210 238 SVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI-KIY--HLGAMEERLKHRKVLIFIDDLDDQDVLDAL 314 (1153)
T ss_pred EEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc-ccC--CHHHHHHHHhCCeEEEEEeCCCCHHHHHHH
Confidence 9998642 1100 0 001234566777776654431 111 225678889999999999999999999999
Q ss_pred hhccCCCCCCCEEEEEccccchhccCccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeee
Q 000202 309 IGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKV 388 (1866)
Q Consensus 309 ~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~ 388 (1866)
.....|+++||+||||||+++++..++..++|+|+.|+.+||++||+++||++..+++++.+++++|+++|+|+||||++
T Consensus 315 ~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~v 394 (1153)
T PLN03210 315 AGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNV 394 (1153)
T ss_pred HhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99888999999999999999999887788999999999999999999999998878888999999999999999999999
Q ss_pred ecccccCCCHHHHHHHHHHhccCCCchhhhhhhcccCCCChh-hH-----------------------------------
Q 000202 389 LGCYLCGRSKEEWESAMRKLEIVPHMEIQEVLKISYDSLDDS-QK----------------------------------- 432 (1866)
Q Consensus 389 ~g~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~-~k----------------------------------- 432 (1866)
+|++|++++..+|+.++++++...+.+|.++|++||++|+++ +|
T Consensus 395 lgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~ 474 (1153)
T PLN03210 395 LGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKN 474 (1153)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHH
Confidence 999999999999999999999888889999999999999764 55
Q ss_pred --------------HHHHHHHHHhHHhhcccCCCCCCCeeeecchhHHHHHhhcCcccceEEEEEeecC-CCcccccccc
Q 000202 433 --------------RMHDLLRAMGREIVRKESIVDPGKRSRLWHDEDIYEVLKKNTGTEAIKDISLNMS-DNEKEIFART 497 (1866)
Q Consensus 433 --------------~~~~~l~~~~~~i~~~~~~~~~~~~~rlW~~e~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~~~~~ 497 (1866)
.||+++++||++|+++++ ..|+++.|+|.++++.+++.+++|++.+++|++|++ .....+...+
T Consensus 475 L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~a 553 (1153)
T PLN03210 475 LVDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENA 553 (1153)
T ss_pred HHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHH
Confidence 899999999999999987 689999999999999999999999999999999998 6678899999
Q ss_pred cCCcccccceeecc--------------------CCCceeee---cCCCCCCCCCCCCCCeeEEEcCCCCCcccCCCccc
Q 000202 498 FSTMTNLGHLKAYE--------------------SREIKDVM---SDLEVVPFPEVYAKNLVSLKMWDGKVKERWDDVQK 554 (1866)
Q Consensus 498 f~~m~~l~~l~~~~--------------------~~~l~~l~---~~~~~lp~~~f~~~~l~~l~l~~s~~~~lw~~~~~ 554 (1866)
|.+|.+|++|++|. |.+||+|+ ||++++| ++|.+++|++|+|++|+|+++|++.+.
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP-~~f~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMP-SNFRPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCC-CcCCccCCcEEECcCcccccccccccc
Confidence 99999999999853 56799999 9999999 999999999999999999999999998
Q ss_pred Cccchhhcc
Q 000202 555 VDVECDRLD 563 (1866)
Q Consensus 555 l~~~~~~l~ 563 (1866)
+.. +..++
T Consensus 633 l~~-Lk~L~ 640 (1153)
T PLN03210 633 LTG-LRNID 640 (1153)
T ss_pred CCC-CCEEE
Confidence 876 34444
|
syringae 6; Provisional |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-74 Score=749.62 Aligned_cols=475 Identities=33% Similarity=0.582 Sum_probs=404.3
Q ss_pred chhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcc-cccccceEEEEEecCCCCHHHHHHHHHHHhccCCC
Q 000202 981 NYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPE-VKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCK 1059 (1866)
Q Consensus 981 ~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 1059 (1866)
+|.+..++++++.|.+++..+|+|+||||+||||||++++|... ++.+|+.++||+||+.|+...++++|++.++....
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 46778999999999777779999999999999999999999888 99999999999999999999999999999987443
Q ss_pred C--ccCHHHHHHHHHHHhCCCcEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhhcc-CCCCcEEEecCCChH
Q 000202 1060 D--RETDAQVAEKLWQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVCRN-MDVNMVVKLETLSMK 1136 (1866)
Q Consensus 1060 ~--~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~-~~~~~~~~l~~L~~~ 1136 (1866)
. ....++.+..+.+.|++|||||||||||+..+|+.++.++|...+||+|++|||++.||.. |++...+++++|+.+
T Consensus 241 ~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~ 320 (889)
T KOG4658|consen 241 EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPE 320 (889)
T ss_pred ccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCcc
Confidence 2 2234688899999999999999999999999999999999999899999999999999999 888899999999999
Q ss_pred HHHHHHHHHhcCC--CCCchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHhhhCCCCccccc-cchhhHHHH
Q 000202 1137 DAWELFCKEVGGI--IQSPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHASRKFSLPITIEE-CCTEDLIEL 1213 (1866)
Q Consensus 1137 ~a~~Lf~~~~~~~--~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~i~~~ 1213 (1866)
|||+||++.|+.. ..++.++++|++|+++|+|+|||++++|+.|+.+++..+|+++.+.+......+. ...+.|+++
T Consensus 321 eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~i 400 (889)
T KOG4658|consen 321 EAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPI 400 (889)
T ss_pred ccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHh
Confidence 9999999999876 3456799999999999999999999999999999999999999998765432222 345689999
Q ss_pred HHHhHhccCCcchhHHHHhhcCCCCCccccHHHHHHHHHHcCccchhh--HhHHHhHHHHHHHHHHhhhhhccc---ccC
Q 000202 1214 LKFSFDQLKDHDVKSCFLHCSLFPEDREVSIVEFIDYCIQEGIIVGTL--ANAHKRGHQIVDVLVDASLLLINE---VHN 1288 (1866)
Q Consensus 1214 l~~Sy~~L~~~~lk~cfly~s~Fp~~~~i~~~~Li~~W~aeG~i~~~~--~~~~~~~~~~~~~L~~~sll~~~~---~~~ 1288 (1866)
|++||+.||++ +|.||+|||+||+||.|+++.||.+|+||||+.+.. ..+++.|+.|+.+|++++|++..+ ...
T Consensus 401 LklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~ 479 (889)
T KOG4658|consen 401 LKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKE 479 (889)
T ss_pred hhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccccccee
Confidence 99999999965 999999999999999999999999999999998743 358999999999999999999765 347
Q ss_pred cccchhHHHHHHHHHhhcCCCC-ceeeccccchhhHHHhhhhhccCCCCCCCCCCCcccccccchhhHHHHhcccCCCCC
Q 000202 1289 SIRMPGLMKDLAFGILSSSTGD-RCFLSTAEGFQFLSRAYSRLAELPNAGTSSLRSPERSRLFIPEAYQFLLGARAGLTE 1367 (1866)
Q Consensus 1289 ~~~mhdlv~dla~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~~~~l~~~~~~~~~ 1367 (1866)
.|+|||+|||+|.++++..... +..+.. .+.++..
T Consensus 480 ~~kmHDvvRe~al~ias~~~~~~e~~iv~--------------------------------------------~~~~~~~ 515 (889)
T KOG4658|consen 480 TVKMHDVVREMALWIASDFGKQEENQIVS--------------------------------------------DGVGLSE 515 (889)
T ss_pred EEEeeHHHHHHHHHHhccccccccceEEE--------------------------------------------CCcCccc
Confidence 8999999999999996532211 001100 0011222
Q ss_pred CCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcC-CcccChhHHhcCCCCcEEEccCCC-CCCCChhhcCCC
Q 000202 1368 PPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCR-LRVIPPSFFELMTSLKVLNLSKTR-IKSLPETLVNLK 1445 (1866)
Q Consensus 1368 ~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~-l~~~p~~~~~~l~~L~~L~Ls~~~-i~~lp~~i~~L~ 1445 (1866)
.|....|...+.+.+++|.+..++....++.|++|.+.+|.. +..++..+|..|+.|++|||++|. +.+||.+|++|.
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred cccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 344566788899999999999999888899999999998864 788888889999999999999874 678898888888
Q ss_pred CCcEEecccccCcccCCccccCCCCCcEEEccCCCCC-cCChhhcCCCccceecccc
Q 000202 1446 CLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIK-MLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1446 ~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~ 1501 (1866)
+||||+|+++. +..+|.++++|+.|.+||+..+.-. .+|..+..|++||+|.+..
T Consensus 596 ~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 596 HLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred hhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 88888888887 5588888888888888888887533 4444455588888887754
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=641.96 Aligned_cols=771 Identities=19% Similarity=0.239 Sum_probs=493.6
Q ss_pred eeEeeccCCCCcchhhhhhhhcchhhhhhhhccccccccCCCCCCCCCCCCCCC-cccccccccccCCccc--ccccCCc
Q 000202 900 SVVLSESVPASDTDSMSFLFEDPASRLENLKEDQMKYSPQPDKQAIPKGEDQTN-PILNICVKQPVEPIPV--IKLGTSN 976 (1866)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~ 976 (1866)
-|.|.++.....+.++.+.|++...+- -.++.++|..+....+...|+.... ......+.+.+..+.. ...+...
T Consensus 105 fy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~ 182 (1153)
T PLN03210 105 FYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSND 182 (1153)
T ss_pred EecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcc
Confidence 566666666666777777776543321 1123345555544444455543321 1111122222211110 0112233
Q ss_pred ccccchhhHHHHHHHHHh--ccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEe---cCC-----------
Q 000202 977 VTAVNYTQRNVRKIFRYV--NDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTV---SRY----------- 1040 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l--~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~----------- 1040 (1866)
..+++|+++.++++..++ ....+++|+||||||+||||||+++|+ ++...|+..+|+.. +..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccc
Confidence 445777778888887777 355688999999999999999999965 56778988887742 111
Q ss_pred CC-HHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhh
Q 000202 1041 WN-TRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVC 1119 (1866)
Q Consensus 1041 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~ 1119 (1866)
++ ...+++.++.++......... . ...+++.|+++|+||||||||+..+|+.+.....+.++||+||||||+.+++
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~~~~--~-~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl 337 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDIKIY--H-LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFL 337 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCcccC--C-HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHH
Confidence 11 123555555555332211110 1 2457788999999999999999999999988777778999999999999999
Q ss_pred ccCCCCcEEEecCCChHHHHHHHHHHhcCCCC-CchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHhhhCCC
Q 000202 1120 RNMDVNMVVKLETLSMKDAWELFCKEVGGIIQ-SPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHASRKFSL 1198 (1866)
Q Consensus 1120 ~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~-~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~~~~~~ 1198 (1866)
..++.+++|+|+.|++++||+||+++||+... .+++.+++++|+++|+|+|||++++|++|++ ++..+|+.+++.+..
T Consensus 338 ~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~ 416 (1153)
T PLN03210 338 RAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRN 416 (1153)
T ss_pred HhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHh
Confidence 88888899999999999999999999987653 3468889999999999999999999999998 578999999987643
Q ss_pred CccccccchhhHHHHHHHhHhccCCcchhHHHHhhcCCCCCccccHHHHHHHHHHcCccchhhHhHHHhHHHHHHHHHHh
Q 000202 1199 PITIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCSLFPEDREVSIVEFIDYCIQEGIIVGTLANAHKRGHQIVDVLVDA 1278 (1866)
Q Consensus 1199 ~~~~~~~~~~~i~~~l~~Sy~~L~~~~lk~cfly~s~Fp~~~~i~~~~Li~~W~aeG~i~~~~~~~~~~~~~~~~~L~~~ 1278 (1866)
. ...+|..+|++||++|+++..|.||+|||+||.+..++ .+..|.+++... ++..++.|+++
T Consensus 417 ~------~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~---------~~~~l~~L~~k 478 (1153)
T PLN03210 417 G------LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD---------VNIGLKNLVDK 478 (1153)
T ss_pred C------ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC---------chhChHHHHhc
Confidence 2 24579999999999998754799999999999987654 466788876542 22348889999
Q ss_pred hhhhcccccCcccchhHHHHHHHHHhhcCC---CCceeeccccchhhHHHhhhhhccCCCCCCCCCCCcccccccchhhH
Q 000202 1279 SLLLINEVHNSIRMPGLMKDLAFGILSSST---GDRCFLSTAEGFQFLSRAYSRLAELPNAGTSSLRSPERSRLFIPEAY 1355 (1866)
Q Consensus 1279 sll~~~~~~~~~~mhdlv~dla~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~~ 1355 (1866)
||++.. .+.+.|||++|+||++|+...+ +++.++...++...+. .. ..+...... ..+...+ +
T Consensus 479 sLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl------~~--~~g~~~v~~---i~l~~~~-~ 544 (1153)
T PLN03210 479 SLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVL------ED--NTGTKKVLG---ITLDIDE-I 544 (1153)
T ss_pred CCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHH------Hh--CcccceeeE---EEeccCc-c
Confidence 999864 3679999999999999986543 4445554433322111 00 001100000 0000000 0
Q ss_pred HHHhcccCCCCCCCCccccccCcEEEccCCCCC-------CCCC-CCCC-CcccEEEccCCcCCcccChhHHhcCCCCcE
Q 000202 1356 QFLLGARAGLTEPPSEEEWTHAKMIFFMDNDLQ-------TLPG-RPSC-PNLLTLFLQRNCRLRVIPPSFFELMTSLKV 1426 (1866)
Q Consensus 1356 ~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~-------~l~~-~~~~-~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~ 1426 (1866)
.........+..+.+|+.|.+..+... .+|. +..+ .+|+.|.+.++ .+..+|..+ .+.+|+.
T Consensus 545 ------~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f--~~~~L~~ 615 (1153)
T PLN03210 545 ------DELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF--RPENLVK 615 (1153)
T ss_pred ------ceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC--CccCCcE
Confidence 000001122455677777777544321 2342 3333 46888888876 677888765 3688999
Q ss_pred EEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCC-CCCcCChhhcCCCccceecccccccc
Q 000202 1427 LNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGT-EIKMLPKEIGKLTSLRYLTVFFFGSM 1505 (1866)
Q Consensus 1427 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~-~i~~lp~~i~~L~~L~~L~l~~~~~~ 1505 (1866)
|+|++|.+..+|..+..+++|++|+|++|..++.+| .++.+++|++|++++| .+..+|..+++|++|++|++.+|..+
T Consensus 616 L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred EECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence 999999888888888889999999998888788887 4788889999999887 56788888999999999988877654
Q ss_pred CCCccccCCCCCCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccC
Q 000202 1506 YKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQ 1585 (1866)
Q Consensus 1506 ~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 1585 (1866)
.. +|.. + ++++|+.|++++|.... .++ ...++|+.|+++.|.+..++..+ ..+
T Consensus 695 ~~-----Lp~~------i-~l~sL~~L~Lsgc~~L~-------~~p---~~~~nL~~L~L~~n~i~~lP~~~-----~l~ 747 (1153)
T PLN03210 695 EI-----LPTG------I-NLKSLYRLNLSGCSRLK-------SFP---DISTNISWLDLDETAIEEFPSNL-----RLE 747 (1153)
T ss_pred Cc-----cCCc------C-CCCCCCEEeCCCCCCcc-------ccc---cccCCcCeeecCCCccccccccc-----ccc
Confidence 32 2321 1 57788888888654322 111 12357888888888766544221 223
Q ss_pred CcceeEEEEecccccccccccccccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCc
Q 000202 1586 QLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLK 1665 (1866)
Q Consensus 1586 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~ 1665 (1866)
+|..|.+..... ..+.. ....+++........+..+.+.++..+..+|. .++++++|+
T Consensus 748 ~L~~L~l~~~~~-~~l~~--------------------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~-si~~L~~L~ 805 (1153)
T PLN03210 748 NLDELILCEMKS-EKLWE--------------------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS-SIQNLHKLE 805 (1153)
T ss_pred ccccccccccch-hhccc--------------------cccccchhhhhccccchheeCCCCCCccccCh-hhhCCCCCC
Confidence 444443321000 00000 00001110000011223333444444444443 256677777
Q ss_pred EEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhcccc
Q 000202 1666 FCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKL 1745 (1866)
Q Consensus 1666 ~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sL 1745 (1866)
.|+|++|+.++.++... .+++|+.|.+++|.++..+ + ...++|+.|++.++ .++.+|. .+..+++|
T Consensus 806 ~L~Ls~C~~L~~LP~~~-----~L~sL~~L~Ls~c~~L~~~-----p-~~~~nL~~L~Ls~n-~i~~iP~--si~~l~~L 871 (1153)
T PLN03210 806 HLEIENCINLETLPTGI-----NLESLESLDLSGCSRLRTF-----P-DISTNISDLNLSRT-GIEEVPW--WIEKFSNL 871 (1153)
T ss_pred EEECCCCCCcCeeCCCC-----CccccCEEECCCCCccccc-----c-ccccccCEeECCCC-CCccChH--HHhcCCCC
Confidence 77777777777665431 3667777777777665431 1 12356777777665 5555533 45667777
Q ss_pred ceeeeccccccceecccCccccccccCCCCcCEEeccCCcccccc
Q 000202 1746 EELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANI 1790 (1866)
Q Consensus 1746 e~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i 1790 (1866)
+.|++++|++++.++.. ...+++|+.|.+++|++|..+
T Consensus 872 ~~L~L~~C~~L~~l~~~-------~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 872 SFLDMNGCNNLQRVSLN-------ISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CEEECCCCCCcCccCcc-------cccccCCCeeecCCCcccccc
Confidence 77777777777666521 235667777777777776654
|
syringae 6; Provisional |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=417.95 Aligned_cols=269 Identities=20% Similarity=0.259 Sum_probs=209.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHhhhhhhhhHHHHHhhhhhhhhh------------------
Q 000202 572 HTDLKQLRLKLAEVRYLLQDAVRCGADQNLNIDTWFKDLRGLTYEVDELIDNWEQSEISKSM------------------ 633 (1866)
Q Consensus 572 ~~~l~~l~~~L~~i~a~L~dAe~~~~~~~~~v~~Wl~qLrd~ayd~eD~lD~~~~~~~~~~~------------------ 633 (1866)
...+..++..|..+++++.||+.++. +...++.|...+++++|++||.++.+......++.
T Consensus 27 ~~~i~~Lk~~L~~l~~~l~d~~a~~~-~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~ 105 (889)
T KOG4658|consen 27 DNYILELKENLKALQSALEDLDAKRD-DLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCG 105 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhh
Confidence 44799999999999999999977654 67778999999999999999999998765533210
Q ss_pred ----hhHHHHHHHHHHHHHHHHhhhhccCcccccccc-cccccCCCCCCcccccccccchhhHHHHHHHhhhhhhccCCc
Q 000202 634 ----FDREIRRIHQQLVRLLNLFHKLATGHYEESSAV-SELSSRRSDDYAVSENDLAVSERDLVHFINKVNYELLRDVNM 708 (1866)
Q Consensus 634 ----~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~d~~~li~~l~~~~~~~~~~ 708 (1866)
....+..+..++..+...++.+........... ......+.+........ +|.+.+++++.+.|..+.
T Consensus 106 ~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------ 178 (889)
T KOG4658|consen 106 FCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------ 178 (889)
T ss_pred hHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------
Confidence 123344455666666666666654332111110 01111233333334444 999999999999887552
Q ss_pred eEEEEEEcCCchhHHHHHHHHhcCcc-ccccccceEEEEECCCCcHHHHHHHHHHHHHHHHhhhhh---h---------h
Q 000202 709 VRILPISGMSGTGRTVLAQRVYSNKK-VKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSEIRRAENM---A---------D 775 (1866)
Q Consensus 709 l~Vi~IvG~gg~Gkttla~~v~~d~~-v~~~F~~~~wv~v~~~f~~~~~~~~i~~~~~~~~~~~~~---~---------~ 775 (1866)
.+|++|+||||+||||||+.+||+.. |+.+|+..|||+||++|+..++-+.|+..++........ . .
T Consensus 179 ~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L 258 (889)
T KOG4658|consen 179 VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLL 258 (889)
T ss_pred CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHh
Confidence 29999999999999999999999998 999999999999999999999999999987642211100 0 1
Q ss_pred ccCeEEEEEEccCCCChHHHHHHHHhcccCCCCCcEEEEecCChHHHhh-ccCCCCcccCCCCCCCcHHhhhhhcCC
Q 000202 776 LSERLLVVLDDVCDIDDEELHNFRLLISNMRDSGSCFLVTTHSHRVATM-MSSVSEGQLISLLKLDSEGYFKSELAP 851 (1866)
Q Consensus 776 ~~~r~LlVlddv~~~~~~~w~~~~~~l~~~~~~gs~iivttr~~~va~~-m~t~~~~~l~~L~~~~~~~lfk~~~~~ 851 (1866)
.++||+|||||||+. ..|+.+..++|. ..+||+|++|||+++||.. |++..++....|..+++|.+|...++.
T Consensus 259 ~~krfllvLDDIW~~--~dw~~I~~~~p~-~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~ 332 (889)
T KOG4658|consen 259 EGKRFLLVLDDIWEE--VDWDKIGVPFPS-RENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGP 332 (889)
T ss_pred ccCceEEEEeccccc--ccHHhcCCCCCC-ccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcc
Confidence 179999999999998 679999999997 5789999999999999998 888788999999999999999988874
|
|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=391.92 Aligned_cols=276 Identities=30% Similarity=0.524 Sum_probs=225.4
Q ss_pred hhHHHHHHHHHhcc--CCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCC-
Q 000202 983 TQRNVRKIFRYVND--VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCK- 1059 (1866)
Q Consensus 983 ~~~~~~~i~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~- 1059 (1866)
|+.++++|.+.|.+ .+.++|+|+||||+||||||++++++..++..|+.++|+.+++..+...+++.|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 46789999999966 778999999999999999999998877789999999999999999999999999999987643
Q ss_pred --CccCHHHHHHHHHHHhCCCcEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhhccCCC-CcEEEecCCChH
Q 000202 1060 --DRETDAQVAEKLWQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVCRNMDV-NMVVKLETLSMK 1136 (1866)
Q Consensus 1060 --~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~-~~~~~l~~L~~~ 1136 (1866)
...+..+....+.+.|+++++||||||||+...|+.+...++....|++||||||+..++..+.. ...|+|++|+.+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45677889999999999999999999999999999999888877789999999999999887654 678999999999
Q ss_pred HHHHHHHHHhcCCC--CCchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHhhhCCCCccccccchhhHHHHH
Q 000202 1137 DAWELFCKEVGGII--QSPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHASRKFSLPITIEECCTEDLIELL 1214 (1866)
Q Consensus 1137 ~a~~Lf~~~~~~~~--~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l 1214 (1866)
+|++||.+.++... ..+...+.+++|+++|+|+||||+++|++|+.+.+..+|+++++.+.............+..++
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l 240 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSAL 240 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999997654 3445667899999999999999999999997655778999988665332211111457899999
Q ss_pred HHhHhccCCcchhHHHHhhcCCCCCccccHHHHHHHHHHcCccch
Q 000202 1215 KFSFDQLKDHDVKSCFLHCSLFPEDREVSIVEFIDYCIQEGIIVG 1259 (1866)
Q Consensus 1215 ~~Sy~~L~~~~lk~cfly~s~Fp~~~~i~~~~Li~~W~aeG~i~~ 1259 (1866)
.+||+.||++ +|+||+|||+||+++.|+++.|+++|++||||..
T Consensus 241 ~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 241 ELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred eechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 9999999997 9999999999999999999999999999999865
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >PLN03194 putative disease resistance protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=324.95 Aligned_cols=154 Identities=32% Similarity=0.511 Sum_probs=140.5
Q ss_pred CCCCCccEEEccccccccCchHHHHHHHHhhCCCceEeeC-CCCCCCCCchhHHHHhhhcceEEEEeccCcccchhhHHH
Q 000202 11 NDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDN-DLKRGDEIPESLLGTIEASTISIIIFSEKYASSKWCLDE 89 (1866)
Q Consensus 11 ~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~E 89 (1866)
+...+|||||||+|+|+|++|++||+++|+++||+||+|+ ++++|+.|.++|.+||++|+++|||||++|++|.||++|
T Consensus 22 ~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdE 101 (187)
T PLN03194 22 SSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHE 101 (187)
T ss_pred CCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHH
Confidence 3468899999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEEEEEecCCccccc-ccchhhhHHHHhhcchhhhhhHHHHHHhhhccCCCcccc-cCccchhhh
Q 000202 90 LLKILECKRNYGQIVIPVFYRVDPSHVRKQ-IGSFGDSFFMLEERFPYKMRNWRSALTEAADLSGFDSCV-IRPESRLVA 167 (1866)
Q Consensus 90 l~~~~~~~~~~~~~v~pvf~~v~p~~vr~~-~g~~~~~~~~~~~~~~~~~~~wr~al~~~a~~~g~~~~~-~~~e~~~i~ 167 (1866)
|++|+++. ..|+||||+|+|+|||+| .|.+ ..+++++||+||++||+++|+++.. ...|+++|+
T Consensus 102 L~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~~----------~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~ 167 (187)
T PLN03194 102 LALIMESK----KRVIPIFCDVKPSQLRVVDNGTC----------PDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVT 167 (187)
T ss_pred HHHHHHcC----CEEEEEEecCCHHHhhccccCCC----------CHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHH
Confidence 99999863 479999999999999997 4432 3478999999999999999998764 345999999
Q ss_pred hhHHHHhhccc
Q 000202 168 DIANEVLERLD 178 (1866)
Q Consensus 168 ~i~~~v~~~l~ 178 (1866)
+|+..|.++|-
T Consensus 168 ~iv~~v~k~l~ 178 (187)
T PLN03194 168 MASDAVIKNLI 178 (187)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=349.73 Aligned_cols=269 Identities=29% Similarity=0.441 Sum_probs=213.2
Q ss_pred ehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHh--hhccccceEEEEeeccccccccHHHHHHHHHHHHhc
Q 000202 191 VEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNK--ISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLN 268 (1866)
Q Consensus 191 r~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~ 268 (1866)
||.++++|.+.|.....+.++|+|+||||+||||||.+++++ +..+|+.++|+...+.. ....++.+++..+..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~----~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNP----SLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-S----CCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccc----ccccccccccccccc
Confidence 789999999999986678999999999999999999999997 88999999999876652 226777888888776
Q ss_pred ccccc-C--ccchhHHHHHHHhhcCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccchhccCcc-ceeeecCC
Q 000202 269 DRNVK-N--FQNISVNFQSKRLARKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEV-DHIYQMKE 344 (1866)
Q Consensus 269 ~~~~~-~--~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~-~~~~~l~~ 344 (1866)
..... . ........+.+.|+++++||||||||+...|+.+...++.+..|++||||||++.++...+. ...|++++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 63311 1 11223377888899999999999999999999888887777789999999999998876654 67999999
Q ss_pred CCHHHHHHHHHhhcCCCC-CCChhHHHHHHHHHHHhCCCcceeeeecccccCC-CHHHHHHHHHHhccCC------Cchh
Q 000202 345 LVHADAHKLFTQCAFRGD-HLDAGYTELAHKALKYAQGVPLALKVLGCYLCGR-SKEEWESAMRKLEIVP------HMEI 416 (1866)
Q Consensus 345 L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~-~~~~w~~~l~~l~~~~------~~~i 416 (1866)
|+.+||++||.+.++... ...+...+.+++|++.|+|+||||+++|++|+.+ +..+|+++++.+.... ...+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999997655 3344556789999999999999999999999543 6688999998776432 3569
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHhHHhhcccCCCCCCCeeeecchhHHHH
Q 000202 417 QEVLKISYDSLDDSQKRMHDLLRAMGREIVRKESIVDPGKRSRLWHDEDIYE 468 (1866)
Q Consensus 417 ~~~l~~Sy~~L~~~~k~~~~~l~~~~~~i~~~~~~~~~~~~~rlW~~e~~~~ 468 (1866)
..++.+||+.|+++.|.||.+|+ +||++..++...++++|.+||++.
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~-----~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLS-----IFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGG-----GSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred cccceechhcCCccHHHHHhhCc-----CCCCCceECHHHHHHHHHHCCCCc
Confidence 99999999999999999999999 999999999999999999999975
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-20 Score=258.96 Aligned_cols=89 Identities=18% Similarity=0.105 Sum_probs=47.8
Q ss_pred cccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCcccccccc--C
Q 000202 1716 FAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIWR--N 1793 (1866)
Q Consensus 1716 ~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~~--~ 1793 (1866)
+++|+.|++++| ++....| ..+.++++|+.|+|++|.-...++ ..+..+++|+.|+|++|.-...++. .
T Consensus 498 l~~L~~L~Ls~N-~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p-------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 568 (968)
T PLN00113 498 LSELMQLKLSEN-KLSGEIP-DELSSCKKLVSLDLSHNQLSGQIP-------ASFSEMPVLSQLDLSQNQLSGEIPKNLG 568 (968)
T ss_pred hhccCEEECcCC-cceeeCC-hHHcCccCCCEEECCCCcccccCC-------hhHhCcccCCEEECCCCcccccCChhHh
Confidence 444455555554 2222212 233445555555555553221221 1234667788888887775444543 2
Q ss_pred CCCCccEEEEEcCccccccC
Q 000202 1794 DWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1794 ~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
.+++|+.|++++|+-...+|
T Consensus 569 ~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 569 NVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred cCcccCEEeccCCcceeeCC
Confidence 56788888888887665555
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-20 Score=261.12 Aligned_cols=405 Identities=19% Similarity=0.162 Sum_probs=195.1
Q ss_pred cccCcEEEccCCCCC-CCC-CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCC-CCChhhcCCCCCcEE
Q 000202 1374 WTHAKMIFFMDNDLQ-TLP-GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIK-SLPETLVNLKCLQIL 1450 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~-~l~-~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L 1450 (1866)
+++|++|++++|.+. .+| .+..+++|++|+|++|.....+|..+ +++++|++|+|++|.+. .+|..++++.+|++|
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 445555555555554 333 23455555555555554334444443 44555555555555544 445555555555555
Q ss_pred ecccccCcccCCccccCCCCCcEEEccCCCCC-cCChhhcCCCccceecccccccc----------CCCccccCCCCCCC
Q 000202 1451 ILRDCDFLFVLPPEVGSLECLEVLDLRGTEIK-MLPKEIGKLTSLRYLTVFFFGSM----------YKSEYIKLPPDLIS 1519 (1866)
Q Consensus 1451 ~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~----------~~~~~~~l~~~~~~ 1519 (1866)
+|++|.+.+.+|..++++++|++|++++|.+. .+|..++++++|++|++..+.-. ..+..+.+..+.+.
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 55555555555555555555555555555554 44555555555555555432110 01111111111111
Q ss_pred ---hhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc-hHHhhccCccccCCcceeEEEEe
Q 000202 1520 ---SDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC-VAEFLKGSAWNNQQLTEFKFVVG 1595 (1866)
Q Consensus 1520 ---~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~L~~l~l~~~ 1595 (1866)
...+.++++|+.|+++.+... ...+..+..+++|+.|+++.|.+.. ++..+ ....+|+.+.+..+
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l----~~~~~L~~L~Ls~n 366 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFT-------GKIPVALTSLPRLQVLQLWSNKFSGEIPKNL----GKHNNLTVLDLSTN 366 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccC-------CcCChhHhcCCCCCEEECcCCCCcCcCChHH----hCCCCCcEEECCCC
Confidence 112333444444444322111 1223344455555555555554431 11111 12234444444211
Q ss_pred cccccccccccccccccccCccceeEeecCC-CCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCC
Q 000202 1596 HDVKSIVSWVTDYVQCDYNQHDRCLRFVNGK-NVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLK 1674 (1866)
Q Consensus 1596 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~ 1674 (1866)
.-....+.++. .......+.+...... .+|.+ +..+..+..+.+.++.-...++ ..+..+++|+.|++++|.-
T Consensus 367 ~l~~~~p~~~~----~~~~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l 440 (968)
T PLN00113 367 NLTGEIPEGLC----SSGNLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELP-SEFTKLPLVYFLDISNNNL 440 (968)
T ss_pred eeEeeCChhHh----CcCCCCEEECcCCEecccCCHH-HhCCCCCCEEECcCCEeeeECC-hhHhcCCCCCEEECcCCcc
Confidence 11111111110 0011111122211222 22322 2222333444443332212222 2466788888888887543
Q ss_pred ccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeecccc
Q 000202 1675 IKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCL 1754 (1866)
Q Consensus 1675 l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~ 1754 (1866)
...++. ....+++|+.|+++++.-...+. .....++|+.|++++| ++....+ ..+.++++|+.|++++|.
T Consensus 441 ~~~~~~----~~~~l~~L~~L~L~~n~~~~~~p----~~~~~~~L~~L~ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~ 510 (968)
T PLN00113 441 QGRINS----RKWDMPSLQMLSLARNKFFGGLP----DSFGSKRLENLDLSRN-QFSGAVP-RKLGSLSELMQLKLSENK 510 (968)
T ss_pred cCccCh----hhccCCCCcEEECcCceeeeecC----cccccccceEEECcCC-ccCCccC-hhhhhhhccCEEECcCCc
Confidence 322221 22357888888888764332211 1113578888888888 4444333 356678888888888884
Q ss_pred ccceecccCccccccccCCCCcCEEeccCCcccccccc--CCCCCccEEEEEcCccccccC
Q 000202 1755 AVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIWR--NDWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1755 ~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~~--~~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
-...+| ..+..+++|+.|+|++|.-...++. ..+++|+.|++++|.-...+|
T Consensus 511 l~~~~p-------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 511 LSGEIP-------DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564 (968)
T ss_pred ceeeCC-------hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC
Confidence 333333 1244678888888888764433322 367888888888887655554
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-20 Score=216.77 Aligned_cols=325 Identities=21% Similarity=0.251 Sum_probs=218.9
Q ss_pred ccccccCcEEEccCCCCCCCC-CCCCCCcccEEEccCCc-CCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCc
Q 000202 1371 EEEWTHAKMIFFMDNDLQTLP-GRPSCPNLLTLFLQRNC-RLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQ 1448 (1866)
Q Consensus 1371 ~~~~~~l~~l~l~~~~l~~l~-~~~~~~~L~~L~L~~~~-~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~ 1448 (1866)
...+.+|+.|++.+|.+..+. .++.+++||.+.+..|+ ....+|+.+|. |..|.+||||+|.+.+.|..+..-+++-
T Consensus 51 L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 51 LSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLREVPTNLEYAKNSI 129 (1255)
T ss_pred HHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcc-cccceeeecchhhhhhcchhhhhhcCcE
Confidence 556778888999999988766 56789999999998875 34569999975 8999999999999999999999999999
Q ss_pred EEecccccCcccCCcc-ccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccc
Q 000202 1449 ILILRDCDFLFVLPPE-VGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQ 1527 (1866)
Q Consensus 1449 ~L~L~~~~~~~~lP~~-i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~ 1527 (1866)
.|+||+|+ +..+|.+ +.+|+.|-+||||+|.+..+|+.+.+|..|++|.+++.. -+.+....+..++
T Consensus 130 VLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-----------L~hfQLrQLPsmt 197 (1255)
T KOG0444|consen 130 VLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-----------LNHFQLRQLPSMT 197 (1255)
T ss_pred EEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-----------hhHHHHhcCccch
Confidence 99999998 5677765 458999999999999999999999999999999986421 1112222245567
Q ss_pred cCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccccccc
Q 000202 1528 ALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTD 1607 (1866)
Q Consensus 1528 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 1607 (1866)
+|+.|.++..... ...++..+..+.+|+.++++.|++..+++.+.. ..+|+.|.+.
T Consensus 198 sL~vLhms~TqRT------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~----l~~LrrLNLS-------------- 253 (1255)
T KOG0444|consen 198 SLSVLHMSNTQRT------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYK----LRNLRRLNLS-------------- 253 (1255)
T ss_pred hhhhhhcccccch------hhcCCCchhhhhhhhhccccccCCCcchHHHhh----hhhhheeccC--------------
Confidence 7777777743322 234788888999999999999888777665542 1223332221
Q ss_pred cccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCcccc
Q 000202 1608 YVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTA 1687 (1866)
Q Consensus 1608 ~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~ 1687 (1866)
... ++.|.. ..+...+|+.|++++ +.++.++.. ..
T Consensus 254 --------------~N~-------------------------iteL~~-~~~~W~~lEtLNlSr-NQLt~LP~a----vc 288 (1255)
T KOG0444|consen 254 --------------GNK-------------------------ITELNM-TEGEWENLETLNLSR-NQLTVLPDA----VC 288 (1255)
T ss_pred --------------cCc-------------------------eeeeec-cHHHHhhhhhhcccc-chhccchHH----Hh
Confidence 000 111100 124455677777777 566666543 23
Q ss_pred cccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccCcccc
Q 000202 1688 VFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITY 1767 (1866)
Q Consensus 1688 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~ 1767 (1866)
-++.|+.|++.+ ++|+-. ..+...|.+.+|+.++..++ +|+-+|. ++..|+.|+.|.++ |+.|..+|
T Consensus 289 KL~kL~kLy~n~-NkL~Fe-GiPSGIGKL~~Levf~aanN-~LElVPE--glcRC~kL~kL~L~-~NrLiTLP------- 355 (1255)
T KOG0444|consen 289 KLTKLTKLYANN-NKLTFE-GIPSGIGKLIQLEVFHAANN-KLELVPE--GLCRCVKLQKLKLD-HNRLITLP------- 355 (1255)
T ss_pred hhHHHHHHHhcc-Cccccc-CCccchhhhhhhHHHHhhcc-ccccCch--hhhhhHHHHHhccc-ccceeech-------
Confidence 466777776654 222210 00111234556666666554 5665533 56667777777764 34555554
Q ss_pred ccccCCCCcCEEeccCCcccccc
Q 000202 1768 SSCIMLPSLKKLRLHHLPELANI 1790 (1866)
Q Consensus 1768 ~~~~~lp~L~~L~L~~c~~L~~i 1790 (1866)
..++.+|.|+.|++++.|+|.--
T Consensus 356 eaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 356 EAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred hhhhhcCCcceeeccCCcCccCC
Confidence 23456677777777777776543
|
|
| >PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-19 Score=187.48 Aligned_cols=129 Identities=34% Similarity=0.562 Sum_probs=112.9
Q ss_pred EEEccccccccCchHHHHHHHHhhC--CCceEeeC-CCCCCCCCchhHHHHhhhcceEEEEeccCcccchhhHHHHHHHH
Q 000202 18 VFLSFRGEDTRDNFTSHLYSALCQN--NVETFIDN-DLKRGDEIPESLLGTIEASTISIIIFSEKYASSKWCLDELLKIL 94 (1866)
Q Consensus 18 vFis~~~~d~~~~~~~~l~~~L~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~~ 94 (1866)
|||||++.|.+++|+++|..+|++. |+++|+++ |+.+|..+.++|.++|++||++|+|+|++|++|.||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999444689999999999999 99999999 99999999999999999999999999999999999999999999
Q ss_pred HHHhhCC--CEEEEEEEEecCCccc-ccccchhhhHHHHhhcch-----hhhhhHHHHHH
Q 000202 95 ECKRNYG--QIVIPVFYRVDPSHVR-KQIGSFGDSFFMLEERFP-----YKMRNWRSALT 146 (1866)
Q Consensus 95 ~~~~~~~--~~v~pvf~~v~p~~vr-~~~g~~~~~~~~~~~~~~-----~~~~~wr~al~ 146 (1866)
++....+ ..|+||||+|.+++++ .+.+.|+..|..+....+ .....|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9986654 8999999999999999 799999998877665433 34788998764
|
In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A .... |
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-19 Score=205.51 Aligned_cols=346 Identities=20% Similarity=0.245 Sum_probs=221.7
Q ss_pred CccccccCcEEEccCCCCCCCCCCCCC-CcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCC
Q 000202 1370 SEEEWTHAKMIFFMDNDLQTLPGRPSC-PNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCL 1447 (1866)
Q Consensus 1370 ~~~~~~~l~~l~l~~~~l~~l~~~~~~-~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L 1447 (1866)
.+.++++|+.+++..|.+..+|.++.. .+|..|+|.+| .+..+..+-...++.||.||||.|.|+.+| .++..-.++
T Consensus 97 ~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni 175 (873)
T KOG4194|consen 97 FFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNI 175 (873)
T ss_pred HHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCc
Confidence 357889999999999999999987654 56999999988 677777766788999999999999999998 567777899
Q ss_pred cEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhcc
Q 000202 1448 QILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRL 1526 (1866)
Q Consensus 1448 ~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L 1526 (1866)
++|+|++|.+...--..|.+|.+|-+|.|+.|.|+.+|.. |.+|++|+.|++.... + + ...+..+.+|
T Consensus 176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-i---r-------ive~ltFqgL 244 (873)
T KOG4194|consen 176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-I---R-------IVEGLTFQGL 244 (873)
T ss_pred eEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-e---e-------eehhhhhcCc
Confidence 9999999998776677889999999999999999999865 6669999999885411 0 0 1112235566
Q ss_pred ccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEeccccc--cccc
Q 000202 1527 QALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKS--IVSW 1604 (1866)
Q Consensus 1527 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~ 1604 (1866)
++|+.|.+..+... +.--..+-.|.+++.|++..|++..+.+ +.......|+.|.+..+ .+.+ ...|
T Consensus 245 ~Sl~nlklqrN~I~-------kL~DG~Fy~l~kme~l~L~~N~l~~vn~---g~lfgLt~L~~L~lS~N-aI~rih~d~W 313 (873)
T KOG4194|consen 245 PSLQNLKLQRNDIS-------KLDDGAFYGLEKMEHLNLETNRLQAVNE---GWLFGLTSLEQLDLSYN-AIQRIHIDSW 313 (873)
T ss_pred hhhhhhhhhhcCcc-------cccCcceeeecccceeecccchhhhhhc---ccccccchhhhhccchh-hhheeecchh
Confidence 66666666532211 1122344556666666776666554431 11111222232222110 0000 0011
Q ss_pred ccccccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCc
Q 000202 1605 VTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEH 1684 (1866)
Q Consensus 1605 ~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~ 1684 (1866)
. .....+.+.| .++.+++++...+..+..|+.|.++. +.+..+-..
T Consensus 314 s-----ftqkL~~LdL-------------------------s~N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~--- 359 (873)
T KOG4194|consen 314 S-----FTQKLKELDL-------------------------SSNRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEG--- 359 (873)
T ss_pred h-----hcccceeEec-------------------------cccccccCChhHHHHHHHhhhhcccc-cchHHHHhh---
Confidence 0 0000111112 23345555555566677788888877 566665433
Q ss_pred cccccccccccccccccccc-ccccccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccC
Q 000202 1685 TTAVFPSLENLTLNHLWDLT-CIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDG 1763 (1866)
Q Consensus 1685 ~~~~f~~L~~L~l~~~~~L~-~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~ 1763 (1866)
...++.+|++|++.+. .+. ++-....+..++|+|++|.+.++ +|+.++. ..+..+++||+|++.++ .+.++-.+
T Consensus 360 af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~k-rAfsgl~~LE~LdL~~N-aiaSIq~n- 434 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPK-RAFSGLEALEHLDLGDN-AIASIQPN- 434 (873)
T ss_pred HHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecCc-eeeecch-hhhccCcccceecCCCC-cceeeccc-
Confidence 4556778888887653 111 11122233346899999999988 8888755 45677999999999886 34454322
Q ss_pred ccccccccCCCCcCEEeccC
Q 000202 1764 EITYSSCIMLPSLKKLRLHH 1783 (1866)
Q Consensus 1764 ~~~~~~~~~lp~L~~L~L~~ 1783 (1866)
....+ .|+.|.+..
T Consensus 435 -----AFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 435 -----AFEPM-ELKELVMNS 448 (873)
T ss_pred -----ccccc-hhhhhhhcc
Confidence 12233 777777643
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-17 Score=194.93 Aligned_cols=388 Identities=21% Similarity=0.220 Sum_probs=235.4
Q ss_pred cEEEccCCCCCCCC--CCCC--CCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecc
Q 000202 1378 KMIFFMDNDLQTLP--GRPS--CPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILR 1453 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~--~~~~--~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~ 1453 (1866)
+.++++++.+..+. .+.+ .+.-++|++++| .+..+...+|.++++|+.+++..|.++.+|...+...||+.|+|.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeecccc-ccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence 34566666655431 1111 234566899877 677887777888999999999999999999888888889999999
Q ss_pred cccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEe
Q 000202 1454 DCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETL 1532 (1866)
Q Consensus 1454 ~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L 1532 (1866)
+|.+...-.+.+..++.|+.|||+.|.|+++|.. +.+-.++++|++++.. .+ .+ ..+.+.+|.+|-.|
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It-----~l-----~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-IT-----TL-----ETGHFDSLNSLLTL 202 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-cc-----cc-----ccccccccchheee
Confidence 9887766667788888999999999999888754 6666788888886521 11 11 12335667777777
Q ss_pred ecccCCCCCcccccccccc-ccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccccccccccc
Q 000202 1533 SIDVHPGDKRWDKDVKIVI-TEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYVQC 1611 (1866)
Q Consensus 1533 ~l~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 1611 (1866)
.++.+. +..++ ..+++|++|++|++..|.++.+...... ..++|+.+++- .+++..+.+-.
T Consensus 203 kLsrNr--------ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFq---gL~Sl~nlklq-rN~I~kL~DG~------ 264 (873)
T KOG4194|consen 203 KLSRNR--------ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQ---GLPSLQNLKLQ-RNDISKLDDGA------ 264 (873)
T ss_pred ecccCc--------ccccCHHHhhhcchhhhhhccccceeeehhhhhc---Cchhhhhhhhh-hcCcccccCcc------
Confidence 777432 22233 3456688888888888877655321111 11223322221 11111111000
Q ss_pred cccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCcccccccc
Q 000202 1612 DYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPS 1691 (1866)
Q Consensus 1612 ~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~ 1691 (1866)
++.+.++ ..+ ...+++++.+...++-.+++|+.|+++. +.++.+-.. +....++
T Consensus 265 ----------Fy~l~km-----------e~l-~L~~N~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d---~Wsftqk 318 (873)
T KOG4194|consen 265 ----------FYGLEKM-----------EHL-NLETNRLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHID---SWSFTQK 318 (873)
T ss_pred ----------eeeeccc-----------cee-ecccchhhhhhcccccccchhhhhccch-hhhheeecc---hhhhccc
Confidence 0000000 000 1123345555555666788888888887 566666433 2344678
Q ss_pred ccccccccccccccccccccccc---ccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccCccccc
Q 000202 1692 LENLTLNHLWDLTCIWQGILPEG---SFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYS 1768 (1866)
Q Consensus 1692 L~~L~l~~~~~L~~~~~~~~~~~---~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~ 1768 (1866)
|+.|.++. +.++. ++++ .+..|++|.++.+ ++.++-. ..+..+.+|++|++.++ .+.-.+.++ ..
T Consensus 319 L~~LdLs~-N~i~~-----l~~~sf~~L~~Le~LnLs~N-si~~l~e-~af~~lssL~~LdLr~N-~ls~~IEDa---a~ 386 (873)
T KOG4194|consen 319 LKELDLSS-NRITR-----LDEGSFRVLSQLEELNLSHN-SIDHLAE-GAFVGLSSLHKLDLRSN-ELSWCIEDA---AV 386 (873)
T ss_pred ceeEeccc-ccccc-----CChhHHHHHHHhhhhccccc-chHHHHh-hHHHHhhhhhhhcCcCC-eEEEEEecc---hh
Confidence 88888875 22222 2333 3567778888776 5665532 44567888999998876 333333332 22
Q ss_pred cccCCCCcCEEeccCCccccccccC---CCCCccEEEEEcCcccccc-----CCCcc---CcccceEEechHHHHhh
Q 000202 1769 SCIMLPSLKKLRLHHLPELANIWRN---DWPSLEYISFYGCPKLKKM-----GMDSK---LKETLIWIKAEKKWWAE 1834 (1866)
Q Consensus 1769 ~~~~lp~L~~L~L~~c~~L~~i~~~---~lpsLe~L~I~~Cp~L~~l-----pl~~~---l~~~~~~i~ce~~~~~~ 1834 (1866)
....+|+|++|.+.+. +|++|... .+++||+|++.+.+--.-- |+.-+ +++..+..+|.-+|..+
T Consensus 387 ~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~q 462 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQ 462 (873)
T ss_pred hhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHH
Confidence 3457899999999886 48888543 6789999999776532210 11100 12334445888888653
|
|
| >smart00255 TIR Toll - interleukin 1 - resistance | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.4e-17 Score=172.12 Aligned_cols=134 Identities=42% Similarity=0.672 Sum_probs=114.9
Q ss_pred CccEEEcccc-ccccCchHHHHHHHHhhCCCceEeeCCCCCCCCCchhHHHHhhhcceEEEEeccCcccchhhHHHHHHH
Q 000202 15 MYDVFLSFRG-EDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPESLLGTIEASTISIIIFSEKYASSKWCLDELLKI 93 (1866)
Q Consensus 15 ~~dvFis~~~-~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~ 93 (1866)
.|||||||++ ++.++.|+.+|..+|+..|+.+|.|+....|... .+|.++|++|+++|+|+|++|+.|.||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 4999999999 5566889999999999999999999854433333 3999999999999999999999999999999999
Q ss_pred HHHHhh-CCCEEEEEEEEecCCcccccccchhhhHHHHhhcchhhh--hhHHHHHHhhh
Q 000202 94 LECKRN-YGQIVIPVFYRVDPSHVRKQIGSFGDSFFMLEERFPYKM--RNWRSALTEAA 149 (1866)
Q Consensus 94 ~~~~~~-~~~~v~pvf~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~--~~wr~al~~~a 149 (1866)
+++... ...+||||+|+..|..+..+.+.+..++..+..++.++. ..|+.++.+++
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~ 138 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVP 138 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhc
Confidence 998744 667999999999998899999999999988755665554 58999887654
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.4e-17 Score=190.14 Aligned_cols=187 Identities=21% Similarity=0.296 Sum_probs=123.5
Q ss_pred CCCccccccCcEEEccCCCCCCCC-CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCC
Q 000202 1368 PPSEEEWTHAKMIFFMDNDLQTLP-GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKC 1446 (1866)
Q Consensus 1368 ~~~~~~~~~l~~l~l~~~~l~~l~-~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~ 1446 (1866)
|+.+..+..|+.|+++.|.+.+.| .+...+++.+|+|++| .+..+|.++|-+++-|-+||||+|++..+|+.+..|.+
T Consensus 96 P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSM 174 (1255)
T ss_pred CchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhh
Confidence 455667777888888888888887 4556778888888877 67788888888888888888888888888888888888
Q ss_pred CcEEecccccCcccCCccccCCCCCcEEEccCCCCC--cCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhh
Q 000202 1447 LQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIK--MLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILS 1524 (1866)
Q Consensus 1447 L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~ 1524 (1866)
||+|+|++|.+...--..+-.+++|++|.+++|+-+ .+|.++..|.||+.++++.. .+..+ +..+-
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N------~Lp~v------Pecly 242 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN------NLPIV------PECLY 242 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc------CCCcc------hHHHh
Confidence 888888888754322223345667777788877533 67777777777777776431 11111 22345
Q ss_pred ccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHH
Q 000202 1525 RLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAE 1575 (1866)
Q Consensus 1525 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 1575 (1866)
++.+|+.|+++.+.. ..+........+|++|+++.|++..+++
T Consensus 243 ~l~~LrrLNLS~N~i--------teL~~~~~~W~~lEtLNlSrNQLt~LP~ 285 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKI--------TELNMTEGEWENLETLNLSRNQLTVLPD 285 (1255)
T ss_pred hhhhhheeccCcCce--------eeeeccHHHHhhhhhhccccchhccchH
Confidence 666677776664322 1222333344566666666666555443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-17 Score=184.16 Aligned_cols=396 Identities=20% Similarity=0.206 Sum_probs=238.4
Q ss_pred CCCCCccccccCcEEEccCCCCCCCC-CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCC
Q 000202 1366 TEPPSEEEWTHAKMIFFMDNDLQTLP-GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNL 1444 (1866)
Q Consensus 1366 ~~~~~~~~~~~l~~l~l~~~~l~~l~-~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L 1444 (1866)
+.++++..+..+..++..+|.+..+| ++..|.+|..|++.+| .+..+|+.... |+.|+.||...|-++.+|+.++.|
T Consensus 128 el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l 205 (565)
T KOG0472|consen 128 ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGL 205 (565)
T ss_pred ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHH-HHHHHhcccchhhhhcCChhhcch
Confidence 34556667777777788888888888 4677888888888887 67778877756 888999998888888999999999
Q ss_pred CCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhc-CCCccceeccccccccCCCccccCCCCCCChhhh
Q 000202 1445 KCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIG-KLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDIL 1523 (1866)
Q Consensus 1445 ~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~-~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l 1523 (1866)
..|..|+|+.|+ +..+| .|+.+..|..|+++.|.|+.+|..++ +|.+|..|++.. .....+|. .+
T Consensus 206 ~~L~~LyL~~Nk-i~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd------Nklke~Pd------e~ 271 (565)
T KOG0472|consen 206 ESLELLYLRRNK-IRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD------NKLKEVPD------EI 271 (565)
T ss_pred hhhHHHHhhhcc-cccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc------cccccCch------HH
Confidence 999999999888 56778 78888888889988888888888766 788888887732 23333333 46
Q ss_pred hccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhcc-Ccc-ccCCcceeEEEE------e
Q 000202 1524 SRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKG-SAW-NNQQLTEFKFVV------G 1595 (1866)
Q Consensus 1524 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~-~~~-~~~~L~~l~l~~------~ 1595 (1866)
..|++|+.|+++ ++.+..++.+++++ +|+.|-+.+|.++.+...+-. ... -.+.|++..... +
T Consensus 272 clLrsL~rLDlS--------NN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~ 342 (565)
T KOG0472|consen 272 CLLRSLERLDLS--------NNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG 342 (565)
T ss_pred HHhhhhhhhccc--------CCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence 678899999998 56677789999999 999999999998776432221 111 011122111100 0
Q ss_pred cc--cccccccccccccccccCccceeEeecCCCCChHHHHHHHhhc--ceecccccCceecCCCCcccccCCcEEEecc
Q 000202 1596 HD--VKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHST--AFYVDHHLSIVSLSDFGVGYMSGLKFCIISE 1671 (1866)
Q Consensus 1596 ~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~--~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~ 1671 (1866)
.. -...+.|...........+.+.+.....+.+|.++++...... ..... -.++..+|. .+..+..+...-+.+
T Consensus 343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfs-kNqL~elPk-~L~~lkelvT~l~ls 420 (565)
T KOG0472|consen 343 GTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFS-KNQLCELPK-RLVELKELVTDLVLS 420 (565)
T ss_pred cccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecc-cchHhhhhh-hhHHHHHHHHHHHhh
Confidence 00 0011222111111122233455566677888888876653211 00000 011222221 011111222222233
Q ss_pred cCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeec
Q 000202 1672 CLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVE 1751 (1866)
Q Consensus 1672 c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~ 1751 (1866)
.+.+..++.. ...|++|..|.+++.. |. .-+...+.+..|+.|+|+.+ +.+.+|.| +.-+..||.+-.+
T Consensus 421 nn~isfv~~~----l~~l~kLt~L~L~NN~-Ln---~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~--~y~lq~lEtllas 489 (565)
T KOG0472|consen 421 NNKISFVPLE----LSQLQKLTFLDLSNNL-LN---DLPEEMGSLVRLQTLNLSFN-RFRMLPEC--LYELQTLETLLAS 489 (565)
T ss_pred cCccccchHH----HHhhhcceeeecccch-hh---hcchhhhhhhhhheeccccc-ccccchHH--HhhHHHHHHHHhc
Confidence 3344333322 2345666666665421 11 11222345666777777776 55555443 2223334444333
Q ss_pred cccccceecccCccccccccCCCCcCEEeccCCcccccccc--CCCCCccEEEEEcCc
Q 000202 1752 YCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIWR--NDWPSLEYISFYGCP 1807 (1866)
Q Consensus 1752 ~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~~--~~lpsLe~L~I~~Cp 1807 (1866)
...+.++..+ ++..+.+|..|+|.+. .++.++. +++++|++|.++|.|
T Consensus 490 -~nqi~~vd~~------~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 490 -NNQIGSVDPS------GLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred -cccccccChH------HhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence 3355555433 3567788888888765 4666654 488899999998876
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-16 Score=194.03 Aligned_cols=116 Identities=23% Similarity=0.305 Sum_probs=67.6
Q ss_pred ccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecc-----
Q 000202 1687 AVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIIL----- 1761 (1866)
Q Consensus 1687 ~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~----- 1761 (1866)
..++.|+.|++.+. .|++-+ ......|++||.|+++++ +|... |.+.+.++..||+|.++++ .|+.++.
T Consensus 356 ~~~~~Lq~LylanN-~Ltd~c--~p~l~~~~hLKVLhLsyN-rL~~f-pas~~~kle~LeeL~LSGN-kL~~Lp~tva~~ 429 (1081)
T KOG0618|consen 356 NNHAALQELYLANN-HLTDSC--FPVLVNFKHLKVLHLSYN-RLNSF-PASKLRKLEELEELNLSGN-KLTTLPDTVANL 429 (1081)
T ss_pred hhhHHHHHHHHhcC-cccccc--hhhhccccceeeeeeccc-ccccC-CHHHHhchHHhHHHhcccc-hhhhhhHHHHhh
Confidence 45677777777652 233211 112235777778877776 66664 4456677777777777765 3444431
Q ss_pred --------cCcc--ccccccCCCCcCEEeccCCccccccccC---CCCCccEEEEEcCccc
Q 000202 1762 --------DGEI--TYSSCIMLPSLKKLRLHHLPELANIWRN---DWPSLEYISFYGCPKL 1809 (1866)
Q Consensus 1762 --------~~~~--~~~~~~~lp~L~~L~L~~c~~L~~i~~~---~lpsLe~L~I~~Cp~L 1809 (1866)
.+.. ....+..+|.|+.++|+ |.+|+.+-.. ..|.|++|+++|.+.+
T Consensus 430 ~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCccc
Confidence 1100 00123366788888885 4456554221 2378999999998764
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-16 Score=176.04 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=65.5
Q ss_pred CcccccCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccch
Q 000202 1657 GVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTC 1736 (1866)
Q Consensus 1657 ~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~ 1736 (1866)
.+.++++|..|++++ +-+.+++.+. +.+-.|+.|+++.. ..++..... -....|+.+ +....++..+++
T Consensus 430 ~l~~l~kLt~L~L~N-N~Ln~LP~e~----~~lv~Lq~LnlS~N-rFr~lP~~~---y~lq~lEtl-las~nqi~~vd~- 498 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSN-NLLNDLPEEM----GSLVRLQTLNLSFN-RFRMLPECL---YELQTLETL-LASNNQIGSVDP- 498 (565)
T ss_pred HHHhhhcceeeeccc-chhhhcchhh----hhhhhhheeccccc-ccccchHHH---hhHHHHHHH-HhccccccccCh-
Confidence 356778888888877 5566666542 33455777777642 222111000 011223333 333336777755
Q ss_pred hhhhhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCc
Q 000202 1737 SMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLP 1785 (1866)
Q Consensus 1737 ~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~ 1785 (1866)
++++++.+|.+|++.++ .+..+|. .+..+.+|++|.|++.|
T Consensus 499 ~~l~nm~nL~tLDL~nN-dlq~IPp-------~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNN-DLQQIPP-------ILGNMTNLRHLELDGNP 539 (565)
T ss_pred HHhhhhhhcceeccCCC-chhhCCh-------hhccccceeEEEecCCc
Confidence 57788888888888765 5666652 24578888888888877
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-14 Score=178.17 Aligned_cols=400 Identities=18% Similarity=0.237 Sum_probs=227.0
Q ss_pred cCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecc
Q 000202 1376 HAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILR 1453 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~ 1453 (1866)
.+..+++..|.+...| ...++-+|+.|++++| .+..+|..+ ..+.+|+.|+++.|.|..+|.+++++.+|++|.|.
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn-~~~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNN-QISSFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeecccc-ccccCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheec
Confidence 3667777888777655 2335556999999977 678888877 66899999999999999999999999999999999
Q ss_pred cccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccC-----CCccccCCCCCCChhhhhcccc
Q 000202 1454 DCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMY-----KSEYIKLPPDLISSDILSRLQA 1528 (1866)
Q Consensus 1454 ~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~-----~~~~~~l~~~~~~~~~l~~L~~ 1528 (1866)
+|. +..+|.++..+++|++|++++|.+..+|.-+..++.+..+..++..... .....++..+......+....+
T Consensus 100 ~n~-l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~ 178 (1081)
T KOG0618|consen 100 NNR-LQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYN 178 (1081)
T ss_pred cch-hhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhh
Confidence 886 7899999999999999999999999999988888888777766431111 1111222222222222223333
Q ss_pred CcE-eecccCCCCCccccccccccccccCCCCCCEEEeecCCccchH----------Hh-----hccCccccCCcceeEE
Q 000202 1529 LET-LSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVA----------EF-----LKGSAWNNQQLTEFKF 1592 (1866)
Q Consensus 1529 L~~-L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~----------~~-----~~~~~~~~~~L~~l~l 1592 (1866)
|+. |++..+... ...+..+.+|+.|.+..|.+..+. .- .......+.+|+.+.+
T Consensus 179 l~~~ldLr~N~~~----------~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~di 248 (1081)
T KOG0618|consen 179 LTHQLDLRYNEME----------VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDI 248 (1081)
T ss_pred hheeeecccchhh----------hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeec
Confidence 333 555532211 233444444444444433332211 00 0001112234444444
Q ss_pred EEecccccccccccccccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEeccc
Q 000202 1593 VVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISEC 1672 (1866)
Q Consensus 1593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c 1672 (1866)
. -.....+++|+..... .............+|...... ..+.++ ...+..+..++++ ++.+.+|+.|++..
T Consensus 249 s-~n~l~~lp~wi~~~~n----le~l~~n~N~l~~lp~ri~~~-~~L~~l-~~~~nel~yip~~-le~~~sL~tLdL~~- 319 (1081)
T KOG0618|consen 249 S-HNNLSNLPEWIGACAN----LEALNANHNRLVALPLRISRI-TSLVSL-SAAYNELEYIPPF-LEGLKSLRTLDLQS- 319 (1081)
T ss_pred c-hhhhhcchHHHHhccc----ceEecccchhHHhhHHHHhhh-hhHHHH-HhhhhhhhhCCCc-ccccceeeeeeehh-
Confidence 3 2233445555433211 111111112222233222111 001111 1112334444442 45577888888876
Q ss_pred CCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeecc
Q 000202 1673 LKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEY 1752 (1866)
Q Consensus 1673 ~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~ 1752 (1866)
+++...+.... ...-.+|+.|..+.. .+... -......++.|+.|.+.++ .|++- ....+.+...|+.|++++
T Consensus 320 N~L~~lp~~~l--~v~~~~l~~ln~s~n-~l~~l--p~~~e~~~~~Lq~LylanN-~Ltd~-c~p~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 320 NNLPSLPDNFL--AVLNASLNTLNVSSN-KLSTL--PSYEENNHAALQELYLANN-HLTDS-CFPVLVNFKHLKVLHLSY 392 (1081)
T ss_pred ccccccchHHH--hhhhHHHHHHhhhhc-ccccc--ccccchhhHHHHHHHHhcC-ccccc-chhhhccccceeeeeecc
Confidence 55666554210 011122444444321 11110 1222346889999999887 66553 123677889999999998
Q ss_pred ccccceecccCccccccccCCCCcCEEeccCCcccccc-----------------------cc-CCCCCccEEEEEcCcc
Q 000202 1753 CLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANI-----------------------WR-NDWPSLEYISFYGCPK 1808 (1866)
Q Consensus 1753 C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i-----------------------~~-~~lpsLe~L~I~~Cp~ 1808 (1866)
+ .|.++|.. ....|+.|+.|.|++.. |+.| +. ..+|.|+.+++ .|-+
T Consensus 393 N-rL~~fpas------~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDl-S~N~ 463 (1081)
T KOG0618|consen 393 N-RLNSFPAS------KLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDL-SCNN 463 (1081)
T ss_pred c-ccccCCHH------HHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEec-ccch
Confidence 7 56666632 23456666666666532 3222 21 25688999999 5778
Q ss_pred ccccC
Q 000202 1809 LKKMG 1813 (1866)
Q Consensus 1809 L~~lp 1813 (1866)
|...-
T Consensus 464 L~~~~ 468 (1081)
T KOG0618|consen 464 LSEVT 468 (1081)
T ss_pred hhhhh
Confidence 87654
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.1e-15 Score=145.89 Aligned_cols=164 Identities=34% Similarity=0.508 Sum_probs=115.5
Q ss_pred CCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccC
Q 000202 1388 QTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGS 1467 (1866)
Q Consensus 1388 ~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~ 1467 (1866)
.++|.+..+.+...|.|++| .+..+|+.+ ..+.+|++|++++|.|+++|.+|+.|+.|+.|++.-|. +..+|..||.
T Consensus 24 ~~~~gLf~~s~ITrLtLSHN-Kl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs 100 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHN-KLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGS 100 (264)
T ss_pred hhcccccchhhhhhhhcccC-ceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCC
Confidence 35555666667777777777 567777777 66777888888888888888888888888888877776 5677788888
Q ss_pred CCCCcEEEccCCCCC--cCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCCCCcccc
Q 000202 1468 LECLEVLDLRGTEIK--MLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDK 1545 (1866)
Q Consensus 1468 L~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 1545 (1866)
++.|+.||+..|++. .+|..|..++.|+.|+++. .++..+|. .+++|++|+.|.+. ++
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~d------ndfe~lp~------dvg~lt~lqil~lr--------dn 160 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD------NDFEILPP------DVGKLTNLQILSLR--------DN 160 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcC------CCcccCCh------hhhhhcceeEEeec--------cC
Confidence 888888888777776 5677777777777776642 22223333 26677777777766 34
Q ss_pred ccccccccccCCCCCCEEEeecCCccchH
Q 000202 1546 DVKIVITEVSGLTKLSSLSFHFPEIECVA 1574 (1866)
Q Consensus 1546 ~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 1574 (1866)
+.-.++.+++.+++|+.|.+.+|.+.-++
T Consensus 161 dll~lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 161 DLLSLPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred chhhCcHHHHHHHHHHHHhcccceeeecC
Confidence 44456777888888888888877766554
|
|
| >PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.5e-13 Score=133.31 Aligned_cols=91 Identities=33% Similarity=0.600 Sum_probs=77.6
Q ss_pred EEEccccccccCchHHHHHHHHhhCCCceEeeCCCCCCCCCchhHHHHhhhcceEEEEeccCcccchhhHHHHHHHHHHH
Q 000202 18 VFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECK 97 (1866)
Q Consensus 18 vFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~~~~~ 97 (1866)
|||||+++| +.|+.+|+..|+++|+++|+|.++.+|+.+...|.++|++|+..|+++|++|..|+||..|+..+.
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~--- 75 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW--- 75 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH---
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH---
Confidence 899999999 569999999999999999999999999999999999999999999999999999999999998883
Q ss_pred hhCCCEEEEEEEEecCCcc
Q 000202 98 RNYGQIVIPVFYRVDPSHV 116 (1866)
Q Consensus 98 ~~~~~~v~pvf~~v~p~~v 116 (1866)
+.+..|+||. +++.++
T Consensus 76 -~~~~~iipv~--~~~~~~ 91 (102)
T PF13676_consen 76 -KRGKPIIPVR--LDPCEL 91 (102)
T ss_dssp -CTSESEEEEE--CSGGGS
T ss_pred -HCCCEEEEEE--ECCcCC
Confidence 2455899998 555544
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-14 Score=141.30 Aligned_cols=168 Identities=24% Similarity=0.403 Sum_probs=132.4
Q ss_pred CCCccccccCcEEEccCCCCCCCC-CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCC
Q 000202 1368 PPSEEEWTHAKMIFFMDNDLQTLP-GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKC 1446 (1866)
Q Consensus 1368 ~~~~~~~~~l~~l~l~~~~l~~l~-~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~ 1446 (1866)
.+....+++.+.|.+++|.+..+| ....+.+|++|++++| .++.+|.++ +.|+.|+.|+++-|++..+|..++.++.
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPA 103 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhh-hhchhhhheecchhhhhcCccccCCCch
Confidence 344556677788888999888776 4678889999999866 788899888 6789999999999999999999999999
Q ss_pred CcEEecccccCc-ccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhc
Q 000202 1447 LQILILRDCDFL-FVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSR 1525 (1866)
Q Consensus 1447 L~~L~L~~~~~~-~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~ 1525 (1866)
|+.|||.+|... ..+|..|-.+..|+.|.++.|.+.-+|..+++|++||.|.+. ....+.+|. .++.
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lr------dndll~lpk------eig~ 171 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLR------DNDLLSLPK------EIGD 171 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeec------cCchhhCcH------HHHH
Confidence 999999887754 467888888888999999999999999999999999998763 344555554 4788
Q ss_pred cccCcEeecccCCCCCccccccccccccccCC
Q 000202 1526 LQALETLSIDVHPGDKRWDKDVKIVITEVSGL 1557 (1866)
Q Consensus 1526 L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l 1557 (1866)
|+.|++|++.++. ...++.++..+
T Consensus 172 lt~lrelhiqgnr--------l~vlppel~~l 195 (264)
T KOG0617|consen 172 LTRLRELHIQGNR--------LTVLPPELANL 195 (264)
T ss_pred HHHHHHHhcccce--------eeecChhhhhh
Confidence 8889988887433 33455555544
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.9e-10 Score=144.68 Aligned_cols=109 Identities=27% Similarity=0.277 Sum_probs=81.7
Q ss_pred CcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEeccccc
Q 000202 1377 AKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCD 1456 (1866)
Q Consensus 1377 l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~ 1456 (1866)
...|+++++.+..+|... .++|+.|++.+| .+..+|. .+++|++|+|++|.++.+|.. ..+|+.|+|++|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N-~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCC-cCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 456888888888888532 247888888877 5777774 257899999999988888853 4678888998887
Q ss_pred CcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceecccc
Q 000202 1457 FLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1457 ~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~ 1501 (1866)
+..+|.. +.+|+.|++++|.++.+|.. +++|+.|++++
T Consensus 274 -L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~ 311 (788)
T PRK15387 274 -LTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD 311 (788)
T ss_pred -hhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCC
Confidence 4566653 35678888999988888863 46788888765
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.8e-10 Score=144.09 Aligned_cols=90 Identities=20% Similarity=0.207 Sum_probs=62.1
Q ss_pred cccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEcc
Q 000202 1398 NLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLR 1477 (1866)
Q Consensus 1398 ~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~ 1477 (1866)
.-..|+|+.| .+..+|+.+. .+|+.|++++|+++.+|.. +++|++|+|++|.+ ..+|.. ..+|+.|+++
T Consensus 202 ~~~~LdLs~~-~LtsLP~~l~---~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~L-tsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGES-GLTTLPDCLP---AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQL-TSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCC-CCCcCCcchh---cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCcc-CcccCc---ccccceeecc
Confidence 4556788766 6667887663 4788888888888888753 57788888888864 456643 4577888888
Q ss_pred CCCCCcCChhhcCCCccceecccc
Q 000202 1478 GTEIKMLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1478 ~~~i~~lp~~i~~L~~L~~L~l~~ 1501 (1866)
+|.++.+|... ++|+.|++.+
T Consensus 271 ~N~L~~Lp~lp---~~L~~L~Ls~ 291 (788)
T PRK15387 271 SNPLTHLPALP---SGLCKLWIFG 291 (788)
T ss_pred CCchhhhhhch---hhcCEEECcC
Confidence 88887777533 4455665543
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.6e-10 Score=147.90 Aligned_cols=114 Identities=27% Similarity=0.398 Sum_probs=80.2
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~ 1455 (1866)
+...|.+.++.+..+|... .++|+.|+|++| .+..+|..++ .+|++|+|++|.++.+|..+. .+|+.|+|++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N-~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNN-ELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCC-CCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 3456777777777777422 246888888776 5667777653 478888888888888877654 46888888888
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceecccc
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~ 1501 (1866)
.+ ..+|..+. .+|+.|++++|.++.+|..+. ++|++|++++
T Consensus 252 ~L-~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 252 RI-TELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD 292 (754)
T ss_pred cc-CcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC
Confidence 74 46776654 478888888888887776553 3677777654
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.1e-09 Score=139.27 Aligned_cols=165 Identities=25% Similarity=0.343 Sum_probs=119.7
Q ss_pred ccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEeccc
Q 000202 1375 THAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRD 1454 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 1454 (1866)
++++.|++++|.+..+|... +.+|+.|++++| .+..+|..+. .+|+.|+|++|.+..+|..+. .+|++|+|++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N-~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPENL-QGNIKTLYANSN-QLTSIPATLP---DTIQEMELSINRITELPERLP--SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCcCChhh-ccCCCEEECCCC-ccccCChhhh---ccccEEECcCCccCcCChhHh--CCCCEEECcC
Confidence 46889999999999888532 368999999987 5778887653 579999999999999998775 5899999998
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeec
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l 1534 (1866)
|++ ..+|..+. .+|++|++++|.++.+|..+. ++|++|+++++. +..+|.. -.++|+.|++
T Consensus 272 N~L-~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~------Lt~LP~~--------l~~sL~~L~L 332 (754)
T PRK15370 272 NKI-SCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS------LTALPET--------LPPGLKTLEA 332 (754)
T ss_pred Ccc-CccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc------cccCCcc--------ccccceeccc
Confidence 875 47887664 589999999999999887654 467888776531 1122221 1246777877
Q ss_pred ccCCCCCccccccccccccccCCCCCCEEEeecCCccchHH
Q 000202 1535 DVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAE 1575 (1866)
Q Consensus 1535 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 1575 (1866)
+.|.. ..++..+ .++|+.|+++.|.+..++.
T Consensus 333 s~N~L--------t~LP~~l--~~sL~~L~Ls~N~L~~LP~ 363 (754)
T PRK15370 333 GENAL--------TSLPASL--PPELQVLDVSKNQITVLPE 363 (754)
T ss_pred cCCcc--------ccCChhh--cCcccEEECCCCCCCcCCh
Confidence 75432 2233333 2688899998888776543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.4e-08 Score=136.02 Aligned_cols=274 Identities=14% Similarity=0.185 Sum_probs=168.8
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC-CCHHHHHHHHHHHhccCCCC-------------cc
Q 000202 997 VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY-WNTRKIQKQVLRQLSLHCKD-------------RE 1062 (1866)
Q Consensus 997 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~-------------~~ 1062 (1866)
...+++.|.|++|.||||++.+... .++.++|+++... .+...+...++..+...... ..
T Consensus 30 ~~~~~~~v~apaG~GKTtl~~~~~~------~~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 103 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLISQWAA------GKNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYA 103 (903)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHH------hCCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcC
Confidence 3567899999999999999999853 2336889998644 45566777777777421111 01
Q ss_pred CHHHHHHHHHHHhC--CCcEEEEEeCCCCcc--c-hhhhcCCCCCCCCCcEEEEccCChhhhc--cC-CCCcEEEec---
Q 000202 1063 TDAQVAEKLWQVLN--GEKFLLLLDDVWEQI--D-LEAVGIPVPGSENGSKIFMASRELDVCR--NM-DVNMVVKLE--- 1131 (1866)
Q Consensus 1063 ~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~--~-~~~l~~~l~~~~~gs~IivTTR~~~v~~--~~-~~~~~~~l~--- 1131 (1866)
+.......+...+. +.+++|||||+.... . .+.+...+.....+.++|||||...-.. .. ......++.
T Consensus 104 ~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~ 183 (903)
T PRK04841 104 SLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQ 183 (903)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHh
Confidence 22233333444443 678999999997632 1 1222222223345678889999742211 11 112344555
Q ss_pred -CCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHhhhCCCCccccccchhhH
Q 000202 1132 -TLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHASRKFSLPITIEECCTEDL 1210 (1866)
Q Consensus 1132 -~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i 1210 (1866)
+|+.+|+.++|....+.... .+.+..|.+.|+|.|+++..++..+....... ......+. ......+
T Consensus 184 l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~------~~~~~~~ 251 (903)
T PRK04841 184 LAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARRLA------GINASHL 251 (903)
T ss_pred CCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhhc------CCCchhH
Confidence 99999999999876654322 23456799999999999999988776432100 00011110 0012245
Q ss_pred HHHHHH-hHhccCCcchhHHHHhhcCCCCCccccHHHHHHHHHHcCccchhhHhHHHhHHHHHHHHHHhhhhhcc--ccc
Q 000202 1211 IELLKF-SFDQLKDHDVKSCFLHCSLFPEDREVSIVEFIDYCIQEGIIVGTLANAHKRGHQIVDVLVDASLLLIN--EVH 1287 (1866)
Q Consensus 1211 ~~~l~~-Sy~~L~~~~lk~cfly~s~Fp~~~~i~~~~Li~~W~aeG~i~~~~~~~~~~~~~~~~~L~~~sll~~~--~~~ 1287 (1866)
...+.- -|+.||++ .+..++..|+++ .+. ..+...- -| ...+...++.|.+.+++... +..
T Consensus 252 ~~~l~~~v~~~l~~~-~~~~l~~~a~~~---~~~-~~l~~~l--~~---------~~~~~~~L~~l~~~~l~~~~~~~~~ 315 (903)
T PRK04841 252 SDYLVEEVLDNVDLE-TRHFLLRCSVLR---SMN-DALIVRV--TG---------EENGQMRLEELERQGLFIQRMDDSG 315 (903)
T ss_pred HHHHHHHHHhcCCHH-HHHHHHHhcccc---cCC-HHHHHHH--cC---------CCcHHHHHHHHHHCCCeeEeecCCC
Confidence 555433 37899987 899999999997 333 2222210 01 12346788999999997532 233
Q ss_pred CcccchhHHHHHHHHHh
Q 000202 1288 NSIRMPGLMKDLAFGIL 1304 (1866)
Q Consensus 1288 ~~~~mhdlv~dla~~i~ 1304 (1866)
..|+.|++++++...-+
T Consensus 316 ~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 316 EWFRYHPLFASFLRHRC 332 (903)
T ss_pred CEEehhHHHHHHHHHHH
Confidence 47889999999987654
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.2e-08 Score=121.82 Aligned_cols=249 Identities=16% Similarity=0.145 Sum_probs=142.4
Q ss_pred cCCCceeehhhHHHHHHhhhcC--CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTG--SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKE 261 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~--~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1866)
.++.|+||+.++++|...|... +.....+.|+|.+|+|||++++.+++......+...|+..... .......++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~--~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ--IDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC--cCCCHHHHHHH
Confidence 4568999999999999998542 2234567899999999999999999977665422223322111 12233566677
Q ss_pred HHHHHhccccccCccch--hHHHHHHHhh--cCcEEEEEecCCCH------HHHHHHhhccCCCCCCCE--EEEEccccc
Q 000202 262 LLSKLLNDRNVKNFQNI--SVNFQSKRLA--RKKVLIVFDDVNHP------RQIELLIGRLDRFASGSQ--VIITTRDKQ 329 (1866)
Q Consensus 262 ll~~~~~~~~~~~~~~~--~~~~l~~~L~--~k~~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~--IiiTTR~~~ 329 (1866)
++.++............ ....+.+.+. ++.++||||+++.. +.+..+....... ++++ +|.++.+..
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEECCcc
Confidence 77776542211111111 1134444443 45689999999863 2344444332222 2334 666666554
Q ss_pred hhccCc-------cceeeecCCCCHHHHHHHHHhhc---CCCCCCChh-HHHHHHHHHHHhCCCcceeeeecccc-----
Q 000202 330 VLTNCE-------VDHIYQMKELVHADAHKLFTQCA---FRGDHLDAG-YTELAHKALKYAQGVPLALKVLGCYL----- 393 (1866)
Q Consensus 330 v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~-~~~~~~~i~~~~~GlPLAl~~~g~~L----- 393 (1866)
+..... ....+.+++++.++..+++..++ |......++ .+.+++......|..+.|+.++-...
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 332221 12467899999999999998765 222222222 22222322222455777766653221
Q ss_pred cC---CCHHHHHHHHHHhccCCCchhhhhhhcccCCCChhhHHHHHHHHHHh
Q 000202 394 CG---RSKEEWESAMRKLEIVPHMEIQEVLKISYDSLDDSQKRMHDLLRAMG 442 (1866)
Q Consensus 394 ~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~~~~l~~~~ 442 (1866)
++ -+.+....+++.+. .....-.+..||.++|.++..+...+
T Consensus 265 ~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~ 309 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLL 309 (394)
T ss_pred cCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 11 14455666665552 12234457899999998877665443
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.9e-10 Score=128.74 Aligned_cols=145 Identities=26% Similarity=0.433 Sum_probs=100.4
Q ss_pred EEccCCCCCCCCCCCCC-CcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEecccccC
Q 000202 1380 IFFMDNDLQTLPGRPSC-PNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRDCDF 1457 (1866)
Q Consensus 1380 l~l~~~~l~~l~~~~~~-~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~ 1457 (1866)
.+..+..+.++|. .+ +.-..+.|..| .++.+|+..|+.+++||.||||.|.|+.+ |..+..|.+|-.|-+.+++.
T Consensus 51 VdCr~~GL~eVP~--~LP~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 51 VDCRGKGLTEVPA--NLPPETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EEccCCCcccCcc--cCCCcceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 4555566666662 22 23455677777 78888888888888899999998888855 67888888888888777555
Q ss_pred cccCCc-cccCCCCCcEEEccCCCCCcCCh-hhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecc
Q 000202 1458 LFVLPP-EVGSLECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSID 1535 (1866)
Q Consensus 1458 ~~~lP~-~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~ 1535 (1866)
+..+|+ .|++|..|+.|.+.-|.+..++. .+..|++|..|.++.. ... .+....+..+..++.+.+.
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn------~~q-----~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN------KIQ-----SICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch------hhh-----hhccccccchhccchHhhh
Confidence 677775 57888888888888888886654 4778888887776431 111 1222345666777777666
Q ss_pred cCC
Q 000202 1536 VHP 1538 (1866)
Q Consensus 1536 ~~~ 1538 (1866)
.++
T Consensus 197 ~np 199 (498)
T KOG4237|consen 197 QNP 199 (498)
T ss_pred cCc
Confidence 433
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.6e-09 Score=120.14 Aligned_cols=195 Identities=18% Similarity=0.185 Sum_probs=98.6
Q ss_pred ceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH------HHH
Q 000202 188 LIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL------RKE 261 (1866)
Q Consensus 188 ~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l------~~~ 261 (1866)
|+||+.++++|.+++..+ ..+.+.|+|..|+|||+|++++.+.....-..++|+........ .....+ ...
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 799999999999999864 35679999999999999999999977543334455443322111 111111 111
Q ss_pred HHHHHhccccccC----------ccchhHHHHHHHhh--cCcEEEEEecCCCHH-----------HHHHHhhccCCCCCC
Q 000202 262 LLSKLLNDRNVKN----------FQNISVNFQSKRLA--RKKVLIVFDDVNHPR-----------QIELLIGRLDRFASG 318 (1866)
Q Consensus 262 ll~~~~~~~~~~~----------~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~-----------~~~~l~~~~~~~~~g 318 (1866)
+...+........ ........+.+.+. +++++||+||++... .+..+........+.
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 1111211111000 00111122333332 346999999996543 122233332223334
Q ss_pred CEEEEEccccchhcc--------CccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceee
Q 000202 319 SQVIITTRDKQVLTN--------CEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALK 387 (1866)
Q Consensus 319 s~IiiTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 387 (1866)
+.|+++|. ..+... .+....+.+++|+.+++.+++....-..... +...+..++|+..+||+|..|.
T Consensus 158 ~~v~~~S~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 158 SIVITGSS-DSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp EEEEEESS-HHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred eEEEECCc-hHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHh
Confidence 44444444 323222 2233458999999999999998764222111 2235567999999999998653
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.6e-08 Score=135.30 Aligned_cols=241 Identities=13% Similarity=0.097 Sum_probs=143.2
Q ss_pred ccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHH
Q 000202 181 FQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 181 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
+|....++|-|..-++.+.. ....+++.|.|++|.||||++.++.++. +.++|+...... .....+..
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~l~~~d---~~~~~f~~ 76 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYSLDESD---NQPERFAS 76 (903)
T ss_pred CCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEecCccc---CCHHHHHH
Confidence 55666788999876666542 2357899999999999999999988643 357888543331 22233444
Q ss_pred HHHHHHhccccc--c-------Ccc-chhHHH---HHHHh-h-cCcEEEEEecCCCH---HHHHHHhhccCCCCCCCEEE
Q 000202 261 ELLSKLLNDRNV--K-------NFQ-NISVNF---QSKRL-A-RKKVLIVFDDVNHP---RQIELLIGRLDRFASGSQVI 322 (1866)
Q Consensus 261 ~ll~~~~~~~~~--~-------~~~-~~~~~~---l~~~L-~-~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~Ii 322 (1866)
.++..+...... . ... ...... +...+ . +.+++|||||+... ...+.+...+....++.++|
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv 156 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLV 156 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEE
Confidence 444444211110 0 000 000111 22222 2 67999999999642 22223322233345677899
Q ss_pred EEccccchhcc--C-ccceeeecC----CCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecccccC
Q 000202 323 ITTRDKQVLTN--C-EVDHIYQMK----ELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCG 395 (1866)
Q Consensus 323 iTTR~~~v~~~--~-~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~ 395 (1866)
||||...-... . ......++. +|+.+|+.+||...... .. ..+.+.++.+.|+|.|+++..++..+.+
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~--~~---~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS--PI---EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC--CC---CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 99998532211 1 012345555 99999999999866522 11 2455788999999999999988877654
Q ss_pred CCHHHHHHHHHHhccCCCchhhhhhhc-ccCCCChhhHHHHHHHH
Q 000202 396 RSKEEWESAMRKLEIVPHMEIQEVLKI-SYDSLDDSQKRMHDLLR 439 (1866)
Q Consensus 396 ~~~~~w~~~l~~l~~~~~~~i~~~l~~-Sy~~L~~~~k~~~~~l~ 439 (1866)
.... -......+...+...+.+.+.- -|+.||++.+.++..++
T Consensus 232 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a 275 (903)
T PRK04841 232 NNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCS 275 (903)
T ss_pred CCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 3210 0111222222223346555433 37899999999998888
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.7e-08 Score=106.02 Aligned_cols=144 Identities=19% Similarity=0.258 Sum_probs=85.2
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhcccc-----ceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHH
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFE-----GSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQS 284 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~ 284 (1866)
|++.|+|.+|+||||+++.++.++..... ...++...+..........+...+......... ........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA-----PIEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh-----hhHHHHHH
Confidence 57899999999999999999987665542 223333333322222112333333333222111 11111111
Q ss_pred HHhhcCcEEEEEecCCCHHH---------HHHHhh-ccC-CCCCCCEEEEEccccch---hccCccceeeecCCCCHHHH
Q 000202 285 KRLARKKVLIVFDDVNHPRQ---------IELLIG-RLD-RFASGSQVIITTRDKQV---LTNCEVDHIYQMKELVHADA 350 (1866)
Q Consensus 285 ~~L~~k~~LlVlDdv~~~~~---------~~~l~~-~~~-~~~~gs~IiiTTR~~~v---~~~~~~~~~~~l~~L~~~ea 350 (1866)
-..+.++++||||++++... +..++. .+. ...++.++|||||.... .........+++.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 22367899999999975322 222221 122 13568999999998766 22333446899999999999
Q ss_pred HHHHHhhc
Q 000202 351 HKLFTQCA 358 (1866)
Q Consensus 351 ~~Lf~~~a 358 (1866)
.+++.+..
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99987653
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.3e-09 Score=120.39 Aligned_cols=124 Identities=24% Similarity=0.323 Sum_probs=108.1
Q ss_pred CcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccC-CCCCCCC-hhhcCCCCCcEEec
Q 000202 1377 AKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSK-TRIKSLP-ETLVNLKCLQILIL 1452 (1866)
Q Consensus 1377 l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~-~~i~~lp-~~i~~L~~L~~L~L 1452 (1866)
...+.+..|.|+.+| .|..+++||.|+|++| .+..|.+..|..++.|..|-+-+ |+|+.+| ..+++|..||.|.+
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 356788999999999 4789999999999988 78888888889899887776655 8999999 57899999999999
Q ss_pred ccccCcccCCccccCCCCCcEEEccCCCCCcCCh-hhcCCCccceecccc
Q 000202 1453 RDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1453 ~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~ 1501 (1866)
.-|++.......+..|++|..|.+-.|.+..++. .+..+..++++++..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhc
Confidence 9999777777889999999999999999999988 588899999988754
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-09 Score=128.87 Aligned_cols=177 Identities=29% Similarity=0.429 Sum_probs=145.3
Q ss_pred cccCcEEEccCCCCCCCC-CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEec
Q 000202 1374 WTHAKMIFFMDNDLQTLP-GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILIL 1452 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~~l~-~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L 1452 (1866)
+..-...+++.|.+.++| ....|..|..|.|..| .+..+|..+ +++..|.+|||+.|.++.+|..+|.|+ |+.|.+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 334456788899999999 4567788999999888 477888887 779999999999999999999999988 999999
Q ss_pred ccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEe
Q 000202 1453 RDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETL 1532 (1866)
Q Consensus 1453 ~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L 1532 (1866)
++|+ ++.+|..++.+..|.+||.+.|.+..+|..++.|.+|+.|.+.. +....+|.. +..| .|..|
T Consensus 151 sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR------n~l~~lp~E------l~~L-pLi~l 216 (722)
T KOG0532|consen 151 SNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR------NHLEDLPEE------LCSL-PLIRL 216 (722)
T ss_pred ecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh------hhhhhCCHH------HhCC-ceeee
Confidence 9998 78999999999999999999999999999999999999998743 334444442 3322 36677
Q ss_pred ecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHH
Q 000202 1533 SIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAE 1575 (1866)
Q Consensus 1533 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 1575 (1866)
+++ +|.+..++..+.++++|+.|-|..|.+..-+.
T Consensus 217 DfS--------cNkis~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 217 DFS--------CNKISYLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred ecc--------cCceeecchhhhhhhhheeeeeccCCCCCChH
Confidence 877 45566789999999999999999998876543
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.2e-07 Score=105.89 Aligned_cols=180 Identities=17% Similarity=0.171 Sum_probs=111.2
Q ss_pred cCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHH-
Q 000202 996 DVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQV- 1074 (1866)
Q Consensus 996 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~- 1074 (1866)
..+..++.|+|++|+|||||++.+++..... .+ ..+|+ +....+..++++.|+..++..... .+.......+.+.
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l 115 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFL 115 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHH
Confidence 3445689999999999999999997653321 11 12233 333457788899999888765332 2222223333322
Q ss_pred ----hCCCcEEEEEeCCCCc--cchhhhcCCC---CCCCCCcEEEEccCChhhhccC----------CCCcEEEecCCCh
Q 000202 1075 ----LNGEKFLLLLDDVWEQ--IDLEAVGIPV---PGSENGSKIFMASRELDVCRNM----------DVNMVVKLETLSM 1135 (1866)
Q Consensus 1075 ----L~~kr~LlVlDdv~~~--~~~~~l~~~l---~~~~~gs~IivTTR~~~v~~~~----------~~~~~~~l~~L~~ 1135 (1866)
..+++++||+||++.. ..++.+.... ........|++|.... ..... .....+.+++|+.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 3678899999999874 3455443211 1112223445554432 21111 1134678999999
Q ss_pred HHHHHHHHHHhcCCC---CCchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 000202 1136 KDAWELFCKEVGGII---QSPDIHLYARAIVKGCCGLPLLTIVTAKAL 1180 (1866)
Q Consensus 1136 ~~a~~Lf~~~~~~~~---~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L 1180 (1866)
+|..+++...+.... ...-..+..+.|.+.|+|.|..|..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999887653221 111124678889999999999999888776
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-06 Score=108.42 Aligned_cols=286 Identities=15% Similarity=0.130 Sum_probs=159.8
Q ss_pred cchhhHHHHHHHHHhc----cCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 980 VNYTQRNVRKIFRYVN----DVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+.+|+++++++...+. ......+.|+|++|+|||++++.+++........-..+++++....+...++..|+.++.
T Consensus 32 l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~ 111 (394)
T PRK00411 32 LPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLF 111 (394)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhc
Confidence 5688888888888772 334456789999999999999999764332222234567777777788899999999987
Q ss_pred cCCC--CccCHHHHHHHHHHHhC--CCcEEEEEeCCCCcc------chhhhcCCCCCCCCCcE--EEEccCChhhhccCC
Q 000202 1056 LHCK--DRETDAQVAEKLWQVLN--GEKFLLLLDDVWEQI------DLEAVGIPVPGSENGSK--IFMASRELDVCRNMD 1123 (1866)
Q Consensus 1056 ~~~~--~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~------~~~~l~~~l~~~~~gs~--IivTTR~~~v~~~~~ 1123 (1866)
.... ...+..+....+.+.+. ++..+||||+++... .+..+...+.. ..+++ ||.+++...+.....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~ 190 (394)
T PRK00411 112 GHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILD 190 (394)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcC
Confidence 5221 22245666677777775 456899999998632 23333222221 12333 566665544322211
Q ss_pred -------CCcEEEecCCChHHHHHHHHHHhcCC----C-CCchHHHHHHHHHHHcCCChHHHHHHHHHh--h--C-C--C
Q 000202 1124 -------VNMVVKLETLSMKDAWELFCKEVGGI----I-QSPDIHLYARAIVKGCCGLPLLTIVTAKAL--A--G-E--R 1184 (1866)
Q Consensus 1124 -------~~~~~~l~~L~~~~a~~Lf~~~~~~~----~-~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L--~--~-~--~ 1184 (1866)
....+.+++++.++..+++..++... . ....++.+++......|..+.|+.++-.+. + . . -
T Consensus 191 ~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I 270 (394)
T PRK00411 191 PRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKV 270 (394)
T ss_pred HHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCc
Confidence 12467899999999999998776321 1 122233344444343566777777664432 1 1 1 1
Q ss_pred CHHHHHHHhhhCCCCccccccchhhHHHHHHHhHhccCCcchhHHHHhhc--CCCC-CccccHHHHHHH--HHHcCccch
Q 000202 1185 NVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCS--LFPE-DREVSIVEFIDY--CIQEGIIVG 1259 (1866)
Q Consensus 1185 ~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~lk~cfly~s--~Fp~-~~~i~~~~Li~~--W~aeG~i~~ 1259 (1866)
+.+....+.+.. -.....-.+..||.+ +..|++.- .... ...+...++... .+++.+-..
T Consensus 271 ~~~~v~~a~~~~-------------~~~~~~~~~~~L~~~--~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~ 335 (394)
T PRK00411 271 TEEDVRKAYEKS-------------EIVHLSEVLRTLPLH--EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE 335 (394)
T ss_pred CHHHHHHHHHHH-------------HHHHHHHHHhcCCHH--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC
Confidence 334444443321 012234457899876 55555532 1221 123444444422 122111000
Q ss_pred hhHhHHHhHHHHHHHHHHhhhhhc
Q 000202 1260 TLANAHKRGHQIVDVLVDASLLLI 1283 (1866)
Q Consensus 1260 ~~~~~~~~~~~~~~~L~~~sll~~ 1283 (1866)
.-.......++..|.+.+++..
T Consensus 336 --~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 336 --PRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred --cCcHHHHHHHHHHHHhcCCeEE
Confidence 0011234557777777777764
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-06 Score=109.24 Aligned_cols=248 Identities=17% Similarity=0.170 Sum_probs=136.7
Q ss_pred cCCCceeehhhHHHHHHhhhc--CCCCcEEEEEEecCCCchhHHHHHHHHhhhcccc------ceEEEEeeccccccccH
Q 000202 184 ESKDLIGVEWRIKEIESLLRT--GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFE------GSYFACNVRAAEETGRL 255 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~--~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~~~~~~~~~~~~~~~ 255 (1866)
.++.|+||+.++++|...|.. .+.....+.|+|++|+|||++++++++.+....+ ..+|+... .....
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~----~~~~~ 88 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ----ILDTL 88 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC----CCCCH
Confidence 345899999999999999874 1223456899999999999999999987654332 12333321 11223
Q ss_pred HHHHHHHHHHHhc--ccc-ccCccch-hHHHHHHHh--hcCcEEEEEecCCCH-----HHHHHHhhcc--CCC-CCCCEE
Q 000202 256 DDLRKELLSKLLN--DRN-VKNFQNI-SVNFQSKRL--ARKKVLIVFDDVNHP-----RQIELLIGRL--DRF-ASGSQV 321 (1866)
Q Consensus 256 ~~l~~~ll~~~~~--~~~-~~~~~~~-~~~~l~~~L--~~k~~LlVlDdv~~~-----~~~~~l~~~~--~~~-~~gs~I 321 (1866)
..++..++.++.. ... ....... ....+.+.+ .+++++||||+++.. +.+..+.... ... +....+
T Consensus 89 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~l 168 (365)
T TIGR02928 89 YQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGV 168 (365)
T ss_pred HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEE
Confidence 4566666666642 111 0001100 112333444 356789999999864 1233333221 111 123345
Q ss_pred EEEccccchhccCc-------cceeeecCCCCHHHHHHHHHhhcC---CCCCCChhHHHHHHHHHHHhCCCcc-eeeeec
Q 000202 322 IITTRDKQVLTNCE-------VDHIYQMKELVHADAHKLFTQCAF---RGDHLDAGYTELAHKALKYAQGVPL-ALKVLG 390 (1866)
Q Consensus 322 iiTTR~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~GlPL-Al~~~g 390 (1866)
|.+|.......... ....+.+++.+.+|..+++..++- ......++..+.+.+++....|.|- |+.++-
T Consensus 169 I~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~ 248 (365)
T TIGR02928 169 IGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLR 248 (365)
T ss_pred EEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 55565443321111 124678999999999999987752 2222333334455667777778773 332221
Q ss_pred ccc-----cC---CCHHHHHHHHHHhccCCCchhhhhhhcccCCCChhhHHHHHHHHHHh
Q 000202 391 CYL-----CG---RSKEEWESAMRKLEIVPHMEIQEVLKISYDSLDDSQKRMHDLLRAMG 442 (1866)
Q Consensus 391 ~~L-----~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~~~~l~~~~ 442 (1866)
... .+ -+.+..+.+++.+. .....-+...||.+++.++..+..+.
T Consensus 249 ~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~ 301 (365)
T TIGR02928 249 VAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLA 301 (365)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 111 11 13344444444432 12233456789998887777665443
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.7e-08 Score=104.64 Aligned_cols=122 Identities=30% Similarity=0.299 Sum_probs=35.1
Q ss_pred cccCcEEEccCCCCCCCCCCC-CCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhh-cCCCCCcEEe
Q 000202 1374 WTHAKMIFFMDNDLQTLPGRP-SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETL-VNLKCLQILI 1451 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~~l~~~~-~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i-~~L~~L~~L~ 1451 (1866)
...++.|++.+|.+..+..+. .+.+|+.|+|++| .+..++. +..+++|++|++++|+|+.+++.+ ..+++|+.|+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N-~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNN-QITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccchhhhhcCCCEEECCCC-CCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 334566666666666655544 3556666666655 4444432 244566666666666666665444 2466666666
Q ss_pred cccccCcccCC--ccccCCCCCcEEEccCCCCCcCCh----hhcCCCccceecc
Q 000202 1452 LRDCDFLFVLP--PEVGSLECLEVLDLRGTEIKMLPK----EIGKLTSLRYLTV 1499 (1866)
Q Consensus 1452 L~~~~~~~~lP--~~i~~L~~L~~L~l~~~~i~~lp~----~i~~L~~L~~L~l 1499 (1866)
|++|.+.. +- ..+..+++|++|++.+|++...+. -+..+++|+.|+-
T Consensus 95 L~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSNNKISD-LNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TTS---S-CCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCcCCC-hHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 66665321 11 234455666666666666554332 1444555555544
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-07 Score=109.49 Aligned_cols=193 Identities=17% Similarity=0.209 Sum_probs=98.8
Q ss_pred cchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHH---------HH
Q 000202 980 VNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQK---------QV 1050 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~---------~i 1050 (1866)
|.||++++++|.+.+.....+.+.|+|..|+|||+|++.+.+..... .+ ..+|+...+..+...+.. .+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~-~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEK-GY-KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhc-CC-cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 56899999999999987767889999999999999999996533211 11 334444433332222111 11
Q ss_pred HHHhccCCC----------CccCHHHHHHHHHHHhC--CCcEEEEEeCCCCcc-ch---h----hh---cCCCCCCCCCc
Q 000202 1051 LRQLSLHCK----------DRETDAQVAEKLWQVLN--GEKFLLLLDDVWEQI-DL---E----AV---GIPVPGSENGS 1107 (1866)
Q Consensus 1051 ~~~l~~~~~----------~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~-~~---~----~l---~~~l~~~~~gs 1107 (1866)
...+..... ...........+.+.+. +++++||+||+.... .. . .+ ...+....+ -
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~ 157 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN-V 157 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT-E
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC-c
Confidence 122211100 11122223333444443 345999999997644 11 1 11 112222233 3
Q ss_pred EEEEccCChhhhcc--------CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 000202 1108 KIFMASRELDVCRN--------MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIV 1175 (1866)
Q Consensus 1108 ~IivTTR~~~v~~~--------~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~ 1175 (1866)
.+|+++.+..+... .+....+.+++|+.+++++++...+.....-+.-.+...+|...+||.|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 44455444444322 122345999999999999999987654411112244568899999999987653
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.9e-07 Score=107.97 Aligned_cols=144 Identities=22% Similarity=0.439 Sum_probs=93.1
Q ss_pred ccCCCceeehhhHH---HHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHH
Q 000202 183 SESKDLIGVEWRIK---EIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~---~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
...+++||.+..+. -|..++.. ..+....+||++|+||||||+.++......|... . .. .....++.
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~--~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~---s--Av---~~gvkdlr 90 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEA--GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL---S--AV---TSGVKDLR 90 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhc--CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEe---c--cc---cccHHHHH
Confidence 33455666665552 24455543 3466788999999999999999999777766421 1 11 11112221
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEE--EccccchhccC-
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVII--TTRDKQVLTNC- 334 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~~~~- 334 (1866)
+++. +.-+.+..+++.+|++|.|. +..|-+.|++.. ..|.-|+| ||.|+...-..
T Consensus 91 -~i~e----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 91 -EIIE----------------EARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPA 150 (436)
T ss_pred -HHHH----------------HHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHH
Confidence 1111 11223346899999999997 677778887664 45777776 77776432211
Q ss_pred --ccceeeecCCCCHHHHHHHHHh
Q 000202 335 --EVDHIYQMKELVHADAHKLFTQ 356 (1866)
Q Consensus 335 --~~~~~~~l~~L~~~ea~~Lf~~ 356 (1866)
....++++++|+.+|-.+++.+
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHH
Confidence 2357899999999999999887
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.6e-07 Score=110.42 Aligned_cols=227 Identities=17% Similarity=0.191 Sum_probs=121.7
Q ss_pred CCceeehhhHHHHHHhhhcC---CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 186 KDLIGVEWRIKEIESLLRTG---SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~---~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
.+|||++..+++|..++... ......+.++|++|+|||+||++++++....+. ....... .....+ ...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~---~~~~~l-~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPAL---EKPGDL-AAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccchh---cCchhH-HHH
Confidence 47999999999999888631 223456889999999999999999997754331 1111100 001111 111
Q ss_pred HHHHhccc-----cccCccchhHHHHHHHhhcCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccchhccC--c
Q 000202 263 LSKLLNDR-----NVKNFQNISVNFQSKRLARKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNC--E 335 (1866)
Q Consensus 263 l~~~~~~~-----~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~--~ 335 (1866)
+..+.... +.........+.+...+.+.+..+|+|+..+..++.... .+.+-|..|||...+.... .
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDL------PPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecC------CCeEEEEecCCccccCHHHHhh
Confidence 11111100 000001111123333444445555555544433332211 2245566677765443321 1
Q ss_pred cceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecccccCCCHHHHHHHHHHhcc--CCC
Q 000202 336 VDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEI--VPH 413 (1866)
Q Consensus 336 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~~~~~w~~~l~~l~~--~~~ 413 (1866)
...++++++++.+|..+++.+.+.... ..-.++....|++.|+|.|-.+..++..+ |... ..... ...
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~--~~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a-~~~~~~~it~ 219 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLN--VEIEPEAALEIARRSRGTPRIANRLLRRV-------RDFA-QVRGQKIINR 219 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHH-HHcCCCCcCH
Confidence 135689999999999999998774322 12235667889999999995543333221 1111 00110 010
Q ss_pred ---chhhhhhhcccCCCChhhHHHHH
Q 000202 414 ---MEIQEVLKISYDSLDDSQKRMHD 436 (1866)
Q Consensus 414 ---~~i~~~l~~Sy~~L~~~~k~~~~ 436 (1866)
......+...|..|++.++.++.
T Consensus 220 ~~v~~~l~~l~~~~~~l~~~~~~~L~ 245 (305)
T TIGR00635 220 DIALKALEMLMIDELGLDEIDRKLLS 245 (305)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 11223367778899998777555
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-07 Score=114.65 Aligned_cols=233 Identities=14% Similarity=0.150 Sum_probs=121.8
Q ss_pred cccCCCceeehhhHHHHHHhhhc---CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRT---GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~---~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
|....+|+|++..++.+..++.. .......+.|+|++|+||||||+.+++.....+. .......... .-
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~----~~~~~~~~~~----~~ 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR----ITSGPALEKP----GD 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE----EEecccccCh----HH
Confidence 34557899999999999888863 2233567889999999999999999997754331 1111110011 11
Q ss_pred HHHHHHHHhcccc--c---cCccchhHHHHHHHhhcCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccchhcc
Q 000202 259 RKELLSKLLNDRN--V---KNFQNISVNFQSKRLARKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTN 333 (1866)
Q Consensus 259 ~~~ll~~~~~~~~--~---~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~ 333 (1866)
+..++..+....- . ........+.+...+.+.+..+|+|+..+..++... ..+.+-|..|||...+...
T Consensus 93 l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~------l~~~~li~at~~~~~l~~~ 166 (328)
T PRK00080 93 LAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLD------LPPFTLIGATTRAGLLTSP 166 (328)
T ss_pred HHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeec------CCCceEEeecCCcccCCHH
Confidence 1122221110000 0 000000112222333333444444443332221111 1123445667775544322
Q ss_pred C--ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecccccCCCHHHHHHHHHHhccC
Q 000202 334 C--EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIV 411 (1866)
Q Consensus 334 ~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~~~~~w~~~l~~l~~~ 411 (1866)
. .....+++++++.++..+++.+.+.... ..-.++.+..|++.|+|.|-.+..+...+ ..|.... .-...
T Consensus 167 L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~-~~~~I 238 (328)
T PRK00080 167 LRDRFGIVQRLEFYTVEELEKIVKRSARILG--VEIDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVK-GDGVI 238 (328)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHc-CCCCC
Confidence 1 1135689999999999999998774322 22335678899999999994332222211 1121110 00001
Q ss_pred CC---chhhhhhhcccCCCChhhHHHHH
Q 000202 412 PH---MEIQEVLKISYDSLDDSQKRMHD 436 (1866)
Q Consensus 412 ~~---~~i~~~l~~Sy~~L~~~~k~~~~ 436 (1866)
.. ....+.+...+..|++.++..+.
T Consensus 239 ~~~~v~~~l~~~~~~~~~l~~~~~~~l~ 266 (328)
T PRK00080 239 TKEIADKALDMLGVDELGLDEMDRKYLR 266 (328)
T ss_pred CHHHHHHHHHHhCCCcCCCCHHHHHHHH
Confidence 11 12334567788899988887775
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.9e-06 Score=102.26 Aligned_cols=179 Identities=15% Similarity=0.121 Sum_probs=103.0
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHH---
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSK--- 285 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~--- 285 (1866)
..++.|+|.+|+|||||++.+++.....=-..+++... .....+++..++..++.... ..........+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~-----~~~~~~~l~~i~~~lG~~~~-~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNT-----RVDAEDLLRMVAADFGLETE-GRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCC-----CCCHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHHH
Confidence 45789999999999999999998765320112222211 12234566666666543322 1100001112222
Q ss_pred --HhhcCcEEEEEecCCC--HHHHHHHhhccC---CCCCCCEEEEEccccc--hhcc-----C--ccceeeecCCCCHHH
Q 000202 286 --RLARKKVLIVFDDVNH--PRQIELLIGRLD---RFASGSQVIITTRDKQ--VLTN-----C--EVDHIYQMKELVHAD 349 (1866)
Q Consensus 286 --~L~~k~~LlVlDdv~~--~~~~~~l~~~~~---~~~~gs~IiiTTR~~~--v~~~-----~--~~~~~~~l~~L~~~e 349 (1866)
...+++++||+||++. ...++.+..... .......|++|....- .+.. . .....+++++++.+|
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2367889999999985 344554432211 1122234556654321 0110 0 113467899999999
Q ss_pred HHHHHHhhcCCC--CCCChhHHHHHHHHHHHhCCCcceeeeecccc
Q 000202 350 AHKLFTQCAFRG--DHLDAGYTELAHKALKYAQGVPLALKVLGCYL 393 (1866)
Q Consensus 350 a~~Lf~~~a~~~--~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L 393 (1866)
..+++...+... .....-..+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999887654211 11112235788999999999999998888765
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.6e-07 Score=98.81 Aligned_cols=141 Identities=19% Similarity=0.234 Sum_probs=86.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccc----cceEEEEEecCCCCHH---HHHHHHHHHhccCCCCccCHHHHHHHHH
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVM----FHVIIWVTVSRYWNTR---KIQKQVLRQLSLHCKDRETDAQVAEKLW 1072 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 1072 (1866)
+++.|.|.+|+||||+++.++........ +...+|+......... .+...|..+..... ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 47899999999999999998654332222 4566677665543322 34444443332211 11111 122
Q ss_pred HH-hCCCcEEEEEeCCCCccc---------hhhhc-CCCCC-CCCCcEEEEccCChhh---hccCCCCcEEEecCCChHH
Q 000202 1073 QV-LNGEKFLLLLDDVWEQID---------LEAVG-IPVPG-SENGSKIFMASRELDV---CRNMDVNMVVKLETLSMKD 1137 (1866)
Q Consensus 1073 ~~-L~~kr~LlVlDdv~~~~~---------~~~l~-~~l~~-~~~gs~IivTTR~~~v---~~~~~~~~~~~l~~L~~~~ 1137 (1866)
.. .+.++++||||++++... +..+. ..++. ..++.+||||+|.... .........+.+.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 22 267899999999986322 11111 11221 2468999999998766 3333444689999999999
Q ss_pred HHHHHHHHh
Q 000202 1138 AWELFCKEV 1146 (1866)
Q Consensus 1138 a~~Lf~~~~ 1146 (1866)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999987654
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.8e-08 Score=120.29 Aligned_cols=85 Identities=20% Similarity=0.088 Sum_probs=48.5
Q ss_pred HhcCCCCcEEEccCCCCC-----CCChhhcCCCCCcEEecccccCc------ccCCccccCCCCCcEEEccCCCCC-cCC
Q 000202 1418 FELMTSLKVLNLSKTRIK-----SLPETLVNLKCLQILILRDCDFL------FVLPPEVGSLECLEVLDLRGTEIK-MLP 1485 (1866)
Q Consensus 1418 ~~~l~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~------~~lP~~i~~L~~L~~L~l~~~~i~-~lp 1485 (1866)
+..+..|++|++++|.++ .++..+...++|++|+++++... ..++..+.++++|+.|++++|.+. ..+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 345566777777777663 34555566666777777666533 123344556667777777776665 233
Q ss_pred hhhcCCCc---cceeccccc
Q 000202 1486 KEIGKLTS---LRYLTVFFF 1502 (1866)
Q Consensus 1486 ~~i~~L~~---L~~L~l~~~ 1502 (1866)
..+..+.+ |++|+++.+
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNN 118 (319)
T ss_pred HHHHHHhccCcccEEEeeCC
Confidence 34444443 666666543
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.5e-05 Score=97.25 Aligned_cols=288 Identities=16% Similarity=0.155 Sum_probs=156.9
Q ss_pred cchhhHHHHHHHHHhc----cCCccEEEEEcCCCchHHHHHHHHhcCcccc-ccc---ceEEEEEecCCCCHHHHHHHHH
Q 000202 980 VNYTQRNVRKIFRYVN----DVTASKIGVYGVGGIGKTAALKALISYPEVK-VMF---HVIIWVTVSRYWNTRKIQKQVL 1051 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~~~~~i~ 1051 (1866)
+.||++++++|...+. ....+.+.|+|++|+|||++++.+++.-... ... -..+|+++....+...++..|+
T Consensus 17 l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~ 96 (365)
T TIGR02928 17 IVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELA 96 (365)
T ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHH
Confidence 5688899998888874 2344578999999999999999997532111 111 1346777777777888999999
Q ss_pred HHhc---cCCC-CccCHHHHHHHHHHHhC--CCcEEEEEeCCCCcc-c----hhhhcCCC-CCCC--CCcEEEEccCChh
Q 000202 1052 RQLS---LHCK-DRETDAQVAEKLWQVLN--GEKFLLLLDDVWEQI-D----LEAVGIPV-PGSE--NGSKIFMASRELD 1117 (1866)
Q Consensus 1052 ~~l~---~~~~-~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~-~----~~~l~~~l-~~~~--~gs~IivTTR~~~ 1117 (1866)
.++. .... ...+..+....+.+.+. +++++||||+++... . +..+.... .... ..-.+|.+|+...
T Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~ 176 (365)
T TIGR02928 97 NQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLK 176 (365)
T ss_pred HHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcc
Confidence 9984 2211 11234455556666663 567899999998641 1 22222210 1111 2234455555443
Q ss_pred hhccCC-------CCcEEEecCCChHHHHHHHHHHhcC---C-CCCchHHHHHHHHHHHcCCChHHH-HHHHHHh--h--
Q 000202 1118 VCRNMD-------VNMVVKLETLSMKDAWELFCKEVGG---I-IQSPDIHLYARAIVKGCCGLPLLT-IVTAKAL--A-- 1181 (1866)
Q Consensus 1118 v~~~~~-------~~~~~~l~~L~~~~a~~Lf~~~~~~---~-~~~~~~~~~~~~I~~~c~GlPLAi-~~~g~~L--~-- 1181 (1866)
...... ....+.+++++.++..+++..++.. . .-.++..+....++..+.|.|-.+ .++-.+. +
T Consensus 177 ~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 177 FRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAER 256 (365)
T ss_pred hHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 211111 1246889999999999999887641 1 122333344556777778888443 3222211 1
Q ss_pred C---CCCHHHHHHHhhhCCCCccccccchhhHHHHHHHhHhccCCcchhHHHHhhcCC--CCCccccHHHHHHHHH--Hc
Q 000202 1182 G---ERNVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCSLF--PEDREVSIVEFIDYCI--QE 1254 (1866)
Q Consensus 1182 ~---~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~lk~cfly~s~F--p~~~~i~~~~Li~~W~--ae 1254 (1866)
. .-+.+..+.+.+.. -.....-+...||.+ .|..+..++.. -.+..+...++...+- ++
T Consensus 257 ~~~~~it~~~v~~a~~~~-------------~~~~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 257 EGAERVTEDHVEKAQEKI-------------EKDRLLELIRGLPTH-SKLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred cCCCCCCHHHHHHHHHHH-------------HHHHHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 1 11223333332221 012233456788876 34332222211 1334455555555321 12
Q ss_pred CccchhhHhHHHhHHHHHHHHHHhhhhhc
Q 000202 1255 GIIVGTLANAHKRGHQIVDVLVDASLLLI 1283 (1866)
Q Consensus 1255 G~i~~~~~~~~~~~~~~~~~L~~~sll~~ 1283 (1866)
.+ +...........++..|...+++..
T Consensus 323 ~~--~~~~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 323 DI--GVDPLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred hc--CCCCCcHHHHHHHHHHHHhcCCeEE
Confidence 11 0011233456677778888888764
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-06 Score=100.40 Aligned_cols=144 Identities=17% Similarity=0.231 Sum_probs=86.4
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
...+.|||.+|+|||+||.++++....+...+.|+..... ...... +.+.++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~-------~~~~~~---------------------~~~~~~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS-------QYFSPA---------------------VLENLE 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh-------hhhhHH---------------------HHhhcc
Confidence 3568999999999999999999987666556667652110 000000 111122
Q ss_pred cCcEEEEEecCCCH---HHHH-HHhhccCCC-CCCCEEEEEcccc----------chhccCccceeeecCCCCHHHHHHH
Q 000202 289 RKKVLIVFDDVNHP---RQIE-LLIGRLDRF-ASGSQVIITTRDK----------QVLTNCEVDHIYQMKELVHADAHKL 353 (1866)
Q Consensus 289 ~k~~LlVlDdv~~~---~~~~-~l~~~~~~~-~~gs~IiiTTR~~----------~v~~~~~~~~~~~l~~L~~~ea~~L 353 (1866)
+.-+|||||++.. .+|+ .+...+... ..|+.+||||.+. .+...+....++++++++.++.+++
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 2348999999852 3333 222222211 2356665554433 4444444456889999999999999
Q ss_pred HHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 354 FTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 354 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
+.+.++...- .-.++...-|++.+.|-.
T Consensus 170 L~~~a~~~~l--~l~~~v~~~L~~~~~~d~ 197 (229)
T PRK06893 170 LQRNAYQRGI--ELSDEVANFLLKRLDRDM 197 (229)
T ss_pred HHHHHHHcCC--CCCHHHHHHHHHhccCCH
Confidence 9988863321 122455666777666544
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-05 Score=97.70 Aligned_cols=270 Identities=12% Similarity=0.114 Sum_probs=143.5
Q ss_pred cccchhhHHHHHHHHHhc-----cCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHH
Q 000202 978 TAVNYTQRNVRKIFRYVN-----DVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLR 1052 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 1052 (1866)
.+|+|+++.++.+..++. ......+.++|++|+|||+||+.+.+... ..+ ..+..+....... +...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~---~~~~~~~~~~~~~-l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG--VNL---KITSGPALEKPGD-LAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCE---EEeccchhcCchh-HHHHHH
Confidence 357888888887777763 23345688999999999999999965322 121 1111111111112 222223
Q ss_pred HhccCCC------CccCHHHHHHHHHHHhCCCcEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhhccC--CC
Q 000202 1053 QLSLHCK------DRETDAQVAEKLWQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVCRNM--DV 1124 (1866)
Q Consensus 1053 ~l~~~~~------~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~--~~ 1124 (1866)
.+..... +.-. ....+.+...+.+.+..+|+|+..+...+.. .++ +.+-|..||+...+.... ..
T Consensus 78 ~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred hcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHhhc
Confidence 3322110 1011 1234456667777777788887665544432 122 245566677765443321 12
Q ss_pred CcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHhhhCCCCccccc
Q 000202 1125 NMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHASRKFSLPITIEE 1204 (1866)
Q Consensus 1125 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~ 1204 (1866)
...+.+++++.++..+++.+.+......- -.+....|++.|+|.|-.+..++..+ |..+...-... ...
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~~~-~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~--it~ 219 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNVEI-EPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI--INR 219 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC--cCH
Confidence 35789999999999999998775332211 23456779999999996655444432 22211000000 000
Q ss_pred cchhhHHHHHHHhHhccCCcchhHHHH-hhcCCCCCccccHHHHHHHHHHcCccchhhHhHHHhHHHHHH-HHHHhhhhh
Q 000202 1205 CCTEDLIELLKFSFDQLKDHDVKSCFL-HCSLFPEDREVSIVEFIDYCIQEGIIVGTLANAHKRGHQIVD-VLVDASLLL 1282 (1866)
Q Consensus 1205 ~~~~~i~~~l~~Sy~~L~~~~lk~cfl-y~s~Fp~~~~i~~~~Li~~W~aeG~i~~~~~~~~~~~~~~~~-~L~~~sll~ 1282 (1866)
.........+..+|..|+.+ -+..+. .++.++.+ .+....+.... | ......+..++ .|++++|+.
T Consensus 220 ~~v~~~l~~l~~~~~~l~~~-~~~~L~al~~~~~~~-~~~~~~ia~~l---g-------~~~~~~~~~~e~~Li~~~li~ 287 (305)
T TIGR00635 220 DIALKALEMLMIDELGLDEI-DRKLLSVLIEQFQGG-PVGLKTLAAAL---G-------EDADTIEDVYEPYLLQIGFLQ 287 (305)
T ss_pred HHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHhCCC-cccHHHHHHHh---C-------CCcchHHHhhhHHHHHcCCcc
Confidence 01122333355567778765 233333 33555433 34443332211 1 12334556667 699999996
Q ss_pred c
Q 000202 1283 I 1283 (1866)
Q Consensus 1283 ~ 1283 (1866)
.
T Consensus 288 ~ 288 (305)
T TIGR00635 288 R 288 (305)
T ss_pred c
Confidence 4
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.6e-06 Score=95.02 Aligned_cols=207 Identities=18% Similarity=0.184 Sum_probs=117.1
Q ss_pred HHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCC-CHHHHHHHHHHHhccCCCCccCHHHHH
Q 000202 990 IFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYW-NTRKIQKQVLRQLSLHCKDRETDAQVA 1068 (1866)
Q Consensus 990 i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~ 1068 (1866)
|.+.+....+...-.||++|+||||||+.+.. .....|. .++-.. +++++ +.+ .
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~gvkdl-r~i-----------------~ 93 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTSGVKDL-REI-----------------I 93 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----EeccccccHHHH-HHH-----------------H
Confidence 44555667777788999999999999999943 3333343 222221 22222 222 2
Q ss_pred HHH-HHHhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEE--ccCChhhh---ccCCCCcEEEecCCChHHHHH
Q 000202 1069 EKL-WQVLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFM--ASRELDVC---RNMDVNMVVKLETLSMKDAWE 1140 (1866)
Q Consensus 1069 ~~l-~~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~v~---~~~~~~~~~~l~~L~~~~a~~ 1140 (1866)
+.- .....|++.+|++|.|.. ..+-+.+. |...+|.-|+| ||-+.... .-..-..+|.+++|+.+|-.+
T Consensus 94 e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~ 170 (436)
T COG2256 94 EEARKNRLLGRRTILFLDEIHRFNKAQQDALL---PHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKK 170 (436)
T ss_pred HHHHHHHhcCCceEEEEehhhhcChhhhhhhh---hhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHH
Confidence 222 233458999999999975 45555554 44567887777 56555431 111224799999999999999
Q ss_pred HHHHHhcCCC-----CCchH-HHHHHHHHHHcCCChHHHHHHH---HHhhCCC---CHHHHHHHhhhCCCCccccccchh
Q 000202 1141 LFCKEVGGII-----QSPDI-HLYARAIVKGCCGLPLLTIVTA---KALAGER---NVSVWKHASRKFSLPITIEECCTE 1208 (1866)
Q Consensus 1141 Lf~~~~~~~~-----~~~~~-~~~~~~I~~~c~GlPLAi~~~g---~~L~~~~---~~~~w~~~~~~~~~~~~~~~~~~~ 1208 (1866)
++.+.+.... ....+ ++.-..++..++|.--++-... ..+.... ..+..+.++..-........+..-
T Consensus 171 ~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hY 250 (436)
T COG2256 171 LLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHY 250 (436)
T ss_pred HHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHH
Confidence 9988542211 11112 3355668888888754433222 2222211 234444444322111111223345
Q ss_pred hHHHHHHHhHhccCCc
Q 000202 1209 DLIELLKFSFDQLKDH 1224 (1866)
Q Consensus 1209 ~i~~~l~~Sy~~L~~~ 1224 (1866)
++.++|.-|-..=.++
T Consensus 251 dliSA~hKSvRGSD~d 266 (436)
T COG2256 251 DLISALHKSVRGSDPD 266 (436)
T ss_pred HHHHHHHHhhccCCcC
Confidence 6777887777776544
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.3e-08 Score=105.68 Aligned_cols=126 Identities=23% Similarity=0.315 Sum_probs=103.5
Q ss_pred ccccccCcEEEccCCCCCCCCCCC-CCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcE
Q 000202 1371 EEEWTHAKMIFFMDNDLQTLPGRP-SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQI 1449 (1866)
Q Consensus 1371 ~~~~~~l~~l~l~~~~l~~l~~~~-~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~ 1449 (1866)
...|+.|+.+++++|.+..+.... -.+.++.|++++| .+..+.. ...+++|..||||+|.++++-..=.+|-|.++
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 456899999999999998877543 4689999999998 4555544 47789999999999998887766678889999
Q ss_pred EecccccCcccCCccccCCCCCcEEEccCCCCCcCC--hhhcCCCccceecccc
Q 000202 1450 LILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLP--KEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1450 L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~ 1501 (1866)
|.|++|.+ ..+ +.+++|.+|..||+++|+|..+. .+||+|+.|++|.+.+
T Consensus 357 L~La~N~i-E~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 357 LKLAQNKI-ETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred eehhhhhH-hhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 99999974 343 57889999999999999999774 4699999999998743
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.6e-05 Score=98.69 Aligned_cols=279 Identities=13% Similarity=0.130 Sum_probs=175.0
Q ss_pred HHHHHhcc-CCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC-CCHHHHHHHHHHHhccCCCC------
Q 000202 989 KIFRYVND-VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY-WNTRKIQKQVLRQLSLHCKD------ 1060 (1866)
Q Consensus 989 ~i~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~------ 1060 (1866)
++++.|.+ .+.+.+.|..++|.|||||+.+... . ...=..+.|.+.... .+...+.+.++..++.-...
T Consensus 26 rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~--~-~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~ 102 (894)
T COG2909 26 RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRE--L-AADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQ 102 (894)
T ss_pred HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHH--h-cCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHH
Confidence 45566644 3678999999999999999999843 1 122346789998765 56777888888888642221
Q ss_pred -------ccCHHHHHHHHHHHhC--CCcEEEEEeCCCCc------cchhhhcCCCCCCCCCcEEEEccCChhhhccCC--
Q 000202 1061 -------RETDAQVAEKLWQVLN--GEKFLLLLDDVWEQ------IDLEAVGIPVPGSENGSKIFMASRELDVCRNMD-- 1123 (1866)
Q Consensus 1061 -------~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~------~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~-- 1123 (1866)
..+...+...+...|. .+++++||||-.-. ....-+.. ....+-..|||||+..-+....
T Consensus 103 ~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~---~~P~~l~lvv~SR~rP~l~la~lR 179 (894)
T COG2909 103 TLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLK---HAPENLTLVVTSRSRPQLGLARLR 179 (894)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHH---hCCCCeEEEEEeccCCCCccccee
Confidence 1223334455555454 35899999997532 12233333 3345778999999865433211
Q ss_pred -CCcEEEec----CCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHhhhCCC
Q 000202 1124 -VNMVVKLE----TLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHASRKFSL 1198 (1866)
Q Consensus 1124 -~~~~~~l~----~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~~~~~~ 1198 (1866)
.+...++. .++.+|+-++|....+..-+. .-++.+.+...|-+-|+..++=.++...+.+.-...+..
T Consensus 180 lr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~----~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG--- 252 (894)
T COG2909 180 LRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDA----ADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSG--- 252 (894)
T ss_pred ehhhHHhcChHhhcCChHHHHHHHHHcCCCCCCh----HHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccc---
Confidence 12233333 478899999888765433222 235667888888888888887777743333222211110
Q ss_pred CccccccchhhHHHHH-HHhHhccCCcchhHHHHhhcCCCCCccccHHHHHHHHHHcCccchhhHhHHHhHHHHHHHHHH
Q 000202 1199 PITIEECCTEDLIELL-KFSFDQLKDHDVKSCFLHCSLFPEDREVSIVEFIDYCIQEGIIVGTLANAHKRGHQIVDVLVD 1277 (1866)
Q Consensus 1199 ~~~~~~~~~~~i~~~l-~~Sy~~L~~~~lk~cfly~s~Fp~~~~i~~~~Li~~W~aeG~i~~~~~~~~~~~~~~~~~L~~ 1277 (1866)
..+.|...| .=-++.||++ +|.-++-||+++.- -.+|+..-. -++.|..++++|.+
T Consensus 253 -------~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f----~~eL~~~Lt-----------g~~ng~amLe~L~~ 309 (894)
T COG2909 253 -------AASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRF----NDELCNALT-----------GEENGQAMLEELER 309 (894)
T ss_pred -------hHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHh----hHHHHHHHh-----------cCCcHHHHHHHHHh
Confidence 011222222 2246789987 89998899998642 123332221 23567889999999
Q ss_pred hhhhh--cccccCcccchhHHHHHHHHH
Q 000202 1278 ASLLL--INEVHNSIRMPGLMKDLAFGI 1303 (1866)
Q Consensus 1278 ~sll~--~~~~~~~~~mhdlv~dla~~i 1303 (1866)
++++. .++....|+.|.++.||-+.-
T Consensus 310 ~gLFl~~Ldd~~~WfryH~LFaeFL~~r 337 (894)
T COG2909 310 RGLFLQRLDDEGQWFRYHHLFAEFLRQR 337 (894)
T ss_pred CCCceeeecCCCceeehhHHHHHHHHhh
Confidence 99997 356678899999999997643
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.7e-08 Score=114.33 Aligned_cols=131 Identities=29% Similarity=0.348 Sum_probs=115.1
Q ss_pred CCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCC
Q 000202 1367 EPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKC 1446 (1866)
Q Consensus 1367 ~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~ 1446 (1866)
.+.....+..+..++++.|.++.+|.-...--|++|.+++| .++.+|+.+ +.+..|..||.+.|.+..+|..++.|..
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNN-kl~~lp~~i-g~~~tl~~ld~s~nei~slpsql~~l~s 190 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNN-KLTSLPEEI-GLLPTLAHLDVSKNEIQSLPSQLGYLTS 190 (722)
T ss_pred cchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecC-ccccCCccc-ccchhHHHhhhhhhhhhhchHHhhhHHH
Confidence 34556778888999999999999996555556999999966 899999998 6899999999999999999999999999
Q ss_pred CcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceecccc
Q 000202 1447 LQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1447 L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~ 1501 (1866)
|+.|.++.|+ +..+|..++. -.|..||+++|+|..+|-.|.+|+.||+|.|.+
T Consensus 191 lr~l~vrRn~-l~~lp~El~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 191 LRDLNVRRNH-LEDLPEELCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred HHHHHHhhhh-hhhCCHHHhC-CceeeeecccCceeecchhhhhhhhheeeeecc
Confidence 9999999998 5678888884 478999999999999999999999999998854
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.8e-06 Score=105.20 Aligned_cols=173 Identities=18% Similarity=0.333 Sum_probs=103.4
Q ss_pred ccCCCceeehhhHHH---HHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHH
Q 000202 183 SESKDLIGVEWRIKE---IESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~---l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
...+++||.+..+.. +..++..+ ....+.++|.+|+||||||+.+++.....|.. +. .. ...... .
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~--a~---~~~~~~-i 77 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LS--AV---TSGVKD-L 77 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Ee--cc---cccHHH-H
Confidence 345679999988766 78777643 34568889999999999999999876554421 11 11 001111 1
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEE--Eccccchh--cc
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVII--TTRDKQVL--TN 333 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~--~~ 333 (1866)
++++.... .....+++.+|+||+++. ..+.+.++..+. .|..++| ||.+.... ..
T Consensus 78 r~ii~~~~----------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 78 REVIEEAR----------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHHHHHH----------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHH
Confidence 11111110 011245788999999984 456666666543 3555555 34443211 11
Q ss_pred -CccceeeecCCCCHHHHHHHHHhhcCCCCCCC-hhHHHHHHHHHHHhCCCcce
Q 000202 334 -CEVDHIYQMKELVHADAHKLFTQCAFRGDHLD-AGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 334 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLA 385 (1866)
.....++++++++.++..+++.+.+....... .-..+....+++.++|.|..
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~ 192 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARR 192 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHH
Confidence 12236789999999999999987542211100 22345677788888887754
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.1e-06 Score=94.34 Aligned_cols=112 Identities=26% Similarity=0.311 Sum_probs=56.2
Q ss_pred CCCCCCCcc-ccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC--hh
Q 000202 1364 GLTEPPSEE-EWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP--ET 1440 (1866)
Q Consensus 1364 ~~~~~~~~~-~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp--~~ 1440 (1866)
.++...... .+.+++.|++++|.+..++.+..+++|++|++++| .+..+++.+...+++|+.|+|++|+|..+- ..
T Consensus 30 ~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~ 108 (175)
T PF14580_consen 30 QISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSNNKISDLNELEP 108 (175)
T ss_dssp ------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGG
T ss_pred ccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcCCcCCChHHhHH
Confidence 333333343 46789999999999999999999999999999988 677887666567899999999999998654 57
Q ss_pred hcCCCCCcEEecccccCcccCCc----cccCCCCCcEEEcc
Q 000202 1441 LVNLKCLQILILRDCDFLFVLPP----EVGSLECLEVLDLR 1477 (1866)
Q Consensus 1441 i~~L~~L~~L~L~~~~~~~~lP~----~i~~L~~L~~L~l~ 1477 (1866)
+..+++|+.|+|.+|++... +. -+..+++|+.||-.
T Consensus 109 L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp GGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred HHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 78899999999999986533 43 46778999999854
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.27 E-value=1e-06 Score=107.67 Aligned_cols=80 Identities=26% Similarity=0.279 Sum_probs=36.6
Q ss_pred CCCcEEEccCCCCC-----CCChhhcCCCCCcEEecccccCcc----cCCccccCCCCCcEEEccCCCCC-----cCChh
Q 000202 1422 TSLKVLNLSKTRIK-----SLPETLVNLKCLQILILRDCDFLF----VLPPEVGSLECLEVLDLRGTEIK-----MLPKE 1487 (1866)
Q Consensus 1422 ~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~----~lP~~i~~L~~L~~L~l~~~~i~-----~lp~~ 1487 (1866)
++|+.|+|++|.++ .++..+..+.+|++|++++|.+.+ .++..+..+++|++|++++|.+. .++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 45555555555544 223334444555555555554331 12223333445555555555443 12233
Q ss_pred hcCCCccceecccc
Q 000202 1488 IGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1488 i~~L~~L~~L~l~~ 1501 (1866)
+.++++|++|++++
T Consensus 217 ~~~~~~L~~L~ls~ 230 (319)
T cd00116 217 LASLKSLEVLNLGD 230 (319)
T ss_pred hcccCCCCEEecCC
Confidence 44445555555543
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=7e-06 Score=99.84 Aligned_cols=272 Identities=11% Similarity=0.091 Sum_probs=142.2
Q ss_pred cccccchhhHHHHHHHHHhc-----cCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHH
Q 000202 976 NVTAVNYTQRNVRKIFRYVN-----DVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQV 1050 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 1050 (1866)
.+..++|+++.++.+...+. ......+.++|++|+||||||+.+.+.... .+ .++..+ .......+..+
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~--~~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV--NI---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC--Ce---EEEecc-cccChHHHHHH
Confidence 44567888887777665552 233557889999999999999999654322 11 111111 11111222333
Q ss_pred HHHhccCCC------CccCHHHHHHHHHHHhCCCcEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhhccC--
Q 000202 1051 LRQLSLHCK------DRETDAQVAEKLWQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVCRNM-- 1122 (1866)
Q Consensus 1051 ~~~l~~~~~------~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~-- 1122 (1866)
+..+..... +... ....+.+...+.+.+..+|+|+..+...+.. .++ +.+-|..||+...+....
T Consensus 97 l~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HHhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccceee---cCC---CceEEeecCCcccCCHHHHH
Confidence 333322110 0000 1223345556666667777776554332211 111 234566677755443221
Q ss_pred CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHhhhCCCCccc
Q 000202 1123 DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHASRKFSLPITI 1202 (1866)
Q Consensus 1123 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~~~~~~~~~~ 1202 (1866)
.....+++++++.++..+++.+.+...... --.+.+..|++.|+|.|-.+..+...+. .|...... .. .
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~--~~--I 238 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVE-IDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGD--GV--I 238 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCC--CC--C
Confidence 123578999999999999999887643211 1234578899999999954444443321 22211100 00 1
Q ss_pred cccchhhHHHHHHHhHhccCCcchhHHHH-hhcCCCCCccccHHHHHHHHHHcCccchhhHhHHHhHHHHHH-HHHHhhh
Q 000202 1203 EECCTEDLIELLKFSFDQLKDHDVKSCFL-HCSLFPEDREVSIVEFIDYCIQEGIIVGTLANAHKRGHQIVD-VLVDASL 1280 (1866)
Q Consensus 1203 ~~~~~~~i~~~l~~Sy~~L~~~~lk~cfl-y~s~Fp~~~~i~~~~Li~~W~aeG~i~~~~~~~~~~~~~~~~-~L~~~sl 1280 (1866)
...........+...|..|++. -+.-+. ....|+.+ .+..+.+.... | ......+..++ .|++.+|
T Consensus 239 ~~~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~-~~~~~~~a~~l---g-------~~~~~~~~~~e~~Li~~~l 306 (328)
T PRK00080 239 TKEIADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGG-PVGLDTLAAAL---G-------EERDTIEDVYEPYLIQQGF 306 (328)
T ss_pred CHHHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCC-ceeHHHHHHHH---C-------CCcchHHHHhhHHHHHcCC
Confidence 1111223344456667778765 344442 55566655 45544442211 1 12233444445 7999999
Q ss_pred hhc
Q 000202 1281 LLI 1283 (1866)
Q Consensus 1281 l~~ 1283 (1866)
++.
T Consensus 307 i~~ 309 (328)
T PRK00080 307 IQR 309 (328)
T ss_pred ccc
Confidence 864
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.6e-06 Score=94.20 Aligned_cols=152 Identities=14% Similarity=0.087 Sum_probs=90.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+.+.+||..|+|||+|++++++.... ....+.|+++... ..... .+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~--~~~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLL--NQRTAIYIPLSKS---QYFSP---------------------AVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH--cCCCeEEeeHHHh---hhhhH---------------------HHHhhcc-c
Confidence 456889999999999999999764222 2234456665321 00000 1111222 2
Q ss_pred cEEEEEeCCCC---ccchhh-hcCCCCC-CCCCcEEEE-ccCC---------hhhhccCCCCcEEEecCCChHHHHHHHH
Q 000202 1079 KFLLLLDDVWE---QIDLEA-VGIPVPG-SENGSKIFM-ASRE---------LDVCRNMDVNMVVKLETLSMKDAWELFC 1143 (1866)
Q Consensus 1079 r~LlVlDdv~~---~~~~~~-l~~~l~~-~~~gs~Iiv-TTR~---------~~v~~~~~~~~~~~l~~L~~~~a~~Lf~ 1143 (1866)
.-+|||||++. ..+|+. +...+.. ...|+.+|| |++. ..+...+....+++++++++++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 34899999996 344552 2221211 123556655 4443 3556666666799999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHH
Q 000202 1144 KEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAK 1178 (1866)
Q Consensus 1144 ~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~ 1178 (1866)
+.+....- .--++...-|++.+.|..-++..+-.
T Consensus 172 ~~a~~~~l-~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 172 RNAYQRGI-ELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 88753321 11234556688888877655544433
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.5e-06 Score=95.29 Aligned_cols=92 Identities=28% Similarity=0.439 Sum_probs=76.5
Q ss_pred CCCCccEEEccccccccCchHHHHHHHHhhCCCceEeeC-CCCCCCCCchhHHHHhhhcceEEEEeccCccc--------
Q 000202 12 DKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDN-DLKRGDEIPESLLGTIEASTISIIIFSEKYAS-------- 82 (1866)
Q Consensus 12 ~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~-------- 82 (1866)
.+...|||||||..- -+..++-+...|.-+|++||+|- .+..|. +...+.+.|..++-+|.|+|||..+
T Consensus 609 ~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC 686 (832)
T KOG3678|consen 609 LSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC 686 (832)
T ss_pred ccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence 457899999997764 35678878778899999999997 777776 5578999999999999999999864
Q ss_pred chhhHHHHHHHHHHHhhCCCEEEEEEE
Q 000202 83 SKWCLDELLKILECKRNYGQIVIPVFY 109 (1866)
Q Consensus 83 s~~c~~El~~~~~~~~~~~~~v~pvf~ 109 (1866)
-.|.-.|++.+++|.+ -+||||-
T Consensus 687 eDWVHKEl~~Afe~~K----NIiPI~D 709 (832)
T KOG3678|consen 687 EDWVHKELKCAFEHQK----NIIPIFD 709 (832)
T ss_pred HHHHHHHHHHHHHhcC----Ceeeeec
Confidence 3588889999998864 4999994
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.9e-05 Score=93.23 Aligned_cols=200 Identities=13% Similarity=0.078 Sum_probs=114.7
Q ss_pred ccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc--cceEEEEeeccccccccHHHH
Q 000202 181 FQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF--EGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 181 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l 258 (1866)
.|....+++|-+...+.+.+.+..+. -...+.++|+.|+||+|+|.++++.+-.+= .....-........... ...
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~-c~~ 91 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPD-HPV 91 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCC-ChH
Confidence 34566789999999999999888653 355688999999999999999998653211 10000000000000000 000
Q ss_pred HHHHHHHHhc----------cccccCccchhHHHHHH---Hh-----hcCcEEEEEecCC--CHHHHHHHhhccCCCCCC
Q 000202 259 RKELLSKLLN----------DRNVKNFQNISVNFQSK---RL-----ARKKVLIVFDDVN--HPRQIELLIGRLDRFASG 318 (1866)
Q Consensus 259 ~~~ll~~~~~----------~~~~~~~~~~~~~~l~~---~L-----~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~g 318 (1866)
.+.+...... +...........+.+++ .+ .+.+-++|+|+++ +......++..+....++
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111000000 00000001111223333 22 2466789999997 466677777776665567
Q ss_pred CEEEEEccccchh-ccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeee
Q 000202 319 SQVIITTRDKQVL-TNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKV 388 (1866)
Q Consensus 319 s~IiiTTR~~~v~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~ 388 (1866)
+.+|++|.+.+-. ... .....+.+.+++.++..+++...... .. .+....+++.++|.|+....
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~ 237 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALR 237 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHH
Confidence 7788888766432 221 23568999999999999999875411 11 12236789999999985443
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.3e-07 Score=104.54 Aligned_cols=189 Identities=20% Similarity=0.250 Sum_probs=117.1
Q ss_pred ccccccCcEEEccCCCCCCCCC----CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCC--CCChhhcCC
Q 000202 1371 EEEWTHAKMIFFMDNDLQTLPG----RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIK--SLPETLVNL 1444 (1866)
Q Consensus 1371 ~~~~~~l~~l~l~~~~l~~l~~----~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~--~lp~~i~~L 1444 (1866)
...+++++.|+++.|-+..... ...+++|+.|+|+.|..........-..+++|+.|.|+.|.++ .+-..+-.+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 4457788888888887664322 2467888888888885444444434446788888888888887 344455667
Q ss_pred CCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCC--hhhcCCCccceeccccccccCCCccccCCCCCCChhh
Q 000202 1445 KCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLP--KEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDI 1522 (1866)
Q Consensus 1445 ~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~ 1522 (1866)
++|..|+|.+|.....--.+...++.|+.|||++|++...| ..++.|+.|+.|+++.++-. .+..+. .-+...
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~----si~~~d-~~s~~k 296 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA----SIAEPD-VESLDK 296 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcc----hhcCCC-ccchhh
Confidence 88888888888544433344556778899999998888776 45788888888888665421 111111 001122
Q ss_pred hhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCc
Q 000202 1523 LSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEI 1570 (1866)
Q Consensus 1523 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 1570 (1866)
...+++|+.|++..++.. .|. ....+..+++|+.|.+..|.+
T Consensus 297 t~~f~kL~~L~i~~N~I~-~w~-----sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 297 THTFPKLEYLNISENNIR-DWR-----SLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hcccccceeeecccCccc-ccc-----ccchhhccchhhhhhcccccc
Confidence 345667777777644321 121 233445555666666555443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.2e-07 Score=109.21 Aligned_cols=147 Identities=20% Similarity=0.194 Sum_probs=89.2
Q ss_pred ccCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhh
Q 000202 1661 MSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQ 1740 (1866)
Q Consensus 1661 l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~ 1740 (1866)
+..|+.|..++|..+....-.. .....++|+.|.++.|..++......+. -..+.|+.+.+..|.........+...
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~a--Lg~~~~~L~~l~l~~c~~fsd~~ft~l~-rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWA--LGQHCHNLQVLELSGCQQFSDRGFTMLG-RNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHH--HhcCCCceEEEeccccchhhhhhhhhhh-cCChhhhhhcccccceehhhhHhhhcc
Confidence 4566667777776654432211 2334577777777777666543222211 146778888888886544431223446
Q ss_pred hccccceeeeccccccceecccCccc-cccccCCCCcCEEeccCCccccccc---cCCCCCccEEEEEcCccccccC
Q 000202 1741 FLAKLEELTVEYCLAVKSIILDGEIT-YSSCIMLPSLKKLRLHHLPELANIW---RNDWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1741 ~L~sLe~L~I~~C~~L~~l~~~~~~~-~~~~~~lp~L~~L~L~~c~~L~~i~---~~~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
+++.|+.|.+++|..++.- |... .........|..|.|.+||....-- ...+++||.+.+.+|..+.+-|
T Consensus 370 ~C~~lr~lslshce~itD~---gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDE---GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred CCchhccCChhhhhhhhhh---hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence 7888899999888766443 1000 1122356778889999998764331 1257889999999988887544
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.6e-05 Score=102.90 Aligned_cols=183 Identities=15% Similarity=0.146 Sum_probs=113.1
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc-c-c-ceEEEEeec------------
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH-F-E-GSYFACNVR------------ 247 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~-f-~-~~~~~~~~~------------ 247 (1866)
....++||-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+... . . ..|..+...
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 345689999999999999887542 24556899999999999999999976432 1 0 011111000
Q ss_pred ccccc-ccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEE
Q 000202 248 AAEET-GRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIIT 324 (1866)
Q Consensus 248 ~~~~~-~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiT 324 (1866)
+.+.. ..-.+..+++...+ ...-..+++-++|||+++ +.+..+.|+..+.......++|++
T Consensus 92 EidAas~~kVDdIReLie~v----------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 92 EVDAASRTKVDDTRELLDNV----------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred EeccccccCHHHHHHHHHHH----------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 00000 00001111111111 011124677899999997 467788888887766677777776
Q ss_pred ccccc-hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 325 TRDKQ-VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 325 TR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
|.+.+ +.... .....|++++|+.++..+.+.+.+-... .....+.+..|++.++|.|-
T Consensus 156 TTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R 215 (944)
T PRK14949 156 TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMR 215 (944)
T ss_pred CCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 66543 33221 2247899999999999988877552211 12234567889999999774
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.1e-05 Score=99.89 Aligned_cols=185 Identities=14% Similarity=0.127 Sum_probs=109.5
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc--ccceEEEEeeccccccccHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH--FEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
....++||.+..++.|..++..+. -.+.+.++|..|+||||+|+.+++.+... +.. ..+ ..-....
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~-------~PC----G~C~sCr 80 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-------QPC----GVCRACR 80 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC-------CCC----cccHHHH
Confidence 345679999999999999998543 34566799999999999999999865321 100 000 0000000
Q ss_pred HHHHHHhccccccC---ccchhHHHHHHH--------hhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccc
Q 000202 261 ELLSKLLNDRNVKN---FQNISVNFQSKR--------LARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRD 327 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~---~~~~~~~~l~~~--------L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~ 327 (1866)
.+... ...+..+ ..+...+.+++. ..++.-++|||+++. ...++.++..+.......++|+||++
T Consensus 81 ~I~~G--~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd 158 (830)
T PRK07003 81 EIDEG--RFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTD 158 (830)
T ss_pred HHhcC--CCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 00000 0000000 000001111111 123455888999984 45577787777666668888888877
Q ss_pred cchhc-cC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 328 KQVLT-NC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 328 ~~v~~-~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.+-.. .. .....++++.++.++..+.+.+.+.... ..-..+....|++.++|..
T Consensus 159 ~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg--I~id~eAL~lIA~~A~Gsm 214 (830)
T PRK07003 159 PQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER--IAFEPQALRLLARAAQGSM 214 (830)
T ss_pred hhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCH
Confidence 64332 11 2346899999999999998887663222 1223456777888888854
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=2e-06 Score=108.28 Aligned_cols=174 Identities=27% Similarity=0.344 Sum_probs=100.2
Q ss_pred cccCcEEEccCCCCCCCCCCCCCC--cccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEe
Q 000202 1374 WTHAKMIFFMDNDLQTLPGRPSCP--NLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILI 1451 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~~l~~~~~~~--~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~ 1451 (1866)
++.+..+.+.+|.+..++...... +|+.|++++| .+..+|..+ +.++.|+.|++++|.+..+|...+.+.+|+.|+
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 345666666666666666544443 6666666665 455554333 556666666666666666666666666666666
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcE
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALET 1531 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~ 1531 (1866)
+++|. +..+|..++.+..|++|.+++|.+..+|..+.++.++..|.+... ....+ ...+..+.+|+.
T Consensus 193 ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n------~~~~~------~~~~~~l~~l~~ 259 (394)
T COG4886 193 LSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN------KLEDL------PESIGNLSNLET 259 (394)
T ss_pred ccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc------eeeec------cchhccccccce
Confidence 66666 455666555555666666666655555556666666666653221 11110 123455666777
Q ss_pred eecccCCCCCccccccccccccccCCCCCCEEEeecCCcc
Q 000202 1532 LSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIE 1571 (1866)
Q Consensus 1532 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 1571 (1866)
|+++.+... .+.. +..+.+|+.|+++.+.+.
T Consensus 260 L~~s~n~i~--------~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 260 LDLSNNQIS--------SISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ecccccccc--------cccc-ccccCccCEEeccCcccc
Confidence 766633221 1222 566667777777666543
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.8e-05 Score=95.58 Aligned_cols=178 Identities=15% Similarity=0.132 Sum_probs=108.1
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcccc---------------------ceE
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFE---------------------GSY 241 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~---------------------~~~ 241 (1866)
....+++|-+..++.+...+..+. -.+.+.++|..|+||||+|+.+++.+..... ...
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLI 91 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceE
Confidence 345679999999999999887542 3567889999999999999999986542110 000
Q ss_pred EEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCC
Q 000202 242 FACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGS 319 (1866)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs 319 (1866)
++... .... .+-.+++...+... -..+++-++|+|+++. ...++.++..+....+..
T Consensus 92 ~~~~~----~~~~-v~~ir~i~~~~~~~----------------p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~ 150 (363)
T PRK14961 92 EIDAA----SRTK-VEEMREILDNIYYS----------------PSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHI 150 (363)
T ss_pred Eeccc----ccCC-HHHHHHHHHHHhcC----------------cccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCe
Confidence 11000 0000 00011111111000 0123456899999985 345677777776656677
Q ss_pred EEEEEccccc-hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 320 QVIITTRDKQ-VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 320 ~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
++|++|.+.+ +.... .....+++++++.++..+.+...+-.... .-.++.+..|++.++|.|-
T Consensus 151 ~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al~~ia~~s~G~~R 215 (363)
T PRK14961 151 KFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI--DTDEYALKLIAYHAHGSMR 215 (363)
T ss_pred EEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 7777775543 32221 22468999999999998888765532221 1224556778888888764
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.6e-06 Score=109.73 Aligned_cols=101 Identities=24% Similarity=0.371 Sum_probs=79.8
Q ss_pred cccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCC-CCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEc
Q 000202 1398 NLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIK-SLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDL 1476 (1866)
Q Consensus 1398 ~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l 1476 (1866)
.+..|+|++|.....+|..+ +.+++|++|+|++|.+. .+|..++.+.+|++|+|++|.+.+.+|..+++|++|++|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 36677787775555667665 77889999999999887 78888999999999999999888888988999999999999
Q ss_pred cCCCCC-cCChhhcCC-Cccceecc
Q 000202 1477 RGTEIK-MLPKEIGKL-TSLRYLTV 1499 (1866)
Q Consensus 1477 ~~~~i~-~lp~~i~~L-~~L~~L~l 1499 (1866)
++|.++ .+|..++.+ .++..+++
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred cCCcccccCChHHhhccccCceEEe
Confidence 998887 778877653 34444444
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.4e-05 Score=96.35 Aligned_cols=193 Identities=12% Similarity=0.085 Sum_probs=105.2
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc-cc-eEEEEeeccccccccHHHHHH-
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF-EG-SYFACNVRAAEETGRLDDLRK- 260 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~l~~- 260 (1866)
...+++|++..++.+..++..+ ....+.++|.+|+||||+|+++++.+.... .. .+++....-..... ..+..
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~--~~~~~~ 88 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGK--KYLVED 88 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcch--hhhhcC
Confidence 3467999999999999988754 334578999999999999999998764332 22 22332111000000 00000
Q ss_pred -HHHHHHhccccccCccchhHHHHHH----Hh-----hcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcccc
Q 000202 261 -ELLSKLLNDRNVKNFQNISVNFQSK----RL-----ARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDK 328 (1866)
Q Consensus 261 -~ll~~~~~~~~~~~~~~~~~~~l~~----~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~ 328 (1866)
.... ...... .........+++ .. ...+-+||+||++. ......+...+......+++|+||.+.
T Consensus 89 ~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 89 PRFAH-FLGTDK--RIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred cchhh-hhhhhh--hhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 0000 000000 000001111221 11 13345899999974 333444554444445567888887543
Q ss_pred c-hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce
Q 000202 329 Q-VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 329 ~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
. +.... .....+++.+++.++..+.+...+-.... .-..+....+++.++|.+-.
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~al~~l~~~~~gdlr~ 222 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV--DYDDDGLELIAYYAGGDLRK 222 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 2 22211 22357889999999998888876532221 12245677788888876543
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.6e-05 Score=85.16 Aligned_cols=171 Identities=18% Similarity=0.252 Sum_probs=95.7
Q ss_pred cccCCCceeehhhHHHHHHhhhc---CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRT---GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~---~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
|...++|||.+..++.+.-++.. ......-+.+||++|+||||||.-+++.....|. +.. ... -....++
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g~~---i~k~~dl 92 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-GPA---IEKAGDL 92 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-CCC-----SCHHH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-chh---hhhHHHH
Confidence 44567899999999988766652 2334667899999999999999999998877763 111 111 0011111
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCC--------CCCCCE--------
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDR--------FASGSQ-------- 320 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~--------~~~gs~-------- 320 (1866)
.. +...++ ++-+|.+|.+.. ..+-+.|.+...+ .+++.|
T Consensus 93 ~~----------------------il~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 93 AA----------------------ILTNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp HH----------------------HHHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred HH----------------------HHHhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 11 111122 345778899974 4555555554332 122222
Q ss_pred ---EEEEccccchhccCcc--ceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 321 ---VIITTRDKQVLTNCEV--DHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 321 ---IiiTTR~~~v~~~~~~--~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
|=.|||...+..-... ..+.+++..+.+|-.+...+.+..-. .+-.++.+.+|++.+.|-|-
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPR 216 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPR 216 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChH
Confidence 3358887655433322 34568999999999999987763222 23346778999999999884
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.1e-07 Score=98.18 Aligned_cols=133 Identities=20% Similarity=0.186 Sum_probs=88.4
Q ss_pred CCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceecccc
Q 000202 1422 TSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1422 ~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~ 1501 (1866)
..|..||||+|.|+.+-+++.-++.++.|++++|.+... .++..|++|++|||++|.++++-..-.+|-|.++|.+..
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 457888888888888888888888888888888875432 347777888888888887776655555666677776642
Q ss_pred ccccCCCccccCCCCCCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHH
Q 000202 1502 FGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAE 1575 (1866)
Q Consensus 1502 ~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 1575 (1866)
. .+- ...++++|-+|..|++..+.... -.....+++++.|+.|.+..|.+..+.+
T Consensus 362 N------~iE-------~LSGL~KLYSLvnLDl~~N~Ie~------ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 362 N------KIE-------TLSGLRKLYSLVNLDLSSNQIEE------LDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred h------hHh-------hhhhhHhhhhheeccccccchhh------HHHhcccccccHHHHHhhcCCCccccch
Confidence 1 011 11235666677777776433211 0123567888888988888888766543
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.1e-05 Score=90.69 Aligned_cols=171 Identities=18% Similarity=0.162 Sum_probs=97.1
Q ss_pred CCCcee--ehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 185 SKDLIG--VEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 185 ~~~~vG--r~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
.++|++ .+..++.+.+++.. .....|.|+|.+|+|||+||+.++++........+|+.. .. +....
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~-~~---------~~~~~ 81 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPL-AE---------LAQAD 81 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeH-HH---------HHHhH
Confidence 345662 44567777777643 245678999999999999999999876544334444431 11 00000
Q ss_pred HHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCHH----HHHHHhhccCC-CCCCCEEEEEccccch-------
Q 000202 263 LSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPR----QIELLIGRLDR-FASGSQVIITTRDKQV------- 330 (1866)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IiiTTR~~~v------- 330 (1866)
. . +...+.+ .-+|||||++... ..+.+...+.. ...+.++|+||+....
T Consensus 82 -~----------------~-~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 82 -P----------------E-VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred -H----------------H-HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccH
Confidence 0 0 0011222 2389999997432 12333322211 1234589999885421
Q ss_pred --hccCccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeee
Q 000202 331 --LTNCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKV 388 (1866)
Q Consensus 331 --~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~ 388 (1866)
.........+++++++.++...++...+-.... .-..+....+++.++|+|..+.-
T Consensus 143 ~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~ 200 (226)
T TIGR03420 143 DLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMA 200 (226)
T ss_pred HHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHH
Confidence 111122357899999999988888765421111 11235567777778887765443
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.6e-06 Score=54.82 Aligned_cols=20 Identities=40% Similarity=0.670 Sum_probs=19.0
Q ss_pred CeeEEEcCCCCCcccCCCcc
Q 000202 534 NLVSLKMWDGKVKERWDDVQ 553 (1866)
Q Consensus 534 ~l~~l~l~~s~~~~lw~~~~ 553 (1866)
+||+|+||+|+|++||+|+|
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 69999999999999999986
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model. |
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.6e-05 Score=97.88 Aligned_cols=192 Identities=13% Similarity=0.077 Sum_probs=110.1
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccc-eEEEEeeccccccccHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEG-SYFACNVRAAEETGRLDDLRKE 261 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~l~~~ 261 (1866)
....++||-+..++.|...+..+. -.+.+.++|..|+||||+|+.+++.+-..-.. .--+. . ...........
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-~----~PCG~C~sC~~ 86 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-A----QPCGQCRACTE 86 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-C----CCCcccHHHHH
Confidence 345679999999999999998543 34567899999999999999999865331000 00000 0 00000000000
Q ss_pred HHHHHhccccccCc---cchhHHHHHHH--------hhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEcccc
Q 000202 262 LLSKLLNDRNVKNF---QNISVNFQSKR--------LARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDK 328 (1866)
Q Consensus 262 ll~~~~~~~~~~~~---~~~~~~~l~~~--------L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~ 328 (1866)
+... ...+...+ .+...+.+++. ..++.-++|||+++ +....+.|+..+.....+.++|++|.+.
T Consensus 87 I~aG--~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 87 IDAG--RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred HHcC--CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 0000 00000000 00011111111 23456689999998 4567788888777656677766655544
Q ss_pred -chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 329 -QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 329 -~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
.+.... .....++++.++.++..+.+.+.+-... .....+..+.|++.++|.|.
T Consensus 165 ~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg--i~~d~eAL~~IA~~A~Gs~R 220 (700)
T PRK12323 165 QKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG--IAHEVNALRLLAQAAQGSMR 220 (700)
T ss_pred HhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 443222 2246789999999999988876653221 11223456778999999875
|
|
| >COG3903 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.4e-06 Score=101.98 Aligned_cols=222 Identities=18% Similarity=0.210 Sum_probs=146.8
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRL 287 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L 287 (1866)
..+.+.++|.|||||||++.++.. +...|+..+++.+...........-. +...+. -.. .........+..+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~---~ag~~g-l~~--~~g~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPT---LAGALG-LHV--QPGDSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHH---HHhhcc-ccc--ccchHHHHHHHHHH
Confidence 467899999999999999999999 88899888888777664333222111 111111 111 01112224566778
Q ss_pred hcCcEEEEEecCCCHH-HHHHHhhccCCCCCCCEEEEEccccchhccCccceeeecCCCCHH-HHHHHHHhhcCCCC---
Q 000202 288 ARKKVLIVFDDVNHPR-QIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHA-DAHKLFTQCAFRGD--- 362 (1866)
Q Consensus 288 ~~k~~LlVlDdv~~~~-~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~--- 362 (1866)
.+++.++|+||-.... +-..+...+....+.-+|+.|+|..-.. ..+..+.+++|+.. ++.++|...+....
T Consensus 86 ~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 86 GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 8999999999987532 3333444444445667899999976433 34567888888877 79999976653111
Q ss_pred CCChhHHHHHHHHHHHhCCCcceeeeecccccCCCHHHHHHHHH----HhccC------CCchhhhhhhcccCCCChhhH
Q 000202 363 HLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMR----KLEIV------PHMEIQEVLKISYDSLDDSQK 432 (1866)
Q Consensus 363 ~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~~~~~w~~~l~----~l~~~------~~~~i~~~l~~Sy~~L~~~~k 432 (1866)
...........+|++...|.||+|..+++..+.....+-.+.++ .+... ........+..||.-|+.-++
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 12233456688999999999999999999998876655433333 22211 123356778888888888777
Q ss_pred HHHHHHH
Q 000202 433 RMHDLLR 439 (1866)
Q Consensus 433 ~~~~~l~ 439 (1866)
-.+.-|+
T Consensus 243 ~~~~rLa 249 (414)
T COG3903 243 ALFGRLA 249 (414)
T ss_pred HHhcchh
Confidence 6666665
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.1e-05 Score=98.97 Aligned_cols=187 Identities=16% Similarity=0.131 Sum_probs=109.1
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....++||.+...+.|..++..+. -...+.++|..|+||||+|+.+++.+-.... ... ..+... ...+.+
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~----~~~-~pCg~C----~sC~~I 81 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETG----VTS-TPCEVC----ATCKAV 81 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcC----CCC-CCCccC----HHHHHH
Confidence 345689999999999999998543 3467899999999999999999986532110 000 000000 000000
Q ss_pred HHHHhccccccC---ccchhHHHHHHH--------hhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 263 LSKLLNDRNVKN---FQNISVNFQSKR--------LARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 263 l~~~~~~~~~~~---~~~~~~~~l~~~--------L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
.. +...+... ......+.+++. ..+++-++|+|+|+. ....+.++..+....++.++|++|.+.+
T Consensus 82 ~~--g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~ 159 (702)
T PRK14960 82 NE--GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQ 159 (702)
T ss_pred hc--CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChH
Confidence 00 00000000 000001111111 235667899999984 5567777777766566778888876643
Q ss_pred hhc-c-CccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 330 VLT-N-CEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 330 v~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
-.. . ......+++++++.++..+.+.+.+-... ..-..+....|++.++|-+
T Consensus 160 kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg--I~id~eAL~~IA~~S~GdL 213 (702)
T PRK14960 160 KLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ--IAADQDAIWQIAESAQGSL 213 (702)
T ss_pred hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCH
Confidence 221 1 12346889999999999888876653222 1223455677888888754
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.9e-05 Score=94.01 Aligned_cols=181 Identities=12% Similarity=0.180 Sum_probs=104.8
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc-cccceEEEEeeccccccccHHHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR-HFEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
|....+++|.+..++.|..++..+. ..-+.++|.+|+||||+|..+++.+.. .|...+.-.+... ... .+..+
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd---~~~-~~~vr 82 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD---DRG-IDVVR 82 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc---ccc-HHHHH
Confidence 3445678999998998988877542 334679999999999999999997633 3332211111100 001 11222
Q ss_pred HHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcccc-chhccC-cc
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDK-QVLTNC-EV 336 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~ 336 (1866)
+.......... .. -.++.-++|||+++. ...-..+...+...++.+++|+|+... .+.... ..
T Consensus 83 ~~i~~~~~~~~--~~-----------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR 149 (319)
T PLN03025 83 NKIKMFAQKKV--TL-----------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR 149 (319)
T ss_pred HHHHHHHhccc--cC-----------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh
Confidence 22221111100 00 023456899999984 344455555555556678888777543 222211 12
Q ss_pred ceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 337 DHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 337 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
..++++++++.++....+...+-..... -..+....|++.++|-.
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~~~egi~--i~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVVEAEKVP--YVPEGLEAIIFTADGDM 194 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCH
Confidence 3578999999999988887766322211 12345677778777644
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=4e-05 Score=96.97 Aligned_cols=190 Identities=15% Similarity=0.146 Sum_probs=111.6
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc--cccceEEEEeeccccccccHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR--HFEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
....++||-+...+.|..++..+. -...+.++|++|+||||+|+.+++.+.. .++..|+.+.....-......++
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv-- 87 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDV-- 87 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCce--
Confidence 344679999999999998888643 3456799999999999999999986642 23334443321110000000000
Q ss_pred HHHHHHhccccccCccchhHHHHHHH-----hhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcccc-chhc
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKR-----LARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDK-QVLT 332 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~ 332 (1866)
..+... . ...-.....+.+. ..+++-++|||+++. ...++.++..+....+...+|++|... .+..
T Consensus 88 ---~el~~~-~--~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 88 ---LEIDAA-S--NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPP 161 (504)
T ss_pred ---EEeccc-c--cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCCh
Confidence 000000 0 0000000112221 234566899999984 456777877776655666666666443 3322
Q ss_pred cC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 333 NC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 333 ~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.. .....+++.+++.++..+.+.+.+-.... .-..+.+..|++.++|.+
T Consensus 162 ~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi--~i~~~Al~~ia~~s~Gdl 211 (504)
T PRK14963 162 TILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR--EAEPEALQLVARLADGAM 211 (504)
T ss_pred HHhcceEEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 22 23468999999999999999876633221 113456788899998866
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=98.06 E-value=7e-05 Score=93.92 Aligned_cols=173 Identities=16% Similarity=0.139 Sum_probs=99.6
Q ss_pred ccchhhHHHHH---HHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 979 AVNYTQRNVRK---IFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 979 ~~~~~~~~~~~---i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
.++|+++.+.. +.+.+.......+.++|++|+||||||+.+++.. ...| +.++.......-.+.+.+
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~--~~~~-----~~l~a~~~~~~~ir~ii~--- 82 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT--DAPF-----EALSAVTSGVKDLREVIE--- 82 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh--CCCE-----EEEecccccHHHHHHHHH---
Confidence 45555554433 5566666666778899999999999999996532 2222 222221111111122221
Q ss_pred cCCCCccCHHHHHHHHHHH-hCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEE--ccCChhh--hc-cCCCCcE
Q 000202 1056 LHCKDRETDAQVAEKLWQV-LNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFM--ASRELDV--CR-NMDVNMV 1127 (1866)
Q Consensus 1056 ~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Iiv--TTR~~~v--~~-~~~~~~~ 1127 (1866)
..... ..+++.+|++|+++.. .+.+.+...+. .|..+++ ||.+... .. ...-..+
T Consensus 83 --------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~ 145 (413)
T PRK13342 83 --------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQV 145 (413)
T ss_pred --------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhcccee
Confidence 11111 2467889999999863 44555544443 3455554 3443321 11 1111268
Q ss_pred EEecCCChHHHHHHHHHHhcCCC-CC-chHHHHHHHHHHHcCCChHHHHHHHH
Q 000202 1128 VKLETLSMKDAWELFCKEVGGII-QS-PDIHLYARAIVKGCCGLPLLTIVTAK 1178 (1866)
Q Consensus 1128 ~~l~~L~~~~a~~Lf~~~~~~~~-~~-~~~~~~~~~I~~~c~GlPLAi~~~g~ 1178 (1866)
+.+++++.++...++.+.+.... .. +-..+....|++.|+|.+..+..+..
T Consensus 146 ~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 146 FELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred eEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 89999999999999988653211 11 11244567789999999976654443
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.9e-06 Score=83.68 Aligned_cols=120 Identities=15% Similarity=0.116 Sum_probs=77.6
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
.+++.|.|+-|+|||||+++++++.. .-...+|+..... .... .. ... ..+.+.+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~--------~~~~-~~----------~~~--~~~~~~~~~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDP--------RDRR-LA----------DPD--LLEYFLELIK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCH--------HHHH-Hh----------hhh--hHHHHHHhhc
Confidence 35899999999999999999998665 2234445432111 0000 00 000 1122333334
Q ss_pred cCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccchhcc------CccceeeecCCCCHHHH
Q 000202 289 RKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTN------CEVDHIYQMKELVHADA 350 (1866)
Q Consensus 289 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~------~~~~~~~~l~~L~~~ea 350 (1866)
.++.+|+||+|.....|......+-..++..+|++|+.+...+.. .+....+++.||+..|-
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 478899999999887787777666655567899999988766532 13345689999998773
|
|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.9e-05 Score=97.56 Aligned_cols=172 Identities=19% Similarity=0.255 Sum_probs=99.3
Q ss_pred CCCceeehhhHHHHHHhhhcC-----------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccc
Q 000202 185 SKDLIGVEWRIKEIESLLRTG-----------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETG 253 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~~-----------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (1866)
..++.|++..++++.+.+... -...+-+.|+|++|+|||++|++++++....| +....
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~-----~~v~~------ 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRVVG------ 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE-----Eecch------
Confidence 357899999999998876421 12245689999999999999999999776544 21111
Q ss_pred cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccCCC--
Q 000202 254 RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLDRF-- 315 (1866)
Q Consensus 254 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~-- 315 (1866)
..+.... .+... ..........-...+.+|+||+++.. ..+..++..+..+
T Consensus 190 --~~l~~~~----~g~~~-----~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 --SELVRKY----IGEGA-----RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred --HHHHHHh----hhHHH-----HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 0111111 00000 00011111112346789999998742 1233333333222
Q ss_pred CCCCEEEEEccccchhc-----cCccceeeecCCCCHHHHHHHHHhhcCCCCCCC-hhHHHHHHHHHHHhCCC
Q 000202 316 ASGSQVIITTRDKQVLT-----NCEVDHIYQMKELVHADAHKLFTQCAFRGDHLD-AGYTELAHKALKYAQGV 382 (1866)
Q Consensus 316 ~~gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~Gl 382 (1866)
..+.+||.||.....+. ....+..++++..+.++..++|..++.+..... .. ...+++.+.|.
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~ 327 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGA 327 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCC
Confidence 24677888887543321 112356789999999999999998775433221 12 34566666654
|
Many proteins may score above the trusted cutoff because an internal |
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.6e-06 Score=90.62 Aligned_cols=50 Identities=26% Similarity=0.438 Sum_probs=35.6
Q ss_pred CceeehhhHHHHHHhhh-cCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 187 DLIGVEWRIKEIESLLR-TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
.||||+.+++++...|. ..+...+.+.|+|.+|+|||+|.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999994 233457889999999999999999999987776
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00027 Score=85.48 Aligned_cols=195 Identities=16% Similarity=0.161 Sum_probs=114.9
Q ss_pred ccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc----ccceEEEEeeccccccccHH
Q 000202 181 FQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH----FEGSYFACNVRAAEETGRLD 256 (1866)
Q Consensus 181 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~ 256 (1866)
.|.....++|-+...+.+...+..+. -...+.|+|..|+||||+|..+++.+-.. +..... . ......
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~----~---~~~~~c 89 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL----A---DPDPAS 89 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc----C---CCCCCC
Confidence 45566789999999999999998653 45578999999999999999999966442 111100 0 000001
Q ss_pred HHHHHHHHH-------Hhcccccc--C-ccchhHH---HHHHHh-----hcCcEEEEEecCC--CHHHHHHHhhccCCCC
Q 000202 257 DLRKELLSK-------LLNDRNVK--N-FQNISVN---FQSKRL-----ARKKVLIVFDDVN--HPRQIELLIGRLDRFA 316 (1866)
Q Consensus 257 ~l~~~ll~~-------~~~~~~~~--~-~~~~~~~---~l~~~L-----~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~ 316 (1866)
...+.+... +....+.. . ......+ .+.+.+ .+++-++|+|+++ +....+.++..+....
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp 169 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP 169 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence 111222111 00000000 0 0111112 222232 3466789999998 4556677776666545
Q ss_pred CCCEEEEEcccc-chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceee
Q 000202 317 SGSQVIITTRDK-QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALK 387 (1866)
Q Consensus 317 ~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 387 (1866)
....+|++|... .+.... .....+++.+++.++..+++....... . -..+.+..+++.++|.|....
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~-~~~~~~~~i~~~s~G~pr~Al 238 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ---G-SDGEITEALLQRSKGSVRKAL 238 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---C-CCHHHHHHHHHHcCCCHHHHH
Confidence 566655555444 332221 224689999999999999998743211 1 123456789999999998544
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.3e-05 Score=98.81 Aligned_cols=177 Identities=14% Similarity=0.159 Sum_probs=105.0
Q ss_pred cccCCCceeehhhHHHHHHhhhcC--CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTG--SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~--~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
|....+++|.+..++.+..|+..- +...+.+.|+|.+|+||||+|.++++.+. |+. +.+. ... .. .....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-ieln-asd---~r-~~~~i 81 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IELN-ASD---QR-TADVI 81 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEc-ccc---cc-cHHHH
Confidence 344567999999999999998742 22267899999999999999999999763 221 1111 111 11 11222
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH------HHHHHHhhccCCCCCCCEEEEEccccchh-c
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP------RQIELLIGRLDRFASGSQVIITTRDKQVL-T 332 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~ 332 (1866)
.++......... ....++-+||||+++.. ..+..+...+. ..+..||+|+.+..-. .
T Consensus 82 ~~~i~~~~~~~s--------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 82 ERVAGEAATSGS--------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSL 145 (482)
T ss_pred HHHHHHhhccCc--------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccch
Confidence 222222211111 01136779999999753 23555554443 2345577776543211 1
Q ss_pred -cC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 333 -NC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 333 -~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
.. .....+++++++.++....+...+...... -..+....|++.++|-.-
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR 197 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLR 197 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 11 234678999999999888887665332211 124567788888877543
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.1e-06 Score=73.75 Aligned_cols=58 Identities=28% Similarity=0.481 Sum_probs=25.9
Q ss_pred CCcEEEccCCCCCCCC-hhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCC
Q 000202 1423 SLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTE 1480 (1866)
Q Consensus 1423 ~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~ 1480 (1866)
+|++|++++|+++.+| ..+..+++|++|++++|.+...-|..+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3444444444444444 233444444444444444333333344444455555554443
|
... |
| >PTZ00202 tuzin; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.8e-05 Score=91.90 Aligned_cols=194 Identities=13% Similarity=0.105 Sum_probs=113.3
Q ss_pred ccCCCcccccCccc--hhhhhhHHHHhhcccc------cccccCCCceeehhhHHHHHHhhhcCC-CCcEEEEEEecCCC
Q 000202 150 DLSGFDSCVIRPES--RLVADIANEVLERLDD------TFQSESKDLIGVEWRIKEIESLLRTGS-AGVYKLGIWGIGGI 220 (1866)
Q Consensus 150 ~~~g~~~~~~~~e~--~~i~~i~~~v~~~l~~------~~~~~~~~~vGr~~~l~~l~~~L~~~~-~~~~~i~I~G~gGi 220 (1866)
..-||.+++...+. -.++-.++...+.+++ ..|....+|+||+.++.+|...|...+ ...+++.|.|++|+
T Consensus 218 ~vF~wn~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~ 297 (550)
T PTZ00202 218 SVFGWNFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGC 297 (550)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCC
Confidence 34556666554322 1233445555555444 246677899999999999999997433 23568999999999
Q ss_pred chhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHH-----Hhh-cCcEEE
Q 000202 221 GKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSK-----RLA-RKKVLI 294 (1866)
Q Consensus 221 GKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~-----~L~-~k~~Ll 294 (1866)
|||||++.+..... ..+++.+.+ ...+++..++.+++.... .........+.+ ... +++.+|
T Consensus 298 GKTTLlR~~~~~l~----~~qL~vNpr------g~eElLr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVL 365 (550)
T PTZ00202 298 GKSSLCRSAVRKEG----MPAVFVDVR------GTEDTLRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLL 365 (550)
T ss_pred CHHHHHHHHHhcCC----ceEEEECCC------CHHHHHHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 99999999997653 235555443 346788888888775322 111111122222 223 677777
Q ss_pred EEecC--CCHH-HHHHHhhccCCCCCCCEEEEEccccchhcc---CccceeeecCCCCHHHHHHHHHh
Q 000202 295 VFDDV--NHPR-QIELLIGRLDRFASGSQVIITTRDKQVLTN---CEVDHIYQMKELVHADAHKLFTQ 356 (1866)
Q Consensus 295 VlDdv--~~~~-~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~ 356 (1866)
|+-== .+.. ...+.. .+.....-|+|++----+.+-.. ...-..|-+++++.++|.+.-..
T Consensus 366 II~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 366 VLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred EEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhh
Confidence 77422 2211 111111 11122345788875443332111 12236789999999999876553
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=4e-05 Score=94.19 Aligned_cols=190 Identities=15% Similarity=0.144 Sum_probs=109.4
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcccc---ceEEEEeeccccccccHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFE---GSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
....++||-+..++.|..++..+. -...+.++|..|+||||+|+.+++.+..... ..|..+. .-..+.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~--------sC~~i~ 85 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT--------SCLEIT 85 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc--------HHHHHH
Confidence 445679999999999999988543 2346789999999999999999986543211 0111110 000111
Q ss_pred HHHHHHHhccccccCccchhHHHHHHH-----hhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccc-cchh
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKR-----LARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRD-KQVL 331 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~ 331 (1866)
......+..-.............+.+. ..++.-++|+|+++ +.+.+++++..+........+|++|.+ ..+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 000000000000000000000111111 24566799999998 466788888777654556665555544 3333
Q ss_pred ccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 332 TNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 332 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
... .....|.+.+++.++..+.+.+.+-... ..-..+....|++.++|.+
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg--i~~e~eAL~~Ia~~S~Gd~ 216 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN--VQYDQEGLFWIAKKGDGSV 216 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCChH
Confidence 222 2246799999999998888877653222 1223456788999999876
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.1e-06 Score=103.97 Aligned_cols=173 Identities=31% Similarity=0.380 Sum_probs=132.2
Q ss_pred EEEccCCCC-CCCCCCCCCCcccEEEccCCcCCcccChhHHhcCC-CCcEEEccCCCCCCCChhhcCCCCCcEEeccccc
Q 000202 1379 MIFFMDNDL-QTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMT-SLKVLNLSKTRIKSLPETLVNLKCLQILILRDCD 1456 (1866)
Q Consensus 1379 ~l~l~~~~l-~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~-~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~ 1456 (1866)
.+.+..+.+ .........+.+..|.+.+| .+..+|+.. ..+. +|+.|++++|.+..+|..++.+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n-~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNN-NITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCc-ccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 466666666 34444556678999999877 677888765 5564 8999999999999999999999999999999998
Q ss_pred CcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeeccc
Q 000202 1457 FLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDV 1536 (1866)
Q Consensus 1457 ~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~ 1536 (1866)
+..+|...+.+.+|+.|++++|.+..+|..++.+..|+.|.+.+.. ... ....+..+.++..|.+..
T Consensus 175 -l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~------~~~------~~~~~~~~~~l~~l~l~~ 241 (394)
T COG4886 175 -LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS------IIE------LLSSLSNLKNLSGLELSN 241 (394)
T ss_pred -hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc------cee------cchhhhhcccccccccCC
Confidence 6678888878999999999999999999988888889999886432 111 112355677777776553
Q ss_pred CCCCCccccccccccccccCCCCCCEEEeecCCccchH
Q 000202 1537 HPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVA 1574 (1866)
Q Consensus 1537 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 1574 (1866)
+. ....+..+..+..|+.|+++.|.+..++
T Consensus 242 n~--------~~~~~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 242 NK--------LEDLPESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred ce--------eeeccchhccccccceeccccccccccc
Confidence 22 2223566788888999999999887765
|
|
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.1e-05 Score=86.63 Aligned_cols=149 Identities=18% Similarity=0.343 Sum_probs=94.6
Q ss_pred cccCCCceeehhhHHH---HHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 182 QSESKDLIGVEWRIKE---IESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~---l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
|....+.||.+..+.+ |.+++.. +....+.+||.+|+||||||+.++..-+.. ...|+..+......+..+++
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ieq--~~ipSmIlWGppG~GKTtlArlia~tsk~~--SyrfvelSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIEQ--NRIPSMILWGPPGTGKTTLARLIASTSKKH--SYRFVELSATNAKTNDVRDI 209 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHHc--CCCCceEEecCCCCchHHHHHHHHhhcCCC--ceEEEEEeccccchHHHHHH
Confidence 4445677777766644 4444443 346678899999999999999999854332 13455544432222222333
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEE--Eccccchhcc-
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVII--TTRDKQVLTN- 333 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~~~- 333 (1866)
.++.- -...+.++|.+|.+|.|. +..|-+.|++. ...|+-++| ||.++..--.
T Consensus 210 fe~aq-------------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~---VE~G~I~lIGATTENPSFqln~ 267 (554)
T KOG2028|consen 210 FEQAQ-------------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPH---VENGDITLIGATTENPSFQLNA 267 (554)
T ss_pred HHHHH-------------------HHHhhhcceeEEEeHHhhhhhhhhhhcccce---eccCceEEEecccCCCccchhH
Confidence 22211 112367889999999996 45566666544 466887776 7777754211
Q ss_pred --CccceeeecCCCCHHHHHHHHHh
Q 000202 334 --CEVDHIYQMKELVHADAHKLFTQ 356 (1866)
Q Consensus 334 --~~~~~~~~l~~L~~~ea~~Lf~~ 356 (1866)
.....++-+++|+.++-..++.+
T Consensus 268 aLlSRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 268 ALLSRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred HHHhccceeEeccCCHHHHHHHHHH
Confidence 12346888999999999888876
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.9e-05 Score=96.82 Aligned_cols=189 Identities=14% Similarity=0.093 Sum_probs=110.2
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....++||-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+-..... . . ..........++
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~----~-~----~pCg~C~~C~~i 82 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI----T-A----TPCGECDNCREI 82 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC----C-C----CCCCCCHHHHHH
Confidence 445689999999999999988543 34557899999999999999999865432100 0 0 000000011111
Q ss_pred HHH----HhccccccCccchh-HHHHHH-----HhhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccccc-
Q 000202 263 LSK----LLNDRNVKNFQNIS-VNFQSK-----RLARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDKQ- 329 (1866)
Q Consensus 263 l~~----~~~~~~~~~~~~~~-~~~l~~-----~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~- 329 (1866)
... +..-.. ......+ ...+.+ -..+++-++|||+++ +....+.|+..+.......++|++|.+.+
T Consensus 83 ~~g~~~D~ieida-as~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~k 161 (647)
T PRK07994 83 EQGRFVDLIEIDA-ASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (647)
T ss_pred HcCCCCCceeecc-cccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccc
Confidence 000 000000 0000000 011111 124567799999997 46677888877776666777776666553
Q ss_pred hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 330 VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 330 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
+.... .....|.+++|+.++..+.+...+-... .....+....|++.++|.+-
T Consensus 162 Ll~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~--i~~e~~aL~~Ia~~s~Gs~R 215 (647)
T PRK07994 162 LPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ--IPFEPRALQLLARAADGSMR 215 (647)
T ss_pred cchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 33221 2257899999999999988876542111 11224556778888988764
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=7.8e-05 Score=94.36 Aligned_cols=177 Identities=14% Similarity=0.126 Sum_probs=106.0
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc---------------------ccceE
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH---------------------FEGSY 241 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~ 241 (1866)
....++||-+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+... |...+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 345679999999999999887542 34567899999999999999999865421 11111
Q ss_pred EEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCC
Q 000202 242 FACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVN--HPRQIELLIGRLDRFASGS 319 (1866)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs 319 (1866)
.+..... ... +-.++++..+. ..-..+++-++|+|+++ +....+.|+..+......+
T Consensus 92 eidaas~----~gv-d~ir~ii~~~~----------------~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v 150 (546)
T PRK14957 92 EIDAASR----TGV-EETKEILDNIQ----------------YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYV 150 (546)
T ss_pred Eeecccc----cCH-HHHHHHHHHHH----------------hhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCc
Confidence 1110000 000 00111111100 00123566799999998 4566778887777666677
Q ss_pred EEEEEcccc-chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 320 QVIITTRDK-QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 320 ~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.+|++|.+. .+.... ....++++++++.++..+.+.+.+-... .....+....|++.++|-+
T Consensus 151 ~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~Gdl 214 (546)
T PRK14957 151 KFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSL 214 (546)
T ss_pred eEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCH
Confidence 766555443 333221 2357899999999998877776442211 1223445667788887744
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.4e-05 Score=95.22 Aligned_cols=241 Identities=15% Similarity=0.110 Sum_probs=140.4
Q ss_pred ccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHH
Q 000202 181 FQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 181 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
+|....+.|-|..-+..+.. ..+.|.+.|.-++|.|||||+.++.. ....=..+.|+....+.+.. ..+..
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~dndp---~rF~~ 84 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESDNDP---ARFLS 84 (894)
T ss_pred CCCCcccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCccCCH---HHHHH
Confidence 34446678888776665543 23689999999999999999999988 33444668888755543333 44444
Q ss_pred HHHHHHhccccccCc--c-------chhH-HHHHHH---h--hcCcEEEEEecCC---CHHHHHHHhhccCCCCCCCEEE
Q 000202 261 ELLSKLLNDRNVKNF--Q-------NISV-NFQSKR---L--ARKKVLIVFDDVN---HPRQIELLIGRLDRFASGSQVI 322 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~--~-------~~~~-~~l~~~---L--~~k~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~Ii 322 (1866)
.++..+....+.... . .... ..+... + -.++..+||||-. ++.--..+.-.+.+..++-..|
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lv 164 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLV 164 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEE
Confidence 555444422210000 0 0001 112222 2 2468899999975 3322222222233445688999
Q ss_pred EEccccchhccC---ccceeeecC----CCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecccccC
Q 000202 323 ITTRDKQVLTNC---EVDHIYQMK----ELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCG 395 (1866)
Q Consensus 323 iTTR~~~v~~~~---~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~ 395 (1866)
||||...-+.-. -.+..++++ .++.+|+-++|..... . +-....++.+.+..+|-+-||..++=.+++
T Consensus 165 v~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~--l---~Ld~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 165 VTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS--L---PLDAADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred EEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC--C---CCChHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 999988433221 113445554 4899999999986651 1 112345788999999999998887776663
Q ss_pred -CCHHHHHHHHHHhccCCCchhhhhh-hcccCCCChhhHHHHHHHH
Q 000202 396 -RSKEEWESAMRKLEIVPHMEIQEVL-KISYDSLDDSQKRMHDLLR 439 (1866)
Q Consensus 396 -~~~~~w~~~l~~l~~~~~~~i~~~l-~~Sy~~L~~~~k~~~~~l~ 439 (1866)
.+.+.-. ..+... ...|.+-| .-=+|.||++.|....-++
T Consensus 240 ~~~~~q~~---~~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~s 281 (894)
T COG2909 240 NTSAEQSL---RGLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTS 281 (894)
T ss_pred CCcHHHHh---hhccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2333211 111110 11121111 2225789999998877776
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.8e-05 Score=97.79 Aligned_cols=189 Identities=15% Similarity=0.124 Sum_probs=105.7
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....++||.+..++.|..++..+. -.+.+.++|..|+||||+|+.+++.+...-... ... .+. ......+
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-~~p-Cg~-------C~sCr~i 82 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-GEP-CGV-------CQSCTQI 82 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-CCC-Ccc-------cHHHHHH
Confidence 345689999999999999998543 345789999999999999999998643211000 000 000 0000000
Q ss_pred HHH-HhccccccCccchhHHHHHHH--------hhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccc-h
Q 000202 263 LSK-LLNDRNVKNFQNISVNFQSKR--------LARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQ-V 330 (1866)
Q Consensus 263 l~~-~~~~~~~~~~~~~~~~~l~~~--------L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v 330 (1866)
... ...-...........+.+++. ..+++-++|||+++. ....+.++..+......+++|++|.+.+ +
T Consensus 83 ~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred hccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 000 000000000000011111111 124567899999984 3446666666655455677777776543 2
Q ss_pred hccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 331 LTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 331 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.... +....+++++++.++....+.+.+-.... .-..+....|++.++|.+
T Consensus 163 ~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi--~id~eAL~~Ia~~A~Gsl 214 (709)
T PRK08691 163 PVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI--AYEPPALQLLGRAAAGSM 214 (709)
T ss_pred chHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHhCCCH
Confidence 2111 22356788899999998888766532221 123456778888888765
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=9.4e-05 Score=90.30 Aligned_cols=182 Identities=12% Similarity=0.111 Sum_probs=105.9
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....+++|++..++.+..++..+. ...+.|+|.+|+||||+|+.+++..........++..... .... .....+.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~--~~~~-~~~~~~~ 88 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNAS--DERG-IDVIRNK 88 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccc--cccc-hHHHHHH
Confidence 344679999999999999987543 3357999999999999999999876433211122221100 1111 1111111
Q ss_pred HHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccc-hhccC-ccce
Q 000202 263 LSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQ-VLTNC-EVDH 338 (1866)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~ 338 (1866)
+.......+ .....+-++|+|+++. .+..+.+...+....+.+++|+++.... +.... ....
T Consensus 89 i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 89 IKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 111111110 0012356899999874 3344555555555556677887775332 21111 1234
Q ss_pred eeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce
Q 000202 339 IYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 339 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
.+++++++.++....+...+-.... .-.++....+++.++|.+--
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~--~i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGI--EITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 6899999999998888776633221 11245677788888887543
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.3e-06 Score=73.00 Aligned_cols=60 Identities=37% Similarity=0.607 Sum_probs=53.0
Q ss_pred CcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEecccccC
Q 000202 1397 PNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDCDF 1457 (1866)
Q Consensus 1397 ~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~ 1457 (1866)
++|++|++++| .+..+|+..|..+++|++|++++|.+..+| ..+..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 47889999987 788999888899999999999999999887 5789999999999999863
|
... |
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00013 Score=88.24 Aligned_cols=175 Identities=15% Similarity=0.219 Sum_probs=109.5
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc-----cccceEEEEeeccccccccHHHHHH
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR-----HFEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~-----~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
.+++|-+..++.+...+..+. -.+...++|+.|+||||+|+++++.+.. .++....+..... ..-.... .+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~--~~i~v~~-ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINK--KSIGVDD-IR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccC--CCCCHHH-HH
Confidence 467898888899999987543 3567789999999999999999996532 1222222211000 0011111 22
Q ss_pred HHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccccchh-ccC-cc
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDKQVL-TNC-EV 336 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~~-~~ 336 (1866)
++...+.... ..+++-++|+|+++ +...++.++..+....+++.+|++|.+.+.+ ... ..
T Consensus 80 ~~~~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 80 NIIEEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHHHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 2222221110 12344455666664 6778889998888878899999888766433 111 22
Q ss_pred ceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCccee
Q 000202 337 DHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLAL 386 (1866)
Q Consensus 337 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl 386 (1866)
..++++.+++.++....+.+... + . ..+.+..++.+++|.|.-+
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~-~--~---~~~~~~~l~~~~~g~~~~a 187 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYN-D--I---KEEEKKSAIAFSDGIPGKV 187 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhc-C--C---CHHHHHHHHHHcCCCHHHH
Confidence 46899999999999887765431 1 1 1334678899999988643
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.1e-05 Score=86.49 Aligned_cols=164 Identities=17% Similarity=0.098 Sum_probs=91.6
Q ss_pred CCCceeehhh-HHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHH
Q 000202 185 SKDLIGVEWR-IKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELL 263 (1866)
Q Consensus 185 ~~~~vGr~~~-l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 263 (1866)
.++||+.... +..+..+.. + .....+.|+|.+|+|||+||.++++....+...+.|+.... ....+.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~----------~~~~~~ 85 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA----------AAGRLR 85 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH----------hhhhHH
Confidence 4566655543 333333332 2 23356999999999999999999997666544556654111 111110
Q ss_pred HHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH---HHH-HHHhhccCC-CCCCCEEEEEccccc---------
Q 000202 264 SKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP---RQI-ELLIGRLDR-FASGSQVIITTRDKQ--------- 329 (1866)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~IiiTTR~~~--------- 329 (1866)
..+ +.+ .+.-+|||||++.. ..+ +.+...+.. ...|..||+||+...
T Consensus 86 -----------------~~~-~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 86 -----------------DAL-EAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred -----------------HHH-HHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence 001 112 12348999999732 112 222222211 134677999998542
Q ss_pred hhccCccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCC
Q 000202 330 VLTNCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQG 381 (1866)
Q Consensus 330 v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G 381 (1866)
+........++++++++.++-.+++.+++.... ..-.++...-|++.++|
T Consensus 147 L~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~--l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 147 LRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG--LALDEAAIDWLLTHGER 196 (233)
T ss_pred HHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhCCC
Confidence 112222245789999999999999998664221 11223445566666554
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.4e-05 Score=99.39 Aligned_cols=145 Identities=21% Similarity=0.376 Sum_probs=86.0
Q ss_pred ccCCCceeehhhHH---HHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHH
Q 000202 183 SESKDLIGVEWRIK---EIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~---~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
...++|||.+..+. .+.+.+..+ ....+.++|++|+||||||+.+++.....|. .+..+ ......+
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~-----~~~i~di- 93 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV-----LAGVKDL- 93 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh-----hhhhHHH-
Confidence 44567999998885 466666543 3456789999999999999999987655542 11100 0000111
Q ss_pred HHHHHHHhccccccCccchhHHHHHHH--hhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEE--ccccc--hh
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKR--LARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIIT--TRDKQ--VL 331 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~--L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiT--TR~~~--v~ 331 (1866)
++.+. ...+. ..+++.+||||||+ +..+.+.++..+. .|+.++|+ |++.. +.
T Consensus 94 r~~i~-----------------~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 94 RAEVD-----------------RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred HHHHH-----------------HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 11111 01111 12467799999997 4556667765543 35555553 44331 11
Q ss_pred ccC-ccceeeecCCCCHHHHHHHHHhhc
Q 000202 332 TNC-EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 332 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
... ....++.+++|+.++...++.+.+
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l 181 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRAL 181 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHH
Confidence 111 123578999999999988887654
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.2e-05 Score=80.07 Aligned_cols=123 Identities=18% Similarity=0.138 Sum_probs=69.6
Q ss_pred eeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhc
Q 000202 189 IGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLN 268 (1866)
Q Consensus 189 vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~ 268 (1866)
+|++..+..+...+... ..+.+.|+|.+|+||||+|+++++.....-...+++. ........ .........
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~~-~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEGL-VVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhhh-HHHHHhhhh-----
Confidence 47888889998888643 3457899999999999999999997653323333433 22110000 000000000
Q ss_pred cccccCccchhHHHHHHHhhcCcEEEEEecCCCH--HH---HHHHhhccCCC---CCCCEEEEEccccc
Q 000202 269 DRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP--RQ---IELLIGRLDRF---ASGSQVIITTRDKQ 329 (1866)
Q Consensus 269 ~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~---~~~l~~~~~~~---~~gs~IiiTTR~~~ 329 (1866)
............++.+||+||++.. .. +.......... ..+.+||+||....
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111223456789999999853 22 23333332221 36788888888653
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.7e-05 Score=104.51 Aligned_cols=103 Identities=26% Similarity=0.336 Sum_probs=89.8
Q ss_pred CcEEEccCCCCC-CCC-CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCC-CCChhhcCCCCCcEEecc
Q 000202 1377 AKMIFFMDNDLQ-TLP-GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIK-SLPETLVNLKCLQILILR 1453 (1866)
Q Consensus 1377 l~~l~l~~~~l~-~l~-~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~ 1453 (1866)
++.|++.+|.+. .+| .+..+++|+.|+|++|...+.+|..+ +.+++|++|+|++|.+. .+|..+++|.+|++|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 567888888887 455 46789999999999996666788776 88999999999999998 889999999999999999
Q ss_pred cccCcccCCccccCC-CCCcEEEccCCC
Q 000202 1454 DCDFLFVLPPEVGSL-ECLEVLDLRGTE 1480 (1866)
Q Consensus 1454 ~~~~~~~lP~~i~~L-~~L~~L~l~~~~ 1480 (1866)
+|.+.+.+|..++.+ .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 999999999998864 578889999885
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.1e-05 Score=81.30 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=78.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+++.|.|+.|+|||||+++++.+.. .-..+++++..+.........+ ..+.+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD-----------------LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh-----------------hHHHHHHhhccC
Confidence 35789999999999999999965333 2345667765543221110000 123333334447
Q ss_pred cEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhhccC------CCCcEEEecCCChHHH
Q 000202 1079 KFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVCRNM------DVNMVVKLETLSMKDA 1138 (1866)
Q Consensus 1079 r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~------~~~~~~~l~~L~~~~a 1138 (1866)
+.+|+||+|....+|......+.......+||+|+.+......- +....++|.||+..|.
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 88999999999888887766665555568999999877665321 1124678999987763
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00025 Score=90.41 Aligned_cols=171 Identities=15% Similarity=0.148 Sum_probs=93.7
Q ss_pred cCCCceeehhhHHHHHHhhhc---CCCCcEEEEEEecCCCchhHHHHHHHHhhhcc-----ccc--eEEEEeeccccccc
Q 000202 184 ESKDLIGVEWRIKEIESLLRT---GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH-----FEG--SYFACNVRAAEETG 253 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~---~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~-----f~~--~~~~~~~~~~~~~~ 253 (1866)
.++.++||+.++++|...|.. ++....++.|+|.+|+|||+.++.|.+++... .+. .+++. ... ..
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-Cm~---Ls 828 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-GMN---VV 828 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-CCc---cC
Confidence 457899999999999998874 23334567899999999999999999865432 221 22332 111 12
Q ss_pred cHHHHHHHHHHHHhccccccCccchh-HHHHHHHh-h--cCcEEEEEecCCCHH--HHHHHhhccCC-CCCCCEEEE--E
Q 000202 254 RLDDLRKELLSKLLNDRNVKNFQNIS-VNFQSKRL-A--RKKVLIVFDDVNHPR--QIELLIGRLDR-FASGSQVII--T 324 (1866)
Q Consensus 254 ~~~~l~~~ll~~~~~~~~~~~~~~~~-~~~l~~~L-~--~k~~LlVlDdv~~~~--~~~~l~~~~~~-~~~gs~Iii--T 324 (1866)
....+...+..++....+........ ...+...+ . ....+||||+|+... .-+.|...+.+ ...+++|+| +
T Consensus 829 tp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGI 908 (1164)
T PTZ00112 829 HPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAI 908 (1164)
T ss_pred CHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEe
Confidence 23445555555554333211111111 12222222 1 224589999997421 11112211111 124566554 3
Q ss_pred ccccc--------hhccCccceeeecCCCCHHHHHHHHHhhcC
Q 000202 325 TRDKQ--------VLTNCEVDHIYQMKELVHADAHKLFTQCAF 359 (1866)
Q Consensus 325 TR~~~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 359 (1866)
|.+-. +...++ ...+..++.+.++-.+++..++-
T Consensus 909 SNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 909 SNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred cCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHH
Confidence 43221 112222 22356799999999999988774
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00023 Score=79.25 Aligned_cols=160 Identities=16% Similarity=0.150 Sum_probs=95.6
Q ss_pred HHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc---------------------ccceEEEEeeccccccccH
Q 000202 197 EIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH---------------------FEGSYFACNVRAAEETGRL 255 (1866)
Q Consensus 197 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~~~~ 255 (1866)
.+.+.+..+. -...+.++|..|+||||+|+.+.+.+... ++...++..... ..-
T Consensus 3 ~l~~~i~~~~-~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~----~~~ 77 (188)
T TIGR00678 3 QLKRALEKGR-LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ----SIK 77 (188)
T ss_pred HHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC----cCC
Confidence 3445554331 24678899999999999999999876432 111112110000 000
Q ss_pred HHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcccc-chhc
Q 000202 256 DDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDK-QVLT 332 (1866)
Q Consensus 256 ~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~ 332 (1866)
.+..+++...+... -..+.+-++|+||++. .+..+.++..+....+.+.+|++|++. .+..
T Consensus 78 ~~~i~~i~~~~~~~----------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 78 VDQVRELVEFLSRT----------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLP 141 (188)
T ss_pred HHHHHHHHHHHccC----------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChH
Confidence 11111111111000 0134566899999974 455677777776666677788777654 2222
Q ss_pred cC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce
Q 000202 333 NC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 333 ~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
.. ....++++.+++.++..+.+.+.. . ..+.+..+++.++|.|..
T Consensus 142 ~i~sr~~~~~~~~~~~~~~~~~l~~~g-----i---~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 142 TIRSRCQVLPFPPLSEEALLQWLIRQG-----I---SEEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHhhcEEeeCCCCCHHHHHHHHHHcC-----C---CHHHHHHHHHHcCCCccc
Confidence 11 224689999999999988887761 1 145688999999998863
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00015 Score=88.92 Aligned_cols=174 Identities=16% Similarity=0.151 Sum_probs=105.5
Q ss_pred CCceeehhhHHHHHHhhhcCCC--------CcEEEEEEecCCCchhHHHHHHHHhhhccc--------------------
Q 000202 186 KDLIGVEWRIKEIESLLRTGSA--------GVYKLGIWGIGGIGKTTIAGAVFNKISRHF-------------------- 237 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~--------~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-------------------- 237 (1866)
.+++|-+..++.|...+..+.. -.+.+.++|++|+|||++|+.+++.+-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4688988888989988875431 246688999999999999999998553321
Q ss_pred cceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCC
Q 000202 238 EGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRF 315 (1866)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~ 315 (1866)
+...++...+ ..-.... .+++...+.. .-..+++-++|+|+++. ....+.++..+...
T Consensus 85 pD~~~i~~~~---~~i~i~~-iR~l~~~~~~----------------~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 85 PDVRVVAPEG---LSIGVDE-VRELVTIAAR----------------RPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CCEEEecccc---ccCCHHH-HHHHHHHHHh----------------CcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 1111111000 0000000 1111111100 00123455788899984 45556677766665
Q ss_pred CCCCEEEEEccccc-hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCccee
Q 000202 316 ASGSQVIITTRDKQ-VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLAL 386 (1866)
Q Consensus 316 ~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl 386 (1866)
.++..+|++|.+.. +.... .....+.+++++.++..+.+..... .. .+.+..++..++|.|...
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~----~~---~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG----VD---PETARRAARASQGHIGRA 210 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC----CC---HHHHHHHHHHcCCCHHHH
Confidence 66777777776643 33221 2246899999999999988874331 11 345778899999998643
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00011 Score=92.26 Aligned_cols=177 Identities=16% Similarity=0.134 Sum_probs=101.4
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc----cc-----------------ce
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH----FE-----------------GS 240 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~----f~-----------------~~ 240 (1866)
|....++||.+...+.|...+..+. -...+.++|++|+||||+|+.+++.+... +. ..
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 3445679999988888888877542 23567899999999999999999865321 10 01
Q ss_pred EEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCC
Q 000202 241 YFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASG 318 (1866)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~g 318 (1866)
..+... ....... .+++..... ..-..+++-++|+|+++. .++.+.++..+....+.
T Consensus 89 ~el~aa----~~~gid~-iR~i~~~~~----------------~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~ 147 (472)
T PRK14962 89 IELDAA----SNRGIDE-IRKIRDAVG----------------YRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH 147 (472)
T ss_pred EEEeCc----ccCCHHH-HHHHHHHHh----------------hChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc
Confidence 111100 0000011 111111100 001234567999999974 44566777666554445
Q ss_pred CEEEEEccc-cchhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 319 SQVIITTRD-KQVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 319 s~IiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
..+|++|.+ ..+.... ....++++.+++.++....+.+.+..... .-..+....|++.++|-
T Consensus 148 vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~Gd 211 (472)
T PRK14962 148 VVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGG 211 (472)
T ss_pred EEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCC
Confidence 555545443 2332221 22468899999999988888776632221 12245567778777543
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.3e-05 Score=89.73 Aligned_cols=90 Identities=18% Similarity=0.169 Sum_probs=63.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC--CCHHHHHHHHHHHhccCCCCccCHH------HHHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY--WNTRKIQKQVLRQLSLHCKDRETDA------QVAEK 1070 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~ 1070 (1866)
...++|+|.+|+|||||++.+|+..... +|+.++|+.++.. +++.++++.+...+-....+..... .....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999998866555 8999999997766 8999999998433322221211111 12222
Q ss_pred HHHH-hCCCcEEEEEeCCCC
Q 000202 1071 LWQV-LNGEKFLLLLDDVWE 1089 (1866)
Q Consensus 1071 l~~~-L~~kr~LlVlDdv~~ 1089 (1866)
.... -.|++.++++|++..
T Consensus 95 a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHCCCCEEEEEECHHH
Confidence 2222 358999999999965
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.5e-05 Score=87.15 Aligned_cols=166 Identities=14% Similarity=0.088 Sum_probs=94.1
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCH
Q 000202 985 RNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETD 1064 (1866)
Q Consensus 985 ~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~ 1064 (1866)
..++.+.+++.......|.|+|..|+|||+||+.+++... ......++++++.-. ...
T Consensus 24 ~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~------~~~-------------- 81 (226)
T TIGR03420 24 ELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELA------QAD-------------- 81 (226)
T ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHH------HhH--------------
Confidence 3555555555455566899999999999999999965422 122344556544321 110
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCcc---chh-hhcCCCCC-CCCCcEEEEccCChh---------hhccCCCCcEEEe
Q 000202 1065 AQVAEKLWQVLNGEKFLLLLDDVWEQI---DLE-AVGIPVPG-SENGSKIFMASRELD---------VCRNMDVNMVVKL 1130 (1866)
Q Consensus 1065 ~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gs~IivTTR~~~---------v~~~~~~~~~~~l 1130 (1866)
..+...+.+. -+|||||++... .|. .+...+.. ...+.++|+||+... +...+.....+++
T Consensus 82 ----~~~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l 156 (226)
T TIGR03420 82 ----PEVLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQL 156 (226)
T ss_pred ----HHHHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEec
Confidence 0111122232 389999998632 232 23322211 123457888887432 2222322467899
Q ss_pred cCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHH
Q 000202 1131 ETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAK 1178 (1866)
Q Consensus 1131 ~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~ 1178 (1866)
.+++.++...++.+.+..... +--.+..+.+++.+.|.|..+.-+..
T Consensus 157 ~~l~~~e~~~~l~~~~~~~~~-~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 157 PPLSDEEKIAALQSRAARRGL-QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred CCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 999999988888765432111 11123456677778888876655543
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.5e-05 Score=77.72 Aligned_cols=113 Identities=21% Similarity=0.265 Sum_probs=68.5
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhcc-----ccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHH
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRH-----FEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQ 283 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l 283 (1866)
.+.+.|+|.+|+|||+++.++++..... -...+|+.... ......+...++..+..............+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPS----SRTPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH----HSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCC----CCCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 4678999999999999999999976543 23344544222 23557788888888776655211111112455
Q ss_pred HHHhhcCc-EEEEEecCCCH---HHHHHHhhccCCCCCCCEEEEEccc
Q 000202 284 SKRLARKK-VLIVFDDVNHP---RQIELLIGRLDRFASGSQVIITTRD 327 (1866)
Q Consensus 284 ~~~L~~k~-~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~ 327 (1866)
.+.+...+ .+||+|+++.. +.++.+..... ..+.+||++.+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 55555544 59999999754 34455544333 567788887765
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00015 Score=90.41 Aligned_cols=178 Identities=16% Similarity=0.152 Sum_probs=109.0
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc---------------------cceE
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF---------------------EGSY 241 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~ 241 (1866)
....++||-+..++.|...+..+. -.+.+.++|..|+||||+|+.+++.+-..+ ..++
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 445689999999999988887543 245788999999999999999988542211 1112
Q ss_pred EEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCC
Q 000202 242 FACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVN--HPRQIELLIGRLDRFASGS 319 (1866)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs 319 (1866)
.+..... ....+ .+++....... -..+++-++|+|+++ +.+..+.++..+....+.+
T Consensus 89 eidaas~----~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v 147 (491)
T PRK14964 89 EIDAASN----TSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHV 147 (491)
T ss_pred EEecccC----CCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCe
Confidence 2211100 00011 11111111000 013455689999997 4556778887777666777
Q ss_pred EEEEEccc-cchhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 320 QVIITTRD-KQVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 320 ~IiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
++|++|.+ +.+.... .....+++++++.++..+.+.+.+..... .-..+....|++.++|.+-
T Consensus 148 ~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi--~i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 148 KFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI--EHDEESLKLIAENSSGSMR 212 (491)
T ss_pred EEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 77766643 3333222 23467899999999998888876643221 1224556778888887653
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00016 Score=92.75 Aligned_cols=188 Identities=13% Similarity=0.132 Sum_probs=107.0
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc----cceEEEEeeccccccccHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF----EGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~~l 258 (1866)
....++||-+..++.|..++..+. -...+.++|..|+||||+|+.+++.+-..= .+... ........
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~--------~pCg~C~~ 83 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA--------TPCGVCQA 83 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC--------CCCCccHH
Confidence 345679999998899999988643 356778999999999999999988553210 00000 00000000
Q ss_pred HHHHHHHHhccccccCc---cchhHHHHHHHh--------hcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEc
Q 000202 259 RKELLSKLLNDRNVKNF---QNISVNFQSKRL--------ARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITT 325 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~---~~~~~~~l~~~L--------~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTT 325 (1866)
...+.. +...+.... .+...+.+++.+ .++.-++|||+|+ +.+..+.++..+.......++|++|
T Consensus 84 C~~i~~--g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 84 CRDIDS--GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHc--CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 011100 000000000 001111222221 2345588999998 4667778887776655667777666
Q ss_pred cc-cchhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 326 RD-KQVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 326 R~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.+ ..+.... .....+++++++.++..+.+.+.+-.... .-..+....|++.++|-+
T Consensus 162 td~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi--~ie~~AL~~La~~s~Gsl 219 (618)
T PRK14951 162 TDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV--PAEPQALRLLARAARGSM 219 (618)
T ss_pred CCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 44 3333221 22478999999999998888766532221 112345677788887754
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00017 Score=90.76 Aligned_cols=185 Identities=17% Similarity=0.172 Sum_probs=108.6
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcccc-------ceEEEEeecccccccc
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFE-------GSYFACNVRAAEETGR 254 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~-------~~~~~~~~~~~~~~~~ 254 (1866)
|....++||-+..++.|...+..+. -.+.+.++|..|+||||+|+.+++.+-..-. ..|..+.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~--------- 86 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCT--------- 86 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCCh---------
Confidence 3445679999999999988776542 2456889999999999999999986532110 0111110
Q ss_pred HHHHHHHHHHHHhccccccCc---cchhHHHHHHH--------hhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEE
Q 000202 255 LDDLRKELLSKLLNDRNVKNF---QNISVNFQSKR--------LARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQV 321 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~---~~~~~~~l~~~--------L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~I 321 (1866)
....+... ...+.... .....+.+++. ..+++-++|+|+++. ...++.++..+....+.+.+
T Consensus 87 ---~C~~i~~~--~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vf 161 (507)
T PRK06645 87 ---NCISFNNH--NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIF 161 (507)
T ss_pred ---HHHHHhcC--CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEE
Confidence 00000000 00000000 00001111111 235677899999985 56678888777665566666
Q ss_pred EE-EccccchhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 322 II-TTRDKQVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 322 ii-TTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
|+ ||+.+.+.... .....+++.+++.++..+.+...+-.... .-..+....|++.++|.+
T Consensus 162 I~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi--~ie~eAL~~Ia~~s~Gsl 223 (507)
T PRK06645 162 IFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL--KTDIEALRIIAYKSEGSA 223 (507)
T ss_pred EEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 65 55544443322 22467899999999999999877643221 112445677888888865
|
|
| >COG3899 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.1e-05 Score=100.36 Aligned_cols=252 Identities=17% Similarity=0.221 Sum_probs=143.5
Q ss_pred CceeehhhHHHHHHhhhcCCC-CcEEEEEEecCCCchhHHHHHHHHhhhcccc---ceEEEEeeccccccccHHHHHHHH
Q 000202 187 DLIGVEWRIKEIESLLRTGSA-GVYKLGIWGIGGIGKTTIAGAVFNKISRHFE---GSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~~~~-~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
.++||+.+++.|...+..-.. ...++.+.|..|||||+|+++|...+..++. ...|-.-.+.. .-..+....+.+
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~i-pl~~lvq~~r~l 79 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNI-PLSPLVQAFRDL 79 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCC-chHHHHHHHHHH
Confidence 378999999999988875432 3668999999999999999999997766521 11111000000 000011122222
Q ss_pred HHHH-------------------hccc------------------cccCccchhH---------HHHHHHh-hcCcEEEE
Q 000202 263 LSKL-------------------LNDR------------------NVKNFQNISV---------NFQSKRL-ARKKVLIV 295 (1866)
Q Consensus 263 l~~~-------------------~~~~------------------~~~~~~~~~~---------~~l~~~L-~~k~~LlV 295 (1866)
..++ +... ...+...... ..+.... +.++.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 2221 1100 0000000000 1122222 45699999
Q ss_pred EecCC--CHHHHHHHhhccCCCCC----CCEEE--EEcccc--chhccCccceeeecCCCCHHHHHHHHHhhcCCCCCCC
Q 000202 296 FDDVN--HPRQIELLIGRLDRFAS----GSQVI--ITTRDK--QVLTNCEVDHIYQMKELVHADAHKLFTQCAFRGDHLD 365 (1866)
Q Consensus 296 lDdv~--~~~~~~~l~~~~~~~~~----gs~Ii--iTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 365 (1866)
+||+. |...++.+......... -..|. .|.+.. .+.........+.+.||+..+.-.|.........
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~--- 236 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK--- 236 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc---
Confidence 99994 44444433222221110 11222 233322 1112223357899999999999999876663222
Q ss_pred hhHHHHHHHHHHHhCCCcceeeeecccccCC-------CHHHHHHHHHHhccCCC-chhhhhhhcccCCCChhhHHHHHH
Q 000202 366 AGYTELAHKALKYAQGVPLALKVLGCYLCGR-------SKEEWESAMRKLEIVPH-MEIQEVLKISYDSLDDSQKRMHDL 437 (1866)
Q Consensus 366 ~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~-------~~~~w~~~l~~l~~~~~-~~i~~~l~~Sy~~L~~~~k~~~~~ 437 (1866)
....+..+.|+++..|+|+-+..+-..+... +...|..-...+..... ..+.+.+..-.+.||...++.+.+
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~ 316 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKA 316 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2234668899999999999999887777543 23445544444433221 224445778889999999999999
Q ss_pred HHHHh
Q 000202 438 LRAMG 442 (1866)
Q Consensus 438 l~~~~ 442 (1866)
.+..|
T Consensus 317 AA~iG 321 (849)
T COG3899 317 AACIG 321 (849)
T ss_pred HHHhC
Confidence 99655
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.3e-06 Score=96.46 Aligned_cols=191 Identities=20% Similarity=0.195 Sum_probs=123.3
Q ss_pred cccccCcEEEccCCCCCCCC---CCCCCCcccEEEccCCcCCcccC-hhHHhcCCCCcEEEccCCCCCCCChh--hcCCC
Q 000202 1372 EEWTHAKMIFFMDNDLQTLP---GRPSCPNLLTLFLQRNCRLRVIP-PSFFELMTSLKVLNLSKTRIKSLPET--LVNLK 1445 (1866)
Q Consensus 1372 ~~~~~l~~l~l~~~~l~~l~---~~~~~~~L~~L~L~~~~~l~~~p-~~~~~~l~~L~~L~Ls~~~i~~lp~~--i~~L~ 1445 (1866)
.++++|+.+.+.+..+...+ ....|++++.|+|++|-.-.+.| ..+...+++|+.|+|+.|++...-.+ -..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 35678888888888777665 24579999999999984433333 35667899999999999987633222 23678
Q ss_pred CCcEEecccccCccc-CCccccCCCCCcEEEccCCC-CCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhh
Q 000202 1446 CLQILILRDCDFLFV-LPPEVGSLECLEVLDLRGTE-IKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDIL 1523 (1866)
Q Consensus 1446 ~L~~L~L~~~~~~~~-lP~~i~~L~~L~~L~l~~~~-i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l 1523 (1866)
+|+.|.|+.|.+... +-..+..+++|+.|+|.+|. +..--....-+..|+.|+++... ...++. .-.+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~------li~~~~----~~~~ 267 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN------LIDFDQ----GYKV 267 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc------cccccc----cccc
Confidence 999999999987632 22234567899999999994 32111223446788888886432 222221 1125
Q ss_pred hccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccch
Q 000202 1524 SRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECV 1573 (1866)
Q Consensus 1524 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 1573 (1866)
+.|+.|+.|+++.++... ...-..........+++|+.|++..|++...
T Consensus 268 ~~l~~L~~Lnls~tgi~s-i~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w 316 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIAS-IAEPDVESLDKTHTFPKLEYLNISENNIRDW 316 (505)
T ss_pred ccccchhhhhccccCcch-hcCCCccchhhhcccccceeeecccCccccc
Confidence 678888888887554321 0000001122235678999999998887543
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.3e-05 Score=86.54 Aligned_cols=173 Identities=16% Similarity=0.161 Sum_probs=92.9
Q ss_pred ccCCCce-eehhhH-HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHH
Q 000202 183 SESKDLI-GVEWRI-KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 183 ~~~~~~v-Gr~~~l-~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
...++|+ |..... ..+.++.. +....+.+.|+|.+|+|||+||.++++.....-....++... . ...
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~-~---------~~~ 83 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA-S---------PLL 83 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH-H---------hHH
Confidence 3345666 444433 44555444 223456789999999999999999998653322233343311 1 000
Q ss_pred HHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH--HHHHHHhhccCCC-CCCC-EEEEEccccchhc----
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP--RQIELLIGRLDRF-ASGS-QVIITTRDKQVLT---- 332 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~-~~gs-~IiiTTR~~~v~~---- 332 (1866)
.+ .. ....-+||+||++.. ...+.+...+... ..|. .||+|++......
T Consensus 84 ~~----------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~ 140 (227)
T PRK08903 84 AF----------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLRE 140 (227)
T ss_pred HH----------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCH
Confidence 00 00 112347889999632 2323333332211 2344 4667766433221
Q ss_pred ----cCccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecc
Q 000202 333 ----NCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGC 391 (1866)
Q Consensus 333 ----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~ 391 (1866)
.+.....++++++++++-..++.+.+-... ..-.++....+++.+.|++..+..+-.
T Consensus 141 ~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~ 201 (227)
T PRK08903 141 DLRTRLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLD 201 (227)
T ss_pred HHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 111236789999999887777765432111 112245677777788888876554443
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00016 Score=91.78 Aligned_cols=178 Identities=15% Similarity=0.141 Sum_probs=105.7
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc---------------------ccceE
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH---------------------FEGSY 241 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~ 241 (1866)
....++||-+..++.|..++..+. -...+.++|..|+||||+|+.+++.+-.. |....
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 345679999999999999997543 24567899999999999999999855321 11111
Q ss_pred EEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCC
Q 000202 242 FACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGS 319 (1866)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs 319 (1866)
.+.... .....+ .++++..+... -..++.-++|+|+|+. .+..+.++..+....+.+
T Consensus 92 eidaas----~~~v~~-iR~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~ 150 (509)
T PRK14958 92 EVDAAS----RTKVED-TRELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHV 150 (509)
T ss_pred EEcccc----cCCHHH-HHHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCe
Confidence 111000 000111 11111111100 0134556889999984 567777877777666678
Q ss_pred EEEEEcccc-chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 320 QVIITTRDK-QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 320 ~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
++|++|.+. .+.... .....+++++++.++....+...+-.... .-..+....|++.++|-+-
T Consensus 151 ~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi--~~~~~al~~ia~~s~GslR 215 (509)
T PRK14958 151 KFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV--EFENAALDLLARAANGSVR 215 (509)
T ss_pred EEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHH
Confidence 777766544 222211 22456889999999877766554422211 1123446677888887663
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.5e-06 Score=100.44 Aligned_cols=144 Identities=17% Similarity=0.165 Sum_probs=99.3
Q ss_pred cccCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhh
Q 000202 1660 YMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMI 1739 (1866)
Q Consensus 1660 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l 1739 (1866)
.++-+..+++..|+.+++..... ....+..|+.|..++|....+.....+. ...++|+.|.+..|.++++.--...-
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~--i~~~c~~lq~l~~s~~t~~~d~~l~aLg-~~~~~L~~l~l~~c~~fsd~~ft~l~ 342 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWL--IACGCHALQVLCYSSCTDITDEVLWALG-QHCHNLQVLELSGCQQFSDRGFTMLG 342 (483)
T ss_pred cChHhhccchhhhccccchHHHH--HhhhhhHhhhhcccCCCCCchHHHHHHh-cCCCceEEEeccccchhhhhhhhhhh
Confidence 34556667777887776653211 2345678999999998876653222222 24699999999999998776433344
Q ss_pred hhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCcccccc-------ccCCCCCccEEEEEcCccccc
Q 000202 1740 QFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANI-------WRNDWPSLEYISFYGCPKLKK 1811 (1866)
Q Consensus 1740 ~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i-------~~~~lpsLe~L~I~~Cp~L~~ 1811 (1866)
.+.+.|+.+++..|.....- .. .+...++|+|+.|.|+.|...+.- .......|+.|.+.+||.++.
T Consensus 343 rn~~~Le~l~~e~~~~~~d~----tL-~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 343 RNCPHLERLDLEECGLITDG----TL-ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred cCChhhhhhcccccceehhh----hH-hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence 67899999999999655332 11 122347899999999999876544 112567899999999999873
|
|
| >PRK09376 rho transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=4.4e-05 Score=90.43 Aligned_cols=89 Identities=18% Similarity=0.180 Sum_probs=62.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCC--CHHHHHHHHHHHhccCCCCccCHH------HHHHHH
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYW--NTRKIQKQVLRQLSLHCKDRETDA------QVAEKL 1071 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~l 1071 (1866)
+..+|+|.+|+||||||+++|+..... +|+.++||.+++.. ++.++++.|...+-....+..... ...+..
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 458999999999999999998765555 89999999998887 888888888743322222222111 111222
Q ss_pred HHH-hCCCcEEEEEeCCCC
Q 000202 1072 WQV-LNGEKFLLLLDDVWE 1089 (1866)
Q Consensus 1072 ~~~-L~~kr~LlVlDdv~~ 1089 (1866)
... -.|++++|++|++..
T Consensus 249 e~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHcCCCEEEEEEChHH
Confidence 222 368999999999964
|
|
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00015 Score=82.22 Aligned_cols=160 Identities=14% Similarity=0.202 Sum_probs=100.2
Q ss_pred HHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHH
Q 000202 990 IFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAE 1069 (1866)
Q Consensus 990 i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 1069 (1866)
+.+.++..+.+.+.+||++|+||||||+.+.+...-.. ..||..|-...-..-.+.|.++...
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~------------- 215 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN------------- 215 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH-------------
Confidence 34455677888899999999999999999965443332 4566666543333334444433211
Q ss_pred HHHHHhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEE--ccCChhh---hccCCCCcEEEecCCChHHHHHHH
Q 000202 1070 KLWQVLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFM--ASRELDV---CRNMDVNMVVKLETLSMKDAWELF 1142 (1866)
Q Consensus 1070 ~l~~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~v---~~~~~~~~~~~l~~L~~~~a~~Lf 1142 (1866)
...+.++|..|.+|.|.. ..+-+.+ +|...+|+-++| ||.+.+. +.-..-..++-++.|..++...++
T Consensus 216 --~~~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL 290 (554)
T KOG2028|consen 216 --EKSLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTIL 290 (554)
T ss_pred --HHhhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHH
Confidence 134578899999999974 3444433 455667887776 6666543 111222378999999999999999
Q ss_pred HHHhc---CCC----CCch----HH-HHHHHHHHHcCCChH
Q 000202 1143 CKEVG---GII----QSPD----IH-LYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1143 ~~~~~---~~~----~~~~----~~-~~~~~I~~~c~GlPL 1171 (1866)
.+... ... .-|+ ++ .+..-++..|.|..-
T Consensus 291 ~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 291 MRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 87542 111 1122 22 255556777887653
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00015 Score=90.31 Aligned_cols=195 Identities=12% Similarity=0.120 Sum_probs=106.7
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc--ccceEEEEeeccccccccHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH--FEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
....+++|-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+... ++...|...... ....-...+
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~---~c~~c~~c~ 88 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE---PCGECESCR 88 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC---CCCCCHHHH
Confidence 345689999999999999887543 24557899999999999999999866431 110001100000 000000000
Q ss_pred HHHHHHhcc---ccccCccchh-HHHHHHHh-----hcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEc-ccc
Q 000202 261 ELLSKLLND---RNVKNFQNIS-VNFQSKRL-----ARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITT-RDK 328 (1866)
Q Consensus 261 ~ll~~~~~~---~~~~~~~~~~-~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTT-R~~ 328 (1866)
.+....... -+.......+ ...+.+.+ .+++-++|+|+++. .+.++.++..+....+.+.+|++| +..
T Consensus 89 ~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 89 DFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 000000000 0000000000 01111222 34556889999974 456777777776666677776655 333
Q ss_pred chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 329 QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 329 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.+.... ....++++++++.++..+.+...+-... ..-..+.+..+++.++|.+
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~l 222 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSM 222 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCH
Confidence 333221 1235789999999998887776552111 1122456788888888865
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0002 Score=91.80 Aligned_cols=177 Identities=14% Similarity=0.120 Sum_probs=105.8
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc---------------------cceE
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF---------------------EGSY 241 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~ 241 (1866)
....++||-+..++.+..++..+. -.+.+.++|..|+||||+|+.+++.+.... ...+
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 344679999999999999988543 245678999999999999999998653221 0111
Q ss_pred EEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCC
Q 000202 242 FACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGS 319 (1866)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs 319 (1866)
++... .... .+-.++++..... .-..+++-++|+|+++. .+..+.++..+......+
T Consensus 92 ei~~~----~~~~-vd~ir~l~~~~~~----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~ 150 (527)
T PRK14969 92 EVDAA----SNTQ-VDAMRELLDNAQY----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHV 150 (527)
T ss_pred Eeecc----ccCC-HHHHHHHHHHHhh----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCE
Confidence 11000 0000 0111111111100 00134567899999984 455777777776655677
Q ss_pred EEEEEccccc-hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 320 QVIITTRDKQ-VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 320 ~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.+|++|.+.+ +.... .....+++++++.++..+.+.+.+-.... ....+....|++.++|.+
T Consensus 151 ~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi--~~~~~al~~la~~s~Gsl 214 (527)
T PRK14969 151 KFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI--PFDATALQLLARAAAGSM 214 (527)
T ss_pred EEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 7776665443 32211 12467899999999988877765422211 122445677888888866
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.76 E-value=7.7e-05 Score=94.27 Aligned_cols=188 Identities=16% Similarity=0.119 Sum_probs=104.3
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKE 261 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1866)
|....+++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++.+...- |.. ...+.. ....+.
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~-~~~Cg~----C~sCr~ 81 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD-GDCCNS----CSVCES 81 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC-CCCCcc----cHHHHH
Confidence 3445689999999999999887543 346788999999999999999998653211 100 000000 000011
Q ss_pred HHHHHhccccccCcc---chhHHHHH---HH-----hhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcccc
Q 000202 262 LLSKLLNDRNVKNFQ---NISVNFQS---KR-----LARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDK 328 (1866)
Q Consensus 262 ll~~~~~~~~~~~~~---~~~~~~l~---~~-----L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~ 328 (1866)
+.... ..+..... ....+.++ +. ...++-++|+|+++. ......|+..+....+...+|++|...
T Consensus 82 i~~~~--h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~ 159 (605)
T PRK05896 82 INTNQ--SVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEF 159 (605)
T ss_pred HHcCC--CCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCCh
Confidence 10000 00000000 00011111 11 122344699999974 556677777666545566666655433
Q ss_pred -chhcc-CccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 329 -QVLTN-CEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 329 -~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.+... ......+++.+++.++....+...+-.... .-..+.+..+++.++|-+
T Consensus 160 ~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi--~Is~eal~~La~lS~Gdl 214 (605)
T PRK05896 160 QKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI--KIEDNAIDKIADLADGSL 214 (605)
T ss_pred HhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcH
Confidence 33222 122467899999999998888765532211 112345677888888754
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00029 Score=87.46 Aligned_cols=179 Identities=16% Similarity=0.136 Sum_probs=107.7
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc----cc-----------------ceE
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH----FE-----------------GSY 241 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~----f~-----------------~~~ 241 (1866)
.....+||.+..++.+.+.+..+. -.+.+.++|.+|+||||+|+.++..+... +. ...
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence 344678999999999999987543 34567899999999999999999865421 11 011
Q ss_pred EEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCC
Q 000202 242 FACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGS 319 (1866)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs 319 (1866)
++.... ... ..-.+++...+... -..+++-++|+|+++. ....+.++..+....+.+
T Consensus 90 ~~~~~~----~~~-~~~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~ 148 (355)
T TIGR02397 90 EIDAAS----NNG-VDDIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHV 148 (355)
T ss_pred Eeeccc----cCC-HHHHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccce
Confidence 111000 000 01111121111100 0223455889999874 355677777766555677
Q ss_pred EEEEEccccc-hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce
Q 000202 320 QVIITTRDKQ-VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 320 ~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
.+|++|.+.. +.... .....+++++++.++..+.+...+-..... -.++.+..+++.++|.|..
T Consensus 149 ~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~ 214 (355)
T TIGR02397 149 VFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRD 214 (355)
T ss_pred eEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHH
Confidence 7777775543 22211 224578899999999888887765322211 1245677888888887753
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=97.74 E-value=5.3e-05 Score=78.86 Aligned_cols=115 Identities=22% Similarity=0.286 Sum_probs=77.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccc---cccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHh
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVK---VMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVL 1075 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L 1075 (1866)
.+.+.|+|.+|+|||++++.+.+..... ..-..++|+.++...+...+.+.|+.+++.......+..++.+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4578999999999999999996532110 0024566999988889999999999999987666566777778888888
Q ss_pred CCCc-EEEEEeCCCCc---cchhhhcCCCCCCCCCcEEEEccCC
Q 000202 1076 NGEK-FLLLLDDVWEQ---IDLEAVGIPVPGSENGSKIFMASRE 1115 (1866)
Q Consensus 1076 ~~kr-~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~IivTTR~ 1115 (1866)
...+ .+||+|++..- ..++.+..... ..+.+||++.+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 6655 59999999753 22334433222 456667766553
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00024 Score=88.05 Aligned_cols=154 Identities=18% Similarity=0.291 Sum_probs=89.9
Q ss_pred CCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccc
Q 000202 185 SKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETG 253 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (1866)
..++.|++..++++.+.+.. +-...+-|.++|.+|+|||++|++++++....| +.....
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~-----i~v~~~----- 199 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRVVGS----- 199 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE-----EEeehH-----
Confidence 35789999999999887632 112355689999999999999999999765432 221111
Q ss_pred cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-------------HH---HHHHhhccCCC--
Q 000202 254 RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-------------RQ---IELLIGRLDRF-- 315 (1866)
Q Consensus 254 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~---~~~l~~~~~~~-- 315 (1866)
.+ .....+.. ...........-...+.+|+||+++.. +. +..++..+..+
T Consensus 200 ---~l----~~~~~g~~-----~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 200 ---EL----VQKFIGEG-----ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred ---HH----hHhhccch-----HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 11 11111100 000011111122346789999999752 11 22233222221
Q ss_pred CCCCEEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhcCC
Q 000202 316 ASGSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCAFR 360 (1866)
Q Consensus 316 ~~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~ 360 (1866)
..+..||.||.....+... ..+..++++..+.++..++|..+..+
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc
Confidence 2355677787654332211 12467899999999999999877643
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00022 Score=81.96 Aligned_cols=164 Identities=14% Similarity=0.178 Sum_probs=89.8
Q ss_pred CCce-eehh-hHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHH
Q 000202 186 KDLI-GVEW-RIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELL 263 (1866)
Q Consensus 186 ~~~v-Gr~~-~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 263 (1866)
++|+ |-.. .+..+.++.... ..+.+.|+|++|+|||+||.++++.....-..+.|+..... .....+
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~-------~~~~~~-- 90 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR-------AWFVPE-- 90 (235)
T ss_pred cccccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH-------hhhhHH--
Confidence 4455 6322 334444444322 34578999999999999999999976654334455542110 000000
Q ss_pred HHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH---HHHHH-HhhccCC-CCCC-CEEEEEccccc--------
Q 000202 264 SKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP---RQIEL-LIGRLDR-FASG-SQVIITTRDKQ-------- 329 (1866)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~~~-l~~~~~~-~~~g-s~IiiTTR~~~-------- 329 (1866)
+.+.+.+ --+|+|||+... .+|+. +...+.. ...| .++|+||+...
T Consensus 91 -------------------~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~ 150 (235)
T PRK08084 91 -------------------VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred -------------------HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccH
Confidence 1111211 237899999642 23321 2111111 1123 47999998552
Q ss_pred -hhccCccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 330 -VLTNCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 330 -v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
+...+....++++++++.++-.+.+.+++.... ..-.++...-|++.+.|.
T Consensus 151 ~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d 202 (235)
T PRK08084 151 DLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDRE 202 (235)
T ss_pred HHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCC
Confidence 222233346899999999999998887663211 112245566666666654
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00037 Score=91.06 Aligned_cols=199 Identities=15% Similarity=0.127 Sum_probs=111.6
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCccccccc---ceEEEEEecC---CCCHHHHHHHH--
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMF---HVIIWVTVSR---YWNTRKIQKQV-- 1050 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~---~~~~~~~~~~i-- 1050 (1866)
.+.|+...+..+...+.......+.|+|.+|+||||||+.+++.......+ ...-|+.+.. ..+...+...+
T Consensus 155 ~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg 234 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLG 234 (615)
T ss_pred hceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcC
Confidence 345666667777777765566679999999999999999997654332222 1223444321 12222221111
Q ss_pred -------------HHHhccCC----------------CCc-cCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcC
Q 000202 1051 -------------LRQLSLHC----------------KDR-ETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGI 1098 (1866)
Q Consensus 1051 -------------~~~l~~~~----------------~~~-~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~ 1098 (1866)
+...+... .+. .-....+..+.+.+++++++++.|+.|.. ..|+.+..
T Consensus 235 ~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~ 314 (615)
T TIGR02903 235 SVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKK 314 (615)
T ss_pred CccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhh
Confidence 11111000 000 01134567888899999999998777653 45888877
Q ss_pred CCCCCCCCcEEEE--ccCChhhhc-cCC-CCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHH
Q 000202 1099 PVPGSENGSKIFM--ASRELDVCR-NMD-VNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTI 1174 (1866)
Q Consensus 1099 ~l~~~~~gs~Iiv--TTR~~~v~~-~~~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~ 1174 (1866)
.+....+...|++ ||++..... ... -...+.+.+++.+|.+.++.+.+......- -.+..+.|.+.+..-+-|+.
T Consensus 315 ~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l-s~eal~~L~~ys~~gRraln 393 (615)
T TIGR02903 315 LFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL-AAGVEELIARYTIEGRKAVN 393 (615)
T ss_pred hcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHCCCcHHHHHH
Confidence 6665555555665 566543211 111 124678899999999999988765321110 12333444444443344554
Q ss_pred HHHH
Q 000202 1175 VTAK 1178 (1866)
Q Consensus 1175 ~~g~ 1178 (1866)
.++.
T Consensus 394 ~L~~ 397 (615)
T TIGR02903 394 ILAD 397 (615)
T ss_pred HHHH
Confidence 4443
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00064 Score=82.17 Aligned_cols=173 Identities=12% Similarity=0.141 Sum_probs=105.5
Q ss_pred cchhhHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcC----cccccccceEEEEEe-cCCCCHHHHHHHHHHH
Q 000202 980 VNYTQRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISY----PEVKVMFHVIIWVTV-SRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~----~~~~~~F~~~~wv~v-s~~~~~~~~~~~i~~~ 1053 (1866)
+.|.+.-++.+.+.+...+. ....++|+.|+||||+|+.++.. .....+.|...|... .....+.+ .+++.+.
T Consensus 6 i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~~ 84 (313)
T PRK05564 6 IIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIEE 84 (313)
T ss_pred ccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHHH
Confidence 44566667778888866554 45689999999999999998652 112334555444432 22233333 2223332
Q ss_pred hccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCC--CCccchhhhcCCCCCCCCCcEEEEccCChhhh-cc-CCCCcEEE
Q 000202 1054 LSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDV--WEQIDLEAVGIPVPGSENGSKIFMASRELDVC-RN-MDVNMVVK 1129 (1866)
Q Consensus 1054 l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv--~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~-~~-~~~~~~~~ 1129 (1866)
+... -..+++=++|+|++ .+...++.+...+.....++.+|++|.+.+.. .. ..-...++
T Consensus 85 ~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~ 148 (313)
T PRK05564 85 VNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYK 148 (313)
T ss_pred HhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeee
Confidence 2211 11234445555555 45667888888777666788988888765432 11 11136889
Q ss_pred ecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHH
Q 000202 1130 LETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTI 1174 (1866)
Q Consensus 1130 l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~ 1174 (1866)
+.+++.++....+.+...+.. .+.+..++..++|.|.-+.
T Consensus 149 ~~~~~~~~~~~~l~~~~~~~~-----~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 149 LNRLSKEEIEKFISYKYNDIK-----EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred CCCcCHHHHHHHHHHHhcCCC-----HHHHHHHHHHcCCCHHHHH
Confidence 999999999887766543211 2336678899999886543
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0004 Score=79.77 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=81.9
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
...+.|+|..|+|||.||.++++.+...-..++|+.. . ++... ...+.+.++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~---------~~~~~------------------~~~~~~~~~ 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-A---------ELLDR------------------GPELLDNLE 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-H---------HHHhh------------------hHHHHHhhh
Confidence 3578999999999999999999876554345566541 1 11110 011223333
Q ss_pred cCcEEEEEecCCC---HHHHH-HHhhccCC-CCCCCEEEEEccccchh---------ccCccceeeecCCCCHHHHHHHH
Q 000202 289 RKKVLIVFDDVNH---PRQIE-LLIGRLDR-FASGSQVIITTRDKQVL---------TNCEVDHIYQMKELVHADAHKLF 354 (1866)
Q Consensus 289 ~k~~LlVlDdv~~---~~~~~-~l~~~~~~-~~~gs~IiiTTR~~~v~---------~~~~~~~~~~l~~L~~~ea~~Lf 354 (1866)
+-. +||+||+.. ...|+ .+...+.. ...|.+||+||+...-. ..+....++++++++.++-.+.+
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 333 678899962 12332 23333221 23467899998754221 11122367889999999999998
Q ss_pred HhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 355 TQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
..++..... .-.++...-+++.+.|-
T Consensus 176 ~~ka~~~~~--~l~~ev~~~L~~~~~~d 201 (234)
T PRK05642 176 QLRASRRGL--HLTDEVGHFILTRGTRS 201 (234)
T ss_pred HHHHHHcCC--CCCHHHHHHHHHhcCCC
Confidence 865532211 11135555566655543
|
|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00024 Score=80.82 Aligned_cols=137 Identities=12% Similarity=0.091 Sum_probs=81.7
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
.+.+.|||.+|+|||+|++.++.... ..|+... .+..++... +.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~~----------~~~~~~~~~---------------------~~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHPN----------EIGSDAANA---------------------AA 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecHH----------HcchHHHHh---------------------hh
Confidence 45689999999999999999887532 2243310 011111110 11
Q ss_pred cCcEEEEEecCCC----HHHHHHHhhccCCCCCCCEEEEEcccc---------chhccCccceeeecCCCCHHHHHHHHH
Q 000202 289 RKKVLIVFDDVNH----PRQIELLIGRLDRFASGSQVIITTRDK---------QVLTNCEVDHIYQMKELVHADAHKLFT 355 (1866)
Q Consensus 289 ~k~~LlVlDdv~~----~~~~~~l~~~~~~~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~ 355 (1866)
+ -+|++||++. .+.+-.+...+. ..|..||+|++.. .+...+....++++++++.++-.+++.
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 1 2788899953 333333332222 3477899999742 233333445789999999999999998
Q ss_pred hhcCCCCCCChhHHHHHHHHHHHhCCCcceee
Q 000202 356 QCAFRGDHLDAGYTELAHKALKYAQGVPLALK 387 (1866)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 387 (1866)
+++-... ..-.++...-|++.+.|..-++.
T Consensus 164 ~~~~~~~--~~l~~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 164 KLFADRQ--LYVDPHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred HHHHHcC--CCCCHHHHHHHHHHhhhhHHHHH
Confidence 8773221 12224566677777766554443
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=97.68 E-value=6.7e-05 Score=85.91 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=60.9
Q ss_pred ceEEEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCC--CcHHHHHHHH-----HHHHHHH------------H
Q 000202 708 MVRILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKN--LDLSTVLNAI-----AVQFSEI------------R 768 (1866)
Q Consensus 708 ~l~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~--f~~~~~~~~i-----~~~~~~~------------~ 768 (1866)
+-+.+.|+|++|+|||||++.+|++.... +|+.++||+++.. +++.++.+.| ..++... .
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999988766 9999999998766 9999999998 2222110 0
Q ss_pred hhhhhhhccCeEEEEEEccCC
Q 000202 769 RAENMADLSERLLVVLDDVCD 789 (1866)
Q Consensus 769 ~~~~~~~~~~r~LlVlddv~~ 789 (1866)
........+++.++++|++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 011112337899999999843
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0002 Score=76.14 Aligned_cols=122 Identities=11% Similarity=0.033 Sum_probs=68.6
Q ss_pred hhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCc
Q 000202 982 YTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDR 1061 (1866)
Q Consensus 982 ~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 1061 (1866)
++++.+..+...+.....+.+.|+|.+|+||||+++.+++... ..-..++++..............+...
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~-------- 71 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF-------- 71 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh--------
Confidence 3556777777777665667899999999999999999965432 111345566554433222221111100
Q ss_pred cCHHHHHHHHHHHhCCCcEEEEEeCCCCc-----cchhhhcCCCCCC---CCCcEEEEccCChh
Q 000202 1062 ETDAQVAEKLWQVLNGEKFLLLLDDVWEQ-----IDLEAVGIPVPGS---ENGSKIFMASRELD 1117 (1866)
Q Consensus 1062 ~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-----~~~~~l~~~l~~~---~~gs~IivTTR~~~ 1117 (1866)
............+..+||+||++.. ..+..+....... ..+..||+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112233456789999999852 2222222222211 35678888887543
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00031 Score=87.96 Aligned_cols=161 Identities=20% Similarity=0.326 Sum_probs=90.1
Q ss_pred cCCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccc-----cceEEEEeec
Q 000202 184 ESKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF-----EGSYFACNVR 247 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~~~~~~~ 247 (1866)
...++.|.+..++++.+.+.. +-...+-+.++|++|+|||++|+++++.+...+ ....|+....
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 345677899999888876531 112355689999999999999999999775542 2233443111
Q ss_pred cccccccHHHHHHHHHHHHhccccccCccchhHHHHHHH-hhcCcEEEEEecCCCH---------H-----HHHHHhhcc
Q 000202 248 AAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKR-LARKKVLIVFDDVNHP---------R-----QIELLIGRL 312 (1866)
Q Consensus 248 ~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~---------~-----~~~~l~~~~ 312 (1866)
. +++....+... ...... ....++. ..+++++|+||+++.. . .+..++..+
T Consensus 260 ~------------eLl~kyvGete-~~ir~i-F~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 260 P------------ELLNKYVGETE-RQIRLI-FQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred h------------hhcccccchHH-HHHHHH-HHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 1 01111000000 000000 0111111 2347899999999742 1 123444444
Q ss_pred CCCC--CCCEEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhc
Q 000202 313 DRFA--SGSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 313 ~~~~--~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
.... .+..||.||.....+... ..+..++++..+.++..++|..+.
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3322 344455566544332211 225568999999999999998876
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >PRK09376 rho transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=4.8e-05 Score=90.10 Aligned_cols=79 Identities=14% Similarity=0.236 Sum_probs=59.4
Q ss_pred eEEEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCC--cHHHHHHHHHHHH-------------H----HHHh
Q 000202 709 VRILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNL--DLSTVLNAIAVQF-------------S----EIRR 769 (1866)
Q Consensus 709 l~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f--~~~~~~~~i~~~~-------------~----~~~~ 769 (1866)
-+=.-|+|++|+||||||+.||++...+ ||+.++||++++.+ ++.++.+.|...+ . ....
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 3566799999999999999999988777 99999999999988 8888888885221 0 0011
Q ss_pred hhhhhhccCeEEEEEEccC
Q 000202 770 AENMADLSERLLVVLDDVC 788 (1866)
Q Consensus 770 ~~~~~~~~~r~LlVlddv~ 788 (1866)
.......+++.+|++|++.
T Consensus 248 Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHcCCCEEEEEEChH
Confidence 1111234788999999994
|
|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00061 Score=84.58 Aligned_cols=178 Identities=17% Similarity=0.218 Sum_probs=103.6
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc--------ccceEEEEeecccccccc
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH--------FEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~ 254 (1866)
....+++|.+..++.+...+..+. -.+.+.++|.+|+||||+|+++++.+... |...++-. ... ....
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~~~-~~~~ 89 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--DAA-SNNS 89 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--ccc-cCCC
Confidence 345678999999999999997542 34578899999999999999998866431 21111110 000 0000
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcc-ccchh
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTR-DKQVL 331 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR-~~~v~ 331 (1866)
.+-..++...+... -..+++-++|+|+++. ...++.++..+......+.+|++|. ...+.
T Consensus 90 -~~~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 90 -VDDIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred -HHHHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 11111222211100 0123455799999974 4456667665554444566665553 33332
Q ss_pred ccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 332 TNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 332 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
... ....++++++++.++....+...+..... .-..+.+..+++.++|.+
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~--~i~~~al~~l~~~~~gdl 203 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI--KFEDDALHIIAQKADGAL 203 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCH
Confidence 221 22457899999999988888776533221 112456777777777643
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00056 Score=87.69 Aligned_cols=189 Identities=14% Similarity=0.128 Sum_probs=106.9
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....++||.+..++.|..++..+. -.+.+.++|..|+||||+|+.+++.+....... . .-.+. -.....+
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~-~pCg~-------C~~C~~i 79 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-A-TPCGV-------CESCVAL 79 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-C-Ccccc-------cHHHHHh
Confidence 345689999999999999998542 345678999999999999999998654321000 0 00000 0000000
Q ss_pred HHHHhccccccCc---c--chhH-HHHHHH-----hhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccc-c
Q 000202 263 LSKLLNDRNVKNF---Q--NISV-NFQSKR-----LARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRD-K 328 (1866)
Q Consensus 263 l~~~~~~~~~~~~---~--~~~~-~~l~~~-----L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~-~ 328 (1866)
...-....+...+ . ..+. ..+.+. ..+++-++|+|+++ +....+.|+..+........+|++|.+ .
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred hcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 0000000000000 0 0000 111111 13455688999997 566778888877766667776665543 3
Q ss_pred chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 329 QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 329 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.+.... .....|++.+++.++..+.+.+.+-.... .-..+....|++.++|-+
T Consensus 160 kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi--~i~~~al~~Ia~~s~Gdl 213 (584)
T PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV--VVDDAVYPLVIRAGGGSP 213 (584)
T ss_pred hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 333221 22578999999999988888765532221 112345667788887755
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0012 Score=80.33 Aligned_cols=191 Identities=16% Similarity=0.168 Sum_probs=113.5
Q ss_pred cCCCceeehhhHHHHHHhhhcC--CCCcEEEEEEecCCCchhHHHHHHHHhhhccccc--eEEEEeeccccccccHHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTG--SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEG--SYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~--~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~ 259 (1866)
.++.+.+|+.+++++...|..- +....-+.|+|.+|+|||+.++.+++++...... ++++... .......+.
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~----~~~t~~~i~ 90 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCL----ELRTPYQVL 90 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeee----eCCCHHHHH
Confidence 3455999999999999888632 1122238899999999999999999987776443 3555422 223445677
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHh--hcCcEEEEEecCCCH-----HHHHHHhhccCCCCCCCEEEE--Eccccch
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRL--ARKKVLIVFDDVNHP-----RQIELLIGRLDRFASGSQVII--TTRDKQV 330 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~Iii--TTR~~~v 330 (1866)
.+++.++................+.+.+ +++.+++|||+++.. +.+-.|....... .++|+| ++-+...
T Consensus 91 ~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~ 168 (366)
T COG1474 91 SKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKF 168 (366)
T ss_pred HHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHH
Confidence 7777776533221111111224455555 357899999999742 2233333322222 455443 3433332
Q ss_pred hc--------cCccceeeecCCCCHHHHHHHHHhhc---CCCCCCChhHHHHHHHHHHHhCC
Q 000202 331 LT--------NCEVDHIYQMKELVHADAHKLFTQCA---FRGDHLDAGYTELAHKALKYAQG 381 (1866)
Q Consensus 331 ~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~G 381 (1866)
.. ..+.. .+..++-+.+|-.+.+..++ |......++.-+++..++..-+|
T Consensus 169 ~~~ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G 229 (366)
T COG1474 169 LDYLDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG 229 (366)
T ss_pred HHHhhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc
Confidence 22 22222 26688888888888887654 45555555555666666666665
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00073 Score=90.09 Aligned_cols=185 Identities=14% Similarity=0.146 Sum_probs=106.9
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcccc--c-eEEEEeeccccccccHHHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFE--G-SYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~--~-~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
...++||.+..++.|...+..+. -.+.+.++|..|+||||+|+.+++.+..... . .|=.+ .-..
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C------------~sC~ 79 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC------------DSCV 79 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc------------HHHH
Confidence 34679999999999999998543 3456789999999999999999986642110 0 00000 0000
Q ss_pred HHHHHHhccccccCc---cchhH---HHHHHH-----hhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccc
Q 000202 261 ELLSKLLNDRNVKNF---QNISV---NFQSKR-----LARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRD 327 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~---~~~~~---~~l~~~-----L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~ 327 (1866)
.+...-....+...+ ..... ..+++. ..+++-++|||+++ +.+..+.|+..+......+.+|++|.+
T Consensus 80 ~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~ 159 (824)
T PRK07764 80 ALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE 159 (824)
T ss_pred HHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 000000000000000 00000 111111 23455678899998 456677777777766677777766643
Q ss_pred -cchhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 328 -KQVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 328 -~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
..+.... ....+|++..++.++..+.+.+..-.... ....+....|++.++|.+
T Consensus 160 ~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv--~id~eal~lLa~~sgGdl 215 (824)
T PRK07764 160 PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV--PVEPGVLPLVIRAGGGSV 215 (824)
T ss_pred hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 3344322 23578999999999988888765422111 112345677888888876
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00068 Score=76.89 Aligned_cols=174 Identities=17% Similarity=0.276 Sum_probs=90.4
Q ss_pred CCc-eeehhhH--HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccc--eEEEEeeccccccccHHHHHH
Q 000202 186 KDL-IGVEWRI--KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEG--SYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 186 ~~~-vGr~~~l--~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
++| +|-..+. ................+.|+|..|+|||.|..++++++....+. ++|+. . ..+..
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-~---------~~f~~ 77 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-A---------EEFIR 77 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-H---------HHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-H---------HHHHH
Confidence 345 4643432 22333333333335578999999999999999999987765443 34443 1 12333
Q ss_pred HHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC---HHHH-HHHhhccCC-CCCCCEEEEEccccch-hc--
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH---PRQI-ELLIGRLDR-FASGSQVIITTRDKQV-LT-- 332 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~---~~~~-~~l~~~~~~-~~~gs~IiiTTR~~~v-~~-- 332 (1866)
.+...+... ....++..++. -=+|+|||++. ...| +.+...+.. ...|.+||+|++...- +.
T Consensus 78 ~~~~~~~~~---------~~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~ 147 (219)
T PF00308_consen 78 EFADALRDG---------EIEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGL 147 (219)
T ss_dssp HHHHHHHTT---------SHHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS
T ss_pred HHHHHHHcc---------cchhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccccc
Confidence 333322221 11234455553 34678999974 2222 222222211 1347799999965421 11
Q ss_pred ------cCccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCC
Q 000202 333 ------NCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQG 381 (1866)
Q Consensus 333 ------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G 381 (1866)
.....-++++++++.++-.+++.+.+-...- .-.++.+.-+++.+.+
T Consensus 148 ~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~--~l~~~v~~~l~~~~~~ 200 (219)
T PF00308_consen 148 LPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI--ELPEEVIEYLARRFRR 200 (219)
T ss_dssp -HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTS
T ss_pred ChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC--CCcHHHHHHHHHhhcC
Confidence 1223457899999999999999887742221 1224455555555443
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0006 Score=87.92 Aligned_cols=190 Identities=14% Similarity=0.150 Sum_probs=109.3
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccce---EEEEeeccccccccHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGS---YFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~---~~~~~~~~~~~~~~~~~l~ 259 (1866)
....++||.+..++.|...+..+. -...+.++|..|+||||+|+.+++.+....... .-+...+. ..-.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~-------c~~C 92 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV-------GEHC 92 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc-------cHHH
Confidence 345689999999999999988543 345688999999999999999999664332100 00000000 0000
Q ss_pred HHHHHHHhccccccCc---cchhHHHHHH---Hh-----hcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEc-
Q 000202 260 KELLSKLLNDRNVKNF---QNISVNFQSK---RL-----ARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITT- 325 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~---~~~~~~~l~~---~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTT- 325 (1866)
..+.... ..+.... .....+.+++ .+ ..++-++|+|+++. ....+.|+..+....+.+.+|++|
T Consensus 93 ~~i~~g~--h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tt 170 (598)
T PRK09111 93 QAIMEGR--HVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170 (598)
T ss_pred HHHhcCC--CCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 1111000 0000000 0001111221 11 23455789999974 456777777776666677776655
Q ss_pred cccchhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 326 RDKQVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 326 R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
..+.+.... .....+++..++.++....+.+.+-.... .-..+....|++.++|.+.
T Consensus 171 e~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi--~i~~eAl~lIa~~a~Gdlr 228 (598)
T PRK09111 171 EIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV--EVEDEALALIARAAEGSVR 228 (598)
T ss_pred ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 434443222 23468899999999998888876532221 1223567788888888664
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.002 Score=82.63 Aligned_cols=181 Identities=15% Similarity=0.150 Sum_probs=102.5
Q ss_pred ccccchhhHHHHHHHHHhcc----CCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHH
Q 000202 977 VTAVNYTQRNVRKIFRYVND----VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLR 1052 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 1052 (1866)
+..+.|.++.++.+..|+.. ...+.+.|+|++|+||||+|+.+++... |+. +-++.+...+.. ..+.++.
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~~-ielnasd~r~~~-~i~~~i~ 86 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WEV-IELNASDQRTAD-VIERVAG 86 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCE-EEEcccccccHH-HHHHHHH
Confidence 34566777777777777632 2256789999999999999999966431 222 223444322222 2222222
Q ss_pred HhccCCCCccCHHHHHHHHHHHhC-CCcEEEEEeCCCCcc------chhhhcCCCCCCCCCcEEEEccCChh-hhc-cC-
Q 000202 1053 QLSLHCKDRETDAQVAEKLWQVLN-GEKFLLLLDDVWEQI------DLEAVGIPVPGSENGSKIFMASRELD-VCR-NM- 1122 (1866)
Q Consensus 1053 ~l~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~------~~~~l~~~l~~~~~gs~IivTTR~~~-v~~-~~- 1122 (1866)
..... ..+. .++-+||+|+++... .+..+...+.. .+..||+|+.+.. ... ..
T Consensus 87 ~~~~~---------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 87 EAATS---------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred Hhhcc---------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHh
Confidence 22110 0112 367899999998632 13444333321 2344666664432 111 11
Q ss_pred CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 000202 1123 DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALA 1181 (1866)
Q Consensus 1123 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~ 1181 (1866)
.....+.+.+++..+....+.+.+......- -.+....|++.++|..-.+......+.
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i-~~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIEC-DDEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 1235789999999998888877664322111 134577899999998766654444443
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00039 Score=84.56 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=87.5
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKE 261 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1866)
|....+++|.+...+.+..++..+. -..++.++|.+|+||||+|+++++.....| .++. .. . ... ...+.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~~---~-~~~-~~i~~ 86 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-GS---D-CRI-DFVRN 86 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-cC---c-ccH-HHHHH
Confidence 4456789999999999999987532 356778899999999999999998763322 1221 11 1 111 11111
Q ss_pred HHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH---HHHHHHhhccCCCCCCCEEEEEccccchhc-cC-cc
Q 000202 262 LLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP---RQIELLIGRLDRFASGSQVIITTRDKQVLT-NC-EV 336 (1866)
Q Consensus 262 ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~-~~-~~ 336 (1866)
.+....... .+...+-+||+|+++.. +..+.+...+.....++++|+||.....+. .. ..
T Consensus 87 ~l~~~~~~~---------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 87 RLTRFASTV---------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HHHHHHHhh---------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 111110000 01234557899999743 333444443444556789999987543211 11 12
Q ss_pred ceeeecCCCCHHHHHHHHHh
Q 000202 337 DHIYQMKELVHADAHKLFTQ 356 (1866)
Q Consensus 337 ~~~~~l~~L~~~ea~~Lf~~ 356 (1866)
...+.++..+.++..+++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 24567777778777766543
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00061 Score=85.63 Aligned_cols=161 Identities=15% Similarity=0.223 Sum_probs=91.9
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccc--eEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHH
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEG--SYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKR 286 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~ 286 (1866)
...+.|+|..|+|||+|+.++++.+....+. ++|+. ...+...+...+.... ...+..++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~~-------~~~~~~~~~ 203 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKTH-------KEIEQFKNE 203 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHhh-------hHHHHHHHH
Confidence 4568999999999999999999976543322 23332 1233344433332210 011223333
Q ss_pred hhcCcEEEEEecCCC----HHHHHHHhhccCC-CCCCCEEEEEccccc---------hhccCccceeeecCCCCHHHHHH
Q 000202 287 LARKKVLIVFDDVNH----PRQIELLIGRLDR-FASGSQVIITTRDKQ---------VLTNCEVDHIYQMKELVHADAHK 352 (1866)
Q Consensus 287 L~~k~~LlVlDdv~~----~~~~~~l~~~~~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~ 352 (1866)
++ ..-+|||||+.. ....+.+...+.. ...|..||+|+.... +...+...-++++++++.++-.+
T Consensus 204 ~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 204 IC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred hc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 34 344788999963 2222333332221 134567888876431 12222334567899999999999
Q ss_pred HHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceee
Q 000202 353 LFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALK 387 (1866)
Q Consensus 353 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 387 (1866)
++.+++-.......-.++...-|++.++|.|-.+.
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~ 317 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIK 317 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHH
Confidence 99887732111012335667778888888775444
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00069 Score=87.47 Aligned_cols=193 Identities=12% Similarity=0.123 Sum_probs=105.1
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc--ccceEEEEeeccccccccHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH--FEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
....++||-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+-.. ++...|.....+ ....-...+
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~---~Cg~C~sC~ 88 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE---PCGECESCR 88 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC---CCccCHHHH
Confidence 345689999999999999887542 34568899999999999999999865331 110111110000 000000000
Q ss_pred HHHHHHhcccccc-----Cccchh-HHHHHHH-----hhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcc-
Q 000202 261 ELLSKLLNDRNVK-----NFQNIS-VNFQSKR-----LARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTR- 326 (1866)
Q Consensus 261 ~ll~~~~~~~~~~-----~~~~~~-~~~l~~~-----L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR- 326 (1866)
.+... ...+.. .....+ ...+.+. ..+++-++|+|+++. ....+.|+..+....+.+.+|++|.
T Consensus 89 ~~~~g--~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 89 DFDAG--TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred HHhcc--CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 00000 000000 000000 0111111 233455789999974 4557777777766556666665553
Q ss_pred ccchhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 327 DKQVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 327 ~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
...+.... ....++++.+++.++....+.+.+-.... .-..+.+..+++.++|..
T Consensus 167 ~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdl 222 (620)
T PRK14954 167 LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSM 222 (620)
T ss_pred hhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCH
Confidence 33333221 23578999999999988777765422111 112455777888888743
|
|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00069 Score=77.10 Aligned_cols=138 Identities=14% Similarity=0.048 Sum_probs=82.3
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+.+.|||..|+|||+|++.++.... ..+++.. .+...+...+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHhh---------------------hc-
Confidence 45689999999999999999865321 1133321 1222221111 11
Q ss_pred cEEEEEeCCCCc----cchhhhcCCCCCCCCCcEEEEccCC---------hhhhccCCCCcEEEecCCChHHHHHHHHHH
Q 000202 1079 KFLLLLDDVWEQ----IDLEAVGIPVPGSENGSKIFMASRE---------LDVCRNMDVNMVVKLETLSMKDAWELFCKE 1145 (1866)
Q Consensus 1079 r~LlVlDdv~~~----~~~~~l~~~l~~~~~gs~IivTTR~---------~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 1145 (1866)
-+|++||+... +.+-.+...+. ..|..||+|++. +++...+....++++++++.++-.+++.++
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 27888999642 22222221111 246678888873 333444555679999999999999999988
Q ss_pred hcCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 000202 1146 VGGIIQSPDIHLYARAIVKGCCGLPLLTIV 1175 (1866)
Q Consensus 1146 ~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~ 1175 (1866)
+....- .--+++..-|++.+.|..-++..
T Consensus 166 ~~~~~~-~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 166 FADRQL-YVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHcCC-CCCHHHHHHHHHHhhhhHHHHHH
Confidence 754211 11234556677777776665554
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00058 Score=80.17 Aligned_cols=151 Identities=13% Similarity=0.155 Sum_probs=80.8
Q ss_pred CceeehhhHHHHHHhhh----------c---CCCCcEEEEEEecCCCchhHHHHHHHHhhhcc--ccceEEEEeeccccc
Q 000202 187 DLIGVEWRIKEIESLLR----------T---GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH--FEGSYFACNVRAAEE 251 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~----------~---~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~ 251 (1866)
.++|.+...++|.+... . ..+....+.++|.+|+||||+|+.+++.+... .....++.....
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 46777666655543321 0 12235568899999999999999999865321 111222221111
Q ss_pred cccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC----------HHHHHHHhhccCCCCCCCEE
Q 000202 252 TGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH----------PRQIELLIGRLDRFASGSQV 321 (1866)
Q Consensus 252 ~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~----------~~~~~~l~~~~~~~~~gs~I 321 (1866)
+ +.....+.. .......+.+ ...-+|++|+++. .+.++.+...+........+
T Consensus 84 -----~----l~~~~~g~~-----~~~~~~~~~~---a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~v 146 (261)
T TIGR02881 84 -----D----LVGEYIGHT-----AQKTREVIKK---ALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVL 146 (261)
T ss_pred -----H----hhhhhccch-----HHHHHHHHHh---ccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEE
Confidence 1 111111110 0000111211 1234889999974 34566666665544444455
Q ss_pred EEEccccch----------hccCccceeeecCCCCHHHHHHHHHhhcC
Q 000202 322 IITTRDKQV----------LTNCEVDHIYQMKELVHADAHKLFTQCAF 359 (1866)
Q Consensus 322 iiTTR~~~v----------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 359 (1866)
|+++..... ... ....+++++++.+|-.+++.+.+-
T Consensus 147 ila~~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSR--FPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred EecCCcchhHHHHhcChHHHhc--cceEEEECCCCHHHHHHHHHHHHH
Confidence 666543322 111 134688999999999999887663
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00012 Score=87.77 Aligned_cols=112 Identities=21% Similarity=0.326 Sum_probs=75.1
Q ss_pred cccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCC-CCCCCChhhcCCCCCcEE
Q 000202 1372 EEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKT-RIKSLPETLVNLKCLQIL 1450 (1866)
Q Consensus 1372 ~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~-~i~~lp~~i~~L~~L~~L 1450 (1866)
..+.+++.|+++++.+..+|.+. .+|+.|.+++|..+..+|..+ ..+|++|++++| .+..+|.+ |+.|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------cceE
Confidence 34678899999999999988433 469999999988888888755 368999999999 78888865 5556
Q ss_pred eccccc--CcccCCccccCCCCCcEEEccCCC-C--CcCChhhcCC-Cccceecccccc
Q 000202 1451 ILRDCD--FLFVLPPEVGSLECLEVLDLRGTE-I--KMLPKEIGKL-TSLRYLTVFFFG 1503 (1866)
Q Consensus 1451 ~L~~~~--~~~~lP~~i~~L~~L~~L~l~~~~-i--~~lp~~i~~L-~~L~~L~l~~~~ 1503 (1866)
+++++. .+..+|.++ +.|.+.+++ . ..+|. .| ++|++|.+.+|.
T Consensus 118 ~L~~n~~~~L~~LPssL------k~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 118 EIKGSATDSIKNVPNGL------TSLSINSYNPENQARIDN---LISPSLKTLSLTGCS 167 (426)
T ss_pred EeCCCCCcccccCcchH------hheecccccccccccccc---ccCCcccEEEecCCC
Confidence 665433 356667654 445543321 1 11111 12 467777776654
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.001 Score=83.64 Aligned_cols=179 Identities=13% Similarity=0.117 Sum_probs=104.9
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc---c-ceE----------------E
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF---E-GSY----------------F 242 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f---~-~~~----------------~ 242 (1866)
....+++|.+..++.+...+..+. -.+.+.++|..|+||||+|+.+++.+...= + ..| |
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce
Confidence 345689999999999999997542 245678999999999999999998653210 0 000 1
Q ss_pred EEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCE
Q 000202 243 ACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQ 320 (1866)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ 320 (1866)
+...+. ...... -.+++...+ -..-...++-++|+|+++. .+..+.|+..+........
T Consensus 93 ~~i~g~--~~~gid-~ir~i~~~l----------------~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~ 153 (451)
T PRK06305 93 LEIDGA--SHRGIE-DIRQINETV----------------LFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVK 153 (451)
T ss_pred EEeecc--ccCCHH-HHHHHHHHH----------------HhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCce
Confidence 100000 000000 000111000 0001135567889999974 4456667766665555677
Q ss_pred EEEEccc-cchhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 321 VIITTRD-KQVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 321 IiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
+|++|.+ ..+.... .....+++++++.++..+.+...+-... ..-..+.+..+++.++|.+
T Consensus 154 ~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg--~~i~~~al~~L~~~s~gdl 216 (451)
T PRK06305 154 FFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG--IETSREALLPIARAAQGSL 216 (451)
T ss_pred EEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCH
Confidence 7766643 3333221 2346789999999998888876552211 1123456778888888754
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0025 Score=81.61 Aligned_cols=193 Identities=10% Similarity=0.056 Sum_probs=105.6
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHh
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQL 1054 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 1054 (1866)
.+.+++|.+..++.+.+++...+.. .+.++|..|+||||+|+.+.+.-.-...++ +.++..-...+.|...-
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~~G~ 86 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREIDEGR 86 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHhcCC
Confidence 3445677778888888888766544 557999999999999998754211111100 00111111111111100
Q ss_pred -----ccCCCCccCHHHHHHHHHH----HhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCChhh-hccC
Q 000202 1055 -----SLHCKDRETDAQVAEKLWQ----VLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRELDV-CRNM 1122 (1866)
Q Consensus 1055 -----~~~~~~~~~~~~~~~~l~~----~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~v-~~~~ 1122 (1866)
..+.......+++.+.+.. -..++.-++|||++... ..++.+...+.......++|+||++.+- ....
T Consensus 87 h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TI 166 (830)
T PRK07003 87 FVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTV 166 (830)
T ss_pred CceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchh
Confidence 0000001111222111111 12345568889999864 4477666655444456777777776543 2111
Q ss_pred -CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh-HHHHHH
Q 000202 1123 -DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLP-LLTIVT 1176 (1866)
Q Consensus 1123 -~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP-LAi~~~ 1176 (1866)
.-...++++.++.++..+.+.+.+...... --.+..+.|++.++|.. -|+..+
T Consensus 167 rSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~-id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 167 LSRCLQFNLKQMPAGHIVSHLERILGEERIA-FEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred hhheEEEecCCcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 113689999999999999988776432211 12345667889998865 354443
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00075 Score=87.32 Aligned_cols=184 Identities=11% Similarity=0.146 Sum_probs=105.0
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....++||-+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-..-....+- . ..... ..
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~----p------C~~C~-~~ 82 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLE----P------CQECI-EN 82 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCC----c------hhHHH-Hh
Confidence 345679999999999999998543 355678999999999999999998653211000000 0 00000 00
Q ss_pred HHHHhccccccCc---c--chh-HHHHHHH-----hhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEcc-cc
Q 000202 263 LSKLLNDRNVKNF---Q--NIS-VNFQSKR-----LARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTR-DK 328 (1866)
Q Consensus 263 l~~~~~~~~~~~~---~--~~~-~~~l~~~-----L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR-~~ 328 (1866)
.....+.... . ... ...+.+. ..+++-++|+|+++ +...+.+|+..+........+|++|. ..
T Consensus 83 ---~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~ 159 (725)
T PRK07133 83 ---VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVH 159 (725)
T ss_pred ---hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChh
Confidence 0000000000 0 000 1111111 23566688999997 45667778777666555666565554 33
Q ss_pred chhcc-CccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 329 QVLTN-CEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 329 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.+... ......+++.+++.++..+.+...+-... .....+.+..+++.++|-+
T Consensus 160 KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg--I~id~eAl~~LA~lS~Gsl 213 (725)
T PRK07133 160 KIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN--ISYEKNALKLIAKLSSGSL 213 (725)
T ss_pred hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCH
Confidence 44322 12346899999999998888876542211 1112345677888888754
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0012 Score=84.53 Aligned_cols=166 Identities=11% Similarity=0.159 Sum_probs=99.8
Q ss_pred cchhhHHHHHHHHHhc-----cCCccEEEEEcCCCchHHHHHHHHhcCccc---ccccc--eEEEEEecCCCCHHHHHHH
Q 000202 980 VNYTQRNVRKIFRYVN-----DVTASKIGVYGVGGIGKTAALKALISYPEV---KVMFH--VIIWVTVSRYWNTRKIQKQ 1049 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~~~~~ 1049 (1866)
+.+|++++++|...|. .....++-|+|++|.|||+.++.|.+.-.. +.... .+++|.+..-.+...+...
T Consensus 757 LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqv 836 (1164)
T PTZ00112 757 LPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQV 836 (1164)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHH
Confidence 4578888888887772 222356789999999999999999643211 11222 2467777776788889999
Q ss_pred HHHHhccCCCC-ccCHHHHHHHHHHHhC---CCcEEEEEeCCCCcc-----chhhhcCCCCCCCCCcEEEE--ccCChh-
Q 000202 1050 VLRQLSLHCKD-RETDAQVAEKLWQVLN---GEKFLLLLDDVWEQI-----DLEAVGIPVPGSENGSKIFM--ASRELD- 1117 (1866)
Q Consensus 1050 i~~~l~~~~~~-~~~~~~~~~~l~~~L~---~kr~LlVlDdv~~~~-----~~~~l~~~l~~~~~gs~Iiv--TTR~~~- 1117 (1866)
|++++...... .....+....+...+. +...+||||+|+... .+-.+... +. ..+++|+| +|....
T Consensus 837 I~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~~-~s~SKLiLIGISNdlDL 914 (1164)
T PTZ00112 837 LYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-PT-KINSKLVLIAISNTMDL 914 (1164)
T ss_pred HHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-hh-ccCCeEEEEEecCchhc
Confidence 99998543322 2223344555555542 234689999997521 12112111 11 23555544 333222
Q ss_pred -------hhccCCCCcEEEecCCChHHHHHHHHHHhcC
Q 000202 1118 -------VCRNMDVNMVVKLETLSMKDAWELFCKEVGG 1148 (1866)
Q Consensus 1118 -------v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~ 1148 (1866)
+...++. ..+..++++.++-.+++..++..
T Consensus 915 perLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 915 PERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred chhhhhhhhhcccc-ccccCCCCCHHHHHHHHHHHHHh
Confidence 2222222 23566999999999999988753
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00011 Score=88.12 Aligned_cols=32 Identities=28% Similarity=0.192 Sum_probs=19.2
Q ss_pred CCcCEEeccCCccccccccCCCCCccEEEEEcC
Q 000202 1774 PSLKKLRLHHLPELANIWRNDWPSLEYISFYGC 1806 (1866)
Q Consensus 1774 p~L~~L~L~~c~~L~~i~~~~lpsLe~L~I~~C 1806 (1866)
++|+.|.+++|..+. ++...-.+|+.|++..|
T Consensus 156 sSLk~L~Is~c~~i~-LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPEKLPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-CcccccccCcEEEeccc
Confidence 467777777777543 22223357777777654
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00075 Score=86.02 Aligned_cols=187 Identities=12% Similarity=0.101 Sum_probs=104.8
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....++||-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+-...... ...+.. -...+.+
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-----~~pCg~----C~sC~~i 82 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-----GEPCNT----CEQCRKV 82 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCC-----CCCCcc----cHHHHHH
Confidence 344678999988888998887542 245688999999999999999998654211000 000000 0000011
Q ss_pred HHHHhccccccCcc---chhH---HHHHHH-----hhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcccc-
Q 000202 263 LSKLLNDRNVKNFQ---NISV---NFQSKR-----LARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDK- 328 (1866)
Q Consensus 263 l~~~~~~~~~~~~~---~~~~---~~l~~~-----L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~- 328 (1866)
... ...+...+. .... ..+.+. ..+++-++|||+++. .+..+.|+..+........+|++|.+.
T Consensus 83 ~~g--~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~ 160 (624)
T PRK14959 83 TQG--MHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160 (624)
T ss_pred hcC--CCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChh
Confidence 000 000000000 0000 111111 235667899999974 456677777765544566666666553
Q ss_pred chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 329 QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 329 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.+.... .....+++++++.++..+.+...+..... .-..+.+..|++.++|.+
T Consensus 161 kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~Gdl 214 (624)
T PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSV 214 (624)
T ss_pred hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 333221 22457899999999998888775533221 122455777888887743
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00089 Score=87.35 Aligned_cols=183 Identities=11% Similarity=0.097 Sum_probs=105.4
Q ss_pred cccccchhhHHHHHHHHHhccCCccE-EEEEcCCCchHHHHHHHHhcCcccccc-------------------cceEEEE
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTASK-IGVYGVGGIGKTAALKALISYPEVKVM-------------------FHVIIWV 1035 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~v-i~I~G~gGvGKTtLa~~v~~~~~~~~~-------------------F~~~~wv 1035 (1866)
.+..++|.+.-++.+.+++...+..- +.++|..|+||||+|+.+++.-.-... |..++++
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 34456777777777888887666654 579999999999999999643211100 1111222
Q ss_pred EecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEcc
Q 000202 1036 TVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMAS 1113 (1866)
Q Consensus 1036 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTT 1113 (1866)
.......+.. .+.|...+. .....+++-++|||++.. ....+.+...+.......++|++|
T Consensus 94 dAas~~kVDd-IReLie~v~----------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaT 156 (944)
T PRK14949 94 DAASRTKVDD-TRELLDNVQ----------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLAT 156 (944)
T ss_pred ccccccCHHH-HHHHHHHHH----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEEC
Confidence 1111111111 122221110 112246778999999985 355666655554333455666555
Q ss_pred CC-hhhhcc-CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000202 1114 RE-LDVCRN-MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1114 R~-~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
.+ ..+... ..-...|++++|+.++..+.+.+.+..... .--.+....|++.++|.|--+..+
T Consensus 157 Te~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI-~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 157 TDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL-PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 44 444322 111368999999999999888876643211 112345677999999988644433
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=9.2e-06 Score=99.32 Aligned_cols=107 Identities=27% Similarity=0.281 Sum_probs=76.4
Q ss_pred hcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCc-cccCCCCCcEEEccCCCCCcCChhhcCCCcccee
Q 000202 1419 ELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPP-EVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL 1497 (1866)
Q Consensus 1419 ~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~-~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L 1497 (1866)
..+++|+.|||++|++.+.- .+..|++|++|||++|. +..+|. +...+ .|+.|++++|.++++ .+|.+|.+|+.|
T Consensus 184 qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~LksL~~L 259 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKSLYGL 259 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeecccHHHhh-hhHHhhhhhhcc
Confidence 56788899999999888765 78888899999999887 556664 22233 388999999988877 478899999999
Q ss_pred ccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCC
Q 000202 1498 TVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPG 1539 (1866)
Q Consensus 1498 ~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~ 1539 (1866)
++++.--. +... ...+..|..|..|.+.+++.
T Consensus 260 DlsyNll~---~hse-------L~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 260 DLSYNLLS---EHSE-------LEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred chhHhhhh---cchh-------hhHHHHHHHHHHHhhcCCcc
Confidence 88762110 0111 12256677788888887664
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00084 Score=84.39 Aligned_cols=152 Identities=15% Similarity=0.206 Sum_probs=84.2
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccc--eEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHH
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEG--SYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKR 286 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~ 286 (1866)
...+.|+|.+|+|||+||.++++.+...++. ++|+. . .++..++...+... .....++.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~---------~~f~~~~~~~~~~~---------~~~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S---------EKFLNDLVDSMKEG---------KLNEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHHHHHhcc---------cHHHHHHH
Confidence 4569999999999999999999987765533 33432 1 12333333333211 11223334
Q ss_pred hhcCcEEEEEecCCCH---HHH-HHHhhccCC-CCCCCEEEEEcc-ccchh--------ccCccceeeecCCCCHHHHHH
Q 000202 287 LARKKVLIVFDDVNHP---RQI-ELLIGRLDR-FASGSQVIITTR-DKQVL--------TNCEVDHIYQMKELVHADAHK 352 (1866)
Q Consensus 287 L~~k~~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~IiiTTR-~~~v~--------~~~~~~~~~~l~~L~~~ea~~ 352 (1866)
.+...-+||+||++.. ... +.+...+.. ...|..||+||. .+.-+ ..+....++++++.+.+.-..
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 4445568999999732 111 222222111 123557888885 32211 122234577899999998888
Q ss_pred HHHhhcCCCCCCChhHHHHHHHHHHHhCC
Q 000202 353 LFTQCAFRGDHLDAGYTELAHKALKYAQG 381 (1866)
Q Consensus 353 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G 381 (1866)
++.+.+-.... .-.++....|++.+.|
T Consensus 271 IL~~~~~~~~~--~l~~ev~~~Ia~~~~~ 297 (440)
T PRK14088 271 IARKMLEIEHG--ELPEEVLNFVAENVDD 297 (440)
T ss_pred HHHHHHHhcCC--CCCHHHHHHHHhcccc
Confidence 88877632111 1123455556665544
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00033 Score=92.22 Aligned_cols=168 Identities=16% Similarity=0.198 Sum_probs=93.0
Q ss_pred ccccchhhHHH---HHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHH
Q 000202 977 VTAVNYTQRNV---RKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 977 ~~~~~~~~~~~---~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 1053 (1866)
+.++.|.+..+ ..+.+.+...+...+.++|++|+||||||+.+++. ....|. .++.+. ..+.+
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~d-------- 92 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVKD-------- 92 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhHH--------
Confidence 34456665544 24555566666677889999999999999999653 223331 111110 01111
Q ss_pred hccCCCCccCHHHHHHHHHHHh--CCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEc--cCChh--hhcc-CCC
Q 000202 1054 LSLHCKDRETDAQVAEKLWQVL--NGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMA--SRELD--VCRN-MDV 1124 (1866)
Q Consensus 1054 l~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivT--TR~~~--v~~~-~~~ 1124 (1866)
..+......+.+ .+++.+|||||++. ..+++.+...+ ..|+.++++ |.+.. +... ..-
T Consensus 93 ----------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR 159 (725)
T PRK13341 93 ----------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSR 159 (725)
T ss_pred ----------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhcc
Confidence 111112222222 24678999999975 44556655433 245556653 44321 1111 111
Q ss_pred CcEEEecCCChHHHHHHHHHHhcC------CCCCchHHHHHHHHHHHcCCChH
Q 000202 1125 NMVVKLETLSMKDAWELFCKEVGG------IIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1125 ~~~~~l~~L~~~~a~~Lf~~~~~~------~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
..++.+++|+.++...++.+.+.. .....--++....|++.+.|.--
T Consensus 160 ~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 160 SRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred ccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 357899999999999999876541 11111123445667888887643
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0011 Score=83.84 Aligned_cols=180 Identities=17% Similarity=0.172 Sum_probs=107.2
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc-cccc--eEEEE---------------
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR-HFEG--SYFAC--------------- 244 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~-~f~~--~~~~~--------------- 244 (1866)
....++||-+...+.|...+..+. -.+...++|..|+||||+|+.+++.+-. .... .|..+
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 345679999999999999987543 3456789999999999999999986532 1100 01000
Q ss_pred eeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEE
Q 000202 245 NVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVI 322 (1866)
Q Consensus 245 ~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~Ii 322 (1866)
..... .......+ +++....... -..+++-++|+|+++ +.+..++|+..+....+.+++|
T Consensus 90 eldaa-s~~gId~I-Relie~~~~~----------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FI 151 (535)
T PRK08451 90 EMDAA-SNRGIDDI-RELIEQTKYK----------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFI 151 (535)
T ss_pred Eeccc-cccCHHHH-HHHHHHHhhC----------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEE
Confidence 00000 00001111 1111110000 011345688999997 4566777877777666778888
Q ss_pred EEccccch-hccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 323 ITTRDKQV-LTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 323 iTTR~~~v-~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
++|.+..- .... .....+++.+++.++..+.+...+-.... .-..+.+..|++.++|-+
T Consensus 152 L~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi--~i~~~Al~~Ia~~s~Gdl 212 (535)
T PRK08451 152 LATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV--SYEPEALEILARSGNGSL 212 (535)
T ss_pred EEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcH
Confidence 77766422 1111 22468899999999998888765532221 112456778888888765
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0017 Score=78.09 Aligned_cols=91 Identities=10% Similarity=0.132 Sum_probs=62.3
Q ss_pred CcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccccch-hccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCC
Q 000202 290 KKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDKQV-LTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLD 365 (1866)
Q Consensus 290 k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 365 (1866)
++-++|+|+++ +.+..+.++..+....+++.+|+||.+... +... .....+.+.+++.+++.+.+.... ...
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~--- 181 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PES--- 181 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccC---
Confidence 33445679998 466777887777766677888888877643 3221 234678999999999999887653 111
Q ss_pred hhHHHHHHHHHHHhCCCccee
Q 000202 366 AGYTELAHKALKYAQGVPLAL 386 (1866)
Q Consensus 366 ~~~~~~~~~i~~~~~GlPLAl 386 (1866)
..+.+..++..++|.|+..
T Consensus 182 --~~~~~~~~l~la~Gsp~~A 200 (328)
T PRK05707 182 --DERERIELLTLAGGSPLRA 200 (328)
T ss_pred --ChHHHHHHHHHcCCCHHHH
Confidence 1234567788999999643
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00026 Score=89.82 Aligned_cols=186 Identities=10% Similarity=0.007 Sum_probs=102.9
Q ss_pred cccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhcc
Q 000202 978 TAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 1056 (1866)
.++.|.+.-++.+.+++...+.. .+.++|+.|+||||+|+.+++.-.-.+.+...+|.|.+. +.+......
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~~~~h~ 85 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVRRGAHP 85 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHhcCCCC
Confidence 34567666777777777666554 458999999999999999865332212222222322211 000000000
Q ss_pred -----CCCCccCHHHHHHHHHHH-----hCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccC-ChhhhccC-
Q 000202 1057 -----HCKDRETDAQVAEKLWQV-----LNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASR-ELDVCRNM- 1122 (1866)
Q Consensus 1057 -----~~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR-~~~v~~~~- 1122 (1866)
........+++ ..+.+. ..+++-++|+|+++.. ..++.+...+........+|++|. ...+....
T Consensus 86 dv~el~~~~~~~vd~i-R~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 86 DVLEIDAASNNSVEDV-RDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred ceEEecccccCCHHHH-HHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 00001111111 112222 2356678999999853 446666655544334455555554 33432222
Q ss_pred CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1123 DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1123 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
.....+++.+++.++..+.+.+.+....... -.+....|++.++|.+--+
T Consensus 165 SRc~~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 165 SRTQHFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDA 214 (504)
T ss_pred cceEEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 1236899999999999999988764322111 2345677999999988543
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00038 Score=83.24 Aligned_cols=90 Identities=17% Similarity=0.120 Sum_probs=63.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC--CCHHHHHHHHHHHhccCCCCccCHH------HHHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY--WNTRKIQKQVLRQLSLHCKDRETDA------QVAEK 1070 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~ 1070 (1866)
-..++|+|.+|+|||||++.+++..... +|+..+||.+.+. .++.++++.+...+-....+..... .+.+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 3569999999999999999998765444 7999999998855 7999999999654433222221111 11222
Q ss_pred HHHH-hCCCcEEEEEeCCCC
Q 000202 1071 LWQV-LNGEKFLLLLDDVWE 1089 (1866)
Q Consensus 1071 l~~~-L~~kr~LlVlDdv~~ 1089 (1866)
.... -+|++++|++|++..
T Consensus 247 Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHcCCCeEEEEEChhH
Confidence 2222 368999999999965
|
Members of this family differ in the specificity of RNA binding. |
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0014 Score=79.43 Aligned_cols=180 Identities=13% Similarity=0.101 Sum_probs=97.6
Q ss_pred ccccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccc-eEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFH-VIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+.++.|..+.++.+..++...+.+.+-++|.+|+||||+|+.+.+.-. ...|. .++-+..+...+.. ..+.+.+.+.
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~ 89 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNKIKMFA 89 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHHHHHHH
Confidence 344566666667677777666666678999999999999999854311 11121 11122222222222 2222222111
Q ss_pred cCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCCh-hhhccC-CCCcEEEec
Q 000202 1056 LHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASREL-DVCRNM-DVNMVVKLE 1131 (1866)
Q Consensus 1056 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~-~~~~~~~l~ 1131 (1866)
..... .-.++.-+++||+++.- ...+.+...+......+++|+++... .+.... .-...++++
T Consensus 90 ~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~ 156 (319)
T PLN03025 90 QKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFS 156 (319)
T ss_pred hcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCC
Confidence 10000 00245668999999863 22333433333233456777766543 221111 112578999
Q ss_pred CCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHH
Q 000202 1132 TLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLL 1172 (1866)
Q Consensus 1132 ~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLA 1172 (1866)
++++++....+.+.+......- -.+....|++.|+|..-.
T Consensus 157 ~l~~~~l~~~L~~i~~~egi~i-~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 157 RLSDQEILGRLMKVVEAEKVPY-VPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 9999999888887664322111 133467788899887643
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0013 Score=81.08 Aligned_cols=195 Identities=13% Similarity=0.056 Sum_probs=100.3
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccc-eEEEEEecCCCCH--HHHHH--HHHHH
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFH-VIIWVTVSRYWNT--RKIQK--QVLRQ 1053 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~--~~~~~--~i~~~ 1053 (1866)
.+.|+++.++.+.+++.....+.+.++|..|+||||+|+.+.+.-.- ..+. ..+.++++...+. ..+.. .....
T Consensus 16 ~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 94 (337)
T PRK12402 16 DILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFDQGKKYLVEDPRFAHF 94 (337)
T ss_pred HhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhhcchhhhhcCcchhhh
Confidence 45677777888888887666667889999999999999998553221 1121 2234443321100 00000 00000
Q ss_pred hccCCCCccCHHHHHHHH-HHH---h--CCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCCh-hhhccC-C
Q 000202 1054 LSLHCKDRETDAQVAEKL-WQV---L--NGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASREL-DVCRNM-D 1123 (1866)
Q Consensus 1054 l~~~~~~~~~~~~~~~~l-~~~---L--~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~-~ 1123 (1866)
++..........+....+ ... . .+.+-+||+||+... ...+.+...+......+++|+||... .+.... .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~s 174 (337)
T PRK12402 95 LGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRS 174 (337)
T ss_pred hhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcC
Confidence 000000000011111111 111 1 234458999999753 22333333332223446777776543 222211 1
Q ss_pred CCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 000202 1124 VNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIV 1175 (1866)
Q Consensus 1124 ~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~ 1175 (1866)
....+.+.+++.++....+.+.+...... --.+....+++.++|.+-.+..
T Consensus 175 r~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 175 RCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 13578899999999888888765432211 1234566788889887655443
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00046 Score=90.18 Aligned_cols=174 Identities=18% Similarity=0.165 Sum_probs=93.4
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc--cc---cceEEEEeeccccccccHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR--HF---EGSYFACNVRAAEETGRLD 256 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~--~f---~~~~~~~~~~~~~~~~~~~ 256 (1866)
|...+.++|++..++.+.+.+... ....+.|+|.+|+||||||+.+++.... .+ ...-|+...... ......
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~-l~~d~~ 226 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT-LRWDPR 226 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh-ccCCHH
Confidence 344567999999999888777533 3456999999999999999999874421 11 122344322210 011111
Q ss_pred HHHHHHH---------------HHHhcc-----------------ccccCccchhHHHHHHHhhcCcEEEEEecCCC--H
Q 000202 257 DLRKELL---------------SKLLND-----------------RNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--P 302 (1866)
Q Consensus 257 ~l~~~ll---------------~~~~~~-----------------~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~ 302 (1866)
.+...++ ...... +.....+...+..+.+.+++++++++-|+.|. .
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 1111110 000000 00011111123555666677777777665543 2
Q ss_pred HHHHHHhhccCCCCCCCEEEE--Eccccchhcc-C-ccceeeecCCCCHHHHHHHHHhhc
Q 000202 303 RQIELLIGRLDRFASGSQVII--TTRDKQVLTN-C-EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 303 ~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~~~-~-~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
..|+.+...+....+...|+| ||++...... . .....+.+.+++.+|.++++.+.+
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a 366 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAA 366 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHH
Confidence 334555444443344444555 6665532211 1 123467889999999999998765
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0016 Score=82.56 Aligned_cols=188 Identities=12% Similarity=0.096 Sum_probs=103.2
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc---c--cceEEEEeeccccccccHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH---F--EGSYFACNVRAAEETGRLDD 257 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~---f--~~~~~~~~~~~~~~~~~~~~ 257 (1866)
....+++|-+..++.+...+..+. -.+...++|..|+||||+|+.++..+... . ++..- .+....... ...+
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c-~nc~~i~~g-~~~d 89 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC-ENCVEIDKG-SFPD 89 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc-HHHHHHhcC-CCCc
Confidence 344679999999999999997643 34567789999999999999999865321 0 00000 000000000 0000
Q ss_pred HHHHHHHHHhccccccCccchh-HHHHHHH-----hhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEc-ccc
Q 000202 258 LRKELLSKLLNDRNVKNFQNIS-VNFQSKR-----LARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITT-RDK 328 (1866)
Q Consensus 258 l~~~ll~~~~~~~~~~~~~~~~-~~~l~~~-----L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTT-R~~ 328 (1866)
+..-.. ......+ ...+.+. ..+++-++|+|+++. ....+.++..+....+...+|++| +..
T Consensus 90 --------~~eida-as~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~ 160 (486)
T PRK14953 90 --------LIEIDA-ASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYD 160 (486)
T ss_pred --------EEEEeC-ccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHH
Confidence 000000 0000000 0112221 234566999999974 455677776666555566666555 333
Q ss_pred chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 329 QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 329 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
.+.... .....+++.+++.++....+...+-.... .-..+.+..+++.++|.+.
T Consensus 161 kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr 215 (486)
T PRK14953 161 KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMR 215 (486)
T ss_pred HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 332211 22457899999999988888765522111 1223556778888887653
|
|
| >COG3903 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00034 Score=82.46 Aligned_cols=286 Identities=17% Similarity=0.176 Sum_probs=164.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCC-CHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYW-NTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
.+-+.++|.|||||||++-++ .+ +...|..-.|+.--.+. +...+.-.....++...... +.....+.....+
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~--a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~~ 87 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQA--AH-AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIGD 87 (414)
T ss_pred hheeeeeccCccceehhhhhh--Hh-HhhhcccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHhh
Confidence 356899999999999999988 44 66778655554444444 44444444455466543322 2234556677889
Q ss_pred CcEEEEEeCCCCccc-hhhhcCCCCCCCCCcEEEEccCChhhhccCCCCcEEEecCCChH-HHHHHHHHHhcCCC----C
Q 000202 1078 EKFLLLLDDVWEQID-LEAVGIPVPGSENGSKIFMASRELDVCRNMDVNMVVKLETLSMK-DAWELFCKEVGGII----Q 1151 (1866)
Q Consensus 1078 kr~LlVlDdv~~~~~-~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~l~~L~~~-~a~~Lf~~~~~~~~----~ 1151 (1866)
+|.++|+||-....+ -..+...+..+...-.|+.|+|+.. .+..+..+.+..|+.. ++.++|...+.... -
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~---l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAI---LVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhh---cccccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 999999999754311 1111112222334456788888533 3345677888888865 78899986653211 1
Q ss_pred CchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHh-hhC---CCCccccccchhhHHHHHHHhHhccCCcchh
Q 000202 1152 SPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHAS-RKF---SLPITIEECCTEDLIELLKFSFDQLKDHDVK 1227 (1866)
Q Consensus 1152 ~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~-~~~---~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~lk 1227 (1866)
...-.....+|.++..|.|++|...++..++- ...+--..+ +.+ .................+.+||.-|... -+
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw-e~ 242 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW-ER 242 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH-HH
Confidence 12234567789999999999999999888762 222222211 111 1111111112344677899999999877 57
Q ss_pred HHHHhhcCCCCCccccHHHHHHHHHHcCccchhhHhHHHhHHHHHHHHHHhhhhhcccc--cCcccchhHHHHHHHH
Q 000202 1228 SCFLHCSLFPEDREVSIVEFIDYCIQEGIIVGTLANAHKRGHQIVDVLVDASLLLINEV--HNSIRMPGLMKDLAFG 1302 (1866)
Q Consensus 1228 ~cfly~s~Fp~~~~i~~~~Li~~W~aeG~i~~~~~~~~~~~~~~~~~L~~~sll~~~~~--~~~~~mhdlv~dla~~ 1302 (1866)
--|--++.|...+.-. ...|.+-|-... ...-....-+..+++.|++...+. ...++.-+-++.++..
T Consensus 243 ~~~~rLa~~~g~f~~~----l~~~~a~g~~~~---~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yala 312 (414)
T COG3903 243 ALFGRLAVFVGGFDLG----LALAVAAGADVD---VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALA 312 (414)
T ss_pred HHhcchhhhhhhhccc----HHHHHhcCCccc---cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 8888888888765543 233444432110 001112223345667776653322 1234444445555443
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.001 Score=76.50 Aligned_cols=148 Identities=11% Similarity=0.028 Sum_probs=84.6
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
....+.|+|..|+|||+|++++++...- ....+.|+++.+ ....+.. ..+.+.
T Consensus 40 ~~~~l~l~G~~G~GKThL~~a~~~~~~~--~~~~~~y~~~~~------~~~~~~~------------------~~~~l~- 92 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALALCAAAEQ--AGRSSAYLPLQA------AAGRLRD------------------ALEALE- 92 (233)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEeHHH------hhhhHHH------------------HHHHHh-
Confidence 3356999999999999999999654222 223445665322 1111110 111121
Q ss_pred CcEEEEEeCCCCc---cchhhhcCCCCC--CCCCcEEEEccCChh---------hhccCCCCcEEEecCCChHHHHHHHH
Q 000202 1078 EKFLLLLDDVWEQ---IDLEAVGIPVPG--SENGSKIFMASRELD---------VCRNMDVNMVVKLETLSMKDAWELFC 1143 (1866)
Q Consensus 1078 kr~LlVlDdv~~~---~~~~~l~~~l~~--~~~gs~IivTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~Lf~ 1143 (1866)
+--+|||||+... ..|....-.+.+ ..+|..||+|++... +...+....++++++++.++-.+++.
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~ 172 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLR 172 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHH
Confidence 2348999999743 223321111111 124667999888532 22333334689999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1144 KEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1144 ~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
+++....- .--++...-|++.|.|-.-.+
T Consensus 173 ~~a~~~~l-~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 173 ERAQRRGL-ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHcCC-CCCHHHHHHHHHhCCCCHHHH
Confidence 86643211 112344556777777765444
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00075 Score=90.82 Aligned_cols=170 Identities=16% Similarity=0.182 Sum_probs=93.3
Q ss_pred hhhhhHHHHhhcccccccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc-----c-c
Q 000202 165 LVADIANEVLERLDDTFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH-----F-E 238 (1866)
Q Consensus 165 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~-----f-~ 238 (1866)
.+.+...++..+.. +...++++||+.++..+...|.... ..-+.++|.+|+|||++|+.+++++... + .
T Consensus 164 ~l~~~~~~l~~~~r---~~~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~ 238 (731)
T TIGR02639 164 ALEKYTVDLTEKAK---NGKIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKN 238 (731)
T ss_pred HHHHHhhhHHHHHh---cCCCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcC
Confidence 45555555544433 2344679999999999999887543 2346799999999999999999976442 1 2
Q ss_pred ceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-----------HHHHH
Q 000202 239 GSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-----------RQIEL 307 (1866)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-----------~~~~~ 307 (1866)
..+|..+... +.. +..............+.+.-+.++++|++|+++.. +.-+.
T Consensus 239 ~~~~~~~~~~---------l~a-------~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~ 302 (731)
T TIGR02639 239 AKIYSLDMGS---------LLA-------GTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNL 302 (731)
T ss_pred CeEEEecHHH---------Hhh-------hccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHH
Confidence 2333322111 100 00000000000111122211346899999998732 12233
Q ss_pred HhhccCCCCCC-CEEEEEccccchhcc------C-ccceeeecCCCCHHHHHHHHHhhc
Q 000202 308 LIGRLDRFASG-SQVIITTRDKQVLTN------C-EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 308 l~~~~~~~~~g-s~IiiTTR~~~v~~~------~-~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
+.+.+. .| -++|-+|..+..-.. . ....++++++++.++..+++....
T Consensus 303 L~~~l~---~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 303 LKPALS---SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHh---CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 444432 23 344544443211000 0 123578999999999999988544
|
|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0023 Score=73.71 Aligned_cols=152 Identities=21% Similarity=0.294 Sum_probs=94.8
Q ss_pred CCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 186 KDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
.+.=|-+..+++|.+.... +-...+-|.+||++|.|||-||++++++.... |+.+++.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvvgS------ 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVVGS------ 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-----EEEeccH------
Confidence 3455677778877775542 12346679999999999999999999986554 4554443
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHh-hcCcEEEEEecCCCH-------------H---HHHHHhhccCCCCC
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRL-ARKKVLIVFDDVNHP-------------R---QIELLIGRLDRFAS 317 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~-------------~---~~~~l~~~~~~~~~ 317 (1866)
++.++..++.. .....+.+.. .+.+..|.+|.++.. + .+-.|+..+..|.+
T Consensus 220 ------ElVqKYiGEGa------RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 220 ------ELVQKYIGEGA------RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred ------HHHHHHhccch------HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 33333333322 1111122222 456889999998641 1 23345555555544
Q ss_pred --CCEEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhcCC
Q 000202 318 --GSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCAFR 360 (1866)
Q Consensus 318 --gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~ 360 (1866)
.-+||..|...+++.-. ..+..++++.-+.+.-.+.|.-|+-+
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk 337 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK 337 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh
Confidence 45888877766554322 23678899977777778888877743
|
|
| >PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00023 Score=73.56 Aligned_cols=88 Identities=26% Similarity=0.422 Sum_probs=46.2
Q ss_pred ccEEEccccccccCchHHHHHHHHhhC-------CCce-E---------eeC-CCCCCCCCchhHHHHhhhcceEEEEec
Q 000202 16 YDVFLSFRGEDTRDNFTSHLYSALCQN-------NVET-F---------IDN-DLKRGDEIPESLLGTIEASTISIIIFS 77 (1866)
Q Consensus 16 ~dvFis~~~~d~~~~~~~~l~~~L~~~-------g~~~-~---------~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S 77 (1866)
|.|||||+++|.. ..+..|...+... .+.. | .+. +....+.|...|.++|..|.++||++|
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 6799999999853 3667677666662 2221 1 111 223445789999999999999999999
Q ss_pred cCcccchhhHHHHHHHHHHHhhCCCEEEEEE
Q 000202 78 EKYASSKWCLDELLKILECKRNYGQIVIPVF 108 (1866)
Q Consensus 78 ~~y~~s~~c~~El~~~~~~~~~~~~~v~pvf 108 (1866)
++-..|.|+..|+..+++ .+..|+-|.
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~ 106 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVY 106 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEE
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEE
Confidence 999999999999998886 344566553
|
The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A. |
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0014 Score=82.35 Aligned_cols=155 Identities=15% Similarity=0.178 Sum_probs=88.4
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccc--eEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHH
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEG--SYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKR 286 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~ 286 (1866)
...+.|+|.+|+|||+||+++++.+..+.+. ++|+. . ..+..++...+... ......+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~---------~~~~~~~~~~~~~~---------~~~~~~~~ 196 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-S---------EKFTNDFVNALRNN---------KMEEFKEK 196 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-H---------HHHHHHHHHHHHcC---------CHHHHHHH
Confidence 4568999999999999999999987765432 33432 1 12223333333211 11223334
Q ss_pred hhcCcEEEEEecCCCH----HHHHHHhhccCC-CCCCCEEEEEcccc-c--------hhccCccceeeecCCCCHHHHHH
Q 000202 287 LARKKVLIVFDDVNHP----RQIELLIGRLDR-FASGSQVIITTRDK-Q--------VLTNCEVDHIYQMKELVHADAHK 352 (1866)
Q Consensus 287 L~~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~ 352 (1866)
+++ .-+|||||++.. ..-+.+...+.. ...|..+||||... . +...+....++++++.+.++-.+
T Consensus 197 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 197 YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 443 347889999732 111222222211 12356788888642 1 12222233578999999999999
Q ss_pred HHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce
Q 000202 353 LFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 353 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
++.+.+-... ..-.++....|++.+.|.+-.
T Consensus 276 il~~~~~~~~--~~l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 276 ILQKKAEEEG--LELPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHHHHcC--CCCCHHHHHHHHHhcCCCHHH
Confidence 9988774322 122245667777777776543
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0018 Score=81.94 Aligned_cols=194 Identities=11% Similarity=0.041 Sum_probs=105.0
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccc---cccceEEEEEecCCCCHHHHHHHHH
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVK---VMFHVIIWVTVSRYWNTRKIQKQVL 1051 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~i~ 1051 (1866)
.+.+++|.+.-++.+.+.+...+.. .+.++|..|+||||+|+.+.+.-.-. .... ..+.++..-...+.|.
T Consensus 14 tFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-----~~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-----ITAQPCGQCRACTEID 88 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-----CCCCCCcccHHHHHHH
Confidence 3445677777788888888766654 46889999999999999985421110 0000 0000111111111111
Q ss_pred HHh-----ccCCCCccCHHHHHHHHHHH----hCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCC-hhhh
Q 000202 1052 RQL-----SLHCKDRETDAQVAEKLWQV----LNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRE-LDVC 1119 (1866)
Q Consensus 1052 ~~l-----~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~ 1119 (1866)
..- ..+.......+++.+.+... ..++.-++|||+++. ...++.+...+..-..+.++|++|.+ ..+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 100 00000111122222222111 245667899999985 35567766666543445565555544 4443
Q ss_pred ccCC-CCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 000202 1120 RNMD-VNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIV 1175 (1866)
Q Consensus 1120 ~~~~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~ 1175 (1866)
.... -...|.++.++.++..+.+.+.+....... ..+..+.|++.++|.|.-...
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~-d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-EVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 2211 126789999999999988887664322111 123456789999999864443
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0018 Score=84.40 Aligned_cols=175 Identities=16% Similarity=0.151 Sum_probs=105.3
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc-----------------------ccce
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH-----------------------FEGS 240 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~-----------------------f~~~ 240 (1866)
...++||-+...+.|...+..+. -.+.+.++|..|+||||+|+.++..+... |+..
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~ 93 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH 93 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE
Confidence 44679999999999999987542 35568899999999999999999865321 1100
Q ss_pred EEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCC
Q 000202 241 YFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASG 318 (1866)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~g 318 (1866)
.+. .. .... .+-.++++.++... -..+++=++|+|+++. .+..+.|+..+......
T Consensus 94 -~ld-~~---~~~~-vd~Ir~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ 151 (614)
T PRK14971 94 -ELD-AA---SNNS-VDDIRNLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY 151 (614)
T ss_pred -Eec-cc---ccCC-HHHHHHHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC
Confidence 000 00 0000 01111111111000 0123455789999974 55677787777765667
Q ss_pred CEEEEEc-cccchhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 319 SQVIITT-RDKQVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 319 s~IiiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
+.+|++| +...+.... ....++++++++.++....+.+.+-.... .-..+.+..|++.++|-.
T Consensus 152 tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi--~i~~~al~~La~~s~gdl 216 (614)
T PRK14971 152 AIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI--TAEPEALNVIAQKADGGM 216 (614)
T ss_pred eEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 7766655 444444322 23568999999999998888765532221 122345677888887643
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0018 Score=84.66 Aligned_cols=191 Identities=14% Similarity=0.135 Sum_probs=107.2
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....++||-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+.......- ...+ ......+.+
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~----~~~c----~~c~~c~~i 83 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK----GRPC----GTCEMCRAI 83 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC----CCCC----ccCHHHHHH
Confidence 344689999999999998887543 3456789999999999999999986642111000 0000 000111111
Q ss_pred HHHHhccc-cccCccchhHH---HHHHHh-----hcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEcccc-ch
Q 000202 263 LSKLLNDR-NVKNFQNISVN---FQSKRL-----ARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDK-QV 330 (1866)
Q Consensus 263 l~~~~~~~-~~~~~~~~~~~---~l~~~L-----~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v 330 (1866)
......+. ..........+ .+.+.+ ..++-++|+|+++ +.+..+.|+..+......+.+|++|.+. .+
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 11000000 00000001111 111111 2356689999997 4456777777766555667777666443 33
Q ss_pred hccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 331 LTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 331 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
.... .....+++..++.++....+.+.+..... .-..+.+..+++.++|.+.
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl--~i~~eal~~La~~s~Gdlr 216 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI--NLEPGALEAIARAATGSMR 216 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 2211 22357889999999988888776533221 1124567788888888664
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00081 Score=75.82 Aligned_cols=128 Identities=13% Similarity=0.079 Sum_probs=72.6
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLAR 289 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~ 289 (1866)
+.+.|||.+|+|||+|++++++.... .++.... ... +..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~~----------~~~------------------------~~~~- 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDIF----------FNE------------------------EILE- 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchhh----------hch------------------------hHHh-
Confidence 56899999999999999998775422 2221000 000 0111
Q ss_pred CcEEEEEecCCCHHH--HHHHhhccCCCCCCCEEEEEccccchh-------ccCccceeeecCCCCHHHHHHHHHhhcCC
Q 000202 290 KKVLIVFDDVNHPRQ--IELLIGRLDRFASGSQVIITTRDKQVL-------TNCEVDHIYQMKELVHADAHKLFTQCAFR 360 (1866)
Q Consensus 290 k~~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~IiiTTR~~~v~-------~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 360 (1866)
..-+|++||++..++ +-.+...+. ..|..||+|++..... ..+...-++++++++.++-..++.+.+-.
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 234678899974332 222222221 3467899999855331 11222347899999999888888776531
Q ss_pred CCCCChhHHHHHHHHHHHhCC
Q 000202 361 GDHLDAGYTELAHKALKYAQG 381 (1866)
Q Consensus 361 ~~~~~~~~~~~~~~i~~~~~G 381 (1866)
.. ..-.++..+-|++.+.|
T Consensus 163 ~~--l~l~~ev~~~L~~~~~~ 181 (214)
T PRK06620 163 SS--VTISRQIIDFLLVNLPR 181 (214)
T ss_pred cC--CCCCHHHHHHHHHHccC
Confidence 11 11124455556665544
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0013 Score=83.70 Aligned_cols=176 Identities=14% Similarity=0.163 Sum_probs=95.0
Q ss_pred CCCce-eehhhH--HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccc--eEEEEeeccccccccHHHHH
Q 000202 185 SKDLI-GVEWRI--KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEG--SYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 185 ~~~~v-Gr~~~l--~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~ 259 (1866)
.++|| |..... ....++..........+.|+|.+|+|||+||+++++.+..+++. ++|+. . ..+.
T Consensus 121 fd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~---------~~~~ 190 (450)
T PRK00149 121 FDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-S---------EKFT 190 (450)
T ss_pred ccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHH
Confidence 34444 544432 33333333222234578999999999999999999988776543 23332 1 1222
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----HHHHHHhhccCC-CCCCCEEEEEccccc-----
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----RQIELLIGRLDR-FASGSQVIITTRDKQ----- 329 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~~----- 329 (1866)
.++...+... ....+.+.+++ .-+|||||++.. ...+.+...+.. ...|..|||||....
T Consensus 191 ~~~~~~~~~~---------~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~ 260 (450)
T PRK00149 191 NDFVNALRNN---------TMEEFKEKYRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPG 260 (450)
T ss_pred HHHHHHHHcC---------cHHHHHHHHhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH
Confidence 3333332111 11223344443 447899999631 112222222111 123556888886531
Q ss_pred ----hhccCccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 330 ----VLTNCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 330 ----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
+...+....++++++++.++-.+++.+.+-... ..-.++...-|++.++|.
T Consensus 261 l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~--~~l~~e~l~~ia~~~~~~ 315 (450)
T PRK00149 261 LEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG--IDLPDEVLEFIAKNITSN 315 (450)
T ss_pred HHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHcCcCCC
Confidence 122233345788999999999999988773211 112234556666665554
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00087 Score=77.12 Aligned_cols=163 Identities=12% Similarity=0.028 Sum_probs=90.9
Q ss_pred HHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHH
Q 000202 986 NVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDA 1065 (1866)
Q Consensus 986 ~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~ 1065 (1866)
.+..+.++......+.+.|+|+.|+|||+|++.+++.... .-..+.++++..... ...
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~--~~~~v~y~~~~~~~~--------------------~~~ 89 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ--RGRAVGYVPLDKRAW--------------------FVP 89 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEEHHHHhh--------------------hhH
Confidence 3334444433444567899999999999999998653221 123445665532100 000
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCc---cchhhhc-CCCCC-CCCC-cEEEEccCCh---------hhhccCCCCcEEEe
Q 000202 1066 QVAEKLWQVLNGEKFLLLLDDVWEQ---IDLEAVG-IPVPG-SENG-SKIFMASREL---------DVCRNMDVNMVVKL 1130 (1866)
Q Consensus 1066 ~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~-~~l~~-~~~g-s~IivTTR~~---------~v~~~~~~~~~~~l 1130 (1866)
+ +.+.+.. --+|++||+... .+|+... ..+.. ...| .++|+||+.. .+..++....++++
T Consensus 90 ~----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l 164 (235)
T PRK08084 90 E----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 164 (235)
T ss_pred H----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeee
Confidence 1 1111211 137889999752 3444221 11111 1133 3688888754 23444555679999
Q ss_pred cCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000202 1131 ETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1131 ~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
+++++++-.+++.+++.... -.--++...-|++.+.|..-++..+
T Consensus 165 ~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 165 QPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred cCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHHH
Confidence 99999999999887664321 1112345566777777765544433
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0031 Score=77.69 Aligned_cols=189 Identities=13% Similarity=0.097 Sum_probs=101.3
Q ss_pred ccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+.+++|.+..++.+.+.+...+.+ .+.++|+.|+||||+|+.+...-.-..... ..++..-...+++.....
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 345667777777777777655543 568999999999999999954321110000 001111111111111100
Q ss_pred cC-----CCCccCHHHHHHHHHHHh-----CCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCCh-hhhccC
Q 000202 1056 LH-----CKDRETDAQVAEKLWQVL-----NGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASREL-DVCRNM 1122 (1866)
Q Consensus 1056 ~~-----~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~ 1122 (1866)
.+ .......++. ..+.+.+ .+++-++|+|++... ..++.+...+.......++|++|.+. .+....
T Consensus 88 ~d~~~~~~~~~~~v~~i-r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 88 LDLIEIDAASRTKVEEM-REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred CceEEecccccCCHHHH-HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHH
Confidence 00 0000111111 1122221 345568999999864 34666655554444556677666543 332221
Q ss_pred -CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHH
Q 000202 1123 -DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTI 1174 (1866)
Q Consensus 1123 -~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~ 1174 (1866)
+-...+++++++.++..+.+.+.+...... --++.+..|++.++|.|-.+.
T Consensus 167 ~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~-i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 167 LSRCLQFKLKIISEEKIFNFLKYILIKESID-TDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 113688999999999988887655332111 113446678889999885433
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00041 Score=82.94 Aligned_cols=92 Identities=13% Similarity=0.106 Sum_probs=61.6
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhcc-ccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhH------H
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISV------N 281 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~------~ 281 (1866)
-..++|+|.+|+|||||++.+++.+..+ |+..+|+..+++ ......++++.++..+.............. +
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3468999999999999999999977665 999999998876 444567788877554433222111111000 1
Q ss_pred HHH-HHhhcCcEEEEEecCCCH
Q 000202 282 FQS-KRLARKKVLIVFDDVNHP 302 (1866)
Q Consensus 282 ~l~-~~L~~k~~LlVlDdv~~~ 302 (1866)
..+ .+-.+++++|++|++...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 111 123679999999999753
|
Members of this family differ in the specificity of RNA binding. |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=8.7e-05 Score=97.07 Aligned_cols=138 Identities=22% Similarity=0.216 Sum_probs=90.7
Q ss_pred CCCcEEEccCCCCC--CCChhhc-CCCCCcEEecccccCcc-cCCccccCCCCCcEEEccCCCCCcCChhhcCCCcccee
Q 000202 1422 TSLKVLNLSKTRIK--SLPETLV-NLKCLQILILRDCDFLF-VLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL 1497 (1866)
Q Consensus 1422 ~~L~~L~Ls~~~i~--~lp~~i~-~L~~L~~L~L~~~~~~~-~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L 1497 (1866)
.+|++||++|...- .-|..++ .|++|+.|.+++-.+.. .+-.-..+++||..||+|+|+++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 57888888876532 4455555 46888888888754322 1223345789999999999999988 789999999999
Q ss_pred ccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCcc
Q 000202 1498 TVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIE 1571 (1866)
Q Consensus 1498 ~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 1571 (1866)
.+.+..-.+.. ....+-+|++|+.|+++.......- ........--..|++|+.|++++..+.
T Consensus 201 ~mrnLe~e~~~----------~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQ----------DLIDLFNLKKLRVLDISRDKNNDDT-KIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchh----------hHHHHhcccCCCeeeccccccccch-HHHHHHHHhcccCccccEEecCCcchh
Confidence 88553221111 1223668999999999864433211 111112223356899999999977654
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0022 Score=81.35 Aligned_cols=191 Identities=13% Similarity=0.052 Sum_probs=103.7
Q ss_pred cccccchhhHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHh
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQL 1054 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 1054 (1866)
.+..++|.+..++.+.+++...+. ..+.++|..|+||||+|+.+.+.-.-....+ ..+++.-...+.+...-
T Consensus 13 tFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~-------~~pCg~C~sC~~I~~g~ 85 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVT-------STPCEVCATCKAVNEGR 85 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCC-------CCCCccCHHHHHHhcCC
Confidence 444567777788888888876654 4668999999999999998854221110000 01111111111111100
Q ss_pred cc-----CCCCccCHHHHHHHHH----HHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCChh-hhcc-
Q 000202 1055 SL-----HCKDRETDAQVAEKLW----QVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRELD-VCRN- 1121 (1866)
Q Consensus 1055 ~~-----~~~~~~~~~~~~~~l~----~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~- 1121 (1866)
.. +.......++..+.+. .-..++.-++|+|++... ...+.+...+.....+.++|++|.+.. +...
T Consensus 86 hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TI 165 (702)
T PRK14960 86 FIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITV 165 (702)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHH
Confidence 00 0000111122111111 112456678999999863 445555555544345567777776533 2111
Q ss_pred CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHH
Q 000202 1122 MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTI 1174 (1866)
Q Consensus 1122 ~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~ 1174 (1866)
..-...+++++++.++..+.+.+.+......- -.+....|++.++|.+-.+.
T Consensus 166 lSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i-d~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 166 ISRCLQFTLRPLAVDEITKHLGAILEKEQIAA-DQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHhhheeeccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 12236899999999999888877664322111 13345678889999775443
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.008 Score=73.19 Aligned_cols=192 Identities=15% Similarity=0.253 Sum_probs=118.6
Q ss_pred cchhhHHHHHHHHHh----ccCCccEEEEEcCCCchHHHHHHHHhcCcccccccc--eEEEEEecCCCCHHHHHHHHHHH
Q 000202 980 VNYTQRNVRKIFRYV----NDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFH--VIIWVTVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~ 1053 (1866)
+.+|+++++++...+ ......-+.|+|..|+|||+.++.+.. +++.... .+++|++-...+..++...|+.+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 457788888888777 333334488999999999999999954 3322211 17899999999999999999999
Q ss_pred hccCCCCccCHHHHHHHHHHHhC--CCcEEEEEeCCCCccc-----hhhhcCCCCCCCCCcEEE--EccCChhh------
Q 000202 1054 LSLHCKDRETDAQVAEKLWQVLN--GEKFLLLLDDVWEQID-----LEAVGIPVPGSENGSKIF--MASRELDV------ 1118 (1866)
Q Consensus 1054 l~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~-----~~~l~~~l~~~~~gs~Ii--vTTR~~~v------ 1118 (1866)
++..........+..+.+.+.+. ++.++||||+++.... +-.|...... .+++|+ ..+.+-..
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~--~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGE--NKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccc--cceeEEEEEEeccHHHHHHhhh
Confidence 97544444555666777777774 5789999999975321 2222221111 145443 34444332
Q ss_pred --hccCCCCcEEEecCCChHHHHHHHHHHhcCC----CCCchHHHHHHHHHHHcCC-ChHHHHHH
Q 000202 1119 --CRNMDVNMVVKLETLSMKDAWELFCKEVGGI----IQSPDIHLYARAIVKGCCG-LPLLTIVT 1176 (1866)
Q Consensus 1119 --~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~----~~~~~~~~~~~~I~~~c~G-lPLAi~~~ 1176 (1866)
....+. ..+..++-+.++-.+.+..++... .-.++.-+++..++..-+| .=.||..+
T Consensus 175 rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 175 RVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 222222 236788888888888888776321 2233333444444444444 33344433
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0014 Score=88.59 Aligned_cols=166 Identities=13% Similarity=0.167 Sum_probs=93.9
Q ss_pred hhhhhHHHHhhcccccccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc------c
Q 000202 165 LVADIANEVLERLDDTFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF------E 238 (1866)
Q Consensus 165 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f------~ 238 (1866)
.+++...++..+.. +...+.+|||+.++..+...|.... ..-+.++|.+|+||||||+.+++++.... .
T Consensus 169 ~l~~~~~~L~~~~r---~~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~ 243 (852)
T TIGR03345 169 ALDQYTTDLTAQAR---EGKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRN 243 (852)
T ss_pred hHHHHhhhHHHHhc---CCCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccC
Confidence 45555555544433 3345689999999999999887543 22456999999999999999999875432 1
Q ss_pred ceEEEEeecccccc----ccHHHHHHHHHHHHhccccccCccchhHHHHHHHh-hcCcEEEEEecCCCH-------HHHH
Q 000202 239 GSYFACNVRAAEET----GRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRL-ARKKVLIVFDDVNHP-------RQIE 306 (1866)
Q Consensus 239 ~~~~~~~~~~~~~~----~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~-------~~~~ 306 (1866)
..+|..+.+..... ..+..-+++ .+.+.- .+++++|++|++... .+.+
T Consensus 244 ~~i~~l~l~~l~ag~~~~ge~e~~lk~--------------------ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d 303 (852)
T TIGR03345 244 VRLLSLDLGLLQAGASVKGEFENRLKS--------------------VIDEVKASPQPIILFIDEAHTLIGAGGQAGQGD 303 (852)
T ss_pred CeEEEeehhhhhcccccchHHHHHHHH--------------------HHHHHHhcCCCeEEEEeChHHhccCCCcccccc
Confidence 22332222211000 000111111 111111 246899999998642 1111
Q ss_pred ---HHhhccCCCCCCCEEEEEccccchhccC-------ccceeeecCCCCHHHHHHHHHhh
Q 000202 307 ---LLIGRLDRFASGSQVIITTRDKQVLTNC-------EVDHIYQMKELVHADAHKLFTQC 357 (1866)
Q Consensus 307 ---~l~~~~~~~~~gs~IiiTTR~~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~ 357 (1866)
.+.+.+.. ..-++|-||.....-... ....++.|++++.+++.+++...
T Consensus 304 ~~n~Lkp~l~~--G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 304 AANLLKPALAR--GELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred HHHHhhHHhhC--CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 23343321 234556555542211100 12358999999999999997543
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0031 Score=80.19 Aligned_cols=177 Identities=12% Similarity=0.089 Sum_probs=100.5
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCccc----c---------------cccceEEEE
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEV----K---------------VMFHVIIWV 1035 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~----~---------------~~F~~~~wv 1035 (1866)
.+..++|.+.-++.+.+.+...+.. .+.++|+.|+||||+|+.+++.-.- . +.|...+++
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 3445677777778888888665543 4778999999999999999642111 0 012222222
Q ss_pred EecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHH-HhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEc
Q 000202 1036 TVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQ-VLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMA 1112 (1866)
Q Consensus 1036 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivT 1112 (1866)
.......+.+ ..++.+.+.. -..+++-++|+|++.. ...++.+...+.......++|++
T Consensus 94 daas~~gvd~------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 94 DAASRTGVEE------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred ecccccCHHH------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 2211112211 1122222221 1245667999999975 34566666555544445666654
Q ss_pred cCC-hhhhcc-CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1113 SRE-LDVCRN-MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1113 TR~-~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
|.+ ..+... ..-...+++++++.++....+.+.+..... .--......|++.++|.+-
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi-~~e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI-NSDEQSLEYIAYHAKGSLR 215 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHH
Confidence 443 333322 112368999999999988777765432211 1123345668888998663
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=2.8e-05 Score=76.39 Aligned_cols=92 Identities=24% Similarity=0.298 Sum_probs=73.3
Q ss_pred CCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcE
Q 000202 1394 PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEV 1473 (1866)
Q Consensus 1394 ~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~ 1473 (1866)
+....|...+|++| .++.+|+.+....+.+..|+|++|.|+++|..+..++.|+.|+++.|+ +...|.-+..|.+|-.
T Consensus 50 ~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 50 SKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDM 127 (177)
T ss_pred hCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHH
Confidence 45567777788877 677788887777778888888888888888888888888888888887 4566777777888888
Q ss_pred EEccCCCCCcCChh
Q 000202 1474 LDLRGTEIKMLPKE 1487 (1866)
Q Consensus 1474 L~l~~~~i~~lp~~ 1487 (1866)
|+..+|.+..+|-.
T Consensus 128 Lds~~na~~eid~d 141 (177)
T KOG4579|consen 128 LDSPENARAEIDVD 141 (177)
T ss_pred hcCCCCccccCcHH
Confidence 88888888777754
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.003 Score=81.65 Aligned_cols=188 Identities=15% Similarity=0.129 Sum_probs=105.3
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....++||.+...+.+...+..+. -.+.+.++|..|+||||+|+.+++.+-..-... ...+.. ......+
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-----~~pC~~----C~~C~~i 82 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-----GEPCNE----CEICKAI 82 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-----CCCCCc----cHHHHHH
Confidence 445689999999999999998643 355677899999999999999998653211000 000000 0001111
Q ss_pred HHHHhccccccCc---cchhHH---HHHHH-----hhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEcccc-
Q 000202 263 LSKLLNDRNVKNF---QNISVN---FQSKR-----LARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDK- 328 (1866)
Q Consensus 263 l~~~~~~~~~~~~---~~~~~~---~l~~~-----L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~- 328 (1866)
... ...+...+ .+...+ .+... ..+++-++|+|+++ +......|+..+........+|++|...
T Consensus 83 ~~g--~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ 160 (559)
T PRK05563 83 TNG--SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160 (559)
T ss_pred hcC--CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChh
Confidence 000 00000000 001111 11111 23456688999998 4566777877766545566666555433
Q ss_pred chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 329 QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 329 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
.+.... .....+++.+++.++..+.+...+-.... .-..+.+..|++.++|-+.
T Consensus 161 ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi--~i~~~al~~ia~~s~G~~R 215 (559)
T PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI--EYEDEALRLIARAAEGGMR 215 (559)
T ss_pred hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 332221 22457889999999988888766532221 1124556777888877553
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.003 Score=74.80 Aligned_cols=128 Identities=16% Similarity=0.211 Sum_probs=71.2
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhcc--ccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISRH--FEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
-+.++|.+|+||||+|+.+++.+... .....|+.... .+ +...+.+... ......+.+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~--------~~----l~~~~~g~~~-----~~~~~~~~~--- 119 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR--------DD----LVGQYIGHTA-----PKTKEILKR--- 119 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH--------HH----HhHhhcccch-----HHHHHHHHH---
Confidence 58899999999999999988855432 11122333211 11 2222211111 001111221
Q ss_pred cCcEEEEEecCCC-----------HHHHHHHhhccCCCCCCCEEEEEccccchhcc--C------ccceeeecCCCCHHH
Q 000202 289 RKKVLIVFDDVNH-----------PRQIELLIGRLDRFASGSQVIITTRDKQVLTN--C------EVDHIYQMKELVHAD 349 (1866)
Q Consensus 289 ~k~~LlVlDdv~~-----------~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~--~------~~~~~~~l~~L~~~e 349 (1866)
-..-+|+||++.. .+..+.+...+.....+.+||+++.....-.. . .....+++++++.+|
T Consensus 120 a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 120 AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 1346889999962 23345556555544456677777653321111 0 113568999999999
Q ss_pred HHHHHHhhc
Q 000202 350 AHKLFTQCA 358 (1866)
Q Consensus 350 a~~Lf~~~a 358 (1866)
-.+++...+
T Consensus 200 l~~I~~~~l 208 (284)
T TIGR02880 200 LLVIAGLML 208 (284)
T ss_pred HHHHHHHHH
Confidence 999988765
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0009 Score=82.84 Aligned_cols=154 Identities=23% Similarity=0.312 Sum_probs=90.5
Q ss_pred cCCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccc
Q 000202 184 ESKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEET 252 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (1866)
...++.|.+..++++.+.+.. +-...+.|.++|.+|+|||++|++++++....| +.....
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f-----i~V~~s---- 251 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF-----LRVVGS---- 251 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE-----EEEecc----
Confidence 345678999999999887742 112345688999999999999999999876554 221111
Q ss_pred ccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccCCC-
Q 000202 253 GRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLDRF- 315 (1866)
Q Consensus 253 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~- 315 (1866)
.+. ....+.. .......+.....+.+.+|+||+++.. ..+..++..+..+
T Consensus 252 ----eL~----~k~~Ge~-----~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 252 ----ELI----QKYLGDG-----PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred ----hhh----hhhcchH-----HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 011 1110000 000111222223456788999987531 0122233222221
Q ss_pred -CCCCEEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhcC
Q 000202 316 -ASGSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCAF 359 (1866)
Q Consensus 316 -~~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~ 359 (1866)
..+.+||.||.....+... ..+..++++..+.++..++|..+..
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 2356788888755443221 2356789999999999999987763
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0025 Score=82.04 Aligned_cols=187 Identities=13% Similarity=0.134 Sum_probs=106.8
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....++||-+..++.|...+..+. -.+.+.++|..|+||||+|+.+++.+-..-.....-+ +.+ ...+++
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC--~~C-------~~C~~i 82 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPC--GEC-------SSCKSI 82 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCC--ccc-------hHHHHH
Confidence 345689999999999999998543 3556889999999999999999986532100000000 000 000000
Q ss_pred HHHHhccccccCcc---chhHHHHHHH--------hhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEcccc-
Q 000202 263 LSKLLNDRNVKNFQ---NISVNFQSKR--------LARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDK- 328 (1866)
Q Consensus 263 l~~~~~~~~~~~~~---~~~~~~l~~~--------L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~- 328 (1866)
... ...+..... +...+.+++. ..+++-++|+|+++ +...++.|+..+....+...+|++|.+.
T Consensus 83 ~~~--~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~ 160 (563)
T PRK06647 83 DND--NSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVH 160 (563)
T ss_pred HcC--CCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChH
Confidence 000 000000000 0011111111 23556688999997 4556778887777656677777666443
Q ss_pred chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 329 QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 329 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.+.... .....+++.+++.++..+.+...+..... .-.++.+..|++.++|.+
T Consensus 161 kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi--~id~eAl~lLa~~s~Gdl 214 (563)
T PRK06647 161 KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI--KYEDEALKWIAYKSTGSV 214 (563)
T ss_pred HhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 332221 22457899999999988888766533221 122455677888888765
|
|
| >PTZ00202 tuzin; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0023 Score=76.24 Aligned_cols=161 Identities=12% Similarity=0.054 Sum_probs=91.2
Q ss_pred cccccchhhHHHHHHHHHhcc---CCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHH
Q 000202 976 NVTAVNYTQRNVRKIFRYVND---VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLR 1052 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 1052 (1866)
...+|.||++++..+...+.+ ...+++.|.|++|+|||||++.+..... ...++.-++ +..++++.|+.
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eElLr~LL~ 331 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDTLRSVVK 331 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHHHHHHHH
Confidence 345688999988888877743 2345889999999999999999864322 123333333 67999999999
Q ss_pred HhccCCCCcc-C-HHHHHHHHHHHh-C-CCcEEEEEeCCCCccchhhhcC---CCCCCCCCcEEEEccCChhhhccCC--
Q 000202 1053 QLSLHCKDRE-T-DAQVAEKLWQVL-N-GEKFLLLLDDVWEQIDLEAVGI---PVPGSENGSKIFMASRELDVCRNMD-- 1123 (1866)
Q Consensus 1053 ~l~~~~~~~~-~-~~~~~~~l~~~L-~-~kr~LlVlDdv~~~~~~~~l~~---~l~~~~~gs~IivTTR~~~v~~~~~-- 1123 (1866)
+|+....... + ...+.+.+.+.- . |++.+||+-= .+...+..+.. .|.....-|.|++----+.+.....
T Consensus 332 ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~l 410 (550)
T PTZ00202 332 ALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLL 410 (550)
T ss_pred HcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccC
Confidence 9997432221 1 123333333322 3 6777777731 11111211111 1222223455665433222211110
Q ss_pred -CCcEEEecCCChHHHHHHHHHH
Q 000202 1124 -VNMVVKLETLSMKDAWELFCKE 1145 (1866)
Q Consensus 1124 -~~~~~~l~~L~~~~a~~Lf~~~ 1145 (1866)
--..|.+..++.++|...-.+.
T Consensus 411 prldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 411 PRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred ccceeEecCCCCHHHHHHHHhhc
Confidence 1146888999999987765543
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0029 Score=82.45 Aligned_cols=191 Identities=14% Similarity=0.095 Sum_probs=105.6
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc-cceEEEEeeccccccccHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF-EGSYFACNVRAAEETGRLDDLRKE 261 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1866)
.....++|.+..++.|..++..+. -...+.++|..|+||||+|+.+++.+-... +.... .. .......+.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~----~~----Cg~C~~C~~ 83 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP----EP----CGKCELCRA 83 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC----CC----CcccHHHHH
Confidence 344679999999999999988643 234678999999999999999999654321 10000 00 000011111
Q ss_pred HHHHHhccc-cccCccchhHHHHHHH--------hhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcccc-c
Q 000202 262 LLSKLLNDR-NVKNFQNISVNFQSKR--------LARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDK-Q 329 (1866)
Q Consensus 262 ll~~~~~~~-~~~~~~~~~~~~l~~~--------L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~ 329 (1866)
+......+- ..........+.+++. ..+++-++|+|+++. .+..+.|+..+........+|++|.+. .
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ 163 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQR 163 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhh
Confidence 111000000 0000000111111111 124556889999984 566777877776555566666555443 3
Q ss_pred hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 330 VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 330 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
+.... .....+++..++.++....+.+.+-.... .-..+.+..|++.++|.+.
T Consensus 164 llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi--~is~~al~~La~~s~G~lr 217 (620)
T PRK14948 164 VLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI--EIEPEALTLVAQRSQGGLR 217 (620)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHH
Confidence 32221 23467888999999888777765532111 1123457788888887653
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0024 Score=78.64 Aligned_cols=153 Identities=20% Similarity=0.279 Sum_probs=90.0
Q ss_pred cCCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccc
Q 000202 184 ESKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEET 252 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (1866)
...++.|.+...+++.+.+.. +-...+-|.++|.+|+|||+||+++++.....| +.....
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f-----i~i~~s---- 213 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF-----IRVVGS---- 213 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE-----EEEehH----
Confidence 445788999999888876531 112356799999999999999999998765443 221111
Q ss_pred ccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-------------H---HHHHHhhccCCC-
Q 000202 253 GRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-------------R---QIELLIGRLDRF- 315 (1866)
Q Consensus 253 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~---~~~~l~~~~~~~- 315 (1866)
.+.....+.. .......+.......+.+|+||+++.. . .+..++..+..+
T Consensus 214 --------~l~~k~~ge~-----~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 214 --------EFVQKYLGEG-----PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred --------HHHHHhcchh-----HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 1111111110 000112222233567899999998632 1 122333333222
Q ss_pred -CCCCEEEEEccccchhcc-----CccceeeecCCCCHHHHHHHHHhhc
Q 000202 316 -ASGSQVIITTRDKQVLTN-----CEVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 316 -~~gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
..+..||+||...+.+.. ...+..++++..+.++..++|..+.
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 235678888876544322 1235678999999999888887665
|
|
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00052 Score=76.27 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=31.2
Q ss_pred cchhhHHHHHHHHHh---ccCCccEEEEEcCCCchHHHHHHHHhcCcccc
Q 000202 980 VNYTQRNVRKIFRYV---NDVTASKIGVYGVGGIGKTAALKALISYPEVK 1026 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l---~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~ 1026 (1866)
|.||+++++++...+ .....+.+.|+|.+|+|||+|.+.++......
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 578999999999988 33456789999999999999999985543333
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.005 Score=75.16 Aligned_cols=177 Identities=13% Similarity=0.049 Sum_probs=97.5
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEe--cCCCCHHHHHHHHHHHhcc
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTV--SRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~ 1056 (1866)
.+.|+++.++.+..++.....+.+.++|..|+||||+|+.+.+.-... .+.. .++.+ +.......+ +..+.++..
T Consensus 18 ~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~-~~~~-~~i~~~~~~~~~~~~~-~~~i~~~~~ 94 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGE-DWRE-NFLELNASDERGIDVI-RNKIKEFAR 94 (319)
T ss_pred HhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC-cccc-ceEEeccccccchHHH-HHHHHHHHh
Confidence 456777788888888877666678999999999999999995532111 1111 12222 222222211 111111110
Q ss_pred CCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCCh-hhhccC-CCCcEEEecC
Q 000202 1057 HCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASREL-DVCRNM-DVNMVVKLET 1132 (1866)
Q Consensus 1057 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~-~~~~~~~l~~ 1132 (1866)
... .-...+-+|++|++... ...+.+...+......+++|+++... .+.... .....+++++
T Consensus 95 ~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~ 160 (319)
T PRK00440 95 TAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSP 160 (319)
T ss_pred cCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCC
Confidence 000 00123568999998753 22334443333333446677666432 221111 1124689999
Q ss_pred CChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1133 LSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1133 L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
++.++....+.+.+...... --.+....+++.++|.+--+
T Consensus 161 l~~~ei~~~l~~~~~~~~~~-i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 161 LKKEAVAERLRYIAENEGIE-ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred CCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 99999888887766432211 11335667888999987543
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0022 Score=80.34 Aligned_cols=130 Identities=12% Similarity=0.184 Sum_probs=75.0
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
...+.|+|..|+|||+||+++++.+......++|+.. ..+...+...+... ..+..++..+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~----------~~f~~~~~~~l~~~---------~~~~f~~~~~ 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS----------ELFTEHLVSAIRSG---------EMQRFRQFYR 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH----------HHHHHHHHHHHhcc---------hHHHHHHHcc
Confidence 4568999999999999999999987654344445431 12222333332111 1122333333
Q ss_pred cCcEEEEEecCCCH----HHHHHHhhccCC-CCCCCEEEEEcccc---------chhccCccceeeecCCCCHHHHHHHH
Q 000202 289 RKKVLIVFDDVNHP----RQIELLIGRLDR-FASGSQVIITTRDK---------QVLTNCEVDHIYQMKELVHADAHKLF 354 (1866)
Q Consensus 289 ~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf 354 (1866)
..-+|++||+... ...+.+...+.. ...|..||+||... .+...+....++++.+++.++-..++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 3457888998642 112222222211 12356788888642 11222233467889999999999888
Q ss_pred Hhhc
Q 000202 355 TQCA 358 (1866)
Q Consensus 355 ~~~a 358 (1866)
.+.+
T Consensus 281 ~~k~ 284 (445)
T PRK12422 281 ERKA 284 (445)
T ss_pred HHHH
Confidence 8766
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0021 Score=72.53 Aligned_cols=179 Identities=16% Similarity=0.177 Sum_probs=109.3
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc--cccceEEEEeeccccccccHHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR--HFEGSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
|.....++|-+..++.|.+.+.. ........+|++|.|||+-|+++++..-. -|++++--.+... ... ..+.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd--erG--isvv 105 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD--ERG--ISVV 105 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc--ccc--ccch
Confidence 44557899999999999988876 35567889999999999999999986533 2444332111111 000 0000
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHh------hcCc-EEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccch
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRL------ARKK-VLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQV 330 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L------~~k~-~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v 330 (1866)
++ ...+. +.+.-.. -.++ =.+|||+++. .+.|.++......+...+|.|+.+-.-..
T Consensus 106 r~------------Kik~f--akl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 106 RE------------KIKNF--AKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred hh------------hhcCH--HHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhh
Confidence 00 00000 0000000 0122 4678999985 66789998888887888887766543322
Q ss_pred hcc-C-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 331 LTN-C-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 331 ~~~-~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
... . ....-|..++|..++..+-+...+-..+. .-..+..+.|++.++|-
T Consensus 172 ii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v--~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 172 IIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGV--DIDDDALKLIAKISDGD 223 (346)
T ss_pred CChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCc
Confidence 211 1 12356789999999998888877743332 22345677888888773
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0051 Score=77.81 Aligned_cols=192 Identities=10% Similarity=0.037 Sum_probs=102.5
Q ss_pred cccccchhhHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcCcccccccce-EEEEEecCCCCHHHHHHHHHHH
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISYPEVKVMFHV-IIWVTVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~ 1053 (1866)
.+..++|.+.-+..+.+.+...+. ..+-++|..|+||||+|+.+++.-.-...... ..+ .++..-.....+...
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~----~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI----KTCEQCTNCISFNNH 94 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc----CCCCCChHHHHHhcC
Confidence 344566666667767666655543 46789999999999999999653211110000 000 000000111111100
Q ss_pred hcc-----CCCCccCHHHHHHHHHH----HhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEE-ccCChhhhcc
Q 000202 1054 LSL-----HCKDRETDAQVAEKLWQ----VLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFM-ASRELDVCRN 1121 (1866)
Q Consensus 1054 l~~-----~~~~~~~~~~~~~~l~~----~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~ 1121 (1866)
... +.......+++...+.. -..+++-++|+|+++. ...++.+...+......+++|+ ||+...+...
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHH
Confidence 000 00011112222221111 1346777899999986 3557777666554445566554 4444444332
Q ss_pred CC-CCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHH
Q 000202 1122 MD-VNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLL 1172 (1866)
Q Consensus 1122 ~~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLA 1172 (1866)
.. ....+++++++.++..+.+.+.+....... -.+....|++.++|.+--
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i-e~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLKT-DIEALRIIAYKSEGSARD 225 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 21 235789999999999999988775332111 123456688899997743
|
|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0043 Score=76.76 Aligned_cols=149 Identities=16% Similarity=0.266 Sum_probs=81.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHh-CC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVL-NG 1077 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~ 1077 (1866)
.+-|.++|++|+|||++|+++++.. ...| +.+.. ..+.... ++ ........+.+.. ..
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l--~~~~-----~~v~~----~~l~~~~---~g-------~~~~~i~~~f~~a~~~ 214 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET--NATF-----IRVVG----SELVRKY---IG-------EGARLVREIFELAKEK 214 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC--CCCE-----Eecch----HHHHHHh---hh-------HHHHHHHHHHHHHHhc
Confidence 3458899999999999999996532 2222 22211 1111110 00 0111122222222 34
Q ss_pred CcEEEEEeCCCCcc----------------chhhhcCCCCC--CCCCcEEEEccCChhh-----hccCCCCcEEEecCCC
Q 000202 1078 EKFLLLLDDVWEQI----------------DLEAVGIPVPG--SENGSKIFMASRELDV-----CRNMDVNMVVKLETLS 1134 (1866)
Q Consensus 1078 kr~LlVlDdv~~~~----------------~~~~l~~~l~~--~~~gs~IivTTR~~~v-----~~~~~~~~~~~l~~L~ 1134 (1866)
...+|+||+++... .+..+...+.. ...+.+||.||+.... .+....+..+.+...+
T Consensus 215 ~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~ 294 (364)
T TIGR01242 215 APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPD 294 (364)
T ss_pred CCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcC
Confidence 66899999987421 11122211211 1235678888875432 2222345689999999
Q ss_pred hHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh
Q 000202 1135 MKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1135 ~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 1170 (1866)
.++..++|..++......++. -...+++.+.|..
T Consensus 295 ~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 295 FEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred HHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 999999999887654322211 1344667777764
|
Many proteins may score above the trusted cutoff because an internal |
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0028 Score=82.40 Aligned_cols=184 Identities=14% Similarity=0.141 Sum_probs=102.8
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc-c-cc-eEEEEeeccccccccHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH-F-EG-SYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~-f-~~-~~~~~~~~~~~~~~~~~~l~ 259 (1866)
....++||.+...+.|...+..+. -.+.+.++|..|+||||+|+.+++.+-.. . .. .|-.+ ...
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c------------~~c 79 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC------------PPC 79 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc------------HHH
Confidence 345689999999999999987542 34567899999999999999999865321 1 00 00000 000
Q ss_pred HHHHHHHhccccccCcc---ch---hHHHHHHH-----hhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcc
Q 000202 260 KELLSKLLNDRNVKNFQ---NI---SVNFQSKR-----LARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTR 326 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~---~~---~~~~l~~~-----L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR 326 (1866)
.++.. +...+....+ +. ....+.+. ...++-++|+|+++. ....+.|+..+....+.+.+|++|.
T Consensus 80 ~~i~~--g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 80 VEITE--GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred HHHhc--CCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeC
Confidence 00000 0000000000 00 00111111 123455788999974 4567777777666556777766554
Q ss_pred c-cchhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 327 D-KQVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 327 ~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
+ ..+.... .....+++++++.++....+...+-.... .-..+....|++.++|..
T Consensus 158 ~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi--~i~~~al~~la~~a~G~l 214 (576)
T PRK14965 158 EPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI--SISDAALALVARKGDGSM 214 (576)
T ss_pred ChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCH
Confidence 3 3343221 22467889999999888777654422111 112455677888887743
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0033 Score=77.76 Aligned_cols=188 Identities=10% Similarity=-0.007 Sum_probs=102.4
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHh
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQL 1054 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 1054 (1866)
.+..++|.+.-+..+.+++...+.. .+.++|..|+||||+|+.+.+.-.-...-... .+....+ .+.+....
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~---pCg~C~s----C~~i~~g~ 88 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNE---PCNECTS----CLEITKGI 88 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcc---ccCCCcH----HHHHHccC
Confidence 3445667777777777888766654 57899999999999999996532111100000 0000011 12222111
Q ss_pred ccCC-----CC---ccCHHHHHHHHHH-HhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCC-hhhhccC
Q 000202 1055 SLHC-----KD---RETDAQVAEKLWQ-VLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRE-LDVCRNM 1122 (1866)
Q Consensus 1055 ~~~~-----~~---~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~ 1122 (1866)
..+. .. ..+..++.+.+.. ...++.-++|+|++.. ...++.+...+........+|.+|.+ ..+....
T Consensus 89 ~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 89 SSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred CccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 1110 00 1111222222221 1245667899999986 45577776655433334555544443 4442221
Q ss_pred C-CCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1123 D-VNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1123 ~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
. -...|.+++++.++..+.+.+.+......- -.+....|++.++|.+-
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~-e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY-DQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCChHH
Confidence 1 135799999999988888877654321111 13456779999999884
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.005 Score=77.59 Aligned_cols=184 Identities=13% Similarity=0.081 Sum_probs=98.3
Q ss_pred ccccchhhHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcCccccc--c-----------------cceEEEEE
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISYPEVKV--M-----------------FHVIIWVT 1036 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~-----------------F~~~~wv~ 1036 (1866)
+..++|.+.-+..+.+.+...+. ..+-++|++|+||||+|+.+.+.-.-.. . +.....+.
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 34466666666666676766655 3578999999999999999954211100 0 00112222
Q ss_pred ecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccC
Q 000202 1037 VSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASR 1114 (1866)
Q Consensus 1037 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR 1114 (1866)
.+...++..+ +.|...+.. ....+++-++|+|++.. ....+.+...+........+|++|.
T Consensus 93 aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilatt 155 (472)
T PRK14962 93 AASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATT 155 (472)
T ss_pred CcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeC
Confidence 2211112111 111111100 01235667999999975 3345555554443233344444444
Q ss_pred C-hhhhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCC-ChHHHHHHHH
Q 000202 1115 E-LDVCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCG-LPLLTIVTAK 1178 (1866)
Q Consensus 1115 ~-~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~G-lPLAi~~~g~ 1178 (1866)
+ ..+.... .....+++++++.++....+.+.+...... --.+....|++.++| ++.|+..+-.
T Consensus 156 n~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~-i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 156 NLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE-IDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred ChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3 3332221 123588999999999888888766422111 113345668887765 4566655544
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=6.5e-05 Score=83.10 Aligned_cols=140 Identities=18% Similarity=0.205 Sum_probs=93.9
Q ss_pred ccCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCcc-Cccccchhhh
Q 000202 1661 MSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRH-LEYVFTCSMI 1739 (1866)
Q Consensus 1661 l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~-L~~l~~~~~l 1739 (1866)
-.+|+.|+|+.|++++.-.... ....+..|..|+++.|.-....-. ..-...-++|..|+|++|.+ |..--.....
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~l--l~~scs~L~~LNlsWc~l~~~~Vt-v~V~hise~l~~LNlsG~rrnl~~sh~~tL~ 309 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQL--LLSSCSRLDELNLSWCFLFTEKVT-VAVAHISETLTQLNLSGYRRNLQKSHLSTLV 309 (419)
T ss_pred cccceeeccccccccchhHHHH--HHHhhhhHhhcCchHhhccchhhh-HHHhhhchhhhhhhhhhhHhhhhhhHHHHHH
Confidence 3588999999998887654321 334578889999987754333211 11112347899999999964 2221112345
Q ss_pred hhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCccccc---cccCCCCCccEEEEEcCccc
Q 000202 1740 QFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELAN---IWRNDWPSLEYISFYGCPKL 1809 (1866)
Q Consensus 1740 ~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~---i~~~~lpsLe~L~I~~Cp~L 1809 (1866)
..+|+|.+|++++|..++.-. ...+..|+.|++|.++.|..+-. +-.+..|+|.+|++.||-.=
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~------~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDC------FQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred HhCCceeeeccccccccCchH------HHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 679999999999997775411 12245899999999999986631 12246799999999998543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00045 Score=55.67 Aligned_cols=35 Identities=37% Similarity=0.517 Sum_probs=21.1
Q ss_pred CCcEEEccCCCCCCCChhhcCCCCCcEEecccccC
Q 000202 1423 SLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDF 1457 (1866)
Q Consensus 1423 ~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~ 1457 (1866)
+|++|++++|.|+.+|+.+++|++|++|++++|.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 56666666666666666666666666666666653
|
... |
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0091 Score=65.76 Aligned_cols=170 Identities=16% Similarity=0.158 Sum_probs=81.4
Q ss_pred CcccccchhhHHHHHH---HHHh--ccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHH
Q 000202 975 SNVTAVNYTQRNVRKI---FRYV--NDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQ 1049 (1866)
Q Consensus 975 ~~~~~~~~~~~~~~~i---~~~l--~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 1049 (1866)
..+.+|+|.++-++.+ ++.. .......+-.||++|+||||||..+.+ .....|. +.+.+.-....++ ..
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~i~k~~dl-~~ 94 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPAIEKAGDL-AA 94 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC--SCHHH-HH
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchhhhhHHHH-HH
Confidence 3445677776654443 2222 234466788999999999999999954 3333332 2222110011111 11
Q ss_pred HHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCC--------CCCC-----------CCcE
Q 000202 1050 VLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPV--------PGSE-----------NGSK 1108 (1866)
Q Consensus 1050 i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l--------~~~~-----------~gs~ 1108 (1866)
++..+ +++-+|.+|.+..- .+-+.+..++ .+.+ +=+-
T Consensus 95 il~~l----------------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 95 ILTNL----------------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp HHHT------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred HHHhc----------------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 11111 13345666666541 1111111100 0111 1123
Q ss_pred EEEccCChhhhccCCC--CcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1109 IFMASRELDVCRNMDV--NMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1109 IivTTR~~~v~~~~~~--~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
|=.|||...+...... ..+.+++..+.+|-.++..+.+.-.. -+-.++.+.+|+++|.|-|--+
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~-i~i~~~~~~~Ia~rsrGtPRiA 218 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN-IEIDEDAAEEIARRSRGTPRIA 218 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHhcCCChHHH
Confidence 4458887655443332 34668999999999999887664322 1223567889999999999543
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0048 Score=79.72 Aligned_cols=193 Identities=9% Similarity=0.048 Sum_probs=104.2
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHh
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQL 1054 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 1054 (1866)
.+.+++|.+.-++.+.+.+...+.. .+-++|..|+||||+|+.+.+.-.-...+ ...++..-...+.|...-
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C~~i~~g~ 86 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNCREIEQGR 86 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHHHHHHcCC
Confidence 3445677777778888888766654 35789999999999999985421111000 001111112222222110
Q ss_pred cc-----CCCCccCHH---HHHHHHHH-HhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCC-hhhhccC
Q 000202 1055 SL-----HCKDRETDA---QVAEKLWQ-VLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRE-LDVCRNM 1122 (1866)
Q Consensus 1055 ~~-----~~~~~~~~~---~~~~~l~~-~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~ 1122 (1866)
.. +.......+ ++.+.+.. -..+++-++|||++.. ....+.+...+.......++|.+|.+ ..+....
T Consensus 87 ~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 87 FVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHH
Confidence 00 000001112 22222111 1356777999999985 34566665544433344555554444 4443221
Q ss_pred -CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000202 1123 -DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1123 -~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
.-...|++++|+.++....+.+.+....... -......|++.++|.+--+..+
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~-e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQIPF-EPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 1136899999999999988887653221111 1234567889999988644333
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0001 Score=92.85 Aligned_cols=118 Identities=26% Similarity=0.272 Sum_probs=58.4
Q ss_pred cEEEccCCCCCC-CCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEeccccc
Q 000202 1378 KMIFFMDNDLQT-LPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCD 1456 (1866)
Q Consensus 1378 ~~l~l~~~~l~~-l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~ 1456 (1866)
+.+.+..|.+.. ...+..+++|..|++.+| .+..+...+ ..+.+|++|+|++|.|+.+. .+..|..|+.|++++|.
T Consensus 75 ~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l-~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 75 KELNLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENLL-SSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL 151 (414)
T ss_pred Hhhccchhhhhhhhcccccccceeeeecccc-chhhcccch-hhhhcchheecccccccccc-chhhccchhhheeccCc
Confidence 333344444444 222445555555655554 333333321 44556666666666655543 24445556666666665
Q ss_pred CcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccc
Q 000202 1457 FLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVF 1500 (1866)
Q Consensus 1457 ~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~ 1500 (1866)
+. .+ ..+..+.+|+.+++++|.+..++.. ...+.+|+.+.+.
T Consensus 152 i~-~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 152 IS-DI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLG 194 (414)
T ss_pred ch-hc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhcc
Confidence 32 22 2344455666666666665555432 3455555555443
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00044 Score=55.73 Aligned_cols=40 Identities=35% Similarity=0.463 Sum_probs=32.0
Q ss_pred CCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCC
Q 000202 1445 KCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLP 1485 (1866)
Q Consensus 1445 ~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp 1485 (1866)
++|++|+|++|.+ ..+|..+++|++|++|++++|.|+.+|
T Consensus 1 ~~L~~L~l~~N~i-~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQI-TDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCC-cccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4789999999985 467877899999999999999888765
|
... |
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.012 Score=69.73 Aligned_cols=128 Identities=13% Similarity=0.187 Sum_probs=72.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhc-cc-cceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISR-HF-EGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~-~f-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
.+.++|.+|+||||+|+.+++.... .+ ...-|+..... . +.....+... ......+.+
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~--------~----l~~~~~g~~~-----~~~~~~l~~--- 120 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD--------D----LVGQYIGHTA-----PKTKEVLKK--- 120 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH--------H----HHHHHhccch-----HHHHHHHHH---
Confidence 4789999999999999999885432 11 11123332211 1 2222211111 000112221
Q ss_pred cCcEEEEEecCCC-----------HHHHHHHhhccCCCCCCCEEEEEccccchhccC--------ccceeeecCCCCHHH
Q 000202 289 RKKVLIVFDDVNH-----------PRQIELLIGRLDRFASGSQVIITTRDKQVLTNC--------EVDHIYQMKELVHAD 349 (1866)
Q Consensus 289 ~k~~LlVlDdv~~-----------~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~--------~~~~~~~l~~L~~~e 349 (1866)
-..-+|+||+++. .+..+.+...+.....+.+||+++....+.... .....+++++++.+|
T Consensus 121 a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 121 AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 1235889999963 334555665555545566777777543321100 124578999999999
Q ss_pred HHHHHHhhc
Q 000202 350 AHKLFTQCA 358 (1866)
Q Consensus 350 a~~Lf~~~a 358 (1866)
-.+++...+
T Consensus 201 l~~I~~~~l 209 (287)
T CHL00181 201 LLQIAKIML 209 (287)
T ss_pred HHHHHHHHH
Confidence 999988766
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0042 Score=78.99 Aligned_cols=131 Identities=14% Similarity=0.239 Sum_probs=76.4
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhcccc--ceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHH
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFE--GSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKR 286 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~ 286 (1866)
...+.|+|..|+|||.|+.++++.....+. .++|+. ...+..++...+... ....+++.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~~---------~~~~f~~~ 374 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRDG---------KGDSFRRR 374 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHhc---------cHHHHHHH
Confidence 345899999999999999999998765442 234443 112333333322111 11223334
Q ss_pred hhcCcEEEEEecCCCH---HHH-HHHhhccCC-CCCCCEEEEEcccc---------chhccCccceeeecCCCCHHHHHH
Q 000202 287 LARKKVLIVFDDVNHP---RQI-ELLIGRLDR-FASGSQVIITTRDK---------QVLTNCEVDHIYQMKELVHADAHK 352 (1866)
Q Consensus 287 L~~k~~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~ 352 (1866)
+++- =+|||||+... +.+ +.|...+.. ...|..|||||+.. .+...+...-+++++..+.+.-.+
T Consensus 375 y~~~-DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~a 453 (617)
T PRK14086 375 YREM-DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIA 453 (617)
T ss_pred hhcC-CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHH
Confidence 4433 47888999632 111 222222211 13366799998753 122233345678999999999999
Q ss_pred HHHhhcC
Q 000202 353 LFTQCAF 359 (1866)
Q Consensus 353 Lf~~~a~ 359 (1866)
++.+++-
T Consensus 454 IL~kka~ 460 (617)
T PRK14086 454 ILRKKAV 460 (617)
T ss_pred HHHHHHH
Confidence 9987773
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0052 Score=68.33 Aligned_cols=88 Identities=13% Similarity=0.151 Sum_probs=57.9
Q ss_pred CCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCCh-hhhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCC
Q 000202 1077 GEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASREL-DVCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQS 1152 (1866)
Q Consensus 1077 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 1152 (1866)
+.+-++|+|++... ...+.+...+......+.+|++|++. .+.... .....+++.+++.++..+.+.+. + . .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g-i--~ 170 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G-I--S 170 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C-C--C
Confidence 55668999998753 34555655554444556677666643 222211 12358999999999998888776 2 1 1
Q ss_pred chHHHHHHHHHHHcCCChH
Q 000202 1153 PDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1153 ~~~~~~~~~I~~~c~GlPL 1171 (1866)
.+.+..|++.++|.|.
T Consensus 171 ---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 171 ---EEAAELLLALAGGSPG 186 (188)
T ss_pred ---HHHHHHHHHHcCCCcc
Confidence 3457789999999884
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0031 Score=86.05 Aligned_cols=170 Identities=15% Similarity=0.173 Sum_probs=92.7
Q ss_pred hhhhhhHHHHhhcccccccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc-----c-
Q 000202 164 RLVADIANEVLERLDDTFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH-----F- 237 (1866)
Q Consensus 164 ~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~-----f- 237 (1866)
..+++...++.+.-.. ....+.+||+.+++.+.+.|.... ..-+.++|.+|+|||++|..++.++... .
T Consensus 160 ~~l~~~~~~l~~~a~~---~~~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~ 234 (821)
T CHL00095 160 PTLEEFGTNLTKEAID---GNLDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILE 234 (821)
T ss_pred hHHHHHHHHHHHHHHc---CCCCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhc
Confidence 3556666665554221 234569999999999999997543 2235799999999999999999976532 1
Q ss_pred cceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------HHHHH
Q 000202 238 EGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------RQIEL 307 (1866)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------~~~~~ 307 (1866)
...+|..+... +. .+.....+........+.+....++++|++|+++.. +.-+.
T Consensus 235 ~~~i~~l~~~~---------l~-------ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~l 298 (821)
T CHL00095 235 DKLVITLDIGL---------LL-------AGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANI 298 (821)
T ss_pred CCeEEEeeHHH---------Hh-------ccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHH
Confidence 12344322211 10 000000001111112222222456899999999521 11222
Q ss_pred HhhccCCCCCCCEEEEEccccchhcc------C-ccceeeecCCCCHHHHHHHHHh
Q 000202 308 LIGRLDRFASGSQVIITTRDKQVLTN------C-EVDHIYQMKELVHADAHKLFTQ 356 (1866)
Q Consensus 308 l~~~~~~~~~gs~IiiTTR~~~v~~~------~-~~~~~~~l~~L~~~ea~~Lf~~ 356 (1866)
+.+.+.. ..-++|.+|.....-.. . ....+++++..+.++...++..
T Consensus 299 Lkp~l~r--g~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 299 LKPALAR--GELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred hHHHHhC--CCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 3333221 22455655554432110 0 1235678888888888877764
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0051 Score=83.73 Aligned_cols=66 Identities=20% Similarity=0.300 Sum_probs=49.0
Q ss_pred hhhhhHHHHhhcccccccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 165 LVADIANEVLERLDDTFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 165 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
.+.+...++..+... ...+.+|||+.++..+...|.... ..-+.++|.+|+|||+||+.++.++..
T Consensus 160 ~l~~~~~~l~~~~r~---~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 160 ALKKYTIDLTERAEQ---GKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHhhhHHHHHhc---CCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 455555555544332 345679999999999999887543 234669999999999999999998754
|
|
| >PF14516 AAA_35: AAA-like domain | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.011 Score=71.68 Aligned_cols=204 Identities=9% Similarity=0.152 Sum_probs=114.9
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc-cccceEEEEeeccccc--cccHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR-HFEGSYFACNVRAAEE--TGRLDDL 258 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~--~~~~~~l 258 (1866)
+...+..|+|...-+++.+.+... -..+.|.|.-.+|||+|..++.++... .|. ++++... .... .......
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~-~v~id~~-~~~~~~~~~~~~f 81 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYR-CVYIDLQ-QLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCE-EEEEEee-cCCCcccCCHHHH
Confidence 345567889996666666666542 237899999999999999999987654 343 3344332 2211 1233444
Q ss_pred HHHHHHHHhcccccc---------Cccc--hhHHHHHHHh---hcCcEEEEEecCCCHH----HHHHHhhccC-CC----
Q 000202 259 RKELLSKLLNDRNVK---------NFQN--ISVNFQSKRL---ARKKVLIVFDDVNHPR----QIELLIGRLD-RF---- 315 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~---------~~~~--~~~~~l~~~L---~~k~~LlVlDdv~~~~----~~~~l~~~~~-~~---- 315 (1866)
++.++..+...-... .... .....+.+.+ .+++++|+||+|+..- ..+.+...+. |.
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 444443333222100 0111 1113344432 2589999999997421 1122222111 10
Q ss_pred --CC-CCEEEEEcccc--chhcc-----CccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce
Q 000202 316 --AS-GSQVIITTRDK--QVLTN-----CEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 316 --~~-gs~IiiTTR~~--~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
.. ..-.+|...+. ..... .+....+++++++.+|...|..++-.. .. ....++|...+||+|--
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~~---~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---FS---QEQLEQLMDWTGGHPYL 235 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---CC---HHHHHHHHHHHCCCHHH
Confidence 01 11122222111 11111 133457899999999999999876522 11 22288999999999999
Q ss_pred eeeecccccCC
Q 000202 386 LKVLGCYLCGR 396 (1866)
Q Consensus 386 l~~~g~~L~~~ 396 (1866)
+..++..+...
T Consensus 236 v~~~~~~l~~~ 246 (331)
T PF14516_consen 236 VQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHc
Confidence 98888888653
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00017 Score=82.34 Aligned_cols=204 Identities=20% Similarity=0.179 Sum_probs=134.1
Q ss_pred cccchhhHHHHhcccCCCCCCCCccccccCcEEEccCCCCC--CCCC----CCCCCcccEEEccCCcCCcccChhH----
Q 000202 1348 RLFIPEAYQFLLGARAGLTEPPSEEEWTHAKMIFFMDNDLQ--TLPG----RPSCPNLLTLFLQRNCRLRVIPPSF---- 1417 (1866)
Q Consensus 1348 r~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~--~l~~----~~~~~~L~~L~L~~~~~l~~~p~~~---- 1417 (1866)
+..+|+.+.++... ....++|+.++|++|.+. .++. +.+|..|+.|.|.+| .++...-..
T Consensus 74 ~~Ei~e~L~~l~~a---------L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~a 143 (382)
T KOG1909|consen 74 KDEIPEALKMLSKA---------LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRA 143 (382)
T ss_pred HHHHHHHHHHHHHH---------HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHH
Confidence 34567766665443 223457899999999886 2333 357999999999866 454432222
Q ss_pred ---------HhcCCCCcEEEccCCCCCCCC-----hhhcCCCCCcEEecccccCccc----CCccccCCCCCcEEEccCC
Q 000202 1418 ---------FELMTSLKVLNLSKTRIKSLP-----ETLVNLKCLQILILRDCDFLFV----LPPEVGSLECLEVLDLRGT 1479 (1866)
Q Consensus 1418 ---------~~~l~~L~~L~Ls~~~i~~lp-----~~i~~L~~L~~L~L~~~~~~~~----lP~~i~~L~~L~~L~l~~~ 1479 (1866)
.+.-+.||++...+|++..-+ ..+...+.|+.+.+..|.+-.. +-..+..+++|+.|||+.|
T Consensus 144 l~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN 223 (382)
T KOG1909|consen 144 LFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN 223 (382)
T ss_pred HHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc
Confidence 134578999999999987554 4566778999999998875321 2235678999999999999
Q ss_pred CCC-----cCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCCCCccccccccccccc
Q 000202 1480 EIK-----MLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEV 1554 (1866)
Q Consensus 1480 ~i~-----~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l 1554 (1866)
-++ .+-..+..+++|+.|++++|---. .....+ ..-.-...++|+.|.+.+|.... ....++...+
T Consensus 224 tft~egs~~LakaL~s~~~L~El~l~dcll~~-~Ga~a~-----~~al~~~~p~L~vl~l~gNeIt~---da~~~la~~~ 294 (382)
T KOG1909|consen 224 TFTLEGSVALAKALSSWPHLRELNLGDCLLEN-EGAIAF-----VDALKESAPSLEVLELAGNEITR---DAALALAACM 294 (382)
T ss_pred hhhhHHHHHHHHHhcccchheeeccccccccc-ccHHHH-----HHHHhccCCCCceeccCcchhHH---HHHHHHHHHH
Confidence 877 344557788899999998874211 110000 00012236788888887654331 1112233344
Q ss_pred cCCCCCCEEEeecCCc
Q 000202 1555 SGLTKLSSLSFHFPEI 1570 (1866)
Q Consensus 1555 ~~l~~L~~L~l~~~~l 1570 (1866)
...+.|.+|+++.|.+
T Consensus 295 ~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 295 AEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcchhhHHhcCCcccc
Confidence 5588999999999987
|
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.012 Score=70.50 Aligned_cols=243 Identities=14% Similarity=0.112 Sum_probs=130.8
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc---------------cccceEEEEeecccc
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR---------------HFEGSYFACNVRAAE 250 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~---------------~f~~~~~~~~~~~~~ 250 (1866)
.+++|-+...+.+...+..+. -.....++|..|+||+++|.++++.+-. .++...|+.-....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 468899999999999987642 2467899999999999999999985422 23333444321000
Q ss_pred ccccHHHHHHHHHHHHh-ccccccCccchhHHHHHHHh-----hcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEE
Q 000202 251 ETGRLDDLRKELLSKLL-NDRNVKNFQNISVNFQSKRL-----ARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVI 322 (1866)
Q Consensus 251 ~~~~~~~l~~~ll~~~~-~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Ii 322 (1866)
..... -........ .......+.-.....+.+.+ .+++-++|+|+++. ....++++..+...+ .+.+|
T Consensus 82 ~g~~~---~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 82 QGKLI---TASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred ccccc---chhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 00000 000000000 00000001000112232332 34567889999974 556667777666545 45666
Q ss_pred EEcccc-chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecccccCCCHHH
Q 000202 323 ITTRDK-QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEE 400 (1866)
Q Consensus 323 iTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~~~~~ 400 (1866)
++|.+. .++... .....+++.+++.++..+.+....... .. ......++..++|.|.....+-.... +.
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~--~~---~~~~~~l~~~a~Gs~~~al~~l~~~~----~~ 228 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE--IL---NINFPELLALAQGSPGAAIANIEQLQ----SI 228 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc--cc---hhHHHHHHHHcCCCHHHHHHHHHHHH----HH
Confidence 555444 333322 235789999999999999998764211 11 11135788999999965443222111 10
Q ss_pred HHHHHHHhccCCCchhhhhhhcc--cC-CCCh-hhHHHHHHHHHHhHH
Q 000202 401 WESAMRKLEIVPHMEIQEVLKIS--YD-SLDD-SQKRMHDLLRAMGRE 444 (1866)
Q Consensus 401 w~~~l~~l~~~~~~~i~~~l~~S--y~-~L~~-~~k~~~~~l~~~~~~ 444 (1866)
-...+..+...+ .+...++.++ +. .++. .++.+++|++.+-++
T Consensus 229 ~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~e~Q~~~l~~~~~~~~~ 275 (314)
T PRK07399 229 PPELLQKLEQPP-KSPLEALELAKDISEELDIEQQLWLIDYLQQHYWQ 275 (314)
T ss_pred HHHHHHHHHhcc-cCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 112222232222 2344444443 22 4554 345888899866555
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0048 Score=76.95 Aligned_cols=195 Identities=10% Similarity=0.044 Sum_probs=102.4
Q ss_pred ccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEE-EecCCCCHHHHHHHHHHHh
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWV-TVSRYWNTRKIQKQVLRQL 1054 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv-~vs~~~~~~~~~~~i~~~l 1054 (1866)
+.+++|.+.-++.+.+++...+++ .+-++|+.|+||||+|+.+.+.-.-........|. .+..++..-...+.+....
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 345667777777777777766665 47799999999999999985422111101000000 0011111111222221111
Q ss_pred ccC-----CCCccCHHHHHHHHHHHh-----CCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEcc-CChhhhcc
Q 000202 1055 SLH-----CKDRETDAQVAEKLWQVL-----NGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMAS-RELDVCRN 1121 (1866)
Q Consensus 1055 ~~~-----~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~ 1121 (1866)
..+ .......+++.+ +.+.+ .+.+-++|+|++... ..++.+...+......+.+|++| +...+...
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 000 001111222222 22222 345668899999753 45666666555444566666555 33333322
Q ss_pred CC-CCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1122 MD-VNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1122 ~~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
.. ....+++++++.++..+.+...+..... .--.+.+..|++.++|.+--+
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEGI-SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 11 1246889999999988877766532111 112345677899999977533
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0075 Score=76.95 Aligned_cols=180 Identities=12% Similarity=0.058 Sum_probs=99.6
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccc-------------------cccceEEEE
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVK-------------------VMFHVIIWV 1035 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~-------------------~~F~~~~wv 1035 (1866)
.+.+++|.+.-++.+.+++...+.. .+-++|+.|+||||+|+.+...-.-. +.|..++.+
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 3445677777888888888766655 46799999999999999885421111 111122222
Q ss_pred EecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEcc
Q 000202 1036 TVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMAS 1113 (1866)
Q Consensus 1036 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTT 1113 (1866)
..+....+.++ +++++.+.. .-..++.-++|+|++.. ....+.+...+.......++|++|
T Consensus 94 daas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 94 DAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred cccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 22222222221 122221111 01235667889999986 345555555554434456666655
Q ss_pred CCh-hhhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1114 REL-DVCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1114 R~~-~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
.+. .+.... .-...+++++++.++....+.+.+....... -.+....|++.++|.+--+
T Consensus 157 td~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~-~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 157 TDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF-ENAALDLLARAANGSVRDA 217 (509)
T ss_pred CChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHH
Confidence 443 332111 1125688999998887766655543221111 1233556888888877433
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.011 Score=68.17 Aligned_cols=193 Identities=15% Similarity=0.117 Sum_probs=106.2
Q ss_pred CCceeehh---hHHHHHHhhhcCC-CCcEEEEEEecCCCchhHHHHHHHHhhhccccc------eEEEEeeccccccccH
Q 000202 186 KDLIGVEW---RIKEIESLLRTGS-AGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEG------SYFACNVRAAEETGRL 255 (1866)
Q Consensus 186 ~~~vGr~~---~l~~l~~~L~~~~-~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~------~~~~~~~~~~~~~~~~ 255 (1866)
+.+||-.. .++.|+++|.... ....-+.|+|.+|+|||++++++.+.+...++. ++.+. .....+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCCh
Confidence 34566433 4566777776543 234558999999999999999999866555532 12222 2234555
Q ss_pred HHHHHHHHHHHhccccccCccchhHHHHHHHhhc-CcEEEEEecCCCH-----HHHHHHhhc---cCCCCCCCEEEEEcc
Q 000202 256 DDLRKELLSKLLNDRNVKNFQNISVNFQSKRLAR-KKVLIVFDDVNHP-----RQIELLIGR---LDRFASGSQVIITTR 326 (1866)
Q Consensus 256 ~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~~-----~~~~~l~~~---~~~~~~gs~IiiTTR 326 (1866)
..+...++..+..................+.++. +-=+||+|.+.+. .+-..++.. +.+-..=+-|.|-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 7888888888876553222111112334455554 4458899999762 122222222 222222345666665
Q ss_pred ccchhccC-----ccceeeecCCCCHHHHH-HHHHhhc--C--CCCCCChhHHHHHHHHHHHhCCCc
Q 000202 327 DKQVLTNC-----EVDHIYQMKELVHADAH-KLFTQCA--F--RGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 327 ~~~v~~~~-----~~~~~~~l~~L~~~ea~-~Lf~~~a--~--~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
+.--+-.. +...++.++....++-+ .|+.... + +... .-...+++..|...++|+.
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S-~l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPS-NLASPELARRIHERSEGLI 255 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHcCCch
Confidence 44222111 11345677776666544 3332211 1 1111 1234678899999999964
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0091 Score=73.49 Aligned_cols=93 Identities=16% Similarity=0.080 Sum_probs=58.3
Q ss_pred CCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCCh-hhhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCC
Q 000202 1077 GEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASREL-DVCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQS 1152 (1866)
Q Consensus 1077 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 1152 (1866)
+++-++++|++..- ...+.+...+.....+..+|++|.+. .+.... .-...+.+++++.++..+.+.+..+. .
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---~ 192 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---D 192 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC---C
Confidence 45568888999853 33444544444334456666666553 333221 12368999999999998888754321 1
Q ss_pred chHHHHHHHHHHHcCCChHHHHH
Q 000202 1153 PDIHLYARAIVKGCCGLPLLTIV 1175 (1866)
Q Consensus 1153 ~~~~~~~~~I~~~c~GlPLAi~~ 1175 (1866)
.+.+..++..++|.|.....
T Consensus 193 ---~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 193 ---PETARRAARASQGHIGRARR 212 (394)
T ss_pred ---HHHHHHHHHHcCCCHHHHHH
Confidence 34467789999999965443
|
|
| >COG3899 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.014 Score=79.16 Aligned_cols=302 Identities=13% Similarity=0.165 Sum_probs=162.3
Q ss_pred chhhHHHHHHHHHh---ccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEE---EEEecCCC---CHHHHHHHHH
Q 000202 981 NYTQRNVRKIFRYV---NDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVII---WVTVSRYW---NTRKIQKQVL 1051 (1866)
Q Consensus 981 ~~~~~~~~~i~~~l---~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~---wv~vs~~~---~~~~~~~~i~ 1051 (1866)
.||+.+++.+...+ ......++.+.|..|+|||+|++.|. ..+.+.+...+ +-...+.. ......++++
T Consensus 3 ~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~--~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 3 YGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVH--KPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHH--HHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 46777888887777 34556699999999999999999994 33333222111 11122221 2334445555
Q ss_pred HHhccCCC--------------------------------C---------ccCHHH-----HHHHHHHHh-CCCcEEEEE
Q 000202 1052 RQLSLHCK--------------------------------D---------RETDAQ-----VAEKLWQVL-NGEKFLLLL 1084 (1866)
Q Consensus 1052 ~~l~~~~~--------------------------------~---------~~~~~~-----~~~~l~~~L-~~kr~LlVl 1084 (1866)
.++..... . ...... ....+.... +.++..+|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 54421110 0 000011 112222233 456999999
Q ss_pred eCCCC--ccchh---hhcCCCCC-CCCCcEEEEc--cCCh--hhhccCCCCcEEEecCCChHHHHHHHHHHhcCCCCCch
Q 000202 1085 DDVWE--QIDLE---AVGIPVPG-SENGSKIFMA--SREL--DVCRNMDVNMVVKLETLSMKDAWELFCKEVGGIIQSPD 1154 (1866)
Q Consensus 1085 Ddv~~--~~~~~---~l~~~l~~-~~~gs~IivT--TR~~--~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~ 1154 (1866)
||+.- ...++ .+...... ......|..+ .+.. .+-........+.|+||+..+.-.|.....+.... .
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~--~ 238 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL--L 238 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc--c
Confidence 99952 11122 22111110 0001122222 2221 11222233468999999999999999887765322 2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhCC------CCHHHHHHHhhhCCCCccccccchhhHHHHHHHhHhccCCcchhH
Q 000202 1155 IHLYARAIVKGCCGLPLLTIVTAKALAGE------RNVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQLKDHDVKS 1228 (1866)
Q Consensus 1155 ~~~~~~~I~~~c~GlPLAi~~~g~~L~~~------~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~lk~ 1228 (1866)
..+....|.+|-.|.|+-+.-+-..+... .+...|+.-...... ....+.+...+..-.+.||+. .++
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~~~~vv~~l~~rl~kL~~~-t~~ 312 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LATTDAVVEFLAARLQKLPGT-TRE 312 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chhhHHHHHHHHHHHhcCCHH-HHH
Confidence 34557779999999999999988888752 233334332222111 111233566688889999987 788
Q ss_pred HHHhhcCCCCCccccHHHHHHHHHHcCccchhhHhHHHhHHHHHHHHHHhhhhhccc-----c-cC---cccchhHHHHH
Q 000202 1229 CFLHCSLFPEDREVSIVEFIDYCIQEGIIVGTLANAHKRGHQIVDVLVDASLLLINE-----V-HN---SIRMPGLMKDL 1299 (1866)
Q Consensus 1229 cfly~s~Fp~~~~i~~~~Li~~W~aeG~i~~~~~~~~~~~~~~~~~L~~~sll~~~~-----~-~~---~~~mhdlv~dl 1299 (1866)
..-..|++-.. |+..-|--.+-. .....+....+.|....++..++ . .. .--.|+.+++.
T Consensus 313 Vl~~AA~iG~~--F~l~~La~l~~~---------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqa 381 (849)
T COG3899 313 VLKAAACIGNR--FDLDTLAALAED---------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQA 381 (849)
T ss_pred HHHHHHHhCcc--CCHHHHHHHHhh---------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHH
Confidence 88888887543 334433332211 12344555555555554443221 0 11 11468888887
Q ss_pred HHHH
Q 000202 1300 AFGI 1303 (1866)
Q Consensus 1300 a~~i 1303 (1866)
|...
T Consensus 382 aY~~ 385 (849)
T COG3899 382 AYNL 385 (849)
T ss_pred Hhcc
Confidence 7543
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0039 Score=78.53 Aligned_cols=166 Identities=17% Similarity=0.152 Sum_probs=98.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCc
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEK 1079 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 1079 (1866)
..+.|+|..|+|||+|++++.+.-.....-..+++++ ..++...+...+.... ...+.+++.++. .
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~~-~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEICQ-N 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhcc-C
Confidence 4588999999999999999966322211112334444 3456677666654210 112334444443 3
Q ss_pred EEEEEeCCCCc---cch-hhhcCCCCC-CCCCcEEEEccCCh---------hhhccCCCCcEEEecCCChHHHHHHHHHH
Q 000202 1080 FLLLLDDVWEQ---IDL-EAVGIPVPG-SENGSKIFMASREL---------DVCRNMDVNMVVKLETLSMKDAWELFCKE 1145 (1866)
Q Consensus 1080 ~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 1145 (1866)
-+||+||+... ..+ +.+...+.. ...|..||+|+... .+..++....++.+++++.++-.+++.++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 47889999753 222 222221111 12455688886543 22334445568899999999999999988
Q ss_pred hcCCCC-CchHHHHHHHHHHHcCCChHHHHHHHHH
Q 000202 1146 VGGIIQ-SPDIHLYARAIVKGCCGLPLLTIVTAKA 1179 (1866)
Q Consensus 1146 ~~~~~~-~~~~~~~~~~I~~~c~GlPLAi~~~g~~ 1179 (1866)
+..... ..--++...-|+..++|.|-.+.-+...
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 753211 1122456778999999999776655443
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0049 Score=80.33 Aligned_cols=153 Identities=17% Similarity=0.210 Sum_probs=88.1
Q ss_pred CCCceeehhhHHHHHHhhh---c-------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 185 SKDLIGVEWRIKEIESLLR---T-------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~---~-------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
..+++|.+...+++.+.+. . +....+-|.++|.+|+|||+||++++...... |+.....
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~is~s------ 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFSISGS------ 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eeeccHH------
Confidence 3568888887777666543 1 11224568999999999999999999865322 2221111
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccCCC--C
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLDRF--A 316 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~ 316 (1866)
.+.... .+. ........+.+.....+++|+||+++.. ..+..++..+..+ .
T Consensus 251 --~f~~~~----~g~-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 --EFVEMF----VGV-----GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred --HHHHHh----hhh-----hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 011100 000 0001112334445667899999999632 1234444333322 2
Q ss_pred CCCEEEEEccccchhcc-----CccceeeecCCCCHHHHHHHHHhhcC
Q 000202 317 SGSQVIITTRDKQVLTN-----CEVDHIYQMKELVHADAHKLFTQCAF 359 (1866)
Q Consensus 317 ~gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~ 359 (1866)
.+..||.||.....+.. ...+..+.++..+.++-.++++.++-
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~ 367 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHAR 367 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHh
Confidence 35566777765443321 12246788999999999999987763
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0034 Score=73.49 Aligned_cols=101 Identities=24% Similarity=0.332 Sum_probs=55.9
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLAR 289 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~ 289 (1866)
..+.++|.+|+|||.||.++++.+..+...++|+. ...++..+........ ......+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~~------~~~~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSSG------KEDENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhccc------cccHHHHHHHhcC
Confidence 45889999999999999999998766533344443 1223333332221111 1112223344554
Q ss_pred CcEEEEEecCC--CHHH--HHHHhhccC-CCCCCCEEEEEccc
Q 000202 290 KKVLIVFDDVN--HPRQ--IELLIGRLD-RFASGSQVIITTRD 327 (1866)
Q Consensus 290 k~~LlVlDdv~--~~~~--~~~l~~~~~-~~~~gs~IiiTTR~ 327 (1866)
-. ||||||+. .... .+.+...+. ....|..+||||..
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 44 89999993 2222 222222222 12356679999964
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0071 Score=77.69 Aligned_cols=180 Identities=10% Similarity=0.072 Sum_probs=98.9
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCccccc-------------------ccceEEEE
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKV-------------------MFHVIIWV 1035 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~-------------------~F~~~~wv 1035 (1866)
.+..++|.+..++.+.+++...+.. .+.++|..|+||||+|+.+.+.-.-.. .|-..+.+
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 3445677777888888888766644 578999999999999998854211110 01111112
Q ss_pred EecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHH-HhCCCcEEEEEeCCCCcc--chhhhcCCCCCCCCCcEEEEc
Q 000202 1036 TVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQ-VLNGEKFLLLLDDVWEQI--DLEAVGIPVPGSENGSKIFMA 1112 (1866)
Q Consensus 1036 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IivT 1112 (1866)
.......+. +..++...+.. -..+++-++|+|++.... ..+.+...+.......++|++
T Consensus 94 daAs~~gVd------------------~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILa 155 (709)
T PRK08691 94 DAASNTGID------------------NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILA 155 (709)
T ss_pred eccccCCHH------------------HHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEE
Confidence 111111111 11111111110 123566789999997632 244444444322344566666
Q ss_pred cCChh-hhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHH
Q 000202 1113 SRELD-VCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTI 1174 (1866)
Q Consensus 1113 TR~~~-v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~ 1174 (1866)
|.+.. +.... +-...++++.++.++....+.+.+......- -......|++.++|.+.-+.
T Consensus 156 Ttd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i-d~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 156 TTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY-EPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred eCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHhCCCHHHHH
Confidence 65432 22111 1125678889999998888877664322111 13356778899999875433
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0048 Score=64.12 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=21.1
Q ss_pred EEEEecCCCchhHHHHHHHHhhh
Q 000202 212 LGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 212 i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
|.|+|.+|+||||+|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.02 Score=68.15 Aligned_cols=91 Identities=13% Similarity=0.138 Sum_probs=63.7
Q ss_pred cCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcccc-chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCC
Q 000202 289 RKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDK-QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHL 364 (1866)
Q Consensus 289 ~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 364 (1866)
+++=++|+|+++. ....++++..+....+++.+|++|.+. .++... .....+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----C
Confidence 4556889999984 556777777777667788888877754 333322 235678999999999998887532 1
Q ss_pred ChhHHHHHHHHHHHhCCCcceee
Q 000202 365 DAGYTELAHKALKYAQGVPLALK 387 (1866)
Q Consensus 365 ~~~~~~~~~~i~~~~~GlPLAl~ 387 (1866)
+ .+.+..++..++|.|+...
T Consensus 187 ~---~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 187 S---ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred C---hHHHHHHHHHcCCCHHHHH
Confidence 1 2236678999999998554
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.94 E-value=6.3e-05 Score=83.17 Aligned_cols=118 Identities=16% Similarity=0.093 Sum_probs=77.6
Q ss_pred cccccCCcEEEecccCCccEeccCCCccccccccccccccccccc-ccccccccccccccccccEEeEecCccCccccch
Q 000202 1658 VGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWD-LTCIWQGILPEGSFAELRILSIHACRHLEYVFTC 1736 (1866)
Q Consensus 1658 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~-L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~ 1736 (1866)
+.+|+.|..|+|+-|.-.+...... ....=++|..|+++++.. +...-. ..-...+|+|.+|++++|-.|+.- -.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~--V~hise~l~~LNlsG~rrnl~~sh~-~tL~~rcp~l~~LDLSD~v~l~~~-~~ 331 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVA--VAHISETLTQLNLSGYRRNLQKSHL-STLVRRCPNLVHLDLSDSVMLKND-CF 331 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHH--HhhhchhhhhhhhhhhHhhhhhhHH-HHHHHhCCceeeeccccccccCch-HH
Confidence 3557788888888886555443221 222347888899988733 221000 011236899999999999988862 22
Q ss_pred hhhhhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCc
Q 000202 1737 SMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLP 1785 (1866)
Q Consensus 1737 ~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~ 1785 (1866)
..+.+++.|++|.++.|+.+. ... .-.+...|+|.+|++.+|-
T Consensus 332 ~~~~kf~~L~~lSlsRCY~i~---p~~---~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 332 QEFFKFNYLQHLSLSRCYDII---PET---LLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHHhcchheeeehhhhcCCC---hHH---eeeeccCcceEEEEecccc
Confidence 456679999999999998762 111 1123467999999999875
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.016 Score=67.05 Aligned_cols=187 Identities=13% Similarity=0.105 Sum_probs=110.7
Q ss_pred HHHHHHHHh---ccCCccEEEEEcCCCchHHHHHHHHhcCcccccc----cceEEEEEecCCCCHHHHHHHHHHHhccCC
Q 000202 986 NVRKIFRYV---NDVTASKIGVYGVGGIGKTAALKALISYPEVKVM----FHVIIWVTVSRYWNTRKIQKQVLRQLSLHC 1058 (1866)
Q Consensus 986 ~~~~i~~~l---~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 1058 (1866)
-++++-+.+ ...+.+-+.|+|-.|.|||++++.+...+..... --.++.|..+..++...+...|+.+++...
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 344444444 3455667999999999999999998753322111 114667788888999999999999999887
Q ss_pred CCccCHHHHHHHHHHHhCC-CcEEEEEeCCCCcc---------chhhhcCCCCCCCCCcEEEEccCChhhhccCCC----
Q 000202 1059 KDRETDAQVAEKLWQVLNG-EKFLLLLDDVWEQI---------DLEAVGIPVPGSENGSKIFMASRELDVCRNMDV---- 1124 (1866)
Q Consensus 1059 ~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~---- 1124 (1866)
..............+.|+. +-=+||+|.+.+.- ..+.++ .+.+.-.=+-|.|-|++.--+-..+.
T Consensus 125 ~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK-~L~NeL~ipiV~vGt~~A~~al~~D~QLa~ 203 (302)
T PF05621_consen 125 RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK-FLGNELQIPIVGVGTREAYRALRTDPQLAS 203 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH-HHhhccCCCeEEeccHHHHHHhccCHHHHh
Confidence 6666666666666666654 34588899997621 122221 12121223445555554332222111
Q ss_pred -CcEEEecCCChHH-HHHHHHHHhc--C--CCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1125 -NMVVKLETLSMKD-AWELFCKEVG--G--IIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1125 -~~~~~l~~L~~~~-a~~Lf~~~~~--~--~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
...+.+.....++ ...|+..-.. . ....-...++++.|...++|+.=-+
T Consensus 204 RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 204 RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 1345555555444 3344332111 1 1112234678999999999987443
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0014 Score=69.38 Aligned_cols=104 Identities=34% Similarity=0.427 Sum_probs=62.5
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~ 1455 (1866)
+...+++.+|++..++.+..+++|.+|.|.+| .+..+.+.+-..+++|..|.|.+|+|.++-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d---------------- 105 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGD---------------- 105 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhh----------------
Confidence 34567788888877777777777777777755 5666666665556667777777776654431
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcCCh----hhcCCCccceeccccc
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLPK----EIGKLTSLRYLTVFFF 1502 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~----~i~~L~~L~~L~l~~~ 1502 (1866)
+ .-+..++.|++|.+-+|.++.-+. -+.++++|+.|+...+
T Consensus 106 -----l-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 106 -----L-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred -----c-chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 0 112334455555555555443322 2556666666666543
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.003 Score=72.60 Aligned_cols=149 Identities=15% Similarity=0.143 Sum_probs=85.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCc
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEK 1079 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 1079 (1866)
..+.|||..|+|||.|++++++....+ -..++|++..+ +... ...+.+.+++-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~------------------~~~~~~~~~~~d 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR------------------GPELLDNLEQYE 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh------------------hHHHHHhhhhCC
Confidence 568899999999999999996532211 13456666432 2111 011223333222
Q ss_pred EEEEEeCCCC---ccchhh-hcCCCCC-CCCCcEEEEccCChhh---------hccCCCCcEEEecCCChHHHHHHHHHH
Q 000202 1080 FLLLLDDVWE---QIDLEA-VGIPVPG-SENGSKIFMASRELDV---------CRNMDVNMVVKLETLSMKDAWELFCKE 1145 (1866)
Q Consensus 1080 ~LlVlDdv~~---~~~~~~-l~~~l~~-~~~gs~IivTTR~~~v---------~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 1145 (1866)
+||+||+.. ...|+. +...+.. ...|..||+|++...- ..++....++++++++.++-.+.+.++
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 678999963 234543 2222211 1346778888775332 222233468899999999999998865
Q ss_pred hcCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000202 1146 VGGIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1146 ~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
+....- .--++...-|++.+.|..-++..+
T Consensus 179 a~~~~~-~l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 179 ASRRGL-HLTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHcCC-CCCHHHHHHHHHhcCCCHHHHHHH
Confidence 533211 111345566777777765444433
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0093 Score=72.37 Aligned_cols=192 Identities=10% Similarity=0.003 Sum_probs=103.1
Q ss_pred cccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccc--cccceEEEEEecCCCCHHHHHHHHHHHh
Q 000202 978 TAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVK--VMFHVIIWVTVSRYWNTRKIQKQVLRQL 1054 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~~~~~i~~~l 1054 (1866)
..++|.++....+...+...+.. .+.|+|..|+||||+|..+.+.---. ..+... ....++......+.+...-
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCC
Confidence 34567777777788877666544 58899999999999999885421110 001110 0011111122333332221
Q ss_pred ccC---------C-----CCccCHHHHHHHHHHHh-----CCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEE-Ec
Q 000202 1055 SLH---------C-----KDRETDAQVAEKLWQVL-----NGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIF-MA 1112 (1866)
Q Consensus 1055 ~~~---------~-----~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Ii-vT 1112 (1866)
..+ . ......+++ ..+.+++ .+++-++|+|++..- ...+.+...+.....+..+| +|
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 100 0 001112322 2344443 356678999999853 33444444333222344444 44
Q ss_pred cCChhhhccCC-CCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000202 1113 SRELDVCRNMD-VNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1113 TR~~~v~~~~~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
++-..+..... -...+++.+++.++..+.+.+...... - ..+....|++.++|.|.....+
T Consensus 179 ~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~-~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 179 HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--S-DGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--C-CHHHHHHHHHHcCCCHHHHHHH
Confidence 44333322211 136899999999999999987432211 1 1334667899999999765543
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0066 Score=68.89 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=86.4
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
....+.|+|..|+|||.|.+++++.-.....=..+++++ ..++.+.+...+... . ...+++.+++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~-----~----~~~~~~~~~~ 97 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG-----E----IEEFKDRLRS 97 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT-----S----HHHHHHHHCT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc-----c----chhhhhhhhc
Confidence 345688999999999999999976433221112345554 455666666655431 1 2345555654
Q ss_pred CcEEEEEeCCCCc---cchhhhc-CCCC-CCCCCcEEEEccCChhh---------hccCCCCcEEEecCCChHHHHHHHH
Q 000202 1078 EKFLLLLDDVWEQ---IDLEAVG-IPVP-GSENGSKIFMASRELDV---------CRNMDVNMVVKLETLSMKDAWELFC 1143 (1866)
Q Consensus 1078 kr~LlVlDdv~~~---~~~~~l~-~~l~-~~~~gs~IivTTR~~~v---------~~~~~~~~~~~l~~L~~~~a~~Lf~ 1143 (1866)
-. +|++||++.. ..|+... ..+. ....|.+||+|++...- ...+....++++++++.++..+++.
T Consensus 98 ~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~ 176 (219)
T PF00308_consen 98 AD-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQ 176 (219)
T ss_dssp SS-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHH
T ss_pred CC-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHH
Confidence 43 6779999753 2232211 1111 01356789999865422 2223345689999999999999998
Q ss_pred HHhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1144 KEVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1144 ~~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
+.+....-. --++++.-|++.+.+..-
T Consensus 177 ~~a~~~~~~-l~~~v~~~l~~~~~~~~r 203 (219)
T PF00308_consen 177 KKAKERGIE-LPEEVIEYLARRFRRDVR 203 (219)
T ss_dssp HHHHHTT---S-HHHHHHHHHHTTSSHH
T ss_pred HHHHHhCCC-CcHHHHHHHHHhhcCCHH
Confidence 877432111 123344555555555443
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0079 Score=77.55 Aligned_cols=173 Identities=17% Similarity=0.178 Sum_probs=92.3
Q ss_pred cCCCceeehhhHHHHHHhhh---c-------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccc
Q 000202 184 ESKDLIGVEWRIKEIESLLR---T-------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETG 253 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~---~-------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (1866)
...+++|.+...+++.+.+. . +....+-+.++|++|+|||+||++++......| +.....
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~i~~~----- 122 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FSISGS----- 122 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----eeccHH-----
Confidence 34578888877766655443 1 122345588999999999999999998653322 211110
Q ss_pred cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccCCC--
Q 000202 254 RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLDRF-- 315 (1866)
Q Consensus 254 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~-- 315 (1866)
.+. ....+.. .......+.......+.+|+||+++.. ..+..++..+..+
T Consensus 123 ---~~~----~~~~g~~-----~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 123 ---DFV----EMFVGVG-----ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred ---HHH----HHHhccc-----HHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 111 1111100 001112233333456789999999642 1223333333322
Q ss_pred CCCCEEEEEccccchhc-----cCccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCC
Q 000202 316 ASGSQVIITTRDKQVLT-----NCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQG 381 (1866)
Q Consensus 316 ~~gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G 381 (1866)
..+-.||.||.....+. ....+..++++..+.++-.++|..+.-+..... ......+++.+.|
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G 258 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPG 258 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCC
Confidence 22445566665543221 112356788999999999999987663322111 1123456666665
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.015 Score=75.04 Aligned_cols=193 Identities=11% Similarity=0.068 Sum_probs=102.7
Q ss_pred cccccchhhHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcCccccc--ccceEEEEEecCCCCHHHHHHHHHH
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISYPEVKV--MFHVIIWVTVSRYWNTRKIQKQVLR 1052 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~~~~~~~~~i~~ 1052 (1866)
.+.+++|.+.-++.+.+++...+. ..+-++|..|+||||+|+.+.+.-.-.. ..... ...+++.-...+.|..
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~----~~~pCg~C~~C~~i~~ 89 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGI----TATPCGVCQACRDIDS 89 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCC----CCCCCCccHHHHHHHc
Confidence 344567777777778888876665 4568999999999999999843211000 00000 0011222222222211
Q ss_pred HhccC-----CCCccCHHHHHHHHHH----HhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCC-hhhhc
Q 000202 1053 QLSLH-----CKDRETDAQVAEKLWQ----VLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRE-LDVCR 1120 (1866)
Q Consensus 1053 ~l~~~-----~~~~~~~~~~~~~l~~----~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~ 1120 (1866)
.-..+ .......+++.+.+.. -..++.-++|||+++. ...++.+...+.......++|++|.+ ..+..
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 00000 0011112222221111 1134556889999986 34566666655544445566655543 33322
Q ss_pred c-CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1121 N-MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1121 ~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
. ..-...++++.++.++..+.+.+.+......- -.+....|++.++|.+--+
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i-e~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA-EPQALRLLARAARGSMRDA 222 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 2 11236899999999999888887664322111 1334667888898877443
|
|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.021 Score=69.20 Aligned_cols=150 Identities=12% Similarity=0.122 Sum_probs=88.4
Q ss_pred Ccee-ehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc---------------------ccceEEEE
Q 000202 187 DLIG-VEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH---------------------FEGSYFAC 244 (1866)
Q Consensus 187 ~~vG-r~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~~~~ 244 (1866)
.++| -+..++.+...+..+. -.+...++|..|+||||+|..+++.+-.. ++...++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 4566 5566677777776432 35567899999999999999998864321 11111111
Q ss_pred eeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEE
Q 000202 245 NVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVI 322 (1866)
Q Consensus 245 ~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Ii 322 (1866)
..+. .-. .+-.+++...+.. .-..+.+=++|+|+++. .+..+.++..+....+++.+|
T Consensus 85 ~~~~---~i~-id~ir~l~~~~~~----------------~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~I 144 (329)
T PRK08058 85 PDGQ---SIK-KDQIRYLKEEFSK----------------SGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAI 144 (329)
T ss_pred cccc---cCC-HHHHHHHHHHHhh----------------CCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEE
Confidence 0000 000 0000011100000 00223455788999974 556777887777767788888
Q ss_pred EEccccc-hhccC-ccceeeecCCCCHHHHHHHHHhh
Q 000202 323 ITTRDKQ-VLTNC-EVDHIYQMKELVHADAHKLFTQC 357 (1866)
Q Consensus 323 iTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 357 (1866)
++|.+.. +.... ....++++.+++.++..+.+...
T Consensus 145 l~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 145 LLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 8887643 33222 23578999999999998888653
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.019 Score=71.30 Aligned_cols=182 Identities=12% Similarity=0.057 Sum_probs=101.7
Q ss_pred ccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcc--ccc------------------ccceEEEE
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPE--VKV------------------MFHVIIWV 1035 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~--~~~------------------~F~~~~wv 1035 (1866)
+..++|.++.++.+.+.+...+.+ .+-++|..|+||||+|+.+...-. ... +++. .++
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~ 91 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEI 91 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEe
Confidence 334667778888888888665544 577899999999999988853211 000 1221 222
Q ss_pred EecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEcc
Q 000202 1036 TVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMAS 1113 (1866)
Q Consensus 1036 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTT 1113 (1866)
.-....... -.+++...+.. .-..+++-++|+|++... ...+.+...+........+|++|
T Consensus 92 ~~~~~~~~~-~~~~l~~~~~~----------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~ 154 (355)
T TIGR02397 92 DAASNNGVD-DIREILDNVKY----------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILAT 154 (355)
T ss_pred eccccCCHH-HHHHHHHHHhc----------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEe
Confidence 211111111 11122221110 012345558889998653 34555555554333456666666
Q ss_pred CChh-hhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 000202 1114 RELD-VCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTA 1177 (1866)
Q Consensus 1114 R~~~-v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g 1177 (1866)
.+.. +.... .....+++++++.++..+.+...+......- -.+.+..+++.++|.|..+....
T Consensus 155 ~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i-~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 155 TEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI-EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCChHHHHHHH
Confidence 5543 22211 1225788899999998888877654321111 13556778899999886555443
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.015 Score=73.00 Aligned_cols=178 Identities=12% Similarity=0.056 Sum_probs=100.5
Q ss_pred ccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCc---cc----------------ccccceEEEEE
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYP---EV----------------KVMFHVIIWVT 1036 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~---~~----------------~~~F~~~~wv~ 1036 (1866)
+.+++|.+.-++.+.+.+...+.. .+-++|..|+||||+|+.+...- .- .+.+..++.++
T Consensus 12 f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid 91 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEID 91 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEe
Confidence 345667666677777777666654 68899999999999998885311 00 00111222333
Q ss_pred ecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccC
Q 000202 1037 VSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASR 1114 (1866)
Q Consensus 1037 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR 1114 (1866)
.+...++.++ ++|.+.... .-..+++-++|+|++... ...+.+...+.......++|++|.
T Consensus 92 aas~~~vddI-R~Iie~~~~----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatt 154 (491)
T PRK14964 92 AASNTSVDDI-KVILENSCY----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATT 154 (491)
T ss_pred cccCCCHHHH-HHHHHHHHh----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 3222222221 112111110 012355668999999753 345566555544445666666554
Q ss_pred C-hhhhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHH
Q 000202 1115 E-LDVCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLL 1172 (1866)
Q Consensus 1115 ~-~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLA 1172 (1866)
+ ..+.... .-...+++++++.++..+.+.+.+......- -++....|++.++|.+-.
T Consensus 155 e~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i-~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 155 EVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH-DEESLKLIAENSSGSMRN 213 (491)
T ss_pred ChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 3 3443221 1236789999999999888887664322111 133456788899887743
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.017 Score=70.58 Aligned_cols=193 Identities=11% Similarity=-0.018 Sum_probs=103.0
Q ss_pred cccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCccccc--ccce-EEEEEecCCCCHHHHHHHHHHH
Q 000202 978 TAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKV--MFHV-IIWVTVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~--~F~~-~~wv~vs~~~~~~~~~~~i~~~ 1053 (1866)
..++|.++.++.+.+.+...+.. .+-++|+.|+||+|+|..+.+.---.. .... ..-.........-...+.+...
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~ 98 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAG 98 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHcc
Confidence 34667777777888888776655 588999999999999988744211000 0000 0000000000001111222111
Q ss_pred hccC---------C-----CCccCHHHHHHHHHHHh-----CCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEc
Q 000202 1054 LSLH---------C-----KDRETDAQVAEKLWQVL-----NGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMA 1112 (1866)
Q Consensus 1054 l~~~---------~-----~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivT 1112 (1866)
-..+ . ...-..++ +..+.+.+ .+.+-++|+||+.. ....+.+...+..-..++.+|++
T Consensus 99 ~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~ 177 (365)
T PRK07471 99 AHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLV 177 (365)
T ss_pred CCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 1000 0 00111222 23333443 25567899999975 33445554444333345667777
Q ss_pred cCChh-hhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000202 1113 SRELD-VCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1113 TR~~~-v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
|.+.+ +.... .-...+.+.+++.++..+++.+...... ......+++.++|.|+.+..+
T Consensus 178 t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 178 SHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred ECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-----HHHHHHHHHHcCCCHHHHHHH
Confidence 66653 32221 1236889999999999999987643211 111256899999999765443
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.007 Score=82.87 Aligned_cols=67 Identities=21% Similarity=0.299 Sum_probs=48.5
Q ss_pred hhhhhHHHHhhcccccccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 165 LVADIANEVLERLDDTFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 165 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
.+.+...++..+.. +...+.+|||+.++..+...|.... ..-+.++|.+|+|||+||..+++++...
T Consensus 155 ~l~~~~~~l~~~~~---~~~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~ 221 (852)
T TIGR03346 155 ALEKYARDLTERAR---EGKLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNG 221 (852)
T ss_pred HHHHHhhhHHHHhh---CCCCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhcc
Confidence 44444444444332 2344679999999999999987543 2345689999999999999999987553
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0045 Score=82.13 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=46.6
Q ss_pred hhhhhHHHHhhcccccccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 165 LVADIANEVLERLDDTFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 165 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+.+...++...-.. ...++++||+.++.++.+.|..... .-+.++|.+|+|||++|+.+++++.
T Consensus 168 ~l~~~~~~l~~~a~~---g~~~~liGR~~ei~~~i~iL~r~~~--~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 168 RMENFTTNLNQLARV---GGIDPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred HHHHHHHhHHHHHHc---CCCCcCcCCCHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHHHHH
Confidence 455555554433222 2235799999999999998886432 2356899999999999999998653
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.032 Score=66.39 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=70.2
Q ss_pred cCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEcccc-chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCC
Q 000202 289 RKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDK-QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHL 364 (1866)
Q Consensus 289 ~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 364 (1866)
+++=++|+|+++ +....++++..+....+++.+|++|.+. .++... .....+.+.+++.+++.+.+.....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~----- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGI----- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCC-----
Confidence 345578899998 4567778887777767788888777665 344332 2356889999999999998875421
Q ss_pred ChhHHHHHHHHHHHhCCCcceeeeecccccCCCHHHHHHHHHHh
Q 000202 365 DAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKL 408 (1866)
Q Consensus 365 ~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~~~~~w~~~l~~l 408 (1866)
. .+..+++.++|.|+....+ +.....+.++..+..+
T Consensus 182 ~-----~~~~~l~l~~G~p~~A~~~---~~~~~~~~~~~~~~~l 217 (319)
T PRK06090 182 T-----VPAYALKLNMGSPLKTLAM---MKEGGLEKYHKLERQL 217 (319)
T ss_pred c-----hHHHHHHHcCCCHHHHHHH---hCCCcHHHHHHHHHHH
Confidence 1 1346789999999865433 3333344444444433
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=4.5e-05 Score=93.57 Aligned_cols=123 Identities=25% Similarity=0.254 Sum_probs=80.4
Q ss_pred ccccCcEEEccCCCCCCCCC-CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEE
Q 000202 1373 EWTHAKMIFFMDNDLQTLPG-RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQIL 1450 (1866)
Q Consensus 1373 ~~~~l~~l~l~~~~l~~l~~-~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L 1450 (1866)
.|..|.+.++++|.+..+.. +.-++.|+.|+|++|.. ..+. .+..+++|++|||++|.+..+|. +...+ +|+.|
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~-~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L 237 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKF-TKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLL 237 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhh-hhhH--HHHhcccccccccccchhccccccchhhh-hheee
Confidence 35666677777777765542 33456788888888743 2322 34667888888888888887773 22233 38888
Q ss_pred ecccccCcccCCccccCCCCCcEEEccCCCCCcCC--hhhcCCCccceecccc
Q 000202 1451 ILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLP--KEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1451 ~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~ 1501 (1866)
.|++|.. ..+ ..+.+|.+|+.||++.|-|.... .-++.|..|+.|.+.+
T Consensus 238 ~lrnN~l-~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 238 NLRNNAL-TTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred eecccHH-Hhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence 8888874 333 36778888888888888665332 1256666777777654
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0063 Score=77.42 Aligned_cols=187 Identities=9% Similarity=-0.029 Sum_probs=97.3
Q ss_pred ccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+.+++|++..++.+.+++...+.+ .+-++|+.|+||||+|+.+.+.-.-.. |... .+++.-...+.+.....
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESINTNQS 87 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHHcCCC
Confidence 445677777788888888655444 678999999999999999854211100 1110 11111122222211111
Q ss_pred cC-----CCCccCHH---HHHHHHHH-HhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEcc-CChhhhcc-C
Q 000202 1056 LH-----CKDRETDA---QVAEKLWQ-VLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMAS-RELDVCRN-M 1122 (1866)
Q Consensus 1056 ~~-----~~~~~~~~---~~~~~l~~-~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~-~ 1122 (1866)
.+ .......+ ++...+.. -..+++-++|+|++.. ...++.+...+........+|++| ....+... .
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~ 167 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTII 167 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHH
Confidence 00 00001111 11111111 0123344699999875 344565555443333345555444 43333221 1
Q ss_pred CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1123 DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1123 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
.....+++.+++.++....+.+.+......- -.+.+..+++.++|.+-
T Consensus 168 SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I-s~eal~~La~lS~GdlR 215 (605)
T PRK05896 168 SRCQRYNFKKLNNSELQELLKSIAKKEKIKI-EDNAIDKIADLADGSLR 215 (605)
T ss_pred hhhhhcccCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHH
Confidence 1235789999999999888877653221111 13346678889999664
|
|
| >KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.04 Score=66.00 Aligned_cols=200 Identities=18% Similarity=0.173 Sum_probs=118.0
Q ss_pred cchhhHHHHHHHHHh----ccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 980 VNYTQRNVRKIFRYV----NDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
..||+.++..+.+++ .....+.+-|.|-+|.|||.+...++.+..-...=-.++++.+..-.....+...|...+-
T Consensus 152 l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~ 231 (529)
T KOG2227|consen 152 LKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLL 231 (529)
T ss_pred ccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHH
Confidence 567788888777777 3345667899999999999999988654322211124466665544566777777777774
Q ss_pred cCCCCccCHHHHHHHHHHHhCCC--cEEEEEeCCCCcc--chhhhcCC--CCCCCCCcEEEEc--cCChhh----hcc--
Q 000202 1056 LHCKDRETDAQVAEKLWQVLNGE--KFLLLLDDVWEQI--DLEAVGIP--VPGSENGSKIFMA--SRELDV----CRN-- 1121 (1866)
Q Consensus 1056 ~~~~~~~~~~~~~~~l~~~L~~k--r~LlVlDdv~~~~--~~~~l~~~--l~~~~~gs~IivT--TR~~~v----~~~-- 1121 (1866)
..........+..+.+.++..+. -+|+|+|.++... .-..+... |+. -++|++|+. ...-+. ...
T Consensus 232 q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~-lp~sr~iLiGiANslDlTdR~LprL~ 310 (529)
T KOG2227|consen 232 QDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK-LPNSRIILIGIANSLDLTDRFLPRLN 310 (529)
T ss_pred HHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhccc-CCcceeeeeeehhhhhHHHHHhhhhh
Confidence 43333344466667777777654 4899999986411 11111111 222 245665543 111111 111
Q ss_pred ---CCCCcEEEecCCChHHHHHHHHHHhcCCCCC----chHHHHHHHHHHHcCCChHHHHHHHHHh
Q 000202 1122 ---MDVNMVVKLETLSMKDAWELFCKEVGGIIQS----PDIHLYARAIVKGCCGLPLLTIVTAKAL 1180 (1866)
Q Consensus 1122 ---~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~----~~~~~~~~~I~~~c~GlPLAi~~~g~~L 1180 (1866)
.........++-+.++-.++|..+....... +.++-.|++++.--|-+=.|+.+.-+++
T Consensus 311 ~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 311 LDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 1224678889999999999999887554332 2344455555555555556665555444
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.014 Score=75.06 Aligned_cols=177 Identities=11% Similarity=0.067 Sum_probs=97.5
Q ss_pred ccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccc-------------------cccceEEEEE
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVK-------------------VMFHVIIWVT 1036 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~ 1036 (1866)
+..++|.+.-++.+.+++...+.. .+-++|..|+||||+|+.+...-.-. +.|...+++.
T Consensus 15 f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 345667777777788888766654 46799999999999999985321110 0111122222
Q ss_pred ecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccC
Q 000202 1037 VSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASR 1114 (1866)
Q Consensus 1037 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR 1114 (1866)
.+....+.. .++++..+.. .-..+++-++|+|++... ...+.+...+........+|++|.
T Consensus 95 ~~~~~~vd~-ir~l~~~~~~----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~ 157 (527)
T PRK14969 95 AASNTQVDA-MRELLDNAQY----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (527)
T ss_pred ccccCCHHH-HHHHHHHHhh----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeC
Confidence 111111111 1122211110 012356678999999853 335555555544334566666554
Q ss_pred Ch-hhhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1115 EL-DVCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1115 ~~-~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
+. .+.... .-...+++++++.++..+.+.+.+....... -......|++.++|.+-
T Consensus 158 d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~-~~~al~~la~~s~Gslr 215 (527)
T PRK14969 158 DPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF-DATALQLLARAAAGSMR 215 (527)
T ss_pred ChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHH
Confidence 43 332111 1125788999999998887776653221111 12345678888999774
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0071 Score=69.60 Aligned_cols=152 Identities=14% Similarity=0.043 Sum_probs=83.5
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
....+.|+|..|+|||+||+.+++.... ... ...+++..... .. + ....
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~-~~~-~~~~i~~~~~~------~~----~------------------~~~~- 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASY-GGR-NARYLDAASPL------LA----F------------------DFDP- 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh-CCC-cEEEEehHHhH------HH----H------------------hhcc-
Confidence 3457889999999999999999663211 111 23344433210 00 0 1112
Q ss_pred CcEEEEEeCCCCccch--hhhcCCCCC-CCCCc-EEEEccCChhhhc--------cCCCCcEEEecCCChHHHHHHHHHH
Q 000202 1078 EKFLLLLDDVWEQIDL--EAVGIPVPG-SENGS-KIFMASRELDVCR--------NMDVNMVVKLETLSMKDAWELFCKE 1145 (1866)
Q Consensus 1078 kr~LlVlDdv~~~~~~--~~l~~~l~~-~~~gs-~IivTTR~~~v~~--------~~~~~~~~~l~~L~~~~a~~Lf~~~ 1145 (1866)
..-+||+||+.....+ +.+...+.. ...|. .||+|++...... .+.....+++.+|++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 2337889999753221 222222211 12344 3666666433221 2222368899999998877766654
Q ss_pred hcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 000202 1146 VGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALA 1181 (1866)
Q Consensus 1146 ~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~ 1181 (1866)
+.... ..--++....+++.+.|.+..+..+-..|.
T Consensus 170 ~~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 170 AAERG-LQLADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 32211 111234566677888999888776666553
|
|
| >cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0032 Score=72.41 Aligned_cols=90 Identities=20% Similarity=0.296 Sum_probs=57.5
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhcccccc---Cccchh--H----
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVK---NFQNIS--V---- 280 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~---~~~~~~--~---- 280 (1866)
+.++|.|-+|+||||||..+++.++.+|+..+++...++ ......++.+++...-....... ..+... .
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGe--r~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGE--RTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc--CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 468999999999999999999999888888888877766 33334555555543211111000 000000 0
Q ss_pred ---HHHHHHh--h-cCcEEEEEecCCC
Q 000202 281 ---NFQSKRL--A-RKKVLIVFDDVNH 301 (1866)
Q Consensus 281 ---~~l~~~L--~-~k~~LlVlDdv~~ 301 (1866)
-.+.+++ + ++++|+|+||+-.
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1233444 3 8899999999964
|
The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0045 Score=65.06 Aligned_cols=35 Identities=29% Similarity=0.251 Sum_probs=27.1
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
..+.|+|.+|+||||+|+.++..........+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 46899999999999999999997766543344443
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.027 Score=68.03 Aligned_cols=89 Identities=11% Similarity=0.142 Sum_probs=63.1
Q ss_pred cCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccccc-hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCC
Q 000202 289 RKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDKQ-VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHL 364 (1866)
Q Consensus 289 ~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 364 (1866)
+++=++|+|+++ +.+..+.++..+..-.+++.+|++|.+.+ ++... .....+.+.+++.+++.+.+.... + .
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~--~--~ 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV--T--M 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc--C--C
Confidence 456688999998 45677788887777677888888777653 44332 224578999999999988886542 1 1
Q ss_pred ChhHHHHHHHHHHHhCCCcc
Q 000202 365 DAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 365 ~~~~~~~~~~i~~~~~GlPL 384 (1866)
+ .+.+..++..++|.|.
T Consensus 183 ~---~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 183 S---QDALLAALRLSAGAPG 199 (334)
T ss_pred C---HHHHHHHHHHcCCCHH
Confidence 1 2336778999999995
|
|
| >COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.016 Score=71.93 Aligned_cols=164 Identities=16% Similarity=0.112 Sum_probs=96.9
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccc
Q 000202 193 WRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNV 272 (1866)
Q Consensus 193 ~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~ 272 (1866)
.-+.++.+.+.... .++.|.|+-++||||+++.+.....+. .+++..... ......+ .+.....
T Consensus 24 ~~~~~l~~~~~~~~---~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~---~~~~~~l-~d~~~~~------ 87 (398)
T COG1373 24 KLLPRLIKKLDLRP---FIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDL---RLDRIEL-LDLLRAY------ 87 (398)
T ss_pred hhhHHHHhhcccCC---cEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecch---hcchhhH-HHHHHHH------
Confidence 34444555544322 289999999999999997666655443 344432111 0000111 1111111
Q ss_pred cCccchhHHHHHHHhhcCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccchhccC------ccceeeecCCCC
Q 000202 273 KNFQNISVNFQSKRLARKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNC------EVDHIYQMKELV 346 (1866)
Q Consensus 273 ~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~------~~~~~~~l~~L~ 346 (1866)
...... ++.+|+||.|.....|+.....+-+.++. +|+||+-+....... |....+++-||+
T Consensus 88 ----------~~~~~~-~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 88 ----------IELKER-EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred ----------HHhhcc-CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 111111 78899999999999999888887776766 899998776554321 445678999999
Q ss_pred HHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeec
Q 000202 347 HADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLG 390 (1866)
Q Consensus 347 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g 390 (1866)
..|-..+-...+ ... .. +..-+-.-..||.|-++..-.
T Consensus 156 F~Efl~~~~~~~----~~~-~~-~~~f~~Yl~~GGfP~~v~~~~ 193 (398)
T COG1373 156 FREFLKLKGEEI----EPS-KL-ELLFEKYLETGGFPESVKADL 193 (398)
T ss_pred HHHHHhhccccc----chh-HH-HHHHHHHHHhCCCcHHHhCcc
Confidence 999876543111 001 11 112223345799998876543
|
|
| >KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.008 Score=69.91 Aligned_cols=159 Identities=18% Similarity=0.283 Sum_probs=97.2
Q ss_pred cchhhHHHHHHHHHhccCC---ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhcc
Q 000202 980 VNYTQRNVRKIFRYVNDVT---ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l~~~~---~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 1056 (1866)
+.+|+.++..+...+.+.. .+.|-|+|..|.|||.+.+++++.... ..+|+++-+.++.+.+...|+.++..
T Consensus 8 v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~~~ 82 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKSQL 82 (438)
T ss_pred ccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHhcc
Confidence 4467778887777774433 234578999999999999999775532 35899999999999999999999952
Q ss_pred CCCCc-------cCHHHHHHHHHH--HhC--CCcEEEEEeCCCCccchhhhcCC----CC--CCCCCcEEEEccCC--hh
Q 000202 1057 HCKDR-------ETDAQVAEKLWQ--VLN--GEKFLLLLDDVWEQIDLEAVGIP----VP--GSENGSKIFMASRE--LD 1117 (1866)
Q Consensus 1057 ~~~~~-------~~~~~~~~~l~~--~L~--~kr~LlVlDdv~~~~~~~~l~~~----l~--~~~~gs~IivTTR~--~~ 1117 (1866)
...+. .+..+.+..+.+ ... ++.++||||+++...+.+.+.-+ +. -..+.. +|+++-- +.
T Consensus 83 ~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~~~e~ 161 (438)
T KOG2543|consen 83 ADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAPSCEK 161 (438)
T ss_pred CCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEeccccHH
Confidence 22111 112233333444 222 46899999999875554432111 00 011222 3333221 11
Q ss_pred h-hccCCC--CcEEEecCCChHHHHHHHHH
Q 000202 1118 V-CRNMDV--NMVVKLETLSMKDAWELFCK 1144 (1866)
Q Consensus 1118 v-~~~~~~--~~~~~l~~L~~~~a~~Lf~~ 1144 (1866)
. ...++. ..++....-+.++-..++.+
T Consensus 162 ~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 162 QYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred HhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 1 222333 23556777788888888765
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0007 Score=75.22 Aligned_cols=80 Identities=28% Similarity=0.297 Sum_probs=47.0
Q ss_pred HHhcCCCCcEEEccCCCCCCCC---hhhcCCCCCcEEecccccCc---ccCCccccCCCCCcEEEccCCCCC--cCChhh
Q 000202 1417 FFELMTSLKVLNLSKTRIKSLP---ETLVNLKCLQILILRDCDFL---FVLPPEVGSLECLEVLDLRGTEIK--MLPKEI 1488 (1866)
Q Consensus 1417 ~~~~l~~L~~L~Ls~~~i~~lp---~~i~~L~~L~~L~L~~~~~~---~~lP~~i~~L~~L~~L~l~~~~i~--~lp~~i 1488 (1866)
+-....+++.|||.+|.|+... .-+.+|++|++|+|+.|++. +.+| ..+.+|++|-|.|+.+. .....+
T Consensus 66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhh
Confidence 3345677888888888776433 33456777777777777643 2222 23457777777777543 333334
Q ss_pred cCCCccceecc
Q 000202 1489 GKLTSLRYLTV 1499 (1866)
Q Consensus 1489 ~~L~~L~~L~l 1499 (1866)
..++.++.|++
T Consensus 143 ~~lP~vtelHm 153 (418)
T KOG2982|consen 143 DDLPKVTELHM 153 (418)
T ss_pred hcchhhhhhhh
Confidence 44555555544
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.022 Score=73.10 Aligned_cols=194 Identities=13% Similarity=0.077 Sum_probs=102.7
Q ss_pred cccchhhHHHHHHHHHhccCC-ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhcc
Q 000202 978 TAVNYTQRNVRKIFRYVNDVT-ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 1056 (1866)
.+++|.+..++.+.+.+...+ ...+-++|..|+||||+|+.+.+.-.-....+ ..+++.-...+.|......
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~~g~hp 88 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVTQGMHV 88 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHhcCCCC
Confidence 345566666666666676554 35677899999999999999854322111000 0111111222222111100
Q ss_pred CC-----CCccCHHHHHHHHHHH-----hCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCC-hhhhccC-
Q 000202 1057 HC-----KDRETDAQVAEKLWQV-----LNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRE-LDVCRNM- 1122 (1866)
Q Consensus 1057 ~~-----~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~- 1122 (1866)
+. ......+++ ..+.+. ..+++-+||+|++... ...+.|...+........+|++|.+ ..+....
T Consensus 89 Dv~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~ 167 (624)
T PRK14959 89 DVVEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIV 167 (624)
T ss_pred ceEEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHH
Confidence 00 000111111 112211 2456678999999753 4456665555432334556665554 3333221
Q ss_pred CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh-HHHHHHHHHh
Q 000202 1123 DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLP-LLTIVTAKAL 1180 (1866)
Q Consensus 1123 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP-LAi~~~g~~L 1180 (1866)
.-...+++++++.++....+.+.+...... --.+.+..|++.++|.+ .|+..+...+
T Consensus 168 SRcq~i~F~pLs~~eL~~~L~~il~~egi~-id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 168 SRCQHFTFTRLSEAGLEAHLTKVLGREGVD-YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhhccccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 112578999999999988887755432111 11345667888899865 5666665544
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.012 Score=69.54 Aligned_cols=131 Identities=15% Similarity=0.096 Sum_probs=68.5
Q ss_pred EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcE
Q 000202 1001 KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKF 1080 (1866)
Q Consensus 1001 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~ 1080 (1866)
-+.++|.+|+||||+|+.+.......+.....-++.++. .+ +...+... ........+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~-----~~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGH-----TAPKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhccc-----chHHHHHHHHHc---cCc
Confidence 477999999999999987754322222221112444442 12 22222111 111122222222 336
Q ss_pred EEEEeCCCCc-----------cchhhhcCCCCCCCCCcEEEEccCChhhhccC--------CCCcEEEecCCChHHHHHH
Q 000202 1081 LLLLDDVWEQ-----------IDLEAVGIPVPGSENGSKIFMASRELDVCRNM--------DVNMVVKLETLSMKDAWEL 1141 (1866)
Q Consensus 1081 LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~--------~~~~~~~l~~L~~~~a~~L 1141 (1866)
+|+||++... +.++.+...+.....+-+||+++.....-... .....+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999621 12333444443334455666666543221111 1135789999999999888
Q ss_pred HHHHhc
Q 000202 1142 FCKEVG 1147 (1866)
Q Consensus 1142 f~~~~~ 1147 (1866)
+.+.+.
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 876553
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.024 Score=76.01 Aligned_cols=189 Identities=9% Similarity=-0.022 Sum_probs=100.7
Q ss_pred ccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHH--
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQ-- 1053 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-- 1053 (1866)
+.+++|.+..++.|.+.+...++. .+.++|..|+||||+|+.+.+.-.-..... ..+++.-...+.|...
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~-------~~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPT-------STPCGECDSCVALAPGGP 86 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCC-------CCCCcccHHHHHHHcCCC
Confidence 445677777788888888766655 478999999999999999854221100000 0001111111111110
Q ss_pred -----hccCCCCccCHHHHH---HHHH-HHhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCC-hhhhcc
Q 000202 1054 -----LSLHCKDRETDAQVA---EKLW-QVLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRE-LDVCRN 1121 (1866)
Q Consensus 1054 -----l~~~~~~~~~~~~~~---~~l~-~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~ 1121 (1866)
+..+.......+++. +.+. .-..++.-++|||++.. ...++.|...+..-...+.+|++|.+ ..+...
T Consensus 87 ~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~T 166 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGT 166 (824)
T ss_pred CCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 000000001112221 1111 11345566788999985 34556665555544445666655543 344332
Q ss_pred C-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1122 M-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1122 ~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
. .-...|++..++.++..+.+.+.+......- -......|++.++|.+..+
T Consensus 167 IrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i-d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 167 IRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV-EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 2 2236899999999998888876553221111 1234567889999987433
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.026 Score=73.14 Aligned_cols=196 Identities=10% Similarity=-0.005 Sum_probs=105.0
Q ss_pred CcccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccc--eEEEEEecCCCCHHHHHHHHH
Q 000202 975 SNVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFH--VIIWVTVSRYWNTRKIQKQVL 1051 (1866)
Q Consensus 975 ~~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~ 1051 (1866)
..+.+++|.+..++.+.+.+...+.. .+-++|+.|+||||+|+.+.+.-.-..... ...+ .++..-.-.+.|.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~i~ 96 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQAIM 96 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHHHh
Confidence 34456778888888888888766544 588999999999999999854321111000 0000 0111111112222
Q ss_pred HHhccCC-----CCccCHHH---HHHHHHH-HhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEcc-CChhhh
Q 000202 1052 RQLSLHC-----KDRETDAQ---VAEKLWQ-VLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMAS-RELDVC 1119 (1866)
Q Consensus 1052 ~~l~~~~-----~~~~~~~~---~~~~l~~-~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~~~v~ 1119 (1866)
..-..+. ......++ +++.++. -..+++-++|+|++... ...+.+...+..-..++++|++| ....+.
T Consensus 97 ~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 97 EGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 1111100 01111222 2222111 12345567899999753 34555655554434456666555 333333
Q ss_pred ccCC-CCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 000202 1120 RNMD-VNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIV 1175 (1866)
Q Consensus 1120 ~~~~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~ 1175 (1866)
.... -...+++..++.++....+.+.+......- -.+....|++.++|.+.-+..
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i-~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV-EDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 2211 135789999999999888887664321111 124567789999998865443
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.015 Score=79.04 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=82.1
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCc---ccccc-cceEEE-EEecCCCCHHHHHHHHHHH
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYP---EVKVM-FHVIIW-VTVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~---~~~~~-F~~~~w-v~vs~~~~~~~~~~~i~~~ 1053 (1866)
.++||++++.+++..|......-+.++|.+|+||||+|+.+.+.- .+... .+..+| +..+.
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~-------------- 253 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL-------------- 253 (852)
T ss_pred cccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh--------------
Confidence 467899999999998866655667799999999999999985421 11111 123332 22221
Q ss_pred hccCCCCccCHHHHHHHHHHHh--CCCcEEEEEeCCCCcc-------chh---hhcCCCCCCCCC-cEEEEccCChhhhc
Q 000202 1054 LSLHCKDRETDAQVAEKLWQVL--NGEKFLLLLDDVWEQI-------DLE---AVGIPVPGSENG-SKIFMASRELDVCR 1120 (1866)
Q Consensus 1054 l~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~-------~~~---~l~~~l~~~~~g-s~IivTTR~~~v~~ 1120 (1866)
+..........+.....+.+.+ .+++.+|++|++.... .-+ .++..+ ..| -++|-||.......
T Consensus 254 l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l---~~G~l~~IgaTT~~e~~~ 330 (852)
T TIGR03345 254 LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL---ARGELRTIAATTWAEYKK 330 (852)
T ss_pred hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh---hCCCeEEEEecCHHHHhh
Confidence 0000000111111112222222 2578999999987521 112 133222 233 34555555432211
Q ss_pred cC-------CCCcEEEecCCChHHHHHHHHHHh
Q 000202 1121 NM-------DVNMVVKLETLSMKDAWELFCKEV 1146 (1866)
Q Consensus 1121 ~~-------~~~~~~~l~~L~~~~a~~Lf~~~~ 1146 (1866)
.. .-..++.+++++.++..+++....
T Consensus 331 ~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 331 YFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred hhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 11 112589999999999999975433
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.021 Score=70.86 Aligned_cols=134 Identities=19% Similarity=0.208 Sum_probs=82.0
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCH
Q 000202 985 RNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETD 1064 (1866)
Q Consensus 985 ~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~ 1064 (1866)
.-+.++.+.+..... ++.|.|+-++||||+++.+.. ..... .+++...+......-..+...
T Consensus 24 ~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~--~~~~~---~iy~~~~d~~~~~~~l~d~~~------------ 85 (398)
T COG1373 24 KLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIK--GLLEE---IIYINFDDLRLDRIELLDLLR------------ 85 (398)
T ss_pred hhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHh--hCCcc---eEEEEecchhcchhhHHHHHH------------
Confidence 344445555544333 899999999999999977722 22111 455543322111111111111
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhhcc-----C-CCCcEEEecCCChHHH
Q 000202 1065 AQVAEKLWQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVCRN-----M-DVNMVVKLETLSMKDA 1138 (1866)
Q Consensus 1065 ~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~-----~-~~~~~~~l~~L~~~~a 1138 (1866)
.+...-..++.+|+||.|....+|+.....+.+.++. +|++|+-+...... . +-...+.+-||+..|-
T Consensus 86 -----~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Ef 159 (398)
T COG1373 86 -----AYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREF 159 (398)
T ss_pred -----HHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHH
Confidence 1111112278899999999999999887777776665 88888877665322 1 2245789999999888
Q ss_pred HHHH
Q 000202 1139 WELF 1142 (1866)
Q Consensus 1139 ~~Lf 1142 (1866)
..+-
T Consensus 160 l~~~ 163 (398)
T COG1373 160 LKLK 163 (398)
T ss_pred Hhhc
Confidence 7653
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0076 Score=70.05 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=27.3
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
.-+.++|.+|+|||.||.++++....+.-.+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 34899999999999999999997665544455543
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0097 Score=68.28 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=28.9
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
...+.++|.+|+|||+||.++++.+....-.+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 356899999999999999999998776554455553
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.026 Score=73.30 Aligned_cols=195 Identities=10% Similarity=0.040 Sum_probs=99.9
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEE-ecCCCCHHHHHHHHHHH
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVT-VSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~~ 1053 (1866)
.+.+++|.+..++.+.+.+...++. .+.++|+.|+||||+|+.+.+.-.-...++.-.|-. +..+++.-...+.+...
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 3445667777777777777666554 478999999999999988854221111110000100 00111111222222111
Q ss_pred hccC-----CCCccCHHHHHHHHHHH----hCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEcc-CChhhhcc
Q 000202 1054 LSLH-----CKDRETDAQVAEKLWQV----LNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMAS-RELDVCRN 1121 (1866)
Q Consensus 1054 l~~~-----~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~ 1121 (1866)
-..+ .......+++...+... ..+.+-++|+|+++.- ...+.+...+..-...+.+|++| +...+...
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 0000 00111122222222111 2355567899998763 34555555554433445555544 43444322
Q ss_pred -CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1122 -MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1122 -~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
......+++++++.++....+.+.+...... --.+.+..|++.++|..-
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi~-I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ-IDADALQLIARKAQGSMR 223 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHH
Confidence 2224689999999999887777655321110 013456678899999554
|
|
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0082 Score=77.59 Aligned_cols=53 Identities=25% Similarity=0.273 Sum_probs=43.7
Q ss_pred cccCCCceeehhhHHHHHHhhhcCC---CCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGS---AGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~---~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
|....+++|-+..++++..++.... ...++++|+|.+|+||||+++.++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4556789999999999999987532 3356799999999999999999998654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.01 Score=67.01 Aligned_cols=131 Identities=10% Similarity=0.025 Sum_probs=73.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCc
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEK 1079 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 1079 (1866)
+.+-|||..|+|||+|++.+.+.... .++. ..+.. . +.++ ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~~---------------------~-------~~~~-~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFFN---------------------E-------EILE-KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhhc---------------------h-------hHHh-cC
Confidence 56889999999999999998554321 1111 00000 0 0111 23
Q ss_pred EEEEEeCCCCccc--hhhhcCCCCCCCCCcEEEEccCChhh-------hccCCCCcEEEecCCChHHHHHHHHHHhcCCC
Q 000202 1080 FLLLLDDVWEQID--LEAVGIPVPGSENGSKIFMASRELDV-------CRNMDVNMVVKLETLSMKDAWELFCKEVGGII 1150 (1866)
Q Consensus 1080 ~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~IivTTR~~~v-------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~ 1150 (1866)
-+|++||+....+ +-.+...+ ...|..||+|++...- ..++....++++++++.++-..+..+.+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~--~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNII--NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHH--HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 4788899974221 11111111 1356788988875432 22333445899999999998888877664211
Q ss_pred CCchHHHHHHHHHHHcCCChH
Q 000202 1151 QSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1151 ~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
-.--+++..-|++.+.|---
T Consensus 165 -l~l~~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 165 -VTISRQIIDFLLVNLPREYS 184 (214)
T ss_pred -CCCCHHHHHHHHHHccCCHH
Confidence 01113445556666666543
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.013 Score=76.79 Aligned_cols=192 Identities=11% Similarity=0.036 Sum_probs=103.6
Q ss_pred cccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhcc
Q 000202 978 TAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 1056 (1866)
..++|.+.-++.+.+++...+.. .+.++|..|+||||+|+.+.+.-.-.... ....+++.....+.|......
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~------~~~~~c~~c~~c~~i~~~~~~ 89 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTND------PKGRPCGTCEMCRAIAEGSAV 89 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCC------CCCCCCccCHHHHHHhcCCCC
Confidence 34667777777777777655543 46799999999999999985422110000 000112222333333322211
Q ss_pred CC-----CCccCHHHHHHHHHHHh-----CCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCC-hhhhccC-
Q 000202 1057 HC-----KDRETDAQVAEKLWQVL-----NGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRE-LDVCRNM- 1122 (1866)
Q Consensus 1057 ~~-----~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~- 1122 (1866)
+. ......+++. .+.+.+ .+++-++|+|++.. ....+.+...+......+.+|++|.+ ..+....
T Consensus 90 d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~ 168 (585)
T PRK14950 90 DVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATIL 168 (585)
T ss_pred eEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHH
Confidence 10 0111122211 122221 34566899999875 34455565544433345666665544 3332211
Q ss_pred CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 000202 1123 DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTA 1177 (1866)
Q Consensus 1123 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g 1177 (1866)
.....+.++.++..+....+.+.+......- -.+.+..|++.++|.+..+...-
T Consensus 169 SR~~~i~f~~l~~~el~~~L~~~a~~egl~i-~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 169 SRCQRFDFHRHSVADMAAHLRKIAAAEGINL-EPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred hccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1235788999999988888877664322111 13456778999999886554433
|
|
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.027 Score=66.46 Aligned_cols=31 Identities=35% Similarity=0.475 Sum_probs=26.5
Q ss_pred CCcEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 207 AGVYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 207 ~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
.-.+.++|||.+|+|||.+|++++.+....|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~ 176 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP 176 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe
Confidence 3477899999999999999999999875543
|
|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.015 Score=73.45 Aligned_cols=153 Identities=17% Similarity=0.184 Sum_probs=83.2
Q ss_pred CCceeehhhHHHHHHhhh--------cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHH
Q 000202 186 KDLIGVEWRIKEIESLLR--------TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDD 257 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~--------~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 257 (1866)
.++.|.+...+.+..... .+-...+-|.++|++|+|||.+|+++++.....| +-.....
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~--------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGK--------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHH---------
Confidence 467787766655554211 1223356799999999999999999999764332 1111110
Q ss_pred HHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCHH--------------HHHHHhhccCCCCCCCEEEE
Q 000202 258 LRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPR--------------QIELLIGRLDRFASGSQVII 323 (1866)
Q Consensus 258 l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--------------~~~~l~~~~~~~~~gs~Iii 323 (1866)
+.....+.. .......+...-...+++|++|+++..- .+..++..+.....+.-||.
T Consensus 295 ----l~~~~vGes-----e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 295 ----LFGGIVGES-----ESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred ----hcccccChH-----HHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 111110000 0000112222224578999999997310 11222222222233444666
Q ss_pred Eccccchhcc-----CccceeeecCCCCHHHHHHHHHhhcCC
Q 000202 324 TTRDKQVLTN-----CEVDHIYQMKELVHADAHKLFTQCAFR 360 (1866)
Q Consensus 324 TTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 360 (1866)
||.+.+.+.. ...+..+.++..+.++-.++|..+..+
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 7765543221 123567889999999999999877643
|
|
| >KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.027 Score=72.63 Aligned_cols=177 Identities=18% Similarity=0.216 Sum_probs=106.8
Q ss_pred CCCceeehhhHHHHHH---hhhc-------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 185 SKDLIGVEWRIKEIES---LLRT-------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~---~L~~-------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
..++.|.++..++|.+ +|.. +..-++-|.++|++|+|||-||++++-+-. +=|+.+++.
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSGS------ 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSGS------ 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----CceeeechH------
Confidence 4578888876666555 4442 223366799999999999999999997532 224443332
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC-----------------HHHHHHHhhccCCCCC
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH-----------------PRQIELLIGRLDRFAS 317 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~-----------------~~~~~~l~~~~~~~~~ 317 (1866)
++.....+... ....+.....-.+.++.|.+|+++. ...++.++.....+..
T Consensus 379 ------EFvE~~~g~~a-----srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 ------EFVEMFVGVGA-----SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred ------HHHHHhcccch-----HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 11111111100 1111222223355678888888753 2236677777776666
Q ss_pred CCEEEE--EccccchhccC-----ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce
Q 000202 318 GSQVII--TTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 318 gs~Iii--TTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
+..||+ +|+..+++... ..+..+.++.-+..+..+.|..|+-+... ..+..++++ ++...-|++=|
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~-~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL-DDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC-CcchhhHHH-HHhcCCCCcHH
Confidence 554443 56666554332 22567788888889999999988843332 234556666 88888887744
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.02 Score=61.69 Aligned_cols=138 Identities=18% Similarity=0.189 Sum_probs=73.5
Q ss_pred eehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc--------------------ccceEEEEeeccc
Q 000202 190 GVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH--------------------FEGSYFACNVRAA 249 (1866)
Q Consensus 190 Gr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~--------------------f~~~~~~~~~~~~ 249 (1866)
|-+...+.|...+..+. -...+.++|..|+||+|+|.++++.+-.. ++...|+......
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc
Confidence 44566677777776542 35568899999999999999999854332 2222222110000
Q ss_pred cccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccc
Q 000202 250 EETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRD 327 (1866)
Q Consensus 250 ~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~ 327 (1866)
..-. .+-.+++...+... -..+++=++|+||++ +.+...+|+..+.....++++|++|++
T Consensus 80 -~~i~-i~~ir~i~~~~~~~----------------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 80 -KSIK-IDQIREIIEFLSLS----------------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp -SSBS-HHHHHHHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred -chhh-HHHHHHHHHHHHHH----------------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 0000 11111111111100 013456688999998 466778888887777789999999987
Q ss_pred cch-hccC-ccceeeecCCCC
Q 000202 328 KQV-LTNC-EVDHIYQMKELV 346 (1866)
Q Consensus 328 ~~v-~~~~-~~~~~~~l~~L~ 346 (1866)
..- +... .....+.+.+|+
T Consensus 142 ~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 142 PSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGGS-HHHHTTSEEEEE----
T ss_pred hHHChHHHHhhceEEecCCCC
Confidence 743 2211 123456666553
|
... |
| >KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.046 Score=65.57 Aligned_cols=171 Identities=16% Similarity=0.196 Sum_probs=98.1
Q ss_pred cCCCceeehhhHHHHHHhhhc--CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccc--eEEEEeeccccccccHHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRT--GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEG--SYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~--~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~ 259 (1866)
.+..++||+.++..+.+++.. +.+....+-|.|-+|.|||.+...++.+....... .+++.-. .-.....+.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~----sl~~~~aiF 223 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCT----SLTEASAIF 223 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeec----cccchHHHH
Confidence 346799999999999999874 23446678899999999999999999876665543 2444321 112224455
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHhhc-C-cEEEEEecCCCHH--HHHHHhhccCCC-CCCCEEEEEccc------c
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRLAR-K-KVLIVFDDVNHPR--QIELLIGRLDRF-ASGSQVIITTRD------K 328 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~-k-~~LlVlDdv~~~~--~~~~l~~~~~~~-~~gs~IiiTTR~------~ 328 (1866)
..++..+.........+......+.+.... + .+|+|+|.++... .-..+...+.|. -+++|+|+.--- +
T Consensus 224 ~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 555555532222111111111333333333 3 6899999987422 111121222221 346676654211 1
Q ss_pred chhccCc-----cceeeecCCCCHHHHHHHHHhhc
Q 000202 329 QVLTNCE-----VDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 329 ~v~~~~~-----~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
..+.... ....+..++-+.++-.+.|..+.
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 1111111 23567788999999999998765
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0019 Score=84.74 Aligned_cols=106 Identities=25% Similarity=0.202 Sum_probs=69.9
Q ss_pred CCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcc-cCCccccCCCCCcE
Q 000202 1395 SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLF-VLPPEVGSLECLEV 1473 (1866)
Q Consensus 1395 ~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~-~lP~~i~~L~~L~~ 1473 (1866)
.+|+|+.|.+.+-.....--...+.++++|+.||+|+|+++.+ ..+++|+||+.|.+++=.+.. .--..+-+|++|++
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 4677888877653222221234467788999999999988888 788899999998887644322 11124567888999
Q ss_pred EEccCCCCCcCChh-------hcCCCccceecccc
Q 000202 1474 LDLRGTEIKMLPKE-------IGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1474 L~l~~~~i~~lp~~-------i~~L~~L~~L~l~~ 1501 (1866)
||+|......-|.- -..|++|+.|++++
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 99987654433311 12377788887763
|
|
| >KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0096 Score=69.29 Aligned_cols=163 Identities=18% Similarity=0.268 Sum_probs=96.3
Q ss_pred CCCceeehhhHHHHHHhhhcCCCC-cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHH
Q 000202 185 SKDLIGVEWRIKEIESLLRTGSAG-VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELL 263 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~~~~~-~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 263 (1866)
.+.|-+|+.++..+..++...+.. ...|-|+|-.|.|||.+.+++++.... ..+|+.....+ ....+...++
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~~ecf----t~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNCVECF----TYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeehHHhc----cHHHHHHHHH
Confidence 357889999999999999866543 444589999999999999999987632 34687755442 3366777777
Q ss_pred HHHh-ccccccCccc--hhH----HHHHH--Hhh--cCcEEEEEecCCCHHHHHHH-----h---hccCCCCCCCEEEEE
Q 000202 264 SKLL-NDRNVKNFQN--ISV----NFQSK--RLA--RKKVLIVFDDVNHPRQIELL-----I---GRLDRFASGSQVIIT 324 (1866)
Q Consensus 264 ~~~~-~~~~~~~~~~--~~~----~~l~~--~L~--~k~~LlVlDdv~~~~~~~~l-----~---~~~~~~~~gs~IiiT 324 (1866)
.+.. ...+...... ... ..+.+ ... ++.++|||||++...+.++. . ..++ .+. -+|++
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~~-i~iil 154 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EPT-IVIIL 154 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CCc-eEEEE
Confidence 7774 2222111111 000 12222 122 45899999999865543321 1 1111 122 33444
Q ss_pred cccc---chhccCccc--eeeecCCCCHHHHHHHHHhh
Q 000202 325 TRDK---QVLTNCEVD--HIYQMKELVHADAHKLFTQC 357 (1866)
Q Consensus 325 TR~~---~v~~~~~~~--~~~~l~~L~~~ea~~Lf~~~ 357 (1866)
+--. .-...+|.. -++..+.-+.+|-.+++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 3322 112222332 34567788888888877643
|
|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.043 Score=68.19 Aligned_cols=178 Identities=11% Similarity=0.084 Sum_probs=96.3
Q ss_pred ccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCccc------ccccceEE-EEEecCCCCHHHHHH
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEV------KVMFHVII-WVTVSRYWNTRKIQK 1048 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~------~~~F~~~~-wv~vs~~~~~~~~~~ 1048 (1866)
+.+++|.+..++.+.+.+...... .+-++|+.|+||||+|+.+.+.-.- ...|...+ -+......+... .+
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~ 94 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IR 94 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HH
Confidence 345667777888888888765544 7889999999999999998542111 01121111 111111111111 11
Q ss_pred HHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEcc-CChhhhcc-CCC
Q 000202 1049 QVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMAS-RELDVCRN-MDV 1124 (1866)
Q Consensus 1049 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~-~~~ 1124 (1866)
.+.+++.. .-..+++-++++|++... ..++.+...+........+|++| ....+... ...
T Consensus 95 ~l~~~~~~----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr 158 (367)
T PRK14970 95 NLIDQVRI----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSR 158 (367)
T ss_pred HHHHHHhh----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhc
Confidence 22221110 012345557999998753 33555544333323345555554 33333221 112
Q ss_pred CcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHH
Q 000202 1125 NMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLL 1172 (1866)
Q Consensus 1125 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLA 1172 (1866)
...+++++++.++....+...+...... --.+.+..+++.++|.+-.
T Consensus 159 ~~~v~~~~~~~~~l~~~l~~~~~~~g~~-i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 159 CQIFDFKRITIKDIKEHLAGIAVKEGIK-FEDDALHIIAQKADGALRD 205 (367)
T ss_pred ceeEecCCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhCCCCHHH
Confidence 3578999999999888887765432211 1134566788888886643
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.064 Score=64.08 Aligned_cols=89 Identities=10% Similarity=0.125 Sum_probs=63.2
Q ss_pred cCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcccc-chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCC
Q 000202 289 RKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDK-QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHL 364 (1866)
Q Consensus 289 ~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 364 (1866)
+++=++|+|+++. .....+++..+....+++.+|++|.+. .++... .....+.+.+++.+++.+.+..... .
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~--~-- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS--A-- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc--c--
Confidence 4556788999984 566778888777767788888887765 344332 2356889999999999988876541 1
Q ss_pred ChhHHHHHHHHHHHhCCCcc
Q 000202 365 DAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 365 ~~~~~~~~~~i~~~~~GlPL 384 (1866)
. ...+..+++.++|.|+
T Consensus 182 ~---~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 182 E---ISEILTALRINYGRPL 198 (325)
T ss_pred C---hHHHHHHHHHcCCCHH
Confidence 1 1235667888999996
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.025 Score=68.59 Aligned_cols=132 Identities=16% Similarity=0.236 Sum_probs=79.6
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRL 287 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L 287 (1866)
....+.|||..|.|||.|+.++.+......+...++....+ .....+...+... ..+..++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se--------~f~~~~v~a~~~~---------~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE--------DFTNDFVKALRDN---------EMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH--------HHHHHHHHHHHhh---------hHHHHHHhh
Confidence 36689999999999999999999988877764444332221 2222232222211 112233434
Q ss_pred hcCcEEEEEecCCC----HHHHHHHhhccCC-CCCCCEEEEEccccc---------hhccCccceeeecCCCCHHHHHHH
Q 000202 288 ARKKVLIVFDDVNH----PRQIELLIGRLDR-FASGSQVIITTRDKQ---------VLTNCEVDHIYQMKELVHADAHKL 353 (1866)
Q Consensus 288 ~~k~~LlVlDdv~~----~~~~~~l~~~~~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L 353 (1866)
.-=++++||++- ...-+.+...+.. ...|-+||+|++... +.......-++++.+++.+.....
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 333788999963 1112233322221 133558999996542 222333456899999999999999
Q ss_pred HHhhc
Q 000202 354 FTQCA 358 (1866)
Q Consensus 354 f~~~a 358 (1866)
+.+.+
T Consensus 253 L~kka 257 (408)
T COG0593 253 LRKKA 257 (408)
T ss_pred HHHHH
Confidence 98866
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.053 Score=62.13 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=33.3
Q ss_pred HHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEE
Q 000202 195 IKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 243 (1866)
Q Consensus 195 l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (1866)
+..+.++...-..+...+.++|.+|+|||+||.++++.....-..++++
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3444444432222345789999999999999999999776554445554
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0075 Score=73.73 Aligned_cols=71 Identities=14% Similarity=0.226 Sum_probs=56.2
Q ss_pred cccccchhhHHHHHHHhhhhhhccCCceEEEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHH
Q 000202 682 NDLAVSERDLVHFINKVNYELLRDVNMVRILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAI 760 (1866)
Q Consensus 682 ~~~~g~~~d~~~li~~l~~~~~~~~~~l~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i 760 (1866)
..+++.+...+.++..+... ..|-+.|++|+|||++|+.+.+......+|+...||.++..+...+++..+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~ 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc
Confidence 35777778888887776532 467789999999999999998776556688899999999999888876443
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.015 Score=78.83 Aligned_cols=52 Identities=25% Similarity=0.302 Sum_probs=40.0
Q ss_pred CCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 185 SKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
.+++.|.+..++++.+++.. +-...+.|.++|.+|+|||+||+++++.....
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~ 239 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY 239 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe
Confidence 34688999999998887642 11234568999999999999999999876443
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.00053 Score=67.71 Aligned_cols=80 Identities=23% Similarity=0.308 Sum_probs=67.2
Q ss_pred hcCCCCcEEEccCCCCCCCChhhcCC-CCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCcccee
Q 000202 1419 ELMTSLKVLNLSKTRIKSLPETLVNL-KCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL 1497 (1866)
Q Consensus 1419 ~~l~~L~~L~Ls~~~i~~lp~~i~~L-~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L 1497 (1866)
....+|...+|++|.+.++|+.+... +.+.+|+|++|. +..+|..+..++.|+.|+++.|.+...|.-|..|.+|-.|
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 34567888899999999999887654 588999999988 5688999999999999999999999889888888888777
Q ss_pred cc
Q 000202 1498 TV 1499 (1866)
Q Consensus 1498 ~l 1499 (1866)
+.
T Consensus 129 ds 130 (177)
T KOG4579|consen 129 DS 130 (177)
T ss_pred cC
Confidence 65
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.045 Score=69.05 Aligned_cols=140 Identities=14% Similarity=0.169 Sum_probs=74.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccc---cccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHH-
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVK---VMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQV- 1074 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~- 1074 (1866)
.+-|.++|++|+|||++|+++++.-... ..+....|+.+..+. + +...... .......+.+..++.
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e----L----l~kyvGe--te~~ir~iF~~Ar~~a 285 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE----L----LNKYVGE--TERQIRLIFQRAREKA 285 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh----h----cccccch--HHHHHHHHHHHHHHHh
Confidence 3458899999999999999997643221 112233444443311 1 1000000 000011122222222
Q ss_pred hCCCcEEEEEeCCCCc---------cc-----hhhhcCCCCCC--CCCcEEEEccCChhhhc-----cCCCCcEEEecCC
Q 000202 1075 LNGEKFLLLLDDVWEQ---------ID-----LEAVGIPVPGS--ENGSKIFMASRELDVCR-----NMDVNMVVKLETL 1133 (1866)
Q Consensus 1075 L~~kr~LlVlDdv~~~---------~~-----~~~l~~~l~~~--~~gs~IivTTR~~~v~~-----~~~~~~~~~l~~L 1133 (1866)
-.+++++|+||+++.. .+ ...+...+... ..+..||.||...+... ....+..++++..
T Consensus 286 ~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~P 365 (512)
T TIGR03689 286 SDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERP 365 (512)
T ss_pred hcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCC
Confidence 2357899999999742 11 12232222221 13445666676554422 1234567999999
Q ss_pred ChHHHHHHHHHHhcC
Q 000202 1134 SMKDAWELFCKEVGG 1148 (1866)
Q Consensus 1134 ~~~~a~~Lf~~~~~~ 1148 (1866)
+.++..++|.++...
T Consensus 366 d~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 366 DAEAAADIFSKYLTD 380 (512)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999988754
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.023 Score=77.13 Aligned_cols=151 Identities=21% Similarity=0.280 Sum_probs=87.1
Q ss_pred CCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 186 KDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
.++.|.+...++|.+.+.. +-...+-|.++|.+|+|||+||+++++.....| +.....
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f-----i~v~~~------ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF-----IAVRGP------ 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE-----EEEehH------
Confidence 4577888887777776541 112345688999999999999999999765443 221111
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH--------------HHHHHHhhccCCC--CCC
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP--------------RQIELLIGRLDRF--ASG 318 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--------------~~~~~l~~~~~~~--~~g 318 (1866)
+++....+... ..........-+..+.+|+||+++.. ..+..++..+... ..+
T Consensus 522 ------~l~~~~vGese-----~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 ------EILSKWVGESE-----KAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred ------HHhhcccCcHH-----HHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 11111111110 01112222223456799999998631 1234444444322 234
Q ss_pred CEEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhc
Q 000202 319 SQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 319 s~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
.-||.||...+.+... ..+..+.++..+.++-.++|..+.
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~ 635 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHT 635 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHh
Confidence 4466677655443221 235678899999999999997665
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.013 Score=66.31 Aligned_cols=136 Identities=13% Similarity=0.196 Sum_probs=73.8
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHh-h-hccccceEEEEeeccccc-----cccH---
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNK-I-SRHFEGSYFACNVRAAEE-----TGRL--- 255 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~-~-~~~f~~~~~~~~~~~~~~-----~~~~--- 255 (1866)
..+.++......+..++.. ..+|.+.|.+|+|||+||.+++.+ + ...|...+...-.-+... +.+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 4567788888888877764 248999999999999999999884 3 344554333211111000 0011
Q ss_pred -HHHHHHHHH---HHhccccccC-----ccchhHHHHHHHhhcCc---EEEEEecCCC--HHHHHHHhhccCCCCCCCEE
Q 000202 256 -DDLRKELLS---KLLNDRNVKN-----FQNISVNFQSKRLARKK---VLIVFDDVNH--PRQIELLIGRLDRFASGSQV 321 (1866)
Q Consensus 256 -~~l~~~ll~---~~~~~~~~~~-----~~~~~~~~l~~~L~~k~---~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~I 321 (1866)
.-...-+.. .+.+...... ..... -.--.+++++. -+||+|.+.+ ..+...++.. .+.+|++
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Ie-i~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~ 206 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVE-IAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVTV 206 (262)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHhccCcEE-EecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCEE
Confidence 111111111 1111100000 00000 00112456654 4999999974 5667777655 4789999
Q ss_pred EEEccccc
Q 000202 322 IITTRDKQ 329 (1866)
Q Consensus 322 iiTTR~~~ 329 (1866)
|+|--..+
T Consensus 207 v~~GD~~Q 214 (262)
T PRK10536 207 IVNGDITQ 214 (262)
T ss_pred EEeCChhh
Confidence 99876543
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.056 Score=68.61 Aligned_cols=191 Identities=9% Similarity=-0.000 Sum_probs=100.9
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCccc--ccccceEEEEEecCCCCHHHHHHHHHH
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEV--KVMFHVIIWVTVSRYWNTRKIQKQVLR 1052 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~ 1052 (1866)
.+.+++|.+.-++.+...+...+.. ++-++|..|+||||+|+.+.+.-.- ...+. ++..-.-.+.+..
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~---------pC~~C~~C~~~~~ 82 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSST---------PCDTCIQCQSALE 82 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCC---------CCcccHHHHHHhh
Confidence 3445667777777777888666655 5579999999999999987532110 00000 0000001111100
Q ss_pred Hhcc-----CCCCccCHHHHHHHHHH----HhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCCh-hhhc
Q 000202 1053 QLSL-----HCKDRETDAQVAEKLWQ----VLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASREL-DVCR 1120 (1866)
Q Consensus 1053 ~l~~-----~~~~~~~~~~~~~~l~~----~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~ 1120 (1866)
.... +.......+++.+.+.. -..+++-++|+|++..- ...+.+...+......+++|++|.+. .+..
T Consensus 83 ~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~ 162 (535)
T PRK08451 83 NRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPA 162 (535)
T ss_pred cCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCch
Confidence 0000 00000112222222211 01245668899999753 34555555444334456767666553 2221
Q ss_pred cC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000202 1121 NM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1121 ~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
.. .-...+++.+++.++....+.+.+......- -.+.+..|++.++|.+--+..+
T Consensus 163 tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i-~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 163 TILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY-EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred HHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHH
Confidence 11 1136889999999998888876654321111 1345677999999988544433
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.025 Score=70.33 Aligned_cols=147 Identities=14% Similarity=0.245 Sum_probs=78.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHh-CC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVL-NG 1077 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~ 1077 (1866)
.+-|.++|.+|+|||++|+++++... .. |+.++. ..+. .... .........+.+.. ..
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~--~~-----~i~v~~----~~l~----~~~~------g~~~~~i~~~f~~a~~~ 223 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETN--AT-----FIRVVG----SELV----QKFI------GEGARLVRELFELAREK 223 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhC--CC-----EEEeeh----HHHh----Hhhc------cchHHHHHHHHHHHHhc
Confidence 45588999999999999999965322 11 222221 1111 1110 01111222222222 34
Q ss_pred CcEEEEEeCCCCcc------------c----hhhhcCCCCC--CCCCcEEEEccCChhhhcc-----CCCCcEEEecCCC
Q 000202 1078 EKFLLLLDDVWEQI------------D----LEAVGIPVPG--SENGSKIFMASRELDVCRN-----MDVNMVVKLETLS 1134 (1866)
Q Consensus 1078 kr~LlVlDdv~~~~------------~----~~~l~~~l~~--~~~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~ 1134 (1866)
...+|+|||++... + +..+...+.. ...+.+||.||...+.... ...+..+.++..+
T Consensus 224 ~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~ 303 (389)
T PRK03992 224 APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPD 303 (389)
T ss_pred CCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCC
Confidence 67899999997420 1 1111111111 1234567777775443221 1235689999999
Q ss_pred hHHHHHHHHHHhcCCCCC--chHHHHHHHHHHHcCCCh
Q 000202 1135 MKDAWELFCKEVGGIIQS--PDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1135 ~~~a~~Lf~~~~~~~~~~--~~~~~~~~~I~~~c~GlP 1170 (1866)
.++..++|..+....... -++ ..+++.+.|.-
T Consensus 304 ~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~s 337 (389)
T PRK03992 304 EEGRLEILKIHTRKMNLADDVDL----EELAELTEGAS 337 (389)
T ss_pred HHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCCC
Confidence 999999999877544322 223 33555666643
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.018 Score=72.49 Aligned_cols=156 Identities=15% Similarity=0.136 Sum_probs=88.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccc-eEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFH-VIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
...+.|+|..|+|||+|++++++.-.. .... .++|++. .++...+...+... .. ..+++.++.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~----~~f~~~~~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITS------EKFLNDLVDSMKEG-----KL----NEFREKYRK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHhcc-----cH----HHHHHHHHh
Confidence 345889999999999999999764321 1122 3456653 34555555555321 11 223333334
Q ss_pred CcEEEEEeCCCCc---cch-hhhcCCCCC-CCCCcEEEEccC-Chh--------hhccCCCCcEEEecCCChHHHHHHHH
Q 000202 1078 EKFLLLLDDVWEQ---IDL-EAVGIPVPG-SENGSKIFMASR-ELD--------VCRNMDVNMVVKLETLSMKDAWELFC 1143 (1866)
Q Consensus 1078 kr~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~IivTTR-~~~--------v~~~~~~~~~~~l~~L~~~~a~~Lf~ 1143 (1866)
+.-+|++||+... ..+ +.+...+.. ...|..||+||. ... +..++....++.+++.+.+.-..++.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 4568999999742 111 112111110 123456888775 322 12233445688999999999999998
Q ss_pred HHhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1144 KEVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1144 ~~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
+.+...... --+++..-|++.+.|.--
T Consensus 274 ~~~~~~~~~-l~~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 274 KMLEIEHGE-LPEEVLNFVAENVDDNLR 300 (440)
T ss_pred HHHHhcCCC-CCHHHHHHHHhccccCHH
Confidence 877532111 113456667777776543
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.021 Score=69.40 Aligned_cols=146 Identities=11% Similarity=0.106 Sum_probs=78.8
Q ss_pred ccccchhhHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+..+.|.++..+.+..++..... .++.++|.+|+||||+|+.+++.. .. ....++.+. .....+ +..+..+.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~--~~---~~~~i~~~~-~~~~~i-~~~l~~~~ 92 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV--GA---EVLFVNGSD-CRIDFV-RNRLTRFA 92 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh--Cc---cceEeccCc-ccHHHH-HHHHHHHH
Confidence 34566777778888888866554 456669999999999999996532 11 122344333 122111 11111110
Q ss_pred cCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc---cchhhhcCCCCCCCCCcEEEEccCChhhh-ccC-CCCcEEEe
Q 000202 1056 LHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ---IDLEAVGIPVPGSENGSKIFMASRELDVC-RNM-DVNMVVKL 1130 (1866)
Q Consensus 1056 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~IivTTR~~~v~-~~~-~~~~~~~l 1130 (1866)
. . ..+.+.+-+||+||+... ...+.+...+.....+.++|+||...... ... .....+.+
T Consensus 93 ~-------------~--~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~ 157 (316)
T PHA02544 93 S-------------T--VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDF 157 (316)
T ss_pred H-------------h--hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEe
Confidence 0 0 001234567889999753 22223332233334567888888654321 110 11135677
Q ss_pred cCCChHHHHHHHHH
Q 000202 1131 ETLSMKDAWELFCK 1144 (1866)
Q Consensus 1131 ~~L~~~~a~~Lf~~ 1144 (1866)
+..+.++..+++..
T Consensus 158 ~~p~~~~~~~il~~ 171 (316)
T PHA02544 158 GVPTKEEQIEMMKQ 171 (316)
T ss_pred CCCCHHHHHHHHHH
Confidence 77777777666543
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.014 Score=78.65 Aligned_cols=149 Identities=11% Similarity=0.154 Sum_probs=83.2
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCc---cccccc-ceEEEEEecCCCCHHHHHHHHHHHh
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYP---EVKVMF-HVIIWVTVSRYWNTRKIQKQVLRQL 1054 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~---~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l 1054 (1866)
.++||+++++.++..|......-+.++|.+|+|||++|+.+.+.- .+...+ +..+|.. +...+...
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~a~----- 252 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLLAG----- 252 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHhhh-----
Confidence 467899999999988866555567799999999999999995421 111112 3334321 11111110
Q ss_pred ccCCCCccCHHHHHHHHHHHh-CCCcEEEEEeCCCCcc----------c-hhhhcCCCCCCCCCc-EEEEccCChh----
Q 000202 1055 SLHCKDRETDAQVAEKLWQVL-NGEKFLLLLDDVWEQI----------D-LEAVGIPVPGSENGS-KIFMASRELD---- 1117 (1866)
Q Consensus 1055 ~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~----------~-~~~l~~~l~~~~~gs-~IivTTR~~~---- 1117 (1866)
..-..+.++....+.+.+ ..++.+|++|++.... + -+.++..+. .|. ++|-+|..++
T Consensus 253 ---~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt~~e~~~~ 326 (731)
T TIGR02639 253 ---TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTTYEEYKNH 326 (731)
T ss_pred ---ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecCHHHHHHH
Confidence 001112222333333333 3467999999997321 1 122332222 332 3444444322
Q ss_pred ------hhccCCCCcEEEecCCChHHHHHHHHHHh
Q 000202 1118 ------VCRNMDVNMVVKLETLSMKDAWELFCKEV 1146 (1866)
Q Consensus 1118 ------v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 1146 (1866)
+.+.+ ..+.++.++.++..+++....
T Consensus 327 ~~~d~al~rRf---~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 327 FEKDRALSRRF---QKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hhhhHHHHHhC---ceEEeCCCCHHHHHHHHHHHH
Confidence 12222 478999999999999988644
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.062 Score=63.63 Aligned_cols=131 Identities=13% Similarity=0.096 Sum_probs=68.9
Q ss_pred EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcE
Q 000202 1001 KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKF 1080 (1866)
Q Consensus 1001 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~ 1080 (1866)
.+.++|.+|+||||+|+.++......+.-...-|+.++. ..+ ........ .......+.+. ..-
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l----~~~~~g~~-----~~~~~~~l~~a---~gg 124 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDL----VGQYIGHT-----APKTKEVLKKA---MGG 124 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHH----HHHHhccc-----hHHHHHHHHHc---cCC
Confidence 477899999999999999955322111111112444442 122 22221111 11112222221 234
Q ss_pred EEEEeCCCCc-----------cchhhhcCCCCCCCCCcEEEEccCChhhhccC--------CCCcEEEecCCChHHHHHH
Q 000202 1081 LLLLDDVWEQ-----------IDLEAVGIPVPGSENGSKIFMASRELDVCRNM--------DVNMVVKLETLSMKDAWEL 1141 (1866)
Q Consensus 1081 LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~--------~~~~~~~l~~L~~~~a~~L 1141 (1866)
+|+||++... +..+.+...+.....+.+||+++....+.... .....+.+++++.++..++
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I 204 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQI 204 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHH
Confidence 8999999641 12233333333333456677777544331111 1245788999999998888
Q ss_pred HHHHhc
Q 000202 1142 FCKEVG 1147 (1866)
Q Consensus 1142 f~~~~~ 1147 (1866)
+.+.+.
T Consensus 205 ~~~~l~ 210 (287)
T CHL00181 205 AKIMLE 210 (287)
T ss_pred HHHHHH
Confidence 877653
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.021 Score=64.04 Aligned_cols=171 Identities=16% Similarity=0.205 Sum_probs=98.5
Q ss_pred cccCCCceeehhhHHHHHHhhhcC---CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTG---SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~---~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
|....+|||.+...+.+.-.+... ....--|.++|++|.||||||.-+++++..++... ++. .-....++
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~t-----sGp--~leK~gDl 94 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKIT-----SGP--ALEKPGDL 94 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEec-----ccc--cccChhhH
Confidence 445578999998888887776531 22344689999999999999999999886654311 010 00011111
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccC--------CCCCCCEE-------
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLD--------RFASGSQV------- 321 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~--------~~~~gs~I------- 321 (1866)
. .+...|+... .|.+|.+.. ...-+.+.+... ..++++|.
T Consensus 95 a----------------------aiLt~Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 95 A----------------------AILTNLEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred H----------------------HHHhcCCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 1 1111122222 345677753 111122222211 12444543
Q ss_pred ----EEEccccchhccCc--cceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 322 ----IITTRDKQVLTNCE--VDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 322 ----iiTTR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
=-|||--.+..-.. -..+.+++--+.+|-.+...+.|.. -..+-.++.+.+|+++..|-|-
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~--l~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI--LGIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH--hCCCCChHHHHHHHHhccCCcH
Confidence 24888654433221 1346678888888888888877721 1122235668899999999994
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.015 Score=68.26 Aligned_cols=131 Identities=12% Similarity=0.130 Sum_probs=64.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
...+.++|.+|+||||+|+.+++.-.....-....++.++.. ++... .- ........+.+.+. .
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~~~----~~-----g~~~~~~~~~~~~a-~-- 105 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLVGE----YI-----GHTAQKTREVIKKA-L-- 105 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhhhh----hc-----cchHHHHHHHHHhc-c--
Confidence 345789999999999999999542110010011122333221 11111 00 00111112222221 2
Q ss_pred cEEEEEeCCCCc----------cchhhhcCCCCCCCCCcEEEEccCChhh----------hccCCCCcEEEecCCChHHH
Q 000202 1079 KFLLLLDDVWEQ----------IDLEAVGIPVPGSENGSKIFMASRELDV----------CRNMDVNMVVKLETLSMKDA 1138 (1866)
Q Consensus 1079 r~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~IivTTR~~~v----------~~~~~~~~~~~l~~L~~~~a 1138 (1866)
..+|++|++... +..+.+...+......-.+|+++..... ...+ ...+.+++++.++-
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el 183 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEEL 183 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHH
Confidence 348899999742 1233343333333233345555443222 1222 34678899998888
Q ss_pred HHHHHHHhc
Q 000202 1139 WELFCKEVG 1147 (1866)
Q Consensus 1139 ~~Lf~~~~~ 1147 (1866)
.+++.+.+.
T Consensus 184 ~~Il~~~~~ 192 (261)
T TIGR02881 184 MEIAERMVK 192 (261)
T ss_pred HHHHHHHHH
Confidence 888876654
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.06 Score=69.48 Aligned_cols=194 Identities=9% Similarity=0.014 Sum_probs=102.3
Q ss_pred ccccchhhHHHHHHHHHhccCCccE-EEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTASK-IGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~v-i~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+.+++|.+..++.+.+++...+..- +.++|..|+||||+|+.+.+.-.-....+ ..+++.-...+.|...-+
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT-------ATPCGVCESCVALAPNGP 84 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-------CCcccccHHHHHhhcccC
Confidence 3456677777888888887766554 67999999999999999854211000000 001111111111111000
Q ss_pred -------cCCCCccCH---HHHHHHHHHH-hCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEcc-CChhhhcc
Q 000202 1056 -------LHCKDRETD---AQVAEKLWQV-LNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMAS-RELDVCRN 1121 (1866)
Q Consensus 1056 -------~~~~~~~~~---~~~~~~l~~~-L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~ 1121 (1866)
.+....... .++.+.+... ..+++-++|+|++.. ....+.+...+........+|++| ....+...
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~T 164 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPT 164 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHH
Confidence 000000111 1222222111 235566889999875 345666655554434455555544 44444322
Q ss_pred C-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH-HHHHHHH
Q 000202 1122 M-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL-LTIVTAK 1178 (1866)
Q Consensus 1122 ~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-Ai~~~g~ 1178 (1866)
. .-...|++..++.++..+.+.+.+......- -.+....|++.++|.+- |+..+-.
T Consensus 165 I~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i-~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 165 IRSRTHHYPFRLLPPRTMRALIARICEQEGVVV-DDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 1236899999999998888876554321111 12345668888999774 4434333
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.011 Score=68.77 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=22.0
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
..+.|+|.+|+|||+||.++++....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999886443
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.022 Score=71.00 Aligned_cols=148 Identities=22% Similarity=0.292 Sum_probs=86.8
Q ss_pred eehhhHHHHHHhhh-----------cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 190 GVEWRIKEIESLLR-----------TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 190 Gr~~~l~~l~~~L~-----------~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
|.++...+|.+... .+-+..+-|..+|+||+|||++|+++++.-...| +.+.+.
T Consensus 438 GlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nF-----lsvkgp---------- 502 (693)
T KOG0730|consen 438 GLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNF-----LSVKGP---------- 502 (693)
T ss_pred CHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCe-----eeccCH----------
Confidence 46555555654332 2334577899999999999999999999776665 322221
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-------------HHHHHHhhccCCCCCCCEEEE--
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-------------RQIELLIGRLDRFASGSQVII-- 323 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~~~gs~Iii-- 323 (1866)
++++...++.. ....+..++.-+--+.+|.||.++.. ..+..++..+........|+|
T Consensus 503 --EL~sk~vGeSE-----r~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViA 575 (693)
T KOG0730|consen 503 --ELFSKYVGESE-----RAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIA 575 (693)
T ss_pred --HHHHHhcCchH-----HHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEe
Confidence 33333333221 11112222223345688889988642 235556655555555545554
Q ss_pred -EccccchhccC----ccceeeecCCCCHHHHHHHHHhhcC
Q 000202 324 -TTRDKQVLTNC----EVDHIYQMKELVHADAHKLFTQCAF 359 (1866)
Q Consensus 324 -TTR~~~v~~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~ 359 (1866)
|-|...+-..+ ..+.++.++.-+.+--.++|+.++-
T Consensus 576 ATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 576 ATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK 616 (693)
T ss_pred ccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh
Confidence 33433332221 2367888888888888999998884
|
|
| >PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0039 Score=66.45 Aligned_cols=64 Identities=22% Similarity=0.394 Sum_probs=54.7
Q ss_pred cEEEcccccccc-CchHHHHHHHHhhC-CCceEeeC-CCC--CCCCCchhHHHHhhhcceEEEEeccCc
Q 000202 17 DVFLSFRGEDTR-DNFTSHLYSALCQN-NVETFIDN-DLK--RGDEIPESLLGTIEASTISIIIFSEKY 80 (1866)
Q Consensus 17 dvFis~~~~d~~-~~~~~~l~~~L~~~-g~~~~~d~-~~~--~g~~~~~~~~~~i~~s~~~i~v~S~~y 80 (1866)
-|||||++.... ...|..|+..|++. |+.|.+|. +.. .+..+..++.++++++...|+|+||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 399999885532 36789999999999 99999998 664 377899999999999999999999665
|
g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways []. |
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0064 Score=71.00 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=28.8
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhcc-ccceEEEE
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFAC 244 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 244 (1866)
...+.++|.+|+|||.||.++++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4568999999999999999999987665 34455654
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.069 Score=62.65 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=21.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.|.|.|.+|+|||+||+++++...
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 577999999999999999998553
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.025 Score=71.24 Aligned_cols=156 Identities=19% Similarity=0.154 Sum_probs=86.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCc
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEK 1079 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 1079 (1866)
..+.|+|..|+|||+|++++++.-.....=..+++++ ..++...+...+... .. ..+.+.+++ .
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~-----~~----~~~~~~~~~-~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN-----KM----EEFKEKYRS-V 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC-----CH----HHHHHHHHh-C
Confidence 4688999999999999999966432211112344554 334444555544321 12 223333433 2
Q ss_pred EEEEEeCCCCcc---ch-hhhcCCCCC-CCCCcEEEEccCCh-h--------hhccCCCCcEEEecCCChHHHHHHHHHH
Q 000202 1080 FLLLLDDVWEQI---DL-EAVGIPVPG-SENGSKIFMASREL-D--------VCRNMDVNMVVKLETLSMKDAWELFCKE 1145 (1866)
Q Consensus 1080 ~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~IivTTR~~-~--------v~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 1145 (1866)
-+|||||+.... .+ +.+...+.. ...|..||+|+... . +...+....++.+++.+.++-..++.+.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 378899997521 11 112211111 12345677777542 1 2233333457899999999999999887
Q ss_pred hcCCCCCchHHHHHHHHHHHcCCChHH
Q 000202 1146 VGGIIQSPDIHLYARAIVKGCCGLPLL 1172 (1866)
Q Consensus 1146 ~~~~~~~~~~~~~~~~I~~~c~GlPLA 1172 (1866)
+...... --++...-|++.+.|..-.
T Consensus 281 ~~~~~~~-l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 281 AEEEGLE-LPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHcCCC-CCHHHHHHHHHhcCCCHHH
Confidence 7543211 1134566677777776543
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.074 Score=67.21 Aligned_cols=175 Identities=10% Similarity=0.048 Sum_probs=95.6
Q ss_pred ccccchhhHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcCcccc---c------------------ccceEEE
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISYPEVK---V------------------MFHVIIW 1034 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~---~------------------~F~~~~w 1034 (1866)
+..++|.+..++.+.+.+...+. ..+-++|..|+||||+|+.+.+.-.-. . +++ ..+
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~ 94 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLE 94 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEE
Confidence 34566777777888888866655 457789999999999999885421110 0 111 111
Q ss_pred EEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHH-HHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEE
Q 000202 1035 VTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLW-QVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFM 1111 (1866)
Q Consensus 1035 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Iiv 1111 (1866)
+.-.....+.+ ..++.+.+. ....+.+-++|+|++... ...+.+...+.....+..+|+
T Consensus 95 i~g~~~~gid~------------------ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 95 IDGASHRGIED------------------IRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred eeccccCCHHH------------------HHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEE
Confidence 11000011111 111111111 112356678899998742 334445444443334556666
Q ss_pred ccCC-hhhhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1112 ASRE-LDVCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1112 TTR~-~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
+|.+ ..+.... .....+++++++.++....+.+.+...... --.+.+..|++.++|.+-
T Consensus 157 ~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~-i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 157 ATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE-TSREALLPIARAAQGSLR 217 (451)
T ss_pred EeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHH
Confidence 5543 3332221 123578999999999888777655322111 123456778899999664
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.021 Score=64.83 Aligned_cols=185 Identities=12% Similarity=0.041 Sum_probs=106.9
Q ss_pred CCcccccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEE-EEecCCCCHHHHHHHHHH
Q 000202 974 TSNVTAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIW-VTVSRYWNTRKIQKQVLR 1052 (1866)
Q Consensus 974 ~~~~~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~~~~i~~ 1052 (1866)
+..+.++.|.+..+..+.+.+.....+....+|++|.|||+-|..+...-.-.+.|.+++. .++|...... +.+.=
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K-- 108 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK-- 108 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh--
Confidence 3445556777778888888887767788999999999999998887543333455655442 2343322111 11100
Q ss_pred HhccCCCCccCHHHHHHHHHHHh--CCCc-EEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCChhhh-ccC-CCC
Q 000202 1053 QLSLHCKDRETDAQVAEKLWQVL--NGEK-FLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRELDVC-RNM-DVN 1125 (1866)
Q Consensus 1053 ~l~~~~~~~~~~~~~~~~l~~~L--~~kr-~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~~v~-~~~-~~~ 1125 (1866)
..+...+........ .-+. =.+|||+.++ .+.|..+...+......++.|+.|..-... ... .-.
T Consensus 109 --------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 109 --------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred --------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhH
Confidence 000000000000000 0122 3677899986 577998888776666667766555443321 111 112
Q ss_pred cEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh
Q 000202 1126 MVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1126 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 1170 (1866)
.-|..++|.+++...-+...+......- ..+..+.|++.++|--
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~-d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDI-DDDALKLIAKISDGDL 224 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCcH
Confidence 4678899999998888887774332221 1334667888888854
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.044 Score=70.04 Aligned_cols=154 Identities=12% Similarity=0.123 Sum_probs=86.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCc
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEK 1079 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 1079 (1866)
..+.|||..|+|||.|++++.+.......--.+++++ ..++..++...+... . ...+++.++. -
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~-----~----~~~f~~~y~~-~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG-----K----GDSFRRRYRE-M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc-----c----HHHHHHHhhc-C
Confidence 4588999999999999999976432211112334554 334444444433211 1 1223333433 2
Q ss_pred EEEEEeCCCCc---cchhh-hcCCCCC-CCCCcEEEEccCCh---------hhhccCCCCcEEEecCCChHHHHHHHHHH
Q 000202 1080 FLLLLDDVWEQ---IDLEA-VGIPVPG-SENGSKIFMASREL---------DVCRNMDVNMVVKLETLSMKDAWELFCKE 1145 (1866)
Q Consensus 1080 ~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 1145 (1866)
=+|||||+... ..|+. +...+.. ...|..|||||+.. .+...+....++.++..+.+.-..++.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 47889999753 22321 2111111 12356688888752 23444555678999999999999999987
Q ss_pred hcCCCCCchHHHHHHHHHHHcCCCh
Q 000202 1146 VGGIIQSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1146 ~~~~~~~~~~~~~~~~I~~~c~GlP 1170 (1866)
+...... --+++..-|++.+.+..
T Consensus 459 a~~r~l~-l~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 459 AVQEQLN-APPEVLEFIASRISRNI 482 (617)
T ss_pred HHhcCCC-CCHHHHHHHHHhccCCH
Confidence 7533211 11344555666655543
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.023 Score=63.59 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=41.0
Q ss_pred cccCCCceeehhhHHHHHHhhhc--CCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 182 QSESKDLIGVEWRIKEIESLLRT--GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~--~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
+...+.++|.+...+.|.+-... .+....-|.+||..|.|||++++++.++...+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 34556899999999887653321 12234567889999999999999999977654
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.032 Score=76.59 Aligned_cols=132 Identities=17% Similarity=0.240 Sum_probs=73.4
Q ss_pred CCceeehhhHHHHHHhhhcCC-------CCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 186 KDLIGVEWRIKEIESLLRTGS-------AGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~-------~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
..++|.+..++.+...+.... .....+.++|.+|+|||++|+.++......-...+.+. ..++...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d-~s~~~~~------ 637 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID-MSEYMEK------ 637 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe-chhhccc------
Confidence 468999999999988886421 12456889999999999999999986544322223332 2221110
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhc-CcEEEEEecCC--CHHHHHHHhhccCCC----C-------CCCEEEEE
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLAR-KKVLIVFDDVN--HPRQIELLIGRLDRF----A-------SGSQVIIT 324 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~--~~~~~~~l~~~~~~~----~-------~gs~IiiT 324 (1866)
.....+.+..+ ..........+...++. ...+|+||+++ +++.+..|+..+... + ..+-||+|
T Consensus 638 --~~~~~l~g~~~-g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 638 --HSVARLIGAPP-GYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred --chHHHhcCCCC-CccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 11122222221 11111111223333333 34589999998 456666666655322 1 23447777
Q ss_pred ccc
Q 000202 325 TRD 327 (1866)
Q Consensus 325 TR~ 327 (1866)
|.-
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 764
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.013 Score=61.58 Aligned_cols=89 Identities=18% Similarity=0.067 Sum_probs=47.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCc
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEK 1079 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 1079 (1866)
..+.|+|.+|+||||+++.+........ ..+++++.+........... ...................+....+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 4688999999999999999955322221 23455554443222222111 1111111112222223334444444444
Q ss_pred -EEEEEeCCCCccc
Q 000202 1080 -FLLLLDDVWEQID 1092 (1866)
Q Consensus 1080 -~LlVlDdv~~~~~ 1092 (1866)
.+|++|++.....
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 9999999987533
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.018 Score=65.28 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=28.4
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh----hccccceEEEE
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI----SRHFEGSYFAC 244 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~----~~~f~~~~~~~ 244 (1866)
-|+|.++|++|.|||+|.++++++. ...|..+..+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 5789999999999999999999943 34555555554
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.042 Score=71.82 Aligned_cols=172 Identities=13% Similarity=0.227 Sum_probs=94.8
Q ss_pred cccccchhhHHHHHHHHHhccCC---------ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHH
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVT---------ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKI 1046 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~---------~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 1046 (1866)
++.|.....+++.+++.++.... .+-|.++|++|+|||+||++++..... -++.++. .++
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~-------p~i~is~----s~f 252 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV-------PFFSISG----SEF 252 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CeeeccH----HHH
Confidence 34444444556677776664321 235889999999999999999653211 1233221 111
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc------------cc----hhhhcCCCCC--CCCCcE
Q 000202 1047 QKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ------------ID----LEAVGIPVPG--SENGSK 1108 (1866)
Q Consensus 1047 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~------------~~----~~~l~~~l~~--~~~gs~ 1108 (1866)
.... .+ .....+...+.+......++|+|||++.. .. +..+...+.. ...+-.
T Consensus 253 ~~~~---~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi 323 (638)
T CHL00176 253 VEMF---VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI 323 (638)
T ss_pred HHHh---hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee
Confidence 1100 00 01122233344455678899999999632 11 2223222221 223556
Q ss_pred EEEccCChhhhc-----cCCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCC
Q 000202 1109 IFMASRELDVCR-----NMDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGL 1169 (1866)
Q Consensus 1109 IivTTR~~~v~~-----~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl 1169 (1866)
||.||...+... ....+..+.+...+.++-.+++..++......+ ......+++.+.|.
T Consensus 324 VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGF 387 (638)
T ss_pred EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCC
Confidence 677776644322 123457889999999999999988776532222 22345577777773
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.1 Score=66.44 Aligned_cols=182 Identities=10% Similarity=-0.006 Sum_probs=97.5
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcc---ccc----------------ccceEEEE
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPE---VKV----------------MFHVIIWV 1035 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~---~~~----------------~F~~~~wv 1035 (1866)
.+..++|.+.-+..+.+++...+.+ .+.++|..|+||||+|+.+...-. ... .|.....+
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 3445667777778888888665544 456899999999999999843211 000 01111222
Q ss_pred EecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHH-HhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEc
Q 000202 1036 TVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQ-VLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMA 1112 (1866)
Q Consensus 1036 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivT 1112 (1866)
..+....+.. ...+.+.+.. -..+++-++|+|++... ...+.+...+........+|++
T Consensus 94 daas~~gvd~------------------ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~ 155 (486)
T PRK14953 94 DAASNRGIDD------------------IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILC 155 (486)
T ss_pred eCccCCCHHH------------------HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 1111111111 1111111111 12456679999998753 3455555444433344555555
Q ss_pred cCC-hhhhcc-CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000202 1113 SRE-LDVCRN-MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1113 TR~-~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
|.+ ..+... ......+.+.+++.++....+.+.+...... --.+.+..|+..++|.+..+...
T Consensus 156 tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~-id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 156 TTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE-YEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred ECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 533 333221 1112578999999999888777655322111 11234566888888876544433
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.011 Score=72.41 Aligned_cols=104 Identities=12% Similarity=0.135 Sum_probs=65.8
Q ss_pred chhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCC
Q 000202 981 NYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKD 1060 (1866)
Q Consensus 981 ~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 1060 (1866)
...++.++.+...+... ..|.++|++|+|||++|+.+++.......|+.+.||.+...++..++...+.- .+.....
T Consensus 178 ~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP-~~vgy~~ 254 (459)
T PRK11331 178 FIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP-NGVGFRR 254 (459)
T ss_pred cCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC-CCCCeEe
Confidence 34567788888887643 35778999999999999999765444456788889999988887766543210 0000000
Q ss_pred ccCHHHHHHHHHHHhC--CCcEEEEEeCCCC
Q 000202 1061 RETDAQVAEKLWQVLN--GEKFLLLLDDVWE 1089 (1866)
Q Consensus 1061 ~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~ 1089 (1866)
... -..+.+.+..+ +++++||+|++..
T Consensus 255 ~~G--~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 255 KDG--IFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred cCc--hHHHHHHHHHhcccCCcEEEEehhhc
Confidence 000 11222333322 4689999999975
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.14 Score=61.69 Aligned_cols=85 Identities=13% Similarity=0.173 Sum_probs=51.8
Q ss_pred cEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccccc-hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCCh
Q 000202 291 KVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDKQ-VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDA 366 (1866)
Q Consensus 291 ~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 366 (1866)
+=++|+|+++ +......++..+.....+..+|+||.+.. +.... .....+.+.+++.+++.+.+.... . ..
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~--~~ 188 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG---V--AE 188 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC---C--Cc
Confidence 3344568886 45555555555554445677888887764 33221 224678999999999988886542 1 11
Q ss_pred hHHHHHHHHHHHhCCCcce
Q 000202 367 GYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 367 ~~~~~~~~i~~~~~GlPLA 385 (1866)
. . ..+..++|-|+.
T Consensus 189 ~-~----~~l~~~~g~p~~ 202 (325)
T PRK08699 189 P-E----ERLAFHSGAPLF 202 (325)
T ss_pred H-H----HHHHHhCCChhh
Confidence 1 1 123568899964
|
|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0058 Score=68.89 Aligned_cols=34 Identities=24% Similarity=0.519 Sum_probs=28.7
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEE
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 243 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (1866)
-.++|.|..|+|||||...+.......|..++.+
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~ 47 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLI 47 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEE
Confidence 3578999999999999999999899999555444
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0085 Score=69.33 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=22.9
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
.-+.|+|.+|+|||+||.++.+.....
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 458999999999999999999865443
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.032 Score=71.11 Aligned_cols=156 Identities=19% Similarity=0.153 Sum_probs=88.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCccccccc--ceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMF--HVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLN 1076 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 1076 (1866)
...+.|+|..|+|||+|++++.+.- ...+ ..+++++. ..+...+...+... . ...+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~----~~~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYI--LEKNPNAKVVYVTS------EKFTNDFVNALRNN-----T----MEEFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----c----HHHHHHHHh
Confidence 3568899999999999999996542 2222 23445543 33444444444211 1 123334444
Q ss_pred CCcEEEEEeCCCCc---cch-hhhcCCCCC-CCCCcEEEEccCChh---------hhccCCCCcEEEecCCChHHHHHHH
Q 000202 1077 GEKFLLLLDDVWEQ---IDL-EAVGIPVPG-SENGSKIFMASRELD---------VCRNMDVNMVVKLETLSMKDAWELF 1142 (1866)
Q Consensus 1077 ~kr~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~IivTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~Lf 1142 (1866)
+.-+|||||+... ..+ +.+...+.. ...|..||+||.... +...+....++++++.+.++-..++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 2448889999642 111 122211110 123455777776431 2334444568999999999999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1143 CKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1143 ~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
.+.+..... .--+++..-|++.+.|..-.+
T Consensus 290 ~~~~~~~~~-~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 290 KKKAEEEGI-DLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHcCC-CCCHHHHHHHHcCcCCCHHHH
Confidence 988753211 112345667888888766543
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.086 Score=66.35 Aligned_cols=150 Identities=12% Similarity=0.147 Sum_probs=82.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCc
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEK 1079 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 1079 (1866)
..+.|+|..|+|||+|++++.+.-.. .-..+++++ ...+...+...+... . .+.+++.++ +.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~--~~~~v~yi~------~~~f~~~~~~~l~~~-----~----~~~f~~~~~-~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRE--SGGKILYVR------SELFTEHLVSAIRSG-----E----MQRFRQFYR-NV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEee------HHHHHHHHHHHHhcc-----h----HHHHHHHcc-cC
Confidence 56889999999999999999664322 112334554 234444554444321 1 123344443 34
Q ss_pred EEEEEeCCCCccc--h--hhhcCCCCC-CCCCcEEEEccCCh---------hhhccCCCCcEEEecCCChHHHHHHHHHH
Q 000202 1080 FLLLLDDVWEQID--L--EAVGIPVPG-SENGSKIFMASREL---------DVCRNMDVNMVVKLETLSMKDAWELFCKE 1145 (1866)
Q Consensus 1080 ~LlVlDdv~~~~~--~--~~l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 1145 (1866)
-+|++||+..... + +.+...+.. ...|..||+||... .+..++....++.+++++.++-..++.++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 4788899875321 1 122211110 11355688877542 22333444578999999999999999887
Q ss_pred hcCCCCCchHHHHHHHHHHHcCC
Q 000202 1146 VGGIIQSPDIHLYARAIVKGCCG 1168 (1866)
Q Consensus 1146 ~~~~~~~~~~~~~~~~I~~~c~G 1168 (1866)
+...... --+++..-|+..+.|
T Consensus 284 ~~~~~~~-l~~evl~~la~~~~~ 305 (445)
T PRK12422 284 AEALSIR-IEETALDFLIEALSS 305 (445)
T ss_pred HHHcCCC-CCHHHHHHHHHhcCC
Confidence 7432111 012334445555554
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.028 Score=67.68 Aligned_cols=126 Identities=18% Similarity=0.266 Sum_probs=74.3
Q ss_pred CCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHH-
Q 000202 207 AGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSK- 285 (1866)
Q Consensus 207 ~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~- 285 (1866)
.....+.+.|.+|+|||+||..++. ...|+ |+.....-+...--. ......+++
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FP---FvKiiSpe~miG~sE--------------------saKc~~i~k~ 590 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL--SSDFP---FVKIISPEDMIGLSE--------------------SAKCAHIKKI 590 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh--hcCCC---eEEEeChHHccCccH--------------------HHHHHHHHHH
Confidence 3466788999999999999999986 45677 343332210100000 000011222
Q ss_pred ---HhhcCcEEEEEecCCCHHH------------HHHHhhccCCCCC-CCE--EEEEccccchhccCcc----ceeeecC
Q 000202 286 ---RLARKKVLIVFDDVNHPRQ------------IELLIGRLDRFAS-GSQ--VIITTRDKQVLTNCEV----DHIYQMK 343 (1866)
Q Consensus 286 ---~L~~k~~LlVlDdv~~~~~------------~~~l~~~~~~~~~-gs~--IiiTTR~~~v~~~~~~----~~~~~l~ 343 (1866)
.-+..--.||+||++..-+ ++++...+....+ |-| |+-||-...++..++. ...|+|+
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 2244556899999975322 3444433333223 444 4457777888888764 4578999
Q ss_pred CCCH-HHHHHHHHhh
Q 000202 344 ELVH-ADAHKLFTQC 357 (1866)
Q Consensus 344 ~L~~-~ea~~Lf~~~ 357 (1866)
.++. ++..+.++..
T Consensus 671 nl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEEL 685 (744)
T ss_pred ccCchHHHHHHHHHc
Confidence 9988 6777777654
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.085 Score=69.02 Aligned_cols=193 Identities=7% Similarity=-0.024 Sum_probs=101.6
Q ss_pred ccccchhhHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+..+.|.++-+..+.+++...+. ..+-++|..|+||||+|+.+...-.-...... ...++..-...+.+.....
T Consensus 15 f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-----CCCCCcccHHHHHHhcCCC
Confidence 34456767777777777765543 46779999999999999999543211100000 0112222233333332221
Q ss_pred cCC-----CCccCHHHHHHHHHHH-----hCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCC-hhhhccC
Q 000202 1056 LHC-----KDRETDAQVAEKLWQV-----LNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRE-LDVCRNM 1122 (1866)
Q Consensus 1056 ~~~-----~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~ 1122 (1866)
.+. ......+++.+.+ +. ..+++-++|+|++.. ...++.+...+........+|++|.+ ..+....
T Consensus 90 ~D~~ei~~~~~~~vd~IReii-~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELI-ERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred ccEEEEeccccCCHHHHHHHH-HHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 110 0111122222211 11 135556889999985 34566665555433334555554443 3332221
Q ss_pred -CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000202 1123 -DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1123 -~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
.-...+++..++.++....+.+.+......- -.+.+..|++.++|.+..+..+
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i-s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI-EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 1135778889999888777776554321111 1234677889999987654433
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.027 Score=73.30 Aligned_cols=119 Identities=20% Similarity=0.280 Sum_probs=75.9
Q ss_pred CCceeehhhHHHHHHhhhcC-------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 186 KDLIGVEWRIKEIESLLRTG-------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~-------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
...+|-+..++.+.+.+... ..........|+.|||||.||++++..+-..=+.-+-++ .++ .+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D------MSE---y~ 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID------MSE---YM 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec------hHH---HH
Confidence 47899999999888877632 223556778999999999999999987643212222222 221 22
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhcCcE-EEEEecCC--CHHHHHHHhhccCC
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLARKKV-LIVFDDVN--HPRQIELLIGRLDR 314 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVlDdv~--~~~~~~~l~~~~~~ 314 (1866)
-+.-.+.+.+.++ ..........+-+..++++| +|.||.|+ +++.++.|+..+..
T Consensus 562 EkHsVSrLIGaPP-GYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 562 EKHSVSRLIGAPP-GYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred HHHHHHHHhCCCC-CCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 2334445555443 22222223456667788877 78899997 57778888777654
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.098 Score=68.47 Aligned_cols=179 Identities=8% Similarity=0.057 Sum_probs=100.9
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcc---c------------------ccccceEE
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPE---V------------------KVMFHVII 1033 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~---~------------------~~~F~~~~ 1033 (1866)
.+..++|.+..++.+.+++...+.. .+-++|..|+||||+|+.+...-. . ..+|+. .
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~ 93 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-H 93 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-E
Confidence 3445677777888888888766655 477999999999999988744211 0 012221 1
Q ss_pred EEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEE
Q 000202 1034 WVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFM 1111 (1866)
Q Consensus 1034 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Iiv 1111 (1866)
.+......++.++. +++.++... -..+.+=++|+|++..- ..++.+...+..-..++.+|+
T Consensus 94 ~ld~~~~~~vd~Ir-~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 94 ELDAASNNSVDDIR-NLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred EecccccCCHHHHH-HHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 12221111121111 111111100 01234557899998753 446666655544334566555
Q ss_pred -ccCChhhhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1112 -ASRELDVCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1112 -TTR~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
||+...+.... ....++++++++.++....+.+.+...... --.+.+..|+..++|..--+
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~-i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT-AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 44444443322 223679999999999988887765432211 11234677889999976433
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.003 Score=72.42 Aligned_cols=128 Identities=24% Similarity=0.211 Sum_probs=88.5
Q ss_pred ccCcEEEccCCCCCCCCC------CCCCCcccEEEccCCcCCcc---cChhHHhcCCCCcEEEccCCCCC-----CCChh
Q 000202 1375 THAKMIFFMDNDLQTLPG------RPSCPNLLTLFLQRNCRLRV---IPPSFFELMTSLKVLNLSKTRIK-----SLPET 1440 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~------~~~~~~L~~L~L~~~~~l~~---~p~~~~~~l~~L~~L~Ls~~~i~-----~lp~~ 1440 (1866)
+.|+++.+..|.+..-+. +..++.|..+.+++|..... +-..-+.++++|++|||.+|-++ .+-..
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 568888888888876552 34568899999988742211 11223578999999999999876 45567
Q ss_pred hcCCCCCcEEecccccCcccCCccc-----cCCCCCcEEEccCCCCC-----cCChhhcCCCccceeccccc
Q 000202 1441 LVNLKCLQILILRDCDFLFVLPPEV-----GSLECLEVLDLRGTEIK-----MLPKEIGKLTSLRYLTVFFF 1502 (1866)
Q Consensus 1441 i~~L~~L~~L~L~~~~~~~~lP~~i-----~~L~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~ 1502 (1866)
++.+++|+.|++++|.+...-...+ ...++|+.|.+.+|.|+ .+-..+...+.|..|++.++
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 8889999999999997654332222 23678999999998876 22233555667777766543
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.03 Score=76.42 Aligned_cols=119 Identities=19% Similarity=0.271 Sum_probs=66.6
Q ss_pred CCCceeehhhHHHHHHhhhcC-------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHH
Q 000202 185 SKDLIGVEWRIKEIESLLRTG-------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDD 257 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~~-------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 257 (1866)
...++|.+..++.+...+... .....++.++|..|+|||+||+++++.....-...+.+. ..++..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id-~se~~~------ 639 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID-MSEFME------ 639 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE-hHHhhh------
Confidence 346899999999988877632 112347889999999999999999986543322223222 122111
Q ss_pred HHHHHHHHHhccccccCccchhHHHHHHHhhc-CcEEEEEecCC--CHHHHHHHhhccC
Q 000202 258 LRKELLSKLLNDRNVKNFQNISVNFQSKRLAR-KKVLIVFDDVN--HPRQIELLIGRLD 313 (1866)
Q Consensus 258 l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~--~~~~~~~l~~~~~ 313 (1866)
......+.+..+ ..........+...++. ..-+|+||+++ +...+..++..+.
T Consensus 640 --~~~~~~LiG~~p-gy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile 695 (857)
T PRK10865 640 --KHSVSRLVGAPP-GYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLD 695 (857)
T ss_pred --hhhHHHHhCCCC-cccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHh
Confidence 111222222221 11111111223333333 33699999998 5666666666543
|
|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.033 Score=61.24 Aligned_cols=172 Identities=16% Similarity=0.179 Sum_probs=100.5
Q ss_pred CCceeehhhHHH---HHHhhhcC----CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 186 KDLIGVEWRIKE---IESLLRTG----SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 186 ~~~vGr~~~l~~---l~~~L~~~----~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
++.||.+..... |.+.|... .-..+-|..+|.+|.|||.+|++++++...-| +.+ .
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~-----l~v-k----------- 183 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL-----LLV-K----------- 183 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce-----EEe-c-----------
Confidence 578888766543 56666532 23467799999999999999999999754432 111 0
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--------------HHHHHHHhhccCC--CCCCCEEE
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--------------PRQIELLIGRLDR--FASGSQVI 322 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--------------~~~~~~l~~~~~~--~~~gs~Ii 322 (1866)
..+++.+..++.. ....+...+.-+--++.+.||.++- .+.+++++..+.. .+.|...|
T Consensus 184 at~liGehVGdga-----r~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 184 ATELIGEHVGDGA-----RRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred hHHHHHHHhhhHH-----HHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 1123222222211 0001222223345689999998863 3345666665543 23465666
Q ss_pred EEccccchhccC---ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 323 ITTRDKQVLTNC---EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 323 iTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
-.|.+..++... .-..-++..--+++|-.+++..++-.-.-+.. ...+.++++.+|+
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~---~~~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD---ADLRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc---cCHHHHHHHhCCC
Confidence 667666655432 22456777888899999999888732221111 1155677777773
|
|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.012 Score=64.33 Aligned_cols=35 Identities=31% Similarity=0.334 Sum_probs=25.6
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
.-+.++|.+|+|||.||.++++.....=-.+.|+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 45899999999999999999986555333345553
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.065 Score=65.96 Aligned_cols=95 Identities=17% Similarity=0.270 Sum_probs=60.6
Q ss_pred CCCceeehhhHHHHHHhhhc----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 185 SKDLIGVEWRIKEIESLLRT----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
..++=|.+..+.+|.+++.. +-...+-|.+||++|+|||.||++++.+..--| +.....
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~isAp------ 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LSISAP------ 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Eeecch------
Confidence 35678999999999887753 112356689999999999999999999764443 322211
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH 301 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~ 301 (1866)
++.+.+.++.. ....+...+.-..-++++++|+++-
T Consensus 258 ------eivSGvSGESE-----kkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ------EIVSGVSGESE-----KKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ------hhhcccCcccH-----HHHHHHHHHHhccCCeEEEeecccc
Confidence 23332222211 1111233333466789999999974
|
|
| >KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.13 Score=56.17 Aligned_cols=150 Identities=20% Similarity=0.317 Sum_probs=84.5
Q ss_pred Ccee-ehhhHHHHHHhhhcC-----------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 187 DLIG-VEWRIKEIESLLRTG-----------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 187 ~~vG-r~~~l~~l~~~L~~~-----------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
.+|| .+..++++.+.+... -...+-|.++|.+|.|||-||+++|+. ..+.|+.+++.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-----t~c~firvsgs------ 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-----TDCTFIRVSGS------ 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-----cceEEEEechH------
Confidence 4554 566777777665422 124566899999999999999999974 34455655443
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC-------------HH---HHHHHhhccCCC--C
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH-------------PR---QIELLIGRLDRF--A 316 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~-------------~~---~~~~l~~~~~~~--~ 316 (1866)
++..+..++.. ....+...-.-.+-+-.|..|.+++ .+ ..-.++..+..| .
T Consensus 216 ------elvqk~igegs-----rmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 216 ------ELVQKYIGEGS-----RMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred ------HHHHHHhhhhH-----HHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence 12222222111 0000111111234567788888764 11 122333344433 3
Q ss_pred CCCEEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhc
Q 000202 317 SGSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 317 ~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
+.-+||..|..-+++... ..+.-++.++-+++.-.+.++-+.
T Consensus 285 knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 285 KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 456788777655554322 235667888888887778777554
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0032 Score=68.16 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=27.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccc-cccceEEE
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVK-VMFHVIIW 1034 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~w 1034 (1866)
+.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999997655444 45777665
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.11 Score=68.04 Aligned_cols=188 Identities=10% Similarity=0.012 Sum_probs=97.1
Q ss_pred ccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccc---cceE-EEE-EecCCCCHHHHHHHH
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVM---FHVI-IWV-TVSRYWNTRKIQKQV 1050 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~---F~~~-~wv-~vs~~~~~~~~~~~i 1050 (1866)
+.+++|.+.-++.+.+++...+.. .+-++|+.|+||||+|+.+...---... +..+ .+. +....+++..
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie----- 91 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE----- 91 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE-----
Confidence 334667777777788888665544 5678999999999999998542110000 0000 000 0000000000
Q ss_pred HHHhccCC-CCccCHHHHHHHHHH-HhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEE-EccCChhhhcc-CCC
Q 000202 1051 LRQLSLHC-KDRETDAQVAEKLWQ-VLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIF-MASRELDVCRN-MDV 1124 (1866)
Q Consensus 1051 ~~~l~~~~-~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~Ii-vTTR~~~v~~~-~~~ 1124 (1866)
+.... ....+..++.+.+.. -..+++-++|+|++.. ...++.+...+........+| +||+...+... ..-
T Consensus 92 ---idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SR 168 (725)
T PRK07133 92 ---MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSR 168 (725)
T ss_pred ---EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhh
Confidence 00000 000111222222211 1235667889999875 345666655444333344544 45544444322 112
Q ss_pred CcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1125 NMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1125 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
...+++.+++.++....+...+....... ..+.+..|++.++|-+--+
T Consensus 169 cq~ieF~~L~~eeI~~~L~~il~kegI~i-d~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 169 VQRFNFRRISEDEIVSRLEFILEKENISY-EKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred ceeEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 35899999999998888876543221111 1234667889998876433
|
|
| >PRK12608 transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.023 Score=68.08 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=60.2
Q ss_pred HHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc-cceEEEEeeccccccccHHHHHHHHHHHHhccccccCc
Q 000202 197 EIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF-EGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNF 275 (1866)
Q Consensus 197 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~ 275 (1866)
.+.+.+..-..+ +.++|+|.+|+|||||++.+++.+..+. +..+++..+.+ ......++++.+...+.........
T Consensus 122 RvID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE--R~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 122 RVVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE--RPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hhhhheeecCCC-ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC--CCCCHHHHHHHHhhhEEeecCCCCH
Confidence 355555543323 4569999999999999999999877655 34344544554 3444567777776654432210111
Q ss_pred cc-hhH----HHHHHH--hhcCcEEEEEecCCC
Q 000202 276 QN-ISV----NFQSKR--LARKKVLIVFDDVNH 301 (1866)
Q Consensus 276 ~~-~~~----~~l~~~--L~~k~~LlVlDdv~~ 301 (1866)
.. ... ..+.++ -++++++||+|++..
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 11 111 111122 257999999999964
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.15 Score=65.86 Aligned_cols=191 Identities=11% Similarity=-0.001 Sum_probs=101.7
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHh
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQL 1054 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 1054 (1866)
.+.+++|.+.-++.+.+++...+.. .+-++|..|+||||+|+.+.+.-.-...... .+++.-...+.|...-
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-------~pC~~C~~C~~i~~~~ 86 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP-------MPCGECSSCKSIDNDN 86 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC-------CCCccchHHHHHHcCC
Confidence 3445677777788888888665554 5779999999999999998553211100000 0000000111111100
Q ss_pred cc-----CCCCccCHHHHHHHH---HH-HhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCC-hhhhccC
Q 000202 1055 SL-----HCKDRETDAQVAEKL---WQ-VLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRE-LDVCRNM 1122 (1866)
Q Consensus 1055 ~~-----~~~~~~~~~~~~~~l---~~-~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~ 1122 (1866)
.. +.......+++.+.+ .. -..+++-++|+|++..- ..++.+...+........+|.+|.+ ..+....
T Consensus 87 ~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 87 SLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHH
Confidence 00 000011122222111 11 12456668889998753 4566666665544445666655543 3332221
Q ss_pred -CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHH
Q 000202 1123 -DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTI 1174 (1866)
Q Consensus 1123 -~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~ 1174 (1866)
.-...+++++++.++..+.+.+.+..... +--.+.+..|++.++|.+-.+.
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~egi-~id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQI-KYEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 11356899999999888888766532211 1123456668888898775443
|
|
| >PF14516 AAA_35: AAA-like domain | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.23 Score=60.43 Aligned_cols=188 Identities=13% Similarity=0.123 Sum_probs=106.2
Q ss_pred HHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC-----CCHHHHHHHHHHHhccCCCC-
Q 000202 987 VRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY-----WNTRKIQKQVLRQLSLHCKD- 1060 (1866)
Q Consensus 987 ~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i~~~l~~~~~~- 1060 (1866)
-+++.+.+.+. ...+.|.|+-.+|||+|...+.+..+-. .+. ++++++..- .+...+++.++..+.....-
T Consensus 20 e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~~-~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~ 96 (331)
T PF14516_consen 20 EQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GYR-CVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLD 96 (331)
T ss_pred HHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CCE-EEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCC
Confidence 34455555543 3478999999999999998885433322 333 446665542 35666666655555432211
Q ss_pred ----------ccCHHHHHHHHHHHh---CCCcEEEEEeCCCCccc---h-hhhcCC----------CCCCCCCcEEEEcc
Q 000202 1061 ----------RETDAQVAEKLWQVL---NGEKFLLLLDDVWEQID---L-EAVGIP----------VPGSENGSKIFMAS 1113 (1866)
Q Consensus 1061 ----------~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~---~-~~l~~~----------l~~~~~gs~IivTT 1113 (1866)
..........+.+++ .+++.+|+||+|+..-. + +++... -+...+-+-|++.+
T Consensus 97 ~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~ 176 (331)
T PF14516_consen 97 EKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGS 176 (331)
T ss_pred hhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecC
Confidence 112223333444443 26899999999985321 1 111111 11111111233322
Q ss_pred CChhhh-cc----CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhhC
Q 000202 1114 RELDVC-RN----MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALAG 1182 (1866)
Q Consensus 1114 R~~~v~-~~----~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~ 1182 (1866)
....+. .. ......++|++++.+|...|..++-.. -.+ ...+.|...+||+|--+..++..+..
T Consensus 177 t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~---~~~~~l~~~tgGhP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 177 TEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQ---EQLEQLMDWTGGHPYLVQKACYLLVE 245 (331)
T ss_pred cccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCH---HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 221111 11 122357889999999999998775322 111 12778999999999988888888875
|
|
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.061 Score=66.61 Aligned_cols=46 Identities=22% Similarity=0.156 Sum_probs=38.6
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
..++||+..++.+...+..+. -|.|.|.+|+|||+||+.+......
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHhcc
Confidence 479999999999887776543 4889999999999999999986543
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.053 Score=66.67 Aligned_cols=129 Identities=21% Similarity=0.291 Sum_probs=81.5
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
..-|.+||++|+|||-||++++++-..+| +.+-+. +++....++.. ........+.-.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----isVKGP------------ELlNkYVGESE-----rAVR~vFqRAR~ 602 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----ISVKGP------------ELLNKYVGESE-----RAVRQVFQRARA 602 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----EeecCH------------HHHHHHhhhHH-----HHHHHHHHHhhc
Confidence 44588999999999999999999877766 332221 34444443322 111122233335
Q ss_pred cCcEEEEEecCCC-------------HHHHHHHhhccCCC--CCCCEEEEEccccchhccC-----ccceeeecCCCCHH
Q 000202 289 RKKVLIVFDDVNH-------------PRQIELLIGRLDRF--ASGSQVIITTRDKQVLTNC-----EVDHIYQMKELVHA 348 (1866)
Q Consensus 289 ~k~~LlVlDdv~~-------------~~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ 348 (1866)
.-+++|.||.++. ...+..|+..+... ..|.-||-.|..+++.... .-+.++-|+.-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 6799999999964 22455666655533 2355566666555553221 23567788999999
Q ss_pred HHHHHHHhhcC
Q 000202 349 DAHKLFTQCAF 359 (1866)
Q Consensus 349 ea~~Lf~~~a~ 359 (1866)
|-.+.++...-
T Consensus 683 eR~~ILK~~tk 693 (802)
T KOG0733|consen 683 ERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHhc
Confidence 99999987774
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.016 Score=60.16 Aligned_cols=21 Identities=43% Similarity=0.559 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHhcC
Q 000202 1002 IGVYGVGGIGKTAALKALISY 1022 (1866)
Q Consensus 1002 i~I~G~gGvGKTtLa~~v~~~ 1022 (1866)
|.|+|..|+||||+|+.+.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999664
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.025 Score=64.08 Aligned_cols=52 Identities=17% Similarity=0.090 Sum_probs=34.5
Q ss_pred cchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEE
Q 000202 980 VNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVII 1033 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~ 1033 (1866)
+.++.......+.++.+. ..|.+.|..|.|||+||.++..+.-..+.|+.++
T Consensus 57 i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 57 ILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred ccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 344455566666677553 4899999999999999999854322234455433
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.0037 Score=69.48 Aligned_cols=105 Identities=23% Similarity=0.253 Sum_probs=67.6
Q ss_pred CCCCcEEEccCCCCCCCChhhcCCCCCcEEecccc--cCcccCCccccCCCCCcEEEccCCCCCcCC--hhhcCCCccce
Q 000202 1421 MTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDC--DFLFVLPPEVGSLECLEVLDLRGTEIKMLP--KEIGKLTSLRY 1496 (1866)
Q Consensus 1421 l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~--~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp--~~i~~L~~L~~ 1496 (1866)
+..|+.|++.++.++++- .+-.|++|++|.++.| +....++-...++++|++|++++|.|+-+- ..+..+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 455666666666554331 2335778899999888 667777777777899999999999876421 23667778888
Q ss_pred eccccccccCCCccccCCCCCCChhhhhccccCcEeec
Q 000202 1497 LTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534 (1866)
Q Consensus 1497 L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l 1534 (1866)
|++++|...... ......+.-+++|..|+-
T Consensus 121 Ldl~n~~~~~l~--------dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 121 LDLFNCSVTNLD--------DYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhcccCCccccc--------cHHHHHHHHhhhhccccc
Confidence 888877543211 111223555677777663
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.033 Score=76.15 Aligned_cols=132 Identities=19% Similarity=0.246 Sum_probs=73.9
Q ss_pred CCceeehhhHHHHHHhhhcC-------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 186 KDLIGVEWRIKEIESLLRTG-------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~-------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
..++|-+..++.+...+... ......+.++|+.|+|||+||+++++.+...-...+-+. ..++.....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~~~~---- 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSEYMEKHT---- 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chhcccccc----
Confidence 57899999999988877521 112345678999999999999999987643322222222 222211111
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhcCc-EEEEEecCC--CHHHHHHHhhccCCC-----------CCCCEEEEE
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLARKK-VLIVFDDVN--HPRQIELLIGRLDRF-----------ASGSQVIIT 324 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~-~LlVlDdv~--~~~~~~~l~~~~~~~-----------~~gs~IiiT 324 (1866)
...+.+..+ ..........+.+.++.++ -+++||+++ +++.++.|+..+..+ -..+-||+|
T Consensus 584 ----~~~l~g~~~-gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 584 ----VSKLIGSPP-GYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred ----HHHhcCCCC-cccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 111112111 1111111123455555555 588999998 466667766665432 124456777
Q ss_pred ccc
Q 000202 325 TRD 327 (1866)
Q Consensus 325 TR~ 327 (1866)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 653
|
|
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.043 Score=68.66 Aligned_cols=178 Identities=20% Similarity=0.239 Sum_probs=106.3
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc----cc--ceEEEEeeccccccccHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH----FE--GSYFACNVRAAEETGRLDD 257 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~----f~--~~~~~~~~~~~~~~~~~~~ 257 (1866)
...++||-+.-.+.|...+..+. -..--...|.-|+||||+|+-++..+-.. .+ +.|..+
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C------------- 79 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC------------- 79 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh-------------
Confidence 34678999999999999988543 13334689999999999999999843211 11 011110
Q ss_pred HHHHHHHHHhccccccCcc---chhHHHHHHHh--------hcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEE
Q 000202 258 LRKELLSKLLNDRNVKNFQ---NISVNFQSKRL--------ARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIIT 324 (1866)
Q Consensus 258 l~~~ll~~~~~~~~~~~~~---~~~~~~l~~~L--------~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiT 324 (1866)
+.+-.. ...+..+++ +...+.+++.. +++.=+.|+|.|. +...+.+++..+....+....|+.
T Consensus 80 --k~I~~g--~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlA 155 (515)
T COG2812 80 --KEINEG--SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILA 155 (515)
T ss_pred --HhhhcC--CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEe
Confidence 111000 000101111 11112233222 3455578999997 677899999888766667777776
Q ss_pred ccccchhc-c-CccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCC
Q 000202 325 TRDKQVLT-N-CEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQG 381 (1866)
Q Consensus 325 TR~~~v~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G 381 (1866)
|.+.+-.. . ....+.|.++.++.++-...+...+-... ....++...-|++..+|
T Consensus 156 TTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~--I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 156 TTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEG--INIEEDALSLIARAAEG 212 (515)
T ss_pred cCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcC--CccCHHHHHHHHHHcCC
Confidence 66654322 1 13357899999999988888877663322 22234455666666666
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.013 Score=62.48 Aligned_cols=107 Identities=22% Similarity=0.267 Sum_probs=74.8
Q ss_pred CCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCC--hhhcCCCccceec
Q 000202 1421 MTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLP--KEIGKLTSLRYLT 1498 (1866)
Q Consensus 1421 l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~ 1498 (1866)
+.....+||++|.+..++ .+..+..|.+|.|++|.+...-|.--.-+++|..|.|.+|+|.++- ..+..+++|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 456778889999887665 3567888999999999877666655556778999999999988663 2367888999987
Q ss_pred cccccccCCCccccCCCCCCChhhhhccccCcEeeccc
Q 000202 1499 VFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDV 1536 (1866)
Q Consensus 1499 l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~ 1536 (1866)
+-...-... . ....-.+..+++|+.|+.+.
T Consensus 120 ll~Npv~~k------~--~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHK------K--NYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcc------c--CceeEEEEecCcceEeehhh
Confidence 743111000 0 00111367899999999764
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.14 Score=62.43 Aligned_cols=129 Identities=20% Similarity=0.240 Sum_probs=79.1
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccc--eEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHh
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFH--VIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVL 1075 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L 1075 (1866)
....+-|||..|.|||.|++++.+... .... .+++++ ........+..+.. .-.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~--~~~~~a~v~y~~------se~f~~~~v~a~~~---------~~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEAL--ANGPNARVVYLT------SEDFTNDFVKALRD---------NEMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHH--hhCCCceEEecc------HHHHHHHHHHHHHh---------hhHHHHHHhh
Confidence 356799999999999999999965332 2232 233333 33444444444322 1234455555
Q ss_pred CCCcEEEEEeCCCCc---cchhh----hcCCCCCCCCCcEEEEccCCh---------hhhccCCCCcEEEecCCChHHHH
Q 000202 1076 NGEKFLLLLDDVWEQ---IDLEA----VGIPVPGSENGSKIFMASREL---------DVCRNMDVNMVVKLETLSMKDAW 1139 (1866)
Q Consensus 1076 ~~kr~LlVlDdv~~~---~~~~~----l~~~l~~~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~ 1139 (1866)
.-=++++||++-. +.|+. +...+. ..|..||+|++.. .+..++....++.+.+++.+...
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHH
Confidence 3337889999752 22221 222222 2344899988543 33444555678999999999999
Q ss_pred HHHHHHhc
Q 000202 1140 ELFCKEVG 1147 (1866)
Q Consensus 1140 ~Lf~~~~~ 1147 (1866)
..+.+++.
T Consensus 251 aiL~kka~ 258 (408)
T COG0593 251 AILRKKAE 258 (408)
T ss_pred HHHHHHHH
Confidence 99988664
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.0037 Score=78.94 Aligned_cols=109 Identities=28% Similarity=0.329 Sum_probs=88.7
Q ss_pred ccccccCcEEEccCCCCCCCCC-CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcE
Q 000202 1371 EEEWTHAKMIFFMDNDLQTLPG-RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQI 1449 (1866)
Q Consensus 1371 ~~~~~~l~~l~l~~~~l~~l~~-~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~ 1449 (1866)
...++++..+++.+|.+..+.. +..+++|++|++++| .+..+.. +..++.|+.|++++|.|..++. +..+.+|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG--LSTLTLLKELNLSGNLISDISG-LESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc--hhhccchhhheeccCcchhccC-Cccchhhhc
Confidence 4567888999999999999988 888999999999988 5555543 2567889999999999987763 455999999
Q ss_pred EecccccCcccCCcc-ccCCCCCcEEEccCCCCCcC
Q 000202 1450 LILRDCDFLFVLPPE-VGSLECLEVLDLRGTEIKML 1484 (1866)
Q Consensus 1450 L~L~~~~~~~~lP~~-i~~L~~L~~L~l~~~~i~~l 1484 (1866)
|++++|.+...-+ . +..+.+|+.+.+.+|.+..+
T Consensus 167 l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 167 LDLSYNRIVDIEN-DELSELISLEELDLGGNSIREI 201 (414)
T ss_pred ccCCcchhhhhhh-hhhhhccchHHHhccCCchhcc
Confidence 9999998654433 2 57889999999999988755
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.14 Score=63.50 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=78.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+-|.++|.+|+|||+||+++++... ..| +.+.. ..+ ...... .....+.+.+.......
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l~--~~f-----i~i~~----s~l----~~k~~g-----e~~~~lr~lf~~A~~~~ 238 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHTT--ATF-----IRVVG----SEF----VQKYLG-----EGPRMVRDVFRLARENA 238 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcC--CCE-----EEEeh----HHH----HHHhcc-----hhHHHHHHHHHHHHhcC
Confidence 45688999999999999999965322 222 22211 111 111100 01112222233333567
Q ss_pred cEEEEEeCCCCcc------------c----hhhhcCCCCC--CCCCcEEEEccCChhhhc-----cCCCCcEEEecCCCh
Q 000202 1079 KFLLLLDDVWEQI------------D----LEAVGIPVPG--SENGSKIFMASRELDVCR-----NMDVNMVVKLETLSM 1135 (1866)
Q Consensus 1079 r~LlVlDdv~~~~------------~----~~~l~~~l~~--~~~gs~IivTTR~~~v~~-----~~~~~~~~~l~~L~~ 1135 (1866)
.++|+||+++... . +..+...+.. ...+-.||.||...+... ....+..+.+...+.
T Consensus 239 P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~ 318 (398)
T PTZ00454 239 PSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 318 (398)
T ss_pred CeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCH
Confidence 8999999986310 0 1112212211 123556788887654422 123456789999999
Q ss_pred HHHHHHHHHHhcCCCCC--chHHHHHHHHHHHcCCCh
Q 000202 1136 KDAWELFCKEVGGIIQS--PDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1136 ~~a~~Lf~~~~~~~~~~--~~~~~~~~~I~~~c~GlP 1170 (1866)
++..++|..+....... .++. .+++.+.|.-
T Consensus 319 ~~R~~Il~~~~~~~~l~~dvd~~----~la~~t~g~s 351 (398)
T PTZ00454 319 RQKRLIFQTITSKMNLSEEVDLE----DFVSRPEKIS 351 (398)
T ss_pred HHHHHHHHHHHhcCCCCcccCHH----HHHHHcCCCC
Confidence 99888888665433222 2333 3455555553
|
|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.1 Score=67.36 Aligned_cols=149 Identities=17% Similarity=0.212 Sum_probs=79.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCc
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEK 1079 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 1079 (1866)
+-+.++|++|+|||+||+.+.+.... . ++.++. .++... ... .....+...+........
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~--~-----~~~i~~----~~~~~~----~~g-----~~~~~l~~~f~~a~~~~p 148 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGV--P-----FFSISG----SDFVEM----FVG-----VGASRVRDLFEQAKKNAP 148 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC--C-----eeeccH----HHHHHH----Hhc-----ccHHHHHHHHHHHHhcCC
Confidence 34789999999999999999653221 1 222221 111111 100 111223333334445567
Q ss_pred EEEEEeCCCCcc------------ch----hhhcCCCCC--CCCCcEEEEccCChhh-----hccCCCCcEEEecCCChH
Q 000202 1080 FLLLLDDVWEQI------------DL----EAVGIPVPG--SENGSKIFMASRELDV-----CRNMDVNMVVKLETLSMK 1136 (1866)
Q Consensus 1080 ~LlVlDdv~~~~------------~~----~~l~~~l~~--~~~gs~IivTTR~~~v-----~~~~~~~~~~~l~~L~~~ 1136 (1866)
++|+||+++... .+ ..+...+.. ...+-.||.||..... .+....+..+.+...+.+
T Consensus 149 ~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~ 228 (495)
T TIGR01241 149 CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIK 228 (495)
T ss_pred CEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHH
Confidence 999999996420 11 112111211 1234456666665432 222234578899999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh
Q 000202 1137 DAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1137 ~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 1170 (1866)
+-.++|..+.......++. ....+++.+.|.-
T Consensus 229 ~R~~il~~~l~~~~~~~~~--~l~~la~~t~G~s 260 (495)
T TIGR01241 229 GREEILKVHAKNKKLAPDV--DLKAVARRTPGFS 260 (495)
T ss_pred HHHHHHHHHHhcCCCCcch--hHHHHHHhCCCCC
Confidence 9999998776543322211 1335777777743
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.036 Score=71.83 Aligned_cols=47 Identities=13% Similarity=0.287 Sum_probs=35.3
Q ss_pred CcccccchhhHHHHHHHHHhccC-----CccEEEEEcCCCchHHHHHHHHhc
Q 000202 975 SNVTAVNYTQRNVRKIFRYVNDV-----TASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 975 ~~~~~~~~~~~~~~~i~~~l~~~-----~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
..+.++.+.++.++++..++... ...++.++|..|+||||+++.+..
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34445667777777777777432 235699999999999999999964
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.14 Score=57.09 Aligned_cols=178 Identities=15% Similarity=0.137 Sum_probs=95.1
Q ss_pred CCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhH---HHH
Q 000202 207 AGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISV---NFQ 283 (1866)
Q Consensus 207 ~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~---~~l 283 (1866)
.+.+++.++|.-|.|||+++++.....-+. .++-+. ... ..-....+...+...+...+. ........ ..+
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d--~~~~v~-i~~--~~~s~~~~~~ai~~~l~~~p~-~~~~~~~e~~~~~L 122 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNED--QVAVVV-IDK--PTLSDATLLEAIVADLESQPK-VNVNAVLEQIDREL 122 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCC--ceEEEE-ecC--cchhHHHHHHHHHHHhccCcc-chhHHHHHHHHHHH
Confidence 456689999999999999999665544332 222222 111 222234555555555554222 11111111 112
Q ss_pred -HHHhhcCc-EEEEEecCCC--HHHHHHHhh---ccCCCCCCCEEEEEcccc-------chhccC-cccee-eecCCCCH
Q 000202 284 -SKRLARKK-VLIVFDDVNH--PRQIELLIG---RLDRFASGSQVIITTRDK-------QVLTNC-EVDHI-YQMKELVH 347 (1866)
Q Consensus 284 -~~~L~~k~-~LlVlDdv~~--~~~~~~l~~---~~~~~~~gs~IiiTTR~~-------~v~~~~-~~~~~-~~l~~L~~ 347 (1866)
...-++++ +.+++|+..+ .+.++.+.- .-..+..--+|+..-.-+ .+.... ....+ |++.|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 22236677 9999999974 334444332 222222222344433211 111111 12334 99999999
Q ss_pred HHHHHHHHhhcCCCCCCCh-hHHHHHHHHHHHhCCCcceeeeec
Q 000202 348 ADAHKLFTQCAFRGDHLDA-GYTELAHKALKYAQGVPLALKVLG 390 (1866)
Q Consensus 348 ~ea~~Lf~~~a~~~~~~~~-~~~~~~~~i~~~~~GlPLAl~~~g 390 (1866)
++...++..+..+...+.+ -..+....|.....|.|.++..++
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 9988888766543332222 224556778889999998876554
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.12 Score=64.77 Aligned_cols=73 Identities=26% Similarity=0.309 Sum_probs=45.0
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccc-ccccHHHHHHHHHHHHhccccccCccchhHHHHHHHh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAE-ETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRL 287 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L 287 (1866)
..-|.|.|..|+|||+||+++++.+...- .+++..+.... ....+..+++-+- ......+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~--~~hv~~v~Cs~l~~~~~e~iQk~l~-----------------~vfse~~ 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDL--IAHVEIVSCSTLDGSSLEKIQKFLN-----------------NVFSEAL 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhcccc--ceEEEEEechhccchhHHHHHHHHH-----------------HHHHHHH
Confidence 34588999999999999999999877543 33333222210 1112233333221 2333446
Q ss_pred hcCcEEEEEecCC
Q 000202 288 ARKKVLIVFDDVN 300 (1866)
Q Consensus 288 ~~k~~LlVlDdv~ 300 (1866)
...+-+|||||++
T Consensus 492 ~~~PSiIvLDdld 504 (952)
T KOG0735|consen 492 WYAPSIIVLDDLD 504 (952)
T ss_pred hhCCcEEEEcchh
Confidence 6778899999996
|
|
| >cd01394 radB RadB | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.044 Score=62.58 Aligned_cols=50 Identities=22% Similarity=0.205 Sum_probs=37.4
Q ss_pred HHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 195 IKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 195 l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
+..|..+|..+-..-.++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 5 i~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 5 CKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34456666544445678999999999999999999987655545566765
|
The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear. |
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.14 Score=61.70 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=60.7
Q ss_pred cCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEcccc-chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCC
Q 000202 289 RKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDK-QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHL 364 (1866)
Q Consensus 289 ~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 364 (1866)
+++=++|+|+++ +.+..+.++..+....+++.+|++|.+. .++... .....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 345578899998 5667888888887777788777666654 444332 234688999999999999887642 1
Q ss_pred ChhHHHHHHHHHHHhCCCccee
Q 000202 365 DAGYTELAHKALKYAQGVPLAL 386 (1866)
Q Consensus 365 ~~~~~~~~~~i~~~~~GlPLAl 386 (1866)
.+ ...++..++|.|+..
T Consensus 206 ~~-----~~~~l~~~~Gsp~~A 222 (342)
T PRK06964 206 AD-----ADALLAEAGGAPLAA 222 (342)
T ss_pred Ch-----HHHHHHHcCCCHHHH
Confidence 11 123577889999643
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.069 Score=65.35 Aligned_cols=146 Identities=16% Similarity=0.138 Sum_probs=83.2
Q ss_pred CceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc---------------------cceEEEEe
Q 000202 187 DLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF---------------------EGSYFACN 245 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~~~~~ 245 (1866)
.++|-+....++..+..........+.++|++|+||||+|.++++.+.... +....+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 356667777777777764443445689999999999999999999765432 12222211
Q ss_pred eccccccc-cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEE
Q 000202 246 VRAAEETG-RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVI 322 (1866)
Q Consensus 246 ~~~~~~~~-~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Ii 322 (1866)
... ... ...+..+++........ ..++.-++++|+++. .+...+++..+......+++|
T Consensus 82 s~~--~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 82 SDL--RKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred ccc--CCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEE
Confidence 111 000 01111222211111100 135677899999985 445667777776667788998
Q ss_pred EEcccc-chhccC-ccceeeecCCCCHHHH
Q 000202 323 ITTRDK-QVLTNC-EVDHIYQMKELVHADA 350 (1866)
Q Consensus 323 iTTR~~-~v~~~~-~~~~~~~l~~L~~~ea 350 (1866)
++|.+. .+.... .....+++.+.+..+.
T Consensus 144 l~~n~~~~il~tI~SRc~~i~f~~~~~~~~ 173 (325)
T COG0470 144 LITNDPSKILPTIRSRCQRIRFKPPSRLEA 173 (325)
T ss_pred EEcCChhhccchhhhcceeeecCCchHHHH
Confidence 888744 233211 2235566666444433
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.058 Score=64.78 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=28.0
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
..+.++|.+|+|||.||.++++.+...--.++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56899999999999999999997765544455554
|
|
| >PRK09361 radB DNA repair and recombination protein RadB; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.046 Score=62.78 Aligned_cols=50 Identities=22% Similarity=0.212 Sum_probs=38.2
Q ss_pred HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEe
Q 000202 196 KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACN 245 (1866)
Q Consensus 196 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 245 (1866)
..|-++|..+-..-.++.|+|.+|+|||++|.+++......-..++|+..
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 34555665444456789999999999999999999877666567788763
|
|
| >KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.081 Score=58.11 Aligned_cols=102 Identities=25% Similarity=0.340 Sum_probs=59.0
Q ss_pred CCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHH
Q 000202 207 AGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKR 286 (1866)
Q Consensus 207 ~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~ 286 (1866)
+..+-|.++|++|.|||-+|++++++. ..||+.+.+. ++.++..++.. .....+.+.
T Consensus 209 dppkgvllygppgtgktl~aravanrt-----dacfirvigs------------elvqkyvgega------rmvrelf~m 265 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVIGS------------ELVQKYVGEGA------RMVRELFEM 265 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeehhH------------HHHHHHhhhhH------HHHHHHHHH
Confidence 345668999999999999999999975 4567766554 23333322221 111223333
Q ss_pred hhc-CcEEEEEecCCC-------------HH---HHHHHhhccCCCCC--CCEEEEEccccchh
Q 000202 287 LAR-KKVLIVFDDVNH-------------PR---QIELLIGRLDRFAS--GSQVIITTRDKQVL 331 (1866)
Q Consensus 287 L~~-k~~LlVlDdv~~-------------~~---~~~~l~~~~~~~~~--gs~IiiTTR~~~v~ 331 (1866)
.+. |-++|.+|.++. .+ ..-.+...+..|.+ .-+|+..|..++.+
T Consensus 266 artkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtl 329 (435)
T KOG0729|consen 266 ARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329 (435)
T ss_pred hcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCc
Confidence 344 557888898752 11 12234444454544 34777777655443
|
|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.048 Score=67.84 Aligned_cols=131 Identities=16% Similarity=0.200 Sum_probs=71.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
..-|.++|.+|+|||++|+++++. ....| +.+..+. +.. .... .....+...+.....+.
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se------L~~----k~~G-----e~~~~vr~lF~~A~~~~ 276 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE------LIQ----KYLG-----DGPKLVRELFRVAEENA 276 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch------hhh----hhcc-----hHHHHHHHHHHHHHhCC
Confidence 345789999999999999999653 33233 1121111 111 1100 01111222222233457
Q ss_pred cEEEEEeCCCCcc------------c----hhhhcCCCCC--CCCCcEEEEccCChhhhcc-----CCCCcEEEecCCCh
Q 000202 1079 KFLLLLDDVWEQI------------D----LEAVGIPVPG--SENGSKIFMASRELDVCRN-----MDVNMVVKLETLSM 1135 (1866)
Q Consensus 1079 r~LlVlDdv~~~~------------~----~~~l~~~l~~--~~~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~ 1135 (1866)
.++|+||+++... . ...+...+.. ...+-+||.||...+.... ...+..+.+...+.
T Consensus 277 P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~ 356 (438)
T PTZ00361 277 PSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDE 356 (438)
T ss_pred CcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCH
Confidence 7899999975310 0 0111111111 1235678888876554322 12356889999999
Q ss_pred HHHHHHHHHHhcCC
Q 000202 1136 KDAWELFCKEVGGI 1149 (1866)
Q Consensus 1136 ~~a~~Lf~~~~~~~ 1149 (1866)
++..++|..+....
T Consensus 357 ~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 357 KTKRRIFEIHTSKM 370 (438)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998776543
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.1 Score=63.07 Aligned_cols=148 Identities=15% Similarity=0.207 Sum_probs=84.7
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
....+.+.|.+|+|||+||..+.. ...|..+--++ +.+.. +. .+...-..+.....+.-+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiS---pe~mi----------G~--sEsaKc~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIIS---PEDMI----------GL--SESAKCAHIKKIFEDAYKS 597 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeC---hHHcc----------Cc--cHHHHHHHHHHHHHHhhcC
Confidence 344566789999999999999843 34555322221 11110 00 0000011122223334455
Q ss_pred CcEEEEEeCCCCccchhhhcCCC---------------CCCCCCcEEEEccCChhhhccCCC----CcEEEecCCCh-HH
Q 000202 1078 EKFLLLLDDVWEQIDLEAVGIPV---------------PGSENGSKIFMASRELDVCRNMDV----NMVVKLETLSM-KD 1137 (1866)
Q Consensus 1078 kr~LlVlDdv~~~~~~~~l~~~l---------------~~~~~gs~IivTTR~~~v~~~~~~----~~~~~l~~L~~-~~ 1137 (1866)
.=-.||+||+....+|-.++..+ |..++.--|+-||....+...|+- ...|.|+.++. ++
T Consensus 598 ~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~ 677 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQ 677 (744)
T ss_pred cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHH
Confidence 66789999999888887766543 222233335557777888887763 46788999887 66
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHc
Q 000202 1138 AWELFCKEVGGIIQSPDIHLYARAIVKGC 1166 (1866)
Q Consensus 1138 a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c 1166 (1866)
..+.++..- ...+.+.+.++.+...+|
T Consensus 678 ~~~vl~~~n--~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 678 LLEVLEELN--IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHcc--CCCcchhHHHHHHHhccc
Confidence 766665432 112333455566666655
|
|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.09 Score=59.51 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=27.3
Q ss_pred EEEEEEcCCchhHHHHHHHHhcCccccccccceEEEE
Q 000202 710 RILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFS 746 (1866)
Q Consensus 710 ~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~ 746 (1866)
--+.|+|..|.||||++..+..+ ....|....+++
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEe
Confidence 35779999999999999988744 556786666664
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.0064 Score=65.80 Aligned_cols=34 Identities=24% Similarity=0.558 Sum_probs=28.6
Q ss_pred EEEEEcCCchhHHHHHHHHhcCcccc-ccccceEE
Q 000202 711 ILPISGMSGTGRTVLAQRVYSNKKVK-SHFPFRFW 744 (1866)
Q Consensus 711 Vi~IvG~gg~Gkttla~~v~~d~~v~-~~F~~~~w 744 (1866)
-|.|+|++|.||||+|+.+++.-.+. -+|+...|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 47899999999999999999886654 56887774
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.39 Score=54.01 Aligned_cols=121 Identities=17% Similarity=0.270 Sum_probs=64.1
Q ss_pred CcccccchhhHHHH-HHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHH
Q 000202 975 SNVTAVNYTQRNVR-KIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 975 ~~~~~~~~~~~~~~-~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 1053 (1866)
.+++|+...++.+. ....++......-+-+||..|.|||++++++.+...-++ . --|.|++.
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---L-RlIev~k~------------- 89 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG---L-RLIEVSKE------------- 89 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---c-eEEEECHH-------------
Confidence 34444443333222 223344555556688999999999999999965333222 1 12233321
Q ss_pred hccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCC---ccchhhhcCCCCCC----CCCcEEEEccCChhhhc
Q 000202 1054 LSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWE---QIDLEAVGIPVPGS----ENGSKIFMASRELDVCR 1120 (1866)
Q Consensus 1054 l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~~----~~gs~IivTTR~~~v~~ 1120 (1866)
+..+...+.+.++ -+..||+|.+||+.= ......++..+.++ ...-.|.+||...+..+
T Consensus 90 ------~L~~l~~l~~~l~--~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 90 ------DLGDLPELLDLLR--DRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred ------HhccHHHHHHHHh--cCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 1112222223232 145799999999862 33455555554432 22344556666666544
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.094 Score=62.99 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=24.5
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
...+|+++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36799999999999999999988866543
|
|
| >COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.35 Score=54.12 Aligned_cols=175 Identities=17% Similarity=0.216 Sum_probs=97.8
Q ss_pred cCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC-CCHHHHHHHHHHHhccCCCCccCHHHHHHH----
Q 000202 996 DVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY-WNTRKIQKQVLRQLSLHCKDRETDAQVAEK---- 1070 (1866)
Q Consensus 996 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~---- 1070 (1866)
..+.+++.++|.-|.|||++.+++... ..+ +.++=|.++.+ .+...+...|..++..+ ...........
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~--p~~~~~~~~e~~~~~ 121 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQ--PKVNVNAVLEQIDRE 121 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccC--ccchhHHHHHHHHHH
Confidence 344568999999999999999955221 111 11222444433 56777888888888763 23333333333
Q ss_pred HHHHh-CCCc-EEEEEeCCCCc--cchhhhcCC--CCC--CCCCcEEEEccCChhhhc--------cC--CCCcEEEecC
Q 000202 1071 LWQVL-NGEK-FLLLLDDVWEQ--IDLEAVGIP--VPG--SENGSKIFMASRELDVCR--------NM--DVNMVVKLET 1132 (1866)
Q Consensus 1071 l~~~L-~~kr-~LlVlDdv~~~--~~~~~l~~~--l~~--~~~gs~IivTTR~~~v~~--------~~--~~~~~~~l~~ 1132 (1866)
+.... +++| ..+++||.... ...+.++.. +.. ...=+++++- . +.+.. .. .....|.+.|
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~G-q-p~L~~~lr~~~l~e~~~R~~ir~~l~P 199 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIG-Q-PKLRPRLRLPVLRELEQRIDIRIELPP 199 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecC-C-cccchhhchHHHHhhhheEEEEEecCC
Confidence 33332 5777 89999998752 333333221 111 1111223332 1 11111 11 1122389999
Q ss_pred CChHHHHHHHHHHhcCCCCCch--HHHHHHHHHHHcCCChHHHHHHHH
Q 000202 1133 LSMKDAWELFCKEVGGIIQSPD--IHLYARAIVKGCCGLPLLTIVTAK 1178 (1866)
Q Consensus 1133 L~~~~a~~Lf~~~~~~~~~~~~--~~~~~~~I~~~c~GlPLAi~~~g~ 1178 (1866)
++.++.-.++..+..+...++. -.+....|.....|.|.+|..++.
T Consensus 200 ~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 200 LTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred cChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9999887777766644322221 233556688889999998876654
|
|
| >KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.063 Score=64.85 Aligned_cols=116 Identities=21% Similarity=0.290 Sum_probs=66.1
Q ss_pred CCceeehh---hHHHHHHhhhcCC-------CCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccH
Q 000202 186 KDLIGVEW---RIKEIESLLRTGS-------AGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRL 255 (1866)
Q Consensus 186 ~~~vGr~~---~l~~l~~~L~~~~-------~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 255 (1866)
++.-|.|+ +++++.++|.... .=.+-|.++|++|.|||-||++++-+..-- +|.....+|++..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP----FF~~sGSEFdEm~-- 377 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP----FFYASGSEFDEMF-- 377 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC----eEeccccchhhhh--
Confidence 35566665 4566666776432 226679999999999999999998754222 2443333322210
Q ss_pred HHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC-------------HHHHHHHhhccCCCCCCCEEE
Q 000202 256 DDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH-------------PRQIELLIGRLDRFASGSQVI 322 (1866)
Q Consensus 256 ~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~-------------~~~~~~l~~~~~~~~~gs~Ii 322 (1866)
.+... ....+.....-++-++.|.+|.++. ...+..++..+..|....-||
T Consensus 378 -----------VGvGA-----rRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiI 441 (752)
T KOG0734|consen 378 -----------VGVGA-----RRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGII 441 (752)
T ss_pred -----------hcccH-----HHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceE
Confidence 00000 0011222233356689999999864 123566777777666554454
Q ss_pred E
Q 000202 323 I 323 (1866)
Q Consensus 323 i 323 (1866)
|
T Consensus 442 v 442 (752)
T KOG0734|consen 442 V 442 (752)
T ss_pred E
Confidence 4
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.0045 Score=69.02 Aligned_cols=92 Identities=13% Similarity=0.090 Sum_probs=51.3
Q ss_pred cccccccccccccccccccccccc-cccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccCccccc
Q 000202 1690 PSLENLTLNHLWDLTCIWQGILPE-GSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYS 1768 (1866)
Q Consensus 1690 ~~L~~L~l~~~~~L~~~~~~~~~~-~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~ 1768 (1866)
+.+.+|++..|... .|...... ..||++..+.+..|| |++...+.+...+|.+-.|.+... ++.+.. ...
T Consensus 173 ~~v~tlh~~~c~~~--~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~-~idswa-----svD 243 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQ--LWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGAN-NIDSWA-----SVD 243 (418)
T ss_pred hhhhhhhcCCcHHH--HHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhccc-ccccHH-----HHH
Confidence 45556665555332 23222211 258999999998885 454444444444555555544432 222221 112
Q ss_pred cccCCCCcCEEeccCCcccccc
Q 000202 1769 SCIMLPSLKKLRLHHLPELANI 1790 (1866)
Q Consensus 1769 ~~~~lp~L~~L~L~~c~~L~~i 1790 (1866)
.+..||.|..|.+.+.|-+..+
T Consensus 244 ~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 244 ALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HHcCCchhheeeccCCcccccc
Confidence 3457899999999888866555
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.029 Score=61.98 Aligned_cols=126 Identities=19% Similarity=0.222 Sum_probs=58.7
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhh--hccccceEEEEeeccccccccH--HHHHHH-------
Q 000202 193 WRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKI--SRHFEGSYFACNVRAAEETGRL--DDLRKE------- 261 (1866)
Q Consensus 193 ~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~--~~~f~~~~~~~~~~~~~~~~~~--~~l~~~------- 261 (1866)
.+-....+.|. +..+|.+.|.+|.|||.||.+.+-+. ...|+..++....-+....-.+ .++-++
T Consensus 7 ~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p 82 (205)
T PF02562_consen 7 EEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRP 82 (205)
T ss_dssp HHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHH
T ss_pred HHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHH
Confidence 34444444444 34589999999999999999988632 4567777776543321111000 111111
Q ss_pred HHHHHhccccccCccchhHHHHH---------HHhhcC---cEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccc
Q 000202 262 LLSKLLNDRNVKNFQNISVNFQS---------KRLARK---KVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRD 327 (1866)
Q Consensus 262 ll~~~~~~~~~~~~~~~~~~~l~---------~~L~~k---~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~ 327 (1866)
+...+..-.. .......+. ..++++ ..+||+|++.+ .+++..++.. .+.||+||++--.
T Consensus 83 ~~d~l~~~~~----~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~ 155 (205)
T PF02562_consen 83 IYDALEELFG----KEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDP 155 (205)
T ss_dssp HHHHHTTTS-----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE--
T ss_pred HHHHHHHHhC----hHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCc
Confidence 1111110000 000001111 123443 57999999974 6688888665 4789999999765
Q ss_pred cc
Q 000202 328 KQ 329 (1866)
Q Consensus 328 ~~ 329 (1866)
.+
T Consensus 156 ~Q 157 (205)
T PF02562_consen 156 SQ 157 (205)
T ss_dssp --
T ss_pred ee
Confidence 43
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.041 Score=61.53 Aligned_cols=110 Identities=17% Similarity=0.167 Sum_probs=63.8
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEE-eeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC-NVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
.+|.|.|..|.||||++.++...+.......++.. +..+.... . ...+ ..............+.++..++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~----~-~~~~----i~q~~vg~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHE----S-KRSL----INQREVGLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccccc----C-ccce----eeecccCCCccCHHHHHHHHhc
Confidence 36899999999999999998887765544444432 21111000 0 0000 0000000011112356777787
Q ss_pred cCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccchh
Q 000202 289 RKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVL 331 (1866)
Q Consensus 289 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~ 331 (1866)
..+=.|++|.+.+.+.+....... ..|..++.|+-...+.
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 778899999999888776655442 3456677777655443
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.18 Score=58.08 Aligned_cols=173 Identities=18% Similarity=0.198 Sum_probs=90.4
Q ss_pred cCCCceeehhhHHHHHHhhhcC--CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc--HHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTG--SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR--LDDLR 259 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~--~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~--~~~l~ 259 (1866)
....|+|-.++-+++..++... -.+...|.|+|+.|.|||+|......+ ...|.-...++-....-..+. ...+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 3457999999999999998742 123446889999999999998876665 333433344433332112211 14444
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHhhc------CcEEEEEecCCC----HHH---HHHHhhccCCCCCCCEEEEEcc
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRLAR------KKVLIVFDDVNH----PRQ---IELLIGRLDRFASGSQVIITTR 326 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~------k~~LlVlDdv~~----~~~---~~~l~~~~~~~~~gs~IiiTTR 326 (1866)
+++..++.........-....+.+...|+. -++..|+|.++- ..| ...|-..-..-.|-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 444444332211111111112344444432 368889988863 111 1222222222345667788998
Q ss_pred ccc-------hhccCccceeeecCCCCHHHHHHHHHhh
Q 000202 327 DKQ-------VLTNCEVDHIYQMKELVHADAHKLFTQC 357 (1866)
Q Consensus 327 ~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 357 (1866)
-.- |-.......++-++.++-++-.+++++.
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~l 218 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKL 218 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHH
Confidence 542 2222222334445555555555555543
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.081 Score=63.09 Aligned_cols=98 Identities=16% Similarity=0.250 Sum_probs=54.5
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
.+-+.|+|..|+|||.||.++++.....-..+.|+.. ..+..++....... . ....+ +.++
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~----------~~l~~~lk~~~~~~-------~-~~~~l-~~l~ 216 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF----------PEFIRELKNSISDG-------S-VKEKI-DAVK 216 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH----------HHHHHHHHHHHhcC-------c-HHHHH-HHhc
Confidence 4568999999999999999999987654334555531 22333333322110 0 11122 2233
Q ss_pred cCcEEEEEecCCC--HHHHH--HHhhcc-C-CCCCCCEEEEEcc
Q 000202 289 RKKVLIVFDDVNH--PRQIE--LLIGRL-D-RFASGSQVIITTR 326 (1866)
Q Consensus 289 ~k~~LlVlDdv~~--~~~~~--~l~~~~-~-~~~~gs~IiiTTR 326 (1866)
+-=||||||+-. ...|. .++..+ . ....+-.+||||-
T Consensus 217 -~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 217 -EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred -CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 455889999942 23332 233322 1 1124567888885
|
|
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.12 Score=69.07 Aligned_cols=148 Identities=14% Similarity=0.132 Sum_probs=88.3
Q ss_pred cCCCchhHHHHHHHHhhhc-cccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEE
Q 000202 217 IGGIGKTTIAGAVFNKISR-HFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIV 295 (1866)
Q Consensus 217 ~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlV 295 (1866)
+.++||||+|.++++++-. .+...+.-.+... ... .+..+++......... . -..+.-++|
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd---~rg-id~IR~iIk~~a~~~~---~-----------~~~~~KVvI 635 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASD---ERG-INVIREKVKEFARTKP---I-----------GGASFKIIF 635 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCC---ccc-HHHHHHHHHHHHhcCC---c-----------CCCCCEEEE
Confidence 7799999999999997633 2322222222111 011 2233333333221111 0 012457999
Q ss_pred EecCCC--HHHHHHHhhccCCCCCCCEEEEEccccc-hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHH
Q 000202 296 FDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQ-VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTEL 371 (1866)
Q Consensus 296 lDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~ 371 (1866)
||+++. ..+..+|+..+......+++|++|.+.. +.... ....++++++++.++-.+.+.+.+-...- .-.++.
T Consensus 636 IDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi--~i~~e~ 713 (846)
T PRK04132 636 LDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEG 713 (846)
T ss_pred EECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC--CCCHHH
Confidence 999984 5577778777776667788887776553 22221 23578999999999988877765532211 112456
Q ss_pred HHHHHHHhCCCcc
Q 000202 372 AHKALKYAQGVPL 384 (1866)
Q Consensus 372 ~~~i~~~~~GlPL 384 (1866)
...|++.++|-+-
T Consensus 714 L~~Ia~~s~GDlR 726 (846)
T PRK04132 714 LQAILYIAEGDMR 726 (846)
T ss_pred HHHHHHHcCCCHH
Confidence 7889999999773
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.014 Score=59.68 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.3
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
+|+|.|++|+||||+|++++++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999875
|
... |
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.054 Score=61.45 Aligned_cols=45 Identities=24% Similarity=0.208 Sum_probs=35.2
Q ss_pred hhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEe
Q 000202 201 LLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACN 245 (1866)
Q Consensus 201 ~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 245 (1866)
+|..+-..-.++.|+|.+|+|||++|.+++......-..++|+..
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 444444456789999999999999999999876665667888864
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.084 Score=56.98 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=26.5
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
++.|+|.+|+||||+|..++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999987655434455554
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.014 Score=69.49 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=41.3
Q ss_pred CCceeehhhHHHHHHhhhcC----CCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 186 KDLIGVEWRIKEIESLLRTG----SAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~----~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+++|.++.++++.+++... +...++++++|++|+||||||.++++.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 37999999999999988742 23468899999999999999999998553
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.062 Score=59.72 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=27.0
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
+++|.++|+.|+||||.+..++.+...+-..+.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 368999999999999999999987666533344443
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.56 Score=56.96 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=44.5
Q ss_pred CcEEEEEecCCC-----------HHHHHHHhhccCCCCCCCEEEEEccccchhcc----C--ccceeeecCCCCHHHHHH
Q 000202 290 KKVLIVFDDVNH-----------PRQIELLIGRLDRFASGSQVIITTRDKQVLTN----C--EVDHIYQMKELVHADAHK 352 (1866)
Q Consensus 290 k~~LlVlDdv~~-----------~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~----~--~~~~~~~l~~L~~~ea~~ 352 (1866)
++-+||+||... ..+|.+.+.. .+=.+||++|-+...... . .+...+.+.-.+.+-|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 367899999853 1233333322 345689999987654332 2 235678899999999999
Q ss_pred HHHhhcC
Q 000202 353 LFTQCAF 359 (1866)
Q Consensus 353 Lf~~~a~ 359 (1866)
+...+.-
T Consensus 224 yV~~~L~ 230 (431)
T PF10443_consen 224 YVLSQLD 230 (431)
T ss_pred HHHHHhc
Confidence 9987764
|
It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA []. |
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.25 Score=59.24 Aligned_cols=192 Identities=12% Similarity=0.104 Sum_probs=100.8
Q ss_pred ccchhhHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcCc---cc----------ccccceEEEEEecCCCCHH
Q 000202 979 AVNYTQRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISYP---EV----------KVMFHVIIWVTVSRYWNTR 1044 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~---~~----------~~~F~~~~wv~vs~~~~~~ 1044 (1866)
.+.|.++.++.+.+.+...+. ...-++|..|+||+++|..+.+.- .. ...+....|+.-....+-.
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~ 84 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGK 84 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccccc
Confidence 355666777777777776664 578899999999999998774321 10 1122233444211000000
Q ss_pred HHHHHHHHHhcc--CCCCccCHHHHHHHHHHHh-----CCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCC
Q 000202 1045 KIQKQVLRQLSL--HCKDRETDAQVAEKLWQVL-----NGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRE 1115 (1866)
Q Consensus 1045 ~~~~~i~~~l~~--~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~ 1115 (1866)
.+...-+...+. .....-..++ +..+.+.+ .+.+-++|+|++..- ...+.+...+..-.++.-|++|++-
T Consensus 85 ~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~ 163 (314)
T PRK07399 85 LITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSP 163 (314)
T ss_pred ccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence 011111111110 0001111222 22333333 356678889998753 3444554444322233334444444
Q ss_pred hhhhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 000202 1116 LDVCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIV 1175 (1866)
Q Consensus 1116 ~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~ 1175 (1866)
+.+.... .-...+++.+++.++..+.+.+........ .....++..++|.|..+..
T Consensus 164 ~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~----~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 164 ESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN----INFPELLALAQGSPGAAIA 220 (314)
T ss_pred HhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch----hHHHHHHHHcCCCHHHHHH
Confidence 4443322 223688999999999999998764321111 1135688999999965544
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.046 Score=59.51 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 000202 1001 KIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1001 vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.|.|+|++|+||||||+.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999854
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.064 Score=58.42 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.6
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.|+|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998754
|
|
| >PRK12608 transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.077 Score=63.69 Aligned_cols=99 Identities=15% Similarity=0.179 Sum_probs=60.8
Q ss_pred HHHHhcc-CCccEEEEEcCCCchHHHHHHHHhcCcccccccce-EEEEEecC-CCCHHHHHHHHHHHhccCCCCccCHH-
Q 000202 990 IFRYVND-VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHV-IIWVTVSR-YWNTRKIQKQVLRQLSLHCKDRETDA- 1065 (1866)
Q Consensus 990 i~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~- 1065 (1866)
+++.+.- ..-..+.|+|..|+|||||++.+.+.-... +=+. ++|+.+.+ +..+.++.+.+...+.....+.....
T Consensus 123 vID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~ 201 (380)
T PRK12608 123 VVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEH 201 (380)
T ss_pred hhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHH
Confidence 4555521 233467999999999999999985422111 1123 45666554 46788999999887765443322221
Q ss_pred -H---HHHHHHHHh--CCCcEEEEEeCCCC
Q 000202 1066 -Q---VAEKLWQVL--NGEKFLLLLDDVWE 1089 (1866)
Q Consensus 1066 -~---~~~~l~~~L--~~kr~LlVlDdv~~ 1089 (1866)
. ....+.+++ ++++++||+|++..
T Consensus 202 ~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 202 IRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1 112222233 68999999999854
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.19 Score=65.60 Aligned_cols=191 Identities=9% Similarity=0.020 Sum_probs=96.4
Q ss_pred ccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+..++|.+.-++.+.+.+...+.. .+-++|..|+||||+|+.+.+.-.-....+ ..+++.-...+.|...-.
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 334667777777788888666654 567999999999999999854321111000 001111111111111000
Q ss_pred cC-----CCCccCHHHHHHHHHHH-----hCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEcc-CChhhhccC
Q 000202 1056 LH-----CKDRETDAQVAEKLWQV-----LNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMAS-RELDVCRNM 1122 (1866)
Q Consensus 1056 ~~-----~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~~ 1122 (1866)
.+ .......++. ..+.+. ..+++-++|+|++..- ...+.+...+........+|++| ....+....
T Consensus 88 ~d~~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 88 VDVFEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCeeeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 00 0000111111 112221 1345557889998753 34555554443333455665544 444443221
Q ss_pred -CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh-HHHHHH
Q 000202 1123 -DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLP-LLTIVT 1176 (1866)
Q Consensus 1123 -~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP-LAi~~~ 1176 (1866)
.-...+++++++.++....+...+......- -.+....|++.++|.. .|+..+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i-~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGISI-SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1235778889999888777766543221111 1234566888888865 344333
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.02 Score=58.79 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=26.1
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhcc-ccc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRH-FEG 239 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~-f~~ 239 (1866)
..-|+|.||+|+||||+++.+++.++.. |..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence 3458999999999999999999977765 643
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.075 Score=65.00 Aligned_cols=50 Identities=24% Similarity=0.287 Sum_probs=37.3
Q ss_pred HHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 195 IKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 195 l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
+.++.+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45566666544444568999999999999999999987766545566664
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.039 Score=61.26 Aligned_cols=111 Identities=16% Similarity=0.061 Sum_probs=58.6
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchh--HHHHHHHh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNIS--VNFQSKRL 287 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~--~~~l~~~L 287 (1866)
.++.|+|..|.||||+|..++.+...+...++++. . .++...... .+.+.+............. ...+++ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~-~~d~~~~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-P-AIDDRYGEG----KVVSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-c-cccccccCC----cEecCCCCcccceEeCChHHHHHHHHh-h
Confidence 36789999999999999999998766544444442 1 101111111 1222221111000000100 012222 2
Q ss_pred hcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 288 ARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 288 ~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
.++.-+||+|.+.- .+++..+...+. ..|..||+|.++.+
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 23556899999963 454554444322 35789999999854
|
|
| >COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.22 Score=54.78 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=42.7
Q ss_pred cccCCCceeehhhHHHHHHhhhc--CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccc
Q 000202 182 QSESKDLIGVEWRIKEIESLLRT--GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEG 239 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~--~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~ 239 (1866)
+.....++|.|...+.+.+--.. .+-...-|.+||--|.|||.|++++.+.+....-.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 34456799999888877653321 12234458899999999999999999988877654
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.23 Score=59.91 Aligned_cols=95 Identities=8% Similarity=0.057 Sum_probs=58.4
Q ss_pred CCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCChh-hhccCC-CCcEEEecCCChHHHHHHHHHHhcCCCCC
Q 000202 1077 GEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRELD-VCRNMD-VNMVVKLETLSMKDAWELFCKEVGGIIQS 1152 (1866)
Q Consensus 1077 ~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 1152 (1866)
+++-++|+|+++. ....+.+...+..-..++.+|+||.+.+ +..... -...+.+.+++.+++.+.+.+.....
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~--- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES--- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC---
Confidence 3344456799985 3445555554443335677777776653 332211 13678999999999998887654211
Q ss_pred chHHHHHHHHHHHcCCChHHHHHH
Q 000202 1153 PDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1153 ~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
..+.+..++..++|-|+.+..+
T Consensus 182 --~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 --DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --ChHHHHHHHHHcCCCHHHHHHH
Confidence 1233456788999999755443
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.37 Score=60.11 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=25.2
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
...+|.++|.+|+||||+|..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46789999999999999999999876654
|
|
| >PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.02 Score=59.93 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=33.3
Q ss_pred eeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 189 IGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 189 vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
||....++++.+.+..-......|.|+|..|+||+++|+.+++.-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 577777888877776543445578999999999999999888743
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.014 Score=65.14 Aligned_cols=39 Identities=33% Similarity=0.306 Sum_probs=22.7
Q ss_pred cCCCCCcEEEccCCCCCcCC----hhhcCCCccceeccccccc
Q 000202 1466 GSLECLEVLDLRGTEIKMLP----KEIGKLTSLRYLTVFFFGS 1504 (1866)
Q Consensus 1466 ~~L~~L~~L~l~~~~i~~lp----~~i~~L~~L~~L~l~~~~~ 1504 (1866)
..|.+|..|++..|..+.+- ..+.-+++|.+|+-..+..
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 34455666666666555432 1255677888887765543
|
|
| >KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.39 Score=52.55 Aligned_cols=149 Identities=20% Similarity=0.286 Sum_probs=79.7
Q ss_pred CceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccH
Q 000202 187 DLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRL 255 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 255 (1866)
+.=|.+-..+++.+.... +-+..+-|.++|++|.|||.||+++++.....| +.+++.
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f-----irvvgs------- 223 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF-----IRVVGS------- 223 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe-----eeeccH-------
Confidence 444566666666554431 224567799999999999999999999765544 444443
Q ss_pred HHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCHH----------------HHHHHhhccCCCC--C
Q 000202 256 DDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPR----------------QIELLIGRLDRFA--S 317 (1866)
Q Consensus 256 ~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~~--~ 317 (1866)
++..+.+++.+ .......+-.-.+-+-.|.+|.|+... .+-.++.....|. .
T Consensus 224 -----efvqkylgegp-----rmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~ 293 (408)
T KOG0727|consen 224 -----EFVQKYLGEGP-----RMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT 293 (408)
T ss_pred -----HHHHHHhccCc-----HHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCccc
Confidence 22333333332 111122222234567888899886411 1223333334333 3
Q ss_pred CCEEEEEccccchhcc-----CccceeeecCCCCHHHHHHHHHhh
Q 000202 318 GSQVIITTRDKQVLTN-----CEVDHIYQMKELVHADAHKLFTQC 357 (1866)
Q Consensus 318 gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~ 357 (1866)
..+||..|...+.+.- -..+.-++.+--+..+-.-.|...
T Consensus 294 nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~ti 338 (408)
T KOG0727|consen 294 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTI 338 (408)
T ss_pred ceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhh
Confidence 5577776654332211 112445666644555555555443
|
|
| >TIGR02902 spore_lonB ATP-dependent protease LonB | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.11 Score=67.18 Aligned_cols=46 Identities=30% Similarity=0.404 Sum_probs=37.5
Q ss_pred CCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHh
Q 000202 185 SKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
..+++|.+..++.+...+... ....|.|+|.+|+|||++|+.+++.
T Consensus 64 f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999998876543 3346789999999999999999874
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. |
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.098 Score=69.79 Aligned_cols=151 Identities=14% Similarity=0.189 Sum_probs=82.3
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCc---ccccc-cceEEEEEecCCCCHHHHHHHHHHHh
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYP---EVKVM-FHVIIWVTVSRYWNTRKIQKQVLRQL 1054 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~---~~~~~-F~~~~wv~vs~~~~~~~~~~~i~~~l 1054 (1866)
...||++++.+++..|......-+.++|.+|+|||++|+.++..- .+... .++.+|.. +...+ +
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l-------l 254 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL-------L 254 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH-------h
Confidence 356888999999998866544556799999999999999985421 11111 23444421 11111 1
Q ss_pred ccCCCCccCHHHHHHHHHHHh-CCCcEEEEEeCCCCc----------cchhhhcCCCCCCCCCcEEEEccCChh------
Q 000202 1055 SLHCKDRETDAQVAEKLWQVL-NGEKFLLLLDDVWEQ----------IDLEAVGIPVPGSENGSKIFMASRELD------ 1117 (1866)
Q Consensus 1055 ~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~IivTTR~~~------ 1117 (1866)
.. ..-..+.+.....+.+.+ +....+|++|++... .+...+..++...+ .-+||-+|....
T Consensus 255 aG-~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~~~~ 332 (758)
T PRK11034 255 AG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSNIFE 332 (758)
T ss_pred cc-cchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHHHhh
Confidence 00 011112222223333333 346789999999731 11222222222211 234444444333
Q ss_pred ----hhccCCCCcEEEecCCChHHHHHHHHHHh
Q 000202 1118 ----VCRNMDVNMVVKLETLSMKDAWELFCKEV 1146 (1866)
Q Consensus 1118 ----v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 1146 (1866)
+.+.+ ..+.++.++.++..+++....
T Consensus 333 ~D~AL~rRF---q~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 333 KDRALARRF---QKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred ccHHHHhhC---cEEEeCCCCHHHHHHHHHHHH
Confidence 22222 478999999999999987544
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.054 Score=60.54 Aligned_cols=86 Identities=28% Similarity=0.307 Sum_probs=0.0
Q ss_pred EEEEecCCCchhHHHHHHHHhhh-------------ccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccch
Q 000202 212 LGIWGIGGIGKTTIAGAVFNKIS-------------RHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNI 278 (1866)
Q Consensus 212 i~I~G~gGiGKTtLA~~~~~~~~-------------~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~ 278 (1866)
|.|+|.+|+||||||.++++++. .....+.|+. ..++...+-......
T Consensus 20 IlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid----------~~~Ll~~L~~a~~~~--------- 80 (226)
T PHA00729 20 AVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFE----------LPDALEKIQDAIDND--------- 80 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEE----------HHHHHHHHHHHHhcC---------
Q ss_pred hHHHHHHHhhcCcEEEEEec--------CCCHHHHHHHhhccCCCCCCCEEEEEcc
Q 000202 279 SVNFQSKRLARKKVLIVFDD--------VNHPRQIELLIGRLDRFASGSQVIITTR 326 (1866)
Q Consensus 279 ~~~~l~~~L~~k~~LlVlDd--------v~~~~~~~~l~~~~~~~~~gs~IiiTTR 326 (1866)
.+.=|||+|| .|..+....+....+-..+.+.+++.+|
T Consensus 81 ----------~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ 126 (226)
T PHA00729 81 ----------YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTT 126 (226)
T ss_pred ----------CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEec
|
|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.2 Score=67.46 Aligned_cols=52 Identities=23% Similarity=0.304 Sum_probs=40.9
Q ss_pred CCceeehhhHHHHHHhhhc----CCCCcEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 186 KDLIGVEWRIKEIESLLRT----GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~----~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
.+.+|.+...+.+.++|.. +.....++.++|.+|+||||+|+.++......|
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4689999988889888763 112345799999999999999999998665544
|
|
| >COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.11 Score=61.63 Aligned_cols=99 Identities=22% Similarity=0.234 Sum_probs=57.9
Q ss_pred hHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhc-cccc
Q 000202 194 RIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLN-DRNV 272 (1866)
Q Consensus 194 ~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~-~~~~ 272 (1866)
-+.++...|..+--.-.+|.|-|-+|||||||..+++.++..+- .+.|+. ++ ++....++. ...+.- ..+.
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs--GE--ES~~QiklR---A~RL~~~~~~l 149 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS--GE--ESLQQIKLR---ADRLGLPTNNL 149 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe--CC--cCHHHHHHH---HHHhCCCccce
Confidence 45666777764433355899999999999999999999988776 666764 33 221111111 122221 1111
Q ss_pred cCccchhHHHHHHHh-hcCcEEEEEecCC
Q 000202 273 KNFQNISVNFQSKRL-ARKKVLIVFDDVN 300 (1866)
Q Consensus 273 ~~~~~~~~~~l~~~L-~~k~~LlVlDdv~ 300 (1866)
.-......+.+.+.+ +.++-|+|+|-+.
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 112222233444444 4677899999885
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.12 Score=54.57 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
+|.+.|++|+||||+|+++.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987543
|
... |
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.098 Score=68.25 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=84.5
Q ss_pred CCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc-cc-----ceEEEEeeccccccccHHHH
Q 000202 185 SKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH-FE-----GSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~-f~-----~~~~~~~~~~~~~~~~~~~l 258 (1866)
.++.+||+.++..+.+.|.....+-. .++|.+|+|||++|.-++.++... -+ ..++-.+.+.
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~---------- 236 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGS---------- 236 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHH----------
Confidence 45799999999999999986543332 478999999999999999977543 11 1222111111
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC-----------HHHHHHHhhccCCCCCCCEEEEEccc
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH-----------PRQIELLIGRLDRFASGSQVIITTRD 327 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~-----------~~~~~~l~~~~~~~~~gs~IiiTTR~ 327 (1866)
-..+..-..+++......+.+.-+.+++.|++|.+.. .+.-+.+.+.+.. |.--.|=.||-+
T Consensus 237 ------LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT~~ 309 (786)
T COG0542 237 ------LVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATTLD 309 (786)
T ss_pred ------HhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEeccHH
Confidence 1111111112222222333333345589999999853 1122334444332 222234456654
Q ss_pred cch---hcc---CccceeeecCCCCHHHHHHHHHh
Q 000202 328 KQV---LTN---CEVDHIYQMKELVHADAHKLFTQ 356 (1866)
Q Consensus 328 ~~v---~~~---~~~~~~~~l~~L~~~ea~~Lf~~ 356 (1866)
+-- -+. ....+.+.|...+.+++...+..
T Consensus 310 EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 310 EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHH
Confidence 311 110 01245677888888888777763
|
|
| >PRK05541 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.054 Score=59.52 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=31.1
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
..+|.+.|+.|+||||+|+.++.++...+...+++.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 458999999999999999999998887777777763
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.072 Score=61.79 Aligned_cols=36 Identities=28% Similarity=0.252 Sum_probs=27.6
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEE
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 243 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (1866)
...-+.++|.+|+|||.||.++.+++...--.+.|+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~ 139 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI 139 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 344589999999999999999999887432334444
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.28 Score=59.95 Aligned_cols=25 Identities=28% Similarity=0.147 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..+++++|.+|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998754
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.43 Score=62.12 Aligned_cols=188 Identities=12% Similarity=0.017 Sum_probs=98.1
Q ss_pred ccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+..++|.+.-++.+.+++...+.+ .+-++|..|+||||+|+.+...-.-...- ...+++.-...+.|.....
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~-------~~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP-------DGEPCNECEICKAITNGSL 87 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-------CCCCCCccHHHHHHhcCCC
Confidence 335667777777788888655544 46789999999999999884321100000 0111222222222221111
Q ss_pred cC-----CCCccCHHHHHHHHHHH-----hCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEcc-CChhhhccC
Q 000202 1056 LH-----CKDRETDAQVAEKLWQV-----LNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMAS-RELDVCRNM 1122 (1866)
Q Consensus 1056 ~~-----~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~~ 1122 (1866)
.+ .......+++ ..+.+. ..+++-++|+|++.. ...+..+...+........+|++| ....+....
T Consensus 88 ~dv~eidaas~~~vd~i-r~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI 166 (559)
T PRK05563 88 MDVIEIDAASNNGVDEI-RDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATI 166 (559)
T ss_pred CCeEEeeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHH
Confidence 10 0001111111 122222 245666888999975 345666655444333344555444 433332221
Q ss_pred -CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1123 -DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1123 -~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
.....+++.+++.++....+...+......- -.+.+..|++.++|.+..+
T Consensus 167 ~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i-~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 167 LSRCQRFDFKRISVEDIVERLKYILDKEGIEY-EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HhHheEEecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 1135688899999988888876654221111 1244667888888877543
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.096 Score=61.44 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=25.1
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
..++|+++|.+|+||||++..++......
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999876554
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.058 Score=63.20 Aligned_cols=100 Identities=25% Similarity=0.265 Sum_probs=56.7
Q ss_pred EEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHHHHHHHHHHhh---hhhhhccCeEEEEEEccC
Q 000202 712 LPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSEIRRA---ENMADLSERLLVVLDDVC 788 (1866)
Q Consensus 712 i~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i~~~~~~~~~~---~~~~~~~~r~LlVlddv~ 788 (1866)
+=++|..|.|||.||..+++.-.-+ -...++++ ..+++..|...+...... .......+-=||||||+-
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg 188 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLG 188 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEeccc
Confidence 5689999999999999999764322 22345553 445666655544321110 111112222389999995
Q ss_pred CCChHHHH--HHHHhcccCCCCCcEEEEecCCh
Q 000202 789 DIDDEELH--NFRLLISNMRDSGSCFLVTTHSH 819 (1866)
Q Consensus 789 ~~~~~~w~--~~~~~l~~~~~~gs~iivttr~~ 819 (1866)
.+...+|. .+...+...-.+|..+|+||...
T Consensus 189 ~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 189 AERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 43333443 35544432223567788888653
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.11 Score=68.97 Aligned_cols=127 Identities=16% Similarity=0.183 Sum_probs=70.6
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLAR 289 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~ 289 (1866)
+-|.|+|.+|+|||++|+.++.+....| +..... .+... ..+.. .......+......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f-----~~is~~--------~~~~~----~~g~~-----~~~~~~~f~~a~~~ 243 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF-----FTISGS--------DFVEM----FVGVG-----ASRVRDMFEQAKKA 243 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE-----EEEehH--------HhHHh----hhccc-----HHHHHHHHHHHHhc
Confidence 3489999999999999999988765443 211111 01100 00000 00011222223345
Q ss_pred CcEEEEEecCCCH----------------HHHHHHhhccCCCCC--CCEEEEEccccchhccC-----ccceeeecCCCC
Q 000202 290 KKVLIVFDDVNHP----------------RQIELLIGRLDRFAS--GSQVIITTRDKQVLTNC-----EVDHIYQMKELV 346 (1866)
Q Consensus 290 k~~LlVlDdv~~~----------------~~~~~l~~~~~~~~~--gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~ 346 (1866)
.+++|+||+++.. ..+..++..+..+.. +.-||.||...+.+... ..+..+.++..+
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 6789999998653 123344433333322 34455577665543321 125677888888
Q ss_pred HHHHHHHHHhhc
Q 000202 347 HADAHKLFTQCA 358 (1866)
Q Consensus 347 ~~ea~~Lf~~~a 358 (1866)
.++-.+++..+.
T Consensus 324 ~~~R~~Il~~~~ 335 (644)
T PRK10733 324 VRGREQILKVHM 335 (644)
T ss_pred HHHHHHHHHHHh
Confidence 888888887766
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.14 Score=64.33 Aligned_cols=151 Identities=19% Similarity=0.147 Sum_probs=83.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC--CCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY--WNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
+-|-+.|..|+|||+||++++++.. +...-.+.+|+++.- ..+..+++.+- ..+.+.+..
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~-----------------~vfse~~~~ 493 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLN-----------------NVFSEALWY 493 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHH-----------------HHHHHHHhh
Confidence 4588999999999999999987666 444444556666542 33444444432 233455667
Q ss_pred CcEEEEEeCCCCc--------cchhh----hcCCC-----CCCCCCcEE--EEccCChhhhcc-----CCCCcEEEecCC
Q 000202 1078 EKFLLLLDDVWEQ--------IDLEA----VGIPV-----PGSENGSKI--FMASRELDVCRN-----MDVNMVVKLETL 1133 (1866)
Q Consensus 1078 kr~LlVlDdv~~~--------~~~~~----l~~~l-----~~~~~gs~I--ivTTR~~~v~~~-----~~~~~~~~l~~L 1133 (1866)
..-+|||||++.. .+|.. +...+ .....+.+| |.|..+..-... .-...+..+..+
T Consensus 494 ~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap 573 (952)
T KOG0735|consen 494 APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAP 573 (952)
T ss_pred CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCc
Confidence 7889999999631 22321 11111 012234443 333333222111 112346788888
Q ss_pred ChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCC
Q 000202 1134 SMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGL 1169 (1866)
Q Consensus 1134 ~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl 1169 (1866)
...+-.++++...........+.+ ..-+..+|+|.
T Consensus 574 ~~~~R~~IL~~~~s~~~~~~~~~d-Ld~ls~~TEGy 608 (952)
T KOG0735|consen 574 AVTRRKEILTTIFSKNLSDITMDD-LDFLSVKTEGY 608 (952)
T ss_pred chhHHHHHHHHHHHhhhhhhhhHH-HHHHHHhcCCc
Confidence 888877777665433321111222 22377788874
|
|
| >PRK06696 uridine kinase; Validated | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.033 Score=63.72 Aligned_cols=45 Identities=29% Similarity=0.328 Sum_probs=35.0
Q ss_pred ehhhHHHHHHhhhc-CCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 191 VEWRIKEIESLLRT-GSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 191 r~~~l~~l~~~L~~-~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
|...+++|.+.+.. ......+|+|.|.+|+||||||++++..+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 55666666666643 3446789999999999999999999987754
|
|
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.57 Score=59.77 Aligned_cols=189 Identities=21% Similarity=0.242 Sum_probs=98.1
Q ss_pred CceeehhhHHHHHHhhhc----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHH
Q 000202 187 DLIGVEWRIKEIESLLRT----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLD 256 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 256 (1866)
+.=|.++-..+|.+-+.. +-..+.-|.++|++|.|||-||++|+.+.+-.| +.+-+.
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lSVKGP-------- 739 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF-----LSVKGP-------- 739 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE-----EeecCH--------
Confidence 344555555556554432 222345689999999999999999998765544 332222
Q ss_pred HHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH---------------HHHHHHhhccCCCCC----
Q 000202 257 DLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP---------------RQIELLIGRLDRFAS---- 317 (1866)
Q Consensus 257 ~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---------------~~~~~l~~~~~~~~~---- 317 (1866)
+++....++.. ...++...+.-.-+++.|.||.+++. ..+..++..+.....
T Consensus 740 ----ELLNMYVGqSE-----~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~ 810 (953)
T KOG0736|consen 740 ----ELLNMYVGQSE-----ENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQ 810 (953)
T ss_pred ----HHHHHHhcchH-----HHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCC
Confidence 34444433322 11123333334568999999999861 123344444433222
Q ss_pred CCEEEEEccccchhccC-----ccceeeecCCCCHHHHHHH-HHh--hcCCCCCCChhHHHHHHHHHHHhCCCcceeeee
Q 000202 318 GSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKL-FTQ--CAFRGDHLDAGYTELAHKALKYAQGVPLALKVL 389 (1866)
Q Consensus 318 gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~L-f~~--~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~ 389 (1866)
+-=||=.|..++++... .-++.+.|++=+.+|+..= +.. +-|+-+ .+-+ ..+|+++|.- ..-
T Consensus 811 ~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLd-edVd----L~eiAk~cp~-----~~T 880 (953)
T KOG0736|consen 811 DVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLD-EDVD----LVEIAKKCPP-----NMT 880 (953)
T ss_pred ceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCC-CCcC----HHHHHhhCCc-----CCc
Confidence 22344444444443321 2256677877776665432 211 112111 1112 3556666653 234
Q ss_pred cccccCCCHHHHHHHHHH
Q 000202 390 GCYLCGRSKEEWESAMRK 407 (1866)
Q Consensus 390 g~~L~~~~~~~w~~~l~~ 407 (1866)
|+-|+.---+.|.+++.+
T Consensus 881 GADlYsLCSdA~l~AikR 898 (953)
T KOG0736|consen 881 GADLYSLCSDAMLAAIKR 898 (953)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 455554444667666654
|
|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.18 Score=68.72 Aligned_cols=51 Identities=25% Similarity=0.364 Sum_probs=39.1
Q ss_pred CceeehhhHHHHHHhhhc----CCCCcEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 187 DLIGVEWRIKEIESLLRT----GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~----~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
+.+|.+...+.+.+++.. +.....++.++|.+|+|||++|+.+++.+...|
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 577888888888776642 222334789999999999999999999875544
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.0065 Score=79.04 Aligned_cols=91 Identities=21% Similarity=0.175 Sum_probs=44.2
Q ss_pred cccCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhh
Q 000202 1660 YMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMI 1739 (1866)
Q Consensus 1660 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l 1739 (1866)
.+++|+.|+++.|..+...+-.. ....+++|+.|.+.+|..++..-...+ ...+|+|++|+|+.|..++.......+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~--l~~~c~~L~~L~l~~c~~lt~~gl~~i-~~~~~~L~~L~l~~c~~~~d~~l~~~~ 317 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSA--LASRCPNLETLSLSNCSNLTDEGLVSI-AERCPSLRELDLSGCHGLTDSGLEALL 317 (482)
T ss_pred hcCCcCccchhhhhccCchhHHH--HHhhCCCcceEccCCCCccchhHHHHH-HHhcCcccEEeeecCccchHHHHHHHH
Confidence 34666666666666544433221 122356666666666655443111011 114566777777777665443222234
Q ss_pred hhccccceeeeccc
Q 000202 1740 QFLAKLEELTVEYC 1753 (1866)
Q Consensus 1740 ~~L~sLe~L~I~~C 1753 (1866)
.++++|+.|.+..+
T Consensus 318 ~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 318 KNCPNLRELKLLSL 331 (482)
T ss_pred HhCcchhhhhhhhc
Confidence 44555555444433
|
|
| >PRK07667 uridine kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.062 Score=59.88 Aligned_cols=41 Identities=22% Similarity=0.409 Sum_probs=32.0
Q ss_pred HHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 195 IKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 195 l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
++++...+........+|||.|.+|+||||+|..+...+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34455556555556789999999999999999999987654
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.75 Score=53.73 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=51.3
Q ss_pred EEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHHHHHHHHHHhhhhhhhccCeEEEEEEccCCC
Q 000202 711 ILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSEIRRAENMADLSERLLVVLDDVCDI 790 (1866)
Q Consensus 711 Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~r~LlVlddv~~~ 790 (1866)
-+-++|+.|.|||.||..+-+.. .+......++. ..+++..+...............+.+-=||||||+-..
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~------~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~ 179 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTR------TTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYV 179 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeee------HHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccc
Confidence 37899999999999999887432 22222334443 33444444322111111111122234449999999643
Q ss_pred ChHHH--HHHHHhcccCCCCCcEEEEecCC
Q 000202 791 DDEEL--HNFRLLISNMRDSGSCFLVTTHS 818 (1866)
Q Consensus 791 ~~~~w--~~~~~~l~~~~~~gs~iivttr~ 818 (1866)
...+| ..+...+...-.++ .+|+||..
T Consensus 180 ~~~~~~~~~Lf~lin~R~~~~-s~IiTSN~ 208 (269)
T PRK08181 180 TKDQAETSVLFELISARYERR-SILITANQ 208 (269)
T ss_pred cCCHHHHHHHHHHHHHHHhCC-CEEEEcCC
Confidence 32222 23444443222234 47777764
|
|
| >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.091 Score=63.71 Aligned_cols=46 Identities=22% Similarity=0.173 Sum_probs=38.7
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHH
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFN 231 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~ 231 (1866)
+.++|....+.++.+.+..-......|.|+|..|+||+++|+.+..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 4699999999998888875444455689999999999999999875
|
|
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.6 Score=52.71 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=36.9
Q ss_pred CCceeehhhHHHHHHhhh----------cCCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 186 KDLIGVEWRIKEIESLLR----------TGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~----------~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+..|.+...+.|.+..- ......+-|.++|++|.||+-||++|+.+.-
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 467788887777776442 1223367799999999999999999998653
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.48 Score=57.13 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=24.8
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
..++|+|+|.+|+||||++..++.....+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 35789999999999999999999866543
|
|
| >KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.11 Score=57.96 Aligned_cols=54 Identities=33% Similarity=0.392 Sum_probs=41.4
Q ss_pred CCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhcccc
Q 000202 185 SKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFE 238 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (1866)
..+.=|-+..+++|.+.... +-...+-|.++|.+|.|||-||++|+|+.+..|-
T Consensus 184 y~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFl 248 (440)
T KOG0726|consen 184 YADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFL 248 (440)
T ss_pred hcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhh
Confidence 34566788888888876642 1234566889999999999999999998777663
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.13 Score=54.17 Aligned_cols=103 Identities=19% Similarity=0.192 Sum_probs=56.6
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
-.+++|.|..|.|||||++.++..... ..+.+++........... ........-.+.+.+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~~~~~------------------lS~G~~~rv~laral~ 86 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIGYFEQ------------------LSGGEKMRLALAKLLL 86 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEEEEcc------------------CCHHHHHHHHHHHHHh
Confidence 347999999999999999999875432 345555532111000000 0011112233445566
Q ss_pred cCcEEEEEecCC---CHHHHHHHhhccCCCCCCCEEEEEccccchhc
Q 000202 289 RKKVLIVFDDVN---HPRQIELLIGRLDRFASGSQVIITTRDKQVLT 332 (1866)
Q Consensus 289 ~k~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~ 332 (1866)
.++-++++|+.. |....+.+...+... +..||++|.+...+.
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 677788999874 333333333332222 246888887765543
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.22 Score=63.25 Aligned_cols=157 Identities=18% Similarity=0.245 Sum_probs=87.5
Q ss_pred CCceeehhhHHHHHHhhhc----CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHH
Q 000202 186 KDLIGVEWRIKEIESLLRT----GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKE 261 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~----~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1866)
.+-.|.+.-.++|.++|.- ..-.-.+++++|++|+|||.|++.+++.....|-... +-.++. ++
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s-LGGvrD--EA--------- 390 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS-LGGVRD--EA--------- 390 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe-cCcccc--HH---------
Confidence 3667888888888888862 2223468999999999999999999998877763221 111111 10
Q ss_pred HHHHHhccccccCccchhHHHHHH--HhhcCcEEEEEecCCCHH------HHHHHhhccCC-----CC--------CCCE
Q 000202 262 LLSKLLNDRNVKNFQNISVNFQSK--RLARKKVLIVFDDVNHPR------QIELLIGRLDR-----FA--------SGSQ 320 (1866)
Q Consensus 262 ll~~~~~~~~~~~~~~~~~~~l~~--~L~~k~~LlVlDdv~~~~------~~~~l~~~~~~-----~~--------~gs~ 320 (1866)
++-+... .-+.......++. ..+.++-|++||.|+... --.+++..+.. |. -=|.
T Consensus 391 ---EIRGHRR-TYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 391 ---EIRGHRR-TYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred ---Hhccccc-cccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 0111110 1111222222222 235577899999997411 11122222110 00 1244
Q ss_pred EE-EEcccc-c-h-hccCccceeeecCCCCHHHHHHHHHhhc
Q 000202 321 VI-ITTRDK-Q-V-LTNCEVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 321 Ii-iTTR~~-~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
|+ |+|-|. + + ..-.+...++++.+-+++|-.+.-+++.
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44 444432 1 1 1122446789999999999988888776
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.15 Score=64.47 Aligned_cols=52 Identities=21% Similarity=0.210 Sum_probs=38.7
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 193 WRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 193 ~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
.-+.++.++|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 78 TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 78 SGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3456677777655455678999999999999999999886655434566764
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.17 Score=55.74 Aligned_cols=122 Identities=17% Similarity=0.191 Sum_probs=61.9
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccc-ccH---HHHHHHHHHHHhcccc----ccCcc--ch
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEET-GRL---DDLRKELLSKLLNDRN----VKNFQ--NI 278 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~---~~l~~~ll~~~~~~~~----~~~~~--~~ 278 (1866)
-.+++|.|..|.|||||++.++-.... ..+.+++....-.... ... .....+++..+.-... ..... ..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~ 103 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGER 103 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHH
Confidence 347999999999999999999875433 4555655321110000 000 1111112222211110 00111 11
Q ss_pred hHHHHHHHhhcCcEEEEEecCC---CHHHHHHHhhccCCC-CC-CCEEEEEccccchh
Q 000202 279 SVNFQSKRLARKKVLIVFDDVN---HPRQIELLIGRLDRF-AS-GSQVIITTRDKQVL 331 (1866)
Q Consensus 279 ~~~~l~~~L~~k~~LlVlDdv~---~~~~~~~l~~~~~~~-~~-gs~IiiTTR~~~v~ 331 (1866)
..-.+.+.+...+-++++|+.- |....+.+...+... .. |..||++|.+...+
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 1134445567788889999874 333333333322221 12 66788888877654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.11 Score=58.92 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=34.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQK 1048 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 1048 (1866)
-+++.|+|.+|+|||+++.++... ....-..++|++... ++...+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 468999999999999999988432 222346788998875 66555444
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.11 Score=60.68 Aligned_cols=103 Identities=12% Similarity=0.093 Sum_probs=61.7
Q ss_pred hHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhcccccc
Q 000202 194 RIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVK 273 (1866)
Q Consensus 194 ~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~ 273 (1866)
.++.+..++.. ...+|.|.|..|.||||++.++.+.+...-...+.+.+..+..... + .++.-. .
T Consensus 68 ~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~----~-----~q~~v~---~ 132 (264)
T cd01129 68 NLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPG----I-----NQVQVN---E 132 (264)
T ss_pred HHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCC----c-----eEEEeC---C
Confidence 34445555543 2347999999999999999998886644222344444433321110 0 000000 0
Q ss_pred CccchhHHHHHHHhhcCcEEEEEecCCCHHHHHHHhhc
Q 000202 274 NFQNISVNFQSKRLARKKVLIVFDDVNHPRQIELLIGR 311 (1866)
Q Consensus 274 ~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~ 311 (1866)
.......+.++..|+..+=.|+++++.+.+....+...
T Consensus 133 ~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 133 KAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred cCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 11112336778888889999999999998876655544
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.62 Score=60.60 Aligned_cols=180 Identities=12% Similarity=0.160 Sum_probs=106.9
Q ss_pred ccCCcccccchhhHHHHHHHHHhccC------C---ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCC
Q 000202 972 LGTSNVTAVNYTQRNVRKIFRYVNDV------T---ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWN 1042 (1866)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~i~~~l~~~------~---~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 1042 (1866)
+...++.|...-++|+.+++++|.++ + .+=+-++|++|.|||-||++++-...+. |++++..
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS-- 378 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS-- 378 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH--
Confidence 34567777777788999999999543 1 2337799999999999999996533332 3344321
Q ss_pred HHHHHHHHHHHhccCCCCccCHHHHHHHHHH-HhCCCcEEEEEeCCCCc-----------------cchhhhcCCCCCCC
Q 000202 1043 TRKIQKQVLRQLSLHCKDRETDAQVAEKLWQ-VLNGEKFLLLLDDVWEQ-----------------IDLEAVGIPVPGSE 1104 (1866)
Q Consensus 1043 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~-----------------~~~~~l~~~l~~~~ 1104 (1866)
++ .+.+.... ...+..+.. .=....+.|.+|+++.. .-++++...+....
T Consensus 379 --EF----vE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 379 --EF----VEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred --HH----HHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 11 11111100 111111222 22346788888887631 11334433333333
Q ss_pred CCc--EEEEccCChhhhcc-----CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1105 NGS--KIFMASRELDVCRN-----MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1105 ~gs--~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
.++ -++-+|+..++... -..+..+.+..-+.....++|..|+.......+..++++ |+...-|.+=|.
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 333 23345666666322 234678888888899999999999876655455666777 888888877443
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.27 Score=63.74 Aligned_cols=130 Identities=21% Similarity=0.218 Sum_probs=77.7
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRL 287 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L 287 (1866)
..+.+.++|++|.|||.||+++++.....|-... .. .++++..++. ............
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~-----~~------------~l~sk~vGes-----ek~ir~~F~~A~ 332 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVK-----GS------------ELLSKWVGES-----EKNIRELFEKAR 332 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEee-----CH------------HHhccccchH-----HHHHHHHHHHHH
Confidence 4567899999999999999999996655543211 11 1111111111 111112233334
Q ss_pred hcCcEEEEEecCCCH-------------HHHHHHhhccCCCCCCCE--EEEEccccchhccC-----ccceeeecCCCCH
Q 000202 288 ARKKVLIVFDDVNHP-------------RQIELLIGRLDRFASGSQ--VIITTRDKQVLTNC-----EVDHIYQMKELVH 347 (1866)
Q Consensus 288 ~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~~~gs~--IiiTTR~~~v~~~~-----~~~~~~~l~~L~~ 347 (1866)
+..++.|.+|.++.. .....++..+......+. ||-||-....+... .-+..+.++.-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 678899999999631 234455555443333333 44455444433311 2356888999999
Q ss_pred HHHHHHHHhhcC
Q 000202 348 ADAHKLFTQCAF 359 (1866)
Q Consensus 348 ~ea~~Lf~~~a~ 359 (1866)
++..+.|..+.-
T Consensus 413 ~~r~~i~~~~~~ 424 (494)
T COG0464 413 EERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHHhc
Confidence 999999998884
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.48 Score=59.31 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=26.6
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhh--ccccceEEEE
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKIS--RHFEGSYFAC 244 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~ 244 (1866)
.++++++|.+|+||||++..++.... ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 45899999999999999999987665 2223344443
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.26 Score=56.99 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=36.0
Q ss_pred HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEe
Q 000202 196 KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACN 245 (1866)
Q Consensus 196 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 245 (1866)
..|-++|..+-+.-.++.|+|.+|+|||+||.++......+=..++|+..
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 44555665554556789999999999999999997654334456667663
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.19 Score=55.79 Aligned_cols=33 Identities=24% Similarity=0.098 Sum_probs=26.4
Q ss_pred EEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 212 LGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 212 i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
+.|.|.+|+|||+||.+++......=..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999999886554445666765
|
A related protein is found in archaea. |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.8 Score=57.06 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=23.4
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..++.++|.+|+||||+|..++....
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999998754
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.18 Score=63.44 Aligned_cols=52 Identities=31% Similarity=0.403 Sum_probs=42.9
Q ss_pred CCceeehhhHHHHHHhhh----cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 186 KDLIGVEWRIKEIESLLR----TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~----~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
++-.|+++-.+.+.+++. .++..-.++..+|++|||||.+|+.++...-..|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 366899888888888886 3445577999999999999999999999776665
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.85 Score=53.27 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=48.9
Q ss_pred EEEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHHHHHHHHHHhhhhh-hhccCeEEEEEEccC
Q 000202 710 RILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSEIRRAENM-ADLSERLLVVLDDVC 788 (1866)
Q Consensus 710 ~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i~~~~~~~~~~~~~-~~~~~r~LlVlddv~ 788 (1866)
..+-|+|+.|+|||+||..+.+... ..... ..++ +..+++..+-.+.......... ....+.-++|+||+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~-~~G~~-v~~~------~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg 174 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV-RAGIK-VRFT------TAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIG 174 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH-HcCCe-EEEE------eHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccc
Confidence 3455999999999999999864322 11222 1222 2333333332211110000001 112233489999998
Q ss_pred CCChHHHH--HHHHhcccCCCCCcEEEEecCC
Q 000202 789 DIDDEELH--NFRLLISNMRDSGSCFLVTTHS 818 (1866)
Q Consensus 789 ~~~~~~w~--~~~~~l~~~~~~gs~iivttr~ 818 (1866)
......|. .+...+...-.+|+ +|+||..
T Consensus 175 ~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 175 YLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred cCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 64333333 34444432223455 6777654
|
|
| >KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.8 Score=51.53 Aligned_cols=181 Identities=13% Similarity=0.192 Sum_probs=105.1
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc------cccceEEEEeecc-cc--------
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR------HFEGSYFACNVRA-AE-------- 250 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~~~~~-~~-------- 250 (1866)
..+.++++.-.++.++... .+..-..++|+.|.||-|.+..+.+++.+ +-+...|...+.. ..
T Consensus 13 ~~l~~~~e~~~~Lksl~~~--~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSST--GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhccc--CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 3466777777777776652 24556789999999999999998886543 1233444433222 00
Q ss_pred -------c-cccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcE-EEEEecCCC--HHHHHHHhhccCCCCCCC
Q 000202 251 -------E-TGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKV-LIVFDDVNH--PRQIELLIGRLDRFASGS 319 (1866)
Q Consensus 251 -------~-~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVlDdv~~--~~~~~~l~~~~~~~~~gs 319 (1866)
. ....+-+.++++.++...... .. -..+.| ++|+-.+++ .+.-.++........+.+
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qi-----------e~-~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQI-----------ET-QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcch-----------hh-ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 0 001133344444443322220 00 011233 566666663 334455666666667788
Q ss_pred EEEEEccccc-hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 320 QVIITTRDKQ-VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 320 ~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
|+|+...+-. +.... ...-.+.+...+++|-...+++.+-+..-.. ..+++.+|+++++|+
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l--p~~~l~rIa~kS~~n 221 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL--PKELLKRIAEKSNRN 221 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC--cHHHHHHHHHHhccc
Confidence 9888543221 11111 1235678999999999999988774443222 268899999999886
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.89 Score=56.69 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=28.1
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
...+|.++|.+|+||||+|..++..+..+....+.+.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV 135 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLV 135 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEE
Confidence 3678999999999999999999887665533334443
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.21 Score=57.33 Aligned_cols=47 Identities=13% Similarity=0.057 Sum_probs=31.4
Q ss_pred HHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 198 IESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 198 l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
+.+.+..+-+.-.++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 13 ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 13 LHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred eehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 33444333334558999999999999999887775533334566665
|
|
| >PRK09361 radB DNA repair and recombination protein RadB; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.13 Score=58.99 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=32.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKI 1046 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 1046 (1866)
-.++.|+|.+|+|||++|.++.... ...-..++|++.. .++...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHHH
Confidence 4588999999999999999985322 1223577899877 5555444
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.83 E-value=2.6 Score=47.96 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=40.4
Q ss_pred EccCChhhhccCC--CCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHH
Q 000202 1111 MASRELDVCRNMD--VNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLL 1172 (1866)
Q Consensus 1111 vTTR~~~v~~~~~--~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLA 1172 (1866)
-|||--.+..... ...+.+++.-+.+|-.+...+.+.--.. .--++-+.+|+++..|-|--
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-~i~~~~a~eIA~rSRGTPRI 219 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-EIDEEAALEIARRSRGTPRI 219 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-CCChHHHHHHHHhccCCcHH
Confidence 4888655433221 2357788999999998888877642211 11234578899999999953
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.17 Score=57.48 Aligned_cols=145 Identities=19% Similarity=0.169 Sum_probs=79.0
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccc-cccHHHHHHHHHHHHhcccc-----ccCcc--chhH
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEE-TGRLDDLRKELLSKLLNDRN-----VKNFQ--NISV 280 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~l~~~ll~~~~~~~~-----~~~~~--~~~~ 280 (1866)
-.++||+|..|+||||||+.+..-.... .+.+++..-.-... .....+...+++...+.... ..+.. ....
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 3479999999999999999999855443 34444432110000 11123334445554432221 11111 1222
Q ss_pred HHHHHHhhcCcEEEEEecCCC------HHHHHHHhhccCCCCCCCEEEEEccccchhccCcc--ceeeecCCCCHHHHHH
Q 000202 281 NFQSKRLARKKVLIVFDDVNH------PRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEV--DHIYQMKELVHADAHK 352 (1866)
Q Consensus 281 ~~l~~~L~~k~~LlVlDdv~~------~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~--~~~~~l~~L~~~ea~~ 352 (1866)
-.+.+.|.-++=|+|.|..-+ ..++-.++..+.. ..|-..+..|-|-.++..+.. .-.|.-+-.+...+-+
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~ 196 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEE 196 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHH
Confidence 566777889999999998643 2344444433322 346678888888777765522 1122223334445556
Q ss_pred HHH
Q 000202 353 LFT 355 (1866)
Q Consensus 353 Lf~ 355 (1866)
+|.
T Consensus 197 ~~~ 199 (268)
T COG4608 197 VFS 199 (268)
T ss_pred Hhh
Confidence 665
|
|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.23 Score=62.91 Aligned_cols=130 Identities=12% Similarity=0.167 Sum_probs=69.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+-|.++|++|+|||.+|+++.+.... .| +-+..+. +.. .. -..+...+.+.+...-...
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~--~~---~~l~~~~------l~~--------~~-vGese~~l~~~f~~A~~~~ 318 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQL--PL---LRLDVGK------LFG--------GI-VGESESRMRQMIRIAEALS 318 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC--CE---EEEEhHH------hcc--------cc-cChHHHHHHHHHHHHHhcC
Confidence 345889999999999999999553221 11 1122111 100 00 0011122222222222357
Q ss_pred cEEEEEeCCCCc----cc----------hhhhcCCCCCCCCCcEEEEccCChhh-----hccCCCCcEEEecCCChHHHH
Q 000202 1079 KFLLLLDDVWEQ----ID----------LEAVGIPVPGSENGSKIFMASRELDV-----CRNMDVNMVVKLETLSMKDAW 1139 (1866)
Q Consensus 1079 r~LlVlDdv~~~----~~----------~~~l~~~l~~~~~gs~IivTTR~~~v-----~~~~~~~~~~~l~~L~~~~a~ 1139 (1866)
+++|++|+++.. .. ...+...+.....+--||.||...+. .+....+..+.+..-+.++-.
T Consensus 319 P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~ 398 (489)
T CHL00195 319 PCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEERE 398 (489)
T ss_pred CcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHH
Confidence 899999999741 00 00111111112233345567765542 222244678899999999999
Q ss_pred HHHHHHhcC
Q 000202 1140 ELFCKEVGG 1148 (1866)
Q Consensus 1140 ~Lf~~~~~~ 1148 (1866)
++|..+...
T Consensus 399 ~Il~~~l~~ 407 (489)
T CHL00195 399 KIFKIHLQK 407 (489)
T ss_pred HHHHHHHhh
Confidence 999877654
|
|
| >KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.21 Score=56.86 Aligned_cols=30 Identities=33% Similarity=0.400 Sum_probs=26.4
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
.+..++|||.+|.|||-+|++|+..+.-+|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 466799999999999999999999886665
|
|
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.27 Score=56.48 Aligned_cols=50 Identities=20% Similarity=0.126 Sum_probs=36.3
Q ss_pred HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc------cceEEEEe
Q 000202 196 KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF------EGSYFACN 245 (1866)
Q Consensus 196 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~ 245 (1866)
..|..+|..+-..-.++.|+|.+|+|||+||.+++....... ..++|+..
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~ 61 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT 61 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEec
Confidence 345555654444567899999999999999999987654444 45677764
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.21 Score=63.06 Aligned_cols=51 Identities=24% Similarity=0.223 Sum_probs=37.7
Q ss_pred hHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 194 RIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 194 ~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
-+.++.+.|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 65 Gi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 65 GIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred CcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 345666677654444668999999999999999999987654434566765
|
|
| >cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.18 Score=54.56 Aligned_cols=31 Identities=13% Similarity=0.048 Sum_probs=24.2
Q ss_pred EEEEecCCCchhHHHHHHHHhhhccccceEEEEe
Q 000202 212 LGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACN 245 (1866)
Q Consensus 212 i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 245 (1866)
+.|.|.+|+|||++|.+++.. .....+|+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at 32 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIAT 32 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEc
Confidence 679999999999999999865 2245666653
|
CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape. |
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.38 Score=53.66 Aligned_cols=115 Identities=23% Similarity=0.271 Sum_probs=59.0
Q ss_pred HHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccC
Q 000202 195 IKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKN 274 (1866)
Q Consensus 195 l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~ 274 (1866)
.+.+...+.. +-+++.|.|.+|.||||+++.+...+...-..++++. .+. .....+........
T Consensus 7 ~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a------pT~---~Aa~~L~~~~~~~a---- 70 (196)
T PF13604_consen 7 REAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA------PTN---KAAKELREKTGIEA---- 70 (196)
T ss_dssp HHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE------SSH---HHHHHHHHHHTS-E----
T ss_pred HHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC------CcH---HHHHHHHHhhCcch----
Confidence 3445555543 3457889999999999999998886655422233332 111 12222222221100
Q ss_pred ccchhHHHHHHHh---------hcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 275 FQNISVNFQSKRL---------ARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 275 ~~~~~~~~l~~~L---------~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
.... ..+...- ..++-+||+|++. +..++..+...... .|+++|+.--..+
T Consensus 71 -~Ti~-~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 71 -QTIH-SFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp -EEHH-HHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred -hhHH-HHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 0000 0000000 2234599999997 56677777766543 5788888765443
|
|
| >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.22 Score=55.07 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
+|.|.|++|+||||+|+.++.+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998865
|
This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=93.64 E-value=1 Score=55.80 Aligned_cols=29 Identities=24% Similarity=0.222 Sum_probs=24.8
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
...+|.++|.+|+||||+|..++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36799999999999999999998866544
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.24 Score=54.01 Aligned_cols=128 Identities=20% Similarity=0.304 Sum_probs=62.7
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccc---------cCccchh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNV---------KNFQNIS 279 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~---------~~~~~~~ 279 (1866)
-.+++|.|..|.|||||.+.++..... ..+.+++....- ... ........+ .-+...... .......
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~~-~~~-~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVDL-RDL-DLESLRKNI-AYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEEh-hhc-CHHHHHhhE-EEEcCCchhccchHHHHhhCHHHHH
Confidence 347999999999999999999875432 345555432110 000 000000000 000000000 0001111
Q ss_pred HHHHHHHhhcCcEEEEEecCC---CHHHHHHHhhccCCCCCCCEEEEEccccchhccCccceeeec
Q 000202 280 VNFQSKRLARKKVLIVFDDVN---HPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQM 342 (1866)
Q Consensus 280 ~~~l~~~L~~k~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l 342 (1866)
.-.+.+.+..++-++++|+.. |....+.+...+.....+..||+||.+...... .+.++.+
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 123445566778899999875 333333332222222235678888888766643 3444443
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.047 Score=55.71 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 000202 1001 KIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1001 vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
+|.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999954
|
... |
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.053 Score=55.94 Aligned_cols=22 Identities=50% Similarity=0.756 Sum_probs=20.6
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 000202 212 LGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 212 i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
|+|.|.+|+||||+|+++..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999875
|
... |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.15 Score=62.37 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=62.8
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEE-eeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC-NVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
..|.|.|..|.||||+..++.+.+.......++.. +..+... ... ..+................++..|+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~--------~~~-~~~i~q~evg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH--------RNK-RSLINQREVGLDTLSFANALRAALR 193 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc--------cCc-cceEEccccCCCCcCHHHHHHHhhc
Confidence 57999999999999999999887765555554432 1111100 000 0000011100001112366778889
Q ss_pred cCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 289 RKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 289 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
..+=.|++|.+.+.+.+....... ..|..|+.|.-...
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNS 231 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCC
Confidence 999999999999988776644432 33555555554443
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.084 Score=55.60 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=28.8
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
.+|-|.|.+|.||||||+++.+++...-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 57899999999999999999998877765555553
|
Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B .... |
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.23 Score=54.88 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.6
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.|.|.|.+|+||||+|+++..+..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998653
|
|
| >PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.045 Score=54.87 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=21.1
Q ss_pred EEEEecCCCchhHHHHHHHHhhhccccce
Q 000202 212 LGIWGIGGIGKTTIAGAVFNKISRHFEGS 240 (1866)
Q Consensus 212 i~I~G~gGiGKTtLA~~~~~~~~~~f~~~ 240 (1866)
|.|+|.+|+||||+|++++..+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 67999999999999999999888888653
|
AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A. |
| >cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.19 Score=59.73 Aligned_cols=51 Identities=20% Similarity=0.124 Sum_probs=37.5
Q ss_pred HHHHHHhhh-cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEe
Q 000202 195 IKEIESLLR-TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACN 245 (1866)
Q Consensus 195 l~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 245 (1866)
...|..+|. .+=+.-+++-|+|.+|+||||||.+++......-..++|+..
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 40 SLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred CHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 344555665 444556789999999999999999988766555566777763
|
RecA couples ATP hydrolysis to DNA strand exchange. |
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.25 Score=56.81 Aligned_cols=90 Identities=16% Similarity=0.181 Sum_probs=51.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCccccc----ccceEEEEEecCCCCHHHHHHHHHHHhccCC---------CCccCHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKV----MFHVIIWVTVSRYWNTRKIQKQVLRQLSLHC---------KDRETDA 1065 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------~~~~~~~ 1065 (1866)
-.++.|+|.+|+|||+||.++........ .=..++|++....++...+. .+++...... ....+.+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNGE 97 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCHH
Confidence 45899999999999999998843221111 01457889887777765543 3333322110 1112344
Q ss_pred HHHHHHHHHhC----CCcEEEEEeCCCC
Q 000202 1066 QVAEKLWQVLN----GEKFLLLLDDVWE 1089 (1866)
Q Consensus 1066 ~~~~~l~~~L~----~kr~LlVlDdv~~ 1089 (1866)
+....+.+... .+--|||+|.+..
T Consensus 98 ~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 98 QQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred HHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 44444444432 3445888888753
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.14 Score=55.46 Aligned_cols=116 Identities=17% Similarity=0.185 Sum_probs=59.5
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLAR 289 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~ 289 (1866)
.+++|.|..|.|||||.+.++-.... ..+.+++....- .. ...... ....+.-... ........-.+.+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~~-~~-~~~~~~---~~~~i~~~~q-LS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGKEV-SF-ASPRDA---RRAGIAMVYQ-LSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEC-Cc-CCHHHH---HhcCeEEEEe-cCHHHHHHHHHHHHHhc
Confidence 47999999999999999999875432 345555532211 00 000010 0001110000 01111122344555667
Q ss_pred CcEEEEEecCC---CHHHHHHHhhccCCC-CCCCEEEEEccccchhc
Q 000202 290 KKVLIVFDDVN---HPRQIELLIGRLDRF-ASGSQVIITTRDKQVLT 332 (1866)
Q Consensus 290 k~~LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~IiiTTR~~~v~~ 332 (1866)
++-++++|+.- |....+.+...+... ..|..||++|.+...+.
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 77888999875 333333333222211 23667888888876443
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.058 Score=59.95 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=36.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC-CCHHHHHHHHHHHhccC
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY-WNTRKIQKQVLRQLSLH 1057 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~ 1057 (1866)
++|.++|+.|+||||.+-.++.+...+ =..+..++.... ....+-++..++.++..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 589999999999998887775433333 234455654322 34556677778877754
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=93.39 E-value=1.3 Score=52.94 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=56.5
Q ss_pred CCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCC-hhhhccCC-CCcEEEecCCChHHHHHHHHHHhcCCCCC
Q 000202 1077 GEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRE-LDVCRNMD-VNMVVKLETLSMKDAWELFCKEVGGIIQS 1152 (1866)
Q Consensus 1077 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 1152 (1866)
+++=++|+|+++.- ..-+.+...+..-..++.+|++|.+ ..+..... -...+.+.+++.+++.+.+.+. + . .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~-~--~ 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-G-V--S 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-C-C--C
Confidence 45668889998752 3333444333333346666666664 34433222 1367889999999998887653 1 1 1
Q ss_pred chHHHHHHHHHHHcCCChHHHHHH
Q 000202 1153 PDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1153 ~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
...+..++..++|-|+.+..+
T Consensus 188 ---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 188 ---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred ---hHHHHHHHHHcCCCHHHHHHH
Confidence 122567899999999865443
|
|
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.29 Score=66.01 Aligned_cols=47 Identities=23% Similarity=0.236 Sum_probs=38.7
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHh
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
..++|+...+..+.+.+..-......|.|+|..|+|||++|+.+.+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 47999999999987777643334457899999999999999999874
|
|
| >PRK09280 F0F1 ATP synthase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.17 Score=62.88 Aligned_cols=90 Identities=21% Similarity=0.316 Sum_probs=51.6
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhcccccc---Cccc--hh-----
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVK---NFQN--IS----- 279 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~---~~~~--~~----- 279 (1866)
+.++|.|.+|+|||||+..++.....+.+.++-+...++ ......++.+++...-....... ..+. ..
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGE--R~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE--RTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc--CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 468999999999999999998866655444444444444 23333455555544311111100 0000 00
Q ss_pred --HHHHHHHh---hcCcEEEEEecCCC
Q 000202 280 --VNFQSKRL---ARKKVLIVFDDVNH 301 (1866)
Q Consensus 280 --~~~l~~~L---~~k~~LlVlDdv~~ 301 (1866)
.-.+.+++ +++++||++||+-.
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHH
Confidence 02244454 67999999999964
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.13 Score=55.82 Aligned_cols=52 Identities=25% Similarity=0.306 Sum_probs=40.6
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
|....+.||-++-++.+.-.-..+ +..-+.|.||+|+||||=+..++++.-+
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~g--nmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEG--NMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcC--CCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 344567999999998887665543 4566889999999999999999986543
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.23 Score=57.12 Aligned_cols=102 Identities=18% Similarity=0.160 Sum_probs=56.4
Q ss_pred eEEEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHHHHHHHHHH-hhhhhhhccCeEEEEEEcc
Q 000202 709 VRILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSEIR-RAENMADLSERLLVVLDDV 787 (1866)
Q Consensus 709 l~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i~~~~~~~~-~~~~~~~~~~r~LlVlddv 787 (1866)
..-+-++|..|.|||.||..+.+.-. +.....++++++ +++..|-..+.... .......+.+-=||||||+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~~------~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDl 172 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTVP------DVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEI 172 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEHH------HHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCC
Confidence 35678999999999999999987543 333334666554 44444433332111 1112223355569999999
Q ss_pred CCCC--hHHHHHHHHhcccCCCCCcEEEEecCC
Q 000202 788 CDID--DEELHNFRLLISNMRDSGSCFLVTTHS 818 (1866)
Q Consensus 788 ~~~~--~~~w~~~~~~l~~~~~~gs~iivttr~ 818 (1866)
-.+. .+..+.+...+...-.+.--+||||..
T Consensus 173 g~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 173 GIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5432 233344554443312223335667653
|
|
| >COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.39 Score=61.22 Aligned_cols=175 Identities=17% Similarity=0.192 Sum_probs=91.9
Q ss_pred CCCceeehhhHHHHHHhh---hcCC-------CCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 185 SKDLIGVEWRIKEIESLL---RTGS-------AGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L---~~~~-------~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
..+..|.|+..+++.+.+ .... .-++-|.++|++|.|||.||++++-+..--| +..++.
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF-----f~iSGS------ 217 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FSISGS------ 217 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc-----eeccch------
Confidence 456788887776665544 4221 2255689999999999999999998643333 111111
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC----------------HHHHHHHhhccCCCCCC
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH----------------PRQIELLIGRLDRFASG 318 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~----------------~~~~~~l~~~~~~~~~g 318 (1866)
.......+.. .....+...+..++-++.|++|.++. ...+..++.....|+.+
T Consensus 218 ------~FVemfVGvG-----AsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 218 ------DFVEMFVGVG-----ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred ------hhhhhhcCCC-----cHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 0000111110 11112333444566689999998863 12466677666666643
Q ss_pred CEEEE--EccccchhccC-----ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 319 SQVII--TTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 319 s~Iii--TTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
.-||| -|-.++|+... .-+..+.++..+...-.+.++-|+-+.. .....++ ..|++.+-|.-.
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~--l~~~Vdl-~~iAr~tpGfsG 356 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKP--LAEDVDL-KKIARGTPGFSG 356 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCC--CCCcCCH-HHHhhhCCCccc
Confidence 33333 33333443221 2244556666666666666665553221 1111111 226666666543
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.46 Score=55.60 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred eehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHH---hhhccccceEEEEeeccccccccH------HHHHH
Q 000202 190 GVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFN---KISRHFEGSYFACNVRAAEETGRL------DDLRK 260 (1866)
Q Consensus 190 Gr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~---~~~~~f~~~~~~~~~~~~~~~~~~------~~l~~ 260 (1866)
+|..+-.--..+|..+ ++..|.+.|.+|.|||-||.+..- ..+..|...+-....-.....-.+ .++.-
T Consensus 228 prn~eQ~~ALdlLld~--dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~P 305 (436)
T COG1875 228 PRNAEQRVALDLLLDD--DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGP 305 (436)
T ss_pred cccHHHHHHHHHhcCC--CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccc
Q ss_pred HHHHHHhccccccCccchhHHHHHHHhhcC----------------cEEEEEecCCC--HHHHHHHhhccCCCCCCCEEE
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKRLARK----------------KVLIVFDDVNH--PRQIELLIGRLDRFASGSQVI 322 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k----------------~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Ii 322 (1866)
-+-.-.-.-.............+...+..+ +-+||+|.+.+ +.++..++.. .|+||||+
T Consensus 306 Wmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR---~G~GsKIV 382 (436)
T COG1875 306 WMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTR---AGEGSKIV 382 (436)
T ss_pred hHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHh---ccCCCEEE
Q ss_pred EE
Q 000202 323 IT 324 (1866)
Q Consensus 323 iT 324 (1866)
.|
T Consensus 383 l~ 384 (436)
T COG1875 383 LT 384 (436)
T ss_pred Ec
|
|
| >TIGR02012 tigrfam_recA protein RecA | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.21 Score=59.40 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=36.4
Q ss_pred HHHHHhhh-cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 196 KEIESLLR-TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 196 ~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
..|-.+|. .+=+.-+++-|+|.+|+||||||.+++......-..++|+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 44555665 44455678999999999999999998886655545566775
|
This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. |
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.13 Score=59.57 Aligned_cols=100 Identities=21% Similarity=0.227 Sum_probs=49.8
Q ss_pred EEEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHHHHHHHHHHhhhhhhhccCeEEEEEEccCC
Q 000202 710 RILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSEIRRAENMADLSERLLVVLDDVCD 789 (1866)
Q Consensus 710 ~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~r~LlVlddv~~ 789 (1866)
.-+-++|++|.|||+||+.+-.... +..+. ..++ ...+++..+...............+.+.-+||+||+-.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~~-v~f~------t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~ 170 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGHR-VLFA------TAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGY 170 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCCc-hhhh------hHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEccccc
Confidence 3467999999999999998764322 12222 1222 33344444322211100011111223445899999965
Q ss_pred CCh--HHHHHHHHhcccCCCCCcEEEEecCC
Q 000202 790 IDD--EELHNFRLLISNMRDSGSCFLVTTHS 818 (1866)
Q Consensus 790 ~~~--~~w~~~~~~l~~~~~~gs~iivttr~ 818 (1866)
... ..-..+...+...-.+++ +|+||..
T Consensus 171 ~~~~~~~~~~L~~li~~r~~~~s-~IitSn~ 200 (254)
T PRK06526 171 IPFEPEAANLFFQLVSSRYERAS-LIVTSNK 200 (254)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCC-EEEEcCC
Confidence 322 222234444432223455 7777764
|
|
| >cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.16 Score=58.70 Aligned_cols=89 Identities=19% Similarity=0.338 Sum_probs=53.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCccccccc-ceEEEEEecCC-CCHHHHHHHHHHHhccC-------CCCccCHH----
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMF-HVIIWVTVSRY-WNTRKIQKQVLRQLSLH-------CKDRETDA---- 1065 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 1065 (1866)
-+.++|.|-.|+|||||++.+++.. +.+| +.++++-+.+. ..+.++.+.+...=... ..+.....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i--~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNI--AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHH--HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3468999999999999999996543 3344 34556666544 45566666665431111 11111111
Q ss_pred -HHHHHHHHHh---CCCcEEEEEeCCCC
Q 000202 1066 -QVAEKLWQVL---NGEKFLLLLDDVWE 1089 (1866)
Q Consensus 1066 -~~~~~l~~~L---~~kr~LlVlDdv~~ 1089 (1866)
...-.+.+++ +++.+|||+||+..
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1223344555 38999999999854
|
The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.16 Score=55.52 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.9
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
++.+.|++|+||||++..++......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999876654
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK05541 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.12 Score=56.87 Aligned_cols=35 Identities=31% Similarity=0.508 Sum_probs=25.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEE
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWV 1035 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv 1035 (1866)
..+|.+.|+.|+||||+|+.+++ .....+...+++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 45799999999999999999954 333344445554
|
|
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.41 Score=50.74 Aligned_cols=118 Identities=15% Similarity=0.118 Sum_probs=59.0
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhc---ccc-c--cCccchh----
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLN---DRN-V--KNFQNIS---- 279 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~---~~~-~--~~~~~~~---- 279 (1866)
..|-|++-.|.||||+|...+-+...+=-.+.++.-...... ..-...++.+ ..+.- ... . .......
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~-~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWK-YGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCc-cCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 367888999999999999999876655334444332222101 1112222222 00000 000 0 0000000
Q ss_pred ---HHHHHHHhhcC-cEEEEEecCCCH-----HHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 280 ---VNFQSKRLARK-KVLIVFDDVNHP-----RQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 280 ---~~~l~~~L~~k-~~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
-+..++.++.. -=|||||++-.. -..+.+...+..-.++..||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 03334444444 459999998532 122223333333345789999999864
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.24 Score=53.71 Aligned_cols=126 Identities=17% Similarity=0.140 Sum_probs=61.8
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecc---ccccccH--HHHHHHHHHHHhccccccCccchhHHHH
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRA---AEETGRL--DDLRKELLSKLLNDRNVKNFQNISVNFQ 283 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~---~~~~~~~--~~l~~~ll~~~~~~~~~~~~~~~~~~~l 283 (1866)
-.+++|.|..|.|||||++.++-..... .+.+++...+. ......+ ..+.+.+... ............-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 3479999999999999999998754322 33333321000 0000001 1222222110 011011111122344
Q ss_pred HHHhhcCcEEEEEecCC---CHHHHHHHhhccCCCCCCCEEEEEccccchhccCccceeeec
Q 000202 284 SKRLARKKVLIVFDDVN---HPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQM 342 (1866)
Q Consensus 284 ~~~L~~k~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l 342 (1866)
.+.+..++=++++|+.- |....+.+...+... +..||++|.+...... .++++.+
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~--~d~i~~l 160 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKF--HDRVLDL 160 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhh--CCEEEEE
Confidence 55566777888999874 333333333322222 3568888888765432 3445444
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR02974 phageshock_pspF psp operon transcriptional activator PspF | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.24 Score=60.09 Aligned_cols=45 Identities=24% Similarity=0.152 Sum_probs=35.5
Q ss_pred ceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHh
Q 000202 188 LIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 188 ~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
+||....++++.+.+..-...-..|.|+|..|+||+++|+.+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 477888888877777654444456899999999999999998863
|
Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH |
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.18 Score=58.27 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=34.5
Q ss_pred HHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc------ccceEEEEe
Q 000202 197 EIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH------FEGSYFACN 245 (1866)
Q Consensus 197 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~~ 245 (1866)
.|..+|..+-..-.++.|+|.+|+|||+||.+++...... -..++|+..
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeC
Confidence 3445555444456789999999999999999998643222 256777764
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.033 Score=37.40 Aligned_cols=20 Identities=35% Similarity=0.637 Sum_probs=11.0
Q ss_pred CcEEEccCCCCCCCChhhcC
Q 000202 1424 LKVLNLSKTRIKSLPETLVN 1443 (1866)
Q Consensus 1424 L~~L~Ls~~~i~~lp~~i~~ 1443 (1866)
|++|||++|.++.+|+++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 55556665555555554443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2 | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.076 Score=59.32 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=22.8
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhc
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
+|||.|.+|+||||+|+++...+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6999999999999999999997764
|
7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: |
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.33 Score=56.17 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=35.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccc----cceEEEEEecCCCCHHHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVM----FHVIIWVTVSRYWNTRKIQ 1047 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~ 1047 (1866)
-.++.|+|.+|+|||+||.+++........ -..++|++....++...+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 457899999999999999998532222221 3578899988777765443
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >cd01394 radB RadB | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.23 Score=56.72 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=29.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWN 1042 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 1042 (1866)
-+++.|.|.+|+||||+|.++.... ...=..++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCH
Confidence 4678999999999999999985322 12223567887655544
|
The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear. |
| >PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.15 Score=55.35 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
+|.|.|.+|+||||+|..++.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 58999999999999999998764
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.53 Score=51.77 Aligned_cols=123 Identities=20% Similarity=0.255 Sum_probs=61.9
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHh--cccc-----------ccCc-
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLL--NDRN-----------VKNF- 275 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~--~~~~-----------~~~~- 275 (1866)
.+++|.|..|.|||||++.++-.... ..+.+++... . .......+...+. .... ....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~------~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS 100 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGV-P------VSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFS 100 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCE-E------HHHHHHHHHhhEEEEccCCeeecccHHHhhcccCC
Confidence 47999999999999999999875432 2344444321 1 0000001111110 0000 0001
Q ss_pred -cchhHHHHHHHhhcCcEEEEEecCCC---HHHHHHHhhccCCCCCCCEEEEEccccchhccCccceeeec
Q 000202 276 -QNISVNFQSKRLARKKVLIVFDDVNH---PRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQM 342 (1866)
Q Consensus 276 -~~~~~~~l~~~L~~k~~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l 342 (1866)
.....-.+.+.+..++=++++|+... ....+.+...+.....+..||++|.+...... .+.++.+
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11111334455667778889998753 33333332222222236778889988776643 3444443
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK09354 recA recombinase A; Provisional | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.28 Score=58.90 Aligned_cols=51 Identities=20% Similarity=0.137 Sum_probs=38.1
Q ss_pred HHHHHHhhh-cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEe
Q 000202 195 IKEIESLLR-TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACN 245 (1866)
Q Consensus 195 l~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 245 (1866)
+..|..+|. .+=+.-+++-|+|.+|+||||||.+++......-..++|+..
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~ 96 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 96 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC
Confidence 344556666 444556789999999999999999998866555566777763
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.51 Score=54.65 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
+..|+|.||+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999988654
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK12597 F0F1 ATP synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.21 Score=62.35 Aligned_cols=90 Identities=23% Similarity=0.318 Sum_probs=50.1
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccc-cceEEEEeeccccccccHHHHHHHHHHHHhccccccCc---cc--hhH--
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHF-EGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNF---QN--ISV-- 280 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~---~~--~~~-- 280 (1866)
-+.++|.|.+|+|||||+..+++....+. +.++|. ..++ ......++...+...-.......-. +. ...
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~-liGE--R~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA-GVGE--RSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE-cCCc--chHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 34689999999999999999998766443 444444 3433 2222344444444321111110000 00 000
Q ss_pred -----HHHHHHh--h-cCcEEEEEecCCC
Q 000202 281 -----NFQSKRL--A-RKKVLIVFDDVNH 301 (1866)
Q Consensus 281 -----~~l~~~L--~-~k~~LlVlDdv~~ 301 (1866)
-.+.+++ + ++++|+++||+-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 2334444 3 7899999999953
|
|
| >TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.16 Score=59.32 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=21.9
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhc
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
.|.+.|++|+||||+|++++.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999987654
|
Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity. |
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.29 Score=57.98 Aligned_cols=85 Identities=22% Similarity=0.244 Sum_probs=44.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccc-cccceEEEEEecCC-CCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVK-VMFHVIIWVTVSRY-WNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLN 1076 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 1076 (1866)
..+|+++|.+|+||||++..+..+...+ +.+ .+..|+.... ....+.+..-.+.++.......+..++...+. .+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~-~~~ 271 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALD-RLR 271 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHH-Hcc
Confidence 4589999999999999999886543332 222 3444554321 11222333334444433322334444444443 333
Q ss_pred CCcEEEEEeC
Q 000202 1077 GEKFLLLLDD 1086 (1866)
Q Consensus 1077 ~kr~LlVlDd 1086 (1866)
+ .=+|++|.
T Consensus 272 ~-~d~vliDt 280 (282)
T TIGR03499 272 D-KDLILIDT 280 (282)
T ss_pred C-CCEEEEeC
Confidence 3 34677775
|
|
| >PRK15455 PrkA family serine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.18 Score=63.26 Aligned_cols=49 Identities=27% Similarity=0.295 Sum_probs=40.9
Q ss_pred CceeehhhHHHHHHhhh----cCCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 187 DLIGVEWRIKEIESLLR----TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~----~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
+++|.+..++.+.+.|. .-....+++.++|++|+||||||+.+++-+..
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 68999999999999883 23345679999999999999999999985443
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.23 Score=54.12 Aligned_cols=116 Identities=17% Similarity=0.173 Sum_probs=0.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcC
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARK 290 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k 290 (1866)
+++|.|..|.|||||.+.++...... .+.+++....-.-..+... ........-.+.+.+..+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~q~~~----------------LSgGq~qrv~laral~~~ 89 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWDGITPVYKPQYID----------------LSGGELQRVAIAAALLRN 89 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCC-CcEEEECCEEEEEEcccCC----------------CCHHHHHHHHHHHHHhcC
Q ss_pred cEEEEEecCC---CHHHHHHHhhccCCCCC--CCEEEEEccccchhccCccceeeecCC
Q 000202 291 KVLIVFDDVN---HPRQIELLIGRLDRFAS--GSQVIITTRDKQVLTNCEVDHIYQMKE 344 (1866)
Q Consensus 291 ~~LlVlDdv~---~~~~~~~l~~~~~~~~~--gs~IiiTTR~~~v~~~~~~~~~~~l~~ 344 (1866)
+-++++|+.- |....+.+...+..... +..||++|.+...+... .+.++.+..
T Consensus 90 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~-~d~i~~l~~ 147 (177)
T cd03222 90 ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL-SDRIHVFEG 147 (177)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh-CCEEEEEcC
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.79 Score=55.83 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=24.7
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
..+++++|..|+||||++..++.+....+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~ 165 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF 165 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 46899999999999999999998765443
|
|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.44 Score=54.28 Aligned_cols=37 Identities=14% Similarity=-0.055 Sum_probs=28.6
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
.-.++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3458999999999999999999886655444566664
|
|
| >TIGR01039 atpD ATP synthase, F1 beta subunit | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.23 Score=61.48 Aligned_cols=91 Identities=22% Similarity=0.289 Sum_probs=52.0
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccc-----cCccchhH---
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNV-----KNFQNISV--- 280 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~-----~~~~~~~~--- 280 (1866)
-+.++|.|.+|+|||||+..++.....+...++.+...++ ......++.+++...-...... .+......
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGE--R~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE--RTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecC--CchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3468999999999999999999876555444444444544 2233345555554321111100 00000000
Q ss_pred ----HHHHHHh---hcCcEEEEEecCCC
Q 000202 281 ----NFQSKRL---ARKKVLIVFDDVNH 301 (1866)
Q Consensus 281 ----~~l~~~L---~~k~~LlVlDdv~~ 301 (1866)
-.+.+++ +++++||++||+-.
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 2334455 46899999999964
|
The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit. |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.077 Score=58.86 Aligned_cols=200 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred CCCCcEEEccCCCCC-----CCChhhcCCCCCcEEecccccCcccCCccc-----------cCCCCCcEEEccCCCCC-c
Q 000202 1421 MTSLKVLNLSKTRIK-----SLPETLVNLKCLQILILRDCDFLFVLPPEV-----------GSLECLEVLDLRGTEIK-M 1483 (1866)
Q Consensus 1421 l~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i-----------~~L~~L~~L~l~~~~i~-~ 1483 (1866)
|..+..++||+|.|. .+...|.+-.+|+..+++.-. ++..-+.+ -++++|+..+||.|.+. +
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Q ss_pred CChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCCCCccccccc------cccccccCC
Q 000202 1484 LPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVK------IVITEVSGL 1557 (1866)
Q Consensus 1484 lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~------~~~~~l~~l 1557 (1866)
.|+.++.+ +++-+.|..|.++.|+..+.-...+. +......+.
T Consensus 108 ~~e~L~d~-------------------------------is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~k 156 (388)
T COG5238 108 FPEELGDL-------------------------------ISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADK 156 (388)
T ss_pred cchHHHHH-------------------------------HhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccC
Q ss_pred CCCCEEEeecCCccchHHhhccCccccC-CcceeEEEEecccccccccccccccccccCccceeEeecCCCCChHHHHHH
Q 000202 1558 TKLSSLSFHFPEIECVAEFLKGSAWNNQ-QLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQIL 1636 (1866)
Q Consensus 1558 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l 1636 (1866)
+.|+...+..|.+...+.-......... +|+.+.+..+. +-|..+..+
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNg-------------------------------Irpegv~~L 205 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG-------------------------------IRPEGVTML 205 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecC-------------------------------cCcchhHHH
Q ss_pred HhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCccccccccccccccccc
Q 000202 1637 IHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHL 1700 (1866)
Q Consensus 1637 ~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~ 1700 (1866)
... ++.++.+|+.|+|....--..-..-........+.|+.|.+.+|
T Consensus 206 ~~~-----------------gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 206 AFL-----------------GLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHH-----------------HHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
|
|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=92.72 E-value=1.5 Score=53.34 Aligned_cols=68 Identities=7% Similarity=0.081 Sum_probs=43.1
Q ss_pred CCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCChh-hhccCC-CCcEEEecCCChHHHHHHHHH
Q 000202 1077 GEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRELD-VCRNMD-VNMVVKLETLSMKDAWELFCK 1144 (1866)
Q Consensus 1077 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~-~~~~~~l~~L~~~~a~~Lf~~ 1144 (1866)
+.+=++|+|++..- ...+.+...+..-..++.+|++|.+.. +..... -...+++.+++.++..+.+.+
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 44557888998753 344555555544445677777766533 332221 236889999999999887765
|
|
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.36 Score=63.16 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=40.8
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHh
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
....++|....++++.+.+..-......|.|+|..|+|||++|+.+.+.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 4468999999999998888754444456889999999999999999874
|
This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. |
| >PRK12678 transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.21 Score=62.41 Aligned_cols=91 Identities=19% Similarity=0.210 Sum_probs=50.5
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccc-cceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhH-----HHH
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHF-EGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISV-----NFQ 283 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~-----~~l 283 (1866)
..++|+|.+|+|||||+..+++.+.... +..+++..+++ -.....++.+.+-.++.............. -.+
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgE--RpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDE--RPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeC--chhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999775533 44555655555 222233343332111111110000000000 123
Q ss_pred HHHh--hcCcEEEEEecCCCH
Q 000202 284 SKRL--ARKKVLIVFDDVNHP 302 (1866)
Q Consensus 284 ~~~L--~~k~~LlVlDdv~~~ 302 (1866)
.+++ .++.+||++|++-..
T Consensus 495 Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHcCCCEEEEEeCchHH
Confidence 3444 678999999999643
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=92.61 E-value=1.7 Score=51.05 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=32.4
Q ss_pred HHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHH
Q 000202 986 NVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKI 1046 (1866)
Q Consensus 986 ~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 1046 (1866)
-+++++.++... ..|.++|.+|+|||+||+.+.. ... .....+++....+..++
T Consensus 10 l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~--~lg---~~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 10 VTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVAR--KRD---RPVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHH--HhC---CCEEEEeCCccCCHHHH
Confidence 344555555433 2467999999999999999954 221 12334555544444443
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.047 Score=36.67 Aligned_cols=20 Identities=35% Similarity=0.690 Sum_probs=10.7
Q ss_pred CcEEEccCCCCCcCChhhcC
Q 000202 1471 LEVLDLRGTEIKMLPKEIGK 1490 (1866)
Q Consensus 1471 L~~L~l~~~~i~~lp~~i~~ 1490 (1866)
|++||+++|.++.+|.++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 55555555555555554443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ] | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.7 Score=56.20 Aligned_cols=195 Identities=11% Similarity=0.136 Sum_probs=116.6
Q ss_pred hhHHHHHHHHHhccCCccEEEEEcCCCchHHHHH-HHHhcCcccccccceEEEEEecC---CCCHHHHHHHHHHHhccCC
Q 000202 983 TQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAAL-KALISYPEVKVMFHVIIWVTVSR---YWNTRKIQKQVLRQLSLHC 1058 (1866)
Q Consensus 983 ~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~~~l~~~~ 1058 (1866)
|.+.++++-.||.+..-..|.|.|+-|.||+.|+ .++..+... +..+++.+ ..+...+++.++.++|.-.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 3466788889998877789999999999999999 666543222 44444432 2344556666666664211
Q ss_pred -----------------------CC-ccC-HHHHH-------HHHHH-------------------HhC---CCcEEEEE
Q 000202 1059 -----------------------KD-RET-DAQVA-------EKLWQ-------------------VLN---GEKFLLLL 1084 (1866)
Q Consensus 1059 -----------------------~~-~~~-~~~~~-------~~l~~-------------------~L~---~kr~LlVl 1084 (1866)
.. ..+ ..++. ..|++ +|+ .+|=+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 00 011 11111 11221 111 23568999
Q ss_pred eCCCCc-----------cchhhhcCCCCCCCCCcEEEEccCChhhhc----cC--CCCcEEEecCCChHHHHHHHHHHhc
Q 000202 1085 DDVWEQ-----------IDLEAVGIPVPGSENGSKIFMASRELDVCR----NM--DVNMVVKLETLSMKDAWELFCKEVG 1147 (1866)
Q Consensus 1085 Ddv~~~-----------~~~~~l~~~l~~~~~gs~IivTTR~~~v~~----~~--~~~~~~~l~~L~~~~a~~Lf~~~~~ 1147 (1866)
|+.-.. .+|.... .. .+=-.||++|-+..... .+ ...+.+.|...+.+.|.+....+..
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~L---v~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASL---VQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHH---Hh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 998642 2343322 11 23346787777654433 22 2346788999999999999988875
Q ss_pred CCCCC-------------------chHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHH
Q 000202 1148 GIIQS-------------------PDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVS 1187 (1866)
Q Consensus 1148 ~~~~~-------------------~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~ 1187 (1866)
..... .....-....+...||==.-+..+++.++...++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 43110 11223345677888998888888998888655544
|
It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA []. |
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.091 Score=57.95 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=21.7
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.|.|.|++|+||||+|+.++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999764
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.21 Score=58.03 Aligned_cols=75 Identities=21% Similarity=0.284 Sum_probs=43.5
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
+..-+.++|.+|+|||.||.++.+.-- +..+ .+.++++ .++..++...... . ....++.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~~------~el~~~Lk~~~~~----~----~~~~~l~~~l~- 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFITA------PDLLSKLKAAFDE----G----RLEEKLLRELK- 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEEH------HHHHHHHHHHHhc----C----chHHHHHHHhh-
Confidence 445688999999999999999965443 3233 3445554 3455554443322 1 11122222222
Q ss_pred CcEEEEEeCCCC
Q 000202 1078 EKFLLLLDDVWE 1089 (1866)
Q Consensus 1078 kr~LlVlDdv~~ 1089 (1866)
+-=||||||+-.
T Consensus 167 ~~dlLIiDDlG~ 178 (254)
T COG1484 167 KVDLLIIDDIGY 178 (254)
T ss_pred cCCEEEEecccC
Confidence 233889999964
|
|
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.41 Score=62.03 Aligned_cols=50 Identities=20% Similarity=0.316 Sum_probs=42.1
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
....++|....++++.+.+..-......|.|+|..|+|||++|+.+.+.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 35679999999999998887655555679999999999999999998843
|
|
| >COG0572 Udk Uridine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.12 Score=56.95 Aligned_cols=30 Identities=33% Similarity=0.432 Sum_probs=26.5
Q ss_pred CCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 207 AGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 207 ~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
..+.+|||.|.+|+||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 356899999999999999999999987755
|
|
| >KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.49 Score=57.61 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=39.6
Q ss_pred CCcccccchhhHHHHHHHHHhccCC---------ccEEEEEcCCCchHHHHHHHHhcCcc
Q 000202 974 TSNVTAVNYTQRNVRKIFRYVNDVT---------ASKIGVYGVGGIGKTAALKALISYPE 1024 (1866)
Q Consensus 974 ~~~~~~~~~~~~~~~~i~~~l~~~~---------~~vi~I~G~gGvGKTtLa~~v~~~~~ 1024 (1866)
.+++-|...-+.|+++|+++|.++. .+=|.++|++|.|||-||++|.-...
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 4566667777789999999997641 23478999999999999999954433
|
|
| >PTZ00301 uridine kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.1 Score=58.55 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=24.8
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
..+|||.|.+|+||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999988775443
|
|
| >PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.37 Score=56.13 Aligned_cols=103 Identities=22% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhh-----ccccceEEEEeeccccccccHHHHHH-------HHH
Q 000202 196 KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS-----RHFEGSYFACNVRAAEETGRLDDLRK-------ELL 263 (1866)
Q Consensus 196 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~-----~~f~~~~~~~~~~~~~~~~~~~~l~~-------~ll 263 (1866)
..|-++|..+-..-.++=|+|.+|+|||+||.+++-... ...++.+++.+....-....+..+.+ +++
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l 104 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEIL 104 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhh
Q ss_pred HHHhccccccCccchhH--HHHHHHhhcCcE-EEEEecC
Q 000202 264 SKLLNDRNVKNFQNISV--NFQSKRLARKKV-LIVFDDV 299 (1866)
Q Consensus 264 ~~~~~~~~~~~~~~~~~--~~l~~~L~~k~~-LlVlDdv 299 (1866)
..+.-... ........ ..+...+.+.++ |||+|.+
T Consensus 105 ~~I~v~~~-~~~~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 105 DNIFVIRV-FDLEELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HTEEEEE--SSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred hceeeeec-CCHHHHHHHHHHHHhhccccceEEEEecch
|
It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D .... |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.89 Score=55.89 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=23.6
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..++|.++|..|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999988654
|
|
| >PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=92.37 E-value=3.8 Score=49.26 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=31.6
Q ss_pred eeecCCCCHHHHHHHHHhhcCCCCCCC-hhHHHHHHHHHHHhCCCcce
Q 000202 339 IYQMKELVHADAHKLFTQCAFRGDHLD-AGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 339 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLA 385 (1866)
+++|++++.+|+..++...+-.+--.. ...+...+++.-..+|+|--
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHH
Confidence 789999999999999987663322111 22344456666666999853
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29). |
| >PRK00625 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.095 Score=56.92 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.5
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.|.|+||+|+||||+|+.++++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998764
|
|
| >KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.34 E-value=2.7 Score=46.58 Aligned_cols=183 Identities=18% Similarity=0.240 Sum_probs=94.3
Q ss_pred CCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccc
Q 000202 185 SKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETG 253 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (1866)
..+.=|-+..++++.+.+-. +-...+-|..+|++|.|||-+|++.+.+....|-. ..+
T Consensus 170 YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLK-----LAg------ 238 (424)
T KOG0652|consen 170 YSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLK-----LAG------ 238 (424)
T ss_pred ccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHH-----hcc------
Confidence 34555666666666654421 11235568899999999999999998876555421 101
Q ss_pred cHHHHHHHHHHHHhccccccCccchhHHHHHHH----hhcCcEEEEEecCCC-------------HH---HHHHHhhccC
Q 000202 254 RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKR----LARKKVLIVFDDVNH-------------PR---QIELLIGRLD 313 (1866)
Q Consensus 254 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~-------------~~---~~~~l~~~~~ 313 (1866)
-++.....+... ..++.. -...+..|.+|.++- .+ ..-.++..+.
T Consensus 239 ------PQLVQMfIGdGA---------kLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLD 303 (424)
T KOG0652|consen 239 ------PQLVQMFIGDGA---------KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 303 (424)
T ss_pred ------hHHHhhhhcchH---------HHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhc
Confidence 122222222111 111111 134578888898752 11 1233455555
Q ss_pred CCCCC--CEEEEEccccchhc-----cCccceeeecCCCCHHHHHHHHHhhcCCC-CCCChhHHHHHHHHHHHhCCCcce
Q 000202 314 RFASG--SQVIITTRDKQVLT-----NCEVDHIYQMKELVHADAHKLFTQCAFRG-DHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 314 ~~~~g--s~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~-~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
.|.+. -+||..|..-+++. .-..+.-++.+.-+++.-.+.+.-++-+- ..++-+++++++.--..-|---.|
T Consensus 304 GFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKA 383 (424)
T KOG0652|consen 304 GFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKA 383 (424)
T ss_pred CCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhhee
Confidence 55554 45666665444432 21234556666666555555665555332 244556777665433222223344
Q ss_pred eeeecccc
Q 000202 386 LKVLGCYL 393 (1866)
Q Consensus 386 l~~~g~~L 393 (1866)
+-+=|+.+
T Consensus 384 VcVEAGMi 391 (424)
T KOG0652|consen 384 VCVEAGMI 391 (424)
T ss_pred eehhhhHH
Confidence 54545544
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.87 Score=53.95 Aligned_cols=36 Identities=14% Similarity=-0.110 Sum_probs=28.1
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhcc-ccceEEEE
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFAC 244 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 244 (1866)
-.++.|.|.+|+||||+|.+++.....+ -..++|+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 4478899999999999999998876544 34566664
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.8 Score=49.15 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.1
Q ss_pred cEEEEEEecCCCchhHHHHHHHH
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFN 231 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~ 231 (1866)
...|+++|++|+|||||...+..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhc
Confidence 34678999999999999999875
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.1 Score=47.11 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=21.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
+|+|.|.+|+||||+|+++.+++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.38 Score=56.32 Aligned_cols=101 Identities=11% Similarity=0.182 Sum_probs=53.1
Q ss_pred eEEEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHHHHHHHHHHhhhhhhhccCeEEEEEEccC
Q 000202 709 VRILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSEIRRAENMADLSERLLVVLDDVC 788 (1866)
Q Consensus 709 l~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~r~LlVlddv~ 788 (1866)
-.-+-++|..|+|||.||+.+.+.-. +++-...+++... +++..+...+.... .......+-=||||||+-
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~-~~~g~~v~y~~~~------~l~~~l~~~~~~~~--~~~~~~~~~dlLiIDDl~ 187 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM-RKKGVPVLYFPFV------EGFGDLKDDFDLLE--AKLNRMKKVEVLFIDDLF 187 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh-hhcCceEEEEEHH------HHHHHHHHHHHHHH--HHHHHhcCCCEEEEeccc
Confidence 35677999999999999999986432 2212334555432 33333322221111 111223344599999992
Q ss_pred C-----CChHHHH--HHHHhcccCCCCCcEEEEecCC
Q 000202 789 D-----IDDEELH--NFRLLISNMRDSGSCFLVTTHS 818 (1866)
Q Consensus 789 ~-----~~~~~w~--~~~~~l~~~~~~gs~iivttr~ 818 (1866)
. +...+|. .+...+...-.++..+|+||..
T Consensus 188 ~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 188 KPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred cccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 2 2112443 3554443222234557777753
|
|
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.11 Score=57.55 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=23.0
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..+|+|.|.+|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998653
|
|
| >CHL00206 ycf2 Ycf2; Provisional | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.74 Score=65.09 Aligned_cols=27 Identities=11% Similarity=0.115 Sum_probs=23.4
Q ss_pred CCcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 207 AGVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 207 ~~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
...+-|.++|++|+|||.||+++|...
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc
Confidence 346679999999999999999999864
|
|
| >KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.23 E-value=3.7 Score=52.47 Aligned_cols=134 Identities=16% Similarity=0.192 Sum_probs=82.9
Q ss_pred cCCCceeehhhHHHHHHhhhcC--C-CCcEEEEEEecCCCchhHHHHHHHHhhh-----ccccceEEEEeeccccccccH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTG--S-AGVYKLGIWGIGGIGKTTIAGAVFNKIS-----RHFEGSYFACNVRAAEETGRL 255 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~--~-~~~~~i~I~G~gGiGKTtLA~~~~~~~~-----~~f~~~~~~~~~~~~~~~~~~ 255 (1866)
.+..+-+|+.+..+|+..+..- . ..-..+-|.|.+|+|||..+..|.+.+. ..-+...|+..-+- .-...
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm--~l~~~ 471 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGL--RLASP 471 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcce--eecCH
Confidence 4567889999999999988731 1 2344788999999999999999998433 22233334432221 22234
Q ss_pred HHHHHHHHHHHhccccccCccchhHHHHHHHhh-----cCcEEEEEecCCC-----HHHHHHHhhccCCC-CCCCEEEEE
Q 000202 256 DDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA-----RKKVLIVFDDVNH-----PRQIELLIGRLDRF-ASGSQVIIT 324 (1866)
Q Consensus 256 ~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~-----~k~~LlVlDdv~~-----~~~~~~l~~~~~~~-~~gs~IiiT 324 (1866)
..+...|...+.+... ......+.+..+.. .+.+++++|+++. .+.+-.| +.|- .++|+++|.
T Consensus 472 ~~~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~---fdWpt~~~sKLvvi 545 (767)
T KOG1514|consen 472 REIYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNI---FDWPTLKNSKLVVI 545 (767)
T ss_pred HHHHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHH---hcCCcCCCCceEEE
Confidence 6677777777665543 22223345555543 4678899998863 2223333 3332 468887765
Q ss_pred c
Q 000202 325 T 325 (1866)
Q Consensus 325 T 325 (1866)
+
T Consensus 546 ~ 546 (767)
T KOG1514|consen 546 A 546 (767)
T ss_pred E
Confidence 4
|
|
| >PRK04040 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.13 Score=56.95 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.8
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+|+|+|++|+||||+++.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998774
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1866 | ||||
| 3jrn_A | 176 | Crystal Structure Of Tir Domain From Arabidopsis Th | 4e-30 | ||
| 3ozi_A | 204 | Crystal Structure Of The Tir Domain From The Flax D | 1e-24 | ||
| 4fcg_A | 328 | Structure Of The Leucine-Rich Repeat Domain Of The | 4e-04 | ||
| 2o6q_A | 270 | Structural Diversity Of The Hagfish Variable Lympho | 5e-04 |
| >pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176 | Back alignment and structure |
|
| >pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204 | Back alignment and structure |
|
| >pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328 | Back alignment and structure |
|
| >pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204 | Back alignment and structure |
|---|
Score = 276 bits (709), Expect = 2e-85
Identities = 63/181 (34%), Positives = 99/181 (54%), Gaps = 3/181 (1%)
Query: 1 MASSSSSPPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDND-LKRGDEIP 59
++ S++ Y+VFLSFRG DTR+ FT LY +L + + TF D+D L +G EI
Sbjct: 21 ISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIG 80
Query: 60 ESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYG-QIVIPVFYRVDPSHVRK 118
+LL I+ S I + I S YA SKWCL EL +I+ + +I++P+FY VDPS VR
Sbjct: 81 PNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRH 140
Query: 119 QIGSFGDSFFMLEERF-PYKMRNWRSALTEAADLSGFDSCVIRPESRLVADIANEVLERL 177
Q G + +F +F ++NW+ AL + DL G+ + + ++ ++ +
Sbjct: 141 QTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHI 200
Query: 178 D 178
Sbjct: 201 S 201
|
| >3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176 | Back alignment and structure |
|---|
Score = 269 bits (691), Expect = 2e-83
Identities = 73/178 (41%), Positives = 98/178 (55%), Gaps = 8/178 (4%)
Query: 5 SSSPPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDND-LKRGDEIPESLL 63
SS YDVFLSFRG DTR NF S LY L + ++ TF D+ L+ G L
Sbjct: 2 SSHTAT----KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELK 57
Query: 64 GTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQIGSF 123
IE S ++++ SE YA+S WCLDEL+ I++ ++ V+P+FY V+P+HVR Q G
Sbjct: 58 SPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVL 117
Query: 124 GDSFFMLEERF-PYKMRNWRSALTEAADLSGFDSCVIRPESRLVADIANEVLERLDDT 180
+ F R P K+ WR ALT A LSG S +S+LV IANE+ +
Sbjct: 118 AEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLVDKIANEISNKKTIY 173
|
| >3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154 | Back alignment and structure |
|---|
Score = 213 bits (545), Expect = 4e-64
Identities = 25/146 (17%), Positives = 59/146 (40%), Gaps = 5/146 (3%)
Query: 2 ASSSSSPPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDN-DLKRGDEIPE 60
++++ +D+F+S ED + +F L L E + D+ L+ GD +
Sbjct: 9 PTTNADLTSAPP--HDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRR 65
Query: 61 SLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQI 120
S+ + +S I++ S + +W EL + + + + ++P++++V V
Sbjct: 66 SIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFS 125
Query: 121 GSFGDSFFMLEERFPY-KMRNWRSAL 145
+ D ++ A+
Sbjct: 126 PTMADKLAFNTSTKSVDEIVADLMAI 151
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 168 bits (425), Expect = 6e-42
Identities = 107/721 (14%), Positives = 226/721 (31%), Gaps = 193/721 (26%)
Query: 26 DTRDNFTSHLYSALCQNNVETFI-DNDLKRGDEIPESLLGTIEASTISIIIFSEKYASSK 84
D + Y + + F+ + D K ++ + + I II SK
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCK---DVQDMPKSILSKEEIDHII------MSK 58
Query: 85 WCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQIGSFGDSFFMLEERFPYKMRNWRSA 144
+ L++ + + ++ F + L + + M +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKF--------------VEEV---LRINYKFLMSPIK-- 99
Query: 145 LTEAADLSGFDSCVIRPESRLVADIANEVLERLDDTFQSESKDLIGVEWRIKEIESL--- 201
TE S ++ + E +RL + Q +K + R++ L
Sbjct: 100 -TEQRQPS------------MMTRMYIEQRDRLYNDNQVFAKYNV---SRLQPYLKLRQA 143
Query: 202 ---LRTGSAGVYKLGIWGIGGIGKTTIAGAVFN--KISRHFEGSYFACNVRAAEETGRLD 256
LR + I G+ G GKT +A V K+ + F N++ +
Sbjct: 144 LLELRPAK----NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 257 DLRKELLSKLLND--RNVKNFQNISVNFQS--KRLAR-------KKVLIVFDDVNHPRQI 305
++ ++LL ++ + + NI + S L R + L+V +V + +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 306 ELLIGRLDRFASGSQVIITTRDKQV---LTNCEVDHIYQMKE---LVHADAHKLFTQCAF 359
+ F ++++TTR KQV L+ HI L + L +
Sbjct: 260 -------NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-- 310
Query: 360 RGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIVPHMEIQEV 419
LD +L + L P L + S + + + V ++ +
Sbjct: 311 ----LDCRPQDLPREVLT---TNPRRLS-----IIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 420 LKISYDSLD--DSQKRMHDLLRAMGREIVRKESIVDPGKRSRLWHDEDIYEVLKKNTGTE 477
++ S + L+ + +K L + + + S +W D +V
Sbjct: 359 IESSLNVLEPAEYRKMFDRL------SVFPPSAHIPTILLSLIWFDVIKSDV-------M 405
Query: 478 AIKDISLNMSDNEKEIFARTFSTMTNLGHLKAYESREIKDVMSDLEVVPFPEVYA--KNL 535
+ + S EK+ T S I + +L+ V YA +++
Sbjct: 406 VVVNKLHKYSLVEKQPKESTIS---------------IPSIYLELK-VKLENEYALHRSI 449
Query: 536 VSLKMWDGKVKERWDDVQKVDVECDRLDSHARAYW-NHTDLKQLRLKLAEVRYLLQDAVR 594
V + ++ + D + D + + Y+ +H + + L++
Sbjct: 450 V----------DHYNIPKTFDSD-DLIPPYLDQYFYSH---------IG---HHLKNIEH 486
Query: 595 CGADQNLNIDTWFKDLRGLTYEVDELIDNWEQSEISKSMFDREIRRIHQQLVRLLNLFHK 654
++ F D R + + +I +LN +
Sbjct: 487 --PERMTLFRMVFLDFR------------FLEQKIRHDSTAWNASG------SILNTLQQ 526
Query: 655 LATGHYEESSAVSELSSRRSDDYAVSENDLAVSER--DLVHFINKVNYELLRD--VNMVR 710
L Y+ Y + +ND ++ F+ K+ L+ +++R
Sbjct: 527 LKF--YK--------------PY-ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
Query: 711 I 711
I
Sbjct: 570 I 570
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 2e-33
Identities = 90/631 (14%), Positives = 192/631 (30%), Gaps = 153/631 (24%)
Query: 889 KAVINSDLSGCSVVLSESVPASDTDSMSFLFEDPASRL------ENLKED------QMKY 936
K++++ ++ S T + + + E L+ + +K
Sbjct: 43 KSILSK--EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 937 SPQPDKQAIPKGEDQTNPILNICVKQPVEPIPVIKLGTSNVTAVNYTQRNVRKIFRYVND 996
+ +Q + + N Q V +L + +R
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYN--DNQVFAKYNVSRL--QPYLKLRQALLELRP------- 149
Query: 997 VTASKIGVYGVGGIGKTA-ALKALISYPEVKVMFHVIIWVTVSRYWNTR---KIQKQVLR 1052
A + + GV G GKT AL +SY M I W+ + + ++ +++L
Sbjct: 150 --AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 1053 QLSLHCKDRETDAQ--------VAEKLWQVLNGEKF---LLLLDDVWEQIDLEAVGIPVP 1101
Q+ + R + + +L ++L + + LL+L +V A +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL--- 264
Query: 1102 GSENGSKIFMASRE------LDVCRNMDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDI 1155
KI + +R L +++ TL+ + L K + Q
Sbjct: 265 ----SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD--- 317
Query: 1156 HLYARAIVKGCCGLPLLTIVTAKALAGERNVS-VWKHASRKFSLPITIEECCTEDLIELL 1214
L P + A+++ WKH + + L ++
Sbjct: 318 -LPREV----LTTNPRRLSIIAESIRDGLATWDNWKHVN-------------CDKLTTII 359
Query: 1215 KFSFDQLKDHDVKSCFLHCSLFPEDREVSI---------VEFIDYCIQEGIIVGTLANAH 1265
+ S + L+ + + F S+FP I + I +
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPS--AHIPTILLSLIWFDVIKSDVMV----------- 406
Query: 1266 KRGHQIVDVLVDASLLLINEVHNSIRMPGLMKDLAFGILSSSTGDRCFLSTAEGFQFLSR 1325
+V+ L SL+ ++I +P + +L E L R
Sbjct: 407 -----VVNKLHKYSLVEKQPKESTISIPSIYLEL--------------KVKLENEYALHR 447
Query: 1326 ----AYSRLAELPNAGTSSLRSPERSRLFIPEAYQFLLGARAG--LTEPPSEEEWTHAKM 1379
Y+ + P + Y + G L E T +M
Sbjct: 448 SIVDHYNIPKTFDSDDL----IPPYLDQYF---YSHI-----GHHLKNIEHPERMTLFRM 495
Query: 1380 IF----FMDNDL-QTLPGRPSCPNLLTLFLQ-RNCRLRVIP--PSFFELMTSLKVLNLSK 1431
+F F++ + + ++L Q + + + P + L+ ++
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI------L 549
Query: 1432 TRIKSLPETLVNLKC---LQILILRDCDFLF 1459
+ + E L+ K L+I ++ + + +F
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 108 bits (269), Expect = 2e-23
Identities = 90/664 (13%), Positives = 193/664 (29%), Gaps = 164/664 (24%)
Query: 573 TDLKQLRLKLAEVRYLLQDAVRCGADQNLNIDTWFKD----LRGL--TYEVDELIDNWEQ 626
+ + + + ++ + +DA D KD + + E+D +I + +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFD--------CKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 627 SEISKSMFD---REIRRIHQQLVR-LLN-----LFHKLATGHYEESSAVSELSSRRSDDY 677
+ +F + + Q+ V +L L + T + S +R Y
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 678 AVSE--NDLAVSERDLVHFINKVNYELLRDVNMVRILPISGMSGTGRTVLAQRVYSNKKV 735
++ VS + + EL N++ I G+ G+G+T +A V + KV
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL----IDGVLGSGKTWVALDVCLSYKV 176
Query: 736 KSHFPFR-FWFSVSK------------NL--DLSTVLNAIAVQFSEIR-RAENMADLSER 779
+ F+ FW ++ L + + + S I+ R ++ R
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 780 L---------LVVLDDVCDIDDEELHNFRLLISNMRDSGSC-FLVTTHSHRVATMMSS-- 827
L L+VL +V + N C L+TT +V +S+
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLS-----------CKILLTTRFKQVTDFLSAAT 285
Query: 828 ----VSEGQLISLLKLDSEGYFKSELAPSVGAAQSPVLEHGQNLRL--MTPESL-VMTET 880
+ ++L + + L P N R + ES+ T
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 881 -QRHSTSGCKAVINSDLSGCSVVLSESVPASDTDSMSFLFED----------PASRLENL 929
C + ++ S+ + +F+ P L +
Sbjct: 344 WDNWKHVNCDKLTT--------IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 930 KEDQMKYSPQPDKQAIPKGEDQTNPILNICVKQPVEPIPVIKLGTSNVTAVNYTQRNVRK 989
D +K ++N K +
Sbjct: 396 WFDVIKSDVM--------------VVVNKLHKYSL------------------------- 416
Query: 990 IFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQ 1049
+ + + S I + + L+ + + H I V Y +
Sbjct: 417 VEKQPKE---STISIPSI-------YLELKVKLENEYAL-HRSI---VDHYNIPKTFDSD 462
Query: 1050 VLRQLSLHCKDRETDAQVAEKLWQVLNGEKF----LLLLDDVWEQIDLEAVGIPVPGSEN 1105
L D+ + + L + + E+ ++ LD + + + S +
Sbjct: 463 ---DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 1106 GSKIFMASR--ELDVCRNMDVN--MVVKLETLSMKDAWELFCKEVGGIIQ----SPDIHL 1157
+ + +C N +V + K L C + +++ + D +
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Query: 1158 YARA 1161
+ A
Sbjct: 580 FEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.0 bits (186), Expect = 1e-13
Identities = 109/666 (16%), Positives = 219/666 (32%), Gaps = 169/666 (25%)
Query: 1191 HASRKFSLPITIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCSLFPEDREVSIV--EFI 1248
H + +D++ + + +F + + D K +D SI+ E I
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAF--VDNFDCKDV--------QDMPKSILSKEEI 51
Query: 1249 DYCIQEG-------IIVGTLANAHKRGHQIVDVLVDASL-----LLINEVHNSIRMPGLM 1296
D+ I + TL + + ++V V+ L L++ + R P +M
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLS---KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 1297 KDLAFGILSSSTGDRCFLSTAEGFQ--FLSRAYSRLAELPNAGTSSLRSPERSRLFIPEA 1354
+ DR + + + F +SR +L A LR P
Sbjct: 109 TRM-----YIEQRDRLY-NDNQVFAKYNVSRL-QPYLKLRQA-LLELR---------PAK 151
Query: 1355 YQFLLG-ARAG---LTEPPSEEEWTHAKM---IFFMDNDLQTLPGRPSCPNLLTLFLQRN 1407
+ G +G + KM IF++ L + P + LQ+
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-----NL-KNCNSPETVLEMLQKL 205
Query: 1408 CRLRVIPPSFFEL---MTSLKV-LNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPP 1463
I P++ +++K+ ++ + ++ L ++ CL L+L +
Sbjct: 206 LYQ--IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVLLN--------- 252
Query: 1464 EVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDIL 1523
V + + +L K+L LT+ R+ V F S + +I L S L
Sbjct: 253 -VQNAKAWNAFNLS---CKIL------LTT-RFKQVTDFLSAATTTHISLDH---HSMTL 298
Query: 1524 SRLQALETLSIDVHPGDKRWDKDVKIVITEVSGL----TKLSSLSFHFPEIECVAEFLKG 1579
+ + L K + L + + +AE ++
Sbjct: 299 TPDEVKSLLL--------------KYLDCRPQDLPREVLTTNPRR-----LSIIAESIRD 339
Query: 1580 --SAWNNQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQH--DRCLRFVNGKNVPPEVIQI 1635
+ W+N +K V + +I+ + ++ + DR F ++P ++ +
Sbjct: 340 GLATWDN-----WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 1636 L----IHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPS 1691
+ I S V + L SL + I S L++K ++ + +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVE---KQPKESTISIPSIYLELKVKLENE-------YA 444
Query: 1692 LENLTLNH--------LWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLA 1743
L ++H DL + + F H HL+ + +
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYL----DQYFYS------HIGHHLK---NIEHPERMT 491
Query: 1744 KLEELTVEYC-LAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIWRNDWPSLE--- 1799
+ +++ L K I D +S +L +L++L+ + I ND P E
Sbjct: 492 LFRMVFLDFRFLEQK-IRHDSTAWNASGSILNTLQQLKFY----KPYICDND-PKYERLV 545
Query: 1800 --YISF 1803
+ F
Sbjct: 546 NAILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 1e-10
Identities = 99/774 (12%), Positives = 212/774 (27%), Gaps = 269/774 (34%)
Query: 171 NEVLERLDDTFQS--ESKDLIGVEWRI---KEIESLLRTGSA--GVYKLGIWGIGGIGKT 223
++L +D F + KD+ + I +EI+ ++ + A G +L W + +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL-FWTLLSKQEE 77
Query: 224 TIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRK--ELLSKLLNDRNVKNFQNISVN 281
+ V + +++ F + E+ R E +L ND + F +V+
Sbjct: 78 MVQKFVEEVLRINYK---FLMSPIKTEQRQPSMMTRMYIEQRDRLYND--NQVFAKYNVS 132
Query: 282 FQSKRLARKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVII--TTRDKQVLTNCEVDHI 339
L ++ L+ P + L+ G L SG + +V + I
Sbjct: 133 RLQPYLKLRQALLELR----PAKNVLIDGVL---GSGKTWVALDVCLSYKVQCKMD-FKI 184
Query: 340 YQMK-------ELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCY 392
+ + E V KL Q +D +T + ++ + L +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQ-------IDPNWTSRSD----HSSNIKLRI------ 227
Query: 393 LCGRSKEEWESAMRKLEIVPHMEIQEVLKISYDSLDDSQKRMHDLLRAMGREIVRKESIV 452
++ +R+L + + L + V+
Sbjct: 228 ------HSIQAELRRLLK------SKPYENCLLVLLN----------------VQNAKAW 259
Query: 453 ---DPGKR----SRLWHDEDIYEVLKKNTGTE-AIKDISLNMSDNE-KEIFARTFSTMTN 503
+ + +R + + + L T T ++ S+ ++ +E K + +
Sbjct: 260 NAFNLSCKILLTTR---FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK------Y 310
Query: 504 LGHLKAYESREIKDVMSDLEVVPFPEVYAKNLVSLKMWDGKVKERWDDVQKVDVECDRLD 563
L RE+ P ++++ + DG WD
Sbjct: 311 LDCRPQDLPREVLTTN------PR----RLSIIAESIRDGL--ATWD------------- 345
Query: 564 SHARAYWNHTDLKQLR---------LKLAEVRYLLQDAVRCGADQNLNIDTWF-KDLRGL 613
W H + +L L+ AE R + L++ F +
Sbjct: 346 -----NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR---------LSV---FPPSAH-I 387
Query: 614 TYEVDELIDNWEQSEISKSMFDREIRRIHQQLVRLLNLFHKLATGHYEESSAVSELSSRR 673
+ LI W ++ + +N HK + L ++
Sbjct: 388 PTILLSLI--WFDVI------KSDVMVV-------VNKLHKYS------------LVEKQ 420
Query: 674 SDDYAVSENDLA------VSERDLVH--FINKVNYELLRDVNMVRILPISGMSGTGRTVL 725
+ +S + + +H ++ N D + + +
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ--------- 471
Query: 726 AQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSEIRRAENMADLSERLLVVLD 785
Y + I I E M L
Sbjct: 472 ----YF-----------YSH--------------IGHHLKNIEHPERMTLFRMVFL---- 498
Query: 786 DVCDIDDEELHNFRLLISNMRDSGSCFLVTTHSHRVATMMSSVSEGQLISLLKLDSEGY- 844
+FR L +R + + + G +++ L + Y
Sbjct: 499 -----------DFRFLEQKIRHDST---------------AWNASGSILNTL-QQLKFYK 531
Query: 845 ---FKSELAPS--VGAAQSPVLEHGQNL-----------RLMTPESLVMTETQR 882
++ V A + + +NL LM + + E +
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 4e-08
Identities = 69/464 (14%), Positives = 144/464 (31%), Gaps = 120/464 (25%)
Query: 1456 DFLFV-LPPEVGSLECLEVLD-----LRGTEIKMLPKEIGKLTSLRYLTVFFFGSMY--- 1506
D L V V + +C +V D L EI + ++ L F ++
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL----FWTLLSKQ 75
Query: 1507 KSEYIKLPPDLISSD---ILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSL 1563
+ K +++ + ++S ++ T + + + + + K
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIK---TEQRQPSMMTRMYIEQRDRLYNDNQVFAK---- 128
Query: 1564 SFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDV----KSIVSWVTDYVQCDYNQHDRC 1619
++ ++ + L+ + +L K V+ V K+ WV V Y +
Sbjct: 129 -YNVSRLQPYLK-LRQAL---LELRPAKNVLIDGVLGSGKT---WVALDVCLSYKVQCK- 179
Query: 1620 LRFVNG--------KNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISE 1671
N P V+++L + S SD + S +K I S
Sbjct: 180 --MDFKIFWLNLKNCNSPETVLEML---QKLLYQIDPNWTSRSD----HSSNIKLRIHSI 230
Query: 1672 CLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLE 1731
+++ ++ +K + L L L ++ + W +F +C+ L
Sbjct: 231 QAELRRLLKSKPYEN----CL--LVLLNVQNAK-AWN------AFN-------LSCKIL- 269
Query: 1732 YVFT--CSMIQFLA-------KLEE----LTVEYCLAVKSIILDGEITYSSCIMLPSLKK 1778
+ T + FL+ L+ LT + ++ LD LP
Sbjct: 270 -LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-----DLPREVL 323
Query: 1779 ----LRLHHLPELANIWRNDWPSLEYISFYGCPKLKKMGMDSKLK-----------ETL- 1822
RL + E W + C KL + ++S L + L
Sbjct: 324 TTNPRRLSIIAESIRDGLATW---DNWKHVNCDKLTTI-IESSLNVLEPAEYRKMFDRLS 379
Query: 1823 -----IWIKAE--KKWWAELEWEDTQLPIDLGDRLSIFSEDDED 1859
I W ++ D + ++ + S+ + ++
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 1e-37
Identities = 42/326 (12%), Positives = 110/326 (33%), Gaps = 27/326 (8%)
Query: 1002 IGVYGVGGIGKTA-ALKALISYPEV-KVMFHVIIWVTVSR---------YWNTRKIQKQV 1050
+ ++G G GK+ A +AL ++ + + I+W+ S + + + K
Sbjct: 155 LFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSE 214
Query: 1051 LRQLSLHCKDRETDAQVAEKLWQVL-NGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKI 1109
L+ + T + + L + L + DDV ++ + E +
Sbjct: 215 DDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIR------WAQELRLRC 268
Query: 1110 FMASRELDVCRNMDVNM-VVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCG 1168
+ +R++++ +++ +L + + ++ + ++ G
Sbjct: 269 LVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSG 328
Query: 1169 LPLLTIVTAKALAGERNVSVWKHASRKFSLPITIEECCT----EDLIELLKFSFDQLKDH 1224
P ++ K+ + + + ++ S + EC T + L L+ + L D
Sbjct: 329 NPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDE 388
Query: 1225 DVKSCFLHCSLFPEDREVSIVEFIDYCIQEGIIVGTLANAHKRGHQIVDVLVDASLLLIN 1284
D +S + P ++ V+ I I + L LL
Sbjct: 389 D-RSALAFAVVMPPGVDIP-VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSG 446
Query: 1285 EVHN--SIRMPGLMKDLAFGILSSST 1308
+ + ++ ++ ++ + T
Sbjct: 447 KRMPVLTFKIDHIIHMFLKHVVDAQT 472
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 3e-33
Identities = 50/343 (14%), Positives = 113/343 (32%), Gaps = 35/343 (10%)
Query: 118 KQIGSFGDSFFMLEERFPYKMRNWRSA-LTEAADLSGFDSCVIRPESRLVADIANEVLER 176
+ L + F Y ++ + L + D + + ++RP + +
Sbjct: 59 RIYRRQASELGPLIDFFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQMLDRK 118
Query: 177 LDDTFQSESKDLIGVEWRIKEI-ESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNK--- 232
L + E+ + + + L + L + G G GK+ IA +K
Sbjct: 119 LLLGNVPKQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ 178
Query: 233 -ISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVN--------FQ 283
I +++ + + A + DL ++L L ++ ++ NF ++
Sbjct: 179 LIGINYDSIVWLKDSGTAPK--STFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMIC 236
Query: 284 SKRLARKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCE-VDHIYQM 342
+ + R L VFDDV I + ++TTRD ++ ++
Sbjct: 237 NALIDRPNTLFVFDDVVQEETIRWA------QELRLRCLVTTRDVEISNAASQTCEFIEV 290
Query: 343 KELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWE 402
L + + + ++ +K ++ + G P L + ++ E+
Sbjct: 291 TSLEIDECYDFLEAYGMPMPVGEK-EEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMA 349
Query: 403 SAMRKLEIVPHMEIQ-----------EVLKISYDSLDDSQKRM 434
KLE + ++ L+ + L D +
Sbjct: 350 QLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSA 392
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 | Back alignment and structure |
|---|
Score = 80.4 bits (198), Expect = 2e-15
Identities = 40/312 (12%), Positives = 85/312 (27%), Gaps = 44/312 (14%)
Query: 556 DVECDRLDSHARAYWNHTDLKQLRLKLAEVRYL---LQDAVRCGADQNLNIDTWFKDLRG 612
++EC L + + + + L + + + + I + + R
Sbjct: 4 EIECRALSTAHTRLIHDFEPRDALTYLEGKNIFTEDHSELISKMSTRLERIANFLRIYRR 63
Query: 613 LTYEVDELIDNWEQSEISKSMFDREIRRIHQQLVRLLNLFHKLATGHYEESSAVSELSSR 672
E+ LID + + + + + L ++ R
Sbjct: 64 QASELGPLIDFFNYNN------QSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQMLDR 117
Query: 673 RSDDYAVSENDLAVSERDLVHFINKVNYELLRDVNMVRILPISGMSGTGRTVLAQRVYSN 732
+ V + V + K E+ + L + G +G+G++V+A + S
Sbjct: 118 KLLLGNVPKQMTCYIREYHVDRVIKKLDEMCDLDSFF--LFLHGRAGSGKSVIASQALSK 175
Query: 733 KK--VKSHFPFRFWFSVSKNL--DLSTVLNAIAVQFSEIRRAENMADLSE---------- 778
+ ++ W S + I + N +
Sbjct: 176 SDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMI 235
Query: 779 --------RLLVVLDDVCDIDDEELHNFRLLISNMRDSGSCFLVTTHSHRVATMMSSVSE 830
L V DDV + + LVTT ++ S E
Sbjct: 236 CNALIDRPNTLFVFDDVVQEETIRWAQ---------ELRLRCLVTTRDVEISNAASQTCE 286
Query: 831 GQLISLLKLDSE 842
I + L+ +
Sbjct: 287 --FIEVTSLEID 296
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 4e-33
Identities = 53/320 (16%), Positives = 111/320 (34%), Gaps = 45/320 (14%)
Query: 1002 IGVYGVGGIGKTAALKALISYPEVKVMFH--VIIWVTVSRY------WNTRKIQKQVLRQ 1053
+ ++G+ G GK+ + + + WV+V + + + ++ +
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD 209
Query: 1054 LSLHCKDRETDAQVAEKLWQVLNGE--KFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFM 1111
S + + ++L ++ + + LL+LDDVW+ L+A + +I +
Sbjct: 210 ESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFD-------SQCQILL 262
Query: 1112 ASRELDVCRNM--DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGL 1169
+R+ V ++ +V +L + E+ V + D+ A +I+K C G
Sbjct: 263 TTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNM--KKADLPEQAHSIIKECKGS 320
Query: 1170 PLLTIVTAKALAG-----ERNVSVWKHA--SRKFSLPITIEECCTEDLIELLKFSFDQLK 1222
PL+ + + +++F E L E + S + L
Sbjct: 321 PLV----VSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEML- 375
Query: 1223 DHDVKSCFLHCSLFPEDREVSIVEFIDYCIQEGIIVGTLANAHKRGHQIVDVLVDASLLL 1282
D+K + S+ +D +V E I+ V+ SLL
Sbjct: 376 REDIKDYYTDLSILQKDVKVPTKVLCILWDMETEE----------VEDILQEFVNKSLLF 425
Query: 1283 INEVHNSI--RMPGLMKDLA 1300
+ S + L D
Sbjct: 426 CDRNGKSFRYYLHDLQVDFL 445
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 9e-29
Identities = 52/273 (19%), Positives = 97/273 (35%), Gaps = 36/273 (13%)
Query: 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFN---KISRHFEGS 240
+ + + I+ L + I G+ G GK+ +A + F G
Sbjct: 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGG 181
Query: 241 YFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLAR------KKVLI 294
+V +++G L L + L ++L D + +++ RL + L+
Sbjct: 182 VHWVSVGKQDKSGLLMKL-QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL 240
Query: 295 VFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDH--IYQMKELVHADAHK 352
+ DDV L F S Q+++TTRDK V + + L +
Sbjct: 241 ILDDVWDSWV-------LKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLE 293
Query: 353 LFTQCAFRGD-HLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLE-- 409
+ + L E AH +K +G PL + ++G L WE +++L+
Sbjct: 294 ILSLFVNMKKADL----PEQAHSIIKECKGSPLVVSLIGALLRDFPN-RWEYYLKQLQNK 348
Query: 410 ---------IVPHMEIQEVLKISYDSLDDSQKR 433
+ + E + IS + L + K
Sbjct: 349 QFKRIRKSSSYDYEALDEAMSISVEMLREDIKD 381
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 3e-16
Identities = 51/297 (17%), Positives = 98/297 (32%), Gaps = 46/297 (15%)
Query: 575 LKQLRLKL---AEVRYLLQDAVRCGADQNLNIDTWFKDLRGLTYEVDELIDNWEQSEIS- 630
L Q R L + Y++ + G + ++ LI + +
Sbjct: 9 LLQHREALEKDIKTSYIMDHMISDGFLTISEEE-KVRNEPTQQQRAAMLIKMILKKDNDS 67
Query: 631 -----KSMFDREIRRIHQQLVRLLNLFHKLATGHYEESSAVSELSSRRSDDYAVSENDLA 685
++ + + L + + +G S S + + + +
Sbjct: 68 YVSFYNALLHEGYKDLAALLHDGIPVVSSS-SGKDSVSGITSYVRTVLCEGGVPQRPVVF 126
Query: 686 VSERDLVHFINKVNYELLRDVNMVRILPISGMSGTGRTVLAQRVYSN-KKVKSHFPFR-F 743
V+ + LV+ I + +L + + I GM+G G++VLA + ++ FP
Sbjct: 127 VTRKKLVNAIQQ---KLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVH 183
Query: 744 WFSVSK--NLDLSTVLNAIAVQFSE-----IRRAENMADLSERL-----------LVVLD 785
W SV K L L + + + R N+ + +RL L++LD
Sbjct: 184 WVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILD 243
Query: 786 DVCDIDDEELHNFRLLISNMRDSGSCFLVTTHSHRVATMMSSVSEGQLISLLKLDSE 842
DV D L F DS L+TT V + ++ + +
Sbjct: 244 DVWDSWV--LKAF--------DSQCQILLTTRDKSVTDSVMGPK--YVVPVESSLGK 288
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 3e-24
Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 28/163 (17%)
Query: 1384 DNDLQTLP---GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET 1440
L P R +L + + L +P + + L+ L L++ +++LP +
Sbjct: 90 SVPLPQFPDQAFR--LSHLQHMTI-DAAGLMELPDTMQQF-AGLETLTLARNPLRALPAS 145
Query: 1441 LVNLKCLQILILRDCDFLFVLPPEVGS---------LECLEVLDLRGTEIKMLPKEIGKL 1491
+ +L L+ L +R C L LP + S L L+ L L T I+ LP I L
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205
Query: 1492 TSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534
+L+ L + S L P + L LE L +
Sbjct: 206 QNLKSL------KIRNSPLSALGPA------IHHLPKLEELDL 236
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 8e-24
Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 24/164 (14%)
Query: 1385 NDLQTLP----------GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRI 1434
+L LP NL +L L +R +P S L +LK L + + +
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLRL-EWTGIRSLPASIANL-QNLKSLKIRNSPL 218
Query: 1435 KSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRG-TEIKMLPKEIGKLTS 1493
+L + +L L+ L LR C L PP G L+ L L+ + + LP +I +LT
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278
Query: 1494 LRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVH 1537
L L + + P LI ++L A + + H
Sbjct: 279 LEKL------DLRGCVNLSRLPSLI-----AQLPANCIILVPPH 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 4e-18
Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 10/135 (7%)
Query: 1365 LTEPPSE-EEWTHAKMIFFMDNDLQTLPGRPS---CPNLLTLFLQRNCRLRVIPPSFFEL 1420
+ P+ + K + ++ L L P+ P L L L+ LR PP F
Sbjct: 195 IRSLPASIANLQNLKSLKIRNSPLSALG--PAIHHLPKLEELDLRGCTALRNYPPIFGGR 252
Query: 1421 MTSLKVLNLS-KTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGT 1479
LK L L + + +LP + L L+ L LR C L LP + L ++ +
Sbjct: 253 -APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311
Query: 1480 EIKMLPKEIGKLTSL 1494
L + +
Sbjct: 312 LQAQLDQHR--PVAR 324
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 4e-13
Identities = 20/142 (14%), Positives = 47/142 (33%), Gaps = 19/142 (13%)
Query: 1396 CPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDC 1455
L+ Q + L + ++++ + + N QI R
Sbjct: 11 SSGRENLYFQGSTAL----RPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE-TRTG 65
Query: 1456 DFLFVLPPEVGSL--ECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKL 1513
L + L+LR + P + +L+ L+++ ++ + ++L
Sbjct: 66 RALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHM------TIDAAGLMEL 119
Query: 1514 PPDLISSDILSRLQALETLSID 1535
P + + LETL++
Sbjct: 120 PDT------MQQFAGLETLTLA 135
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 5e-19
Identities = 69/441 (15%), Positives = 139/441 (31%), Gaps = 75/441 (17%)
Query: 1383 MDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETL 1441
++P + +L L N ++ I +L+VL L +RI ++ +
Sbjct: 13 RSRSFTSIP-SGLTAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAF 70
Query: 1442 VNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPK--EIGKLTSLRYLT 1498
+L L+ L L D L L G L L+ L+L G + L LT+L+ L
Sbjct: 71 YSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL- 128
Query: 1499 VFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVS--- 1555
+ E I + L +L L I + +
Sbjct: 129 -----RIGNVETFS----EIRRIDFAGLTSLNELEIK------------ALSLRNYQSQS 167
Query: 1556 --GLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYVQCDY 1613
+ + L+ H E + E L+ +++ D + +
Sbjct: 168 LKSIRDIHHLTLHLSESAFLLEIF------ADILSSVRYLELRDTNLARFQFSPLPVDEV 221
Query: 1614 NQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECL 1673
+ + L F ++L + + G+G + + ++SE
Sbjct: 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE-- 279
Query: 1674 KIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFA---ELRILSIHACRHL 1730
+E +T+ L + + ++ +++ +++ +
Sbjct: 280 ---------------LGKVETVTIRRL-HIPQFYLFYDLSTVYSLLEKVKRITVENS-KV 322
Query: 1731 EYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCI-MLPSLKKLRLHH-----L 1784
V CS Q L LE L + L +++ + S+C PSL+ L L +
Sbjct: 323 FLV-PCSFSQHLKSLEFLDLSENL-----MVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376
Query: 1785 PELANIWRNDWPSLEYISFYG 1805
+ I +L +
Sbjct: 377 QKTGEILLT-LKNLTSLDISR 396
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 3e-13
Identities = 66/449 (14%), Positives = 148/449 (32%), Gaps = 74/449 (16%)
Query: 1384 DNDLQTLPGRP--SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETL 1441
+ + T+ G S +L L L N L + S+F ++SLK LNL ++L T
Sbjct: 59 SSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117
Query: 1442 V--NLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYL 1497
+ NL LQ L + + + + L L L+++ ++ + + + + +L
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177
Query: 1498 TVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGL 1557
T+ + L ++ L + D + +
Sbjct: 178 TL-----------HLSESAFLLEIFADILSSVRYLELR----DTNLARFQFSPLPVDEVS 222
Query: 1558 TKLSSLSFHFPEI-ECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQH 1616
+ + L+F + + L +L+E +F + + + + + D
Sbjct: 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF-DDCTLNGLGDF--NPSESDVVSE 279
Query: 1617 DRCLRFVNGKNVPPEVIQI-LIHSTAFYVDHHLSIVSLSDFGVGYMSG--------LKFC 1667
+ V + + + ST + + + +++ + V + L+F
Sbjct: 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339
Query: 1668 IISECLKIKTVVDTKEHTTAVFPSLENLTL--NHLWDLTCIWQ----------------- 1708
+SE + +PSL+ L L NHL + +
Sbjct: 340 DLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398
Query: 1709 -GILPEGSF--AELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCL---------AV 1756
+P+ ++R L++ + + V TC LE L V +
Sbjct: 399 FHPMPDSCQWPEKMRFLNLSSTG-IRVVKTC----IPQTLEVLDVSNNNLDSFSLFLPRL 453
Query: 1757 KSIILDG-EITY-SSCIMLPSLKKLRLHH 1783
+ + + ++ + P L +++
Sbjct: 454 QELYISRNKLKTLPDASLFPVLLVMKISR 482
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-10
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 11/116 (9%)
Query: 1384 DNDLQTLPGRPSCP-NLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLV 1442
N +P P + L L +RV+ +L+VL++S + S L
Sbjct: 396 RNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKTCIP---QTLEVLDVSNNNLDSFSLFLP 451
Query: 1443 NLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYL 1497
L Q L + L LP L V+ + ++K +P I +LTSL+ +
Sbjct: 452 RL---QELYISRN-KLKTLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-05
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLS 1430
N L+TLP P LL + + RN +L+ +P F+ +TSL+ + L
Sbjct: 460 RNKLKTLPDASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLH 505
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 4e-17
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 6/119 (5%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIP-PSFFELMTSLKVLNLSKTRIKSLPET 1440
+N + L + L L+ N + + +L+ LNL I +
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKG- 186
Query: 1441 LVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTV 1499
V L+ L L L + PE S + + LR ++ ++ K + +L + +
Sbjct: 187 QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL 244
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 3e-15
Identities = 17/116 (14%), Positives = 47/116 (40%), Gaps = 6/116 (5%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP--ETL 1441
+N++ + ++L N ++ ++ + ++ L+L I ++ E
Sbjct: 108 NNNISRVSCS-RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165
Query: 1442 VNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL 1497
+ L+ L L+ F++ + +V L+ LDL ++ + E + ++
Sbjct: 166 ASSDTLEHLNLQYN-FIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWI 219
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 1e-11
Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 3/115 (2%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
N + + G+ L TL L N +L + P F + ++L ++ + + L
Sbjct: 178 YNFIYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSA-AGVTWISLRNNKLVLIEKALRF 235
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLT 1498
+ L+ LR + V + +K L + + ++ L
Sbjct: 236 SQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 5e-11
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 10/116 (8%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
N L S L TL L N ++ + S++ L+ + I + +
Sbjct: 67 SNVLYETLDLESLSTLRTLDLNNN-YVQELLV-----GPSIETLHAANNNISRVSCS--R 118
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE--IGKLTSLRYL 1497
+ + + L + + + G ++ LDL+ EI + +L +L
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 7e-11
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 8/102 (7%)
Query: 1397 PNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDC 1455
+ + L+ S + ++K L+LS + + L L++L L
Sbjct: 10 NRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL 1497
+ ++ SL L LDL ++ L S+ L
Sbjct: 69 --VLYETLDLESLSTLRTLDLNNNYVQELL----VGPSIETL 104
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 3e-09
Identities = 12/84 (14%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 1415 PSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEV 1473
+ K+ ++ + +K + ++ L L + ++ LE+
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 1474 LDLRGTEIKMLPKEIGKLTSLRYL 1497
L+L + ++ L++LR L
Sbjct: 63 LNLSSNVLYETL-DLESLSTLRTL 85
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 1436 SLPETLVNLKCLQILILRDCDFLFVLPPEVGS-LECLEVLDLRGTEIKMLP-KEIGKLTS 1493
++ E N +I + D L + ++ LDL G + + ++ T
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59
Query: 1494 LRYL 1497
L L
Sbjct: 60 LELL 63
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 5e-17
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
N+L + P L+ + L N L I F M L+ L +S R+ +L
Sbjct: 235 HNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP 293
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTV 1499
+ L++L L L + + LE L L I L + +L+ LT+
Sbjct: 294 IPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTL 346
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 2e-14
Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 16/164 (9%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-T 1440
++ ++ LP S + L L ++ I F +++ L + I+ LP
Sbjct: 54 NSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 112
Query: 1441 LVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYL- 1497
N+ L +L+L D L LP + + L L + ++ + + TSL+ L
Sbjct: 113 FQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171
Query: 1498 ------TVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSID 1535
T + + + +L+S+ L+ A+E L
Sbjct: 172 LSSNRLTHVDLSLIPSLFHANVSYNLLST--LAIPIAVEELDAS 213
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 7e-13
Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 1397 PNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDC 1455
N + + + +R +P + + +++LNL+ +I+ + +Q L +
Sbjct: 45 NNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103
Query: 1456 DFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYL 1497
+ LPP V ++ L VL L ++ LP+ I L L
Sbjct: 104 -AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 23/153 (15%), Positives = 47/153 (30%), Gaps = 41/153 (26%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFF----------------ELMTSLK 1425
+N+L+ + + +L L L N RL + S + +++
Sbjct: 150 NNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVE 208
Query: 1426 VLNLSKTRIKSLPE--------------------TLVNLKCLQILILRDCDFLFVLPPEV 1465
L+ S I + L+N L + L + L +
Sbjct: 209 ELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHP 267
Query: 1466 -GSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL 1497
++ LE L + + L + +L+ L
Sbjct: 268 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 83.8 bits (207), Expect = 2e-16
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 4/115 (3%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
N+L + P L+ + L N L I F M L+ L +S R+ +L
Sbjct: 241 HNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP 299
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLT 1498
+ L++L L L + + LE L L I L + +L+ LT
Sbjct: 300 IPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLT 351
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 73.8 bits (181), Expect = 3e-13
Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-T 1440
++ ++ LP S + L L ++ I F +++ L + I+ LP
Sbjct: 60 NSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 118
Query: 1441 LVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYL 1497
N+ L +L+L D L LP + + L L + ++ + + TSL+ L
Sbjct: 119 FQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 2e-12
Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 5/116 (4%)
Query: 1385 NDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVN 1443
D+ + N + + + +R +P + + +++LNL+ +I+ +
Sbjct: 39 QDVYFGFEDITLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY 97
Query: 1444 LKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYL 1497
+Q L + + LPP V ++ L VL L ++ LP+ I L L
Sbjct: 98 AHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 1e-11
Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 8/118 (6%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ET 1440
D ++ + + L++ N +R +PP F+ + L VL L + + SLP
Sbjct: 84 DLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 142
Query: 1441 LVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL 1497
N L L + + + L + + + L+ L L + + + + SL +
Sbjct: 143 FHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHA 197
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 2e-08
Identities = 52/389 (13%), Positives = 112/389 (28%), Gaps = 70/389 (17%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFE----------------LMTSLK 1425
+N+L+ + + +L L L N RL + S + +++
Sbjct: 156 NNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVE 214
Query: 1426 VLNLSKTRIKSLPE--------------------TLVNLKCLQILILRDCDFLFVLPPEV 1465
L+ S I + L+N L + L + L +
Sbjct: 215 ELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHP 273
Query: 1466 -GSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILS 1524
++ LE L + + L + +L+ L + + + + +
Sbjct: 274 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVL------DLSHNHLLHVERN------QP 321
Query: 1525 RLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNN 1584
+ LE L +D IV ++S L +L+ + +C +
Sbjct: 322 QFDRLENLYLD----------HNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVAR 371
Query: 1585 QQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYV 1644
+ + D + + D DR L+++ +V +V + +A
Sbjct: 372 PAVDDADQHCKIDYQLEHGLCCK--ESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDT 429
Query: 1645 DHHL--SIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWD 1702
+ + ++ G + G + V L+ L +
Sbjct: 430 INSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTN 489
Query: 1703 LTCIWQGILPEGSFAELRILSIHACRHLE 1731
L + LP+ A HL+
Sbjct: 490 LR---RYRLPKDGLARSSDNLNKVFTHLK 515
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 2e-16
Identities = 54/298 (18%), Positives = 114/298 (38%), Gaps = 28/298 (9%)
Query: 189 IGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAV---FNKISRHFEGSYFACN 245
+ + + I+ L + + I+G+ G GK+ +A + + F G +
Sbjct: 127 VTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS 186
Query: 246 VRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA------RKKVLIVFDDV 299
+ +++G L L+ L +L + + +++ RL + L++ DDV
Sbjct: 187 IGKQDKSGLLMKLQ-NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDV 245
Query: 300 NHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDH--IYQMKELVHADAHKLFTQC 357
P L F + Q+++TTRDK V + + L ++ +
Sbjct: 246 WDPWV-------LKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLF 298
Query: 358 AFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIVPHMEIQ 417
+ AH +K +G PL + ++G L W +R+L+ I+
Sbjct: 299 V---NMKKEDLPAEAHSIIKECKGSPLVVSLIGALLR-DFPNRWAYYLRQLQNKQFKRIR 354
Query: 418 EVLKISYDSLDDSQKRMHDLLRAMGREIVR-----KESIVDPGKRSRLWHDEDIYEVL 470
+ Y++LD++ ++LR ++ ++ + P K + D + EV
Sbjct: 355 KSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVE 412
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 2e-11
Identities = 47/259 (18%), Positives = 105/259 (40%), Gaps = 27/259 (10%)
Query: 1002 IGVYGVGGIGKTA-ALKALISYPEVKVMF-HVIIWVTVSRYWNTRKIQKQVLRQLSLHCK 1059
+ +YG+ G GK+ A +A+ + ++ F + WV++ + + ++ +
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI-GKQDKSGLLMKLQNLCMRLDQ 208
Query: 1060 DRETDAQVAEKL---------WQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIF 1110
+ ++ + + + LL+LDDVW+ L+A N +I
Sbjct: 209 EESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFD-------NQCQIL 261
Query: 1111 MASRELDVCRNM--DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCG 1168
+ +R+ V ++ ++V L + E+ V ++ D+ A +I+K C G
Sbjct: 262 LTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVN--MKKEDLPAEAHSIIKECKG 319
Query: 1169 LPL-LTIVTA--KALAGERNVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQLKDHD 1225
PL ++++ A + + + +++F E L E + S + L D
Sbjct: 320 SPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEML-RED 378
Query: 1226 VKSCFLHCSLFPEDREVSI 1244
+K + S+ +D +V
Sbjct: 379 IKDYYTDLSILQKDVKVPT 397
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 2e-06
Identities = 30/127 (23%), Positives = 46/127 (36%), Gaps = 30/127 (23%)
Query: 710 RILPISGMSGTGRTVLAQR-VYSNKKVKSHFP-FRFWFSVSKNL--DLSTVLNAIAVQFS 765
+ I GM+G G++VLA V + ++ F W S+ K L L + ++
Sbjct: 148 GWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLD 207
Query: 766 E----------------IRRAENMADLSERLLVVLDDVCDIDDEELHNFRLLISNMRDSG 809
+ R M R L++LDDV D L F D+
Sbjct: 208 QEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW--DPWVLKAF--------DNQ 257
Query: 810 SCFLVTT 816
L+TT
Sbjct: 258 CQILLTT 264
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 7e-16
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 4/118 (3%)
Query: 1384 DNDLQTLP-GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETL 1441
N + T+ L L Q + ++ S F + +L L++S T +
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441
Query: 1442 VNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKML-PKEIGKLTSLRYL 1497
L L++L + F P++ L L LDL +++ L P L+SL+ L
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 8e-14
Identities = 37/157 (23%), Positives = 58/157 (36%), Gaps = 15/157 (9%)
Query: 1382 FMDNDLQTLPGRPSCPNLLTLFLQRNC--RLRVIPPSFFELMTSLKVLNLSKTRIKSLPE 1439
F N P+L L L RN S F TSLK L+LS + ++
Sbjct: 332 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVITMSS 390
Query: 1440 TLVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKML-PKEIGKLTSLRYL 1497
+ L+ L+ L + + + V SL L LD+ T ++ L+SL L
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450
Query: 1498 TVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534
M + + + DI + L+ L L +
Sbjct: 451 ------KMAGNSFQ----ENFLPDIFTELRNLTFLDL 477
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 2e-13
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 1385 NDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETL 1441
N L+ L S P L L L R ++ I ++ ++ L L L+ I+SL
Sbjct: 38 NPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96
Query: 1442 VNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML--PKEIGKLTSLRYL 1497
L LQ L+ + + + +G L+ L+ L++ I+ P+ LT+L +L
Sbjct: 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 2e-12
Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 5/119 (4%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PET 1440
+ +L L + N P F + +L L+LS+ +++ L P
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 1441 LVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEI--GKLTSLRYL 1497
+L LQ+L + +F + L L+VLD I K+ +SL +L
Sbjct: 490 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 3e-12
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 4/117 (3%)
Query: 1383 MDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETL 1441
M+ + +P + L L N LR + F L+VL+LS+ I+++
Sbjct: 15 MELNFYKIPDNLP-FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72
Query: 1442 VNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYL 1497
+L L LIL + L L+ L T + L IG L +L+ L
Sbjct: 73 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 1e-10
Identities = 75/414 (18%), Positives = 120/414 (28%), Gaps = 57/414 (13%)
Query: 1384 DNDLQTLPGRP--SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PET 1440
+ +L +L P L L + N P +F +T+L+ L+LS +I+S+
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Query: 1441 LVNLKCLQILILR-DCD--FLFVLPPEVGSLECLEVLDLRGTEI--KMLPKEIGKLTSLR 1495
L L + +L L D + + P L L LR ++ I L L
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228
Query: 1496 YLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVS 1555
+ L L L L + D D + + +
Sbjct: 229 VHRL---VLGEFRNEGNLEK--FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL----FN 279
Query: 1556 GLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQ 1615
LT +SS S IE V +F W + +L KF +
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF--------------GQFPTLKLK 325
Query: 1616 HDRCLRFVNGKNVPPEVIQILIHSTAFYVDH-HLSIVSLSDFGVGYMSGLKFCIISECLK 1674
+ L F + K L + LS + LK+ +S
Sbjct: 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-G 384
Query: 1675 IKTVVDTKEHTTAVFPSLENLTL--NHLWDLTCIWQGILPEGSFAE---LRILSIHACRH 1729
+ T+ LE+L ++L + + F L L I H
Sbjct: 385 VITM----SSNFLGLEQLEHLDFQHSNL-------KQMSEFSVFLSLRNLIYLDISHT-H 432
Query: 1730 LEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHH 1783
F + L+ LE L + L +L L L
Sbjct: 433 TRVAFN-GIFNGLSSLEVLKMAGNS------FQENFLPDIFTELRNLTFLDLSQ 479
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 6e-06
Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 20/115 (17%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PET 1440
L+ L S +L L + N + ++ + SL+VL+ S I + +
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537
Query: 1441 LVNL-KCLQILILR------DCDF---------LFVLPPEVGSLECLEVLDLRGT 1479
L + L L L C+ L EV +EC D +G
Sbjct: 538 LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 592
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 1e-15
Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 15/166 (9%)
Query: 1375 THAKMIFFMDNDLQTLPGR--PSCPNLLTLFLQRNC-RLRVIPPSFFELMTSLKVLNLSK 1431
+ A + N LQ+LP L L L N + TSLK L+LS
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 1432 TRIKSLPETLVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-G 1489
+ ++ + L+ L+ L + + + V SL L LD+ T ++ I
Sbjct: 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147
Query: 1490 KLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSID 1535
L+SL L M + + + DI + L+ L L +
Sbjct: 148 GLSSLEVL------KMAGNSFQE----NFLPDIFTELRNLTFLDLS 183
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 8e-13
Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 7/120 (5%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-T 1440
+ +L L + N P F + +L L+LS+ +++ L
Sbjct: 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194
Query: 1441 LVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI--GKLTSLRYL 1497
+L LQ+L + + F L L L+VLD I K+ +SL +L
Sbjct: 195 FNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 2e-15
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 6/119 (5%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIP-PSFFELMTSLKVLNLSKTRIKSLPET 1440
+N + L + L L+ N + + +L+ LNL I +
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKG- 186
Query: 1441 LVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTV 1499
V L+ L L L + PE S + + LR ++ ++ K + +L + +
Sbjct: 187 QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL 244
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 9e-15
Identities = 17/116 (14%), Positives = 47/116 (40%), Gaps = 6/116 (5%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP--ETL 1441
+N++ + ++L N ++ ++ + ++ L+L I ++ E
Sbjct: 108 NNNISRVSCS-RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165
Query: 1442 VNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL 1497
+ L+ L L+ F++ + +V L+ LDL ++ + E + ++
Sbjct: 166 ASSDTLEHLNLQYN-FIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWI 219
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 6e-12
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 11/116 (9%)
Query: 1384 DNDLQTLPGRP--SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETL 1441
D+ L+ S N+ L L N L I + T L++LNLS + + L
Sbjct: 19 DSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-L 76
Query: 1442 VNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL 1497
+L L+ L L + E+ +E L I + + +
Sbjct: 77 ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSR--GQGKKNI 125
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 4e-11
Identities = 26/181 (14%), Positives = 56/181 (30%), Gaps = 16/181 (8%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
N + + G+ L TL L N +L + P F + ++L ++ + + L
Sbjct: 178 YNFIYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSA-AGVTWISLRNNKLVLIEKALRF 235
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFG 1503
+ L+ LR F L + ++ + K+ + L
Sbjct: 236 SQNLEHFDLRGNGF---------HCGTLRDFFSKNQRVQTVAKQ--TVKKLTGQNEEECT 284
Query: 1504 SMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSL 1563
Y + + + RL AL+ + G + ++ E + +
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE---CERENQARQREI 341
Query: 1564 S 1564
Sbjct: 342 D 342
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 6e-10
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 8/102 (7%)
Query: 1397 PNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRDC 1455
+ + L+ S + ++K L+LS + + L L++L L
Sbjct: 10 NRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL 1497
++ SL L LDL + +E+ S+ L
Sbjct: 69 VLYET--LDLESLSTLRTLDLNNNYV----QELLVGPSIETL 104
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 2e-09
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 10/116 (8%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
N L S L TL L N ++ + S++ L+ + I + +
Sbjct: 67 SNVLYETLDLESLSTLRTLDLNNN-YVQELLV-----GPSIETLHAANNNISRVSCS--R 118
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE--IGKLTSLRYL 1497
+ + + L + + + G ++ LDL+ EI + +L +L
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 12/81 (14%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 1418 FELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDL 1476
+ K+ ++ + +K + ++ L L + ++ LE+L+L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 1477 RGTEIKMLPKEIGKLTSLRYL 1497
+ ++ L++LR L
Sbjct: 66 SSNVLYETL-DLESLSTLRTL 85
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 3e-04
Identities = 13/199 (6%), Positives = 37/199 (18%), Gaps = 34/199 (17%)
Query: 1324 SRAYSRLAELPNAGTSSLRSPERSRLFIPEAYQFLLGARAGLTEPPSEEEWTHAKMIFFM 1383
+ +L + + L ++
Sbjct: 269 KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKR-------KEHALLSGQ 321
Query: 1384 DNDLQTLP-GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP---- 1438
++ + L R + + + + R + + L K +
Sbjct: 322 GSETERLECERENQARQREIDALKE-QYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380
Query: 1439 ETLVNLKCLQILILRDCDFLFVL---------------------PPEVGSLECLEVLDLR 1477
L + + + + D+
Sbjct: 381 RAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMY 440
Query: 1478 GTEIKMLPKEIGKLTSLRY 1496
+ L +E +L L
Sbjct: 441 QHKETQLAEENARLKKLNG 459
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 7e-04
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 1436 SLPETLVNLKCLQILILRDCDFLFVLPPEVGS-LECLEVLDLRGTEIKML-PKEIGKLTS 1493
++ E N +I + D L + ++ LDL G + + ++ T
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59
Query: 1494 LRYL 1497
L L
Sbjct: 60 LELL 63
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 2e-15
Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 10/133 (7%)
Query: 1365 LTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSL 1424
L + P + + K+I +N L+ LP P P+L + N +L +P + + L
Sbjct: 143 LEKLPELQNSSFLKIIDVDNNSLKKLPDLP--PSLEFIAAGNN-QLEELPE--LQNLPFL 197
Query: 1425 KVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML 1484
+ +K LP+ ++L+ + + + + PE+ +L L + +K L
Sbjct: 198 TAIYADNNSLKKLPDLPLSLESI---VAGNN--ILEELPELQNLPFLTTIYADNNLLKTL 252
Query: 1485 PKEIGKLTSLRYL 1497
P L +L
Sbjct: 253 PDLPPSLEALNVR 265
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 1e-14
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
+ L +LP P+L +L N L +P L SL V N + + LP L
Sbjct: 80 NLGLSSLP--ELPPHLESLVASCN-SLTELPELPQSL-KSLLVDNNNLKALSDLPPLL-- 133
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSL 1494
+ L + + + PE+ + L+++D+ +K LP L +
Sbjct: 134 ----EYLGVSNNQLEKL--PELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 178
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 8e-14
Identities = 41/160 (25%), Positives = 62/160 (38%), Gaps = 24/160 (15%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
+N L+ LP + P L ++ N L+ +P SL+ + ++ LPE L N
Sbjct: 182 NNQLEELPELQNLPFLTAIYADNN-SLKKLPDL----PLSLESIVAGNNILEELPE-LQN 235
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFG 1503
L L + + L LP SLE L V D T+ LP+ LT L
Sbjct: 236 LPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNYLTD---LPELPQSLTFLDVS------ 285
Query: 1504 SMYKSEYIKLPPDLIS--------SDILSRLQALETLSID 1535
S +LPP+L + +LE L++
Sbjct: 286 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVS 325
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 4e-13
Identities = 34/144 (23%), Positives = 50/144 (34%), Gaps = 22/144 (15%)
Query: 1365 LTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSL 1424
L E P + I+ +N L+TLP P+L L ++ N L +P L T L
Sbjct: 227 LEELPELQNLPFLTTIYADNNLLKTLP--DLPPSLEALNVRDN-YLTDLPELPQSL-TFL 282
Query: 1425 KVLNLSKTRIKSLPETLVNLKC--------------LQILILRDCDFLFVLPPEVGSLEC 1470
V + + LP L L L+ L + + L LP
Sbjct: 283 DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPALPPR--- 338
Query: 1471 LEVLDLRGTEIKMLPKEIGKLTSL 1494
LE L + +P+ L L
Sbjct: 339 LERLIASFNHLAEVPELPQNLKQL 362
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 1e-12
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 14/112 (12%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
+N L P PNL L N +R + +L SL+ LN+S ++ LP
Sbjct: 286 ENIFSGLSELP--PNLYYLNASSN-EIRSLC----DLPPSLEELNVSNNKLIELPALPPR 338
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLR 1495
L+ LI L +P + L+ L + ++ P + LR
Sbjct: 339 ---LERLIASFNH-LAEVPELPQN---LKQLHVEYNPLREFPDIPESVEDLR 383
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-12
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 15/112 (13%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
+N L LP P L L N L +P EL +LK L++ ++ P+ +
Sbjct: 326 NNKLIELP--ALPPRLERLIASFN-HLAEVP----ELPQNLKQLHVEYNPLREFPDIPES 378
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLR 1495
++ L++ L +P +L+ L + ++ P + LR
Sbjct: 379 VEDLRM-----NSHLAEVPELPQNLK---QLHVETNPLREFPDIPESVEDLR 422
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-12
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 20/125 (16%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
+N L+ LP + P L T++ N L+ +P +L SL+ LN+ + LPE +
Sbjct: 224 NNILEELPELQNLPFLTTIYADNN-LLKTLP----DLPPSLEALNVRDNYLTDLPELPQS 278
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLEC--------------LEVLDLRGTEIKMLPKEIG 1489
L L + L LPP + L LE L++ ++ LP
Sbjct: 279 LTFLDVSENIFSG-LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP 337
Query: 1490 KLTSL 1494
+L L
Sbjct: 338 RLERL 342
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 9e-08
Identities = 26/160 (16%), Positives = 42/160 (26%), Gaps = 38/160 (23%)
Query: 1413 IPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSL---- 1468
I P T L+ + + +P N+K ++ PP G
Sbjct: 3 INPRNVSN-TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 1469 -----EC----LEVLDLRGTEIKMLPKEIGKLTSLR--------------YLTVFFFGSM 1505
+C L+L + LP+ L SL L +
Sbjct: 62 VSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNN 121
Query: 1506 YKSEYIKLPPDLISSDI----------LSRLQALETLSID 1535
LPP L + L L+ + +D
Sbjct: 122 NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVD 161
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 2e-15
Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 19/130 (14%)
Query: 1384 DNDLQTLPGRP---------SCPNLLTLFLQRNCRLRVIPPSF-FELMTSLKVLNLSKTR 1433
+N + ++P + L T+ L+ N +L + F + L +++S
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNC 764
Query: 1434 IKSLPETLVNLKCLQILILRDCDFLF------VLPPEVGSLECLEVLDLRGTEIKMLPKE 1487
S P +N L+ +R P + + L L + +I+ + ++
Sbjct: 765 FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK 824
Query: 1488 IGKLTSLRYL 1497
+ L L
Sbjct: 825 L--TPQLYIL 832
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 3e-14
Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 11/123 (8%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET--L 1441
N ++ L + L L L N ++ IP F ++ L S ++K +P
Sbjct: 582 HNKVRHLEAFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNA 640
Query: 1442 VNLKCLQILILRDCDFLFVLPPEVGS------LECLEVLDLRGTEIKMLPKEI-GKLTSL 1494
++ + + + + L EI+ P E+ + +
Sbjct: 641 KSVYVMGSVDFSYNKIG-SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699
Query: 1495 RYL 1497
+
Sbjct: 700 STI 702
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 3e-13
Identities = 26/193 (13%), Positives = 56/193 (29%), Gaps = 37/193 (19%)
Query: 1378 KMIFFMDNDLQTLP---GRPSCPNLLTLFLQRNCRLRVIPPSFFELM-----TSLKVLNL 1429
+ + F N L+ +P S + ++ N ++ + M + + L
Sbjct: 622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVTL 680
Query: 1430 SKTRIKSLP-ETLVNLKCLQILILRDCDF-------LFVLPPEVGSLECLEVLDLRGTEI 1481
S I+ P E + +IL + L + L +DLR ++
Sbjct: 681 SYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740
Query: 1482 KMLPKEI--GKLTSLRYLTV---------FFFGSMYKSEYIKLPPDLISS---------D 1521
L + L L + V + + + + +
Sbjct: 741 TSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800
Query: 1522 ILSRLQALETLSI 1534
++ +L L I
Sbjct: 801 GITTCPSLIQLQI 813
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 6e-13
Identities = 14/124 (11%), Positives = 35/124 (28%), Gaps = 16/124 (12%)
Query: 1385 NDLQTLPGR-PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
N + + L ++ + + + + + + N
Sbjct: 435 NRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYE----NEELSWSN 489
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRG----------TEIKMLPKEIGKLTS 1493
LK L + L +C + LP + L L+ L++ + L +
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549
Query: 1494 LRYL 1497
++
Sbjct: 550 IQIF 553
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 8e-09
Identities = 18/168 (10%), Positives = 50/168 (29%), Gaps = 18/168 (10%)
Query: 1384 DNDLQTLPGRPSCPNL--LTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETL 1441
+ L +++ F + L + +L + I PE +
Sbjct: 356 THSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE-M 414
Query: 1442 VNLKCLQILILRDCDF------LFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLR 1495
+K + L+D + + + L L+++ + + +
Sbjct: 415 KPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS 474
Query: 1496 YLTVFF------FGSMYKSEYIKLPPDLISSDI---LSRLQALETLSI 1534
+ + ++ ++L + + L L L++L+I
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 3e-07
Identities = 22/137 (16%), Positives = 40/137 (29%), Gaps = 36/137 (26%)
Query: 1394 PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-------------- 1439
+ + L L +P + +L T LKVL+
Sbjct: 320 DNNGRVTGLSLAGFGAKGRVPDAIGQL-TELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378
Query: 1440 ------------TLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTE------- 1480
L + L + L PE+ ++ + L+ T+
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNR 436
Query: 1481 IKMLPKEIGKLTSLRYL 1497
I + K I +LT L+ +
Sbjct: 437 ITFISKAIQRLTKLQII 453
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 5e-15
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 1384 DNDLQTLPGR---PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKS--LP 1438
++L+ + S NL+ L + RV F ++SL+VL ++ + LP
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 1439 ETLVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRY 1496
+ L+ L L L C L L P SL L+VL++ ++K +P I +LTSL+
Sbjct: 464 DIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522
Query: 1497 L 1497
+
Sbjct: 523 I 523
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 1e-13
Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 15/156 (9%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVI--PPSFFELMTSLKVLNLSKTRIKSLPETL 1441
N P+L L L RN L TSLK L+LS + ++
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392
Query: 1442 VNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYLTV 1499
+ L+ L+ L + + + V SL L LD+ T ++ I L+SL L
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL-- 450
Query: 1500 FFFGSMYKSEYIKLPPDLISSDILSRLQALETLSID 1535
M + + + DI + L+ L L +
Sbjct: 451 ----KMAGN-SFQ---ENFLPDIFTELRNLTFLDLS 478
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 2e-13
Identities = 74/437 (16%), Positives = 136/437 (31%), Gaps = 58/437 (13%)
Query: 1385 NDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETL 1441
N L+ L S P L L L R ++ I ++ ++ L L L+ I+SL
Sbjct: 38 NPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96
Query: 1442 VNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKML--PKEIGKLTSLRYLT 1498
L LQ L+ + L L G L+ L+ L++ I+ P+ LT+L +L
Sbjct: 97 SGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 1499 VFF----------FGSMYKSEYIKLPPDL-------ISSDILSRLQALETLSIDVHPGDK 1541
+ +++ + L DL I ++ L L++ +
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSL 214
Query: 1542 RWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSI 1601
K I ++GL + F + +F K + LT +F + + +
Sbjct: 215 NVMKT---CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY-LDYY 270
Query: 1602 VSWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFY--VDHHLSIVSLSDFGVG 1659
+ + D C N L V + V + L
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 330
Query: 1660 YMSGLKFCIISECLKIK--TVVD-------TKEHTTAVFPSLENLTLNHLWD--LTCIWQ 1708
+ K + + +D K + +L L + +
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390
Query: 1709 GILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCL--AVKSIILDGEIT 1766
L +L L L+ + S+ L L L + + + I +G
Sbjct: 391 NFL---GLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--- 443
Query: 1767 YSSCIMLPSLKKLRLHH 1783
L SL+ L++
Sbjct: 444 ------LSSLEVLKMAG 454
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-10
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 8/119 (6%)
Query: 1383 MDNDLQTLPGR-PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ET 1440
M+ + +P P + L L N LR + F L+VL+LS+ I+++
Sbjct: 15 MELNFYKIPDNLPF--STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71
Query: 1441 LVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYL 1497
+L L LIL + L L L+ L T + L IG L +L+ L
Sbjct: 72 YQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 3e-10
Identities = 83/464 (17%), Positives = 142/464 (30%), Gaps = 83/464 (17%)
Query: 1384 DNDLQTLPGRP--SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ET 1440
+ +L +L P L L + N P +F +T+L+ L+LS +I+S+
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Query: 1441 LVNLKCLQILILR---DCDFLFVLPPEVGSLECLEVLDLRGTEIK--MLPKEIGKLTSLR 1495
L L + +L L + + + P L L LR ++ I L L
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228
Query: 1496 --YLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITE 1553
L + F + E L L L + D D + +
Sbjct: 229 VHRLVLGEFRNEGNLEK-------FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL---- 277
Query: 1554 VSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYVQCDY 1613
+ LT +SS S IE V +F W + +L KF ++ +
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF---GQFPTLKLKSLKRLTFTS 334
Query: 1614 NQHDRCLRFVNGKNVPPEVI--------QILIHSTAFYVDHHLSIVSLSD-------FGV 1658
N+ V+ ++ E + S + + L + LS
Sbjct: 335 NKGGNAFSEVDLPSL--EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392
Query: 1659 GYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTL-----NHLWDLTCIWQGILPE 1713
+ L+ +K + + VF SL NL H
Sbjct: 393 LGLEQLEHLDFQHS-NLKQMSEFS-----VFLSLRNLIYLDISHTHTRV--------AFN 438
Query: 1714 GSFAE---LRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCL--AVKSIILDGEITYS 1768
G F L +L + + F + L L L + C + +
Sbjct: 439 GIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS----- 492
Query: 1769 SCIMLPSLKKLRLHH-----LPELANIWRNDWPSLEYISFYGCP 1807
L SL+ L + +P+ I+ SL+ I + P
Sbjct: 493 ----LSSLQVLNMASNQLKSVPD--GIFDR-LTSLQKIWLHTNP 529
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 3e-09
Identities = 64/429 (14%), Positives = 125/429 (29%), Gaps = 91/429 (21%)
Query: 1406 RNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILILRDCDFLFVLPPE 1464
IP + L S K L+LS ++ L + LQ+L L C+ + +
Sbjct: 15 MELNFYKIPDN---LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDG 70
Query: 1465 V-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDI 1522
SL L L L G I+ L L+SL+ L ++ L
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL------VAVETNLASLENF-----P 119
Query: 1523 LSRLQALETLSI------DVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEF 1576
+ L+ L+ L++ + S LT L L +I+ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPE------------YFSNLTNLEHLDLSSNKIQSIY-- 165
Query: 1577 LKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQIL 1636
Q+ + N + P +
Sbjct: 166 -CTDLRVLHQMPLLNL---------------SLDLSLNPM---------NFIQPGAFK-E 199
Query: 1637 IHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLT 1696
I + ++ +++ + ++GL+ + + + + ++ + L NLT
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG-EFRNEGNLEKFDKSALEGLCNLT 258
Query: 1697 LNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAV 1756
+ + F L +S + + + + + L
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERVKDFSYNFGWQHLE------- 310
Query: 1757 KSIILDGEITYSSCIMLPSLKKLRLHHLPELANIWRNDWPSLEYI--------------- 1801
+++ + + L SLK+L D PSLE++
Sbjct: 311 ---LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 1802 SFYGCPKLK 1810
S +G LK
Sbjct: 368 SDFGTTSLK 376
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-07
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 1394 PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILIL 1452
NL L L + +L + P+ F ++SL+VLN++ ++KS+P+ L LQ + L
Sbjct: 467 TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525
Query: 1453 R----DCD 1456
DC
Sbjct: 526 HTNPWDCS 533
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 20/135 (14%)
Query: 1383 MDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPP-SFFELMTSLKVLNLSKTRIKSLP--- 1438
+D L + +C ++ F + + + S+ L+++N + +L
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326
Query: 1439 --------------ETLVNLKCLQILILRDCD--FLFVLPPEVGSLECLEVLDLRGTEIK 1482
+ V+L L+ L L F L+ LDL +
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 1483 MLPKEIGKLTSLRYL 1497
+ L L +L
Sbjct: 387 TMSSNFLGLEQLEHL 401
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 5e-15
Identities = 18/158 (11%), Positives = 52/158 (32%), Gaps = 24/158 (15%)
Query: 1385 NDLQTLPGRPS-CPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE---- 1439
+T + +L + + L +P L ++++N++ R S +
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL-PEMQLINVACNRGISGEQLKDD 294
Query: 1440 -----TLVNLKCLQILILRDCDFL-FVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTS 1493
+ +QI+ + + F + + ++ L +L+ +++ G
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK 354
Query: 1494 LRYLTVFF--FGSMYKSEYIKLPPDLISSDILSRLQAL 1529
L L + + +P + +++ L
Sbjct: 355 LASLNLAYNQITE--------IPANFCGF--TEQVENL 382
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 2e-14
Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 16/127 (12%)
Query: 1384 DNDLQTLPGRPS---CPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET 1440
N L+ P+ L +L L N ++ IP +F ++ L+ + ++K +P
Sbjct: 339 YNQLEGKL--PAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNI 395
Query: 1441 LV--NLKCLQILILR-------DCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEI-GK 1490
++ + + D L P + ++L +I PKE+
Sbjct: 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455
Query: 1491 LTSLRYL 1497
+ L +
Sbjct: 456 GSPLSSI 462
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 4e-14
Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 19/130 (14%)
Query: 1384 DNDLQTLPGRP---------SCPNLLTLFLQRNCRLRVIPPSFFEL-MTSLKVLNLSKTR 1433
N L +P + L ++ L+ N +L + F + L ++LS
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNS 524
Query: 1434 IKSLPETLVNLKCLQILILRDCD------FLFVLPPEVGSLECLEVLDLRGTEIKMLPKE 1487
P +N L+ +R+ L P + L L + +I+ + ++
Sbjct: 525 FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK 584
Query: 1488 IGKLTSLRYL 1497
I ++ L
Sbjct: 585 I--TPNISVL 592
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 2e-12
Identities = 20/156 (12%), Positives = 46/156 (29%), Gaps = 23/156 (14%)
Query: 1382 FMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETL 1441
+ + P R +L+ + + + + I S + + I + + +
Sbjct: 145 YQKTFVDYDP-REDFSDLIKDCINSDPQQKSIKKSSR-ITLKDTQIGQLSNNITFVSKAV 202
Query: 1442 VNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVF- 1500
+ L L+ + + F+ E E E T + L L + V+
Sbjct: 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT----EDLKWDNLKDLTDVEVYN 258
Query: 1501 --FFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534
LP L L ++ +++
Sbjct: 259 CPNLTK--------LPTF------LKALPEMQLINV 280
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 1e-11
Identities = 16/150 (10%), Positives = 44/150 (29%), Gaps = 38/150 (25%)
Query: 1384 DNDLQTLPGRPSCP-------NLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRI-- 1434
+ + + P + S + N + + + L T L+ + +
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSN-NITFVSKAVMRL-TKLRQFYMGNSPFVA 220
Query: 1435 ------------------KSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDL 1476
K+ NLK L + + +C L LP + +L ++++++
Sbjct: 221 ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280
Query: 1477 RGTEIKMLPK---------EIGKLTSLRYL 1497
+ + ++ +
Sbjct: 281 ACNRGISGEQLKDDWQALADAPVGEKIQII 310
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-09
Identities = 22/179 (12%), Positives = 48/179 (26%), Gaps = 40/179 (22%)
Query: 1395 SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIK-----SLPETLVNLKCLQI 1449
S + L L+ +P + +L T L+VL L K P+ + +
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQL-TELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137
Query: 1450 LILRDCDFLFVLPPEVGSLECLEV--------------------------LDLRGTEIKM 1483
+ + ++ + I
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197
Query: 1484 LPKEIGKLTSLRYL-------TVFFFGSMYKSEYIKLPPDLISSDI-LSRLQALETLSI 1534
+ K + +LT LR +++E + + D+ L+ L + +
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 7e-04
Identities = 21/95 (22%), Positives = 29/95 (30%), Gaps = 11/95 (11%)
Query: 1440 TLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDL-----RGTEIKMLPKEIGKLTSL 1494
+L + + L L +P +G L LEVL L + E PK I S
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 1495 RYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQAL 1529
+ Y K D + S L
Sbjct: 136 EQK------QKMRMHYQKTFVDYDPREDFSDLIKD 164
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 6e-15
Identities = 43/212 (20%), Positives = 80/212 (37%), Gaps = 26/212 (12%)
Query: 1365 LTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSL 1424
+T+ ++EE + + ++ G NL L L N ++ I P + L
Sbjct: 34 VTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGN-QITDISP--LSNLVKL 90
Query: 1425 KVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML 1484
L + +I + L NL L+ L L + + + + P + +L + L+L
Sbjct: 91 TNLYIGTNKITDISA-LQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSD 147
Query: 1485 PKEIGKLTSLRYLTVFF--------FGSMYKSEYIKLPPDLISSDI-LSRLQALETLSID 1535
+ +T L YLTV ++ + L + I L+ L +L +
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAY 207
Query: 1536 VHPGDKRWDKDVKIV-ITEVSGLTKLSSLSFH 1566
+I IT V+ +T+L+SL
Sbjct: 208 ----------VNQITDITPVANMTRLNSLKIG 229
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 9e-13
Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 5/114 (4%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
+N + L + L L + N ++ I + +T LK+LN+ +I + L N
Sbjct: 230 NNKITDLSPLANLSQLTWLEIGTN-QISDINA--VKDLTKLKMLNVGSNQISDISV-LNN 285
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL 1497
L L L L + +G L L L L I + + L+ +
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR-PLASLSKMDSA 338
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 2e-12
Identities = 39/216 (18%), Positives = 78/216 (36%), Gaps = 35/216 (16%)
Query: 1375 THAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRI 1434
++ N + + + NL L+L + + I P +T + LNL
Sbjct: 88 VKLTNLYIGTNKITDISALQNLTNLRELYLNED-NISDISP--LANLTKMYSLNLGANHN 144
Query: 1435 KSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSL 1494
S L N+ L L + + V + +L L L L +I+ + + LTSL
Sbjct: 145 LSDLSPLSNMTGLNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQIEDIS-PLASLTSL 201
Query: 1495 RYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIV-ITE 1553
Y + Y ++ + P ++ + L +L I + KI ++
Sbjct: 202 HYF------TAYVNQITDITP-------VANMTRLNSLKIG----------NNKITDLSP 238
Query: 1554 VSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTE 1589
++ L++L+ L +I + + +L
Sbjct: 239 LANLSQLTWLEIGTNQISDINAV-----KDLTKLKM 269
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 2e-12
Identities = 35/208 (16%), Positives = 85/208 (40%), Gaps = 27/208 (12%)
Query: 1365 LTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSL 1424
+T+ + + T+ + ++ ++++ + + + +L L N L + P MT L
Sbjct: 100 ITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGL 157
Query: 1425 KVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML 1484
L ++++++K + + NL L L L + + SL L +I +
Sbjct: 158 NYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITDI 214
Query: 1485 PKEIGKLTSLRYLTVF--------FFGSMYKSEYIKLPPDLISS-DILSRLQALETLSID 1535
+ +T L L + ++ + ++++ + IS + + L L+ L++
Sbjct: 215 T-PVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVG 273
Query: 1536 VHPGDKRWDKDVKIVITEVSGLTKLSSL 1563
++ I+++S L LS L
Sbjct: 274 ---SNQ---------ISDISVLNNLSQL 289
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 9e-12
Identities = 39/217 (17%), Positives = 83/217 (38%), Gaps = 33/217 (15%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
+ + + LQ+ + + E + S+ L ++ ++ S+ +
Sbjct: 9 PAPINQIFPDADLAEGIRAVLQKA-SVTDVVT--QEELESITKLVVAGEKVASIQG-IEY 64
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL------ 1497
L L+ L L + + P + +L L L + +I + + LT+LR L
Sbjct: 65 LTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN 121
Query: 1498 --TVFFFGSMYKSEYIKLPPDLISSDI--LSRLQALETLSIDVHPGDKRWDKDVKI-VIT 1552
+ ++ K + L + SD+ LS + L L++ + K+ +T
Sbjct: 122 ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVT----------ESKVKDVT 171
Query: 1553 EVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTE 1589
++ LT L SLS ++ +IE ++ + L
Sbjct: 172 PIANLTDLYSLSLNYNQIEDISPL-----ASLTSLHY 203
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTS 1423
+++ + ++ T KM+ N + + + L +LFL N +L +T+
Sbjct: 254 QISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTN 312
Query: 1424 LKVLNLSKTRIKSLPETLVNLKCLQILILRD 1454
L L LS+ I + L +L + +
Sbjct: 313 LTTLFLSQNHITDIRP-LASLSKMDSADFAN 342
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 2e-14
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 14/116 (12%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
DN L +LP L L+ N RL +P L + LK L +S R+ SLP
Sbjct: 190 DNQLASLP--TLPSELYKLWAYNN-RLTSLP----ALPSGLKELIVSGNRLTSLPVLPSE 242
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTV 1499
L+ L++ L LP L L + ++ LP+ + L+S + +
Sbjct: 243 ---LKELMVSGN-RLTSLPMLPSG---LLSLSVYRNQLTRLPESLIHLSSETTVNL 291
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 3e-12
Identities = 34/128 (26%), Positives = 47/128 (36%), Gaps = 28/128 (21%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
DN L +LP PS L L+ N +L +P + L+ L++S ++ SLP
Sbjct: 150 DNQLASLPALPS--ELCKLWAYNN-QLTSLPMLP----SGLQELSVSDNQLASLPTLPSE 202
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEV-----------------LDLRGTEIKMLPK 1486
L L R L LP L+ L V L + G + LP
Sbjct: 203 LYKLWAYNNR----LTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM 258
Query: 1487 EIGKLTSL 1494
L SL
Sbjct: 259 LPSGLLSL 266
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 4e-12
Identities = 27/128 (21%), Positives = 42/128 (32%), Gaps = 25/128 (19%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
++ L TLP ++ TL + N L +P L+ L +S ++ SLP
Sbjct: 49 ESGLTTLPDC-LPAHITTLVIPDN-NLTSLPALP----PELRTLEVSGNQLTSLPVLPPG 102
Query: 1444 LKCLQILILRDCDF----------------LFVLPPEVGSLECLEVLDLRGTEIKMLPKE 1487
L L I L LP L+ L + ++ LP
Sbjct: 103 LLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQE---LSVSDNQLASLPAL 159
Query: 1488 IGKLTSLR 1495
+L L
Sbjct: 160 PSELCKLW 167
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 1e-11
Identities = 36/167 (21%), Positives = 55/167 (32%), Gaps = 41/167 (24%)
Query: 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFF----- 1418
GLT P + H + DN+L +LP P P L TL + N +L +P
Sbjct: 51 GLTTLP-DCLPAHITTLVIPDNNLTSLPALP--PELRTLEVSGN-QLTSLPVLPPGLLEL 106
Query: 1419 -----------ELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGS 1467
L + L L + ++ SLP L+ L + + L LP
Sbjct: 107 SIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ----LASLPALPSE 162
Query: 1468 LE-----------------CLEVLDLRGTEIKMLPKEIGKLTSLRYL 1497
L L+ L + ++ LP +L L
Sbjct: 163 LCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAY 209
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 1e-09
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 1405 QRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPE 1464
+ R V+ L VLN+ ++ + +LP+ L + L++ D + L LP
Sbjct: 23 ESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNN-LTSLPAL 79
Query: 1465 VGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL 1497
L L++ G ++ LP L L
Sbjct: 80 PPELR---TLEVSGNQLTSLPVLPPGLLELSIF 109
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 8e-08
Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 7/116 (6%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
N L +LP L L + N RL +P L + L L++ + ++ LPE+L++
Sbjct: 230 GNRLTSLP--VLPSELKELMVSGN-RLTSLP----MLPSGLLSLSVYRNQLTRLPESLIH 282
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTV 1499
L + L + + M + T +L
Sbjct: 283 LSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAA 338
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 77.3 bits (190), Expect = 2e-14
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 15/120 (12%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
+N L LP L + N +L ++P EL TSL+VL++ ++ LPE +
Sbjct: 129 NNQLTMLP--ELPALLEYINADNN-QLTMLP----ELPTSLEVLSVRNNQLTFLPELPES 181
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLE----VLDLRGTEIKMLPKEIGKLTSLRYLTV 1499
L + L + L LP E R I +P+ I L + +
Sbjct: 182 L---EALDVSTN-LLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIIL 237
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 77.3 bits (190), Expect = 2e-14
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
DN L TLP +L L + N +L ++P EL L+ +N ++ LPE +
Sbjct: 109 DNRLSTLP--ELPASLKHLDVDNN-QLTMLP----ELPALLEYINADNNQLTMLPELPTS 161
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFF 1501
L++L +R+ L LP S LE LD+ ++ LP + +FF
Sbjct: 162 ---LEVLSVRNNQ-LTFLPELPES---LEALDVSTNLLESLPAVPVRNHHSEETEIFF 212
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 74.2 bits (182), Expect = 2e-13
Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 21/169 (12%)
Query: 1327 YSRLAELPNAGTSSLRSPERSRLFIPEAYQFLLGARAGLTEPPSEEEWTHAKMIFFMDND 1386
Y+ ++ S+ E+ L R E + +
Sbjct: 19 YNTISGTYADYFSAWDKWEKQAL--------PGENRNEAVSLLKECLINQFSELQLNRLN 70
Query: 1387 LQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKC 1446
L +LP P + L + +N L +P SL+ L+ R+ +LPE +LK
Sbjct: 71 LSSLP-DNLPPQITVLEITQN-ALISLPELP----ASLEYLDACDNRLSTLPELPASLKH 124
Query: 1447 LQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLR 1495
L + + L +LP LE ++ ++ MLP+ L L
Sbjct: 125 LDVDNNQ----LTMLPELPAL---LEYINADNNQLTMLPELPTSLEVLS 166
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 1e-12
Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 13/119 (10%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
+N L LP +L L ++ N +L +P EL SL+ L++S ++SLP V
Sbjct: 149 NNQLTMLP--ELPTSLEVLSVRNN-QLTFLP----ELPESLEALDVSTNLLESLPAVPVR 201
Query: 1444 LKCLQ----ILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLP-KEIGKLTSLRYL 1497
+ R+ + +P + SL+ + L + + + + T+
Sbjct: 202 NHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDY 259
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 5e-04
Identities = 19/161 (11%), Positives = 43/161 (26%), Gaps = 13/161 (8%)
Query: 1384 DNDLQTLPGRP-SCPNLLTLFLQ---RNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE 1439
N L++LP P + + R R+ IP + L + L + S
Sbjct: 189 TNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSL-DPTCTIILEDNPLSSRIR 247
Query: 1440 TLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLD----LRGTEIKMLPKEIGKLTSLR 1495
++ + Q + + + +L + + +
Sbjct: 248 ESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEE 307
Query: 1496 YLTVFF--FGSMYKSEYIKLPPDLIS--SDILSRLQALETL 1532
+ F + + + + L +L A L
Sbjct: 308 HANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAEL 348
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 3e-14
Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 4/118 (3%)
Query: 1384 DNDLQTLPGR-PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETL 1441
N + L L Q + RV S F + L L++S T K
Sbjct: 385 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444
Query: 1442 VNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYL 1497
+ L L L + F V + L LDL +++ + + L L+ L
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 7e-14
Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 6/119 (5%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-T 1440
+ + +L TL + N + F T+L L+LSK +++ +
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492
Query: 1441 LVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEIGK-LTSLRYL 1497
L LQ+L + L L L L LD I+ + SL +
Sbjct: 493 FDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFF 550
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 8e-13
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 8/119 (6%)
Query: 1385 NDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETL 1441
N L+ L + L L L R + I + + L L L+ I+S P +
Sbjct: 42 NPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100
Query: 1442 VNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRG---TEIKMLPKEIGKLTSLRYL 1497
L L+ L+ + + +G L L+ L++ K LP LT+L ++
Sbjct: 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK-LPAYFSNLTNLVHV 158
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 2e-12
Identities = 36/156 (23%), Positives = 55/156 (35%), Gaps = 15/156 (9%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELM--TSLKVLNLSKTRIKSLPETL 1441
N + + P+L L L RN L + + SL+ L+LS +
Sbjct: 337 MNKGSISFKKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF 395
Query: 1442 VNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYLTV 1499
+ L+ LQ L + V SLE L LD+ T K+ I LTSL L
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL-- 453
Query: 1500 FFFGSMYKSEYIKLPPDLISSDILSRLQALETLSID 1535
M + + S++ + L L +
Sbjct: 454 ----KMAGNSFKDNTL----SNVFANTTNLTFLDLS 481
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 8e-12
Identities = 59/469 (12%), Positives = 121/469 (25%), Gaps = 120/469 (25%)
Query: 1384 DNDLQTLPGRP--SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKS--LPE 1439
N +Q+ +L L +L + + +LK LN++ I S LP
Sbjct: 89 GNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147
Query: 1440 TLVNLKCLQILILRDCDFLFVLPPEV-----GSLECLEVLDLRGTEIKMLPKEIGKLTSL 1494
NL L + L ++ + + + LD+ I + + + L
Sbjct: 148 YFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKL 206
Query: 1495 RYL-----------TVFFFGSMYKSEYIKLPPDLISS---------DILSRLQALETLSI 1534
L ++ +L I+ L +
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266
Query: 1535 DVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVV 1594
+ + I + L +S++S I+ + + K W + + +
Sbjct: 267 RLTYTNDFS-----DDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-- 319
Query: 1595 GHDVKSIVSWVTDYVQC---DYNQHDRCLRFVNGKNVPPEVIQIL---------IHSTAF 1642
K + +++ N+ + V ++ L ++
Sbjct: 320 ----KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSL-----SYLDLSRNALSFSGCCSY 370
Query: 1643 YVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTL--NHL 1700
L SL +S I+S L++L + L
Sbjct: 371 ---SDLGTNSLRHL---DLSFNGAIIMSANFMG-------------LEELQHLDFQHSTL 411
Query: 1701 WDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSII 1760
+ + +F L KL L + Y
Sbjct: 412 -------KRVTEFSAFLSLE-----------------------KLLYLDISYTN------ 435
Query: 1761 LDGEITYSSCIMLPSLKKLRLHHLPELANIWRNDW---PSLEYISFYGC 1806
+ L SL L++ N N + +L ++ C
Sbjct: 436 TKI-DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 9e-11
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 1383 MDNDLQTLPGR-PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PET 1440
MD L +P P + + L N L+++ F + L+ L+LS+ I+++ +
Sbjct: 19 MDQKLSKVPDDIP--SSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEIETIEDKA 75
Query: 1441 LVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYL 1497
L L LIL P L LE L T++ L IG+L +L+ L
Sbjct: 76 WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-09
Identities = 69/427 (16%), Positives = 125/427 (29%), Gaps = 105/427 (24%)
Query: 1394 PSCPN-------LLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLK 1445
P N +T +L +P +S K ++LS +K L + N
Sbjct: 1 PGSLNPCIEVVPNITYQCMDQ-KLSKVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFS 56
Query: 1446 CLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGS 1504
LQ L L C+ + L L L L G I+ LTSL L
Sbjct: 57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL------- 109
Query: 1505 MYKSEYIKLPPDL-------ISSDILSRLQALETLSI------DVHPGDKRWDKDVKIVI 1551
+ S + +L L+ L++
Sbjct: 110 -----------VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA----------- 147
Query: 1552 TEVSGLTKLSSLSFHFPEIECVAE----FLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTD 1607
S LT L + + I+ + FL+ + N L
Sbjct: 148 -YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL-------------------- 186
Query: 1608 YVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFC 1667
N + + + Q I + + + ++ + ++GL
Sbjct: 187 --DMSLNP----I-----DFIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234
Query: 1668 IISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFA---ELRILSI 1724
+ + K + + ++ L ++T++ LT F + +S+
Sbjct: 235 RLIL-GEFKDERNLEIFEPSIMEGLCDVTIDEF-RLTYTNDFSDDIVKFHCLANVSAMSL 292
Query: 1725 HACR--HLEYVFTCSMIQFL----AKLEELTVEYCLAVKSIILDG-EITYSSCIM-LPSL 1776
+LE V Q L +L++ +KS+ L + + S + LPSL
Sbjct: 293 AGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSL 352
Query: 1777 KKLRLHH 1783
L L
Sbjct: 353 SYLDLSR 359
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE 1439
N+L L +L TL N R+ SL NL+ + + E
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSVACICE 562
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 3e-14
Identities = 39/157 (24%), Positives = 58/157 (36%), Gaps = 17/157 (10%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-T 1440
N L + L L L N +LR + P+ F + L L+L + ++ L
Sbjct: 65 SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124
Query: 1441 LVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYLT 1498
L LQ L L+D L LP + L L L L G I +P+ L SL L
Sbjct: 125 FRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL- 182
Query: 1499 VFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSID 1535
++++ + P L L TL +
Sbjct: 183 -----LLHQNRVAHVHP-----HAFRDLGRLMTLYLF 209
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 2e-12
Identities = 33/162 (20%), Positives = 51/162 (31%), Gaps = 30/162 (18%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLV 1442
LQ +P +FL N R+ +P + F +L +L L + +
Sbjct: 20 QQGLQAVPVGIP-AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77
Query: 1443 NLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYLTVF 1500
L L+ L L D L + P L L L L ++ L + L +L+YL
Sbjct: 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL--- 134
Query: 1501 FFGSMYKSEYIKLPPDL-------ISSDILSRLQALETLSID 1535
L + D L L L +
Sbjct: 135 ---------------YLQDNALQALPDDTFRDLGNLTHLFLH 161
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 3e-12
Identities = 35/120 (29%), Positives = 47/120 (39%), Gaps = 7/120 (5%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-T 1440
LQ L L L+LQ N L+ +P F + +L L L RI S+PE
Sbjct: 114 RCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172
Query: 1441 LVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYLT 1498
L L L+L + + P L L L L + LP E L +L+YL
Sbjct: 173 FRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 4e-08
Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 16/119 (13%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-T 1440
N + ++P R +L L L +N R+ + P F + L L L + +LP
Sbjct: 162 GNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220
Query: 1441 LVNLKCLQILILR----DCD--------FLFVLPPEVGSLECLEVLDLRGTEIKMLPKE 1487
L L+ LQ L L CD +L + C L G ++K L
Sbjct: 221 LAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAAN 279
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 3e-14
Identities = 46/235 (19%), Positives = 94/235 (40%), Gaps = 31/235 (13%)
Query: 1365 LTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSL 1424
+T+ S+ + + ++++ G NL + N +L I P + +T L
Sbjct: 36 VTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN-QLTDITP--LKNLTKL 92
Query: 1425 KVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML 1484
+ ++ +I + L NL L L L + + + P + +L L L+L I +
Sbjct: 93 VDILMNNNQIADITP-LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTISDI 149
Query: 1485 PKEIGKLTSLRYL-------TVFFFGSMYKSEYIKLPPDLISS-DILSRLQALETLSIDV 1536
+ LTSL+ L + ++ E + + + +S +L++L LE+L
Sbjct: 150 S-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT- 207
Query: 1537 HPGDKRWDKDVKI-VITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEF 1590
+ +I IT + LT L LS + +++ + + LT+
Sbjct: 208 ---------NNQISDITPLGILTNLDELSLNGNQLKDIGTL-----ASLTNLTDL 248
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 3e-13
Identities = 47/231 (20%), Positives = 88/231 (38%), Gaps = 32/231 (13%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
N + + NL +L N ++ I P ++T+L L+L+ ++K + TL +
Sbjct: 186 SNKVSDISVLAKLTNLESLIATNN-QISDITP--LGILTNLDELSLNGNQLKDIG-TLAS 241
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVF--- 1500
L L L L + + L P + L L L L +I + + LT+L L +
Sbjct: 242 LTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQ 298
Query: 1501 -----FFGSMYKSEYIKLPPDLISSDI-LSRLQALETLSIDVHPGDKRWDKDVKI-VITE 1553
++ Y+ L + IS +S L L+ L + K+ ++
Sbjct: 299 LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY----------NNKVSDVSS 348
Query: 1554 VSGLTKLSSLSFHFPEIECVAEFLKGSAW-----NNQQLTEFKFVVGHDVK 1599
++ LT ++ LS +I + + N+Q T +V
Sbjct: 349 LANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVS 399
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 9e-13
Identities = 31/208 (14%), Positives = 72/208 (34%), Gaps = 21/208 (10%)
Query: 1365 LTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSL 1424
L + + T+ + +N + L L L L N ++ I P +T+L
Sbjct: 233 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN-QISNISP--LAGLTAL 289
Query: 1425 KVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML 1484
L L++ +++ + + NLK L L L + + V SL L+ L ++ +
Sbjct: 290 TNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFYNNKVSDV 346
Query: 1485 PKEIGKLTSLRYL--------TVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDV 1536
+ LT++ +L + ++ + + L ++ ++ + +
Sbjct: 347 S-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV- 404
Query: 1537 HPGDKRWDKDVKIVITEVSGLTKLSSLS 1564
+ I +S +
Sbjct: 405 -----KNVTGALIAPATISDGGSYTEPD 427
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-11
Identities = 32/184 (17%), Positives = 63/184 (34%), Gaps = 31/184 (16%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
D + + + + L + + + + L + IKS+ +
Sbjct: 11 DTPINQIFTDTALAEKMKTVLGKT-NVTDTVS--QTDLDQVTTLQADRLGIKSIDG-VEY 66
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFG 1503
L L + + L + P + +L L + + +I + + LT+L L
Sbjct: 67 LNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGL------ 117
Query: 1504 SMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKI-VITEVSGLTKLSS 1562
+++ ++ + P L L L L + I I+ +SGLT L
Sbjct: 118 TLFNNQITDIDP-------LKNLTNLNRLELS----------SNTISDISALSGLTSLQQ 160
Query: 1563 LSFH 1566
LSF
Sbjct: 161 LSFG 164
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 5e-11
Identities = 40/209 (19%), Positives = 71/209 (33%), Gaps = 29/209 (13%)
Query: 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTS 1423
G+ E + I F +N L + + L+ + + N ++ I P +T+
Sbjct: 57 GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN-QIADITP--LANLTN 113
Query: 1424 LKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKM 1483
L L L +I + L NL L L L + L L+ L +
Sbjct: 114 LTGLTLFNNQITDID-PLKNLTNLNRLELSSNT--ISDISALSGLTSLQQLSFGNQVTDL 170
Query: 1484 LPKEIGKLTSLRYLTVFF--------FGSMYKSEYIKLPPDLISS-DILSRLQALETLSI 1534
P + LT+L L + + E + + IS L L L+ LS+
Sbjct: 171 KP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 228
Query: 1535 DVHPGDKRWDKDVKIVITEVSGLTKLSSL 1563
+ + ++ L L++L
Sbjct: 229 N------------GNQLKDIGTLASLTNL 245
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 7e-09
Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 5/135 (3%)
Query: 1365 LTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSL 1424
L + + + N++ + S L LF N ++ + +T++
Sbjct: 299 LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN-KVSDVSS--LANLTNI 355
Query: 1425 KVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML 1484
L+ +I L L NL + L L D P + + T +
Sbjct: 356 NWLSAGHNQISDLTP-LANLTRITQLGLNDQA-WTNAPVNYKANVSIPNTVKNVTGALIA 413
Query: 1485 PKEIGKLTSLRYLTV 1499
P I S +
Sbjct: 414 PATISDGGSYTEPDI 428
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 7e-14
Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 22/174 (12%)
Query: 1382 FMDNDLQTLPGRP----SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL 1437
F D D + + ++ ++ LQ++ I + F + L+ L+L+ T + L
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISSNTFHCFSGLQELDLTATHLSEL 293
Query: 1438 PETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML--PKEIGKLTSLR 1495
P LV L L+ L+L F + + L L ++G ++ + L +LR
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353
Query: 1496 YL------------TVFFFGSMYKSEYIKL---PPDLISSDILSRLQALETLSI 1534
L ++ + + L P + ++ LE L +
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 1e-13
Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 5/119 (4%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-T 1440
+ + S L TL L N L + + +LK L +T I S+
Sbjct: 66 RCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTGISSIDFIP 124
Query: 1441 LVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLT 1498
L N K L+ L L + P+ E L+VLD + I L KE + L L+
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 2e-13
Identities = 69/461 (14%), Positives = 144/461 (31%), Gaps = 88/461 (19%)
Query: 1383 MDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETL 1441
+ L +PG + L N L I + F + +L L+L++ +I + +T
Sbjct: 20 ENLGLNEIPGTLP-NSTECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTF 77
Query: 1442 VNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVF 1500
+ L L+L +F+ + + L+ L T I + + +L L
Sbjct: 78 QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL--- 134
Query: 1501 FFGSMYKSEYIKLPPDL-------ISSDILSRLQALETLSI------DVHPGDKRWDKDV 1547
L I + L+ L + D
Sbjct: 135 ---------------YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED------- 172
Query: 1548 KIVITEVSGLTKLSSLSFHFP--EIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWV 1605
+S L + ++LS + +I + A+++ F ++++
Sbjct: 173 ------MSSLQQATNLSLNLNGNDIAGIEP----GAFDSAVFQSLNF---GGTQNLLVIF 219
Query: 1606 TDYVQCDYNQ-HDRCLRFVNGKNVPPEVIQILIHSTAFYVD-HHLSIVSLSDFGVGYMSG 1663
++ +++ P V + L + ++ ++S SG
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG 279
Query: 1664 LKFCIISECLKIKTVVDTKEHTTAVFPSLENLTL--NHLWDLTCIWQGILPEGSFAE--- 1718
L+ ++ + + +L+ L L N + L + S +
Sbjct: 280 LQELDLTAT-HLSEL----PSGLVGLSTLKKLVLSANKFEN--------LCQISASNFPS 326
Query: 1719 LRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKK 1778
L LSI + T ++ L L EL + + S + ++ L L+
Sbjct: 327 LTHLSIKGNTKRLELGTGC-LENLENLRELDLSHDDIETSDCCNLQLRN-----LSHLQS 380
Query: 1779 LRLHHLPELANIWRNDW---PSLEYISFYGCPKLKKMGMDS 1816
L L + E ++ + P LE + +LK S
Sbjct: 381 LNLSYN-EPLSLKTEAFKECPQLELLDLAFT-RLKVKDAQS 419
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 2e-12
Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 36/169 (21%)
Query: 1384 DNDLQTLPGRP----SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE 1439
+D++T + +L +L L N + F+ L++L+L+ TR+K
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417
Query: 1440 --TLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE----IGKLTS 1493
NL L++L L L L+ L+L+G + + L
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477
Query: 1494 LRYLTVFFFGSMYKSEYIKLPPDL-------ISSDILSRLQALETLSID 1535
L L L I + L+ + + +
Sbjct: 478 LEIL------------------VLSFCDLSSIDQHAFTSLKMMNHVDLS 508
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 9e-12
Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 9/120 (7%)
Query: 1384 DNDLQTLPGRP---SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL--- 1437
L+ + + L L L + L + F+ + +L+ LNL
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467
Query: 1438 -PETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEI-GKLTSLR 1495
+L L L+IL+L CD + SL+ + +DL + E L +
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY 527
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 7e-08
Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 8/101 (7%)
Query: 1384 DNDLQTLPGRPS-----CPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL- 1437
N + + L L L C L I F + + ++LS R+ S
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLS-FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516
Query: 1438 PETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRG 1478
E L +LK + L L +LP + L ++LR
Sbjct: 517 IEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQ 556
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 8e-14
Identities = 40/201 (19%), Positives = 72/201 (35%), Gaps = 33/201 (16%)
Query: 1384 DNDLQTLPGRP--SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-T 1440
DNDL + R +L L L++ L IP + L VL L I ++ + +
Sbjct: 137 DNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195
Query: 1441 LVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTV 1499
L L++L + +L + P L L + + +P + L LR+L
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL-- 253
Query: 1500 FFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEV----- 1554
++ + I I +L L L+ + + G + + V
Sbjct: 254 ----NLSYNP-IS----TIEGSMLHELLRLQEIQLV---GGQ---------LAVVEPYAF 292
Query: 1555 SGLTKLSSLSFHFPEIECVAE 1575
GL L L+ ++ + E
Sbjct: 293 RGLNYLRVLNVSGNQLTTLEE 313
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 4e-13
Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 21/192 (10%)
Query: 1362 RAGLTEPPSEEEWTHAKMIFFMDNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFE 1419
R P T +++ N ++TL S P+L L L N + + P F
Sbjct: 20 RKRFVAVPEGIP-TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFN 77
Query: 1420 LMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLR 1477
+ +L+ L L R+K +P L L L + + + +L + L L+ L++
Sbjct: 78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVG 136
Query: 1478 GTEIKMLPKEI-GKLTSLRYLTVFF----------FGSMYKSEYIKL---PPDLISSDIL 1523
++ + L SL LT+ ++ ++L + I
Sbjct: 137 DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196
Query: 1524 SRLQALETLSID 1535
RL L+ L I
Sbjct: 197 KRLYRLKVLEIS 208
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 4e-10
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Query: 1385 NDLQTL-PGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLV 1442
L T+ P NL +L + L +P + L+ LNLS I ++ L
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269
Query: 1443 NLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYL 1497
L LQ + L L V+ P L L VL++ G ++ L + + + +L L
Sbjct: 270 ELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325
|
| >3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 1e-13
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 5/111 (4%)
Query: 14 KMYDVFLSFRGEDTRDNFTSHLYSAL--CQNNVETFIDN-DLKRGDEIPESLLGTIEAST 70
K YDV + ED L S L ++ F+ D G I L + +S
Sbjct: 9 KDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSH 66
Query: 71 ISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQIG 121
+++ + + WC ++L+ L IP+ + + ++
Sbjct: 67 CRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELR 117
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 1e-13
Identities = 39/196 (19%), Positives = 60/196 (30%), Gaps = 36/196 (18%)
Query: 1384 DNDLQTLPGRP--SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PET 1440
N + L P L L LQ N L + F T+L L+L I+ +
Sbjct: 58 FNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 116
Query: 1441 LVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE---IGKLTSLRYL 1497
V K L L L LE L+ L L +I+ L E I +SL+ L
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176
Query: 1498 TVFFFGSMYKSEYIKLPPDL-------ISSDILSRLQALETLSIDVHPGDKRWDKDVKIV 1550
+L S + L L ++ + + +
Sbjct: 177 ------------------ELSSNQIKEFSPGCFHAIGRLFGLFLN----NVQLGPSLTEK 214
Query: 1551 ITEVSGLTKLSSLSFH 1566
+ T + +LS
Sbjct: 215 LCLELANTSIRNLSLS 230
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 3e-13
Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 10/160 (6%)
Query: 1384 DNDLQTLPGRP--SCPNLLTLFLQRNCRLRVIPPSFFEL--MTSLKVLNLSKTRIKSLPE 1439
N ++ + L LFL + TS++ L+LS +++ +
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239
Query: 1440 -TLVNLKC--LQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLR 1495
T + LK L +L L + V L LE L I+ L + L ++R
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299
Query: 1496 YLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSID 1535
YL + + LP I L+ LE L+++
Sbjct: 300 YLNLKRSFTKQSISLASLPK--IDDFSFQWLKCLEHLNME 337
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 7e-13
Identities = 29/154 (18%), Positives = 52/154 (33%), Gaps = 10/154 (6%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PET 1440
N + + +L L L N + + + + ++ + LS + L +
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449
Query: 1441 LVNLKCLQILILRDCDF--LFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYL 1497
+ LQ L+LR + P L L +LDL I + + + L L L
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509
Query: 1498 TVFF--FGSMYKSEYIKLPPDLISSDILSRLQAL 1529
+ ++K P + LS L L
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKG--LSHLHIL 541
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 2e-12
Identities = 38/214 (17%), Positives = 66/214 (30%), Gaps = 29/214 (13%)
Query: 1384 DNDLQTLPGRP--SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-T 1440
N L+ LP L +L + N + + P + + LKVLNL + L + T
Sbjct: 34 HNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKT 92
Query: 1441 LVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTV 1499
L L L + + L LDL + +L +L+ L
Sbjct: 93 FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL-- 150
Query: 1500 FFFGSMYKSEYIKLPPDLISSDILSRLQALETLS----IDVHPGDKRWDKDVKIVITEVS 1555
+ ++ L + + S L+ LE LS + PG
Sbjct: 151 ----LLSNNKIQALKSEELDIFANSSLKKLE-LSSNQIKEFSPGC-------------FH 192
Query: 1556 GLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTE 1589
+ +L L + ++ N +
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 5e-12
Identities = 35/161 (21%), Positives = 58/161 (36%), Gaps = 20/161 (12%)
Query: 1384 DNDLQTLPGRP----SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-P 1438
++ L T NL L L N L V+ F + L+ L I+ L
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289
Query: 1439 ETLVNLKCLQILILRD--------CDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI- 1488
+L L ++ L L+ L + L+CLE L++ +I + +
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349
Query: 1489 GKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQAL 1529
L +L+YL++ S + L + S S L L
Sbjct: 350 TGLINLKYLSL----SNSFTSLRTLTNETFVSLAHSPLHIL 386
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 2e-11
Identities = 38/178 (21%), Positives = 65/178 (36%), Gaps = 31/178 (17%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCR-LRVIPPSFFE--LMTSLKVLNLSKTRIKSL- 1437
DND+ + NL L L + LR + F + L +LNL+K +I +
Sbjct: 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397
Query: 1438 PETLVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKE-IGKLTSLR 1495
+ L L++L L + L + LE + + L + L + + SL+
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457
Query: 1496 YL------------TVFFFGSMYKSEYIKLPPDL-------ISSDILSRLQALETLSI 1534
L + F + + DL I+ D+L L+ LE L +
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRNLTIL----DLSNNNIANINDDMLEGLEKLEILDL 511
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 3e-11
Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 16/128 (12%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVI--------PPSFFELMTSLKVLNLSKTR 1433
+N++ + L L LQ N L + P F + ++ L +LNL
Sbjct: 489 NNNIANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547
Query: 1434 IKSL-PETLVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI--G 1489
+ E +L L+I+ L L LP V + L+ L+L+ I + K++
Sbjct: 548 FDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606
Query: 1490 KLTSLRYL 1497
+L L
Sbjct: 607 AFRNLTEL 614
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 3e-07
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 1385 NDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETL- 1441
N +P L + L N L +P S F SLK LNL K I S+ + +
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604
Query: 1442 -VNLKCLQILILRDCDF 1457
+ L L +R F
Sbjct: 605 GPAFRNLTELDMRFNPF 621
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 6e-07
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 1395 SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILR 1453
+L L L+ N IP F+ + LK+++L + +L N L+ L L+
Sbjct: 534 GLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592
Query: 1454 DCDFLFVLPPEV--GSLECLEVLDLRG 1478
+ + + +V + L LD+R
Sbjct: 593 K-NLITSVEKKVFGPAFRNLTELDMRF 618
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 14/115 (12%)
Query: 1422 TSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEI 1481
S +V + S ++ +P+ L + +L L + L LD+ I
Sbjct: 4 VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 1482 KML-PKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSID 1535
L P+ KL L+ L + ++ +L +S + L L +
Sbjct: 62 SKLEPELCQKLPMLKVLNL---------QHNEL--SQLSDKTFAFCTNLTELHLM 105
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 3e-13
Identities = 38/163 (23%), Positives = 56/163 (34%), Gaps = 31/163 (19%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-T 1440
N ++T+ NL TL L N RL IP F ++ LK L L I+S+P
Sbjct: 97 RNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA 155
Query: 1441 LVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTV 1499
+ L+ L L + L + L L L+L ++ +P + L L L
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDEL-- 212
Query: 1500 FFFGSMYKSEYIKLPPDL-------ISSDILSRLQALETLSID 1535
DL I L L+ L +
Sbjct: 213 ----------------DLSGNHLSAIRPGSFQGLMHLQKLWMI 239
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 9e-13
Identities = 44/197 (22%), Positives = 75/197 (38%), Gaps = 27/197 (13%)
Query: 1383 MDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TL 1441
+ +L+ +P S N L L N ++++I + F+ + L++L LS+ I+++
Sbjct: 51 VRKNLREVPDGIS-TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF 108
Query: 1442 VNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYLTV 1499
L L L L D L +P L L+ L LR I+ +P ++ SLR L
Sbjct: 109 NGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL-- 165
Query: 1500 FFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIV-ITEVSGLT 1558
E +L IS L L L++ + I ++ L
Sbjct: 166 ------DLGELKRL--SYISEGAFEGLSNLRYLNLA----------MCNLREIPNLTPLI 207
Query: 1559 KLSSLSFHFPEIECVAE 1575
KL L + +
Sbjct: 208 KLDELDLSGNHLSAIRP 224
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 1e-11
Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 31/163 (19%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETL 1441
+N ++++P P+L L L RL I FE +++L+ LNL+ ++ +P L
Sbjct: 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NL 203
Query: 1442 VNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTV 1499
L L L L L + P L L+ L + ++I+++ + L SL +
Sbjct: 204 TPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI-- 260
Query: 1500 FFFGSMYKSEYIKLPPDL-------ISSDILSRLQALETLSID 1535
+L + D+ + L LE + +
Sbjct: 261 ----------------NLAHNNLTLLPHDLFTPLHHLERIHLH 287
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 1e-10
Identities = 36/202 (17%), Positives = 68/202 (33%), Gaps = 50/202 (24%)
Query: 1391 PGRPSC-PNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQ 1448
P SC + R LR +P T+ ++LNL + +I+ + + +L+ L+
Sbjct: 36 PSVCSCSNQFSKVICVRK-NLREVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLE 91
Query: 1449 ILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYLTVFFFGSMY 1506
IL L + + L L L+L + +P L+ L+ L
Sbjct: 92 ILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL--------- 141
Query: 1507 KSEYIKLPPDL-------ISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVS---- 1555
L I S +R+ +L L + + ++ +S
Sbjct: 142 ---------WLRNNPIESIPSYAFNRIPSLRRLDLG------ELKR-----LSYISEGAF 181
Query: 1556 -GLTKLSSLSFHFPEIECVAEF 1576
GL+ L L+ + +
Sbjct: 182 EGLSNLRYLNLAMCNLREIPNL 203
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 5e-13
Identities = 50/231 (21%), Positives = 91/231 (39%), Gaps = 36/231 (15%)
Query: 1365 LTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSL 1424
+T+ ++ + + + T+ G NL+ L L+ N ++ + P + +T +
Sbjct: 31 VTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN-QITDLAP--LKNLTKI 87
Query: 1425 KVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML 1484
L LS +K++ + L+ ++ L L V + L L+VL L +I +
Sbjct: 88 TELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI 144
Query: 1485 PKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWD 1544
+ LT+L+YL S+ ++ L P L+ L L TL D
Sbjct: 145 S-PLAGLTNLQYL------SIGNAQVSDLTP-------LANLSKLTTLKAD--------- 181
Query: 1545 KDVKIV-ITEVSGLTKLSSLSFHFPEIECVAEF-----LKGSAWNNQQLTE 1589
D KI I+ ++ L L + +I V+ L NQ +T
Sbjct: 182 -DNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN 231
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 8e-09
Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 32/170 (18%)
Query: 1394 PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILR 1453
P+ N + + ++ V + + L+ T + ++ E + L L L L+
Sbjct: 16 PALANAIKIAAGKS---NVTDTVTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELK 71
Query: 1454 DCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKL 1513
D + L P + +L + L+L G +K + I L S++ L + ++ +
Sbjct: 72 DNQ-ITDLAP-LKNLTKITELELSGNPLKNV-SAIAGLQSIKTL------DLTSTQITDV 122
Query: 1514 PPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSL 1563
P L+ L L+ L +D++ IT +S L L++L
Sbjct: 123 TP-------LAGLSNLQVLYLDLNQ------------ITNISPLAGLTNL 153
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 8e-13
Identities = 76/434 (17%), Positives = 129/434 (29%), Gaps = 77/434 (17%)
Query: 1385 NDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TL 1441
N ++T+ P L L L I F + +L++L+L ++I L
Sbjct: 34 NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93
Query: 1442 VNLKCLQILILRDCDF-LFVLPPEV-GSLECLEVLDLRGTEIKMLP--KEIGKLTSLRYL 1497
L L L L C VL +L+ L LDL +I+ L GKL SL+ +
Sbjct: 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153
Query: 1498 TVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGD-KRWDKDVKIVITEVSG 1556
S + + L LQ +
Sbjct: 154 DF----SSNQIFL-------VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202
Query: 1557 LTKLSSLSFHFPEIECVAEFLKGSAWNN-QQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQ 1615
L L + G+ N + F ++ H +
Sbjct: 203 NMVLEILDVSGNGWTVD---ITGNFSNAISKSQAFSLILAHHIMGA-------------- 245
Query: 1616 HDRCLRFVNGKNVPPEVIQILIHSTAFYVD-HHLSIVSLSDFGVGYMSGLKFCIISECLK 1674
F N K+ L S+ ++D H + SL+ + LK ++ K
Sbjct: 246 ---GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-K 301
Query: 1675 IKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAE---LRILSIHACRHLE 1731
I + D F L+NL L +L+ G L +F + + +
Sbjct: 302 INKIADE------AFYGLDNLQ--VL-NLSYNLLGELYSSNFYGLPKVAYIDLQKNHI-- 350
Query: 1732 YVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIW 1791
+ +FL KL+ L + ++ +PS+ + L
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNA------------LTTIHFIPSIPDIFLSG-------- 390
Query: 1792 RNDWPSLEYISFYG 1805
N +L I+
Sbjct: 391 -NKLVTLPKINLTA 403
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 1e-09
Identities = 60/419 (14%), Positives = 123/419 (29%), Gaps = 108/419 (25%)
Query: 1397 PNLLTLFLQRNCRLRVIPPSFFELM--TSLKVLNLSKTRIKSL-PETLVNLKCLQILILR 1453
+++ + ++ + F + +S++ L+LS + SL LK L++L L
Sbjct: 240 HHIMGAGFGFH-NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298
Query: 1454 DCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYLTVFFFGSMYKSEYIK 1512
+ L+ L+VL+L + L L + Y+ + +
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL---------QKNH 349
Query: 1513 LPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572
+ +I L+ L+TL + + +T + + + + ++
Sbjct: 350 IA--IIQDQTFKFLEKLQTLDLRDNA------------LTTIHFIPSIPDIFLSGNKLVT 395
Query: 1573 VAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPEV 1632
L + N+ + VP
Sbjct: 396 ----LPKINLTANLI----------------------HLSENRLENLDILYFLLRVP--- 426
Query: 1633 IQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSL 1692
HL I+ L+ S C + + T + PSL
Sbjct: 427 --------------HLQILILNQ-----------NRFSSC--------SGDQTPSENPSL 453
Query: 1693 ENLTLNHLWDLTCIWQGILPEGSFAE---LRILSIHACRHLEYVFTCSMIQFLAKLEELT 1749
E L L L W+ L F L++L ++ L + + L L L+
Sbjct: 454 EQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHNY-LNSL-PPGVFSHLTALRGLS 510
Query: 1750 VEYCLAVKSIILDGEITY-SSCIMLPSLKKLRLHHLPELANIWRNDWPSLEYISFYGCP 1807
+ +T S + +L+ L + +L + + SL +
Sbjct: 511 LNSN----------RLTVLSHNDLPANLEILDISR-NQLLAPNPDVFVSLSVLDITHNK 558
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 1e-09
Identities = 29/130 (22%), Positives = 43/130 (33%), Gaps = 10/130 (7%)
Query: 1377 AKMIFFMDNDLQTLPGRP---SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTR 1433
A +I +N L+ L P+L L L +N SL+ L L +
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462
Query: 1434 IKSLPET------LVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE 1487
++ ET L LQ+L L + P L L L L + +L
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN 522
Query: 1488 IGKLTSLRYL 1497
+L L
Sbjct: 523 D-LPANLEIL 531
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 2e-09
Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 10/123 (8%)
Query: 1384 DNDLQTLPGRPSC---PNLLTLFLQRN----CRLRVIPPSFFELMTSLKVLNLSKTRIKS 1436
N + G + P+L LFL N + FE ++ L+VL L+ + S
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494
Query: 1437 LP-ETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLR 1495
LP +L L+ L L + LE+LD+ ++ ++ S+
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLTVL--SHNDLPANLEILDISRNQLLAPNPDVFVSLSVL 552
Query: 1496 YLT 1498
+T
Sbjct: 553 DIT 555
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 1e-08
Identities = 34/176 (19%), Positives = 61/176 (34%), Gaps = 21/176 (11%)
Query: 1375 THAKMIFFMDNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKT 1432
K++ N + + NL L L N L + S F + + ++L K
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKN 348
Query: 1433 RIKSLPE-TLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKL 1491
I + + T L+ LQ L LRD + + + + L G ++ LPK
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINLTA 403
Query: 1492 TSLRYL--------TVFFFGSMYKSEYIKLPPDLISS----DILSRLQALETLSID 1535
+ ++F + + + L + SS S +LE L +
Sbjct: 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 9e-13
Identities = 65/441 (14%), Positives = 139/441 (31%), Gaps = 72/441 (16%)
Query: 1398 NLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILILRDCD 1456
+ + +N L +P +L +LN+S+ I L + +++L L+ILI+
Sbjct: 1 SEFLVDRSKN-GLIHVPK---DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNR 56
Query: 1457 FLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFF-----------FGS 1504
+ L V + LE LDL ++ + +L++L + F FG+
Sbjct: 57 -IQYLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGN 113
Query: 1505 MYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLS 1564
M + +++ L + + + L + + G+ +K+ + GL ++ S
Sbjct: 114 MSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKE------DPEGLQDFNTES 167
Query: 1565 FH--FPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRF 1622
H FP + L S L + +++ + N L
Sbjct: 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTL 227
Query: 1623 VNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTK 1682
N + I+IL + S+S+ + + S
Sbjct: 228 NNIETTWNSFIRIL----QLVWHTTVWYFSISNVKLQGQLDFRDFDYS------------ 271
Query: 1683 EHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSF---AELRILSIHACRHLEYVFTCSMI 1739
SL+ L+++ + G + + + I + +
Sbjct: 272 ------GTSLKALSIHQVVSDV---FGFPQSYIYEIFSNMNIKNFTVSGT--RMVHMLCP 320
Query: 1740 QFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHH-----LPELANIWRND 1794
++ L L + + +C L L+ L L L ++A +
Sbjct: 321 SKISPFLHLDFSNN-------LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ- 372
Query: 1795 WPSLEYISFYGCPKLKKMGMD 1815
SL+ + +
Sbjct: 373 MKSLQQLDISQN-SVSYDEKK 392
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 3e-10
Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 7/130 (5%)
Query: 1374 WTHAKMIFFMDNDLQTLPGRPSC----PNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNL 1429
T + + N L+ L +L L + +N SL LN+
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406
Query: 1430 SKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEI- 1488
S + + + +++L L + +P +V LE L+ L++ ++K +P I
Sbjct: 407 SSNILTDTIFRCLPPR-IKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLKSVPDGIF 464
Query: 1489 GKLTSLRYLT 1498
+LTSL+ +
Sbjct: 465 DRLTSLQKIW 474
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 1e-12
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 8/130 (6%)
Query: 1375 THAKMIFFMDNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKT 1432
++ + + M+N++Q + +L L L RN +R I F + SL L L
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN 133
Query: 1433 RIKSLP-ETLVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGT-EIKMLPKEI- 1488
+ +P L L+ L LR+ + +P + L LDL +++ + +
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192
Query: 1489 GKLTSLRYLT 1498
L +L+YL
Sbjct: 193 EGLFNLKYLN 202
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-11
Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 31/163 (19%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETL 1441
+N ++++P P+L+ L L +L I FE + +LK LNL IK +P L
Sbjct: 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NL 214
Query: 1442 VNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTV 1499
L L+ L + + P L L+ L + +++ ++ + L SL L
Sbjct: 215 TPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL-- 271
Query: 1500 FFFGSMYKSEYIKLPPDL-------ISSDILSRLQALETLSID 1535
+L + D+ + L+ L L +
Sbjct: 272 ----------------NLAHNNLSSLPHDLFTPLRYLVELHLH 298
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 1e-09
Identities = 37/197 (18%), Positives = 62/197 (31%), Gaps = 40/197 (20%)
Query: 1391 PGRPSC-PNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQ 1448
P SC + R L +P ++ + LNL + I+ + T +L L+
Sbjct: 47 PSVCSCSNQFSKVVCTRR-GLSEVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLE 102
Query: 1449 ILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYLTVFFFGSMY 1506
+L L + + L L L+L + ++P L+ LR L
Sbjct: 103 VLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL--------- 152
Query: 1507 KSEYIKLPPDL-------ISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTK 1559
L I S +R+ +L L + K I GL
Sbjct: 153 ---------WLRNNPIESIPSYAFNRVPSLMRLDLG------ELKKLEYISEGAFEGLFN 197
Query: 1560 LSSLSFHFPEIECVAEF 1576
L L+ I+ +
Sbjct: 198 LKYLNLGMCNIKDMPNL 214
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 7/121 (5%)
Query: 1384 DNDLQTLPGRP---SCPNLLTLFLQRNCRLRVIPPSFFELMTS-LKVLNLSKTRIKSLPE 1439
+ L+ P S L + N + IP + F+ + + L L S+
Sbjct: 114 NTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG 173
Query: 1440 TLVNLKCLQILILRDCDFLFVLPPEV--GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRY 1496
N L + L +L V+ + G +LD+ T + LP + L L
Sbjct: 174 YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIA 233
Query: 1497 L 1497
Sbjct: 234 R 234
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 4/105 (3%)
Query: 1397 PNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET--LVNLKCLQILILRD 1454
+ + ++ L I P + + LK L + T +K P+ + + IL + D
Sbjct: 80 SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITD 139
Query: 1455 CDFLFVLPPEV--GSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL 1497
++ +P G L L + T L +
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAV 184
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 22/131 (16%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 1362 RAGLTEPPSEEEWTHAKMIFFMDNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFE 1419
+ PS T + + ++ L+T+P + PN+ +++ + L+ + F
Sbjct: 20 CKDIQRIPSLPPST--QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY 77
Query: 1420 LMTSLKVLNLSKTR-IKSLP-ETLVNLKCLQILILRDCDFLFVLPPE--VGSLECLEVLD 1475
++ + + + TR + + + L L L+ L + + L + P V S + +L+
Sbjct: 78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILE 136
Query: 1476 LRG-TEIKMLP 1485
+ + +P
Sbjct: 137 ITDNPYMTSIP 147
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 69.8 bits (170), Expect = 6e-12
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 8/131 (6%)
Query: 1367 EPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKV 1426
+ E+ +++ DL L + L L N RLR +PP+ + L+V
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHN-RLRALPPAL-AALRCLEV 490
Query: 1427 LNLSKTRIKSLPETLVNLKCLQILILRD---CDFLFVLPPEVGSLECLEVLDLRGTEIKM 1483
L S ++++ + NL LQ L+L + + P + S L +L+L+G +
Sbjct: 491 LQASDNALENVDG-VANLPRLQELLLCNNRLQQSAAIQP--LVSCPRLVLLNLQGNSLCQ 547
Query: 1484 LPKEIGKLTSL 1494
+L +
Sbjct: 548 EEGIQERLAEM 558
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 3e-09
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Query: 1396 CPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDC 1455
++ L L L V+ E + + L+LS R+++LP L L+CL++L D
Sbjct: 440 YADVRVLHLAHK-DLTVLC--HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496
Query: 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLP--KEIGKLTSLRYL 1497
L + V +L L+ L L ++ + + L L
Sbjct: 497 -ALENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 8e-12
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 19/141 (13%)
Query: 1395 SCPNLLTLFLQRNCRLR-VIPPSFFELMTSLKVLNLSKTRIK-SLPETLVNLKCLQILIL 1452
+C L++L L N L IP S L + L+ L L ++ +P+ L+ +K L+ LIL
Sbjct: 416 NCSELVSLHLSFN-YLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473
Query: 1453 RDCDFLFVLPPEVGSLECLEVLDLRGTEIK-MLPKEIGKLTSLRYLTVF---FFGSMYKS 1508
D +P + + L + L + +PK IG+L +L L + F G+
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN---- 529
Query: 1509 EYIKLPPDLISSDILSRLQAL 1529
+P +L L L
Sbjct: 530 ----IPAELGD---CRSLIWL 543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 2e-10
Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 25/148 (16%)
Query: 1390 LPGRPSCPNLLTLFLQRNCRLR-VIPPSFFEL--MTSLKVLNLSKTRIK-SLPETLVNLK 1445
+ G +L L L N + + LK L +S +I + +
Sbjct: 144 VSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCV 200
Query: 1446 CLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIK-MLPKEIGKLTSLRYLTVF---F 1501
L+ L + +F +P +G L+ LD+ G ++ + I T L+ L + F
Sbjct: 201 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 1502 FGSMYKSEYIKLPPDLISSDILSRLQAL 1529
G I L LQ L
Sbjct: 260 VGP-------------IPPLPLKSLQYL 274
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 3e-10
Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 7/132 (5%)
Query: 1368 PPSEEEWTHAKMIFFMDNDLQ-TLPGR-PSCPNLLTLFLQRNCRLR-VIPPSFFELMTSL 1424
P S + + + N L+ +P L TL L N L IP T+L
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNC-TNL 492
Query: 1425 KVLNLSKTRIK-SLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIK- 1482
++LS R+ +P+ + L+ L IL L + F +P E+G L LDL
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 1483 MLPKEIGKLTSL 1494
+P + K +
Sbjct: 553 TIPAAMFKQSGK 564
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 3e-10
Identities = 39/144 (27%), Positives = 56/144 (38%), Gaps = 21/144 (14%)
Query: 1395 SCPNLLTLFLQRNCRLR-VIPPSFFELMTSLKVLNLSKTRIK-SLPETLVNLKC-LQILI 1451
SC L +L L N +P M LKVL+LS LPE+L NL L L
Sbjct: 316 SCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374
Query: 1452 LRDCDFLFVLPPEVG--SLECLEVLDLRGTEIK-MLPKEIGKLTSLRYLTVF---FFGSM 1505
L +F + P + L+ L L+ +P + + L L + G+
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT- 433
Query: 1506 YKSEYIKLPPDLISSDILSRLQAL 1529
+P L S LS+L+ L
Sbjct: 434 -------IPSSLGS---LSKLRDL 447
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 4e-10
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 1395 SCPNLLTLFLQRNCRLR-VIPPSFFELMTSLKVLNLSKTRIK-SLPETLV-NLKCLQILI 1451
+C L L + N + IPP + SL+ L+L++ + +P+ L L L
Sbjct: 245 TCTELKLLNISSN-QFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300
Query: 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIK-MLPKE-IGKLTSLRYL 1497
L F +PP GS LE L L LP + + K+ L+ L
Sbjct: 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 2e-09
Identities = 37/149 (24%), Positives = 56/149 (37%), Gaps = 23/149 (15%)
Query: 1395 SCPNLLTLFLQRNCRLR-VIPPSFFELMTSLKVLNLSKTRIK-SLPETLVN--LKCLQIL 1450
L L L N +P S L SL L+LS + L LQ L
Sbjct: 341 KMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399
Query: 1451 ILRDCDFLFVLPPEVGSLECLEVLDLRGTEIK-MLPKEIGKLTSLRYLTVF---FFGSMY 1506
L++ F +PP + + L L L + +P +G L+ LR L ++ G
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE-- 457
Query: 1507 KSEYIKLPPDLISSDILSRLQALETLSID 1535
+P + L ++ LETL +D
Sbjct: 458 ------IPQE------LMYVKTLETLILD 474
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 26/130 (20%), Positives = 38/130 (29%), Gaps = 16/130 (12%)
Query: 1407 NCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPP--E 1464
N + S L T L+ L LS + I L L L +
Sbjct: 63 NVGFSAVSSSLLSL-TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTS 121
Query: 1465 VGSLECLEVLDLRGT--EIKMLPKEIGKLTSLRYL---TVFFFGSMYKSEYIKLPPDLIS 1519
+GS L+ L++ + KL SL L G+ +
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA--------NVVGWVL 173
Query: 1520 SDILSRLQAL 1529
SD L+ L
Sbjct: 174 SDGCGELKHL 183
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 1e-06
Identities = 24/131 (18%), Positives = 38/131 (29%), Gaps = 33/131 (25%)
Query: 1395 SCPNLLTLFLQRNCRLR-VIPPSFFELMTSLKVLNLSKTRIKSL---------------- 1437
C +L+ L L N IP + F+ + ++ R +
Sbjct: 536 DCRSLIWLDLNTN-LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594
Query: 1438 ------PETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDL-----RGTEIKMLPK 1486
E L L + + P + + LD+ G I PK
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG-YI---PK 650
Query: 1487 EIGKLTSLRYL 1497
EIG + L L
Sbjct: 651 EIGSMPYLFIL 661
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 11/109 (10%)
Query: 1395 SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIK-SLPETLVNLKCLQILILR 1453
+ P+F S+ L++S + +P+ + ++ L IL L
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPTFDNN-GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664
Query: 1454 DCDFLFVLPPEVGSLECLEVLD-----LRGTEIKMLPKEIGKLTSLRYL 1497
D +P EVG L L +LD L G +P+ + LT L +
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGR----IPQAMSALTMLTEI 709
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 9e-12
Identities = 36/153 (23%), Positives = 70/153 (45%), Gaps = 15/153 (9%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETL 1441
N + T+ S +L L L N L + S+F+ ++SL LNL K+L ET
Sbjct: 85 SNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETS 143
Query: 1442 V--NLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYL 1497
+ +L LQIL + + D + + L LE L++ ++++ + + ++ +L
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203
Query: 1498 TVFFFGSMYKSEYIKLPPDLISSDILSRLQALE 1530
++ ++I L + D+ S ++ LE
Sbjct: 204 I------LHMKQHILLLEIFV--DVTSSVECLE 228
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 6e-11
Identities = 42/191 (21%), Positives = 64/191 (33%), Gaps = 32/191 (16%)
Query: 1384 DNDLQTLP-GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TL 1441
L ++P G + +L L N R+ I S + +L+ L L+ I ++ E +
Sbjct: 40 SGSLNSIPSGLT--EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96
Query: 1442 VNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVF 1500
+L L+ L L L L L L L+L G K L E + L L +
Sbjct: 97 SSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLG-ETSLFSHLTKLQIL 154
Query: 1501 FFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEV-----S 1555
G+M I + L LE L ID +
Sbjct: 155 RVGNMDTFTK-------IQRKDFAGLTFLEELEIDASD------------LQSYEPKSLK 195
Query: 1556 GLTKLSSLSFH 1566
+ +S L H
Sbjct: 196 SIQNVSHLILH 206
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 8e-10
Identities = 26/159 (16%), Positives = 55/159 (34%), Gaps = 13/159 (8%)
Query: 1384 DNDLQTLPGRP---SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-E 1439
N +TL L L + I F +T L+ L + + ++S +
Sbjct: 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192
Query: 1440 TLVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLT 1498
+L +++ + LIL +L +E L+LR T++ + L
Sbjct: 193 SLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFH-----FSELSTGE 246
Query: 1499 VFFFGSMYKSEYIKLPPDLISS--DILSRLQALETLSID 1535
+ +K+ + + +L+++ L L
Sbjct: 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 9e-10
Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 14/127 (11%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET- 1440
+DLQ+ + S N+ L L + ++ F ++ +S++ L L T + + +
Sbjct: 183 ASDLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241
Query: 1441 --------LVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEI-GKL 1491
L+ + + + D LF + + + L L+ ++K +P I +L
Sbjct: 242 LSTGETNSLIKKFTFRNVKITDES-LFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRL 300
Query: 1492 TSLRYLT 1498
TSL+ +
Sbjct: 301 TSLQKIW 307
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 68.6 bits (167), Expect = 1e-11
Identities = 50/210 (23%), Positives = 86/210 (40%), Gaps = 35/210 (16%)
Query: 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTS 1423
+T+ ++ E I ++D++++ G PN+ LFL N +L I P + +
Sbjct: 32 SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP--LTNLKN 88
Query: 1424 LKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKM 1483
L L L + +IK L +L +LK L+ L L + + + L LE L L +I
Sbjct: 89 LGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNG-ISDING-LVHLPQLESLYLGNNKITD 145
Query: 1484 LPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDI--LSRLQALETLSIDVHPGDK 1541
+ + +LT L L++ E ++ SDI L+ L L+ L +
Sbjct: 146 IT-VLSRLTKLDTLSL---------EDNQI------SDIVPLAGLTKLQNLYLS------ 183
Query: 1542 RWDKDVKIV-ITEVSGLTKLSSLSFHFPEI 1570
I + ++GL L L E
Sbjct: 184 ----KNHISDLRALAGLKNLDVLELFSQEC 209
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 1e-08
Identities = 52/280 (18%), Positives = 104/280 (37%), Gaps = 38/280 (13%)
Query: 1380 IFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE 1439
+ ++ + + + L++ V + S+ + + + IKS+ +
Sbjct: 4 TITVSTPIKQIFPDDAFAETIKDNLKKK---SVTDAVTQNELNSIDQIIANNSDIKSV-Q 59
Query: 1440 TLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTV 1499
+ L + L L L + P + +L+ L L L +IK L + L L+ L++
Sbjct: 60 GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116
Query: 1500 FF--------FGSMYKSEYIKLPPDLISS-DILSRLQALETLSIDVHPGDKRWDKDVKIV 1550
+ + E + L + I+ +LSRL L+TLS++ D +I
Sbjct: 117 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE----------DNQIS 166
Query: 1551 -ITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYV 1609
I ++GLTKL +L I + + L + + ++ ++ V
Sbjct: 167 DIVPLAGLTKLQNLYLSKNHISDLRAL-----AGLKNLDVLELFSQECLNKPINHQSNLV 221
Query: 1610 QCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLS 1649
+ ++ +G V PE+I V HL
Sbjct: 222 VPN------TVKNTDGSLVTPEIISDDGDYEKPNVKWHLP 255
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 6e-08
Identities = 34/150 (22%), Positives = 52/150 (34%), Gaps = 14/150 (9%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
N + + G P L +L+L N ++ I +T L L+L +I + L
Sbjct: 118 HNGISDINGLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDIVP-LAG 173
Query: 1444 LKCLQILILRD---CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTV 1499
L LQ L L D + L+ L+VL+L E P L +
Sbjct: 174 LTKLQNLYLSKNHISDL-----RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK- 227
Query: 1500 FFFGSMYKSEYIKLPPDLISSDILSRLQAL 1529
GS+ E I D ++ L
Sbjct: 228 NTDGSLVTPEIISDDGDYEKPNVKWHLPEF 257
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 3e-11
Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 16/162 (9%)
Query: 1380 IFFMDND-LQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKS 1436
I ND L+ + + P L + +++ L I P F+ + +L+ L +S T IK
Sbjct: 59 IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118
Query: 1437 LPE-TLVNLKCLQILILRDCDFLFVLPPEV--GSLECLEVLDLRGTEIKMLPKEIGKLTS 1493
LP+ ++ +L ++D + + G +L L I+ + T
Sbjct: 119 LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ 178
Query: 1494 LRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSID 1535
L L S+ L + + +D+ L I
Sbjct: 179 LDEL--------NLSDNNNL--EELPNDVFHGASGPVILDIS 210
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 6e-10
Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 8/119 (6%)
Query: 1384 DNDLQTLPGR-PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL--PET 1440
++ + +P P N + L +LRVI F L+ + +S+ + + +
Sbjct: 18 ESKVTEIPSDLP--RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74
Query: 1441 LVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYL 1497
NL L + + + L + PE +L L+ L + T IK LP L
Sbjct: 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 1384 DNDLQTLPGRP-SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TL 1441
N +Q + + L L L N L +P F + +L++S+TRI SLP L
Sbjct: 163 KNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222
Query: 1442 VNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDL 1476
NLK L+ + L LP + L L L
Sbjct: 223 ENLKKLRARSTYN---LKKLPT-LEKLVALMEASL 253
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 1385 NDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLV 1442
N+L+ LP + L + R R+ +P E + L+ + +K LP TL
Sbjct: 188 NNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTY--NLKKLP-TLE 243
Query: 1443 NLKCLQILIL---RDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTV 1499
L L L C ++ L + + E+ + + G+ +SL
Sbjct: 244 KLVALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNE 303
Query: 1500 FFFGSMYKSEY 1510
+ + Y
Sbjct: 304 SSYSRGFDMTY 314
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 3e-11
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 1395 SCPNLLTLFLQRNCRLR-VIPPSFFELMTSLKVLNLSKTRIK-SLPETLVNLKCLQILIL 1452
+ P L L++ L IPP+ +L T L L ++ T + ++P+ L +K L L
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 1453 RDCDFLFVLPPEVGSLECLEVLDLR-----GTEIKMLPKEIGKLTSL 1494
LPP + SL L + G +P G + L
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGA----IPDSYGSFSKL 175
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 5e-10
Identities = 31/137 (22%), Positives = 46/137 (33%), Gaps = 36/137 (26%)
Query: 1395 SCPNLLTLFLQRNCRLR-VIPPSFFELMTSLKVLNLSKTRIK------------------ 1435
S PNL+ + N R+ IP S+ + +S+ R+
Sbjct: 147 SLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS 205
Query: 1436 ------SLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDL-----RGTEIKML 1484
+ K Q + L F L +VG + L LDL GT L
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGT----L 260
Query: 1485 PKEIGKLTSLRYLTVFF 1501
P+ + +L L L V F
Sbjct: 261 PQGLTQLKFLHSLNVSF 277
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-08
Identities = 32/155 (20%), Positives = 48/155 (30%), Gaps = 26/155 (16%)
Query: 1358 LLGARAGLTEPPSEEEWTHAKMIFFMDNDLQTLPG-----RPSCPNLLTLFLQRNCRLR- 1411
LL + L P + W D +T G + L L L
Sbjct: 11 LLQIKKDLGNPTTLSSWLPT-----TDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-NLPK 64
Query: 1412 --VIPPSFFELMTSLKVLNLSKT-RIK-SLPETLVNLKCLQILILRDCDFLFVLPPEVGS 1467
IP S L L L + + +P + L L L + + +P +
Sbjct: 65 PYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123
Query: 1468 LECLEVLDLR-----GTEIKMLPKEIGKLTSLRYL 1497
++ L LD GT LP I L +L +
Sbjct: 124 IKTLVTLDFSYNALSGT----LPPSISSLPNLVGI 154
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 8e-04
Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 24/103 (23%)
Query: 1437 LPETLVNLKCLQILILRDCDF--LFVLPPEVGSLECLEVLDLRGT-----EIKMLPKEIG 1489
L +T + L L + + +P + +L L L + G I P I
Sbjct: 42 LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI---PPAIA 98
Query: 1490 KLTSLRYLTVF---FFGSMYKSEYIKLPPDLISSDILSRLQAL 1529
KLT L YL + G++ PD +S + L L
Sbjct: 99 KLTQLHYLYITHTNVSGAI---------PDFLSQ--IKTLVTL 130
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 3e-11
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 1375 THAKMIFFMDNDLQTLPGRPSC---PNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSK 1431
++ ++ N+L L + NL +L L N L I F + +L+ L+LS
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSS 97
Query: 1432 TRIKSLP-ETLVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI- 1488
+ +L +L+ L++L+L + + V+ + L+ L L +I P E+
Sbjct: 98 NHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156
Query: 1489 ---GKLTSLRYLT 1498
KL L L
Sbjct: 157 KDGNKLPKLMLLD 169
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 7e-05
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 13/85 (15%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFF---ELMTSLKVLNLSKTRIKSLP 1438
+N + + L L+L ++ P + L +L+LS ++K LP
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLS-QNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179
Query: 1439 -ETLVNLKCLQILILR------DCD 1456
L L L +CD
Sbjct: 180 LTDLQKLPAWVKNGLYLHNNPLECD 204
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 5e-11
Identities = 17/125 (13%), Positives = 38/125 (30%), Gaps = 12/125 (9%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETL 1441
N + + NL L L N + + L+ L+L+ ++ +P L
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 259
Query: 1442 VNLKCLQILILRD------CDFLFVLPPEVGSLECLEVLDLRGTEIKM--LPKEI-GKLT 1492
+ K +Q++ L + F P + L ++ + +
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319
Query: 1493 SLRYL 1497
+
Sbjct: 320 VRAAV 324
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-10
Identities = 38/183 (20%), Positives = 68/183 (37%), Gaps = 32/183 (17%)
Query: 1375 THAKMIFFMDNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKT 1432
++ +N + + + NL TL L N ++ I P F + L+ L LSK
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKN 110
Query: 1433 RIKSLPETLVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEIG-- 1489
++K LPE + K LQ L + + + + + V L + V++L +K E G
Sbjct: 111 QLKELPEKM--PKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 1490 -KLTSLRYLTVFFFGSMYKSEYIKLPPDL----------------ISSDILSRLQALETL 1532
+ L Y+ + + +P L + + L L L L
Sbjct: 168 QGMKKLSYI------RIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 221
Query: 1533 SID 1535
+
Sbjct: 222 GLS 224
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 5e-11
Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 8/127 (6%)
Query: 1375 THAKMIFFMDNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKT 1432
++ +N L T L L L R L + + L L+LS
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--DGTLPVLGTLDLSHN 87
Query: 1433 RIKSLPETLVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GK 1490
+++SLP L L +L + L LP L L+ L L+G E+K LP +
Sbjct: 88 QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 1491 LTSLRYL 1497
L L
Sbjct: 147 TPKLEKL 153
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 8e-11
Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 5/139 (3%)
Query: 1365 LTEPPSEEEWTHAKMIFFMDNDLQTLPGRPS-CPNLLTLFLQRNCRLRVIPPSFFELMTS 1423
LT+ + + N LQ+LP P L L + N RL +P +
Sbjct: 67 LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGE 125
Query: 1424 LKVLNLSKTRIKSLPE-TLVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEI 1481
L+ L L +K+LP L L+ L L + + L LP + LE L+ L L+ +
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSL 184
Query: 1482 KMLPKEIGKLTSLRYLTVF 1500
+PK L + +
Sbjct: 185 YTIPKGFFGSHLLPFAFLH 203
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETL 1441
N+L+TLP P L L L N L +P + +L L L + + ++P+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 1442 VNLKCLQILILR----DCD 1456
L L C+
Sbjct: 192 FGSHLLPFAFLHGNPWLCN 210
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 6e-11
Identities = 29/189 (15%), Positives = 57/189 (30%), Gaps = 29/189 (15%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
++ + + G L L N + + S T+L L ++ +L +
Sbjct: 51 NSSITDMTGIEKLTGLTKLICTSN-NITTLDLS---QNTNLTYLACDSNKLTNLD--VTP 104
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL------ 1497
L L L L L V L L+ + + + T L L
Sbjct: 105 LTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNK 159
Query: 1498 --TVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVS 1555
T + + + I+ +S+ + L L+ D I +++
Sbjct: 160 KITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCD----------TNNITKLDLN 209
Query: 1556 GLTKLSSLS 1564
+L+ L
Sbjct: 210 QNIQLTFLD 218
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 5e-09
Identities = 30/178 (16%), Positives = 56/178 (31%), Gaps = 23/178 (12%)
Query: 1397 PNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCD 1456
N + ++ E + +L L+ + I + + L L LI +
Sbjct: 18 DNFASEVAA-AFEMQATDTISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNN 75
Query: 1457 FLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL-------TVFFFGSMYKSE 1509
+ L + L L ++ L + LT L YL T
Sbjct: 76 -ITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLT 130
Query: 1510 YIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHF 1567
Y+ + ++ +S L L + KI +V+ T+L++L F
Sbjct: 131 YLNCARNTLTEIDVSHNTQLTELDC---------HLNKKITKLDVTPQTQLTTLDCSF 179
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 8e-09
Identities = 31/194 (15%), Positives = 55/194 (28%), Gaps = 27/194 (13%)
Query: 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL 1437
+ N L + L L N ++ + T L L+ S +I L
Sbjct: 130 TYLNCARNTLTEIDVS-HNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL 185
Query: 1438 PETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL 1497
+ K L L + + L + L LD ++ + + LT L Y
Sbjct: 186 D--VSQNKLLNRLNCDTNN-ITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYF 238
Query: 1498 TVFF-------FGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIV 1550
++ K + + L+ L + KI
Sbjct: 239 DCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR---------KIK 289
Query: 1551 ITEVSGLTKLSSLS 1564
+V+ T+L L
Sbjct: 290 ELDVTHNTQLYLLD 303
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 2e-08
Identities = 33/189 (17%), Positives = 56/189 (29%), Gaps = 30/189 (15%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
N + L L L N + + L L+ S ++ + +
Sbjct: 179 FNKITELDV-SQNKLLNRLNCDTN-NITKLD---LNQNIQLTFLDCSSNKLTEID--VTP 231
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL------ 1497
L L L L V +L L L T++ + + T L Y
Sbjct: 232 LTQLTYFDCSVNP-LTELD--VSTLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCR 286
Query: 1498 --TVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVS 1555
+ + I+ LS+ L L ++ + ++ +VS
Sbjct: 287 KIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLN----------NTELTELDVS 336
Query: 1556 GLTKLSSLS 1564
TKL SLS
Sbjct: 337 HNTKLKSLS 345
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 4e-06
Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 8/104 (7%)
Query: 1395 SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRD 1454
L L Q + + L L L+ T + L + + L+ L +
Sbjct: 295 HNTQLYLLDCQAA-GITELD---LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVN 348
Query: 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLT 1498
VG + L + +PKE SL
Sbjct: 349 AHIQDF--SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAV 390
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 9e-06
Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 13/122 (10%)
Query: 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL 1437
++ + L P L+ L+L L + T LK L+ I+
Sbjct: 300 YLLDCQAAGITELDLS-QNPKLVYLYLNNT-ELTELD---VSHNTKLKSLSCVNAHIQDF 354
Query: 1438 PETLVNLKCLQILILRDCDFLFVLPPEVGSLECL------EVLDLRGTEIKMLPKEIGKL 1491
+ + L + +P E + L ++LD G + + P + G
Sbjct: 355 SS-VGKIPALNNNFEAE-GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVY 412
Query: 1492 TS 1493
Sbjct: 413 DQ 414
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 7e-11
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 10/131 (7%)
Query: 1375 THAKMIFFMDNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKT 1432
K + N L+ L S P L L L R ++ I ++ ++ L L L+
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN 86
Query: 1433 RIKSLP-ETLVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEIG- 1489
I+SL L LQ L+ + + L L G L+ L+ L++ I+
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLP-EY 144
Query: 1490 --KLTSLRYLT 1498
LT+L +L
Sbjct: 145 FSNLTNLEHLD 155
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 1384 DNDLQTLPGRP--SCPNLLTLFLQRNCRLRVIP-PSFFELMTSLKVLNLSKTRIKSLPE- 1439
+ +L +L P L L + N ++ P +F +T+L+ L+LS +I+S+
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Query: 1440 ---TLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEI-GKLTSLR 1495
L + L + + + + + P L+ L L ++K +P I +LTSL+
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQ 227
Query: 1496 YL 1497
+
Sbjct: 228 KI 229
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 7e-09
Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 26/170 (15%)
Query: 1384 DNDLQTLPGRP--SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-- 1439
N +Q+L +L L L + + +LK LN++ I+S
Sbjct: 85 GNPIQSLALGAFSGLSSLQKLVAV-ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143
Query: 1440 TLVNLKCLQILILRDCDFLFVLPPEV----GSLECLEV-LDLRGTEIKMLPKEIGKLTSL 1494
NL L+ L L + + + L + LDL + + K L
Sbjct: 144 YFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202
Query: 1495 RYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWD 1544
+ L + KS + I RL +L+ + + +P WD
Sbjct: 203 KEL--ALDTNQLKS---------VPDGIFDRLTSLQKIWLHTNP----WD 237
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 8e-11
Identities = 49/209 (23%), Positives = 86/209 (41%), Gaps = 35/209 (16%)
Query: 1365 LTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSL 1424
+T+ ++ E I ++D++++ G PN+ LFL N +L I P + +L
Sbjct: 36 VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP--LANLKNL 92
Query: 1425 KVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML 1484
L L + ++K L +L +LK L+ L L + + + L LE L L +I +
Sbjct: 93 GWLFLDENKVKDL-SSLKDLKKLKSLSLEHNG-ISDING-LVHLPQLESLYLGNNKITDI 149
Query: 1485 PKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDI--LSRLQALETLSIDVHPGDKR 1542
+ +LT L L++ E ++ SDI L+ L L+ L +
Sbjct: 150 -TVLSRLTKLDTLSL---------EDNQI------SDIVPLAGLTKLQNLYLS------- 186
Query: 1543 WDKDVKI-VITEVSGLTKLSSLSFHFPEI 1570
I + ++GL L L E
Sbjct: 187 ---KNHISDLRALAGLKNLDVLELFSQEC 212
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 4e-08
Identities = 30/192 (15%), Positives = 69/192 (35%), Gaps = 32/192 (16%)
Query: 1372 EEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSK 1431
+ + + + ++ + + ++ + + + ++ L L+
Sbjct: 21 DAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNG 77
Query: 1432 TRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKL 1491
++ + + L NLK L L L + + L + L+ L+ L L I + + L
Sbjct: 78 NKLTDI-KPLANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLEHNGISDIN-GLVHL 133
Query: 1492 TSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVI 1551
L L + ++ + LSRL L+TLS++ + I
Sbjct: 134 PQLESL------YLGNNKITDITV-------LSRLTKLDTLSLEDNQ------------I 168
Query: 1552 TEVSGLTKLSSL 1563
+++ L L+ L
Sbjct: 169 SDIVPLAGLTKL 180
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 3e-07
Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 7/116 (6%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
N + + G P L +L+L N ++ I +T L L+L +I + L
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDIVP-LAG 176
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGK-LTSLRYLT 1498
L LQ L L + L + L+ L+VL+L E P L +
Sbjct: 177 LTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 9e-11
Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 24/178 (13%)
Query: 1374 WTHAKMIFFMDNDLQTLP----GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNL 1429
++ F + + + T L ++ ++ + S F T L+ L L
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS-KIFALLKSVFSHFTDLEQLTL 306
Query: 1430 SKTRIKSLPE-TLVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKE 1487
++ I + + L L L L +FL + + +L+ LEVLDL I+ L +
Sbjct: 307 AQNEINKIDDNAFWGLTHLLKLNLSQ-NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365
Query: 1488 I-GKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWD 1544
L +L+ L ++ ++ +P I RL +L+ + + +P WD
Sbjct: 366 SFLGLPNLKEL------ALDTNQLKSVPD-----GIFDRLTSLQKIWLHTNP----WD 408
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 2e-10
Identities = 31/142 (21%), Positives = 49/142 (34%), Gaps = 9/142 (6%)
Query: 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELM 1421
GL + P + N + L +L L +++ VI + F +
Sbjct: 21 GLHQVPELPAHV--NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL 78
Query: 1422 TSLKVLNLSKTRIKSLPE-TLVNLKCLQILILRDCDF-LFVLPPEV-GSLECLEVLDLRG 1478
+SL +L L + L L L++L L C+ VL L LE+L LR
Sbjct: 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138
Query: 1479 TEIKMLPKEI--GKLTSLRYLT 1498
IK + + L
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLD 160
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 5e-08
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 1384 DNDLQTLPGRP--SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-T 1440
N L ++ R + L L L N +R + F + +LK L L ++KS+P+
Sbjct: 332 QNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGI 390
Query: 1441 LVNLKCLQILILR----DCD 1456
L LQ + L DC
Sbjct: 391 FDRLTSLQKIWLHTNPWDCS 410
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 1e-07
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 1397 PNLLTLFLQRNCRLRVIPP-SFFELMTSLKVLNLSKTRIKSLPE-----------TLVNL 1444
+L L L+ N ++ I P SFF M VL+L+ ++KS+ E TL+ L
Sbjct: 129 TSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187
Query: 1445 KCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEI 1488
+ + + + + + LDL G K +
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 5e-10
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 22/166 (13%)
Query: 1384 DNDLQTLP-GRPSC-PNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETL 1441
DN LQTLP G NL TL++ N +L+ +P F+ + +L L L + ++KSLP +
Sbjct: 70 DNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV 128
Query: 1442 -VNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYLT 1498
+L L L L + L LP V L L+ L L ++K +P+ KLT L+ L
Sbjct: 129 FDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL- 186
Query: 1499 VFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWD 1544
+ K + L+ L+ L + +P WD
Sbjct: 187 -KLDNNQLKR---------VPEGAFDSLEKLKMLQLQENP----WD 218
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-07
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 1384 DNDLQTLP-GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETL- 1441
L +P P+ + L LQ N +L +P F +T L++L L+ ++++LP +
Sbjct: 25 SKKLTAIPSNIPA--DTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81
Query: 1442 VNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYL 1497
LK L+ L + D L LP V L L L L ++K LP + LT L YL
Sbjct: 82 KELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 6e-10
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 12/125 (9%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETL 1441
N +Q + L L L N ++R+I + +L+ L+L ++ +P L
Sbjct: 202 HNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL 260
Query: 1442 VNLKCLQILILRDCDF------LFVLPPEVGSLECLEVLDLRGTEIKML---PKEIGKLT 1492
+LK LQ++ L + F + L + P +T
Sbjct: 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320
Query: 1493 SLRYL 1497
+
Sbjct: 321 DRLAI 325
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 35/182 (19%), Positives = 63/182 (34%), Gaps = 31/182 (17%)
Query: 1375 THAKMIFFMDNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKT 1432
++ +ND+ L +L L L N ++ I F + L+ L +SK
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKN 112
Query: 1433 RIKSLPETLVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEIGKL 1491
+ +P L L L + D + +P V L + +++ G ++ E G
Sbjct: 113 HLVEIPPNL--PSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169
Query: 1492 T--SLRYLTVFFFGSMYKSEYIKLPPDL----------------ISSDILSRLQALETLS 1533
L YL + +++ +P DL I + L R L L
Sbjct: 170 DGLKLNYL------RISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLG 223
Query: 1534 ID 1535
+
Sbjct: 224 LG 225
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 2e-09
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Query: 1398 NLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILILRDCD 1456
L L + +L IP +L L+L +I+++ L+ L L L
Sbjct: 173 KLNYLRISEA-KLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228
Query: 1457 FLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLT 1498
+ ++ L L L L ++ +P + L L+ +
Sbjct: 229 -IRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVY 270
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 1e-09
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL 1437
+ + ++ L ++ P P L L L N R+ E + +L LNLS ++K +
Sbjct: 52 EFLSLINVGLISVSNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110
Query: 1438 PE--TLVNLKCLQILILRDC 1455
L L+CL+ L L +C
Sbjct: 111 STLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 9e-06
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 1400 LTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLF 1459
L L ++ ++ +L+ L+L + S+ L L L+ L L +
Sbjct: 29 LVLDNCKSNDGKIE--GLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFG 85
Query: 1460 VLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTV 1499
L L L L+L G ++K + + L L L
Sbjct: 86 GLDMLAEKLPNLTHLNLSGNKLKDI-STLEPLKKLECLKS 124
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 33/170 (19%)
Query: 1397 PNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCD 1456
+L + L N + + + E ++K L ++ + + L L+ L + D
Sbjct: 44 NSLTYITL-ANINVTDL--TGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKD 99
Query: 1457 FLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTVFFFGSMYKSEYIKLPP 1515
P + L L +LD+ + +I L + + + + I
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI------DLSYNGAI---- 149
Query: 1516 DLISSDI--LSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSL 1563
+DI L L L++L+I D + + G+ L
Sbjct: 150 ----TDIMPLKTLPELKSLNIQ---FDG---------VHDYRGIEDFPKL 183
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 1395 SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRD 1454
+ P + ++ L N + I P + + LK LN+ + + + L L
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFS 190
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 9/88 (10%)
Query: 1397 PNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDC- 1455
+L L + + + + + ++LS + L L L+ L ++
Sbjct: 112 TSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170
Query: 1456 --DFLFVLPPEVGSLECLEVLDLRGTEI 1481
D+ + L L I
Sbjct: 171 VHDY-----RGIEDFPKLNQLYAFSQTI 193
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 1375 THAKMIFFMDNDLQTLPGR---PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSK 1431
+ + +N+ L P L + N ++ I FE + + + L+
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTS 90
Query: 1432 TRIKSLPE-TLVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI- 1488
R++++ L+ L+ L+LR + + + L + +L L +I +
Sbjct: 91 NRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149
Query: 1489 GKLTSLRYLTVF 1500
L SL L +
Sbjct: 150 DTLHSLSTLNLL 161
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 5e-09
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL 1437
+ + ++ L ++ P L L L N R+ E +L LNLS +IK L
Sbjct: 45 EFLSTINVGLTSIANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103
Query: 1438 PE--TLVNLKCLQILILRDC 1455
L L+ L+ L L +C
Sbjct: 104 STIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 26/118 (22%), Positives = 38/118 (32%), Gaps = 4/118 (3%)
Query: 1383 MDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIP-PSFFELMTSLKVLNLSKTRIKSLPETL 1441
M + + ++ L L N R + L+ L+ + S+ L
Sbjct: 3 MGRRIHLELRNRTPSDVKELVL-DNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANL 60
Query: 1442 VNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTV 1499
L L+ L L D L L L+L G +IK L I L L L
Sbjct: 61 PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL-STIEPLKKLENLKS 117
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 1e-08
Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 11/127 (8%)
Query: 1358 LLGARAGLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPS-----CPNLLTLFLQRNCRLRV 1412
GL ++ +++ + ++T G S L L L N LR
Sbjct: 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRD 242
Query: 1413 IPP-SFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECL 1471
+ + L LNLS T +K +P+ L L +L L P L +
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PAKLSVLDLSYNRLDRN--PSPDELPQV 298
Query: 1472 EVLDLRG 1478
L L+G
Sbjct: 299 GNLSLKG 305
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 1e-05
Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 14/120 (11%)
Query: 1391 PGRPSCPNLLTLFLQRNCRLRVIPPSFFEL----MTSLKVLNLSKTRIKSLP-ETLVNLK 1445
+ P+L L L RN EL LKVL++++ + E +
Sbjct: 115 LLEATGPDLNILNL-RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173
Query: 1446 CLQILILRD----CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEI----GKLTSLRYL 1497
L L L D + + L+VL LR ++ L+ L
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 26/131 (19%), Positives = 38/131 (29%), Gaps = 11/131 (8%)
Query: 1375 THAKMIFFMDNDLQTLPGRPS--CPNLLTLFLQRNCRLRVIPPS---FFELMTSLKVLNL 1429
K++ P L TL L N L +L+VL L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208
Query: 1430 SKTRIKSLPET----LVNLKCLQILILRDCDFLFVLPPEVGS-LECLEVLDLRGTEIKML 1484
+++ LQ L L L L+L T +K +
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268
Query: 1485 PKEIG-KLTSL 1494
PK + KL+ L
Sbjct: 269 PKGLPAKLSVL 279
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 1e-08
Identities = 63/413 (15%), Positives = 117/413 (28%), Gaps = 49/413 (11%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETL 1441
N + L L L L N R+R + F L+ L++S R++++
Sbjct: 61 QNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC- 118
Query: 1442 VNLKCLQILILRDCDFLFVLPP--EVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTV 1499
+ L+ L L + VLP E G+L L L L + + L + + L +
Sbjct: 119 -PMASLRHLDL-SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD--LLPVAHLHLSCI 174
Query: 1500 FFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTK 1559
+ + ++ L L + HP V V+ L
Sbjct: 175 L-------LDLVSYHIKGGETESLQIPN-TTVLHLVFHP----NSLFSVQVNMSVNALGH 222
Query: 1560 LSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRC 1619
L + + C + L + V +++ Q + +
Sbjct: 223 LQLSNIKLNDENC--QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280
Query: 1620 LRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIK--T 1677
L N E I + + L I + + + + + +E + IK +
Sbjct: 281 LNIYN--LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE-MNIKMLS 337
Query: 1678 VVDTKEHTTAVFPSLENLTLNHLWD--LTCIWQGILPEGSFAELRILSIHACRH-----L 1730
+ DT PS + T + T + L+ L +
Sbjct: 338 ISDTPFIHMVCPPSPSSFTFLNFTQNVFT-----DSVFQGCSTLKRLQTLILQRNGLKNF 392
Query: 1731 EYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHH 1783
V + L L+ +C S+ L L
Sbjct: 393 FKVA-----LMTKNMSSLETLDVSLNS---LNSHAYDRTCAWAESILVLNLSS 437
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 1e-08
Identities = 24/141 (17%), Positives = 43/141 (30%), Gaps = 29/141 (20%)
Query: 1385 NDLQTLPGRP--SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLV 1442
+D + S + L +N + L+ L L + +K+ + +
Sbjct: 339 SDTPFIHMVCPPSPSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397
Query: 1443 NLKCLQILILRDC----------DFLFVLPPEV------------GSLECL----EVLDL 1476
K + L D D + CL +VLDL
Sbjct: 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDL 457
Query: 1477 RGTEIKMLPKEIGKLTSLRYL 1497
I +PK++ L +L+ L
Sbjct: 458 HNNRIMSIPKDVTHLQALQEL 478
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 1e-07
Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 1374 WTHAKMIFFMDNDLQTLPGRPSCP----NLLTLFLQRNCRLRVIPPSFFELMTSLKVLNL 1429
+ + N L+ +L TL + N S+ VLNL
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435
Query: 1430 SKTRI-----KSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML 1484
S + + LP +++L L + + +P +V L+ L+ L++ ++K +
Sbjct: 436 SSNMLTGSVFRCLPPK------VKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLKSV 488
Query: 1485 PKEI-GKLTSLRYLTVF 1500
P + +LTSL+Y+ +
Sbjct: 489 PDGVFDRLTSLQYIWLH 505
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 6e-08
Identities = 31/134 (23%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTS 1423
+T+ S++E + + ++++Q+L G NL L L N ++ + P + +T
Sbjct: 30 SVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN-QISDLSP--LKDLTK 86
Query: 1424 LKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKM 1483
L+ L++++ R+K+L + + L L L + + + L+ LE+L +R ++K
Sbjct: 87 LEELSVNRNRLKNL-NGIPSAC-LSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKS 142
Query: 1484 LPKEIGKLTSLRYL 1497
+ +G L+ L L
Sbjct: 143 IV-MLGFLSKLEVL 155
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 37/189 (19%), Positives = 63/189 (33%), Gaps = 32/189 (16%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
+ + P N + L + + + + ++ ++ N + I+SL +
Sbjct: 6 PTPINQVFPDPGLANAVKQNLGKQ-SVTDLVS--QKELSGVQNFNGDNSNIQSL-AGMQF 61
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFG 1503
L+ L L + L P + L LE L + +K L L L
Sbjct: 62 FTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNRLKNL--NGIPSACLSRL------ 111
Query: 1504 SMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIV-ITEVSGLTKLSS 1562
+ +E L L+ LE LSI + K+ I + L+KL
Sbjct: 112 FLDNNELRDTDS-------LIHLKNLEILSIR----------NNKLKSIVMLGFLSKLEV 154
Query: 1563 LSFHFPEIE 1571
L H EI
Sbjct: 155 LDLHGNEIT 163
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443
N L+ L G L LFL N LR + +L++L++ ++KS+ L
Sbjct: 94 RNRLKNLNG-IPSACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLKSI-VMLGF 148
Query: 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE 1487
L L++L L + + + L+ + +DL G + P +
Sbjct: 149 LSKLEVLDLHGNE-ITNTGG-LTRLKKVNWIDLTGQKCVNEPVK 190
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 8e-08
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 7/137 (5%)
Query: 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTS 1423
+T+ ++ E I ++D++++ G PN+ L L N +L I + +T+
Sbjct: 30 SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGN-KLHDISA--LKELTN 86
Query: 1424 LKVLNLSKTRIKSLPETLVN-LKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEI 1481
L L L+ +++SLP + + L L+ L+L + + L LP V L L L+L ++
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLAHNQL 145
Query: 1482 KMLPKEI-GKLTSLRYL 1497
+ LPK + KLT+L L
Sbjct: 146 QSLPKGVFDKLTNLTEL 162
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 7e-05
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 1384 DNDLQTLP-GRPSCPNLLT-LFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-- 1439
N LQ+LP G L L L N +L+ +P F+ +T+L LNL+ +++SLP+
Sbjct: 94 GNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV 152
Query: 1440 --TLVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLR 1495
L NL L + + L LP V L L+ L L ++K +P + +LTSL+
Sbjct: 153 FDKLTNLTELDL----SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208
Query: 1496 YLTVF 1500
Y+ +
Sbjct: 209 YIWLH 213
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ET 1440
N ++ +P L + L N ++ + P F+ + SL L L +I LP
Sbjct: 41 QNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
Query: 1441 LVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYLT 1498
L LQ+L+L + + + L + L L +L L +++ + K L +++ +
Sbjct: 100 FEGLFSLQLLLL-NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158
Query: 1499 VF 1500
+
Sbjct: 159 LA 160
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-T 1440
+N + L +L +L L N ++ +P S FE + SL++L L+ +I L
Sbjct: 65 NNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNANKINCLRVDA 123
Query: 1441 LVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRG 1478
+L L +L L D + L ++ + L
Sbjct: 124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 21/135 (15%)
Query: 1407 NC---RLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILILRDCDFLFVLP 1462
+C L IP + ++ + L + IK +P K L+ + L + + + L
Sbjct: 17 DCRGKGLTEIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELA 72
Query: 1463 PEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLRYLTVFFFGSMYKSEYIKLPPDLISS 1520
P+ L L L L G +I LPK + L SL+ L + ++ L
Sbjct: 73 PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL------LLNANKINCLRV----- 121
Query: 1521 DILSRLQALETLSID 1535
D L L LS+
Sbjct: 122 DAFQDLHNLNLLSLY 136
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 4e-07
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 1384 DNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLV 1442
D L +L P NL L+++ L+ + + L+ L + K+ ++ + P+
Sbjct: 18 DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH 77
Query: 1443 NLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRG 1478
L L L L L + L+ L L G
Sbjct: 78 FTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSG 112
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 9e-07
Identities = 30/154 (19%), Positives = 47/154 (30%), Gaps = 30/154 (19%)
Query: 1358 LLGARAGLTEPPSEEEWTHAKMIFFMDNDLQTLPG-RPSCPNLLTLFLQRNCRLRVIPPS 1416
L+ A T + E + + + + + N +R +
Sbjct: 8 LIEQAAQYTNAVRDRE------LDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKL--D 58
Query: 1417 FFELMTSLKVLNLSKTRIKSLPETLV-NLKCLQILILR--------DCDFLFVLPPEVGS 1467
F L+ LK L ++ RI + E L L L LIL D D L L
Sbjct: 59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK----- 113
Query: 1468 LECLEVLDLRGTEIKMLP----KEIGKLTSLRYL 1497
L L + + I K+ +R L
Sbjct: 114 --SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145
|
| >2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 5/109 (4%)
Query: 11 NDKKMYDVFLSFRGEDTRDNFTSHLYSAL--CQNNVETFI-DNDLKRGDEIPESLLGTIE 67
+ F+S+ D + L L ++ + ++ G I E+++ IE
Sbjct: 31 KRNVRFHAFISYSEHD-SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIE 89
Query: 68 ASTISIIIFSEKYASSKWCLDELLKILECKRNYGQI-VIPVFYRVDPSH 115
S SI + S + ++WC E + +I + P +
Sbjct: 90 KSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFY 138
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 6/108 (5%)
Query: 1395 SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRD 1454
+ L L N + I S M +L++L+L + IK + L+ L +
Sbjct: 46 TLKACKHLALSTN-NIEKI--SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102
Query: 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFF 1502
+ L + L L VL + +I EI KL +L L
Sbjct: 103 N-QIASLSG-IEKLVNLRVLYMSNNKITNW-GEIDKLAALDKLEDLLL 147
|
| >1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 9e-06
Identities = 24/120 (20%), Positives = 39/120 (32%), Gaps = 14/120 (11%)
Query: 14 KMYDVFLSFRGEDTR---------DNFTSHLYSALCQN--NVETFI-DNDLKRGDEIPES 61
K YD +LS+ D + F + + + + FI D DL E
Sbjct: 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIED 60
Query: 62 LLGTIEASTISIIIFSEKYA-SSKWCLDELLKIL-ECKRNYGQIVIPVFYRVDPSHVRKQ 119
+ ++ S II+ + Y W + EL L VI + + Q
Sbjct: 61 VARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRGIMNYQ 120
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 12/133 (9%)
Query: 1375 THAKMIFFMDNDLQTLPGRP--SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKT 1432
T+A++++ DN + L S NL L+L N +L +P F+ +T L VL+L
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN 98
Query: 1433 RIKSLPE----TLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEI 1488
++ LP LV+LK L + C+ L LP + L L L L ++K +P
Sbjct: 99 QLTVLPSAVFDRLVHLKELFM----CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGA 154
Query: 1489 -GKLTSLRYLTVF 1500
+L+SL + +F
Sbjct: 155 FDRLSSLTHAYLF 167
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 1351 IPEAYQFLLGARAGLTEPPSE-EEWTHAKMIFFMDNDLQTLPGR--PSCPNLLTLFLQRN 1407
IP L T P E + H +I +N + TL + + LLTL L N
Sbjct: 29 IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88
Query: 1408 CRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILILR----DCD 1456
RLR IPP F+ + SL++L+L I +PE +L L L + CD
Sbjct: 89 -RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 13/123 (10%)
Query: 1384 DNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-- 1439
L TL L L L N +L+ + F+ +T L L L+ ++ SLP
Sbjct: 44 STGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLPLGV 102
Query: 1440 --TLVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDLRGTEIKMLPKEI-GKLTSLR 1495
L L L + + L LP V L L+ L L +++ +P KLT+L+
Sbjct: 103 FDHLTQLDKLYL----GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 1496 YLT 1498
L+
Sbjct: 159 TLS 161
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Query: 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGRP--SCPNLLTLFLQRNCRLRVIPPSFFELM 1421
G T P+ + N L++LP +L L+L N +L+ +P F +
Sbjct: 18 GRTSVPTGIP-AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKL 75
Query: 1422 TSLKVLNLSKTRIKSLPE----TLVNLKCLQILILRDCDFLFVLPPEV-GSLECLEVLDL 1476
TSL LNLS +++SLP L LK L + + + L LP V L L+ L L
Sbjct: 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL----NTNQLQSLPDGVFDKLTQLKDLRL 131
Query: 1477 RGTEIKMLPKEI-GKLTSLRYLTVF 1500
++K +P + +LTSL+Y+ +
Sbjct: 132 YQNQLKSVPDGVFDRLTSLQYIWLH 156
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 1384 DNDLQTLPGR---PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE- 1439
DN+L + P+L+ L L+RN +L I P+ FE + ++ L L + +IK +
Sbjct: 38 DNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENKIKEISNK 96
Query: 1440 ---TLVNLKCL 1447
L LK L
Sbjct: 97 MFLGLHQLKTL 107
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1866 | |||
| 3ozi_A | 204 | L6TR; plant TIR domain, plant protein; 2.30A {Linu | 100.0 | |
| 3jrn_A | 176 | AT1G72930 protein; TIR domain arabidopsis thaliana | 100.0 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 100.0 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 100.0 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 99.98 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.98 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 99.96 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 99.94 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.94 | |
| 3h16_A | 154 | TIR protein; bacteria TIR domain, signaling protei | 99.93 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 99.92 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.87 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.86 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.85 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.85 | |
| 3ub2_A | 146 | TOLL/interleukin-1 receptor domain-containing ADA | 99.85 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.85 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.85 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.84 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.84 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.84 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.84 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.83 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.83 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.83 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.82 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.82 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.82 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.82 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.81 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.81 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.81 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.81 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.8 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.8 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.79 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.79 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.79 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.79 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.78 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.78 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.78 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.77 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.76 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.76 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.76 | |
| 2js7_A | 160 | Myeloid differentiation primary response protein M | 99.75 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.74 | |
| 1fyx_A | 149 | TOLL-like receptor 2; beta-alpha-beta fold, signal | 99.74 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.74 | |
| 1t3g_A | 159 | X-linked interleukin-1 receptor accessory protein- | 99.73 | |
| 2j67_A | 178 | TOLL like receptor 10; TIR, IL-1, TLR10, membrane, | 99.73 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.7 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.7 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.69 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.68 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.67 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.67 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.67 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.66 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.66 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.64 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.64 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.62 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.6 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.6 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.59 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.59 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.58 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.57 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.55 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.54 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.51 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.51 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.5 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.5 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.49 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.49 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.48 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.46 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.45 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.45 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.44 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.44 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.43 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.43 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.42 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.41 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.4 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.4 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.4 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.39 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.39 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.39 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.38 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.38 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.36 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.35 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.34 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.33 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.31 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.31 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.3 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.29 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.24 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.24 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.23 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.23 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.22 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 99.22 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.22 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.21 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.21 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 99.21 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 99.21 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 99.21 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.2 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.19 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.19 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.19 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.19 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.19 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.18 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.18 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.16 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 99.14 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.13 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.13 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.13 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.12 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.12 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.11 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.11 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.1 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 99.1 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.08 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.08 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 99.08 | |
| 3qfl_A | 115 | MLA10; coiled-coil, (CC) domain, NLRS, nucleotide- | 99.07 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.04 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.04 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.04 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.03 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.01 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 99.0 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.0 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.0 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 98.98 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.96 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 98.96 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 98.93 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.92 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 98.9 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.89 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.89 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.88 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.88 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.87 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 98.86 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.86 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.84 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.83 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 98.83 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 98.83 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.77 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.7 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 98.7 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 98.69 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.69 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.68 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.61 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 98.57 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 98.54 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 98.53 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.53 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.42 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.39 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.37 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 98.31 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 98.31 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 98.26 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.23 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 98.16 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 98.13 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.13 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.13 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 98.12 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 98.08 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 98.03 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.03 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 98.02 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.0 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 97.98 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 97.97 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 97.95 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 97.93 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 97.93 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 97.93 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 97.91 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 97.9 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 97.87 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 97.86 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.84 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 97.81 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 97.81 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 97.8 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 97.79 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 97.78 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.78 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.77 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 97.77 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 97.76 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 97.74 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 97.74 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 97.73 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 97.69 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.67 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.67 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 97.67 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.62 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.61 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.61 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 97.56 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 97.51 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.51 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 97.48 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 97.46 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 97.43 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 97.41 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.39 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 97.36 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.35 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 97.34 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.33 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 97.3 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.29 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 97.26 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 97.24 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 97.24 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 97.21 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 97.21 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.2 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.17 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.17 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 97.15 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 97.14 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.14 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.13 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.12 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.11 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 97.09 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.09 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 97.02 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 97.0 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 97.0 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 96.99 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 96.99 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 96.98 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.98 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 96.97 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 96.96 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 96.95 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 96.92 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 96.89 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 96.82 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.82 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.81 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 96.74 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.7 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 96.7 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 96.69 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 96.69 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 96.69 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.68 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 96.66 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 96.66 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 96.65 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.61 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 96.53 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 96.52 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 96.5 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 96.49 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 96.46 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 96.44 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.44 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 96.4 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 96.33 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.32 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.29 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 96.11 | |
| 1eiw_A | 111 | Hypothetical protein MTH538; CHEY-like fold, flavo | 96.09 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 96.08 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.06 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 96.05 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.01 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 95.98 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 95.96 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 95.68 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 95.67 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.6 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 95.55 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 95.52 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 95.52 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 95.46 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 95.44 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 95.28 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 95.23 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.14 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 95.12 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 95.11 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 94.99 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 94.87 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 94.84 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 94.82 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 94.64 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 94.64 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 94.63 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 94.54 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 94.53 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 94.51 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 94.33 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 94.27 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 94.25 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 94.2 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 93.89 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 93.66 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 93.58 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 93.55 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 93.46 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 93.19 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 93.18 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 93.14 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 92.94 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 92.92 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 92.9 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 92.87 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 92.82 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 92.65 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 92.51 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 92.5 | |
| 2ck3_D | 482 | ATP synthase subunit beta\, mitochondrial; hydrola | 92.47 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 92.42 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 92.24 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 92.17 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 92.14 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 92.06 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 92.06 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 91.98 | |
| 3hyn_A | 189 | Putative signal transduction protein; DUF1863 fami | 91.91 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 91.87 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 91.78 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 91.78 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 91.7 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 91.62 | |
| 1fx0_B | 498 | ATP synthase beta chain; latent ATPase, thermal st | 91.6 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 91.49 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 91.47 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 91.45 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 91.37 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 91.35 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 91.3 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 91.28 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 91.27 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 91.24 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 91.17 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 91.12 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 91.07 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 90.82 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 90.81 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 90.72 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 90.71 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 90.59 | |
| 1jr3_D | 343 | DNA polymerase III, delta subunit; processivity, p | 90.53 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 90.48 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 90.4 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 90.39 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 90.36 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 90.34 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 90.29 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 90.22 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 90.2 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 90.08 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 90.04 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 90.04 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 90.03 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 90.02 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 90.02 | |
| 1jr3_D | 343 | DNA polymerase III, delta subunit; processivity, p | 89.99 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 89.95 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 89.89 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 89.86 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 89.78 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 89.78 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 89.72 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 89.62 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 89.57 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 89.55 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 89.53 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 89.52 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 89.52 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 89.51 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 89.29 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 89.27 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 89.23 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 89.21 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 89.2 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 89.2 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 89.17 | |
| 3l0o_A | 427 | Transcription termination factor RHO; helicase, RH | 89.16 | |
| 3fwy_A | 314 | Light-independent protochlorophyllide reductase I | 89.11 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 89.03 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 89.01 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 88.88 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 88.76 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 88.67 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 88.61 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 88.59 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 88.57 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 88.54 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 88.54 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 88.53 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 88.53 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 88.49 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 88.43 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 88.42 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 88.35 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 88.29 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 88.29 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 88.25 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 88.17 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 88.16 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 88.08 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 88.07 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 88.06 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 88.02 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 87.98 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 87.89 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 87.88 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 87.78 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 87.76 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 87.68 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 87.64 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 87.59 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 87.53 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 87.32 | |
| 3vr4_D | 465 | V-type sodium ATPase subunit D; V-ATPase, rotary m | 87.31 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 87.3 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 87.26 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 87.19 | |
| 2c61_A | 469 | A-type ATP synthase non-catalytic subunit B; hydro | 87.17 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 87.17 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 87.17 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 87.15 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 87.14 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 87.13 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 87.1 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 87.09 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 87.09 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 86.97 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 86.96 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 86.9 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 86.9 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 86.88 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 86.84 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 86.83 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 86.82 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 86.81 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 86.75 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 86.69 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 86.67 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 86.65 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 86.6 | |
| 3gqb_B | 464 | V-type ATP synthase beta chain; A3B3, V-ATPase, AT | 86.55 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 86.53 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 86.52 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 86.45 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 86.44 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 86.43 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 86.37 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 86.37 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 86.36 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 86.35 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 86.35 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 86.34 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 86.26 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 86.21 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 86.18 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 86.11 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 86.09 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 86.03 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 86.02 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 85.94 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 85.85 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 85.78 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 85.76 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 85.69 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 85.68 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 85.68 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 85.61 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 85.6 |
| >3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=382.69 Aligned_cols=172 Identities=35% Similarity=0.661 Sum_probs=159.3
Q ss_pred CCCCCCCCccEEEccccccccCchHHHHHHHHhhCCCceEeeC-CCCCCCCCchhHHHHhhhcceEEEEeccCcccchhh
Q 000202 8 PPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDN-DLKRGDEIPESLLGTIEASTISIIIFSEKYASSKWC 86 (1866)
Q Consensus 8 ~~~~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c 86 (1866)
|++.+.++|||||||+|+|+|.+|++||+++|+++||++|+|+ ++++|+.|.++|.+||++||++|||||+||++|.||
T Consensus 28 s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WC 107 (204)
T 3ozi_A 28 SGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWC 107 (204)
T ss_dssp ------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHH
T ss_pred cCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHH
Confidence 4456789999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh-CCCEEEEEEEEecCCcccccccchhhhHHHHhhcch-hhhhhHHHHHHhhhccCCCcccccCccch
Q 000202 87 LDELLKILECKRN-YGQIVIPVFYRVDPSHVRKQIGSFGDSFFMLEERFP-YKMRNWRSALTEAADLSGFDSCVIRPESR 164 (1866)
Q Consensus 87 ~~El~~~~~~~~~-~~~~v~pvf~~v~p~~vr~~~g~~~~~~~~~~~~~~-~~~~~wr~al~~~a~~~g~~~~~~~~e~~ 164 (1866)
++||++|++|.++ ++++|+||||+|+|++||+|+|+||+||++|++++. +++++||.||++||+++||++.....+++
T Consensus 108 l~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~ 187 (204)
T 3ozi_A 108 LMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGA 187 (204)
T ss_dssp HHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECTTSCHHH
T ss_pred HHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCCCCCHHH
Confidence 9999999999865 689999999999999999999999999999999875 67999999999999999999999888899
Q ss_pred hhhhhHHHHhhcccc
Q 000202 165 LVADIANEVLERLDD 179 (1866)
Q Consensus 165 ~i~~i~~~v~~~l~~ 179 (1866)
+|++|+++|+++|+.
T Consensus 188 ~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 188 IADKVSADIWSHISK 202 (204)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999998763
|
| >3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-44 Score=373.91 Aligned_cols=169 Identities=42% Similarity=0.701 Sum_probs=143.8
Q ss_pred CCCCccEEEccccccccCchHHHHHHHHhhCCCceEeeC-CCCCCCCCchhHHHHhhhcceEEEEeccCcccchhhHHHH
Q 000202 12 DKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDN-DLKRGDEIPESLLGTIEASTISIIIFSEKYASSKWCLDEL 90 (1866)
Q Consensus 12 ~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~El 90 (1866)
..++|||||||+|+|+|++|++||+++|+++||++|+|+ ++++|+.|.++|.+||++|+++|||||+||++|+||++||
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL 84 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL 84 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence 458999999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEEEEEecCCcccccccchhhhHHHHhhcc-hhhhhhHHHHHHhhhccCCCcccccCccchhhhhh
Q 000202 91 LKILECKRNYGQIVIPVFYRVDPSHVRKQIGSFGDSFFMLEERF-PYKMRNWRSALTEAADLSGFDSCVIRPESRLVADI 169 (1866)
Q Consensus 91 ~~~~~~~~~~~~~v~pvf~~v~p~~vr~~~g~~~~~~~~~~~~~-~~~~~~wr~al~~~a~~~g~~~~~~~~e~~~i~~i 169 (1866)
++|++|.+.++++|+||||+|+|++||+|+|+||+||++|+++. .+++++||.||++||+++||++. .+|+++|++|
T Consensus 85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i~~I 162 (176)
T 3jrn_A 85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLVDKI 162 (176)
T ss_dssp HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC--SCHHHHHHHH
T ss_pred HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC--CCHHHHHHHH
Confidence 99999998899999999999999999999999999999999873 57899999999999999999994 5699999999
Q ss_pred HHHHhhccccccc
Q 000202 170 ANEVLERLDDTFQ 182 (1866)
Q Consensus 170 ~~~v~~~l~~~~~ 182 (1866)
|++|.++|+..+|
T Consensus 163 v~~v~~~l~~~~~ 175 (176)
T 3jrn_A 163 ANEISNKKTIYAT 175 (176)
T ss_dssp HHHHHTTCC----
T ss_pred HHHHHHHhcCCCC
Confidence 9999999987765
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-41 Score=436.48 Aligned_cols=303 Identities=11% Similarity=0.169 Sum_probs=244.5
Q ss_pred hhhHHHHHHHHHhcc---CCccEEEEEcCCCchHHHHHHHHhc--CcccccccceEEEEEecCCC--CHHHHHHHHHHHh
Q 000202 982 YTQRNVRKIFRYVND---VTASKIGVYGVGGIGKTAALKALIS--YPEVKVMFHVIIWVTVSRYW--NTRKIQKQVLRQL 1054 (1866)
Q Consensus 982 ~~~~~~~~i~~~l~~---~~~~vi~I~G~gGvGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l 1054 (1866)
||++++++|.++|.. ...++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ +...+++.|+.++
T Consensus 132 GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l 211 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLML 211 (549)
T ss_dssp CCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHH
Confidence 888999999999843 3578999999999999999999998 68889999999999999985 8999999999999
Q ss_pred ccCCC-------CccCHHHHHHHHHHHhCCC-cEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhhccCC-CC
Q 000202 1055 SLHCK-------DRETDAQVAEKLWQVLNGE-KFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVCRNMD-VN 1125 (1866)
Q Consensus 1055 ~~~~~-------~~~~~~~~~~~l~~~L~~k-r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~-~~ 1125 (1866)
+.... ...+..++...+++.|+++ ||||||||||+..++ .+. ..+||+||||||++.++..++ ..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~~~ 285 (549)
T 2a5y_B 212 KSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQTC 285 (549)
T ss_dssp TTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCSCE
T ss_pred hcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCCCC
Confidence 86521 2234567789999999996 999999999997754 111 127999999999999999876 44
Q ss_pred cEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHhhhCCCCcccccc
Q 000202 1126 MVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHASRKFSLPITIEEC 1205 (1866)
Q Consensus 1126 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~~ 1205 (1866)
.+|+|++|+.++||+||.++++....++++.+++++|+++|+|+||||+++|+.|+.+ . |+.+ +.+.... ...
T Consensus 286 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l--~~~ 358 (549)
T 2a5y_B 286 EFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKL--ESR 358 (549)
T ss_dssp EEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHH--HHH
T ss_pred eEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHh--hcc
Confidence 6899999999999999999988765557888999999999999999999999999764 2 4333 1111000 000
Q ss_pred chhhHHHHHHHhHhccCCcchhHHHH-----------hhcCCCCCccccHHHHHHHHHHc--Cccchhh--HhHHHhHHH
Q 000202 1206 CTEDLIELLKFSFDQLKDHDVKSCFL-----------HCSLFPEDREVSIVEFIDYCIQE--GIIVGTL--ANAHKRGHQ 1270 (1866)
Q Consensus 1206 ~~~~i~~~l~~Sy~~L~~~~lk~cfl-----------y~s~Fp~~~~i~~~~Li~~W~ae--G~i~~~~--~~~~~~~~~ 1270 (1866)
...++.+++.+||++||++ +|.||+ |||+||+++.|+ +++|+|+ ||+.... ...++.++
T Consensus 359 ~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~- 432 (549)
T 2a5y_B 359 GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD- 432 (549)
T ss_dssp CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-
T ss_pred cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-
Confidence 2345788899999999987 999999 999999999999 8899999 9997553 23566666
Q ss_pred HHHHHHHhhhhhcccc--cCcccchhHHHHHHHHH
Q 000202 1271 IVDVLVDASLLLINEV--HNSIRMPGLMKDLAFGI 1303 (1866)
Q Consensus 1271 ~~~~L~~~sll~~~~~--~~~~~mhdlv~dla~~i 1303 (1866)
++++|+++||++.... ...|+|||+||++|..+
T Consensus 433 ~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~ 467 (549)
T 2a5y_B 433 RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHV 467 (549)
T ss_dssp HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTT
T ss_pred HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHH
Confidence 9999999999997542 45799999999999876
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-36 Score=385.28 Aligned_cols=283 Identities=17% Similarity=0.189 Sum_probs=231.7
Q ss_pred chhhHHHHHHHHHhcc-CCccEEEEEcCCCchHHHHHHHHhcCcccccccce-EEEEEecCCCCHHHHHHHHHHHhccCC
Q 000202 981 NYTQRNVRKIFRYVND-VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHV-IIWVTVSRYWNTRKIQKQVLRQLSLHC 1058 (1866)
Q Consensus 981 ~~~~~~~~~i~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l~~~~ 1058 (1866)
+||++++++|.++|.+ ...++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|++.++...
T Consensus 131 VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~ 210 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcC
Confidence 6888999999988854 45789999999999999999999988888899986 999999999999888888887654211
Q ss_pred ---CC--------ccCHHHHHHHHHHHh---CCCcEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhhccCCC
Q 000202 1059 ---KD--------RETDAQVAEKLWQVL---NGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVCRNMDV 1124 (1866)
Q Consensus 1059 ---~~--------~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~ 1124 (1866)
.. ..+.+.+...+++.| .++|+||||||||+.++|+.+. +||+||||||++.++..+..
T Consensus 211 ~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~g 283 (1221)
T 1vt4_I 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLSA 283 (1221)
T ss_dssp SSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHHH
T ss_pred cccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcCC
Confidence 10 112345566777766 7899999999999998898762 68999999999999865443
Q ss_pred CcEEEec------CCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhhCCC-CHHHHHHHhhhCC
Q 000202 1125 NMVVKLE------TLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALAGER-NVSVWKHASRKFS 1197 (1866)
Q Consensus 1125 ~~~~~l~------~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~-~~~~w~~~~~~~~ 1197 (1866)
...|.|+ +|+.+|||+||.+..+.. . .++..+| |+|+||||+++|+.|+.+. +.++|+..
T Consensus 284 ~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~--~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~----- 350 (1221)
T 1vt4_I 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV----- 350 (1221)
T ss_dssp HSSCEEEECSSSSCCCHHHHHHHHHHHHCCC--T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-----
T ss_pred CeEEEecCccccCCcCHHHHHHHHHHHcCCC--H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-----
Confidence 3467777 999999999999985432 1 2223333 9999999999999999763 67788763
Q ss_pred CCccccccchhhHHHHHHHhHhccCCcch-hHHHHhhcCCCCCccccHHHHHHHHHHcCccchhhHhHHHhHHHHHHHHH
Q 000202 1198 LPITIEECCTEDLIELLKFSFDQLKDHDV-KSCFLHCSLFPEDREVSIVEFIDYCIQEGIIVGTLANAHKRGHQIVDVLV 1276 (1866)
Q Consensus 1198 ~~~~~~~~~~~~i~~~l~~Sy~~L~~~~l-k~cfly~s~Fp~~~~i~~~~Li~~W~aeG~i~~~~~~~~~~~~~~~~~L~ 1276 (1866)
....+..+|++||+.||++ . |+||+|||+||+++.|+++.++.+|+++|. +.+..++++|+
T Consensus 351 --------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe---------edAe~~L~eLv 412 (1221)
T 1vt4_I 351 --------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK---------SDVMVVVNKLH 412 (1221)
T ss_dssp --------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS---------HHHHHHHHHHH
T ss_pred --------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH---------HHHHHHHHHHH
Confidence 1357999999999999998 7 999999999999999999999999999982 35788999999
Q ss_pred HhhhhhcccccCcccchhHHHHHHH
Q 000202 1277 DASLLLINEVHNSIRMPGLMKDLAF 1301 (1866)
Q Consensus 1277 ~~sll~~~~~~~~~~mhdlv~dla~ 1301 (1866)
++||++..+....|+|||++++++.
T Consensus 413 dRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 413 KYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp TSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred hhCCEEEeCCCCEEEehHHHHHHhc
Confidence 9999998655678999999999763
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-32 Score=355.50 Aligned_cols=262 Identities=16% Similarity=0.196 Sum_probs=206.7
Q ss_pred eeehhhHHHHHHhhhcC-CCCcEEEEEEecCCCchhHHHHHHHH----hhhccccceEEEEeeccccccccHHHHHHHHH
Q 000202 189 IGVEWRIKEIESLLRTG-SAGVYKLGIWGIGGIGKTTIAGAVFN----KISRHFEGSYFACNVRAAEETGRLDDLRKELL 263 (1866)
Q Consensus 189 vGr~~~l~~l~~~L~~~-~~~~~~i~I~G~gGiGKTtLA~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 263 (1866)
|||+.++++|.++|..+ ..++++|+|+|||||||||||+++|+ ++..+|++++|+.+.+... .....++..++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAP--KSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCST--THHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCC--CCHHHHHHHHH
Confidence 49999999999999754 34689999999999999999999996 7889999999996554321 24577888888
Q ss_pred HHHhcccc---ccCccch----hHHHHHHHhhcC-cEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccchhccCc
Q 000202 264 SKLLNDRN---VKNFQNI----SVNFQSKRLARK-KVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCE 335 (1866)
Q Consensus 264 ~~~~~~~~---~~~~~~~----~~~~l~~~L~~k-~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~ 335 (1866)
.++..... ....... ....+++.|+++ ||||||||||+.+++ .+.. .+||+||||||++.++..++
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCC
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcC
Confidence 88875532 1111111 136788889996 999999999998876 3322 27999999999999998775
Q ss_pred -cceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecccccCCCHHHHHHHHH-HhccCCC
Q 000202 336 -VDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMR-KLEIVPH 413 (1866)
Q Consensus 336 -~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~~~~~w~~~l~-~l~~~~~ 413 (1866)
...+|+|++|+.+||++||.+++|.... .+.+.+++.+|+++|+|+||||+++|+.|+.++. +|...+. .+.....
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~ 360 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGL 360 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccH
Confidence 4578999999999999999999986543 4677889999999999999999999999988753 3333333 2333246
Q ss_pred chhhhhhhcccCCCChhhHHHHH-----------HHHHHhHHhhcccCCCCCCCeeeecchh--HHHHH
Q 000202 414 MEIQEVLKISYDSLDDSQKRMHD-----------LLRAMGREIVRKESIVDPGKRSRLWHDE--DIYEV 469 (1866)
Q Consensus 414 ~~i~~~l~~Sy~~L~~~~k~~~~-----------~l~~~~~~i~~~~~~~~~~~~~rlW~~e--~~~~~ 469 (1866)
.++..+|.+||+.||++.|.||. +|+ +||+++.++ +++|+++ |++..
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls-----~fp~~~~i~----i~~w~a~~~G~i~~ 420 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAV-----VMPPGVDIP----VKLWSCVIPVDICS 420 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGG-----SSCTTCCEE----HHHHHHHSCC----
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhhee-----eeCCCCeee----eeeeeeeccceecc
Confidence 67999999999999999999999 888 999888776 8899999 88864
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=9.7e-32 Score=389.56 Aligned_cols=304 Identities=20% Similarity=0.261 Sum_probs=244.1
Q ss_pred ccchhhHHHHHHHHHhc--cCCccEEEEEcCCCchHHHHHHHHhcCccc-cccc-ceEEEEEecCCCC--HHHHHHHHHH
Q 000202 979 AVNYTQRNVRKIFRYVN--DVTASKIGVYGVGGIGKTAALKALISYPEV-KVMF-HVIIWVTVSRYWN--TRKIQKQVLR 1052 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~~~~~i~~ 1052 (1866)
.|+||++++++|.+.|. +...++|+|+||||+||||||+++|+..+. ..+| +.++||++++..+ ....+..++.
T Consensus 125 ~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 204 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCM 204 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHH
T ss_pred eeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHH
Confidence 57899999999999983 456789999999999999999999877544 4444 6788999998543 3445667777
Q ss_pred HhccCCC----CccCHHHHHHHHHHHhCCC--cEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhhcc-CCCC
Q 000202 1053 QLSLHCK----DRETDAQVAEKLWQVLNGE--KFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVCRN-MDVN 1125 (1866)
Q Consensus 1053 ~l~~~~~----~~~~~~~~~~~l~~~L~~k--r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~-~~~~ 1125 (1866)
.+..... ...+.+++...++..|.++ |+||||||||+..+|+.+ .+||+||||||++.++.. +...
T Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~ 277 (1249)
T 3sfz_A 205 RLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPK 277 (1249)
T ss_dssp HHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCB
T ss_pred HhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCc
Confidence 7765432 2346778888999999887 999999999998888765 478999999999999854 4556
Q ss_pred cEEEecC-CChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHhhhCCCCc----
Q 000202 1126 MVVKLET-LSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHASRKFSLPI---- 1200 (1866)
Q Consensus 1126 ~~~~l~~-L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~~~~~~~~---- 1200 (1866)
..+.+++ |+.++|++||...++... ++..+.+++|+++|+|+||||+++|++|+.+. ..|+..++.+....
T Consensus 278 ~~~~~~~~l~~~~a~~l~~~~~~~~~--~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~ 353 (1249)
T 3sfz_A 278 HVVPVESGLGREKGLEILSLFVNMKK--EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRI 353 (1249)
T ss_dssp CCEECCSSCCHHHHHHHHHHHHTSCS--TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCS
T ss_pred eEEEecCCCCHHHHHHHHHHhhCCCh--hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhc
Confidence 7899996 999999999999885432 33456789999999999999999999998753 45777665442111
Q ss_pred -cccccchhhHHHHHHHhHhccCCcchhHHHHhhcCCCCCccccHHHHHHHHHHcCccchhhHhHHHhHHHHHHHHHHhh
Q 000202 1201 -TIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCSLFPEDREVSIVEFIDYCIQEGIIVGTLANAHKRGHQIVDVLVDAS 1279 (1866)
Q Consensus 1201 -~~~~~~~~~i~~~l~~Sy~~L~~~~lk~cfly~s~Fp~~~~i~~~~Li~~W~aeG~i~~~~~~~~~~~~~~~~~L~~~s 1279 (1866)
.......+.+..+|.+||+.||++ .|.||+|||+||+++.|++..++.+|.+++ +.++.++++|+++|
T Consensus 354 ~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~----------~~~~~~l~~L~~~s 422 (1249)
T 3sfz_A 354 RKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET----------EEVEDILQEFVNKS 422 (1249)
T ss_dssp SCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH----------HHHHHHHHHHHHTT
T ss_pred ccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH----------HHHHHHHHHHHhcc
Confidence 011112357999999999999998 899999999999999999999999997763 56788999999999
Q ss_pred hhhcccccC--cccchhHHHHHHHHHh
Q 000202 1280 LLLINEVHN--SIRMPGLMKDLAFGIL 1304 (1866)
Q Consensus 1280 ll~~~~~~~--~~~mhdlv~dla~~i~ 1304 (1866)
|++...... .|+||++||++++...
T Consensus 423 l~~~~~~~~~~~~~~h~l~~~~~~~~~ 449 (1249)
T 3sfz_A 423 LLFCNRNGKSFCYYLHDLQVDFLTEKN 449 (1249)
T ss_dssp SCEEEESSSSEEEECCHHHHHHHHHHT
T ss_pred ceEEecCCCceEEEecHHHHHHHHhhh
Confidence 998754332 5999999999998763
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=332.62 Aligned_cols=301 Identities=18% Similarity=0.250 Sum_probs=233.0
Q ss_pred ccchhhHHHHHHHHHhc--cCCccEEEEEcCCCchHHHHHHHHhcCccc-cccc-ceEEEEEecCCCCHHHHHHHH---H
Q 000202 979 AVNYTQRNVRKIFRYVN--DVTASKIGVYGVGGIGKTAALKALISYPEV-KVMF-HVIIWVTVSRYWNTRKIQKQV---L 1051 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~~i---~ 1051 (1866)
.++||+++++++.+.+. ....++|+|+||||+||||||+++|+...+ ...| +.++|++++.. +...+...+ +
T Consensus 125 ~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~ 203 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLC 203 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHH
T ss_pred eecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHH
Confidence 47889999999999986 345789999999999999999999887666 7789 58999999875 333444433 3
Q ss_pred HHhccC----CCCccCHHHHHHHHHHHhCC--CcEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhhccCCCC
Q 000202 1052 RQLSLH----CKDRETDAQVAEKLWQVLNG--EKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVCRNMDVN 1125 (1866)
Q Consensus 1052 ~~l~~~----~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~ 1125 (1866)
..++.. .....+.......++..+.+ +++||||||+|+...++.+ ..|++||||||+..++..+. .
T Consensus 204 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~-~ 275 (591)
T 1z6t_A 204 TRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM-G 275 (591)
T ss_dssp HHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC-S
T ss_pred HHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC-C
Confidence 444421 12334567777888888876 7899999999987766543 46899999999999887654 3
Q ss_pred cEEEe---cCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHhhhCCCCc--
Q 000202 1126 MVVKL---ETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHASRKFSLPI-- 1200 (1866)
Q Consensus 1126 ~~~~l---~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~~~~~~~~-- 1200 (1866)
..+++ ++|+.++|++||.+.++.. .+...+.+.+|+++|+|+||||..+|+.|+... ..|...++.+....
T Consensus 276 ~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~ 351 (591)
T 1z6t_A 276 PKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFK 351 (591)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCC
T ss_pred CceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHH
Confidence 45665 4899999999999988752 122345688999999999999999999998743 36877665432111
Q ss_pred ---cccccchhhHHHHHHHhHhccCCcchhHHHHhhcCCCCCccccHHHHHHHHHHcCccchhhHhHHHhHHHHHHHHHH
Q 000202 1201 ---TIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCSLFPEDREVSIVEFIDYCIQEGIIVGTLANAHKRGHQIVDVLVD 1277 (1866)
Q Consensus 1201 ---~~~~~~~~~i~~~l~~Sy~~L~~~~lk~cfly~s~Fp~~~~i~~~~Li~~W~aeG~i~~~~~~~~~~~~~~~~~L~~ 1277 (1866)
.........+..++..||+.||++ .|.||++||+||+|+.|+...++.+|.+++ +.+..+++.|++
T Consensus 352 ~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~----------~~~~~~l~~L~~ 420 (591)
T 1z6t_A 352 RIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET----------EEVEDILQEFVN 420 (591)
T ss_dssp CSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH----------HHHHHHHHHHHH
T ss_pred HhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH----------HHHHHHHHHHHh
Confidence 001112357999999999999998 899999999999999999999999996642 346789999999
Q ss_pred hhhhhcccc--cCcccchhHHHHHHHHH
Q 000202 1278 ASLLLINEV--HNSIRMPGLMKDLAFGI 1303 (1866)
Q Consensus 1278 ~sll~~~~~--~~~~~mhdlv~dla~~i 1303 (1866)
+||++.... ...|+||+++++++...
T Consensus 421 ~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 421 KSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp TTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred CcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 999986443 34799999999999765
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-28 Score=316.95 Aligned_cols=246 Identities=15% Similarity=0.152 Sum_probs=185.8
Q ss_pred CceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHH--hhhccccc-eEEEEeeccccccccHHHHHHHHH
Q 000202 187 DLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFN--KISRHFEG-SYFACNVRAAEETGRLDDLRKELL 263 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~--~~~~~f~~-~~~~~~~~~~~~~~~~~~l~~~ll 263 (1866)
..|||+.++++|.++|... +++++|+|+||||+||||||+++|+ +++.+|+. ++|+..... .....++..+.
T Consensus 129 ~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~----~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC----NSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCS----SSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCC----CCHHHHHHHHH
Confidence 4599999999999999853 2478999999999999999999997 57889997 556654433 22334444444
Q ss_pred HHHhccc---c-ccC----c-cc--hhHHHHHHHh---hcCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 264 SKLLNDR---N-VKN----F-QN--ISVNFQSKRL---ARKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 264 ~~~~~~~---~-~~~----~-~~--~~~~~l~~~L---~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
..+.... . ... . .. ...+.+++.| ++||+||||||||+.++|+.+. +||+||||||++.
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~ 276 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQ 276 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSH
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChH
Confidence 3322110 0 000 0 00 0123455544 6799999999999999998762 6899999999999
Q ss_pred hhccCccceeeecC------CCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecccccCC--CHHHH
Q 000202 330 VLTNCEVDHIYQMK------ELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGR--SKEEW 401 (1866)
Q Consensus 330 v~~~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~--~~~~w 401 (1866)
++..+....+|+|+ +|+.+||++||++.. +.. ..++..++ |+|+||||+++|+.|+++ +.++|
T Consensus 277 Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW 347 (1221)
T 1vt4_I 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNW 347 (1221)
T ss_dssp HHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHH
T ss_pred HHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 88654444567777 999999999999884 322 12233333 999999999999999977 77888
Q ss_pred HHHHHHhccCCCchhhhhhhcccCCCChhh-HHHHHHHHHHhHHhhcccCCCCCCCeeeecchhH
Q 000202 402 ESAMRKLEIVPHMEIQEVLKISYDSLDDSQ-KRMHDLLRAMGREIVRKESIVDPGKRSRLWHDED 465 (1866)
Q Consensus 402 ~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~-k~~~~~l~~~~~~i~~~~~~~~~~~~~rlW~~e~ 465 (1866)
+.. ....+..+|++||+.|++++ |.||.+|+ +||++..++...+.++|.+++
T Consensus 348 ~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LA-----IFPed~~I~~elLa~LW~aeG 400 (1221)
T 1vt4_I 348 KHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLS-----VFPPSAHIPTILLSLIWFDVI 400 (1221)
T ss_dssp HHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTT-----SSCTTSCEEHHHHHHHHCSSC
T ss_pred hcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHh-----CCCCCCCCCHHHHHHHhcCCC
Confidence 753 35679999999999999999 99999999 999998888788889998774
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-27 Score=345.90 Aligned_cols=268 Identities=19% Similarity=0.284 Sum_probs=208.0
Q ss_pred cccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHh---hhccccceEEEEeeccccccccHH
Q 000202 180 TFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNK---ISRHFEGSYFACNVRAAEETGRLD 256 (1866)
Q Consensus 180 ~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~ 256 (1866)
.+|..+..||||+.++++|.++|.....++++|+|+||||+||||||+++|++ ...+|...+||...... ......
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~ 196 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ-DKSGLL 196 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC-CHHHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc-CchHHH
Confidence 35566778999999999999999876677999999999999999999999986 45667766644443331 122233
Q ss_pred HHHHHHHHHHhccccccCccchh----HHHHHHHhhcC--cEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccch
Q 000202 257 DLRKELLSKLLNDRNVKNFQNIS----VNFQSKRLARK--KVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQV 330 (1866)
Q Consensus 257 ~l~~~ll~~~~~~~~~~~~~~~~----~~~l~~~L~~k--~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v 330 (1866)
..+..++..+............. .+.++..+.++ |+||||||||+..+|+.+ ++||+||||||++.+
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTT
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHH
Confidence 44555666655433211111111 24555556655 999999999998876654 679999999999999
Q ss_pred hcc-CccceeeecCC-CCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecccccCCCHHHHHHHHHHh
Q 000202 331 LTN-CEVDHIYQMKE-LVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKL 408 (1866)
Q Consensus 331 ~~~-~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~~~~~w~~~l~~l 408 (1866)
+.. .+....+++++ |+.+||++||...++.. .+.+.+.+.+|+++|+|+||||+++|++|+.++ .+|+.+++.+
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l 345 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQL 345 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHH
T ss_pred HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHH
Confidence 854 45667899996 99999999999988432 234456799999999999999999999998776 5799999888
Q ss_pred ccCCC-----------chhhhhhhcccCCCChhhHHHHHHHHHHhHHhhcccCCCCCCCeeeecchh
Q 000202 409 EIVPH-----------MEIQEVLKISYDSLDDSQKRMHDLLRAMGREIVRKESIVDPGKRSRLWHDE 464 (1866)
Q Consensus 409 ~~~~~-----------~~i~~~l~~Sy~~L~~~~k~~~~~l~~~~~~i~~~~~~~~~~~~~rlW~~e 464 (1866)
..... ..+..+|.+||+.|++++|.||.+|+ +||+++.++...++++|.++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~-----~f~~~~~i~~~~~~~~~~~~ 407 (1249)
T 3sfz_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLS-----ILQKDVKVPTKVLCVLWDLE 407 (1249)
T ss_dssp HSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGG-----GSCTTCCEEHHHHHHHHTCC
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhC-----ccCCCCeeCHHHHHHHhCCC
Confidence 65431 34889999999999999999999999 99999999999999999854
|
| >3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-27 Score=250.49 Aligned_cols=120 Identities=20% Similarity=0.363 Sum_probs=112.0
Q ss_pred CCCCCCccEEEccccccccCchHHHHHHHHhhCCCceEeeC-CCCCCCCCchhHHHHhhhcceEEEEeccCcccchhhHH
Q 000202 10 RNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDN-DLKRGDEIPESLLGTIEASTISIIIFSEKYASSKWCLD 88 (1866)
Q Consensus 10 ~~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~ 88 (1866)
.++.++|||||||+++| +++|+.||+.+|+++||+||+|+ ++.+|+.|.++|.+||++|+++|+|+|++|+.|.||++
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 45679999999999999 57899999999999999999999 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEEEEEecCCcccccccchhhhHHHH
Q 000202 89 ELLKILECKRNYGQIVIPVFYRVDPSHVRKQIGSFGDSFFML 130 (1866)
Q Consensus 89 El~~~~~~~~~~~~~v~pvf~~v~p~~vr~~~g~~~~~~~~~ 130 (1866)
||..|+++...++++|+||||+|+|++||+|.|.|+++|+.+
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~ 135 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFN 135 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEE
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhh
Confidence 999999988778889999999999999999999999988654
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-26 Score=300.06 Aligned_cols=266 Identities=21% Similarity=0.269 Sum_probs=196.8
Q ss_pred cccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhh---hcccc-ceEEEEeeccccccccH
Q 000202 180 TFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKI---SRHFE-GSYFACNVRAAEETGRL 255 (1866)
Q Consensus 180 ~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~---~~~f~-~~~~~~~~~~~~~~~~~ 255 (1866)
..|..+..||||+.++++|.++|...+.+.++|+|+||||+||||||.+++++. ...|+ +++|+..... + ....
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~-~~~~ 195 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-D-KSGL 195 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-C-HHHH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-c-hHHH
Confidence 345667789999999999999998655678999999999999999999999854 77896 5666654332 1 1111
Q ss_pred HHHHHHHHHHHhccccc--cCccc--hhHHHHHHHhhc--CcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 256 DDLRKELLSKLLNDRNV--KNFQN--ISVNFQSKRLAR--KKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 256 ~~l~~~ll~~~~~~~~~--~~~~~--~~~~~l~~~L~~--k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
...+..+...+...... ..... .....++..+.+ +++||||||||+..+++.+ ++|++||||||++.
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGG
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcH
Confidence 22222233333321110 11111 112455666665 7999999999998776543 67899999999998
Q ss_pred hhccCccceeeec---CCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecccccCCCHHHHHHHHH
Q 000202 330 VLTNCEVDHIYQM---KELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMR 406 (1866)
Q Consensus 330 v~~~~~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~~~~~w~~~l~ 406 (1866)
++..+. ...+++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|+.|+.+. .+|...++
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~ 343 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLK 343 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHH
Confidence 876543 334554 5899999999999988642 223346789999999999999999999998764 36988888
Q ss_pred HhccCC-----------CchhhhhhhcccCCCChhhHHHHHHHHHHhHHhhcccCCCCCCCeeeecchh
Q 000202 407 KLEIVP-----------HMEIQEVLKISYDSLDDSQKRMHDLLRAMGREIVRKESIVDPGKRSRLWHDE 464 (1866)
Q Consensus 407 ~l~~~~-----------~~~i~~~l~~Sy~~L~~~~k~~~~~l~~~~~~i~~~~~~~~~~~~~rlW~~e 464 (1866)
.+.... ...+..+|..||+.|++++|.|+.+++ +||++..++...+.++|..+
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la-----~f~~~~~i~~~~l~~l~~~~ 407 (591)
T 1z6t_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLS-----ILQKDVKVPTKVLCILWDME 407 (591)
T ss_dssp HHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGG-----GCCTTCCEEHHHHHHHHTCC
T ss_pred HHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHcc-----ccCCCCccCHHHHHHHhccC
Confidence 886432 236889999999999999999999999 99988877777788889755
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-21 Score=255.38 Aligned_cols=412 Identities=15% Similarity=0.094 Sum_probs=202.7
Q ss_pred ccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~ 1451 (1866)
++++.|++++|.+..++. +..+++|++|++++| .+..+++..|+++++|++|+|++|.+..+ |..++++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 456666666666665542 456666666666665 45555554456666666666666666655 55666666666666
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCC--cCChhhcCCCccceeccccccccC----------CC----ccccCCC
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIK--MLPKEIGKLTSLRYLTVFFFGSMY----------KS----EYIKLPP 1515 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~~~----------~~----~~~~l~~ 1515 (1866)
|++|.+.+..|..++++++|++|++++|.+. .+|..++++++|++|+++++.-.. .+ ....+..
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 6666655444456666666666666666665 356666666666666665421100 00 0111222
Q ss_pred CCCC---hhhhhccccCcEeecccCCCCC---------------------------c-----------------------
Q 000202 1516 DLIS---SDILSRLQALETLSIDVHPGDK---------------------------R----------------------- 1542 (1866)
Q Consensus 1516 ~~~~---~~~l~~L~~L~~L~l~~~~~~~---------------------------~----------------------- 1542 (1866)
+.+. ...+.. .+|+.|+++.+.... .
T Consensus 191 n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 191 NPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp CCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 2111 111111 134444444322100 0
Q ss_pred cccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccccccc-----------cccc
Q 000202 1543 WDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTD-----------YVQC 1611 (1866)
Q Consensus 1543 ~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-----------~~~~ 1611 (1866)
..+........+..+++|+.|+++.+.+..++ ......+|+.|.+..+ ....++.+-.. ....
T Consensus 270 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-----~l~~~~~L~~L~l~~n-~l~~lp~~~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-----DVPKHFKWQSLSIIRC-QLKQFPTLDLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-----CCCTTCCCSEEEEESC-CCSSCCCCCCSSCCEEEEESCSSCEE
T ss_pred ccccccccccccccCCCCCEEEecCccchhhh-----hccccccCCEEEcccc-cCcccccCCCCccceeeccCCcCccc
Confidence 00111111222455566666666665554433 1112334444444321 11222211000 0000
Q ss_pred cccCccceeEeecCC-----CCC--hHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCc
Q 000202 1612 DYNQHDRCLRFVNGK-----NVP--PEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEH 1684 (1866)
Q Consensus 1612 ~~~~~~~~L~~~~~~-----~~p--~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~ 1684 (1866)
........++.+... ..+ +..+..+..+..+.+..+ .+..++ ..+..+++|+.|++++|. +..+... .
T Consensus 344 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~--~ 418 (606)
T 3vq2_A 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMS-ANFMGLEELQHLDFQHST-LKRVTEF--S 418 (606)
T ss_dssp CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEEC-CCCTTCTTCCEEECTTSE-EESTTTT--T
T ss_pred hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccch-hhccCCCCCCeeECCCCc-cCCccCh--h
Confidence 000011112211111 110 112222222333333322 244444 345666777777777643 2222110 1
Q ss_pred ccccccccccccccccccccccccccccccccccccEEeEecCccCcc-ccchhhhhhccccceeeeccccccceecccC
Q 000202 1685 TTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEY-VFTCSMIQFLAKLEELTVEYCLAVKSIILDG 1763 (1866)
Q Consensus 1685 ~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~-l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~ 1763 (1866)
....+++|+.|+++++.-... . ....+.+++|+.|++++| +++. .++ ..+.++++|++|++++| .++.++.
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~-~--~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~-- 490 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKID-F--DGIFLGLTSLNTLKMAGN-SFKDNTLS-NVFANTTNLTFLDLSKC-QLEQISW-- 490 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEEC-C--TTTTTTCTTCCEEECTTC-EEGGGEEC-SCCTTCTTCCEEECTTS-CCCEECT--
T ss_pred hhhccccCCEEECcCCCCCcc-c--hhhhcCCCCCCEEECCCC-cCCCcchH-HhhccCCCCCEEECCCC-cCCccCh--
Confidence 234567777777776542111 1 111235678888888887 4443 222 34667788888888887 4555432
Q ss_pred ccccccccCCCCcCEEeccCCcccccc-c--cCCCCCccEEEEEcCccccccC
Q 000202 1764 EITYSSCIMLPSLKKLRLHHLPELANI-W--RNDWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1764 ~~~~~~~~~lp~L~~L~L~~c~~L~~i-~--~~~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
..+..+++|+.|+|++|+ +..+ + ...+++|+.|++++|. ++.+|
T Consensus 491 ----~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p 537 (606)
T 3vq2_A 491 ----GVFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFNR-IETSK 537 (606)
T ss_dssp ----TTTTTCTTCCEEECCSSC-CSCEEGGGTTTCTTCCEEECTTSC-CCCEE
T ss_pred ----hhhcccccCCEEECCCCc-CCCcCHHHccCCCcCCEEECCCCc-CcccC
Confidence 224578899999999885 4444 2 2468899999999885 66665
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.8e-21 Score=255.21 Aligned_cols=357 Identities=14% Similarity=0.158 Sum_probs=231.9
Q ss_pred CCCccccccCcEEEccCCCCCC------------------CCC-CC--CCCcccEEEccCCcCCcccChhHHhcCCCCcE
Q 000202 1368 PPSEEEWTHAKMIFFMDNDLQT------------------LPG-RP--SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKV 1426 (1866)
Q Consensus 1368 ~~~~~~~~~l~~l~l~~~~l~~------------------l~~-~~--~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~ 1426 (1866)
|+.+..+++|+.|++++|.+.. +|. +. .+++|+.|+|++|.....+|..+ +++++|++
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~ 519 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQS 519 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCE
Confidence 3447788999999999999998 885 44 79999999999998788888665 88999999
Q ss_pred EEccCCC-CCC--CChhhcCCC-------CCcEEecccccCcccCCc--cccCCCCCcEEEccCCCCCcCChhhcCCCcc
Q 000202 1427 LNLSKTR-IKS--LPETLVNLK-------CLQILILRDCDFLFVLPP--EVGSLECLEVLDLRGTEIKMLPKEIGKLTSL 1494 (1866)
Q Consensus 1427 L~Ls~~~-i~~--lp~~i~~L~-------~L~~L~L~~~~~~~~lP~--~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L 1494 (1866)
|+|++|. ++. +|..++++. +|++|+|++|.+. .+|. .++++++|++|++++|.++.+| .++++++|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcc
Confidence 9999998 874 898888776 9999999999976 8998 8999999999999999999999 89999999
Q ss_pred ceeccccccccCCCccccCCCCCCChhhhhcccc-CcEeecccCCCCCccccccccccccccCCC--CCCEEEeecCCcc
Q 000202 1495 RYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQA-LETLSIDVHPGDKRWDKDVKIVITEVSGLT--KLSSLSFHFPEIE 1571 (1866)
Q Consensus 1495 ~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~-L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~l~ 1571 (1866)
++|+++++.- ..+|. .+..+++ |+.|+++.+... .++..+..++ +|+.|+++.|.+.
T Consensus 598 ~~L~Ls~N~l------~~lp~------~l~~l~~~L~~L~Ls~N~L~--------~lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 598 TDLKLDYNQI------EEIPE------DFCAFTDQVEGLGFSHNKLK--------YIPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp SEEECCSSCC------SCCCT------TSCEECTTCCEEECCSSCCC--------SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred eEEECcCCcc------ccchH------HHhhccccCCEEECcCCCCC--------cCchhhhccccCCCCEEECcCCcCC
Confidence 9999976431 13333 2678888 999999865422 3455555554 4999999998875
Q ss_pred chHHhhccCc--cccCCcceeEEEEecccccccccccccccccccCccceeEeecCCCCChHHHHHHHhhcceecccccC
Q 000202 1572 CVAEFLKGSA--WNNQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLS 1649 (1866)
Q Consensus 1572 ~~~~~~~~~~--~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~ 1649 (1866)
.....+.... ....+|+.|. +....+..+|...
T Consensus 658 g~ip~l~~~l~~~~~~~L~~L~----------------------------Ls~N~L~~lp~~~----------------- 692 (876)
T 4ecn_A 658 SEGRNISCSMDDYKGINASTVT----------------------------LSYNEIQKFPTEL----------------- 692 (876)
T ss_dssp TTSSSCSSCTTTCCCCCEEEEE----------------------------CCSSCCCSCCHHH-----------------
T ss_pred CccccchhhhccccCCCcCEEE----------------------------ccCCcCCccCHHH-----------------
Confidence 4211100000 0111222221 2222233455443
Q ss_pred ceecCCCCcccccCCcEEEecccCCccEeccCCCcc----cccccccccccccccccccccccccccccccccccEEeEe
Q 000202 1650 IVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHT----TAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIH 1725 (1866)
Q Consensus 1650 l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~----~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~ 1725 (1866)
+..+++|+.|++++| .+..++...... ...+++|+.|+++++ +++.+.. .+....+++|+.|+++
T Consensus 693 --------~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~-~l~~~~l~~L~~L~Ls 761 (876)
T 4ecn_A 693 --------FATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSD-DFRATTLPYLSNMDVS 761 (876)
T ss_dssp --------HHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCG-GGSTTTCTTCCEEECC
T ss_pred --------HccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchH-HhhhccCCCcCEEEeC
Confidence 234567777777764 444444321100 112336777777664 3332111 1111146777777777
Q ss_pred cCccCccccchhhhhhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCccccccccCCCCCccEEEEEc
Q 000202 1726 ACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIWRNDWPSLEYISFYG 1805 (1866)
Q Consensus 1726 ~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~~~~lpsLe~L~I~~ 1805 (1866)
+| +++.+|. .+.++++|+.|+|++|+.+..-...+. ....+..+++|+.|+|++|. +..++...+++|+.|++++
T Consensus 762 ~N-~L~~lp~--~l~~L~~L~~L~Ls~N~~ls~N~l~~~-ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~~~L~~LdLs~ 836 (876)
T 4ecn_A 762 YN-CFSSFPT--QPLNSSQLKAFGIRHQRDAEGNRILRQ-WPTGITTCPSLIQLQIGSND-IRKVDEKLTPQLYILDIAD 836 (876)
T ss_dssp SS-CCSSCCC--GGGGCTTCCEEECCCCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSC-CCBCCSCCCSSSCEEECCS
T ss_pred CC-CCCccch--hhhcCCCCCEEECCCCCCccccccccc-ChHHHhcCCCCCEEECCCCC-CCccCHhhcCCCCEEECCC
Confidence 77 5555533 455677777777776431110000000 01224467777777777775 3666655567777777777
Q ss_pred Ccc
Q 000202 1806 CPK 1808 (1866)
Q Consensus 1806 Cp~ 1808 (1866)
||-
T Consensus 837 N~l 839 (876)
T 4ecn_A 837 NPN 839 (876)
T ss_dssp CTT
T ss_pred CCC
Confidence 764
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-21 Score=256.85 Aligned_cols=138 Identities=11% Similarity=0.043 Sum_probs=87.2
Q ss_pred cccccCCcEEEecccCCccEeccCCCcc----cccccccccccccccccccccccccccccccccccEEeEecCccCccc
Q 000202 1658 VGYMSGLKFCIISECLKIKTVVDTKEHT----TAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYV 1733 (1866)
Q Consensus 1658 l~~l~~L~~L~l~~c~~l~~i~~~~~~~----~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l 1733 (1866)
+..+++|++|++++| .+..++...... ...+++|+.|+++++. ++.+.. .+....+++|+.|++++| +++.+
T Consensus 453 ~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~-~~~~~~l~~L~~L~Ls~N-~l~~i 528 (636)
T 4eco_A 453 FSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSD-DFRATTLPYLVGIDLSYN-SFSKF 528 (636)
T ss_dssp HHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCG-GGSTTTCTTCCEEECCSS-CCSSC
T ss_pred HccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCc-CCccCh-hhhhccCCCcCEEECCCC-CCCCc
Confidence 345788888888885 455554432100 0112388888887652 332211 111125788999999888 66665
Q ss_pred cchhhhhhccccceeeeccccc------cceecccCccccccccCCCCcCEEeccCCccccccccCCCCCccEEEEEcCc
Q 000202 1734 FTCSMIQFLAKLEELTVEYCLA------VKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIWRNDWPSLEYISFYGCP 1807 (1866)
Q Consensus 1734 ~~~~~l~~L~sLe~L~I~~C~~------L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~~~~lpsLe~L~I~~Cp 1807 (1866)
|. .+.++++|++|++++|.. ...++ ..+..+++|+.|+|++|. +..++...+++|+.|++++||
T Consensus 529 p~--~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p-------~~l~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 529 PT--QPLNSSTLKGFGIRNQRDAQGNRTLREWP-------EGITLCPSLTQLQIGSND-IRKVNEKITPNISVLDIKDNP 598 (636)
T ss_dssp CC--GGGGCSSCCEEECCSCBCTTCCBCCCCCC-------TTGGGCSSCCEEECCSSC-CCBCCSCCCTTCCEEECCSCT
T ss_pred Ch--hhhcCCCCCEEECCCCcccccCcccccCh-------HHHhcCCCCCEEECCCCc-CCccCHhHhCcCCEEECcCCC
Confidence 43 456788999999976542 22222 234578889999998887 477766666889999999886
Q ss_pred cc
Q 000202 1808 KL 1809 (1866)
Q Consensus 1808 ~L 1809 (1866)
-.
T Consensus 599 l~ 600 (636)
T 4eco_A 599 NI 600 (636)
T ss_dssp TC
T ss_pred Cc
Confidence 44
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=250.98 Aligned_cols=407 Identities=18% Similarity=0.135 Sum_probs=246.9
Q ss_pred CCccccccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCC
Q 000202 1369 PSEEEWTHAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLK 1445 (1866)
Q Consensus 1369 ~~~~~~~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~ 1445 (1866)
..+..+++|++|++++|.+..++ .+..+++|++|+|++| .+..+++..++.+++|++|+|++|.++.+ |..+++++
T Consensus 51 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence 34667888888888888887653 3678888888888877 45555555567888888888888888876 56788888
Q ss_pred CCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcC-ChhhcCCCccc--eeccccccccC----------------
Q 000202 1446 CLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLR--YLTVFFFGSMY---------------- 1506 (1866)
Q Consensus 1446 ~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~--~L~l~~~~~~~---------------- 1506 (1866)
+|++|+|++|.+.+.-+..+..+++|++|++++|.++.+ |..++.+++|+ .|++.++.-..
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l 209 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence 888888888886653323444488888888888888866 45577888887 55554421000
Q ss_pred ---------------------------------------------CCccccCCCCC---CChhhhhccccCcEeecccCC
Q 000202 1507 ---------------------------------------------KSEYIKLPPDL---ISSDILSRLQALETLSIDVHP 1538 (1866)
Q Consensus 1507 ---------------------------------------------~~~~~~l~~~~---~~~~~l~~L~~L~~L~l~~~~ 1538 (1866)
.+..+.+..+. ++...+..+++|+.|+++.+.
T Consensus 210 ~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp TTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred CCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 00011111111 122335667777777777432
Q ss_pred CCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccccccccccccccCccc
Q 000202 1539 GDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDR 1618 (1866)
Q Consensus 1539 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1618 (1866)
...++..+..+++|+.|+++.|.+..+.. ......++|+.|.+....-...++.. ..........+
T Consensus 290 --------l~~lp~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~L 355 (606)
T 3t6q_A 290 --------LSELPSGLVGLSTLKKLVLSANKFENLCQ---ISASNFPSLTHLSIKGNTKRLELGTG---CLENLENLREL 355 (606)
T ss_dssp --------CSCCCSSCCSCTTCCEEECTTCCCSBGGG---GCGGGCTTCSEEECCSCSSCCBCCSS---TTTTCTTCCEE
T ss_pred --------cCCCChhhcccccCCEEECccCCcCcCch---hhhhccCcCCEEECCCCCcccccchh---hhhccCcCCEE
Confidence 23456677888888888888888765532 11223456666665422111011110 00001111112
Q ss_pred eeEeecCCCCC--hHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCccccccccccccc
Q 000202 1619 CLRFVNGKNVP--PEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLT 1696 (1866)
Q Consensus 1619 ~L~~~~~~~~p--~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~ 1696 (1866)
.+........+ +..+..+..+..+.+..+ .+..+....++.+++|+.|++++|. +...... .....+++|+.|+
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~--~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTR-LKVKDAQ--SPFQNLHLLKVLN 431 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCC-EECCTTC--CTTTTCTTCCEEE
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCc-CCCcccc--hhhhCcccCCEEE
Confidence 22222222111 111222333444444433 4555555567889999999999864 3332211 1245688999999
Q ss_pred ccccccccccccccccccccccccEEeEecCccCccc--cchhhhhhccccceeeeccccccceecccCccccccccCCC
Q 000202 1697 LNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYV--FTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLP 1774 (1866)
Q Consensus 1697 l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l--~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp 1774 (1866)
++++.- .... ....+.+++|+.|++++|+ ++.. +....+..+++|++|++++| .++.++.. .+..++
T Consensus 432 l~~n~l-~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~------~~~~l~ 500 (606)
T 3t6q_A 432 LSHSLL-DISS--EQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQH------AFTSLK 500 (606)
T ss_dssp CTTCCC-BTTC--TTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTT------TTTTCT
T ss_pred CCCCcc-CCcC--HHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCC-ccCccChh------hhcccc
Confidence 987632 2111 1112458999999999994 4431 22245788999999999998 56555422 255789
Q ss_pred CcCEEeccCCccccccc---cCCCCCccEEEEEcCc
Q 000202 1775 SLKKLRLHHLPELANIW---RNDWPSLEYISFYGCP 1807 (1866)
Q Consensus 1775 ~L~~L~L~~c~~L~~i~---~~~lpsLe~L~I~~Cp 1807 (1866)
+|+.|+|+++. +..+. ...+++| +|++++|.
T Consensus 501 ~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 501 MMNHVDLSHNR-LTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp TCCEEECCSSC-CCGGGGGGGTTCCSC-EEECCSSC
T ss_pred CCCEEECCCCc-cCcCChhHhCccccc-EEECcCCc
Confidence 99999999985 44442 2367888 89998873
|
| >3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-22 Score=209.70 Aligned_cols=134 Identities=17% Similarity=0.224 Sum_probs=92.0
Q ss_pred CCCCCCccEEEccccccccCchHHHHHHHHhh--CCCceEeeC-CCCCCCCCchhHHHHhhhcceEEEEeccCcccchhh
Q 000202 10 RNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQ--NNVETFIDN-DLKRGDEIPESLLGTIEASTISIIIFSEKYASSKWC 86 (1866)
Q Consensus 10 ~~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~--~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c 86 (1866)
....+.|||||||+++|+ .||.||+++|++ .|+++|+|+ |+.+|+.|.++|.+||++||++|+|+|+||++|.||
T Consensus 5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 345689999999999995 589999999998 599999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEEEEEecCCcccccccchh-hhHHHHhhcc---hhhhhhHHHHH
Q 000202 87 LDELLKILECKRNYGQIVIPVFYRVDPSHVRKQIGSFG-DSFFMLEERF---PYKMRNWRSAL 145 (1866)
Q Consensus 87 ~~El~~~~~~~~~~~~~v~pvf~~v~p~~vr~~~g~~~-~~~~~~~~~~---~~~~~~wr~al 145 (1866)
..|+..|+.+......+||||||+|+++++......+- --+..++..| .+.|.+|++|+
T Consensus 83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHHHHHHHHHHHhc
Confidence 99999999987333447889999999766543322110 0011223333 35577787654
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.2e-21 Score=248.70 Aligned_cols=126 Identities=24% Similarity=0.285 Sum_probs=74.5
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~ 1451 (1866)
++++.|++++|.+..++ .+..+++|++|++++| .+..+++..|+.+++|++|+|++|.+..+|.. ++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 45666666666665443 3456666666666655 44455544445666666666666666655543 66666666666
Q ss_pred cccccCcc-cCCccccCCCCCcEEEccCCC-CCcCC-hhhcCCCccceecccc
Q 000202 1452 LRDCDFLF-VLPPEVGSLECLEVLDLRGTE-IKMLP-KEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1452 L~~~~~~~-~lP~~i~~L~~L~~L~l~~~~-i~~lp-~~i~~L~~L~~L~l~~ 1501 (1866)
|++|.+.+ ..|..++++++|++|++++|. +..+| ..++++++|++|++.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence 66666443 345556666666666666665 44554 3466666666666654
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-20 Score=244.84 Aligned_cols=137 Identities=20% Similarity=0.114 Sum_probs=74.6
Q ss_pred cccccCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchh
Q 000202 1658 VGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCS 1737 (1866)
Q Consensus 1658 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~ 1737 (1866)
+..+++|++|++++|. +..++.. ...+++|+.|++.++.- ..... ......+++|+.|++++| .++..++ .
T Consensus 369 ~~~~~~L~~L~l~~n~-l~~~~~~----~~~l~~L~~L~l~~n~l-~~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~ 439 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNG-VITMSSN----FLGLEQLEHLDFQHSNL-KQMSE-FSVFLSLRNLIYLDISHT-HTRVAFN-G 439 (570)
T ss_dssp HHTCSCCCEEECCSCS-EEEEEEE----EETCTTCCEEECTTSEE-ESCTT-SCTTTTCTTCCEEECTTS-CCEECCT-T
T ss_pred ccccCccCEEECCCCc-ccccccc----ccccCCCCEEEccCCcc-ccccc-hhhhhcCCCCCEEeCcCC-cccccch-h
Confidence 4556777777777753 3333321 24467777777766432 11100 011235677777777777 3444333 3
Q ss_pred hhhhccccceeeecccccc-ceecccCccccccccCCCCcCEEeccCCcccccc-c--cCCCCCccEEEEEcCcccccc
Q 000202 1738 MIQFLAKLEELTVEYCLAV-KSIILDGEITYSSCIMLPSLKKLRLHHLPELANI-W--RNDWPSLEYISFYGCPKLKKM 1812 (1866)
Q Consensus 1738 ~l~~L~sLe~L~I~~C~~L-~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i-~--~~~lpsLe~L~I~~Cp~L~~l 1812 (1866)
.+.++++|++|++++|.-. ..++ ..+..+++|+.|+|++|. +..+ + ...+++|++|++++| +++.+
T Consensus 440 ~~~~l~~L~~L~l~~n~l~~~~~p-------~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~ 509 (570)
T 2z63_A 440 IFNGLSSLEVLKMAGNSFQENFLP-------DIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSV 509 (570)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEEC-------SCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred hhhcCCcCcEEECcCCcCccccch-------hhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-cCCCC
Confidence 4566777777777777422 1232 123456777777777664 3333 1 235667777777766 34443
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.8e-20 Score=234.46 Aligned_cols=344 Identities=20% Similarity=0.197 Sum_probs=245.5
Q ss_pred cccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEe
Q 000202 1372 EEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILI 1451 (1866)
Q Consensus 1372 ~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~ 1451 (1866)
..+++++.|++.++.+..+|.+..+++|++|++++| .+..+|+ +..+++|++|++++|.+..+|. ++++++|++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 457889999999999999998889999999999988 5677776 5889999999999999998887 99999999999
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcE
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALET 1531 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~ 1531 (1866)
|++|.+. .+|. ++++++|++|++++|.+..+| .++++++|++|++... .. . ...+..+++|+.
T Consensus 119 L~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~--~~-----~-------~~~~~~l~~L~~ 181 (466)
T 1o6v_A 119 LFNNQIT-DIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ--VT-----D-------LKPLANLTTLER 181 (466)
T ss_dssp CCSSCCC-CCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES--CC-----C-------CGGGTTCTTCCE
T ss_pred CCCCCCC-CChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc--cc-----C-------chhhccCCCCCE
Confidence 9999854 4554 899999999999999999887 4899999999988421 11 1 112678899999
Q ss_pred eecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccccccccccc
Q 000202 1532 LSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYVQC 1611 (1866)
Q Consensus 1532 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 1611 (1866)
|+++.+.... ...+..+++|+.|+++.|.+..... ....++|+.|.+.. ..+..+..
T Consensus 182 L~l~~n~l~~---------~~~l~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~-n~l~~~~~-------- 238 (466)
T 1o6v_A 182 LDISSNKVSD---------ISVLAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNG-NQLKDIGT-------- 238 (466)
T ss_dssp EECCSSCCCC---------CGGGGGCTTCSEEECCSSCCCCCGG-----GGGCTTCCEEECCS-SCCCCCGG--------
T ss_pred EECcCCcCCC---------ChhhccCCCCCEEEecCCccccccc-----ccccCCCCEEECCC-CCcccchh--------
Confidence 9998654221 2347788999999999888776543 12245566666531 11111100
Q ss_pred cccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCcccccccc
Q 000202 1612 DYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPS 1691 (1866)
Q Consensus 1612 ~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~ 1691 (1866)
..... .+..+.+..+ .+..++. +..+++|+.|++++| .+..+.. ...+++
T Consensus 239 --l~~l~-------------------~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-----~~~l~~ 288 (466)
T 1o6v_A 239 --LASLT-------------------NLTDLDLANN-QISNLAP--LSGLTKLTELKLGAN-QISNISP-----LAGLTA 288 (466)
T ss_dssp --GGGCT-------------------TCSEEECCSS-CCCCCGG--GTTCTTCSEEECCSS-CCCCCGG-----GTTCTT
T ss_pred --hhcCC-------------------CCCEEECCCC-ccccchh--hhcCCCCCEEECCCC-ccCcccc-----ccCCCc
Confidence 00001 1112222211 1222222 567889999999886 4444432 346889
Q ss_pred cccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccCcccccccc
Q 000202 1692 LENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCI 1771 (1866)
Q Consensus 1692 L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~ 1771 (1866)
|+.|+++++. ++. ..+.+.+++|+.|++++| +++..++ +..+++|++|++++| .+..++ .+.
T Consensus 289 L~~L~L~~n~-l~~----~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~--------~l~ 350 (466)
T 1o6v_A 289 LTNLELNENQ-LED----ISPISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDVS--------SLA 350 (466)
T ss_dssp CSEEECCSSC-CSC----CGGGGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCCG--------GGT
T ss_pred cCeEEcCCCc-ccC----chhhcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCch--------hhc
Confidence 9999998753 332 223457899999999999 6777654 567899999999998 455442 245
Q ss_pred CCCCcCEEeccCCccccccccCCCCCccEEEEEcCc
Q 000202 1772 MLPSLKKLRLHHLPELANIWRNDWPSLEYISFYGCP 1807 (1866)
Q Consensus 1772 ~lp~L~~L~L~~c~~L~~i~~~~lpsLe~L~I~~Cp 1807 (1866)
.+++|+.|++++|+--...+...+++|+.|++++|+
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 351 NLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp TCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred cCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCc
Confidence 789999999999874333345688999999999885
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.5e-20 Score=252.61 Aligned_cols=137 Identities=25% Similarity=0.301 Sum_probs=118.7
Q ss_pred CCCCCCCccccccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-Chh
Q 000202 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PET 1440 (1866)
Q Consensus 1364 ~~~~~~~~~~~~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~ 1440 (1866)
.++..|. ..++++.|++++|.+..++ .+..+++|++|+|++|.....+++..|+++++|++|+|++|.+..+ |..
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 3444454 4578999999999998764 5789999999999999888888777779999999999999999966 789
Q ss_pred hcCCCCCcEEecccccCcccCCcc--ccCCCCCcEEEccCCCCCcC--ChhhcCCCccceeccccc
Q 000202 1441 LVNLKCLQILILRDCDFLFVLPPE--VGSLECLEVLDLRGTEIKML--PKEIGKLTSLRYLTVFFF 1502 (1866)
Q Consensus 1441 i~~L~~L~~L~L~~~~~~~~lP~~--i~~L~~L~~L~l~~~~i~~l--p~~i~~L~~L~~L~l~~~ 1502 (1866)
++++++|++|+|++|.+.+..|.. +++|++|++|++++|.++.+ +..++++++|++|+++++
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 999999999999999988777766 99999999999999999876 357999999999999763
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=253.79 Aligned_cols=339 Identities=17% Similarity=0.158 Sum_probs=218.2
Q ss_pred CcccChhHHhcCCCCcEEEccCCCCCC------------------CChhhc--CCCCCcEEecccccCcccCCccccCCC
Q 000202 1410 LRVIPPSFFELMTSLKVLNLSKTRIKS------------------LPETLV--NLKCLQILILRDCDFLFVLPPEVGSLE 1469 (1866)
Q Consensus 1410 l~~~p~~~~~~l~~L~~L~Ls~~~i~~------------------lp~~i~--~L~~L~~L~L~~~~~~~~lP~~i~~L~ 1469 (1866)
+..+|..+ +++++|++|+|++|.++. +|..++ +|++|++|+|++|.+.+.+|..+++|+
T Consensus 437 L~~IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~ 515 (876)
T 4ecn_A 437 ITFISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515 (876)
T ss_dssp EEEECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred ccchhHHH-hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC
Confidence 34477765 778999999999998887 888887 899999999999988888998899999
Q ss_pred CCcEEEccCCC-CCc--CChhhcCCC-------ccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCC
Q 000202 1470 CLEVLDLRGTE-IKM--LPKEIGKLT-------SLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPG 1539 (1866)
Q Consensus 1470 ~L~~L~l~~~~-i~~--lp~~i~~L~-------~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~ 1539 (1866)
+|++|++++|. ++. +|..+++++ +|++|+++++.- ..+|. ...+.++++|+.|+++.+.
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L------~~ip~----~~~l~~L~~L~~L~Ls~N~- 584 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL------EEFPA----SASLQKMVKLGLLDCVHNK- 584 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC------CBCCC----HHHHTTCTTCCEEECTTSC-
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC------CccCC----hhhhhcCCCCCEEECCCCC-
Confidence 99999999997 774 888777766 888888865421 12221 1247788888888888543
Q ss_pred CCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCC-cceeEEEEecccccccccccccccccccCccc
Q 000202 1540 DKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQ-LTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDR 1618 (1866)
Q Consensus 1540 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1618 (1866)
...++ .+..+++|+.|+++.|.+..++.. .....+ |+.|.+.. ..+..++.+.. . ....
T Consensus 585 -------l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~----l~~l~~~L~~L~Ls~-N~L~~lp~~~~----~---~~~~ 644 (876)
T 4ecn_A 585 -------VRHLE-AFGTNVKLTDLKLDYNQIEEIPED----FCAFTDQVEGLGFSH-NKLKYIPNIFN----A---KSVY 644 (876)
T ss_dssp -------CCBCC-CCCTTSEESEEECCSSCCSCCCTT----SCEECTTCCEEECCS-SCCCSCCSCCC----T---TCSS
T ss_pred -------cccch-hhcCCCcceEEECcCCccccchHH----HhhccccCCEEECcC-CCCCcCchhhh----c---cccC
Confidence 22344 778888889999988887754432 223344 66666542 22222222110 0 0011
Q ss_pred eeEeecCCCCChHHHHHHHhhcceecccccCceecC-CCCcccccCCcEEEecccCCccEeccCCCcccccccccccccc
Q 000202 1619 CLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLS-DFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTL 1697 (1866)
Q Consensus 1619 ~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~-~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l 1697 (1866)
.|+.+......- .. .+..++ ....-.+++|+.|++++| .+..++.. ....+++|+.|++
T Consensus 645 ~L~~L~Ls~N~l--------------~g--~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~---~~~~l~~L~~L~L 704 (876)
T 4ecn_A 645 VMGSVDFSYNKI--------------GS--EGRNISCSMDDYKGINASTVTLSYN-EIQKFPTE---LFATGSPISTIIL 704 (876)
T ss_dssp CEEEEECCSSCT--------------TT--TSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHH---HHHTTCCCSEEEC
T ss_pred CCCEEECcCCcC--------------CC--ccccchhhhccccCCCcCEEEccCC-cCCccCHH---HHccCCCCCEEEC
Confidence 122222211100 00 000111 001123468999999985 45555432 2235789999999
Q ss_pred ccccccccccccccc-----ccccccccEEeEecCccCccccchhhhh--hccccceeeeccccccceecccCccccccc
Q 000202 1698 NHLWDLTCIWQGILP-----EGSFAELRILSIHACRHLEYVFTCSMIQ--FLAKLEELTVEYCLAVKSIILDGEITYSSC 1770 (1866)
Q Consensus 1698 ~~~~~L~~~~~~~~~-----~~~~p~L~~L~I~~C~~L~~l~~~~~l~--~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~ 1770 (1866)
+++ .++.+....+. ...+++|+.|++++| +|+.++. .+. .+++|+.|+|++| .+..++ ..+
T Consensus 705 s~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~--~l~~~~l~~L~~L~Ls~N-~L~~lp-------~~l 772 (876)
T 4ecn_A 705 SNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSD--DFRATTLPYLSNMDVSYN-CFSSFP-------TQP 772 (876)
T ss_dssp CSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCG--GGSTTTCTTCCEEECCSS-CCSSCC-------CGG
T ss_pred CCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchH--HhhhccCCCcCEEEeCCC-CCCccc-------hhh
Confidence 875 33322211111 112349999999999 7887754 343 8999999999998 455553 224
Q ss_pred cCCCCcCEEeccCCcc------cccccc--CCCCCccEEEEEcCccccccC
Q 000202 1771 IMLPSLKKLRLHHLPE------LANIWR--NDWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1771 ~~lp~L~~L~L~~c~~------L~~i~~--~~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
..+++|+.|+|++++. ...++. ..+++|+.|++++|.- ..+|
T Consensus 773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip 822 (876)
T 4ecn_A 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD 822 (876)
T ss_dssp GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccC
Confidence 5889999999987542 223322 3689999999999965 7776
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.5e-20 Score=246.02 Aligned_cols=130 Identities=24% Similarity=0.196 Sum_probs=91.1
Q ss_pred ccccccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCC
Q 000202 1371 EEEWTHAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCL 1447 (1866)
Q Consensus 1371 ~~~~~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L 1447 (1866)
+..+++|+.|++++|.+..++. +..+++|++|+|++| .+..+|+..|+.+++|++|+|++|.+..+| ..++++++|
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 5667777777777777766542 356777777777766 566677665677777777777777777665 467777777
Q ss_pred cEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChh-h--cCCCccceecccc
Q 000202 1448 QILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-I--GKLTSLRYLTVFF 1501 (1866)
Q Consensus 1448 ~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i--~~L~~L~~L~l~~ 1501 (1866)
++|+|++|.+.+..|..++++++|++|++++|.++.++.. + ..+++|++|++++
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 7777777776666666777777777777777777766543 2 3456777777654
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-20 Score=245.98 Aligned_cols=405 Identities=17% Similarity=0.102 Sum_probs=234.4
Q ss_pred CccccccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCC
Q 000202 1370 SEEEWTHAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKC 1446 (1866)
Q Consensus 1370 ~~~~~~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~ 1446 (1866)
.+..+++|+.|++++|.+..++ .+..+++|++|+|++| .+..+++..++++++|++|+|++|.+..+| ..++++++
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence 4566777888888888777664 3567788888888777 455554444577888888888888877666 66778888
Q ss_pred CcEEecccccCcc-cCCccccCCCCCcEEEccCCCCCcCC-hhhcCCCc---------------------------ccee
Q 000202 1447 LQILILRDCDFLF-VLPPEVGSLECLEVLDLRGTEIKMLP-KEIGKLTS---------------------------LRYL 1497 (1866)
Q Consensus 1447 L~~L~L~~~~~~~-~lP~~i~~L~~L~~L~l~~~~i~~lp-~~i~~L~~---------------------------L~~L 1497 (1866)
|++|+|++|.+.+ .+|..++++++|++|++++|.++.++ ..++.+++ |+.|
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L 209 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL 209 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeee
Confidence 8888888887654 56777888888888888887777553 33444443 3344
Q ss_pred ccccccc-----------cCCCccccC---------------------------------CCCCCCh--hhhhccccCcE
Q 000202 1498 TVFFFGS-----------MYKSEYIKL---------------------------------PPDLISS--DILSRLQALET 1531 (1866)
Q Consensus 1498 ~l~~~~~-----------~~~~~~~~l---------------------------------~~~~~~~--~~l~~L~~L~~ 1531 (1866)
++.++.. +..+....+ ..+.+.. ..+..+++|+.
T Consensus 210 ~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~ 289 (606)
T 3vq2_A 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289 (606)
T ss_dssp EEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSE
T ss_pred eccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCE
Confidence 3332210 000000000 0000000 01445666777
Q ss_pred eecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccc--------cc
Q 000202 1532 LSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSI--------VS 1603 (1866)
Q Consensus 1532 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--------~~ 1603 (1866)
|+++.+... .++ .+..+++|+.|+++.|.+..++.. ..++|+.+.+......... ..
T Consensus 290 L~l~~~~~~--------~l~-~l~~~~~L~~L~l~~n~l~~lp~~------~l~~L~~L~l~~n~~~~~~~~~~l~~L~~ 354 (606)
T 3vq2_A 290 MSLAGVSIK--------YLE-DVPKHFKWQSLSIIRCQLKQFPTL------DLPFLKSLTLTMNKGSISFKKVALPSLSY 354 (606)
T ss_dssp EEEESCCCC--------CCC-CCCTTCCCSEEEEESCCCSSCCCC------CCSSCCEEEEESCSSCEECCCCCCTTCCE
T ss_pred EEecCccch--------hhh-hccccccCCEEEcccccCcccccC------CCCccceeeccCCcCccchhhccCCCCCE
Confidence 776643321 122 566677777777777776544411 2344444444322111000 00
Q ss_pred c------c------cccccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCC-CCcccccCCcEEEec
Q 000202 1604 W------V------TDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSD-FGVGYMSGLKFCIIS 1670 (1866)
Q Consensus 1604 ~------~------~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~-~~l~~l~~L~~L~l~ 1670 (1866)
. + +...........+.+.......+|. .+..+..+..+.+.++ .+..+.. ..++.+++|+.|+++
T Consensus 355 L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~ 432 (606)
T 3vq2_A 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA-NFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDIS 432 (606)
T ss_dssp EECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECC-CCTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECT
T ss_pred EECcCCccCCCcchhhhhccCCcccEeECCCCccccchh-hccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECc
Confidence 0 0 0000000111111222212222221 1111223334443332 3333333 357789999999999
Q ss_pred ccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeee
Q 000202 1671 ECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTV 1750 (1866)
Q Consensus 1671 ~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I 1750 (1866)
+|. +...... ....+++|+.|+++++.-..... ....+.+++|+.|++++| +++..++ ..+.++++|++|++
T Consensus 433 ~n~-l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 433 YTN-TKIDFDG---IFLGLTSLNTLKMAGNSFKDNTL--SNVFANTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNM 504 (606)
T ss_dssp TSC-CEECCTT---TTTTCTTCCEEECTTCEEGGGEE--CSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEEC
T ss_pred CCC-CCccchh---hhcCCCCCCEEECCCCcCCCcch--HHhhccCCCCCEEECCCC-cCCccCh-hhhcccccCCEEEC
Confidence 975 4333222 34568999999998864321111 112346899999999999 7777654 46788999999999
Q ss_pred ccccccceecccCccccccccCCCCcCEEeccCCccccccccC--CCC-CccEEEEEcCcc
Q 000202 1751 EYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIWRN--DWP-SLEYISFYGCPK 1808 (1866)
Q Consensus 1751 ~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~~~--~lp-sLe~L~I~~Cp~ 1808 (1866)
++| .+..++. ..+..+++|+.|+|++|. ++.++.. .+| +|++|+++++|-
T Consensus 505 s~N-~l~~~~~------~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 505 SHN-NLLFLDS------SHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CSS-CCSCEEG------GGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCC
T ss_pred CCC-cCCCcCH------HHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCc
Confidence 999 4555432 235578999999999986 7777543 566 699999988754
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-19 Score=229.88 Aligned_cols=362 Identities=19% Similarity=0.194 Sum_probs=240.7
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~ 1451 (1866)
++++.|++++|.+..++ .+..+++|++|++++|.....+++..|..+++|++|+|++|.+..+ |..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 68999999999998763 4788999999999998666678777779999999999999999866 78899999999999
Q ss_pred cccccCcccCCcc--ccCCCCCcEEEccCCCCCcC-Chh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhcc-
Q 000202 1452 LRDCDFLFVLPPE--VGSLECLEVLDLRGTEIKML-PKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRL- 1526 (1866)
Q Consensus 1452 L~~~~~~~~lP~~--i~~L~~L~~L~l~~~~i~~l-p~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L- 1526 (1866)
|++|.+.+..|.. ++++++|++|++++|.++.+ |.. ++++++|++|+++++.- ..+.. ..+..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l------~~~~~-----~~l~~l~ 178 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV------KSICE-----EDLLNFQ 178 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB------SCCCT-----TTSGGGT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc------cccCh-----hhhhccc
Confidence 9999987766665 89999999999999999977 555 89999999999976431 11111 123333
Q ss_pred -ccCcEeecccCCCCCcccccc-ccccccccCCCCCCEEEeecCCccchH-HhhccCccccCCcceeEEEEecccccccc
Q 000202 1527 -QALETLSIDVHPGDKRWDKDV-KIVITEVSGLTKLSSLSFHFPEIECVA-EFLKGSAWNNQQLTEFKFVVGHDVKSIVS 1603 (1866)
Q Consensus 1527 -~~L~~L~l~~~~~~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~l~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 1603 (1866)
.+|+.|+++.+.......... ......+..+++|+.|+++.|.+.... ..+... ....+++.+.+.......
T Consensus 179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~---- 253 (455)
T 3v47_A 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA-IAGTKIQSLILSNSYNMG---- 253 (455)
T ss_dssp TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH-TTTCCEEEEECTTCTTTS----
T ss_pred cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc-ccccceeeEeeccccccc----
Confidence 578888887654321100000 001123446688999999999876532 222111 112334443331110000
Q ss_pred cccccccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcc--cccCCcEEEecccCCccEeccC
Q 000202 1604 WVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVG--YMSGLKFCIISECLKIKTVVDT 1681 (1866)
Q Consensus 1604 ~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~--~l~~L~~L~l~~c~~l~~i~~~ 1681 (1866)
..+ ....+..+....+. ..++|+.|++++|. +..+...
T Consensus 254 ----------------------~~~-----------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~ 293 (455)
T 3v47_A 254 ----------------------SSF-----------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKS 293 (455)
T ss_dssp ----------------------CCT-----------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTT
T ss_pred ----------------------ccc-----------------chhhhccCcccccccccccCceEEEecCcc-ccccchh
Confidence 000 00000111111111 24689999998854 4444332
Q ss_pred CCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecc
Q 000202 1682 KEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIIL 1761 (1866)
Q Consensus 1682 ~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~ 1761 (1866)
....+++|+.|+++++. ++.+. ......+++|+.|++++| +++.+++ ..+.++++|++|++++| .+..++.
T Consensus 294 ---~~~~l~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~ 364 (455)
T 3v47_A 294 ---VFSHFTDLEQLTLAQNE-INKID--DNAFWGLTHLLKLNLSQN-FLGSIDS-RMFENLDKLEVLDLSYN-HIRALGD 364 (455)
T ss_dssp ---TTTTCTTCCEEECTTSC-CCEEC--TTTTTTCTTCCEEECCSS-CCCEECG-GGGTTCTTCCEEECCSS-CCCEECT
T ss_pred ---hcccCCCCCEEECCCCc-ccccC--hhHhcCcccCCEEECCCC-ccCCcCh-hHhcCcccCCEEECCCC-cccccCh
Confidence 23557889999988753 22211 111235789999999998 6777644 56778999999999998 4555532
Q ss_pred cCccccccccCCCCcCEEeccCCcccccccc---CCCCCccEEEEEcCcc
Q 000202 1762 DGEITYSSCIMLPSLKKLRLHHLPELANIWR---NDWPSLEYISFYGCPK 1808 (1866)
Q Consensus 1762 ~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~~---~~lpsLe~L~I~~Cp~ 1808 (1866)
..+..+++|+.|+|+++. ++.+.. ..+++|++|++++||-
T Consensus 365 ------~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 365 ------QSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp ------TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ------hhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCc
Confidence 235578999999999874 666644 3678999999988753
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-19 Score=220.83 Aligned_cols=178 Identities=21% Similarity=0.277 Sum_probs=134.5
Q ss_pred CCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCC
Q 000202 1367 EPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKC 1446 (1866)
Q Consensus 1367 ~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~ 1446 (1866)
.......+++++.+++.++.+..++.+..+++|++|++++| .+..+++ +..+++|++|++++|.+..+| .+..+++
T Consensus 36 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~ 111 (347)
T 4fmz_A 36 DVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTN 111 (347)
T ss_dssp SEECHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTT
T ss_pred CcccchhcccccEEEEeCCccccchhhhhcCCccEEEccCC-ccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCc
Confidence 33445678899999999999998888888999999999887 5667766 578899999999999988876 5889999
Q ss_pred CcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhcc
Q 000202 1447 LQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRL 1526 (1866)
Q Consensus 1447 L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L 1526 (1866)
|++|++++|.+. .+|. +.++++|++|++++|.....+..+..+++|++|++..+.-. .+ ..+..+
T Consensus 112 L~~L~l~~n~i~-~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~------~~-------~~~~~l 176 (347)
T 4fmz_A 112 LRELYLNEDNIS-DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK------DV-------TPIANL 176 (347)
T ss_dssp CSEEECTTSCCC-CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC------CC-------GGGGGC
T ss_pred CCEEECcCCccc-Cchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC------Cc-------hhhccC
Confidence 999999998854 4554 88899999999999855544455888999999988654311 11 116678
Q ss_pred ccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1527 QALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1527 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
++|+.|+++.+.... + ..+..+++|+.|+++.|.+..
T Consensus 177 ~~L~~L~l~~n~l~~--------~-~~~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 177 TDLYSLSLNYNQIED--------I-SPLASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp TTCSEEECTTSCCCC--------C-GGGGGCTTCCEEECCSSCCCC
T ss_pred CCCCEEEccCCcccc--------c-ccccCCCccceeecccCCCCC
Confidence 888888887543221 2 226777888888887776554
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-20 Score=240.86 Aligned_cols=404 Identities=16% Similarity=0.160 Sum_probs=233.1
Q ss_pred CCccccccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCC--CChhhcCC
Q 000202 1369 PSEEEWTHAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKS--LPETLVNL 1444 (1866)
Q Consensus 1369 ~~~~~~~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~--lp~~i~~L 1444 (1866)
..+..+++|++|++++|.+..++ .+..+++|++|++++| .+..+++..++.+++|++|+|++|.+.. .|..++++
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 35678899999999999999776 3789999999999988 6778888877999999999999999984 46789999
Q ss_pred CCCcEEecccccCcccCC-ccccCCCCCcEEEccCCCCCc-CChhhcCCCccceeccccccccCCCccccCCCCCCChhh
Q 000202 1445 KCLQILILRDCDFLFVLP-PEVGSLECLEVLDLRGTEIKM-LPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDI 1522 (1866)
Q Consensus 1445 ~~L~~L~L~~~~~~~~lP-~~i~~L~~L~~L~l~~~~i~~-lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~ 1522 (1866)
++|++|++++|...+.+| ..++++++|++|++++|.++. .|..++++++|++|++...... .++...
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-----------~~~~~~ 191 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-----------FLLEIF 191 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-----------THHHHH
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-----------ccchhh
Confidence 999999999998777776 589999999999999999985 6888999999999998653210 111222
Q ss_pred hhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchH-HhhccCccccCCcceeEEEEe------
Q 000202 1523 LSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVA-EFLKGSAWNNQQLTEFKFVVG------ 1595 (1866)
Q Consensus 1523 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-~~~~~~~~~~~~L~~l~l~~~------ 1595 (1866)
+..+++|+.|+++.+.....- .........+++|+.|+++.+.+.... ..+........+|+.+.+..+
T Consensus 192 ~~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~ 267 (549)
T 2z81_A 192 ADILSSVRYLELRDTNLARFQ----FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267 (549)
T ss_dssp HHSTTTBSEEEEESCBCTTCC----CCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS
T ss_pred HhhcccccEEEccCCcccccc----ccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc
Confidence 455778888888754322100 000111234556666666666544321 111111112223333333211
Q ss_pred -----------------------ccccccccc--ccccccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCc
Q 000202 1596 -----------------------HDVKSIVSW--VTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSI 1650 (1866)
Q Consensus 1596 -----------------------~~~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l 1650 (1866)
..+.....+ +..............+....+..+|...+..+..+..+.+.++.-.
T Consensus 268 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~ 347 (549)
T 2z81_A 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347 (549)
T ss_dssp CCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCC
T ss_pred cccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccc
Confidence 000000000 0000000112223334444455566655444444444444433211
Q ss_pred eecC--CCCcccccCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCc
Q 000202 1651 VSLS--DFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACR 1728 (1866)
Q Consensus 1651 ~~L~--~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~ 1728 (1866)
...+ ...++.+++|+.|++++| .++.+.... .....+++|+.|+++++ +++.+. ...+.+++|+.|++++|
T Consensus 348 ~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~~~l~~L~~L~Ls~N-~l~~lp---~~~~~~~~L~~L~Ls~N- 420 (549)
T 2z81_A 348 EEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTG-EILLTLKNLTSLDISRN-TFHPMP---DSCQWPEKMRFLNLSST- 420 (549)
T ss_dssp HHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHH-HHGGGCTTCCEEECTTC-CCCCCC---SCCCCCTTCCEEECTTS-
T ss_pred cccccchhhhhccccCcEEEccCC-cccccccch-hhhhcCCCCCEEECCCC-CCccCC---hhhcccccccEEECCCC-
Confidence 1111 112355666777776664 333332100 01234566666666654 222211 11124556666666666
Q ss_pred cCccccchhhhhhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCcccccccc-CCCCCccEEEEEcCc
Q 000202 1729 HLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIWR-NDWPSLEYISFYGCP 1807 (1866)
Q Consensus 1729 ~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~~-~~lpsLe~L~I~~Cp 1807 (1866)
+++.++.+ ..++|++|++++| .++.++ ..+++|+.|+|+++ +++.++. ..+++|++|++++|
T Consensus 421 ~l~~l~~~----~~~~L~~L~Ls~N-~l~~~~----------~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N- 483 (549)
T 2z81_A 421 GIRVVKTC----IPQTLEVLDVSNN-NLDSFS----------LFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRN- 483 (549)
T ss_dssp CCSCCCTT----SCTTCSEEECCSS-CCSCCC----------CCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSS-
T ss_pred Ccccccch----hcCCceEEECCCC-Chhhhc----------ccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCC-
Confidence 34444321 0245566666555 233221 25677777777776 3555543 25677777777776
Q ss_pred ccccc
Q 000202 1808 KLKKM 1812 (1866)
Q Consensus 1808 ~L~~l 1812 (1866)
+|+.+
T Consensus 484 ~l~~~ 488 (549)
T 2z81_A 484 QLKSV 488 (549)
T ss_dssp CCCCC
T ss_pred ccCCc
Confidence 44433
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=234.42 Aligned_cols=408 Identities=18% Similarity=0.147 Sum_probs=246.9
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEec
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILIL 1452 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L 1452 (1866)
++++.|++++|.+..++ .+..+++|++|+|++| .+..+++..|+.+++|++|+|++|.++.+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEec
Confidence 68889999999988776 3678889999999988 56666555668899999999999999988877 8899999999
Q ss_pred ccccCcc-cCCccccCCCCCcEEEccCCCCCcCChhhcCCCcc--ceecccccccc-CCCc---cc---------cCCCC
Q 000202 1453 RDCDFLF-VLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSL--RYLTVFFFGSM-YKSE---YI---------KLPPD 1516 (1866)
Q Consensus 1453 ~~~~~~~-~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L--~~L~l~~~~~~-~~~~---~~---------~l~~~ 1516 (1866)
++|.+.+ .+|..++++++|++|++++|.++. ..++.+++| ++|++.++.-. .... .. .++.+
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 9998766 578889999999999999998875 356777777 88888764320 0000 00 01111
Q ss_pred ----CCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchH--HhhccCccccCCccee
Q 000202 1517 ----LISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVA--EFLKGSAWNNQQLTEF 1590 (1866)
Q Consensus 1517 ----~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~--~~~~~~~~~~~~L~~l 1590 (1866)
.+....+..+++|+.|+++.+.....+.. .......+..+++|+.|+++.+.+.... ..... ....+|+.|
T Consensus 176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~--~~~~~L~~L 252 (520)
T 2z7x_B 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSY-FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL--VWHTTVWYF 252 (520)
T ss_dssp SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH-HHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH--HHTSSCSEE
T ss_pred cchhhhhhhhhhcccceeeccccccccccccce-eecchhhhccccchhhccccccccCHHHHHHHHHH--hhhCcccEE
Confidence 11222345677788888775432111111 1122346778888898888877655321 11111 012467777
Q ss_pred EEEEecccccccccccccc-cccccCccceeEeecCCCCChHHHHHH-Hh--hcceecccccCceecCCCCcccccCCcE
Q 000202 1591 KFVVGHDVKSIVSWVTDYV-QCDYNQHDRCLRFVNGKNVPPEVIQIL-IH--STAFYVDHHLSIVSLSDFGVGYMSGLKF 1666 (1866)
Q Consensus 1591 ~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~~~~~p~~~~~~l-~~--~~~l~~~~~~~l~~L~~~~l~~l~~L~~ 1666 (1866)
.+....-...++.++.... ..........+..... .+|...+..+ .. +..+.+.++. +...+ ..+.+++|++
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~--~~~~l~~L~~ 328 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTR-MVHML--CPSKISPFLH 328 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSC-CCCCC--CCSSCCCCCE
T ss_pred EeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCc-ccccc--chhhCCcccE
Confidence 7764321112333221000 0011112233333334 5663333333 21 3344333322 22221 1267889999
Q ss_pred EEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCcc-ccchhhhhhcccc
Q 000202 1667 CIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEY-VFTCSMIQFLAKL 1745 (1866)
Q Consensus 1667 L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~-l~~~~~l~~L~sL 1745 (1866)
|++++|.--..++. ....+++|+.|+++++. ++.+.......+.+++|+.|++++| +++. ++. ..+..+++|
T Consensus 329 L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~-~~~~~l~~L 401 (520)
T 2z7x_B 329 LDFSNNLLTDTVFE----NCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKK-GDCSWTKSL 401 (520)
T ss_dssp EECCSSCCCTTTTT----TCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGG-CSCCCCTTC
T ss_pred EEeECCccChhhhh----hhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCC-cCCccccc-chhccCccC
Confidence 99998643222222 23568889999988753 2211000111346789999999988 5555 533 345668889
Q ss_pred ceeeeccccccceecccCccccccccCC-CCcCEEeccCCccccccccC--CCCCccEEEEEcCccccccC
Q 000202 1746 EELTVEYCLAVKSIILDGEITYSSCIML-PSLKKLRLHHLPELANIWRN--DWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1746 e~L~I~~C~~L~~l~~~~~~~~~~~~~l-p~L~~L~L~~c~~L~~i~~~--~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
++|++++|.--..++ ..+ ++|+.|+|++|. +..++.. .+++|++|++++| +++.+|
T Consensus 402 ~~L~Ls~N~l~~~~~----------~~l~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~ 460 (520)
T 2z7x_B 402 LSLNMSSNILTDTIF----------RCLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN-QLKSVP 460 (520)
T ss_dssp CEEECCSSCCCGGGG----------GSCCTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCC
T ss_pred CEEECcCCCCCcchh----------hhhcccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC-cCCccC
Confidence 999998884222221 122 688999998874 6666432 6888999999888 566665
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-19 Score=226.21 Aligned_cols=304 Identities=17% Similarity=0.133 Sum_probs=208.6
Q ss_pred CCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCC
Q 000202 1368 PPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCL 1447 (1866)
Q Consensus 1368 ~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L 1447 (1866)
+..+..+++++.|++++|.+..+|.+..+++|+.|++++| .+..+| ++.+++|++|+|++|.++.+| ++++++|
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L 108 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKL 108 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTC
T ss_pred ccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcC
Confidence 3456778999999999999999998889999999999988 566676 478999999999999999886 8999999
Q ss_pred cEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccc
Q 000202 1448 QILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQ 1527 (1866)
Q Consensus 1448 ~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~ 1527 (1866)
++|+|++|.+.+ +| ++++++|++|++++|.++.+| ++++++|++|++..+...... .+..++
T Consensus 109 ~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~-------------~~~~l~ 170 (457)
T 3bz5_A 109 TYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL-------------DVTPQT 170 (457)
T ss_dssp CEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC-------------CCTTCT
T ss_pred CEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc-------------ccccCC
Confidence 999999998654 65 899999999999999999886 889999999999765432211 256788
Q ss_pred cCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccccccc
Q 000202 1528 ALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTD 1607 (1866)
Q Consensus 1528 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 1607 (1866)
+|+.|+++.+... .++ +..+++|+.|+++.|.+..++ ....++|+.|.+.
T Consensus 171 ~L~~L~ls~n~l~--------~l~--l~~l~~L~~L~l~~N~l~~~~------l~~l~~L~~L~Ls-------------- 220 (457)
T 3bz5_A 171 QLTTLDCSFNKIT--------ELD--VSQNKLLNRLNCDTNNITKLD------LNQNIQLTFLDCS-------------- 220 (457)
T ss_dssp TCCEEECCSSCCC--------CCC--CTTCTTCCEEECCSSCCSCCC------CTTCTTCSEEECC--------------
T ss_pred cCCEEECCCCccc--------eec--cccCCCCCEEECcCCcCCeec------cccCCCCCEEECc--------------
Confidence 9999999854322 222 778899999999988876541 1122333333321
Q ss_pred cccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCcccc
Q 000202 1608 YVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTA 1687 (1866)
Q Consensus 1608 ~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~ 1687 (1866)
. ..+..++ ++.+++|+.|+++++ .+..++. .
T Consensus 221 --------------~-------------------------N~l~~ip---~~~l~~L~~L~l~~N-~l~~~~~------~ 251 (457)
T 3bz5_A 221 --------------S-------------------------NKLTEID---VTPLTQLTYFDCSVN-PLTELDV------S 251 (457)
T ss_dssp --------------S-------------------------SCCSCCC---CTTCTTCSEEECCSS-CCSCCCC------T
T ss_pred --------------C-------------------------CcccccC---ccccCCCCEEEeeCC-cCCCcCH------H
Confidence 0 0111111 345667777777664 3433321 2
Q ss_pred ccccc----------ccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccc
Q 000202 1688 VFPSL----------ENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVK 1757 (1866)
Q Consensus 1688 ~f~~L----------~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~ 1757 (1866)
.|++| +.|+++++..+. .++.+.+++|+.|++++|+.+..++. ..++|+.|++++|++|+
T Consensus 252 ~l~~L~~L~l~~n~L~~L~l~~n~~~~-----~~~~~~l~~L~~L~Ls~n~~l~~l~~-----~~~~L~~L~l~~~~~L~ 321 (457)
T 3bz5_A 252 TLSKLTTLHCIQTDLLEIDLTHNTQLI-----YFQAEGCRKIKELDVTHNTQLYLLDC-----QAAGITELDLSQNPKLV 321 (457)
T ss_dssp TCTTCCEEECTTCCCSCCCCTTCTTCC-----EEECTTCTTCCCCCCTTCTTCCEEEC-----TTCCCSCCCCTTCTTCC
T ss_pred HCCCCCEEeccCCCCCEEECCCCccCC-----cccccccccCCEEECCCCcccceecc-----CCCcceEechhhcccCC
Confidence 24444 444444443322 23345678888888888877776642 34566777777777776
Q ss_pred eecccCc-cccccccCCCCcCEEeccCC
Q 000202 1758 SIILDGE-ITYSSCIMLPSLKKLRLHHL 1784 (1866)
Q Consensus 1758 ~l~~~~~-~~~~~~~~lp~L~~L~L~~c 1784 (1866)
.+...+. .....+..+++|+.|+++++
T Consensus 322 ~L~L~~N~l~~l~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 322 YLYLNNTELTELDVSHNTKLKSLSCVNA 349 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCSEEECCSS
T ss_pred EEECCCCcccccccccCCcCcEEECCCC
Confidence 6643321 11112445677777777654
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=238.34 Aligned_cols=409 Identities=15% Similarity=0.067 Sum_probs=238.3
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~ 1451 (1866)
..++.|++++|.+..++ .+..+++|++|+|++| .+..+++..|+++++|++|+|++|.+..+ |..++++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 36899999999999775 4789999999999988 56667666668999999999999999866 67899999999999
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCcCC-hhhcCCCccceecccccc----------ccCCCc--cccCCCCCC
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLP-KEIGKLTSLRYLTVFFFG----------SMYKSE--YIKLPPDLI 1518 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~----------~~~~~~--~~~l~~~~~ 1518 (1866)
|++|.+.+..|..++++++|++|++++|.+..++ ..+..+++|++|++.++. .+..+. .+.+..+.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 9999977666788999999999999999999763 345559999999997632 111111 122222221
Q ss_pred Chhh--hhccccCcEeecccCCCCC-------------------------c-------------------cccccc-ccc
Q 000202 1519 SSDI--LSRLQALETLSIDVHPGDK-------------------------R-------------------WDKDVK-IVI 1551 (1866)
Q Consensus 1519 ~~~~--l~~L~~L~~L~l~~~~~~~-------------------------~-------------------~~~~~~-~~~ 1551 (1866)
.... .....+|+.|+++.+.... . ..+... ...
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 1100 0111223333322211000 0 000111 112
Q ss_pred ccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccccccccccccccCccceeEeecCC-CCCh
Q 000202 1552 TEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGK-NVPP 1630 (1866)
Q Consensus 1552 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~p~ 1630 (1866)
..+..+++|+.|+++.|.+..++..+ ...++|+.|.+.. ..+..... ...........+.+...... .+|+
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~lp~~l----~~l~~L~~L~l~~-n~l~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSELPSGL----VGLSTLKKLVLSA-NKFENLCQ---ISASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSCCCSSC----CSCTTCCEEECTT-CCCSBGGG---GCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred HHhccccCCCEEeccCCccCCCChhh----cccccCCEEECcc-CCcCcCch---hhhhccCcCCEEECCCCCcccccch
Confidence 23566777788888777776554322 2334566555531 11111111 00000011111222211111 2333
Q ss_pred HHHHHHHhhcceecccccCceecC--CCCcccccCCcEEEecccCCccEeccCCCccccccccccccccccccccccccc
Q 000202 1631 EVIQILIHSTAFYVDHHLSIVSLS--DFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQ 1708 (1866)
Q Consensus 1631 ~~~~~l~~~~~l~~~~~~~l~~L~--~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~ 1708 (1866)
..+..+..+..+.+..+ .+..+. ...++.+++|++|++++| .+..+... ....+++|+.|+++++.-.....
T Consensus 344 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~- 417 (606)
T 3t6q_A 344 GCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTE---AFKECPQLELLDLAFTRLKVKDA- 417 (606)
T ss_dssp STTTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTT---TTTTCTTCSEEECTTCCEECCTT-
T ss_pred hhhhccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCC-cCCcCCHH---HhcCCccCCeEECCCCcCCCccc-
Confidence 22222233333333322 223332 234566777777777774 33333222 23446777777777643211100
Q ss_pred ccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccce-ecccCccccccccCCCCcCEEeccCCccc
Q 000202 1709 GILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKS-IILDGEITYSSCIMLPSLKKLRLHHLPEL 1787 (1866)
Q Consensus 1709 ~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~-l~~~~~~~~~~~~~lp~L~~L~L~~c~~L 1787 (1866)
......+++|+.|++++| .++..++ ..+.++++|++|++++|.--.. ++. ...+..+++|+.|+|++|. +
T Consensus 418 -~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~~~~l~~L~~L~Ls~n~-l 488 (606)
T 3t6q_A 418 -QSPFQNLHLLKVLNLSHS-LLDISSE-QLFDGLPALQHLNLQGNHFPKGNIQK-----TNSLQTLGRLEILVLSFCD-L 488 (606)
T ss_dssp -CCTTTTCTTCCEEECTTC-CCBTTCT-TTTTTCTTCCEEECTTCBCGGGEECS-----SCGGGGCTTCCEEECTTSC-C
T ss_pred -chhhhCcccCCEEECCCC-ccCCcCH-HHHhCCCCCCEEECCCCCCCcccccc-----chhhccCCCccEEECCCCc-c
Confidence 011235788888888888 4555433 4566788888888888842221 111 1234578999999999985 5
Q ss_pred cccc---cCCCCCccEEEEEcCc
Q 000202 1788 ANIW---RNDWPSLEYISFYGCP 1807 (1866)
Q Consensus 1788 ~~i~---~~~lpsLe~L~I~~Cp 1807 (1866)
..+. ...+++|++|++++|.
T Consensus 489 ~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 489 SSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSC
T ss_pred CccChhhhccccCCCEEECCCCc
Confidence 5542 2468999999999884
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.5e-19 Score=238.11 Aligned_cols=127 Identities=21% Similarity=0.208 Sum_probs=113.1
Q ss_pred ccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~ 1451 (1866)
++++.|++++|.+..+|. +..+++|++|+|++| .+..+++..++++++|++|+|++|.++.+|. .++++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 689999999999998884 778999999999988 5667777777999999999999999999996 699999999999
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCcC-ChhhcCCCccceeccccc
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTVFFF 1502 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~ 1502 (1866)
|++|.+.+..|..++++++|++|++++|.++.+ |..++++++|++|+++++
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence 999997766668899999999999999999866 556899999999999764
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-19 Score=244.80 Aligned_cols=412 Identities=17% Similarity=0.076 Sum_probs=195.0
Q ss_pred cccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCC-CCChhhcCCCCCcEE
Q 000202 1372 EEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIK-SLPETLVNLKCLQIL 1450 (1866)
Q Consensus 1372 ~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L 1450 (1866)
..+++|+.|++++|.+........+++|+.|++++|.....+|..++..+++|++|+|++|.+. .+|..++++++|++|
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 323 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323 (768)
T ss_dssp TTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEE
T ss_pred hcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEE
Confidence 3455555666665555422222255566666666554333555555443466666666666655 555666666666666
Q ss_pred ecccccCcccCCcc-ccCCCCCcEEEccCCCCC-cCChhhcCCC-ccceeccccccc------------cCCCccccCCC
Q 000202 1451 ILRDCDFLFVLPPE-VGSLECLEVLDLRGTEIK-MLPKEIGKLT-SLRYLTVFFFGS------------MYKSEYIKLPP 1515 (1866)
Q Consensus 1451 ~L~~~~~~~~lP~~-i~~L~~L~~L~l~~~~i~-~lp~~i~~L~-~L~~L~l~~~~~------------~~~~~~~~l~~ 1515 (1866)
+|++|.+.+.+|.. ++++++|++|++++|.+. .+|..+++++ +|++|+++++.- ...++.+.+..
T Consensus 324 ~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp ECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred ECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 66666655555654 566666666666666655 5566666555 566666554221 01111122222
Q ss_pred CCC---ChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc-hHHhhccCccccCCcceeE
Q 000202 1516 DLI---SSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC-VAEFLKGSAWNNQQLTEFK 1591 (1866)
Q Consensus 1516 ~~~---~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~L~~l~ 1591 (1866)
+.+ ....+..+++|+.|+++.+.. ....+..+..+++|+.|+++.|.+.. ++..+ ...++|+.|.
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~N~l-------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~----~~l~~L~~L~ 472 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSFNYL-------SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL----MYVKTLETLI 472 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCSSEE-------ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG----GGCTTCCEEE
T ss_pred CccccccCHHHhcCCCCCEEECcCCcc-------cCcccHHHhcCCCCCEEECCCCcccCcCCHHH----cCCCCceEEE
Confidence 211 112345555555555553211 11234455555666666666555442 11111 1233444444
Q ss_pred EEEecccccccccccccccccccCccceeEeecCC-CCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEec
Q 000202 1592 FVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGK-NVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIIS 1670 (1866)
Q Consensus 1592 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~ 1670 (1866)
+..+.-....+.++ ........+.+...... .+|.+. ..+..+..+.+.++.-...+| ..++.+++|+.|+++
T Consensus 473 L~~N~l~~~~p~~l----~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 473 LDFNDLTGEIPSGL----SNCTNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIP-AELGDCRSLIWLDLN 546 (768)
T ss_dssp CCSSCCCSCCCGGG----GGCTTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCEEECC-GGGGGCTTCCEEECC
T ss_pred ecCCcccCcCCHHH----hcCCCCCEEEccCCccCCcCChHH-hcCCCCCEEECCCCcccCcCC-HHHcCCCCCCEEECC
Confidence 43111111111111 11111122222222222 222221 112222223332222111222 123444555555554
Q ss_pred ccCCccEeccCCCccccccccccccc-----------------------------------cccccccc------ccccc
Q 000202 1671 ECLKIKTVVDTKEHTTAVFPSLENLT-----------------------------------LNHLWDLT------CIWQG 1709 (1866)
Q Consensus 1671 ~c~~l~~i~~~~~~~~~~f~~L~~L~-----------------------------------l~~~~~L~------~~~~~ 1709 (1866)
+|+-...++.... ....+..+. +..+..+. ....+
T Consensus 547 ~N~l~g~ip~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 547 TNLFNGTIPAAMF----KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp SSEEESBCCGGGG----TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred CCccCCcCChHHh----cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 4432222221100 000000000 00000000 00000
Q ss_pred cc--cccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCccc
Q 000202 1710 IL--PEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPEL 1787 (1866)
Q Consensus 1710 ~~--~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L 1787 (1866)
.. ..+.+++|+.|++++| +++...| ..+.++++|+.|++++|.--..+| ..+..+++|+.|+|+++.--
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N-~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip-------~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYN-MLSGYIP-KEIGSMPYLFILNLGHNDISGSIP-------DEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSS-CCBSCCC-GGGGGCTTCCEEECCSSCCCSCCC-------GGGGGCTTCCEEECCSSCCE
T ss_pred cCchhhhccccccEEECcCC-cccccCC-HHHhccccCCEEeCcCCccCCCCC-------hHHhCCCCCCEEECCCCccc
Confidence 11 1224688999999998 5665444 467889999999999984333443 23567899999999998744
Q ss_pred ccccc--CCCCCccEEEEEcCccccccC
Q 000202 1788 ANIWR--NDWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1788 ~~i~~--~~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
..++. ..+++|++|++++|+--..+|
T Consensus 694 g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 694 GRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp ECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CcCChHHhCCCCCCEEECcCCcccccCC
Confidence 45543 378999999999986544444
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-19 Score=237.14 Aligned_cols=371 Identities=13% Similarity=0.169 Sum_probs=254.6
Q ss_pred CCccccccCcEEEccCCCCCC------------------CCC-CC--CCCcccEEEccCCcCCcccChhHHhcCCCCcEE
Q 000202 1369 PSEEEWTHAKMIFFMDNDLQT------------------LPG-RP--SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVL 1427 (1866)
Q Consensus 1369 ~~~~~~~~l~~l~l~~~~l~~------------------l~~-~~--~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L 1427 (1866)
..+..+++|+.|++++|.+.. +|. +. .+++|++|+|++|.....+|..+ +++++|++|
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L 278 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLI 278 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEE
T ss_pred HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEE
Confidence 346778999999999999987 884 55 79999999999997788888766 789999999
Q ss_pred EccCCC-CC--CCChhhcCC------CCCcEEecccccCcccCCc--cccCCCCCcEEEccCCCCC-cCChhhcCCCccc
Q 000202 1428 NLSKTR-IK--SLPETLVNL------KCLQILILRDCDFLFVLPP--EVGSLECLEVLDLRGTEIK-MLPKEIGKLTSLR 1495 (1866)
Q Consensus 1428 ~Ls~~~-i~--~lp~~i~~L------~~L~~L~L~~~~~~~~lP~--~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~~L~ 1495 (1866)
+|++|. ++ .+|..+++| ++|++|+|++|.+. .+|. .++++++|++|++++|.++ .+| .++++++|+
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 999998 88 489999887 99999999999976 8998 8999999999999999999 899 899999999
Q ss_pred eeccccccccCCCccccCCCCCCChhhhhcccc-CcEeecccCCCCCccccccccccccccCCC--CCCEEEeecCCccc
Q 000202 1496 YLTVFFFGSMYKSEYIKLPPDLISSDILSRLQA-LETLSIDVHPGDKRWDKDVKIVITEVSGLT--KLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1496 ~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~-L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~l~~ 1572 (1866)
+|+++++. ...+|. .+..+++ |+.|+++.+.. ..++..+..+. +|+.|+++.|.+..
T Consensus 357 ~L~L~~N~------l~~lp~------~l~~l~~~L~~L~Ls~N~l--------~~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 357 SLNLAYNQ------ITEIPA------NFCGFTEQVENLSFAHNKL--------KYIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp EEECCSSE------EEECCT------TSEEECTTCCEEECCSSCC--------SSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred EEECCCCc------cccccH------hhhhhcccCcEEEccCCcC--------cccchhhhhcccCccCEEECcCCcCCC
Confidence 99987642 223443 2678888 99999985442 23555555544 89999999988764
Q ss_pred hH-HhhccC---ccccCCcceeEEEEecccccccccccccccccccCccceeEeecCCCCChHHHHHHHhhcceeccccc
Q 000202 1573 VA-EFLKGS---AWNNQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHL 1648 (1866)
Q Consensus 1573 ~~-~~~~~~---~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~ 1648 (1866)
.. ..+... .....+|+.|.+ ....+..+|+..+..+..+..+.+..+
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~L----------------------------s~N~l~~lp~~~~~~l~~L~~L~Ls~N- 467 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINL----------------------------SNNQISKFPKELFSTGSPLSSINLMGN- 467 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEEC----------------------------CSSCCCSCCTHHHHTTCCCSEEECCSS-
T ss_pred cchhhhcccccccccCCCCCEEEC----------------------------cCCccCcCCHHHHccCCCCCEEECCCC-
Confidence 31 111100 001123333322 222333455554444444444444332
Q ss_pred CceecCCCCcc-------cccCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccE
Q 000202 1649 SIVSLSDFGVG-------YMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRI 1721 (1866)
Q Consensus 1649 ~l~~L~~~~l~-------~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~ 1721 (1866)
.+..++...+. .+++|+.|++++| .+..++... ....+++|+.|+++++. ++.+ +...+.+++|+.
T Consensus 468 ~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~--~~~~l~~L~~L~Ls~N~-l~~i---p~~~~~l~~L~~ 540 (636)
T 4eco_A 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDF--RATTLPYLVGIDLSYNS-FSKF---PTQPLNSSTLKG 540 (636)
T ss_dssp CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGG--STTTCTTCCEEECCSSC-CSSC---CCGGGGCSSCCE
T ss_pred CCCCcCHHHhccccccccccCCccEEECcCC-cCCccChhh--hhccCCCcCEEECCCCC-CCCc---ChhhhcCCCCCE
Confidence 23355443222 3449999999995 566655331 11368999999999853 3322 122346899999
Q ss_pred EeEecCc-----cCccccchhhhhhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCccccccc-----
Q 000202 1722 LSIHACR-----HLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIW----- 1791 (1866)
Q Consensus 1722 L~I~~C~-----~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~----- 1791 (1866)
|++++|. ++....| ..+.++++|++|+|++|. +..++.. .+++|+.|+|++++ +.++.
T Consensus 541 L~Ls~N~~ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~-l~~ip~~---------~~~~L~~L~Ls~N~-l~~~~~~~~~ 608 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWP-EGITLCPSLTQLQIGSND-IRKVNEK---------ITPNISVLDIKDNP-NISIDLSYVC 608 (636)
T ss_dssp EECCSCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSSC-CCBCCSC---------CCTTCCEEECCSCT-TCEEECTTTH
T ss_pred EECCCCcccccCcccccCh-HHHhcCCCCCEEECCCCc-CCccCHh---------HhCcCCEEECcCCC-CccccHHhcc
Confidence 9997643 2333223 467789999999999995 4666521 33899999999997 33331
Q ss_pred c---C---CCCCccEEEEEcCcccc
Q 000202 1792 R---N---DWPSLEYISFYGCPKLK 1810 (1866)
Q Consensus 1792 ~---~---~lpsLe~L~I~~Cp~L~ 1810 (1866)
. . .+...+..+|++||.|+
T Consensus 609 ~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 609 PYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp HHHHTTCCEEECCTTSEEESCGGGC
T ss_pred hhhhcccceeecCCccccCCCcccc
Confidence 1 1 12233556889999875
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-18 Score=213.02 Aligned_cols=290 Identities=18% Similarity=0.213 Sum_probs=204.4
Q ss_pred CCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcC
Q 000202 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443 (1866)
Q Consensus 1364 ~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~ 1443 (1866)
.+...+.+..+++|+.|++++|.+..++.+..+++|++|++++| .+..+|. +..+++|++|++++|.+..+|. +..
T Consensus 55 ~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~ 130 (347)
T 4fmz_A 55 KVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN-KITDISA--LQNLTNLRELYLNEDNISDISP-LAN 130 (347)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEECTTSCCCCCGG-GTT
T ss_pred ccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCC-cccCchH--HcCCCcCCEEECcCCcccCchh-hcc
Confidence 34445567788999999999999999888889999999999988 5666653 5889999999999999999887 999
Q ss_pred CCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhh
Q 000202 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDIL 1523 (1866)
Q Consensus 1444 L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l 1523 (1866)
+++|++|++++|.....+| .+..+++|++|++++|.+..++. ++.+++|++|+++++.- ..+ ..+
T Consensus 131 l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l------~~~-------~~~ 195 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI------EDI-------SPL 195 (347)
T ss_dssp CTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC------CCC-------GGG
T ss_pred CCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc------ccc-------ccc
Confidence 9999999999998777655 49999999999999999998876 89999999999976531 111 126
Q ss_pred hccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccc
Q 000202 1524 SRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVS 1603 (1866)
Q Consensus 1524 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 1603 (1866)
..+++|+.|+++.+.... .. .+..+++|+.|+++.|.+..++.
T Consensus 196 ~~l~~L~~L~l~~n~l~~--------~~-~~~~~~~L~~L~l~~n~l~~~~~---------------------------- 238 (347)
T 4fmz_A 196 ASLTSLHYFTAYVNQITD--------IT-PVANMTRLNSLKIGNNKITDLSP---------------------------- 238 (347)
T ss_dssp GGCTTCCEEECCSSCCCC--------CG-GGGGCTTCCEEECCSSCCCCCGG----------------------------
T ss_pred cCCCccceeecccCCCCC--------Cc-hhhcCCcCCEEEccCCccCCCcc----------------------------
Confidence 789999999998654321 22 27788999999998876543221
Q ss_pred cccccccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCC
Q 000202 1604 WVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKE 1683 (1866)
Q Consensus 1604 ~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~ 1683 (1866)
+..+++|++|++++| .+..+.
T Consensus 239 ------------------------------------------------------~~~l~~L~~L~l~~n-~l~~~~---- 259 (347)
T 4fmz_A 239 ------------------------------------------------------LANLSQLTWLEIGTN-QISDIN---- 259 (347)
T ss_dssp ------------------------------------------------------GTTCTTCCEEECCSS-CCCCCG----
T ss_pred ------------------------------------------------------hhcCCCCCEEECCCC-ccCCCh----
Confidence 123455666666654 233321
Q ss_pred cccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccC
Q 000202 1684 HTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDG 1763 (1866)
Q Consensus 1684 ~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~ 1763 (1866)
....+++|+.|+++++ .++.+ .....+++|+.|++++| .++...+ ..+..+++|++|++++|+ ++.++.
T Consensus 260 -~~~~l~~L~~L~l~~n-~l~~~----~~~~~l~~L~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~-- 328 (347)
T 4fmz_A 260 -AVKDLTKLKMLNVGSN-QISDI----SVLNNLSQLNSLFLNNN-QLGNEDM-EVIGGLTNLTTLFLSQNH-ITDIRP-- 328 (347)
T ss_dssp -GGTTCTTCCEEECCSS-CCCCC----GGGGGCTTCSEEECCSS-CCCGGGH-HHHHTCTTCSEEECCSSS-CCCCGG--
T ss_pred -hHhcCCCcCEEEccCC-ccCCC----hhhcCCCCCCEEECcCC-cCCCcCh-hHhhccccCCEEEccCCc-cccccC--
Confidence 1233455555555543 22211 11234677777777777 4554433 455667777777777774 444321
Q ss_pred ccccccccCCCCcCEEeccCCc
Q 000202 1764 EITYSSCIMLPSLKKLRLHHLP 1785 (1866)
Q Consensus 1764 ~~~~~~~~~lp~L~~L~L~~c~ 1785 (1866)
+..+++|+.|++++|+
T Consensus 329 ------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 329 ------LASLSKMDSADFANQV 344 (347)
T ss_dssp ------GGGCTTCSEESSSCC-
T ss_pred ------hhhhhccceeehhhhc
Confidence 3356777777777665
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.1e-19 Score=220.26 Aligned_cols=127 Identities=20% Similarity=0.306 Sum_probs=72.8
Q ss_pred ccccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcE
Q 000202 1373 EWTHAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQI 1449 (1866)
Q Consensus 1373 ~~~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~ 1449 (1866)
.+.+++.+++.++.+..+|. +..+++|++|++++| .+..+++..+..+++|++|+|++|.+..+| ..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 34566666666666666554 345566666666655 345555544455666666666666666554 33566666666
Q ss_pred EecccccCcccCCcc-ccCCCCCcEEEccCCCCCcCCh-hhcCCCccceecccc
Q 000202 1450 LILRDCDFLFVLPPE-VGSLECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1450 L~L~~~~~~~~lP~~-i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~ 1501 (1866)
|+|++|.+. .+|.. ++++++|++|++++|.++.++. .++++++|++|++++
T Consensus 122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 174 (390)
T 3o6n_A 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174 (390)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS
T ss_pred EECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC
Confidence 666666533 44433 3566666666666666665533 356666666666543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=243.57 Aligned_cols=408 Identities=14% Similarity=0.023 Sum_probs=226.3
Q ss_pred CCccccccCcEEEccCCCCC-CCC---CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hh---
Q 000202 1369 PSEEEWTHAKMIFFMDNDLQ-TLP---GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ET--- 1440 (1866)
Q Consensus 1369 ~~~~~~~~l~~l~l~~~~l~-~l~---~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~--- 1440 (1866)
..+..+++|++|++++|.+. .+| .+..+++|++|+|++|.....+|..++.++++|++|+|++|.++..+ ..
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence 45677888888888888876 244 35678888888888886555666665567888888888888887544 34
Q ss_pred hcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCCh
Q 000202 1441 LVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISS 1520 (1866)
Q Consensus 1441 i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 1520 (1866)
++++++|++|++++|.+.+..|. +++++|++|++++|.+...++.++++++|++|++.++.-.. ...
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~-----------~~~ 240 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG-----------DFS 240 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS-----------CHH
T ss_pred hccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC-----------ccc
Confidence 67888888888888887766553 78888888999888887644448888888888886542110 012
Q ss_pred hhhhccccCcEeecccCCCCCcc--------------cccc-ccccccccC-CCCCCEEEeecCCccch-HHhhccCccc
Q 000202 1521 DILSRLQALETLSIDVHPGDKRW--------------DKDV-KIVITEVSG-LTKLSSLSFHFPEIECV-AEFLKGSAWN 1583 (1866)
Q Consensus 1521 ~~l~~L~~L~~L~l~~~~~~~~~--------------~~~~-~~~~~~l~~-l~~L~~L~l~~~~l~~~-~~~~~~~~~~ 1583 (1866)
..+..+++|+.|+++.+...... .+.. ..++..+.. +++|+.|+++.|.+... +..+ ..
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~----~~ 316 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF----GS 316 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG----GG
T ss_pred HHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH----hc
Confidence 23555666666666543321000 0000 122233322 24555555555443321 1111 12
Q ss_pred cCCcceeEEEEecccccccccccccccccccCccceeEeecCC-CCChHHHHHHHhhcceecccccCceecCCCCccc--
Q 000202 1584 NQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGK-NVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGY-- 1660 (1866)
Q Consensus 1584 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~-- 1660 (1866)
..+|+.|.+..+.-...++... +........+.+...... .+|.........+..+.+..+.-...++. .+..
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~---l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~-~~~~~~ 392 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDT---LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-NLCQNP 392 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHH---HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT-TTTCST
T ss_pred CCCccEEECCCCcccCcCCHHH---HhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh-hhhhcc
Confidence 2334444332111000111100 000011111222222222 33433322211334443333221111111 1222
Q ss_pred ccCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhh
Q 000202 1661 MSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQ 1740 (1866)
Q Consensus 1661 l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~ 1740 (1866)
+++|++|++++|.-...++. ....+++|+.|+++++.- +... +...+.+++|+.|++++| +++...| ..+.
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~N~l-~~~~--p~~l~~l~~L~~L~L~~n-~l~~~~p-~~~~ 463 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPP----TLSNCSELVSLHLSFNYL-SGTI--PSSLGSLSKLRDLKLWLN-MLEGEIP-QELM 463 (768)
T ss_dssp TCCCCEEECCSSEEEEECCG----GGGGCTTCCEEECCSSEE-ESCC--CGGGGGCTTCCEEECCSS-CCCSCCC-GGGG
T ss_pred cCCccEEECCCCccccccCH----HHhcCCCCCEEECcCCcc-cCcc--cHHHhcCCCCCEEECCCC-cccCcCC-HHHc
Confidence 56777777777543323322 234567788888776532 2110 111235778888888888 4443333 3566
Q ss_pred hccccceeeeccccccceecccCccccccccCCCCcCEEeccCCccccccc--cCCCCCccEEEEEcCccccccC
Q 000202 1741 FLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIW--RNDWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1741 ~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~--~~~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
.+++|++|++++|.-...++ ..+..+++|+.|+|++|.-...++ .+.+++|++|++++|.-...+|
T Consensus 464 ~l~~L~~L~L~~N~l~~~~p-------~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 464 YVKTLETLILDFNDLTGEIP-------SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCC-------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CCCCceEEEecCCcccCcCC-------HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence 78888888888874332332 234578999999999987443443 3478999999999986544444
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=227.23 Aligned_cols=395 Identities=15% Similarity=0.114 Sum_probs=239.6
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEeccccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRDCD 1456 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~ 1456 (1866)
+.+++++|.+..+|.... ++|+.|++++| .+..+++..+..+++|++|+|++|.++.+ |..++++++|++|+|++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 578999999999996333 89999999988 67788877779999999999999999977 6899999999999999998
Q ss_pred CcccCCccccCCCCCcEEEccCCCCCc--CChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccC--cEe
Q 000202 1457 FLFVLPPEVGSLECLEVLDLRGTEIKM--LPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQAL--ETL 1532 (1866)
Q Consensus 1457 ~~~~lP~~i~~L~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L--~~L 1532 (1866)
+. .+|.. .+++|++|++++|.++. +|..++++++|++|+++++. +....+..+++| +.|
T Consensus 81 l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~--------------l~~~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 81 LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH--------------LEKSSVLPIAHLNISKV 143 (520)
T ss_dssp CC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS--------------CCGGGGGGGTTSCEEEE
T ss_pred ee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc--------------cchhhccccccceeeEE
Confidence 55 78877 89999999999999986 57899999999999997632 112345667777 888
Q ss_pred ecccCCC--CCcccccc-------------------ccccccccCCCCCCEEEeecCC----ccchHHhhccCccccCCc
Q 000202 1533 SIDVHPG--DKRWDKDV-------------------KIVITEVSGLTKLSSLSFHFPE----IECVAEFLKGSAWNNQQL 1587 (1866)
Q Consensus 1533 ~l~~~~~--~~~~~~~~-------------------~~~~~~l~~l~~L~~L~l~~~~----l~~~~~~~~~~~~~~~~L 1587 (1866)
+++.+.. ........ ......+..+++|+.|+++.|. ...+...+. .....++|
T Consensus 144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L 222 (520)
T 2z7x_B 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKL 222 (520)
T ss_dssp EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTC
T ss_pred EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccch
Confidence 8876543 11000000 0111233456777777777764 111222221 12234566
Q ss_pred ceeEEEEecccccccccccccccccccCccceeEeecCC-CCChHHH----HHHHhhcceecccccCceecCCCCcccc-
Q 000202 1588 TEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGK-NVPPEVI----QILIHSTAFYVDHHLSIVSLSDFGVGYM- 1661 (1866)
Q Consensus 1588 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~p~~~~----~~l~~~~~l~~~~~~~l~~L~~~~l~~l- 1661 (1866)
+.+.+....-.......+..... ......+.+...... .+|.+.+ ..+..+..+.+..+ .+ .+|...+..+
T Consensus 223 ~~L~l~~~~l~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n-~~-~~p~~~~~~~~ 299 (520)
T 2z7x_B 223 SNLTLNNIETTWNSFIRILQLVW-HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD-VF-GFPQSYIYEIF 299 (520)
T ss_dssp CEEEEEEEEEEHHHHHHHHHHHH-TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEEC-CC-CSCTHHHHHHH
T ss_pred hhccccccccCHHHHHHHHHHhh-hCcccEEEeecccccCccccchhhcccccCceeEecccccc-ce-ecchhhhhccc
Confidence 66665432110000000000000 011222333333222 2332210 00000111111100 01 1111111111
Q ss_pred --cCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccc-hhh
Q 000202 1662 --SGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFT-CSM 1738 (1866)
Q Consensus 1662 --~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~-~~~ 1738 (1866)
++|+.|++++|.- ..+. ....+++|+.|+++++. ++... ....+.+++|+.|++++| +++.++. ...
T Consensus 300 ~~~~L~~L~l~~n~l-~~~~-----~~~~l~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~ 369 (520)
T 2z7x_B 300 SNMNIKNFTVSGTRM-VHML-----CPSKISPFLHLDFSNNL-LTDTV--FENCGHLTELETLILQMN-QLKELSKIAEM 369 (520)
T ss_dssp HTCCCSEEEEESSCC-CCCC-----CCSSCCCCCEEECCSSC-CCTTT--TTTCCCCSSCCEEECCSS-CCCBHHHHHHH
T ss_pred ccCceeEEEcCCCcc-cccc-----chhhCCcccEEEeECCc-cChhh--hhhhccCCCCCEEEccCC-ccCccccchHH
Confidence 4577777777542 2221 11457899999998763 22211 112246899999999999 6665432 235
Q ss_pred hhhccccceeeeccccccce-ecccCccccccccCCCCcCEEeccCCccccccccCCCCCccEEEEEcCccccccC
Q 000202 1739 IQFLAKLEELTVEYCLAVKS-IILDGEITYSSCIMLPSLKKLRLHHLPELANIWRNDWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1739 l~~L~sLe~L~I~~C~~L~~-l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~~~~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
+..+++|++|++++|. +.. ++.. .+..+++|+.|+|++|.--..++....++|+.|++++| +++.+|
T Consensus 370 ~~~l~~L~~L~Ls~N~-l~~~l~~~------~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip 437 (520)
T 2z7x_B 370 TTQMKSLQQLDISQNS-VSYDEKKG------DCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIP 437 (520)
T ss_dssp HTTCTTCCEEECCSSC-CBCCGGGC------SCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCC
T ss_pred HhhCCCCCEEECCCCc-CCcccccc------hhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccc
Confidence 7789999999999984 433 5421 24577999999999987333333333379999999998 566655
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-18 Score=226.27 Aligned_cols=404 Identities=15% Similarity=0.174 Sum_probs=214.2
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEec
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILIL 1452 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L 1452 (1866)
++++.|++++|.+..++ .+..+++|++|+|++| .+..+++..|+.+++|++|+|++|.++.+|.. .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEEC
Confidence 56777777777777666 4667777777777766 55566555557777777777777777777766 6777777777
Q ss_pred ccccCcc-cCCccccCCCCCcEEEccCCCCCcCChhhcCCCcc--ceecccccccc-CCC---cccc---------CCCC
Q 000202 1453 RDCDFLF-VLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSL--RYLTVFFFGSM-YKS---EYIK---------LPPD 1516 (1866)
Q Consensus 1453 ~~~~~~~-~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L--~~L~l~~~~~~-~~~---~~~~---------l~~~ 1516 (1866)
++|.+.+ ..|..++++++|++|++++|.++.. .+..+++| ++|++..+.-. ... .... +..+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 206 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCc
Confidence 7777554 3456777777777777777777642 34444444 77766553210 000 0000 0000
Q ss_pred C----CChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccch--HHhhccCccccCCccee
Q 000202 1517 L----ISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECV--AEFLKGSAWNNQQLTEF 1590 (1866)
Q Consensus 1517 ~----~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~~~~~~~~~~L~~l 1590 (1866)
. +....+..+++|+.|+++.+... ..........+..+++|+.|+++.+.+... ...... ....+|+.|
T Consensus 207 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~---~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~--~~~~~L~~L 281 (562)
T 3a79_B 207 SLFSVQVNMSVNALGHLQLSNIKLNDEN---CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF--FWPRPVEYL 281 (562)
T ss_dssp SCCCCCCEEEESSEEEEEEEEEECCSTT---HHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH--HTTSSEEEE
T ss_pred cchhhhhhhcccccceEEEecccccccc---cchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh--hhcccccEE
Confidence 0 11112334455555555432100 000111223344555555555554443221 011100 012366666
Q ss_pred EEEEecccccccccccccccccccCccce---eEeecCCCCChHHHHHHHh---hcceecccccCceecCCCCcccccCC
Q 000202 1591 KFVVGHDVKSIVSWVTDYVQCDYNQHDRC---LRFVNGKNVPPEVIQILIH---STAFYVDHHLSIVSLSDFGVGYMSGL 1664 (1866)
Q Consensus 1591 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---L~~~~~~~~p~~~~~~l~~---~~~l~~~~~~~l~~L~~~~l~~l~~L 1664 (1866)
.+....-...++.+..... ......+. +..... .+|...+..+.. +..+.+..+. +..+. ..+.+++|
T Consensus 282 ~l~~n~l~~~ip~~~~~~~--~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~~--~~~~l~~L 355 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYS--ETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTP-FIHMV--CPPSPSSF 355 (562)
T ss_dssp EEEEEEECSCCCCCCCCCC--SCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSC-CCCCC--CCSSCCCC
T ss_pred EEeccEeeccccchhhhcc--cccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCC-ccccc--CccCCCCc
Confidence 6653321112232221100 01111111 122222 556443333311 2333333222 21111 12678899
Q ss_pred cEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCcc-ccchhhhhhcc
Q 000202 1665 KFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEY-VFTCSMIQFLA 1743 (1866)
Q Consensus 1665 ~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~-l~~~~~l~~L~ 1743 (1866)
++|++++|.--..++. ....+++|+.|+++++ +++.+.......+.+++|+.|++++| +++. ++. ..+..++
T Consensus 356 ~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~~l~ 428 (562)
T 3a79_B 356 TFLNFTQNVFTDSVFQ----GCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYD-RTCAWAE 428 (562)
T ss_dssp CEEECCSSCCCTTTTT----TCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSS-CCCCCCT
T ss_pred eEEECCCCccccchhh----hhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCC-cCCCccCh-hhhcCcc
Confidence 9999988643221221 2356788888888874 33321111111346788999999988 4555 433 3456788
Q ss_pred ccceeeeccccccceecccCccccccccCC-CCcCEEeccCCccccccccC--CCCCccEEEEEcCccccccC
Q 000202 1744 KLEELTVEYCLAVKSIILDGEITYSSCIML-PSLKKLRLHHLPELANIWRN--DWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1744 sLe~L~I~~C~~L~~l~~~~~~~~~~~~~l-p~L~~L~L~~c~~L~~i~~~--~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
+|++|++++|. +.... ...+ ++|+.|+|+++ .++.++.. .+++|++|++++| +|+.+|
T Consensus 429 ~L~~L~l~~n~-l~~~~---------~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~ 489 (562)
T 3a79_B 429 SILVLNLSSNM-LTGSV---------FRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVP 489 (562)
T ss_dssp TCCEEECCSSC-CCGGG---------GSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCC
T ss_pred cCCEEECCCCC-CCcch---------hhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCC
Confidence 89999998884 32111 1233 68999999887 57777443 6788999998887 455555
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-18 Score=220.31 Aligned_cols=316 Identities=19% Similarity=0.173 Sum_probs=160.8
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEeccccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRDCD 1456 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~ 1456 (1866)
+.++..++.+..+|... .++++.|+|++| .+..+++..|..+++|++|+|++|.+..+ |..++++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 34555666666666321 246667777665 45555555556667777777777766655 5566677777777777766
Q ss_pred CcccCCccccCCCCCcEEEccCCCCCcC-ChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecc
Q 000202 1457 FLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSID 1535 (1866)
Q Consensus 1457 ~~~~lP~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~ 1535 (1866)
+....+..++++++|++|++++|.+..+ |..+.++++|++|++..+. ...+ ....+.++++|+.|+++
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~------l~~~-----~~~~~~~l~~L~~L~l~ 160 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND------LVYI-----SHRAFSGLNSLEQLTLE 160 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT------CCEE-----CTTSSTTCTTCCEEEEE
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc------ccee-----ChhhccCCCCCCEEECC
Confidence 4433333456677777777777766654 4456666677776664421 1111 11124456666666665
Q ss_pred cCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccccccccccccccC
Q 000202 1536 VHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQ 1615 (1866)
Q Consensus 1536 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 1615 (1866)
.+.... .....+..+++|+.|+++.|.+..+... ......+|+.|.+....
T Consensus 161 ~n~l~~-------~~~~~l~~l~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~l~~~~------------------- 211 (477)
T 2id5_A 161 KCNLTS-------IPTEALSHLHGLIVLRLRHLNINAIRDY---SFKRLYRLKVLEISHWP------------------- 211 (477)
T ss_dssp SCCCSS-------CCHHHHTTCTTCCEEEEESCCCCEECTT---CSCSCTTCCEEEEECCT-------------------
T ss_pred CCcCcc-------cChhHhcccCCCcEEeCCCCcCcEeChh---hcccCcccceeeCCCCc-------------------
Confidence 432111 1122355666666666666654432110 00111222222221000
Q ss_pred ccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCcccccccccccc
Q 000202 1616 HDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENL 1695 (1866)
Q Consensus 1616 ~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L 1695 (1866)
.+..++.. .....+|+.|++++| .++.++.. ....+++|+.|
T Consensus 212 ---------------------------------~~~~~~~~-~~~~~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L 253 (477)
T 2id5_A 212 ---------------------------------YLDTMTPN-CLYGLNLTSLSITHC-NLTAVPYL---AVRHLVYLRFL 253 (477)
T ss_dssp ---------------------------------TCCEECTT-TTTTCCCSEEEEESS-CCCSCCHH---HHTTCTTCCEE
T ss_pred ---------------------------------cccccCcc-cccCccccEEECcCC-cccccCHH---HhcCccccCee
Confidence 00001100 112236777777764 34433321 22345667777
Q ss_pred cccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccCccccccccCCCC
Q 000202 1696 TLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPS 1775 (1866)
Q Consensus 1696 ~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~ 1775 (1866)
+++++. ++.+.. .....+++|+.|++++| +++.+.+ ..+.++++|+.|+|++| .++.++.. .+..+++
T Consensus 254 ~Ls~n~-l~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~------~~~~l~~ 321 (477)
T 2id5_A 254 NLSYNP-ISTIEG--SMLHELLRLQEIQLVGG-QLAVVEP-YAFRGLNYLRVLNVSGN-QLTTLEES------VFHSVGN 321 (477)
T ss_dssp ECCSSC-CCEECT--TSCTTCTTCCEEECCSS-CCSEECT-TTBTTCTTCCEEECCSS-CCSCCCGG------GBSCGGG
T ss_pred ECCCCc-CCccCh--hhccccccCCEEECCCC-ccceECH-HHhcCcccCCEEECCCC-cCceeCHh------HcCCCcc
Confidence 666542 221111 11234566777777766 4555433 34556677777777766 44444311 1335566
Q ss_pred cCEEeccCCc
Q 000202 1776 LKKLRLHHLP 1785 (1866)
Q Consensus 1776 L~~L~L~~c~ 1785 (1866)
|+.|+|+++|
T Consensus 322 L~~L~l~~N~ 331 (477)
T 2id5_A 322 LETLILDSNP 331 (477)
T ss_dssp CCEEECCSSC
T ss_pred cCEEEccCCC
Confidence 7777776655
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.2e-18 Score=216.29 Aligned_cols=330 Identities=19% Similarity=0.236 Sum_probs=234.1
Q ss_pred CCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcC
Q 000202 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443 (1866)
Q Consensus 1364 ~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~ 1443 (1866)
.+...+.+..+++|+.|++++|.+..++.+..+++|+.|++++| .+..+++ ++.+++|++|+|++|.+..+|. +++
T Consensus 57 ~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~ 132 (466)
T 1o6v_A 57 GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNNQITDIDP-LKN 132 (466)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTT
T ss_pred CCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCC-ccccChh--hcCCCCCCEEECCCCCCCCChH-HcC
Confidence 34445567788999999999999998888889999999999988 5666666 5889999999999999999886 999
Q ss_pred CCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhh
Q 000202 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDIL 1523 (1866)
Q Consensus 1444 L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l 1523 (1866)
+++|++|++++|.+. .+| .++++++|++|+++ +.+..++. ++++++|++|+++++.- . .+ ..+
T Consensus 133 l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l-~-----~~-------~~l 195 (466)
T 1o6v_A 133 LTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKV-S-----DI-------SVL 195 (466)
T ss_dssp CTTCSEEEEEEEEEC-CCG-GGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCC-C-----CC-------GGG
T ss_pred CCCCCEEECCCCccC-CCh-hhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcC-C-----CC-------hhh
Confidence 999999999999854 455 58999999999996 45555554 89999999999876431 1 11 236
Q ss_pred hccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccc
Q 000202 1524 SRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVS 1603 (1866)
Q Consensus 1524 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 1603 (1866)
..+++|+.|+++.+.... .. .+..+++|+.|+++.|.+..++. ....++|+.|.+.. ..+.....
T Consensus 196 ~~l~~L~~L~l~~n~l~~--------~~-~~~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~-n~l~~~~~ 260 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISD--------IT-PLGILTNLDELSLNGNQLKDIGT-----LASLTNLTDLDLAN-NQISNLAP 260 (466)
T ss_dssp GGCTTCSEEECCSSCCCC--------CG-GGGGCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEECCS-SCCCCCGG
T ss_pred ccCCCCCEEEecCCcccc--------cc-cccccCCCCEEECCCCCcccchh-----hhcCCCCCEEECCC-Cccccchh
Confidence 788899999988554221 21 26678889999999888776532 12345666666532 11111110
Q ss_pred cccccccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCC
Q 000202 1604 WVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKE 1683 (1866)
Q Consensus 1604 ~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~ 1683 (1866)
..... .+..+.+.. ..+..++. +..+++|+.|++++| .+..+..
T Consensus 261 ----------~~~l~-------------------~L~~L~l~~-n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~--- 304 (466)
T 1o6v_A 261 ----------LSGLT-------------------KLTELKLGA-NQISNISP--LAGLTALTNLELNEN-QLEDISP--- 304 (466)
T ss_dssp ----------GTTCT-------------------TCSEEECCS-SCCCCCGG--GTTCTTCSEEECCSS-CCSCCGG---
T ss_pred ----------hhcCC-------------------CCCEEECCC-CccCcccc--ccCCCccCeEEcCCC-cccCchh---
Confidence 00001 111222221 12233322 567899999999996 4554432
Q ss_pred cccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccC
Q 000202 1684 HTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDG 1763 (1866)
Q Consensus 1684 ~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~ 1763 (1866)
...+++|+.|+++++. ++. ..+...+++|+.|++++| +++.+ ..+.++++|+.|++++|. +..++.
T Consensus 305 --~~~l~~L~~L~L~~n~-l~~----~~~~~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~l~~n~-l~~~~~-- 370 (466)
T 1o6v_A 305 --ISNLKNLTYLTLYFNN-ISD----ISPVSSLTKLQRLFFYNN-KVSDV---SSLANLTNINWLSAGHNQ-ISDLTP-- 370 (466)
T ss_dssp --GGGCTTCSEEECCSSC-CSC----CGGGGGCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSSC-CCBCGG--
T ss_pred --hcCCCCCCEEECcCCc-CCC----chhhccCccCCEeECCCC-ccCCc---hhhccCCCCCEEeCCCCc-cCccch--
Confidence 3568999999999863 332 233467899999999999 77776 357789999999999984 444331
Q ss_pred ccccccccCCCCcCEEeccCCc
Q 000202 1764 EITYSSCIMLPSLKKLRLHHLP 1785 (1866)
Q Consensus 1764 ~~~~~~~~~lp~L~~L~L~~c~ 1785 (1866)
+..+++|+.|++++|+
T Consensus 371 ------~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 371 ------LANLTRITQLGLNDQA 386 (466)
T ss_dssp ------GTTCTTCCEEECCCEE
T ss_pred ------hhcCCCCCEEeccCCc
Confidence 4578999999999987
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.1e-18 Score=224.72 Aligned_cols=137 Identities=24% Similarity=0.262 Sum_probs=116.6
Q ss_pred CCCCCCCccccccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hh
Q 000202 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ET 1440 (1866)
Q Consensus 1364 ~~~~~~~~~~~~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~ 1440 (1866)
+++..|.. -.++++.|++++|.+..++ .+..+++|++|+|++| .+..+++..|+++++|++|+|++|.++.+| ..
T Consensus 18 ~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 18 NFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp CCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence 44444432 2357999999999999776 5789999999999988 678888877899999999999999999776 78
Q ss_pred hcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCc--CChhhcCCCccceeccccc
Q 000202 1441 LVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKM--LPKEIGKLTSLRYLTVFFF 1502 (1866)
Q Consensus 1441 i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~ 1502 (1866)
++++++|++|++++|.+....+..++++++|++|++++|.++. +|..++++++|++|+++++
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence 9999999999999998655444479999999999999999985 7999999999999999764
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-18 Score=226.75 Aligned_cols=303 Identities=19% Similarity=0.206 Sum_probs=172.9
Q ss_pred ccccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcE
Q 000202 1373 EWTHAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQI 1449 (1866)
Q Consensus 1373 ~~~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~ 1449 (1866)
.+.+++.+++.+|.+..+|. +..+++|++|+|++| .+..+++..|+.+++|++|+|++|.+..+|+ .++++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 34556666666666665554 345566666666655 3455555444566666666666666665543 3466666666
Q ss_pred EecccccCcccCCcc-ccCCCCCcEEEccCCCCCcCCh-hhcCCCccceeccccccccCCCccccCCCCCCChhhhhccc
Q 000202 1450 LILRDCDFLFVLPPE-VGSLECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQ 1527 (1866)
Q Consensus 1450 L~L~~~~~~~~lP~~-i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~ 1527 (1866)
|+|++|.+. .+|.. ++++++|++|++++|.++.+|. .++++++|++|+++++.- .. ..+..++
T Consensus 128 L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l------~~--------~~~~~l~ 192 (597)
T 3oja_B 128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL------TH--------VDLSLIP 192 (597)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC------SB--------CCGGGCT
T ss_pred EEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC------CC--------cChhhhh
Confidence 666666543 33333 4666666666666666665533 366666666666543210 00 1134455
Q ss_pred cCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccccccc
Q 000202 1528 ALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTD 1607 (1866)
Q Consensus 1528 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 1607 (1866)
+|+.|+++.+. ...+....+|+.|+++.|.+..++.. .+.+|+.|.+
T Consensus 193 ~L~~L~l~~n~------------l~~l~~~~~L~~L~ls~n~l~~~~~~------~~~~L~~L~L--------------- 239 (597)
T 3oja_B 193 SLFHANVSYNL------------LSTLAIPIAVEELDASHNSINVVRGP------VNVELTILKL--------------- 239 (597)
T ss_dssp TCSEEECCSSC------------CSEEECCTTCSEEECCSSCCCEEECS------CCSCCCEEEC---------------
T ss_pred hhhhhhcccCc------------cccccCCchhheeeccCCcccccccc------cCCCCCEEEC---------------
Confidence 56666655321 11223344566666666554432110 0011222211
Q ss_pred cccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCcccc
Q 000202 1608 YVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTA 1687 (1866)
Q Consensus 1608 ~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~ 1687 (1866)
... .+... ..++.+++|+.|++++| .+..+... ...
T Consensus 240 -------------~~n-------------------------~l~~~--~~l~~l~~L~~L~Ls~N-~l~~~~~~---~~~ 275 (597)
T 3oja_B 240 -------------QHN-------------------------NLTDT--AWLLNYPGLVEVDLSYN-ELEKIMYH---PFV 275 (597)
T ss_dssp -------------CSS-------------------------CCCCC--GGGGGCTTCSEEECCSS-CCCEEESG---GGT
T ss_pred -------------CCC-------------------------CCCCC--hhhccCCCCCEEECCCC-ccCCCCHH---Hhc
Confidence 111 11111 12567889999999985 45554332 345
Q ss_pred cccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccCcccc
Q 000202 1688 VFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITY 1767 (1866)
Q Consensus 1688 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~ 1767 (1866)
.+++|+.|+++++ .++.+ ....+.+|+|+.|++++| .++.+++ .+..+++|+.|+|++|. +..++
T Consensus 276 ~l~~L~~L~Ls~N-~l~~l---~~~~~~l~~L~~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~-l~~~~------- 340 (597)
T 3oja_B 276 KMQRLERLYISNN-RLVAL---NLYGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLK------- 340 (597)
T ss_dssp TCSSCCEEECTTS-CCCEE---ECSSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC-------
T ss_pred CccCCCEEECCCC-CCCCC---CcccccCCCCcEEECCCC-CCCccCc--ccccCCCCCEEECCCCC-CCCcC-------
Confidence 6889999999874 33332 112245899999999998 6776654 46778999999999984 44432
Q ss_pred ccccCCCCcCEEeccCCc
Q 000202 1768 SSCIMLPSLKKLRLHHLP 1785 (1866)
Q Consensus 1768 ~~~~~lp~L~~L~L~~c~ 1785 (1866)
...+++|+.|+|+++|
T Consensus 341 --~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 341 --LSTHHTLKNLTLSHND 356 (597)
T ss_dssp --CCTTCCCSEEECCSSC
T ss_pred --hhhcCCCCEEEeeCCC
Confidence 4478899999998876
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-18 Score=225.06 Aligned_cols=307 Identities=15% Similarity=0.157 Sum_probs=223.7
Q ss_pred CCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEecccccCcccCCccccCCCCCc
Q 000202 1394 PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDCDFLFVLPPEVGSLECLE 1472 (1866)
Q Consensus 1394 ~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~ 1472 (1866)
..+.+++.|++++| .+..+|+.+++.+++|++|+|++|.+..+| ..++.+++|++|+|++|.+.+..|..++++++|+
T Consensus 48 l~l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 48 ITLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGGCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 34678999999876 688899998899999999999999999776 4899999999999999998777777789999999
Q ss_pred EEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCCCCcccccccccc
Q 000202 1473 VLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVI 1551 (1866)
Q Consensus 1473 ~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 1551 (1866)
+|+|++|.++.+|.. ++++++|++|+++++.- ..+ ....+..+++|+.|+++.+....
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l------~~~-----~~~~~~~l~~L~~L~L~~N~l~~---------- 185 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL------ERI-----EDDTFQATTSLQNLQLSSNRLTH---------- 185 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC------CBC-----CTTTTTTCTTCCEEECTTSCCSB----------
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC------CCC-----ChhhhhcCCcCcEEECcCCCCCC----------
Confidence 999999999999877 58999999999876421 112 22346788999999998654221
Q ss_pred ccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccccccccccccccCccceeEeecCCCCChH
Q 000202 1552 TEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPE 1631 (1866)
Q Consensus 1552 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~p~~ 1631 (1866)
..+..+++|+.|+++.|.+..+. .+.+|+.|.+. .
T Consensus 186 ~~~~~l~~L~~L~l~~n~l~~l~--------~~~~L~~L~ls----------------------------~--------- 220 (597)
T 3oja_B 186 VDLSLIPSLFHANVSYNLLSTLA--------IPIAVEELDAS----------------------------H--------- 220 (597)
T ss_dssp CCGGGCTTCSEEECCSSCCSEEE--------CCTTCSEEECC----------------------------S---------
T ss_pred cChhhhhhhhhhhcccCcccccc--------CCchhheeecc----------------------------C---------
Confidence 13567889999999988765432 12234433321 0
Q ss_pred HHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccc
Q 000202 1632 VIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGIL 1711 (1866)
Q Consensus 1632 ~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~ 1711 (1866)
..+..++. ...++|+.|++++|. +..+. ....+++|+.|+++++. ++.+. +.
T Consensus 221 ----------------n~l~~~~~---~~~~~L~~L~L~~n~-l~~~~-----~l~~l~~L~~L~Ls~N~-l~~~~--~~ 272 (597)
T 3oja_B 221 ----------------NSINVVRG---PVNVELTILKLQHNN-LTDTA-----WLLNYPGLVEVDLSYNE-LEKIM--YH 272 (597)
T ss_dssp ----------------SCCCEEEC---SCCSCCCEEECCSSC-CCCCG-----GGGGCTTCSEEECCSSC-CCEEE--SG
T ss_pred ----------------Cccccccc---ccCCCCCEEECCCCC-CCCCh-----hhccCCCCCEEECCCCc-cCCCC--HH
Confidence 00111111 123689999998864 44331 34568999999998753 22211 11
Q ss_pred cccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCccccccc
Q 000202 1712 PEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIW 1791 (1866)
Q Consensus 1712 ~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~ 1791 (1866)
..+.+++|+.|++++| +++.++. ....+++|+.|++++| .+..++. .+..+++|+.|+|++|+ +..+.
T Consensus 273 ~~~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~L~~L~Ls~N-~l~~i~~-------~~~~l~~L~~L~L~~N~-l~~~~ 340 (597)
T 3oja_B 273 PFVKMQRLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHN-HLLHVER-------NQPQFDRLENLYLDHNS-IVTLK 340 (597)
T ss_dssp GGTTCSSCCEEECTTS-CCCEEEC--SSSCCTTCCEEECCSS-CCCCCGG-------GHHHHTTCSEEECCSSC-CCCCC
T ss_pred HhcCccCCCEEECCCC-CCCCCCc--ccccCCCCcEEECCCC-CCCccCc-------ccccCCCCCEEECCCCC-CCCcC
Confidence 2346899999999998 7777644 3456899999999998 4555542 23468999999999986 66666
Q ss_pred cCCCCCccEEEEEcCc
Q 000202 1792 RNDWPSLEYISFYGCP 1807 (1866)
Q Consensus 1792 ~~~lpsLe~L~I~~Cp 1807 (1866)
...+++|+.|++++||
T Consensus 341 ~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 341 LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCTTCCCSEEECCSSC
T ss_pred hhhcCCCCEEEeeCCC
Confidence 6788999999999876
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.1e-18 Score=234.05 Aligned_cols=129 Identities=21% Similarity=0.273 Sum_probs=71.4
Q ss_pred CccccccCcEEEccCCCC-CCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCC-CChh--hcC
Q 000202 1370 SEEEWTHAKMIFFMDNDL-QTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKS-LPET--LVN 1443 (1866)
Q Consensus 1370 ~~~~~~~l~~l~l~~~~l-~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~-lp~~--i~~ 1443 (1866)
.+..+++|+.|++++|.. ..++ .+.++++|++|+|++| .+..+++..|+.+++|++|+|++|.+.. +|.. +++
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 355566666666666632 2332 3456666666666655 3444444444666666666666666653 3443 666
Q ss_pred CCCCcEEecccccCcccCC-ccccCCCCCcEEEccCCCCCcC-ChhhcCC--Cccceecc
Q 000202 1444 LKCLQILILRDCDFLFVLP-PEVGSLECLEVLDLRGTEIKML-PKEIGKL--TSLRYLTV 1499 (1866)
Q Consensus 1444 L~~L~~L~L~~~~~~~~lP-~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L--~~L~~L~l 1499 (1866)
+++|++|+|++|.+.+..| ..+++|++|++|++++|.++.+ |..++.+ ++|+.|++
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 6666666666666544433 3566666666666666665532 3344433 34444444
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-17 Score=222.59 Aligned_cols=126 Identities=25% Similarity=0.287 Sum_probs=97.4
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~ 1451 (1866)
..++.|++++|.++.+| .+..+++|++|+|++| .+..+|+..|+++++|++|+|++|+++.+|. .+++|++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 36778888888888776 3677888888888877 6777777777888888888888888888774 568888888888
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCc--CChhhcCCCccceecccc
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKM--LPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~ 1501 (1866)
|++|.+.+..|..+++|++|++|++++|.++. +|..++.+++|++|++++
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 88887655444567888888888888888774 467778888888888765
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-17 Score=206.12 Aligned_cols=283 Identities=18% Similarity=0.216 Sum_probs=193.1
Q ss_pred ccccccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCC
Q 000202 1371 EEEWTHAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCL 1447 (1866)
Q Consensus 1371 ~~~~~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L 1447 (1866)
+..+++|+.|++.+|.+..++ .+..+++|+.|++++| .+..+++..++.+++|++|+|++|.+..+|.. ++++++|
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence 456889999999999999776 4678999999999988 57788877779999999999999999999977 4899999
Q ss_pred cEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccc
Q 000202 1448 QILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQ 1527 (1866)
Q Consensus 1448 ~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~ 1527 (1866)
++|+|++|.+....|..++++++|++|++++|.++.++ ++.+++|++|++.+..- . .+....
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l----~------------~~~~~~ 205 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL----S------------TLAIPI 205 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCC----S------------EEECCS
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccc----c------------ccCCCC
Confidence 99999999988777888999999999999999998875 56778888887754210 0 022234
Q ss_pred cCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccccccc
Q 000202 1528 ALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTD 1607 (1866)
Q Consensus 1528 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 1607 (1866)
+|+.|+++.+... .++. ...++|+.|+++.|.+...+
T Consensus 206 ~L~~L~l~~n~l~--------~~~~--~~~~~L~~L~l~~n~l~~~~--------------------------------- 242 (390)
T 3o6n_A 206 AVEELDASHNSIN--------VVRG--PVNVELTILKLQHNNLTDTA--------------------------------- 242 (390)
T ss_dssp SCSEEECCSSCCC--------EEEC--CCCSSCCEEECCSSCCCCCG---------------------------------
T ss_pred cceEEECCCCeee--------eccc--cccccccEEECCCCCCcccH---------------------------------
Confidence 5666666543211 1111 12345555555554432110
Q ss_pred cccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCcccc
Q 000202 1608 YVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTA 1687 (1866)
Q Consensus 1608 ~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~ 1687 (1866)
.++.+++|++|++++| .+..+... ...
T Consensus 243 -------------------------------------------------~l~~l~~L~~L~Ls~n-~l~~~~~~---~~~ 269 (390)
T 3o6n_A 243 -------------------------------------------------WLLNYPGLVEVDLSYN-ELEKIMYH---PFV 269 (390)
T ss_dssp -------------------------------------------------GGGGCTTCSEEECCSS-CCCEEESG---GGT
T ss_pred -------------------------------------------------HHcCCCCccEEECCCC-cCCCcChh---Hcc
Confidence 1345677888888775 44444322 234
Q ss_pred cccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccCcccc
Q 000202 1688 VFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITY 1767 (1866)
Q Consensus 1688 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~ 1767 (1866)
.+++|+.|+++++ +++.+ ......+|+|+.|++++| +++.+++ .+..+++|++|++++|. ++.++
T Consensus 270 ~l~~L~~L~L~~n-~l~~~---~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N~-i~~~~------- 334 (390)
T 3o6n_A 270 KMQRLERLYISNN-RLVAL---NLYGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLK------- 334 (390)
T ss_dssp TCSSCCEEECCSS-CCCEE---ECSSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC-------
T ss_pred ccccCCEEECCCC-cCccc---CcccCCCCCCCEEECCCC-cceecCc--cccccCcCCEEECCCCc-cceeC-------
Confidence 4667777777653 22221 111235678888888887 5666543 35667788888887773 43332
Q ss_pred ccccCCCCcCEEeccCCc
Q 000202 1768 SSCIMLPSLKKLRLHHLP 1785 (1866)
Q Consensus 1768 ~~~~~lp~L~~L~L~~c~ 1785 (1866)
...+++|+.|+|+++|
T Consensus 335 --~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 335 --LSTHHTLKNLTLSHND 350 (390)
T ss_dssp --CCTTCCCSEEECCSSC
T ss_pred --chhhccCCEEEcCCCC
Confidence 3356677777776655
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=209.94 Aligned_cols=291 Identities=18% Similarity=0.145 Sum_probs=191.8
Q ss_pred CCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcC
Q 000202 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443 (1866)
Q Consensus 1364 ~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~ 1443 (1866)
.+...|.+..+++|+.|++++|.+..+| +..+++|+.|++++| .+..+| ++.+++|++|++++|.++.+| ++.
T Consensus 53 ~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N-~l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~ 125 (457)
T 3bz5_A 53 SITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSN-KLTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQ 125 (457)
T ss_dssp CCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSS-CCSCCC---CTTCTTCCEEECCSSCCSCCC--CTT
T ss_pred CcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCC-CCceee---cCCCCcCCEEECCCCcCCeec--CCC
Confidence 3444456778899999999999999886 788999999999988 466665 578999999999999999886 899
Q ss_pred CCCCcEEecccccCcccCCccccCCCCCcEEEccCC-CCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhh
Q 000202 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGT-EIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDI 1522 (1866)
Q Consensus 1444 L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~-~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~ 1522 (1866)
+++|++|++++|.+.+ +| ++++++|++|++++| .+..+ .++.+++|++|+++++. + ..++
T Consensus 126 l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l-----~~l~-------- 186 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-I-----TELD-------- 186 (457)
T ss_dssp CTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-C-----CCCC--------
T ss_pred CCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-c-----ceec--------
Confidence 9999999999998655 44 889999999999999 55566 47889999999987642 1 1111
Q ss_pred hhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEeccccccc
Q 000202 1523 LSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIV 1602 (1866)
Q Consensus 1523 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 1602 (1866)
+..+++|+.|+++.+... .+ .+..+++|+.|+++.|.+..++ ....++|+.|.+.. ..
T Consensus 187 l~~l~~L~~L~l~~N~l~--------~~--~l~~l~~L~~L~Ls~N~l~~ip------~~~l~~L~~L~l~~-N~----- 244 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNNIT--------KL--DLNQNIQLTFLDCSSNKLTEID------VTPLTQLTYFDCSV-NP----- 244 (457)
T ss_dssp CTTCTTCCEEECCSSCCS--------CC--CCTTCTTCSEEECCSSCCSCCC------CTTCTTCSEEECCS-SC-----
T ss_pred cccCCCCCEEECcCCcCC--------ee--ccccCCCCCEEECcCCcccccC------ccccCCCCEEEeeC-Cc-----
Confidence 567888999998854422 12 4778899999999999887643 22334555554421 11
Q ss_pred ccccccccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCC
Q 000202 1603 SWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTK 1682 (1866)
Q Consensus 1603 ~~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~ 1682 (1866)
...+|... ...+..+. -...+|+.|++++|..+..++.
T Consensus 245 ----------------------l~~~~~~~--------------l~~L~~L~----l~~n~L~~L~l~~n~~~~~~~~-- 282 (457)
T 3bz5_A 245 ----------------------LTELDVST--------------LSKLTTLH----CIQTDLLEIDLTHNTQLIYFQA-- 282 (457)
T ss_dssp ----------------------CSCCCCTT--------------CTTCCEEE----CTTCCCSCCCCTTCTTCCEEEC--
T ss_pred ----------------------CCCcCHHH--------------CCCCCEEe----ccCCCCCEEECCCCccCCcccc--
Confidence 11111000 00011110 0124677778888777766652
Q ss_pred Ccccccccccccccccccccccccccc-----cccccccccccEEeEecCccCccccchhhhhhccccceeeeccc
Q 000202 1683 EHTTAVFPSLENLTLNHLWDLTCIWQG-----ILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYC 1753 (1866)
Q Consensus 1683 ~~~~~~f~~L~~L~l~~~~~L~~~~~~-----~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C 1753 (1866)
..+++|+.|+++++..+..+... .+....+++|+.|++++| +|+.+ + +.++++|+.|+++++
T Consensus 283 ----~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l-~---l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 283 ----EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTEL-D---VSHNTKLKSLSCVNA 349 (457)
T ss_dssp ----TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCC-C---CTTCTTCSEEECCSS
T ss_pred ----cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-ccccc-c---cccCCcCcEEECCCC
Confidence 34789999999988765543210 011123344444444444 34433 1 344555666665554
|
| >2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-19 Score=188.43 Aligned_cols=100 Identities=19% Similarity=0.262 Sum_probs=90.9
Q ss_pred CCCCccEEEccccccccCchHHHHHHHHhhC--CCceEeeC-CCCCCCCCchhHHHHhh-hcceEEEEeccCcccchhhH
Q 000202 12 DKKMYDVFLSFRGEDTRDNFTSHLYSALCQN--NVETFIDN-DLKRGDEIPESLLGTIE-ASTISIIIFSEKYASSKWCL 87 (1866)
Q Consensus 12 ~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~-~s~~~i~v~S~~y~~s~~c~ 87 (1866)
..+.|||||||+++| ..||.+|+++|+++ |+++|+|+ |+.+|+.+.++|.+||+ +|+++|+|+|++|+.|.||+
T Consensus 13 ~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~ 90 (160)
T 2js7_A 13 MPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD 90 (160)
T ss_dssp CTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred CCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence 468899999999999 57999999999985 69999998 99999999999999999 79999999999999999999
Q ss_pred HHHHHHHHHH-hhCCCEEEEEEEEecC
Q 000202 88 DELLKILECK-RNYGQIVIPVFYRVDP 113 (1866)
Q Consensus 88 ~El~~~~~~~-~~~~~~v~pvf~~v~p 113 (1866)
.|+..|+.+. ++++++||||||+.-+
T Consensus 91 ~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 91 FQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 9999999875 4455689999998653
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.7e-17 Score=207.71 Aligned_cols=295 Identities=21% Similarity=0.225 Sum_probs=214.6
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~ 1451 (1866)
++++.|++++|.+..++ .+..+++|+.|+|++| .+..+++..|+++++|++|+|++|.+..+|. .++++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 57899999999999775 4788999999999988 6777766667899999999999999999986 478999999999
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCcC-ChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCc
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALE 1530 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~ 1530 (1866)
|++|.+....|..+.++++|++|++++|.+..+ |..+.++++|++|++..+.- . .++...+..+++|+
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l------~-----~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL------T-----SIPTEALSHLHGLI 179 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC------S-----SCCHHHHTTCTTCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC------c-----ccChhHhcccCCCc
Confidence 999998888889999999999999999999976 55799999999999976421 1 12345678899999
Q ss_pred EeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc-hHHhhccCccccCCcceeEEEEecccccccccccccc
Q 000202 1531 TLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC-VAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYV 1609 (1866)
Q Consensus 1531 ~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 1609 (1866)
.|+++.+... ......+..+++|+.|+++.|.... ++. ......+|+.|.+
T Consensus 180 ~L~l~~n~i~-------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l----------------- 231 (477)
T 2id5_A 180 VLRLRHLNIN-------AIRDYSFKRLYRLKVLEISHWPYLDTMTP----NCLYGLNLTSLSI----------------- 231 (477)
T ss_dssp EEEEESCCCC-------EECTTCSCSCTTCCEEEEECCTTCCEECT----TTTTTCCCSEEEE-----------------
T ss_pred EEeCCCCcCc-------EeChhhcccCcccceeeCCCCccccccCc----ccccCccccEEEC-----------------
Confidence 9999864432 1233467889999999998875321 111 1111123443333
Q ss_pred cccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCcccccc
Q 000202 1610 QCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVF 1689 (1866)
Q Consensus 1610 ~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f 1689 (1866)
....+..+|... +..+++|+.|+++++ .+..+... ....+
T Consensus 232 -----------~~n~l~~~~~~~-------------------------~~~l~~L~~L~Ls~n-~l~~~~~~---~~~~l 271 (477)
T 2id5_A 232 -----------THCNLTAVPYLA-------------------------VRHLVYLRFLNLSYN-PISTIEGS---MLHEL 271 (477)
T ss_dssp -----------ESSCCCSCCHHH-------------------------HTTCTTCCEEECCSS-CCCEECTT---SCTTC
T ss_pred -----------cCCcccccCHHH-------------------------hcCccccCeeECCCC-cCCccChh---hcccc
Confidence 222233444322 356788888888885 45555433 33557
Q ss_pred cccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeecccc
Q 000202 1690 PSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCL 1754 (1866)
Q Consensus 1690 ~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~ 1754 (1866)
++|+.|+++++. ++.+. ......+++|+.|++++| +++.+++ ..+..+++|++|++++++
T Consensus 272 ~~L~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 272 LRLQEIQLVGGQ-LAVVE--PYAFRGLNYLRVLNVSGN-QLTTLEE-SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TTCCEEECCSSC-CSEEC--TTTBTTCTTCCEEECCSS-CCSCCCG-GGBSCGGGCCEEECCSSC
T ss_pred ccCCEEECCCCc-cceEC--HHHhcCcccCCEEECCCC-cCceeCH-hHcCCCcccCEEEccCCC
Confidence 888888887642 22211 112235788999999888 7777654 456778889999998764
|
| >1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-19 Score=189.14 Aligned_cols=100 Identities=19% Similarity=0.334 Sum_probs=90.3
Q ss_pred CCCCccEEEccccccccCchHHH-HHHHHhhC--CCceEeeC-CCCCCCCCchhHHHHhhhcceEEEEeccCcccchhhH
Q 000202 12 DKKMYDVFLSFRGEDTRDNFTSH-LYSALCQN--NVETFIDN-DLKRGDEIPESLLGTIEASTISIIIFSEKYASSKWCL 87 (1866)
Q Consensus 12 ~~~~~dvFis~~~~d~~~~~~~~-l~~~L~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~ 87 (1866)
..+.|||||||+++|+ .||.+ |+++|+++ |+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|++|+.|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 3578999999999995 79997 99999987 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-hhCCCEEEEEEEE-ecC
Q 000202 88 DELLKILECK-RNYGQIVIPVFYR-VDP 113 (1866)
Q Consensus 88 ~El~~~~~~~-~~~~~~v~pvf~~-v~p 113 (1866)
.|+..|+.+. ++++.+||||||+ +++
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~ 107 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEK 107 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCT
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCCh
Confidence 9999988643 5567789999986 444
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-17 Score=216.21 Aligned_cols=397 Identities=17% Similarity=0.155 Sum_probs=236.8
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEeccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRD 1454 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~ 1454 (1866)
..+.+++++|.++.+|... .++|+.|++++| .+..+++..++.+++|++|+|++|.++.+ |..++++++|++|+|++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL-PPRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS-CTTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCcEEEcCCCCCccCCCCC-CCCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 3478999999999999533 389999999988 67788877779999999999999999977 67899999999999999
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCC--hhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccC--c
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLP--KEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQAL--E 1530 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L--~ 1530 (1866)
|.+ ..+|.. .+++|++|++++|.++.+| ..++++++|++|++++.. + ....+..+++| +
T Consensus 110 N~l-~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l-------------~~~~~~~l~~L~L~ 172 (562)
T 3a79_B 110 NRL-QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-F-------------RQLDLLPVAHLHLS 172 (562)
T ss_dssp SCC-CEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-C-------------CTTTTGGGTTSCEE
T ss_pred CcC-CccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-c-------------ccCchhhhhhceee
Confidence 995 478877 8999999999999999764 789999999999997632 1 11124455555 8
Q ss_pred EeecccCCC--CCcccccc-------------------ccccccccCCCCCCEEEeecCCcc--chHHhhccCccccCCc
Q 000202 1531 TLSIDVHPG--DKRWDKDV-------------------KIVITEVSGLTKLSSLSFHFPEIE--CVAEFLKGSAWNNQQL 1587 (1866)
Q Consensus 1531 ~L~l~~~~~--~~~~~~~~-------------------~~~~~~l~~l~~L~~L~l~~~~l~--~~~~~~~~~~~~~~~L 1587 (1866)
.|+++.+.. ........ ......+..+++|+.|+++.|... .+...+. .....+.+
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~-~l~~l~~L 251 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS-ELTRGPTL 251 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHH-HHHSCSSC
T ss_pred EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHH-HHhccCcc
Confidence 888876543 11000000 001122345667777787776421 1111111 11123445
Q ss_pred ceeEEEEecccccccccccccccccccCccceeEeecCC-CCChHHHHHH-Hhhcceecccc--cCceecCCCCccc---
Q 000202 1588 TEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGK-NVPPEVIQIL-IHSTAFYVDHH--LSIVSLSDFGVGY--- 1660 (1866)
Q Consensus 1588 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~p~~~~~~l-~~~~~l~~~~~--~~l~~L~~~~l~~--- 1660 (1866)
+.+.+....-.......+...... .....+.+...... .+|.+.+... ..+..+...+. ..+ .++...+..
T Consensus 252 ~~L~L~~~~l~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~ 329 (562)
T 3a79_B 252 LNVTLQHIETTWKCSVKLFQFFWP-RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFA 329 (562)
T ss_dssp EEEEEEEEEECHHHHHHHHHHHTT-SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHH
T ss_pred eEEEecCCcCcHHHHHHHHHhhhc-ccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhc
Confidence 555443211100000000000000 01222333333322 3333210000 00111110000 000 111000000
Q ss_pred ccCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccc-hhhh
Q 000202 1661 MSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFT-CSMI 1739 (1866)
Q Consensus 1661 l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~-~~~l 1739 (1866)
.++|+.|.+++|.-. .+. ....+++|+.|+++++. ++... ....+.+++|+.|++++| +++.++. ...+
T Consensus 330 ~~~L~~L~l~~n~~~-~~~-----~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 399 (562)
T 3a79_B 330 EMNIKMLSISDTPFI-HMV-----CPPSPSSFTFLNFTQNV-FTDSV--FQGCSTLKRLQTLILQRN-GLKNFFKVALMT 399 (562)
T ss_dssp TCCCSEEEEESSCCC-CCC-----CCSSCCCCCEEECCSSC-CCTTT--TTTCCSCSSCCEEECCSS-CCCBTTHHHHTT
T ss_pred cCcceEEEccCCCcc-ccc-----CccCCCCceEEECCCCc-cccch--hhhhcccCCCCEEECCCC-CcCCcccchhhh
Confidence 145888888876432 211 11457899999998753 22211 111246899999999998 7777643 2346
Q ss_pred hhccccceeeeccccccce-ecccCccccccccCCCCcCEEeccCCccccccccCCC-CCccEEEEEcCccccccC
Q 000202 1740 QFLAKLEELTVEYCLAVKS-IILDGEITYSSCIMLPSLKKLRLHHLPELANIWRNDW-PSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1740 ~~L~sLe~L~I~~C~~L~~-l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~~~~l-psLe~L~I~~Cp~L~~lp 1813 (1866)
.++++|++|++++|. +.. ++. ..+..+++|+.|+|+++. +.......+ ++|++|++++| +++.+|
T Consensus 400 ~~l~~L~~L~l~~N~-l~~~~~~------~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~~L~~L~L~~N-~l~~ip 466 (562)
T 3a79_B 400 KNMSSLETLDVSLNS-LNSHAYD------RTCAWAESILVLNLSSNM-LTGSVFRCLPPKVKVLDLHNN-RIMSIP 466 (562)
T ss_dssp TTCTTCCEEECTTSC-CBSCCSS------CCCCCCTTCCEEECCSSC-CCGGGGSSCCTTCSEEECCSS-CCCCCC
T ss_pred cCCCCCCEEECCCCc-CCCccCh------hhhcCcccCCEEECCCCC-CCcchhhhhcCcCCEEECCCC-cCcccC
Confidence 789999999999985 433 432 124578999999999987 433222334 79999999998 676665
|
| >1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-18 Score=183.33 Aligned_cols=100 Identities=23% Similarity=0.291 Sum_probs=89.7
Q ss_pred CCccEEEccccccc---------cCchHHHHHH-HHh-hCCCceEeeC-CCCCCCCCchhHHHHhhhcceEEEEeccCcc
Q 000202 14 KMYDVFLSFRGEDT---------RDNFTSHLYS-ALC-QNNVETFIDN-DLKRGDEIPESLLGTIEASTISIIIFSEKYA 81 (1866)
Q Consensus 14 ~~~dvFis~~~~d~---------~~~~~~~l~~-~L~-~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~ 81 (1866)
+.|||||||+++|+ ++.||.|+.. .|+ +.|+++|+|+ |+.+|+.|.++|.+||++||++|+|+|+||+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 4679999776 699 7999999999 9999999999999999999999999999997
Q ss_pred -cchhhHHHHHHHHHHH-hhCCCEEEEEEEEecC
Q 000202 82 -SSKWCLDELLKILECK-RNYGQIVIPVFYRVDP 113 (1866)
Q Consensus 82 -~s~~c~~El~~~~~~~-~~~~~~v~pvf~~v~p 113 (1866)
.|.||..|+..|+.+. ++++.+||||||.-.+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999987 6678899999976443
|
| >2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.9e-19 Score=189.40 Aligned_cols=99 Identities=18% Similarity=0.355 Sum_probs=86.0
Q ss_pred CCCCCCccEEEccccccccCchHHH-HHHHHhh--CCCceEeeC-CCCCCCCCchhHHHHhhhcceEEEEeccCcccchh
Q 000202 10 RNDKKMYDVFLSFRGEDTRDNFTSH-LYSALCQ--NNVETFIDN-DLKRGDEIPESLLGTIEASTISIIIFSEKYASSKW 85 (1866)
Q Consensus 10 ~~~~~~~dvFis~~~~d~~~~~~~~-l~~~L~~--~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~ 85 (1866)
....+.|||||||+++|+ .||.+ |+++|++ +|+++|+|+ |+.+|+.|.++|.+||++||++|+|+|+||+.|.|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 346689999999999994 79975 9999998 899999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH-hhCCCEEEEEEEE
Q 000202 86 CLDELLKILECK-RNYGQIVIPVFYR 110 (1866)
Q Consensus 86 c~~El~~~~~~~-~~~~~~v~pvf~~ 110 (1866)
|+.|+..|+.+. ++++++||||||+
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~ 133 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLE 133 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 999999999654 5567789999986
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-16 Score=199.29 Aligned_cols=344 Identities=16% Similarity=0.163 Sum_probs=228.7
Q ss_pred CCCccccccCcEEEccCCCCC-CCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCC-CChh--h
Q 000202 1368 PPSEEEWTHAKMIFFMDNDLQ-TLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKS-LPET--L 1441 (1866)
Q Consensus 1368 ~~~~~~~~~l~~l~l~~~~l~-~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~-lp~~--i 1441 (1866)
+..+..+++|+.|++++|.+. .++ .+..+++|++|+|++| .+..+++..++.+++|++|+|++|.++. .|.. +
T Consensus 47 ~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 125 (455)
T 3v47_A 47 ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF 125 (455)
T ss_dssp TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTT
T ss_pred hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEEeCCCCCCCccccCcccc
Confidence 345778999999999999886 454 3678999999999988 4566655556889999999999999985 4554 8
Q ss_pred cCCCCCcEEecccccCcccCCcc-ccCCCCCcEEEccCCCCCcC-ChhhcCC--CccceeccccccccCCCccccCCCCC
Q 000202 1442 VNLKCLQILILRDCDFLFVLPPE-VGSLECLEVLDLRGTEIKML-PKEIGKL--TSLRYLTVFFFGSMYKSEYIKLPPDL 1517 (1866)
Q Consensus 1442 ~~L~~L~~L~L~~~~~~~~lP~~-i~~L~~L~~L~l~~~~i~~l-p~~i~~L--~~L~~L~l~~~~~~~~~~~~~l~~~~ 1517 (1866)
+++++|++|+|++|.+.+..|.. ++++++|++|++++|.+..+ |..++++ .+|+.|++..+.- ..++...
T Consensus 126 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l------~~~~~~~ 199 (455)
T 3v47_A 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL------QDMNEYW 199 (455)
T ss_dssp TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBC------TTCSTTC
T ss_pred cCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcc------cccchhh
Confidence 99999999999999988777876 89999999999999999866 5556666 6788888765431 2222221
Q ss_pred CChh---hhhccccCcEeecccCCCCCccccccccccccc---cCCCCCCEEEeecCCccchHHhhccCccccCCcceeE
Q 000202 1518 ISSD---ILSRLQALETLSIDVHPGDKRWDKDVKIVITEV---SGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFK 1591 (1866)
Q Consensus 1518 ~~~~---~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~ 1591 (1866)
+... .+..+++|+.|+++.+.... ..+..+ ...++|+.|+++.+...... .....+....
T Consensus 200 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~-------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------~~~~~~~~~~ 265 (455)
T 3v47_A 200 LGWEKCGNPFKNTSITTLDLSGNGFKE-------SMAKRFFDAIAGTKIQSLILSNSYNMGSS-------FGHTNFKDPD 265 (455)
T ss_dssp TTHHHHCCTTTTCEEEEEECTTSCCCH-------HHHHHHHHHTTTCCEEEEECTTCTTTSCC-------TTCCSSCCCC
T ss_pred ccccccccccccceeeeEecCCCcccc-------cchhhhhccccccceeeEeeccccccccc-------cchhhhccCc
Confidence 1111 13456789999998654321 122222 23478999999877543210 0000010000
Q ss_pred EEEecccccccccccccccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecc
Q 000202 1592 FVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISE 1671 (1866)
Q Consensus 1592 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~ 1671 (1866)
...+.. .....++.+ .+. ...+..+....++.+++|+.|++++
T Consensus 266 ------~~~~~~-----------~~~~~L~~L-------------------~l~-~n~l~~~~~~~~~~l~~L~~L~Ls~ 308 (455)
T 3v47_A 266 ------NFTFKG-----------LEASGVKTC-------------------DLS-KSKIFALLKSVFSHFTDLEQLTLAQ 308 (455)
T ss_dssp ------TTTTGG-----------GTTSCCCEE-------------------ECC-SSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ------cccccc-----------ccccCceEE-------------------Eec-CccccccchhhcccCCCCCEEECCC
Confidence 000000 000111111 111 1123333333467899999999998
Q ss_pred cCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeec
Q 000202 1672 CLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVE 1751 (1866)
Q Consensus 1672 c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~ 1751 (1866)
| .+..+... ....+++|+.|+++++. ++.+. ....+.+++|+.|++++| +++.+++ ..+.++++|++|+++
T Consensus 309 n-~l~~~~~~---~~~~l~~L~~L~Ls~N~-l~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 309 N-EINKIDDN---AFWGLTHLLKLNLSQNF-LGSID--SRMFENLDKLEVLDLSYN-HIRALGD-QSFLGLPNLKELALD 379 (455)
T ss_dssp S-CCCEECTT---TTTTCTTCCEEECCSSC-CCEEC--GGGGTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECC
T ss_pred C-cccccChh---HhcCcccCCEEECCCCc-cCCcC--hhHhcCcccCCEEECCCC-cccccCh-hhccccccccEEECC
Confidence 5 45555432 33568999999998762 33211 111246899999999999 6777644 467789999999999
Q ss_pred cccccceecccCccccccccCCCCcCEEeccCCc
Q 000202 1752 YCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLP 1785 (1866)
Q Consensus 1752 ~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~ 1785 (1866)
+| .++.++.. .+..+++|+.|+|++++
T Consensus 380 ~N-~l~~~~~~------~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 380 TN-QLKSVPDG------IFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp SS-CCSCCCTT------TTTTCTTCCEEECCSSC
T ss_pred CC-ccccCCHh------HhccCCcccEEEccCCC
Confidence 97 56666522 24578999999999887
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-15 Score=185.90 Aligned_cols=121 Identities=23% Similarity=0.311 Sum_probs=82.7
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEeccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRD 1454 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~ 1454 (1866)
+++.++++++.+..+|... .++++.|++++| .+..+++..++.+++|++|+|++|.+..+ |..++.+++|++|+|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 5677777777777776422 256777777766 46666665557777777777777777765 66777777777777777
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceecccc
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~ 1501 (1866)
|.+ ..+|..+. ++|++|++++|.++.+|.. ++++++|++|++..
T Consensus 110 n~l-~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 154 (330)
T 1xku_A 110 NQL-KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154 (330)
T ss_dssp SCC-SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred CcC-CccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCC
Confidence 763 45666554 6777777777777766543 66777777776654
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=9.4e-16 Score=205.05 Aligned_cols=148 Identities=24% Similarity=0.259 Sum_probs=120.0
Q ss_pred cEEEccCCCCCCCCCCCCC-CcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEecccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSC-PNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~-~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~ 1455 (1866)
.+.+.++..+..+|. .+ +++++|+|++| .+..+|+..|.++++|++|+|++|.|+.+|+ .|.+|++|++|+|++|
T Consensus 34 ~~~~c~~~~l~~vP~--~lp~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 34 ITYQCMELNFYKIPD--NLPFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp TEEECTTSCCSSCCS--SSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCCcCccCC--CCCcCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 456677778888884 23 47999999998 6889998888999999999999999999875 6899999999999999
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeec
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l 1534 (1866)
++.+..|..|++|++|++|++++|.++.+|.. +++|++|++|+++++.- .... .+..+..+++|+.|++
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l----~~~~------~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI----QSFK------LPEYFSNLTNLEHLDL 180 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC----CCCC------CCGGGGGCTTCCEEEC
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcc----ccCC------Cchhhccchhhhhhcc
Confidence 96554456789999999999999999999865 89999999999976421 1011 1234677888999988
Q ss_pred ccCC
Q 000202 1535 DVHP 1538 (1866)
Q Consensus 1535 ~~~~ 1538 (1866)
+.+.
T Consensus 181 ~~N~ 184 (635)
T 4g8a_A 181 SSNK 184 (635)
T ss_dssp CSSC
T ss_pred cCcc
Confidence 8654
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=7e-16 Score=187.85 Aligned_cols=89 Identities=12% Similarity=0.014 Sum_probs=54.5
Q ss_pred ccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCcccc-ccc--
Q 000202 1715 SFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELA-NIW-- 1791 (1866)
Q Consensus 1715 ~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~-~i~-- 1791 (1866)
.+++|+.|++++| +++.+|. .+..+++|++|++++| .++.++...-........+++|+.|++.++|-.. .+.
T Consensus 239 ~l~~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~ 314 (332)
T 2ft3_A 239 FLPTLRELHLDNN-KLSRVPA--GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314 (332)
T ss_dssp GCTTCCEEECCSS-CCCBCCT--TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG
T ss_pred CCCCCCEEECCCC-cCeecCh--hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcc
Confidence 4678888888888 6776644 4677888999999887 4666543221110111236788999998887331 221
Q ss_pred -cCCCCCccEEEEEcCc
Q 000202 1792 -RNDWPSLEYISFYGCP 1807 (1866)
Q Consensus 1792 -~~~lpsLe~L~I~~Cp 1807 (1866)
...+++|+.|++++|.
T Consensus 315 ~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 315 TFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGTTBCCSTTEEC----
T ss_pred cccccchhhhhhccccc
Confidence 1356788888887774
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-16 Score=189.16 Aligned_cols=175 Identities=23% Similarity=0.293 Sum_probs=145.2
Q ss_pred cccCcEEEccCCCCCCCCC-CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEec
Q 000202 1374 WTHAKMIFFMDNDLQTLPG-RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILIL 1452 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~~l~~-~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L 1452 (1866)
..+++.|++.+|.+..+|. +..+++|++|+|++| .+..+|..+ +.+++|++|+|++|.+..+|..++++++|++|+|
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 4678999999999999985 677999999999988 455888776 7899999999999999999999999999999999
Q ss_pred ccccCcccCCccccC---------CCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhh
Q 000202 1453 RDCDFLFVLPPEVGS---------LECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDIL 1523 (1866)
Q Consensus 1453 ~~~~~~~~lP~~i~~---------L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l 1523 (1866)
++|..++.+|..++. +++|++|++++|.++.+|..++++++|++|+++++.- ..++. .+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l------~~l~~------~l 225 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL------SALGP------AI 225 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCC------CCCCG------GG
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCC------CcCch------hh
Confidence 999999999988765 9999999999999999999999999999999976421 12221 36
Q ss_pred hccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCC
Q 000202 1524 SRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPE 1569 (1866)
Q Consensus 1524 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1569 (1866)
..+++|+.|+++.|... ..++..+..+++|+.|+++.|.
T Consensus 226 ~~l~~L~~L~Ls~n~~~-------~~~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTAL-------RNYPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp GGCTTCCEEECTTCTTC-------CBCCCCTTCCCCCCEEECTTCT
T ss_pred ccCCCCCEEECcCCcch-------hhhHHHhcCCCCCCEEECCCCC
Confidence 77888888888854332 2355667778888888877654
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-16 Score=198.29 Aligned_cols=166 Identities=19% Similarity=0.199 Sum_probs=81.7
Q ss_pred CccccccCcEEEccCCCCC-CCCC-CCCCCc-------------ccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCC
Q 000202 1370 SEEEWTHAKMIFFMDNDLQ-TLPG-RPSCPN-------------LLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRI 1434 (1866)
Q Consensus 1370 ~~~~~~~l~~l~l~~~~l~-~l~~-~~~~~~-------------L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i 1434 (1866)
.+..+++|+.|++++|.+. .+|. +..+++ ++.|++++| .+..+|. ..++|++|++++|.+
T Consensus 29 ~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~----~~~~L~~L~l~~n~l 103 (454)
T 1jl5_A 29 EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPE----LPPHLESLVASCNSL 103 (454)
T ss_dssp -----CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCS----CCTTCSEEECCSSCC
T ss_pred hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCC----CcCCCCEEEccCCcC
Confidence 3444555555555555443 3332 233333 255555544 3444443 124566666666665
Q ss_pred CCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCC
Q 000202 1435 KSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLP 1514 (1866)
Q Consensus 1435 ~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~ 1514 (1866)
+.+|.. +.+|++|++++|.+. .+|.. .++|++|++++|.++.+| .++++++|++|+++++. ...+|
T Consensus 104 ~~lp~~---~~~L~~L~l~~n~l~-~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~------l~~lp 169 (454)
T 1jl5_A 104 TELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS------LKKLP 169 (454)
T ss_dssp SSCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC------CSCCC
T ss_pred Cccccc---cCCCcEEECCCCccC-cccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc------CcccC
Confidence 555532 255666666666532 23321 146666666666666666 46666666666665431 11122
Q ss_pred CCCCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1515 PDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1515 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
. ...+|+.|+++.+.. ..++ .+..+++|+.|+++.|.+..
T Consensus 170 ~---------~~~~L~~L~L~~n~l--------~~l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 170 D---------LPPSLEFIAAGNNQL--------EELP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp C---------CCTTCCEEECCSSCC--------SSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred C---------CcccccEEECcCCcC--------CcCc-cccCCCCCCEEECCCCcCCc
Confidence 1 123566666664321 1122 45666677777776666554
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-16 Score=188.20 Aligned_cols=135 Identities=22% Similarity=0.348 Sum_probs=73.9
Q ss_pred CCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccc
Q 000202 1421 MTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVF 1500 (1866)
Q Consensus 1421 l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 1500 (1866)
..++++|+|++|.+..+|..++++++|++|+|++|.+. .+|..++++++|++|++++|.++.+|..++++++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 35566666666666666666666666666666666644 56666666666666666666666666666666666666665
Q ss_pred cccccCCCccccCCCCCC---ChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCC
Q 000202 1501 FFGSMYKSEYIKLPPDLI---SSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPE 1569 (1866)
Q Consensus 1501 ~~~~~~~~~~~~l~~~~~---~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1569 (1866)
+|..... +|.... ....+.++++|+.|+++.+. ...++..+..+++|+.|+++.|.
T Consensus 159 ~n~~~~~-----~p~~~~~~~~~~~~~~l~~L~~L~L~~n~--------l~~lp~~l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 159 ACPELTE-----LPEPLASTDASGEHQGLVNLQSLRLEWTG--------IRSLPASIANLQNLKSLKIRNSP 217 (328)
T ss_dssp EETTCCC-----CCSCSEEEC-CCCEEESTTCCEEEEEEEC--------CCCCCGGGGGCTTCCEEEEESSC
T ss_pred CCCCccc-----cChhHhhccchhhhccCCCCCEEECcCCC--------cCcchHhhcCCCCCCEEEccCCC
Confidence 5432211 111000 00113345566666655322 11244455566666666665554
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=190.79 Aligned_cols=163 Identities=21% Similarity=0.260 Sum_probs=123.6
Q ss_pred ccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEeccc
Q 000202 1375 THAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRD 1454 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 1454 (1866)
++++.|++++|.+..+|.. +++|+.|++++| .+..+|.. .++|++|++++|.++.+| +++++++|++|++++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n-~l~~l~~~----~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL--PQSLKSLLVDNN-NLKALSDL----PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC--CTTCCEEECCSS-CCSCCCSC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS
T ss_pred CCCCEEEccCCcCCccccc--cCCCcEEECCCC-ccCcccCC----CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCC
Confidence 5789999999999888853 478999999887 55555531 268999999999999888 599999999999999
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeec
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l 1534 (1866)
|.+. .+|..+ .+|++|++++|.++.+| .++++++|++|++.++. ...+|. ..++|+.|++
T Consensus 163 N~l~-~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~------l~~l~~---------~~~~L~~L~l 222 (454)
T 1jl5_A 163 NSLK-KLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS------LKKLPD---------LPLSLESIVA 222 (454)
T ss_dssp SCCS-CCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC------CSSCCC---------CCTTCCEEEC
T ss_pred CcCc-ccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc------CCcCCC---------CcCcccEEEC
Confidence 9854 477543 58999999999999888 68999999999886542 112222 1247888888
Q ss_pred ccCCCCCccccccccccccccCCCCCCEEEeecCCccchH
Q 000202 1535 DVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVA 1574 (1866)
Q Consensus 1535 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 1574 (1866)
+.+.. ..++ .+..+++|+.|+++.|.+..++
T Consensus 223 ~~n~l--------~~lp-~~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 223 GNNIL--------EELP-ELQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp CSSCC--------SSCC-CCTTCTTCCEEECCSSCCSSCC
T ss_pred cCCcC--------Cccc-ccCCCCCCCEEECCCCcCCccc
Confidence 75432 2233 4778899999999988876543
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=184.82 Aligned_cols=122 Identities=21% Similarity=0.324 Sum_probs=94.5
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEeccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRD 1454 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~ 1454 (1866)
+++.++++++.+..+|... .++|+.|++++| .+..+++..+..+++|++|+|++|.++.+ |..++++++|++|+|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 5778888888888887432 367888888877 56677666668888888888888888866 67788888888888888
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccc
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFF 1502 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~ 1502 (1866)
|.+ ..+|..+. ++|++|++++|.++.+|.. ++++++|++|++.++
T Consensus 112 n~l-~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 112 NHL-VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp SCC-CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC
T ss_pred CcC-CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC
Confidence 874 46776665 7888888888888887654 788888888887653
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=187.84 Aligned_cols=179 Identities=22% Similarity=0.245 Sum_probs=131.2
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEeccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRD 1454 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~ 1454 (1866)
.....+++++.+..+|.. -.++|+.|++++| .+..+|...+..+++|++|+|++|.++.++ ..++++++|++|+|++
T Consensus 32 ~~~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSG-LTEAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp TTSEEECCSTTCSSCCTT-CCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCeEeeCCCCCccccccc-ccccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 334577788888888852 2358999999887 577788766788999999999999988764 5688999999999999
Q ss_pred ccCcccCCcc-ccCCCCCcEEEccCCCCCcCCh--hhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcE
Q 000202 1455 CDFLFVLPPE-VGSLECLEVLDLRGTEIKMLPK--EIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALET 1531 (1866)
Q Consensus 1455 ~~~~~~lP~~-i~~L~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~ 1531 (1866)
|.+. .+|.. ++++++|++|++++|.++.+|. .++++++|++|++.++..... + ....+.++++|+.
T Consensus 110 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~-----~-----~~~~~~~l~~L~~ 178 (353)
T 2z80_A 110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK-----I-----QRKDFAGLTFLEE 178 (353)
T ss_dssp SCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE-----E-----CTTTTTTCCEEEE
T ss_pred CcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc-----c-----CHHHccCCCCCCE
Confidence 9865 45544 8889999999999999998887 688899999998876432211 1 1123567788888
Q ss_pred eecccCCCCCccccccccccccccCCCCCCEEEeecCCccchH
Q 000202 1532 LSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVA 1574 (1866)
Q Consensus 1532 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 1574 (1866)
|+++.+... ...+..+..+++|+.|+++.|.+..++
T Consensus 179 L~l~~n~l~-------~~~~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 179 LEIDASDLQ-------SYEPKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp EEEEETTCC-------EECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred EECCCCCcC-------ccCHHHHhccccCCeecCCCCccccch
Confidence 888754322 123556677788888888777655443
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.8e-15 Score=192.97 Aligned_cols=155 Identities=23% Similarity=0.183 Sum_probs=118.1
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~ 1455 (1866)
+++.+++++|.+..+|.... ++|+.|+|++| .+..+|. .+++|++|+|++|.++.+|. .+++|++|+|++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSC-CCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 57889999999999886333 79999999988 5778886 47899999999999999987 7899999999999
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecc
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSID 1535 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~ 1535 (1866)
.+ ..+|. .+.+|++|++++|.++.+|.. +++|++|+++++. +..++. .+.+|+.|+++
T Consensus 112 ~l-~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~------l~~l~~---------~~~~L~~L~L~ 169 (622)
T 3g06_A 112 PL-THLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ------LASLPA---------LPSELCKLWAY 169 (622)
T ss_dssp CC-CCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC------CSCCCC---------CCTTCCEEECC
T ss_pred cC-CCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc------CCCcCC---------ccCCCCEEECC
Confidence 84 45676 678899999999999999875 4889999887642 112221 24577888877
Q ss_pred cCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1536 VHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1536 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
.+.. ..++ ..+++|+.|+++.|.+..
T Consensus 170 ~N~l--------~~l~---~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 170 NNQL--------TSLP---MLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp SSCC--------SCCC---CCCTTCCEEECCSSCCSC
T ss_pred CCCC--------CCCc---ccCCCCcEEECCCCCCCC
Confidence 4332 2223 446788888888877654
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-14 Score=175.27 Aligned_cols=174 Identities=24% Similarity=0.347 Sum_probs=136.6
Q ss_pred ccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEec
Q 000202 1375 THAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILIL 1452 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L 1452 (1866)
+.++.|++++|.+..++. +..+++|++|++++| .+..+++..++.+++|++|+|++|.++.+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEEC
Confidence 578999999999998874 778999999999988 5666655556889999999999999999998775 79999999
Q ss_pred ccccCcccCCccccCCCCCcEEEccCCCCC---cCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccC
Q 000202 1453 RDCDFLFVLPPEVGSLECLEVLDLRGTEIK---MLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQAL 1529 (1866)
Q Consensus 1453 ~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~---~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L 1529 (1866)
++|.+....|..++++++|++|++++|.+. ..|..+.++++|++|++.++. ...+|.. -.++|
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~------l~~l~~~--------~~~~L 194 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN------ITTIPQG--------LPPSL 194 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC------CCSCCSS--------CCTTC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc------cccCCcc--------ccccC
Confidence 999987776778999999999999999987 346678999999999986542 1223321 12678
Q ss_pred cEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1530 ETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1530 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
+.|+++.+... ...+..+..+++|+.|+++.|.+..
T Consensus 195 ~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 195 TELHLDGNKIT-------KVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp SEEECTTSCCC-------EECTGGGTTCTTCCEEECCSSCCCE
T ss_pred CEEECCCCcCC-------ccCHHHhcCCCCCCEEECCCCcCce
Confidence 88888754322 1234567788888888888776543
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-15 Score=179.07 Aligned_cols=103 Identities=20% Similarity=0.257 Sum_probs=61.5
Q ss_pred cccEEEccCCcCCc--ccChhHHhcCCCCcEEEccC-CCCC-CCChhhcCCCCCcEEecccccCcccCCccccCCCCCcE
Q 000202 1398 NLLTLFLQRNCRLR--VIPPSFFELMTSLKVLNLSK-TRIK-SLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEV 1473 (1866)
Q Consensus 1398 ~L~~L~L~~~~~l~--~~p~~~~~~l~~L~~L~Ls~-~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~ 1473 (1866)
+++.|+|++|.... .+|..+ +.+++|++|+|++ |.+. .+|..++++++|++|+|++|.+.+.+|..++++++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 45556666553333 455443 5566666666663 5554 55666666666666666666655566666666666666
Q ss_pred EEccCCCCC-cCChhhcCCCccceecccc
Q 000202 1474 LDLRGTEIK-MLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1474 L~l~~~~i~-~lp~~i~~L~~L~~L~l~~ 1501 (1866)
|++++|.++ .+|..++++++|++|++++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 158 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDG 158 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence 666666665 4566666666666665543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-16 Score=206.69 Aligned_cols=385 Identities=14% Similarity=0.027 Sum_probs=228.2
Q ss_pred ccccCcEEEccCCCCCCC--CCCCC-CCc-ccEEEccCCcCCccc-ChhHHhcCCCCcEEEccCCCCCC-----CChhhc
Q 000202 1373 EWTHAKMIFFMDNDLQTL--PGRPS-CPN-LLTLFLQRNCRLRVI-PPSFFELMTSLKVLNLSKTRIKS-----LPETLV 1442 (1866)
Q Consensus 1373 ~~~~l~~l~l~~~~l~~l--~~~~~-~~~-L~~L~L~~~~~l~~~-p~~~~~~l~~L~~L~Ls~~~i~~-----lp~~i~ 1442 (1866)
.+++|+.|++++|.+... ..+.. +++ |+.|+|++|..+... ...+...+++|++|+|++|.+.. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 567899999999876521 12222 444 999999988532211 12234578999999999998652 445567
Q ss_pred CCCCCcEEecccccCc----ccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCC
Q 000202 1443 NLKCLQILILRDCDFL----FVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLI 1518 (1866)
Q Consensus 1443 ~L~~L~~L~L~~~~~~----~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~ 1518 (1866)
.+++|++|+|++|.+. ..++..+.++++|++|++++|.+..+|..++++++|++|.+..+...... ...
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~----- 262 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGM--PEK----- 262 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTC--TTS-----
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccch--HHH-----
Confidence 8899999999999865 34566677899999999999999999999999999999998753221100 000
Q ss_pred ChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEeccc
Q 000202 1519 SSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDV 1598 (1866)
Q Consensus 1519 ~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 1598 (1866)
...+..+++|+.|++.... ...++..+..+++|++|++++|.+.... +.......++|+.|.+......
T Consensus 263 -~~~l~~~~~L~~L~l~~~~--------~~~l~~~~~~~~~L~~L~Ls~~~l~~~~--~~~~~~~~~~L~~L~L~~~~~~ 331 (592)
T 3ogk_B 263 -YMNLVFPRKLCRLGLSYMG--------PNEMPILFPFAAQIRKLDLLYALLETED--HCTLIQKCPNLEVLETRNVIGD 331 (592)
T ss_dssp -SSCCCCCTTCCEEEETTCC--------TTTGGGGGGGGGGCCEEEETTCCCCHHH--HHHHHTTCTTCCEEEEEGGGHH
T ss_pred -HHHhhccccccccCccccc--------hhHHHHHHhhcCCCcEEecCCCcCCHHH--HHHHHHhCcCCCEEeccCccCH
Confidence 1125567788888876421 1224555677888999999888754322 1111123567777776511100
Q ss_pred ccccccccccccccccCccceeEeec----------CCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEE
Q 000202 1599 KSIVSWVTDYVQCDYNQHDRCLRFVN----------GKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCI 1668 (1866)
Q Consensus 1599 ~~~~~~~~~~~~~~~~~~~~~L~~~~----------~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~ 1668 (1866)
..+.. .... ......|...+ ...+....+..+ ...+++|++|.
T Consensus 332 ~~l~~----~~~~--~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l---------------------~~~~~~L~~L~ 384 (592)
T 3ogk_B 332 RGLEV----LAQY--CKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL---------------------AQGCQELEYMA 384 (592)
T ss_dssp HHHHH----HHHH--CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH---------------------HHHCTTCSEEE
T ss_pred HHHHH----HHHh--CCCCCEEEeecCccccccccccCccCHHHHHHH---------------------HhhCccCeEEE
Confidence 00000 0000 00111111111 112222111111 23477888888
Q ss_pred ecccCCccEeccCCCccccccccccccccccc---ccccccccc-cc--cccccccccEEeEecCcc-Cccccchhhhhh
Q 000202 1669 ISECLKIKTVVDTKEHTTAVFPSLENLTLNHL---WDLTCIWQG-IL--PEGSFAELRILSIHACRH-LEYVFTCSMIQF 1741 (1866)
Q Consensus 1669 l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~---~~L~~~~~~-~~--~~~~~p~L~~L~I~~C~~-L~~l~~~~~l~~ 1741 (1866)
+ .|+.+...... .....+++|+.|.+.+| +.++..... .+ -...+++|+.|+++.|.. ++.........+
T Consensus 385 l-~~~~l~~~~~~--~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~ 461 (592)
T 3ogk_B 385 V-YVSDITNESLE--SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461 (592)
T ss_dssp E-EESCCCHHHHH--HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHS
T ss_pred e-ecCCccHHHHH--HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHh
Confidence 8 55665432211 01224778888888743 344321000 00 012478899999988864 444323233445
Q ss_pred ccccceeeeccccccceecccCccccccccCCCCcCEEeccCCcccccc----ccCCCCCccEEEEEcCccccccC
Q 000202 1742 LAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANI----WRNDWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1742 L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i----~~~~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
+++|++|+|++|. +.... .......+++|+.|+|++|+ +..- ....+|+|++|++++|+ ++.-+
T Consensus 462 ~~~L~~L~L~~n~-l~~~~-----~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~ 529 (592)
T 3ogk_B 462 SPNVRWMLLGYVG-ESDEG-----LMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTG 529 (592)
T ss_dssp CTTCCEEEECSCC-SSHHH-----HHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTC
T ss_pred CccceEeeccCCC-CCHHH-----HHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHH
Confidence 8889999998874 32110 00112467899999999998 4321 11367999999999998 65443
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-14 Score=181.80 Aligned_cols=174 Identities=21% Similarity=0.288 Sum_probs=128.6
Q ss_pred CcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEecccc
Q 000202 1377 AKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1377 l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~ 1455 (1866)
...++..++.+..+|... .++++.|+|++| .+..++...|.++++|++|+|++|.+..++ ..+.++++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 456778888888888532 368899999987 577777777788999999999999998776 67889999999999999
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcCCh-hhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeec
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l 1534 (1866)
.+....+..+.++++|++|++++|.++.+|. .+.++++|++|++..+..+.. + +...+.++++|+.|++
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~-----i-----~~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY-----I-----SEGAFEGLSNLRYLNL 192 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-----E-----CTTTTTTCSSCCEEEC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce-----e-----CcchhhcccccCeecC
Confidence 8665545578899999999999999998875 588899999998865433221 1 1223566777888877
Q ss_pred ccCCCCCccccccccccccccCCCCCCEEEeecCCcc
Q 000202 1535 DVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIE 1571 (1866)
Q Consensus 1535 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 1571 (1866)
+.+... .+ ..+..+++|+.|+++.|.+.
T Consensus 193 ~~n~l~--------~~-~~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 193 AMCNLR--------EI-PNLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp TTSCCS--------SC-CCCTTCSSCCEEECTTSCCC
T ss_pred CCCcCc--------cc-cccCCCcccCEEECCCCccC
Confidence 754322 12 34666777777777766543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=182.70 Aligned_cols=174 Identities=20% Similarity=0.221 Sum_probs=130.8
Q ss_pred CcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEecccc
Q 000202 1377 AKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1377 l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~ 1455 (1866)
...++..++.+..+|... .++++.|+|++| .+..+++..|.++++|++|+|++|.+..++ ..+.++++|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 456778888888888422 368999999988 577777666788999999999999998776 67899999999999999
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcCCh-hhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeec
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l 1534 (1866)
.+....|..++++++|++|++++|.++.+|. .+.++++|++|++..+..+.. + +...+.++++|+.|++
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~-----i-----~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY-----I-----SEGAFEGLFNLKYLNL 203 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-----E-----CTTTTTTCTTCCEEEC
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc-----c-----ChhhccCCCCCCEEEC
Confidence 8665555568899999999999999998876 588999999999876543321 1 1223567778888888
Q ss_pred ccCCCCCccccccccccccccCCCCCCEEEeecCCcc
Q 000202 1535 DVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIE 1571 (1866)
Q Consensus 1535 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 1571 (1866)
+.+... .+ ..+..+++|+.|+++.|.+.
T Consensus 204 ~~n~l~--------~~-~~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 204 GMCNIK--------DM-PNLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp TTSCCS--------SC-CCCTTCTTCCEEECTTSCCS
T ss_pred CCCccc--------cc-ccccccccccEEECcCCcCc
Confidence 754322 12 34667777777777776543
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=7.8e-15 Score=176.57 Aligned_cols=177 Identities=19% Similarity=0.259 Sum_probs=144.0
Q ss_pred ccCcEEEccCCCCCC---CC-CCCCCCcccEEEccC-CcCCcccChhHHhcCCCCcEEEccCCCCC-CCChhhcCCCCCc
Q 000202 1375 THAKMIFFMDNDLQT---LP-GRPSCPNLLTLFLQR-NCRLRVIPPSFFELMTSLKVLNLSKTRIK-SLPETLVNLKCLQ 1448 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~---l~-~~~~~~~L~~L~L~~-~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~ 1448 (1866)
.+++.|++.+|.+.. +| .+..+++|++|++++ |.....+|..+ +.+++|++|+|++|.+. .+|..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 467889999999984 66 467899999999995 65555677765 88999999999999998 8899999999999
Q ss_pred EEecccccCcccCCccccCCCCCcEEEccCCCCC-cCChhhcCCC-ccceeccccccccCCCccccCCCCCCChhhhhcc
Q 000202 1449 ILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIK-MLPKEIGKLT-SLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRL 1526 (1866)
Q Consensus 1449 ~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~-~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L 1526 (1866)
+|+|++|.+.+.+|..++++++|++|++++|.++ .+|..+++++ +|++|+++++.-. ..+| ..+..+
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~-----~~~~------~~~~~l 197 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-----GKIP------PTFANL 197 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-----EECC------GGGGGC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee-----ccCC------hHHhCC
Confidence 9999999988899999999999999999999998 8899999998 9999998764211 0111 235566
Q ss_pred ccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCcc
Q 000202 1527 QALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIE 1571 (1866)
Q Consensus 1527 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 1571 (1866)
+ |+.|+++.+.. ....+..+..+++|+.|+++.|.+.
T Consensus 198 ~-L~~L~Ls~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 198 N-LAFVDLSRNML-------EGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp C-CSEEECCSSEE-------EECCGGGCCTTSCCSEEECCSSEEC
T ss_pred c-ccEEECcCCcc-------cCcCCHHHhcCCCCCEEECCCCcee
Confidence 6 99999885431 1235567788999999999887754
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=177.49 Aligned_cols=159 Identities=26% Similarity=0.300 Sum_probs=123.3
Q ss_pred CCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEecccccCcccCCccccCCCCCc
Q 000202 1394 PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILILRDCDFLFVLPPEVGSLECLE 1472 (1866)
Q Consensus 1394 ~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~ 1472 (1866)
..|+.....+++++ .+..+|..+ .++|++|+|++|.++.+|. .+.++++|++|+|++|.+.+..|..++++++|+
T Consensus 28 ~~C~~~~~c~~~~~-~l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 28 LSCDRNGICKGSSG-SLNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CEECTTSEEECCST-TCSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCeEeeCCCC-Ccccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 45666667888766 788899866 3689999999999998886 899999999999999998777788899999999
Q ss_pred EEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCCCCcccccccccc
Q 000202 1473 VLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVI 1551 (1866)
Q Consensus 1473 ~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 1551 (1866)
+|++++|.++.+|.. ++++++|++|+++++. ...++. ...+..+++|+.|+++.+... .....
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~------l~~l~~----~~~~~~l~~L~~L~l~~n~~~------~~~~~ 167 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP------YKTLGE----TSLFSHLTKLQILRVGNMDTF------TKIQR 167 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCC------CSSSCS----SCSCTTCTTCCEEEEEESSSC------CEECT
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCC------CcccCc----hhhhccCCCCcEEECCCCccc------cccCH
Confidence 999999999999877 8999999999997542 112221 023667888999988854211 11223
Q ss_pred ccccCCCCCCEEEeecCCccc
Q 000202 1552 TEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1552 ~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
..+..+++|+.|+++.|.+..
T Consensus 168 ~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 168 KDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp TTTTTCCEEEEEEEEETTCCE
T ss_pred HHccCCCCCCEEECCCCCcCc
Confidence 456778888888888776543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-13 Score=179.44 Aligned_cols=154 Identities=23% Similarity=0.225 Sum_probs=121.2
Q ss_pred ccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEeccc
Q 000202 1375 THAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRD 1454 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 1454 (1866)
++++.|++++|.+..+|. .+++|++|+|++| .+..+|. .+++|++|+|++|.++.+|. .+.+|++|+|++
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~ 130 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGN-QLTSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFG 130 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSC-CCSCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCS
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCC-cCCcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCC
Confidence 789999999999999987 6899999999988 5778886 57999999999999999988 678999999999
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeec
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l 1534 (1866)
|.+ ..+|.. +++|++|++++|.++.+|.. +.+|+.|+++++. +..++ ..+++|+.|++
T Consensus 131 N~l-~~lp~~---l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~------l~~l~---------~~~~~L~~L~L 188 (622)
T 3g06_A 131 NQL-TSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ------LTSLP---------MLPSGLQELSV 188 (622)
T ss_dssp SCC-SCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC------CSCCC---------CCCTTCCEEEC
T ss_pred CCC-CcCCCC---CCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCC------CCCCc---------ccCCCCcEEEC
Confidence 984 557764 58999999999999999864 4678888876532 12222 24688999999
Q ss_pred ccCCCCCccccccccccccccCCCCCCEEEeecCCcc
Q 000202 1535 DVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIE 1571 (1866)
Q Consensus 1535 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 1571 (1866)
+.+... .++. .+++|+.|+++.|.+.
T Consensus 189 s~N~l~--------~l~~---~~~~L~~L~L~~N~l~ 214 (622)
T 3g06_A 189 SDNQLA--------SLPT---LPSELYKLWAYNNRLT 214 (622)
T ss_dssp CSSCCS--------CCCC---CCTTCCEEECCSSCCS
T ss_pred CCCCCC--------CCCC---ccchhhEEECcCCccc
Confidence 854322 1222 2468888888777654
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.2e-14 Score=167.92 Aligned_cols=174 Identities=21% Similarity=0.251 Sum_probs=125.1
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC---ChhhcCCCCCcEEeccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL---PETLVNLKCLQILILRD 1454 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l---p~~i~~L~~L~~L~L~~ 1454 (1866)
+.+++.++.+..+|.. -.++|+.|++++| .+..+|..+|+.+++|++|+|++|.+..+ |..+..+.+|++|+|++
T Consensus 10 ~~l~c~~~~l~~ip~~-~~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCC-CCCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4577777788888742 2368888888877 57788888778888899999998888755 67777888899999988
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCCh--hhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEe
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPK--EIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETL 1532 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L 1532 (1866)
|.+ ..+|..+.++++|++|++++|.++.+|. .+.++++|++|+++++.- ... ....+..+++|+.|
T Consensus 88 n~i-~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l------~~~-----~~~~~~~l~~L~~L 155 (306)
T 2z66_A 88 NGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT------RVA-----FNGIFNGLSSLEVL 155 (306)
T ss_dssp CSE-EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC------EEC-----STTTTTTCTTCCEE
T ss_pred Ccc-ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC------Ccc-----chhhcccCcCCCEE
Confidence 874 4677788888899999999888887764 688888888888865421 111 11235667788888
Q ss_pred ecccCCCCCccccccccccccccCCCCCCEEEeecCCcc
Q 000202 1533 SIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIE 1571 (1866)
Q Consensus 1533 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 1571 (1866)
+++.+.... ...+..+..+++|+.|+++.|.+.
T Consensus 156 ~l~~n~l~~------~~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 156 KMAGNSFQE------NFLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp ECTTCEEGG------GEECSCCTTCTTCCEEECTTSCCC
T ss_pred ECCCCcccc------ccchhHHhhCcCCCEEECCCCCcC
Confidence 877432110 124556677788888888776644
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-13 Score=171.95 Aligned_cols=177 Identities=24% Similarity=0.349 Sum_probs=146.3
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~ 1451 (1866)
++++.|++++|.+..++ .+..+++|+.|+|++| .+..+++..|..+++|++|+|++|.++.+|. .+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 67899999999999776 5788999999999988 6778888888999999999999999999985 689999999999
Q ss_pred cccccCcccCCccccCCCCCcEEEccCC-CCCcCCh-hhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccC
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGT-EIKMLPK-EIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQAL 1529 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~-~i~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L 1529 (1866)
|++|.+....+..+.++++|++|++++| .+..+|. .+.++++|++|+++++. +..+|. +..+++|
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~------l~~~~~-------~~~l~~L 209 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN------LREIPN-------LTPLIKL 209 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC------CSSCCC-------CTTCSSC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc------Cccccc-------cCCCccc
Confidence 9999977666668999999999999995 6777766 58999999999997642 123332 6788999
Q ss_pred cEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1530 ETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1530 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
+.|+++.+... ...+..+..+++|+.|+++.|.+..
T Consensus 210 ~~L~Ls~N~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 210 DELDLSGNHLS-------AIRPGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp CEEECTTSCCC-------EECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CEEECCCCccC-------ccChhhhccCccCCEEECCCCceeE
Confidence 99999865322 2235678899999999998877543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-14 Score=193.14 Aligned_cols=382 Identities=14% Similarity=0.051 Sum_probs=180.3
Q ss_pred cccCcEEEccCCCCCCC--CCCC-CCCcccEEEccCCcCCccc-ChhHHhcCCCCcEEEccCCCCCC-----CChhhcCC
Q 000202 1374 WTHAKMIFFMDNDLQTL--PGRP-SCPNLLTLFLQRNCRLRVI-PPSFFELMTSLKVLNLSKTRIKS-----LPETLVNL 1444 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~~l--~~~~-~~~~L~~L~L~~~~~l~~~-p~~~~~~l~~L~~L~Ls~~~i~~-----lp~~i~~L 1444 (1866)
+++|+.|+++++.+... ..+. .+++|+.|+|++|..+... ...++..+++|++|+|++|.++. ++.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 44566666665554321 1111 3556666666655333221 12233455666666666665432 22222344
Q ss_pred CCCcEEeccccc--Cc-ccCCccccCCCCCcEEEccCC-CCCcCChhhcCCCccceeccccccc-cCCCccccCCCCCCC
Q 000202 1445 KCLQILILRDCD--FL-FVLPPEVGSLECLEVLDLRGT-EIKMLPKEIGKLTSLRYLTVFFFGS-MYKSEYIKLPPDLIS 1519 (1866)
Q Consensus 1445 ~~L~~L~L~~~~--~~-~~lP~~i~~L~~L~~L~l~~~-~i~~lp~~i~~L~~L~~L~l~~~~~-~~~~~~~~l~~~~~~ 1519 (1866)
++|++|+|++|. +. ..++..+.++++|++|++++| .+..+|..+.++++|++|.+..+.. ........+
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l------ 257 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL------ 257 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH------
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH------
Confidence 566666666554 00 011111233466666666665 3444555556666666665543321 000000000
Q ss_pred hhhhhccccCcEee-cccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEeccc
Q 000202 1520 SDILSRLQALETLS-IDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDV 1598 (1866)
Q Consensus 1520 ~~~l~~L~~L~~L~-l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 1598 (1866)
...+.++++|+.|. +.. .....+...+..+++|++|++++|.+.... +.......++|+.|.+......
T Consensus 258 ~~~l~~~~~L~~Ls~~~~--------~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~--l~~~~~~~~~L~~L~l~~~~~~ 327 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWD--------AVPAYLPAVYSVCSRLTTLNLSYATVQSYD--LVKLLCQCPKLQRLWVLDYIED 327 (594)
T ss_dssp HHHHHTCTTCCEEECCBT--------CCGGGGGGGHHHHTTCCEEECTTCCCCHHH--HHHHHTTCTTCCEEEEEGGGHH
T ss_pred HHHHhcCCCcccccCCcc--------cchhhHHHHHHhhCCCCEEEccCCCCCHHH--HHHHHhcCCCcCEEeCcCccCH
Confidence 01245556666552 221 111123333346677888888777754311 1111123456666666422000
Q ss_pred ccccccccccccccccCccceeEe------ecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEeccc
Q 000202 1599 KSIVSWVTDYVQCDYNQHDRCLRF------VNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISEC 1672 (1866)
Q Consensus 1599 ~~~~~~~~~~~~~~~~~~~~~L~~------~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c 1672 (1866)
..+.. ..........+.+.. .....+....+..+ ...+++|+.|. .+|
T Consensus 328 ~~l~~----l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l---------------------~~~~~~L~~L~-~~~ 381 (594)
T 2p1m_B 328 AGLEV----LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV---------------------SMGCPKLESVL-YFC 381 (594)
T ss_dssp HHHHH----HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH---------------------HHHCTTCCEEE-EEE
T ss_pred HHHHH----HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH---------------------HHhchhHHHHH-Hhc
Confidence 00000 000000001111100 01111221111111 12367888884 456
Q ss_pred CCccEeccCCCccccccccccccccc-----cccccccccc-cccc--ccccccccEEeEecCccCccccchhhhhhccc
Q 000202 1673 LKIKTVVDTKEHTTAVFPSLENLTLN-----HLWDLTCIWQ-GILP--EGSFAELRILSIHACRHLEYVFTCSMIQFLAK 1744 (1866)
Q Consensus 1673 ~~l~~i~~~~~~~~~~f~~L~~L~l~-----~~~~L~~~~~-~~~~--~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~s 1744 (1866)
+.+...... .....+++|+.|++. +|.+++.... ..++ ...+++|+.|++++ +++..........+++
T Consensus 382 ~~l~~~~~~--~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~ 457 (594)
T 2p1m_B 382 RQMTNAALI--TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKK 457 (594)
T ss_dssp SCCCHHHHH--HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTT
T ss_pred CCcCHHHHH--HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchh
Confidence 666543211 112347889999888 4555542110 0000 23578899999865 5555433233344888
Q ss_pred cceeeeccccccceecccCccccccccCCCCcCEEeccCCcccccc----ccCCCCCccEEEEEcCcc
Q 000202 1745 LEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANI----WRNDWPSLEYISFYGCPK 1808 (1866)
Q Consensus 1745 Le~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i----~~~~lpsLe~L~I~~Cp~ 1808 (1866)
|+.|+|++|. +.... . ..-...+|+|+.|+|++|+. ... ....+++|++|++++|+.
T Consensus 458 L~~L~L~~~~-i~~~~----~-~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 458 MEMLSVAFAG-DSDLG----M-HHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CCEEEEESCC-SSHHH----H-HHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred ccEeeccCCC-CcHHH----H-HHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 9999998885 31110 0 00013589999999999985 221 123579999999999976
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-13 Score=172.19 Aligned_cols=177 Identities=23% Similarity=0.295 Sum_probs=144.9
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~ 1451 (1866)
++++.|++++|.+..++ .+..+++|+.|+|++| .+..+++..|..+++|++|+|++|.++.+|.. +..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 57899999999999774 4778999999999988 67778877779999999999999999988854 88999999999
Q ss_pred cccccCcccCCccccCCCCCcEEEccC-CCCCcCCh-hhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccC
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRG-TEIKMLPK-EIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQAL 1529 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~-~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L 1529 (1866)
|++|.+....+..+.++++|++|++++ +.+..+|. .+.++++|++|+++++. +..++. +..+++|
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~------l~~~~~-------~~~l~~L 220 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN------IKDMPN-------LTPLVGL 220 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC------CSSCCC-------CTTCTTC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc------cccccc-------ccccccc
Confidence 999997665566899999999999999 47777876 48999999999997642 122222 6688999
Q ss_pred cEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1530 ETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1530 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
+.|+++.+... ...+..+..+++|+.|+++.|.+..
T Consensus 221 ~~L~Ls~N~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~ 256 (452)
T 3zyi_A 221 EELEMSGNHFP-------EIRPGSFHGLSSLKKLWVMNSQVSL 256 (452)
T ss_dssp CEEECTTSCCS-------EECGGGGTTCTTCCEEECTTSCCCE
T ss_pred cEEECcCCcCc-------ccCcccccCccCCCEEEeCCCcCce
Confidence 99999865422 2345678899999999998877543
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-13 Score=162.65 Aligned_cols=172 Identities=24% Similarity=0.286 Sum_probs=108.0
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEeccccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRDCD 1456 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~ 1456 (1866)
+.+++.++.+..+|. ...++|+.|++++| .+..+++..+..+++|++|+|++|.+..+ |..+..+++|++|+|++|.
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 456667777777763 22457777777766 56666666567777788888887777765 5677777788888887776
Q ss_pred CcccC-CccccCCCCCcEEEccCCCCCcC-ChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeec
Q 000202 1457 FLFVL-PPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534 (1866)
Q Consensus 1457 ~~~~l-P~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l 1534 (1866)
.+..+ |..+.++++|++|++++|.++.+ |..+.++++|++|+++++. ...++ ...+..+++|+.|++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~-----~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA------LQALP-----DDTFRDLGNLTHLFL 160 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC------CCCCC-----TTTTTTCTTCCEEEC
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc------ccccC-----HhHhccCCCccEEEC
Confidence 33333 66777777888888887777766 4456777777777775431 11111 122455666666666
Q ss_pred ccCCCCCcccccccccc-ccccCCCCCCEEEeecCCc
Q 000202 1535 DVHPGDKRWDKDVKIVI-TEVSGLTKLSSLSFHFPEI 1570 (1866)
Q Consensus 1535 ~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l 1570 (1866)
+.+... .++ ..+..+++|+.|+++.|.+
T Consensus 161 ~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 161 HGNRIS--------SVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp CSSCCC--------EECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCccc--------ccCHHHhcCccccCEEECCCCcc
Confidence 643211 122 2355566666666666553
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-15 Score=195.60 Aligned_cols=64 Identities=23% Similarity=0.297 Sum_probs=29.1
Q ss_pred hcCCCCcEEEccCCCCCC-CChhh-cCCC----CCcEEecccccCcc----cCCccccCCCCCcEEEccCCCCC
Q 000202 1419 ELMTSLKVLNLSKTRIKS-LPETL-VNLK----CLQILILRDCDFLF----VLPPEVGSLECLEVLDLRGTEIK 1482 (1866)
Q Consensus 1419 ~~l~~L~~L~Ls~~~i~~-lp~~i-~~L~----~L~~L~L~~~~~~~----~lP~~i~~L~~L~~L~l~~~~i~ 1482 (1866)
..+++|++|+|++|.+.. .+..+ ..+. +|++|+|++|.+.. .+|..+.++++|++|++++|.+.
T Consensus 53 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 53 RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp HTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 344555555555555442 11122 1232 35555555554331 33444555555555555555443
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-14 Score=190.29 Aligned_cols=137 Identities=11% Similarity=-0.010 Sum_probs=84.6
Q ss_pred ccCCcEEEecc---cCCccEeccC--CCccccccccccccccccccc-ccccccccccccccccccEEeEecCccCcccc
Q 000202 1661 MSGLKFCIISE---CLKIKTVVDT--KEHTTAVFPSLENLTLNHLWD-LTCIWQGILPEGSFAELRILSIHACRHLEYVF 1734 (1866)
Q Consensus 1661 l~~L~~L~l~~---c~~l~~i~~~--~~~~~~~f~~L~~L~l~~~~~-L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~ 1734 (1866)
+++|+.|++++ |+.++..+.. .......+++|+.|.+++|.+ ++......+ ...+++|+.|++++| +++...
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~L~L~~n-~l~~~~ 479 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWMLLGYV-GESDEG 479 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCEEEECSC-CSSHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceEeeccCC-CCCHHH
Confidence 78899999984 5566553211 001234588999999977653 222111111 124789999999988 465533
Q ss_pred chhhhhhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCcccccc----ccCCCCCccEEEEEcC
Q 000202 1735 TCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANI----WRNDWPSLEYISFYGC 1806 (1866)
Q Consensus 1735 ~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i----~~~~lpsLe~L~I~~C 1806 (1866)
....+.++++|++|+|++|+ +..-.. ......+|+|+.|+|++|+ +... ....+|.|....+...
T Consensus 480 ~~~~~~~~~~L~~L~l~~n~-l~~~~~-----~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 480 LMEFSRGCPNLQKLEMRGCC-FSERAI-----AAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHTCCTTCCEEEEESCC-CBHHHH-----HHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHhcCcccCeeeccCCC-CcHHHH-----HHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence 33456778999999999997 422100 0112368999999999998 5443 1225677766666543
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.3e-13 Score=156.31 Aligned_cols=179 Identities=26% Similarity=0.394 Sum_probs=139.0
Q ss_pred ccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~ 1451 (1866)
.+++.|++++|.+..++. +..+++|+.|++++| .+..+|..+|..+++|++|+|++|.+..+|. .+..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 568889999999888773 678899999999877 6778888888889999999999999988875 468899999999
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCc
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALE 1530 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~ 1530 (1866)
|++|.+....|..++++++|++|++++|.++.+|.. ++.+++|++|+++++. +..++ ...+..+++|+
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~------l~~~~-----~~~~~~l~~L~ 184 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ------LKRVP-----EGAFDKLTELK 184 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CSCCC-----TTTTTTCTTCC
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc------CcEeC-----hhHhccCCCcC
Confidence 999987776667788999999999999999988765 7889999999886532 11222 23366788899
Q ss_pred EeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1531 TLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1531 ~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
.|+++.+.... .....+..+++|+.|+++.|.+.+
T Consensus 185 ~L~L~~N~l~~-------~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 185 TLKLDNNQLKR-------VPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp EEECCSSCCSC-------CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECCCCcCCc-------CCHHHhccccCCCEEEecCCCeeC
Confidence 99988543221 122346778889999998887543
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.7e-13 Score=160.79 Aligned_cols=178 Identities=24% Similarity=0.207 Sum_probs=141.8
Q ss_pred ccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCccc---ChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcE
Q 000202 1375 THAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVI---PPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQI 1449 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~---p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~ 1449 (1866)
++++.|++++|.+..+|. +..+++|+.|++++| .+..+ |..+ ..+++|++|+|++|.+..+|..+..+++|++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCCCE
Confidence 589999999999999885 578999999999988 45443 4555 5689999999999999999999999999999
Q ss_pred EecccccCcccCC-ccccCCCCCcEEEccCCCCCcC-ChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccc
Q 000202 1450 LILRDCDFLFVLP-PEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQ 1527 (1866)
Q Consensus 1450 L~L~~~~~~~~lP-~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~ 1527 (1866)
|++++|.+....+ ..+.++++|++|++++|.+... |..++++++|++|+++++.-.. ..++. .+..++
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~------~~~~l~ 175 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE----NFLPD------IFTELR 175 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG----GEECS------CCTTCT
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc----ccchh------HHhhCc
Confidence 9999998655443 5789999999999999999855 5668999999999997643111 01222 366889
Q ss_pred cCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCcc
Q 000202 1528 ALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIE 1571 (1866)
Q Consensus 1528 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 1571 (1866)
+|+.|+++.+... ...+..+..+++|+.|+++.|.+.
T Consensus 176 ~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 176 NLTFLDLSQCQLE-------QLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp TCCEEECTTSCCC-------EECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCEEECCCCCcC-------CcCHHHhcCCCCCCEEECCCCccC
Confidence 9999999865322 123566788999999999887654
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=157.56 Aligned_cols=191 Identities=21% Similarity=0.288 Sum_probs=150.3
Q ss_pred CCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCc
Q 000202 1369 PSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQ 1448 (1866)
Q Consensus 1369 ~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~ 1448 (1866)
.....+++++.|++.++.+..+|.+..+++|+.|++++| .+..+++ +..+++|++|+|++|.+..+| .++.+++|+
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 35 VTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIK 110 (308)
T ss_dssp ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred ecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence 345668899999999999999888888999999999988 6677776 588999999999999998876 688999999
Q ss_pred EEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhcccc
Q 000202 1449 ILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQA 1528 (1866)
Q Consensus 1449 ~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~ 1528 (1866)
+|+|++|.+. .+|. ++.+++|++|++++|.++.+|. ++.+++|++|+++++. +. .++ .+..+++
T Consensus 111 ~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~-----~~~-------~l~~l~~ 174 (308)
T 1h6u_A 111 TLDLTSTQIT-DVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VS-----DLT-------PLANLSK 174 (308)
T ss_dssp EEECTTSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CC-----CCG-------GGTTCTT
T ss_pred EEECCCCCCC-Cchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CC-----CCh-------hhcCCCC
Confidence 9999999854 4554 8999999999999999998876 8899999999987642 11 111 1678889
Q ss_pred CcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEE
Q 000202 1529 LETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFV 1593 (1866)
Q Consensus 1529 L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~ 1593 (1866)
|+.|+++.+... .+. .+..+++|+.|+++.|.+..++. ....++|+.|.+.
T Consensus 175 L~~L~l~~n~l~--------~~~-~l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 175 LTTLKADDNKIS--------DIS-PLASLPNLIEVHLKNNQISDVSP-----LANTSNLFIVTLT 225 (308)
T ss_dssp CCEEECCSSCCC--------CCG-GGGGCTTCCEEECTTSCCCBCGG-----GTTCTTCCEEEEE
T ss_pred CCEEECCCCccC--------cCh-hhcCCCCCCEEEccCCccCcccc-----ccCCCCCCEEEcc
Confidence 999999865432 122 37788999999999998877653 2245667777664
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=8.8e-13 Score=156.57 Aligned_cols=198 Identities=22% Similarity=0.299 Sum_probs=144.2
Q ss_pred cccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCC-CCCC-ChhhcCCCCCcE
Q 000202 1374 WTHAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTR-IKSL-PETLVNLKCLQI 1449 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~-i~~l-p~~i~~L~~L~~ 1449 (1866)
.++++.|++++|.+..++. +..+++|+.|++++| .+..+++..+..+++|++|+|++|. +..+ |..+..+++|++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 3578888888888887763 678888999999877 5666655556788889999999887 7777 577888889999
Q ss_pred EecccccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhcccc
Q 000202 1450 LILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQA 1528 (1866)
Q Consensus 1450 L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~ 1528 (1866)
|+|++|.+.+..|..++++++|++|++++|.++.+|.. ++++++|++|+++++. +..++. ..+..+++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~-----~~~~~l~~ 178 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR------ISSVPE-----RAFRGLHS 178 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CCEECT-----TTTTTCTT
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc------ccccCH-----HHhcCccc
Confidence 99998887776677888888999999999988887754 7888889988886532 112221 23567888
Q ss_pred CcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEE
Q 000202 1529 LETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFV 1593 (1866)
Q Consensus 1529 L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~ 1593 (1866)
|+.|+++.+... ...+..+..+++|+.|+++.|.+..++.... ...++|+.+.+.
T Consensus 179 L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~ 233 (285)
T 1ozn_A 179 LDRLLLHQNRVA-------HVHPHAFRDLGRLMTLYLFANNLSALPTEAL---APLRALQYLRLN 233 (285)
T ss_dssp CCEEECCSSCCC-------EECTTTTTTCTTCCEEECCSSCCSCCCHHHH---TTCTTCCEEECC
T ss_pred cCEEECCCCccc-------ccCHhHccCcccccEeeCCCCcCCcCCHHHc---ccCcccCEEecc
Confidence 888888754322 1235567778888888888888776543211 123556666653
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-14 Score=171.45 Aligned_cols=84 Identities=23% Similarity=0.220 Sum_probs=46.6
Q ss_pred cccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhc
Q 000202 1411 RVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIG 1489 (1866)
Q Consensus 1411 ~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~ 1489 (1866)
...+..++..+++|++|+|++|.++.++ ..++.+++|++|+|++|.+.+..| ++.+++|++|++++|.++.+|.
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~--- 97 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV--- 97 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE---
T ss_pred hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC---
Confidence 3344444455556666666666666554 456666666666666665443322 5666666666666666555442
Q ss_pred CCCccceeccc
Q 000202 1490 KLTSLRYLTVF 1500 (1866)
Q Consensus 1490 ~L~~L~~L~l~ 1500 (1866)
+++|++|+++
T Consensus 98 -~~~L~~L~l~ 107 (317)
T 3o53_A 98 -GPSIETLHAA 107 (317)
T ss_dssp -CTTCCEEECC
T ss_pred -CCCcCEEECC
Confidence 2555555554
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-14 Score=190.25 Aligned_cols=376 Identities=15% Similarity=0.098 Sum_probs=195.2
Q ss_pred cccccCcEEEccCCCCC-C---CCC-------------CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCC-C
Q 000202 1372 EEWTHAKMIFFMDNDLQ-T---LPG-------------RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKT-R 1433 (1866)
Q Consensus 1372 ~~~~~l~~l~l~~~~l~-~---l~~-------------~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~-~ 1433 (1866)
..+++++.+.+.++... . .|. ...+++|+.|+|++|......+..+...+++|++|+|++| .
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 34677888888875421 1 111 1246778888888774332333344335778888888887 4
Q ss_pred CCC--CChhhcCCCCCcEEecccccCcccCCccc----cCCCCCcEEEccCCC--CC--cCChhhcCCCccceecccccc
Q 000202 1434 IKS--LPETLVNLKCLQILILRDCDFLFVLPPEV----GSLECLEVLDLRGTE--IK--MLPKEIGKLTSLRYLTVFFFG 1503 (1866)
Q Consensus 1434 i~~--lp~~i~~L~~L~~L~L~~~~~~~~lP~~i----~~L~~L~~L~l~~~~--i~--~lp~~i~~L~~L~~L~l~~~~ 1503 (1866)
+.. ++..+.++++|++|+|++|.+....+..+ ..+++|++|++++|. +. .++.-+.++++|++|++.+|.
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 443 55555577888888888877544333333 356678888888775 22 222234556788888776653
Q ss_pred ccCCCccccCCCCCCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEE-EeecCCccchHHhhccCcc
Q 000202 1504 SMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSL-SFHFPEIECVAEFLKGSAW 1582 (1866)
Q Consensus 1504 ~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L-~l~~~~l~~~~~~~~~~~~ 1582 (1866)
.... + ...+..+++|+.|++..+.....+ +....+...+.++++|+.| .+.......++... .
T Consensus 223 ~~~~-----l------~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~----~ 286 (594)
T 2p1m_B 223 PLEK-----L------ATLLQRAPQLEELGTGGYTAEVRP-DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVY----S 286 (594)
T ss_dssp CHHH-----H------HHHHHHCTTCSEEECSBCCCCCCH-HHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGH----H
T ss_pred cHHH-----H------HHHHhcCCcceEcccccccCccch-hhHHHHHHHHhcCCCcccccCCcccchhhHHHHH----H
Confidence 2211 1 123566777888876644322111 1122344466777777777 33322222221111 1
Q ss_pred ccCCcceeEEEEecccccccccccccccccccCccceeEeecCCCCChHHHHHH----HhhcceecccccCceecCCCCc
Q 000202 1583 NNQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQIL----IHSTAFYVDHHLSIVSLSDFGV 1658 (1866)
Q Consensus 1583 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l----~~~~~l~~~~~~~l~~L~~~~l 1658 (1866)
..++|+.|.+..+. +.+..+..+ ..+..+.+.++..-..+.. -.
T Consensus 287 ~~~~L~~L~L~~~~-------------------------------l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~-l~ 334 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-------------------------------VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV-LA 334 (594)
T ss_dssp HHTTCCEEECTTCC-------------------------------CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH-HH
T ss_pred hhCCCCEEEccCCC-------------------------------CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHH-HH
Confidence 23455555542111 111111100 0111111111100000000 01
Q ss_pred ccccCCcEEEeccc--------CCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEe-----
Q 000202 1659 GYMSGLKFCIISEC--------LKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIH----- 1725 (1866)
Q Consensus 1659 ~~l~~L~~L~l~~c--------~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~----- 1725 (1866)
..+++|+.|+|.+| ..+...... .....+++|+.|. .+|.+++......+ ...+|+|+.|++.
T Consensus 335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~--~l~~~~~~L~~L~-~~~~~l~~~~~~~l-~~~~~~L~~L~L~~~~~~ 410 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLV--SVSMGCPKLESVL-YFCRQMTNAALITI-ARNRPNMTRFRLCIIEPK 410 (594)
T ss_dssp HHCTTCCEEEEECSCTTCSSCSSCCCHHHHH--HHHHHCTTCCEEE-EEESCCCHHHHHHH-HHHCTTCCEEEEEESSTT
T ss_pred HhCCCCCEEEEecCcccccccCCCCCHHHHH--HHHHhchhHHHHH-HhcCCcCHHHHHHH-HhhCCCcceeEeecccCC
Confidence 24677888888543 333221110 0112467888884 34555443111011 0147888888888
Q ss_pred cCccCccccch----hhhhhccccceeeeccccccceecccCcccccccc-CCCCcCEEeccCCccccccc----cCCCC
Q 000202 1726 ACRHLEYVFTC----SMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCI-MLPSLKKLRLHHLPELANIW----RNDWP 1796 (1866)
Q Consensus 1726 ~C~~L~~l~~~----~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~-~lp~L~~L~L~~c~~L~~i~----~~~lp 1796 (1866)
+|.+++..+.. ..+.++++|++|++++ .+..... ..+. .+++|+.|+|++|. +.... ...+|
T Consensus 411 ~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~------~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~ 481 (594)
T 2p1m_B 411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVF------EYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCD 481 (594)
T ss_dssp CCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHH------HHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCT
T ss_pred CcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHH------HHHHHhchhccEeeccCCC-CcHHHHHHHHhcCC
Confidence 67777754321 2356678888888865 3322110 0111 47899999999887 32221 13589
Q ss_pred CccEEEEEcCcc
Q 000202 1797 SLEYISFYGCPK 1808 (1866)
Q Consensus 1797 sLe~L~I~~Cp~ 1808 (1866)
+|++|++++|+-
T Consensus 482 ~L~~L~L~~n~~ 493 (594)
T 2p1m_B 482 SLRKLEIRDCPF 493 (594)
T ss_dssp TCCEEEEESCSC
T ss_pred CcCEEECcCCCC
Confidence 999999999985
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-12 Score=153.25 Aligned_cols=188 Identities=24% Similarity=0.326 Sum_probs=148.3
Q ss_pred CCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hc
Q 000202 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LV 1442 (1866)
Q Consensus 1364 ~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~ 1442 (1866)
.+........+++++.+++.+|.+..++.+..+++|+.|++++|. +..++ .+..+++|++|+|++|.++.+|.. ++
T Consensus 30 ~~~~~~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~ 106 (272)
T 3rfs_A 30 SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK-LHDIS--ALKELTNLTYLILTGNQLQSLPNGVFD 106 (272)
T ss_dssp CTTSEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSC-CCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred ccccccccccccceeeeeeCCCCcccccccccCCCCcEEECCCCC-CCCch--hhcCCCCCCEEECCCCccCccChhHhc
Confidence 333444566788999999999999999888899999999999884 55554 347899999999999999988754 68
Q ss_pred CCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChh
Q 000202 1443 NLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSD 1521 (1866)
Q Consensus 1443 ~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~ 1521 (1866)
++++|++|+|++|.+.+..|..++++++|++|++++|.++.+|.. ++++++|++|+++++. +..++ ..
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~-----~~ 175 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ------LQSLP-----EG 175 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CCCCC-----TT
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC------cCccC-----HH
Confidence 999999999999997766666789999999999999999988765 6899999999997652 11222 23
Q ss_pred hhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1522 ILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1522 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
.+..+++|+.|+++.+.... .....+..+++|+.|+++.|.+.+
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKS-------VPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSC-------CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred HhcCCccCCEEECCCCcCCc-------cCHHHHhCCcCCCEEEccCCCccc
Confidence 36788999999998654221 223446889999999999887653
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-13 Score=164.97 Aligned_cols=97 Identities=22% Similarity=0.159 Sum_probs=55.1
Q ss_pred CCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEE
Q 000202 1396 CPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLD 1475 (1866)
Q Consensus 1396 ~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~ 1475 (1866)
+++|+.|+|++| .+..+++..++.+++|++|+|++|.+..+++ +..+++|++|+|++|.+. .+| .+++|++|+
T Consensus 33 ~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~-~l~----~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-ELL----VGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEE-EEE----ECTTCCEEE
T ss_pred CCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccc-ccc----CCCCcCEEE
Confidence 445666666655 4445555445666666666666666655443 666666666666666532 222 235666666
Q ss_pred ccCCCCCcCChhhcCCCccceecccc
Q 000202 1476 LRGTEIKMLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1476 l~~~~i~~lp~~i~~L~~L~~L~l~~ 1501 (1866)
+++|.++.+|.. .+++|++|++++
T Consensus 106 l~~n~l~~~~~~--~~~~L~~L~l~~ 129 (317)
T 3o53_A 106 AANNNISRVSCS--RGQGKKNIYLAN 129 (317)
T ss_dssp CCSSCCSEEEEC--CCSSCEEEECCS
T ss_pred CCCCccCCcCcc--ccCCCCEEECCC
Confidence 666666655432 245566665543
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-12 Score=153.58 Aligned_cols=195 Identities=21% Similarity=0.178 Sum_probs=129.9
Q ss_pred ccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEE
Q 000202 1371 EEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQIL 1450 (1866)
Q Consensus 1371 ~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L 1450 (1866)
...+++++.+++.++.+..+|... .++++.|+|++| .+..+++..+..+++|++|+|++|.++.+|.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 345667778888888887777422 267888888877 45666655567788888888888888777654 677888888
Q ss_pred ecccccCcccCCccccCCCCCcEEEccCCCCCcCCh-hhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccC
Q 000202 1451 ILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQAL 1529 (1866)
Q Consensus 1451 ~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L 1529 (1866)
+|++|.+ ..+|..+..+++|++|++++|.++.+|. .+.++++|++|+++++. +..++ ...+..+++|
T Consensus 83 ~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~------l~~~~-----~~~~~~l~~L 150 (290)
T 1p9a_G 83 DLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE------LKTLP-----PGLLTPTPKL 150 (290)
T ss_dssp ECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC------CCCCC-----TTTTTTCTTC
T ss_pred ECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC------CCccC-----hhhcccccCC
Confidence 8888774 4677777788888888888888887764 47778888888776531 11222 2235667778
Q ss_pred cEeecccCCCCCccccccccccc-cccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEE
Q 000202 1530 ETLSIDVHPGDKRWDKDVKIVIT-EVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKF 1592 (1866)
Q Consensus 1530 ~~L~l~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l 1592 (1866)
+.|+++.+.. ..++. .+..+++|+.|+++.|.+..++..+. ....|+.+.+
T Consensus 151 ~~L~L~~N~l--------~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~----~~~~L~~l~L 202 (290)
T 1p9a_G 151 EKLSLANNNL--------TELPAGLLNGLENLDTLLLQENSLYTIPKGFF----GSHLLPFAFL 202 (290)
T ss_dssp CEEECTTSCC--------SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCCCSEEEC
T ss_pred CEEECCCCcC--------CccCHHHhcCcCCCCEEECCCCcCCccChhhc----ccccCCeEEe
Confidence 8888774432 22332 34667788888888887776553332 2234555554
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-13 Score=166.07 Aligned_cols=155 Identities=20% Similarity=0.293 Sum_probs=83.1
Q ss_pred CCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCC--CCChhhc-------CCCCCcEEecccccCcccCCccc-
Q 000202 1396 CPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIK--SLPETLV-------NLKCLQILILRDCDFLFVLPPEV- 1465 (1866)
Q Consensus 1396 ~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~--~lp~~i~-------~L~~L~~L~L~~~~~~~~lP~~i- 1465 (1866)
.++|+.|++++|.. .+|..+... |++|+|++|.+. .+|..+. ++.+|++|+|++|.+.+.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 34556666665533 556555332 666666666664 3555554 56666666666666666666655
Q ss_pred -cCCCCCcEEEccCCCCCcCChhhcCC-----CccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCC
Q 000202 1466 -GSLECLEVLDLRGTEIKMLPKEIGKL-----TSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPG 1539 (1866)
Q Consensus 1466 -~~L~~L~~L~l~~~~i~~lp~~i~~L-----~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~ 1539 (1866)
+.+++|++|++++|.++.+|..++.+ ++|++|+++++.- ..+ ....++.+++|+.|+++.+..
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l------~~~-----~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS------LNF-----SCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC------CCC-----CTTTCCCCSSCCEEECCSCTT
T ss_pred HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC------ccc-----hHHHhccCCCCCEEECCCCCc
Confidence 66666666666666666666555555 5666666644211 111 112244555555555553321
Q ss_pred CCccccccccccccc--cCCCCCCEEEeecCCcc
Q 000202 1540 DKRWDKDVKIVITEV--SGLTKLSSLSFHFPEIE 1571 (1866)
Q Consensus 1540 ~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~l~ 1571 (1866)
.. ....+..+ ..+++|+.|+++.|.+.
T Consensus 186 ~~-----~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 186 LG-----ERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp CH-----HHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred Cc-----chHHHHHHHhccCCCCCEEECCCCcCc
Confidence 10 00012222 56667777777666544
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=156.74 Aligned_cols=181 Identities=19% Similarity=0.221 Sum_probs=149.1
Q ss_pred CCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcC
Q 000202 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443 (1866)
Q Consensus 1364 ~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~ 1443 (1866)
.+...+.+..+++|+.|++++|.+..++.+..+++|+.|++++| .+..++ . +..+++|++|+|++|.++.+|. +..
T Consensus 52 ~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n-~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~-l~~ 127 (308)
T 1h6u_A 52 GVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGN-PLKNVS-A-IAGLQSIKTLDLTSTQITDVTP-LAG 127 (308)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSC-CCSCCG-G-GTTCTTCCEEECTTSCCCCCGG-GTT
T ss_pred CccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCC-cCCCch-h-hcCCCCCCEEECCCCCCCCchh-hcC
Confidence 34445567788999999999999999888889999999999988 466665 3 5789999999999999999876 999
Q ss_pred CCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhh
Q 000202 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDIL 1523 (1866)
Q Consensus 1444 L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l 1523 (1866)
+++|++|+|++|.+. .+|. ++++++|++|++++|.++.+|. +.++++|++|+++++.- ..++ .+
T Consensus 128 l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l------~~~~-------~l 191 (308)
T 1h6u_A 128 LSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI------SDIS-------PL 191 (308)
T ss_dssp CTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC------CCCG-------GG
T ss_pred CCCCCEEECCCCccC-cCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc------CcCh-------hh
Confidence 999999999999865 4554 8999999999999999999887 99999999999976421 1111 26
Q ss_pred hccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccch
Q 000202 1524 SRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECV 1573 (1866)
Q Consensus 1524 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 1573 (1866)
..+++|+.|+++.+... ... .+..+++|+.|+++.|.+...
T Consensus 192 ~~l~~L~~L~L~~N~l~--------~~~-~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQIS--------DVS-PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp GGCTTCCEEECTTSCCC--------BCG-GGTTCTTCCEEEEEEEEEECC
T ss_pred cCCCCCCEEEccCCccC--------ccc-cccCCCCCCEEEccCCeeecC
Confidence 78999999999965432 222 478999999999999987654
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.40 E-value=7.8e-13 Score=155.69 Aligned_cols=181 Identities=23% Similarity=0.329 Sum_probs=146.9
Q ss_pred CCCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-h
Q 000202 1363 AGLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-L 1441 (1866)
Q Consensus 1363 ~~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i 1441 (1866)
..+...+.+..+++|+.|++++|.+..++.+..+++|++|++++| .+..+++..++.+++|++|+|++|.++.+|.. +
T Consensus 51 ~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 129 (272)
T 3rfs_A 51 SDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129 (272)
T ss_dssp SCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred CCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcCCccCHHHh
Confidence 344555667889999999999999999888889999999999988 67788888789999999999999999988755 7
Q ss_pred cCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCCh
Q 000202 1442 VNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISS 1520 (1866)
Q Consensus 1442 ~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 1520 (1866)
+.+++|++|+|++|.+.+..|..++++++|++|++++|.++.+|.. ++.+++|++|++.++. +..++ .
T Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~------l~~~~-----~ 198 (272)
T 3rfs_A 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ------LKSVP-----D 198 (272)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CSCCC-----T
T ss_pred ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc------CCccC-----H
Confidence 9999999999999987765566679999999999999999988765 6899999999997642 11222 2
Q ss_pred hhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCC
Q 000202 1521 DILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPE 1569 (1866)
Q Consensus 1521 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1569 (1866)
..+..+++|+.|+++.++.. +.+++|+.|++..|.
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~--------------~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWD--------------CTCPGIRYLSEWINK 233 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBC--------------CCTTTTHHHHHHHHH
T ss_pred HHHhCCcCCCEEEccCCCcc--------------ccCcHHHHHHHHHHh
Confidence 34678999999999865321 345677777665544
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.40 E-value=9.6e-13 Score=151.74 Aligned_cols=110 Identities=25% Similarity=0.403 Sum_probs=75.1
Q ss_pred CCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCC-CCCCCh-hhcCCCCCcEEeccc-ccCcccCCc
Q 000202 1387 LQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTR-IKSLPE-TLVNLKCLQILILRD-CDFLFVLPP 1463 (1866)
Q Consensus 1387 l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~-i~~lp~-~i~~L~~L~~L~L~~-~~~~~~lP~ 1463 (1866)
+..+|. -.++|+.|++++| .+..+|+..|..+++|++|++++|. ++.+|. .+.++++|++|+|++ |.+....|.
T Consensus 23 l~~ip~--~~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC--CCCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 666665 2346777777766 5666776666777778888887776 777664 567777788887777 554444445
Q ss_pred cccCCCCCcEEEccCCCCCcCChhhcCCCccc---eeccc
Q 000202 1464 EVGSLECLEVLDLRGTEIKMLPKEIGKLTSLR---YLTVF 1500 (1866)
Q Consensus 1464 ~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~---~L~l~ 1500 (1866)
.++++++|++|++++|.++.+|. ++.+++|+ +|+++
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~ 138 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEIT 138 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEE
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECC
Confidence 67777777788777777777775 66666665 55553
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.3e-12 Score=149.17 Aligned_cols=179 Identities=23% Similarity=0.352 Sum_probs=143.9
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEEeccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILILRD 1454 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~ 1454 (1866)
..+.++++++.+..+|... .++++.|++++| .+..+|+..|..+++|++|+|++|.++.+|.. +..+++|++|+|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 4678999999999988532 268999999988 67788887778999999999999999999866 48899999999999
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEee
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLS 1533 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~ 1533 (1866)
|.+....|..+.++++|++|++++|.++.+|.. ++++++|++|+++++. +..++ ...+..+++|+.|+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~-----~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE------LQSLP-----KGVFDKLTSLKELR 163 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CCCCC-----TTTTTTCTTCCEEE
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc------CCccC-----HhHccCCcccceeE
Confidence 997665556779999999999999999988754 7999999999997642 11222 23467899999999
Q ss_pred cccCCCCCccccccccccccccCCCCCCEEEeecCCccchH
Q 000202 1534 IDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVA 1574 (1866)
Q Consensus 1534 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 1574 (1866)
++.+.... .....+..+++|+.|+++.|.+..++
T Consensus 164 L~~n~l~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 164 LYNNQLKR-------VPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp CCSSCCSC-------CCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ecCCcCcE-------eChhHhccCCCcCEEECCCCcCCcCC
Confidence 98643221 12334788999999999999887654
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.39 E-value=4e-12 Score=147.68 Aligned_cols=177 Identities=23% Similarity=0.298 Sum_probs=137.3
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEeccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILILRD 1454 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~ 1454 (1866)
..+.+++.++.+..+|.... ++++.|+|++| .+..+++..+..+++|++|+|++|.+..++. .+..+++|++|+|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45678889999988885322 68999999987 5667777667889999999999999987764 578999999999999
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEee
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLS 1533 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~ 1533 (1866)
|.+....|..++++++|++|++++|.++.+|.. ++++++|++|+++++. +..++ ...+..+++|+.|+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~-----~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ------LQSIP-----AGAFDKLTNLQTLS 161 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CCCCC-----TTTTTTCTTCCEEE
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc------CCccC-----HHHcCcCcCCCEEE
Confidence 997766667788999999999999999988776 6889999999986532 11222 23467889999999
Q ss_pred cccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1534 IDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1534 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
++.+.... .....+..+++|+.|+++.|.+.+
T Consensus 162 L~~N~l~~-------~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 162 LSTNQLQS-------VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCSSCCSC-------CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCCCcCCc-------cCHHHHhCCCCCCEEEeeCCceeC
Confidence 98543221 223467788999999999998765
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-12 Score=153.79 Aligned_cols=178 Identities=25% Similarity=0.297 Sum_probs=145.6
Q ss_pred CCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCC
Q 000202 1366 TEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLK 1445 (1866)
Q Consensus 1366 ~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~ 1445 (1866)
........+++++.|++.+|.+..++.+..+++|+.|++++| .+..+++ +..+++|++|+|++|.++.+|. ++.++
T Consensus 37 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~ 112 (291)
T 1h6t_A 37 TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLK 112 (291)
T ss_dssp TSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCT
T ss_pred ccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCC
Confidence 333445678899999999999999998889999999999988 5667766 5889999999999999998775 99999
Q ss_pred CCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhc
Q 000202 1446 CLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSR 1525 (1866)
Q Consensus 1446 ~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~ 1525 (1866)
+|++|+|++|.+.. + ..++.+++|++|++++|.++.+ ..++++++|++|+++++.- ..++ .+..
T Consensus 113 ~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l------~~~~-------~l~~ 176 (291)
T 1h6t_A 113 KLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI------SDIV-------PLAG 176 (291)
T ss_dssp TCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCC------CCCG-------GGTT
T ss_pred CCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcc------ccch-------hhcC
Confidence 99999999998654 4 4789999999999999999988 5799999999999976421 1111 1678
Q ss_pred cccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1526 LQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1526 L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
+++|+.|+++.+... .+ ..+..+++|+.|+++.|.+..
T Consensus 177 l~~L~~L~L~~N~i~--------~l-~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 177 LTKLQNLYLSKNHIS--------DL-RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CTTCCEEECCSSCCC--------BC-GGGTTCTTCSEEEEEEEEEEC
T ss_pred CCccCEEECCCCcCC--------CC-hhhccCCCCCEEECcCCcccC
Confidence 999999999865432 22 358889999999999887654
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.38 E-value=4.8e-14 Score=180.35 Aligned_cols=371 Identities=17% Similarity=0.063 Sum_probs=213.4
Q ss_pred CcccEEEccCCcCCccc-ChhHHhcCCCCcEEEccCCCCC-----CCChhhcCCCCCcEEecccccCcccCCcccc-CCC
Q 000202 1397 PNLLTLFLQRNCRLRVI-PPSFFELMTSLKVLNLSKTRIK-----SLPETLVNLKCLQILILRDCDFLFVLPPEVG-SLE 1469 (1866)
Q Consensus 1397 ~~L~~L~L~~~~~l~~~-p~~~~~~l~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~-~L~ 1469 (1866)
++|+.|+|++|. +... ...++..+++|++|+|++|.+. .+|..+..+++|++|+|++|.+....+..+. .+.
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 578889998774 4433 3444688999999999999998 5678899999999999999986554443333 455
Q ss_pred ----CCcEEEccCCCCC-----cCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCCC
Q 000202 1470 ----CLEVLDLRGTEIK-----MLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGD 1540 (1866)
Q Consensus 1470 ----~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~ 1540 (1866)
+|++|++++|.++ .+|..+.++++|++|+++++. +.......+ .......+++|+.|+++.+...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l-----~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLL-----CEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHH-----HHHHTSTTCCCCEEECTTSCCB
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHH-----HHHHhcCCCcceEEECCCCCCC
Confidence 7999999999988 468889999999999997643 111000000 0001123457999999865432
Q ss_pred CccccccccccccccCCCCCCEEEeecCCccchHH-hhcc-CccccCCcceeEEEEeccccccc-ccccccccccccCcc
Q 000202 1541 KRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAE-FLKG-SAWNNQQLTEFKFVVGHDVKSIV-SWVTDYVQCDYNQHD 1617 (1866)
Q Consensus 1541 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~ 1617 (1866)
. .....+...+..+++|+.|+++.|.+..... .+.. ......+|+.|.+..+ .+.... ..+...+. ..
T Consensus 156 ~---~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~-----~~ 226 (461)
T 1z7x_W 156 A---ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVA-----SK 226 (461)
T ss_dssp G---GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHH-----HC
T ss_pred H---HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHH-----hC
Confidence 1 1112234556778899999999988754321 1111 0012335666655311 111000 00000000 00
Q ss_pred ceeEeecCCC--CChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccC-CCccccccccccc
Q 000202 1618 RCLRFVNGKN--VPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDT-KEHTTAVFPSLEN 1694 (1866)
Q Consensus 1618 ~~L~~~~~~~--~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~-~~~~~~~f~~L~~ 1694 (1866)
..++.+.... +.......+ .......+++|++|++++| .+...+.. .......+++|+.
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l-----------------~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~ 288 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAEL-----------------CPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKE 288 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHH-----------------HHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCE
T ss_pred CCccEEeccCCcCChHHHHHH-----------------HHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcce
Confidence 1111111111 111111111 0001234789999999997 45442100 0012234789999
Q ss_pred ccccccccccccccccccc---cccccccEEeEecCccCcccc---chhhhhhccccceeeeccccccceecccCccccc
Q 000202 1695 LTLNHLWDLTCIWQGILPE---GSFAELRILSIHACRHLEYVF---TCSMIQFLAKLEELTVEYCLAVKSIILDGEITYS 1768 (1866)
Q Consensus 1695 L~l~~~~~L~~~~~~~~~~---~~~p~L~~L~I~~C~~L~~l~---~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~ 1768 (1866)
|+++++. +.......+.. ...++|+.|++++|. ++... ....+..+++|++|++++| .+....... . ..
T Consensus 289 L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~-l-~~ 363 (461)
T 1z7x_W 289 LSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRE-L-CQ 363 (461)
T ss_dssp EECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHH-H-HH
T ss_pred EECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHH-H-HH
Confidence 9998752 22211001111 123699999999994 55432 1235667899999999998 343321110 0 00
Q ss_pred ccc-CCCCcCEEeccCCcccc-----cccc--CCCCCccEEEEEcCc
Q 000202 1769 SCI-MLPSLKKLRLHHLPELA-----NIWR--NDWPSLEYISFYGCP 1807 (1866)
Q Consensus 1769 ~~~-~lp~L~~L~L~~c~~L~-----~i~~--~~lpsLe~L~I~~Cp 1807 (1866)
.+. ..++|+.|+|++|. +. .+.. ..+++|++|++++|+
T Consensus 364 ~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 364 GLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 111 26899999999995 54 3322 258999999999984
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.2e-12 Score=150.94 Aligned_cols=180 Identities=22% Similarity=0.262 Sum_probs=138.5
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~ 1451 (1866)
++++.|++++|.+..++ .+..+++|++|++++| .+..+++..+..+++|++|+|++|.+..+| ..+.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 46899999999998776 4678999999999988 677788777788999999999999998776 6789999999999
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCc--CChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccC
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKM--LPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQAL 1529 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L 1529 (1866)
+++|.+....+..++++++|++|++++|.++. +|..++++++|++|+++++.- ..+ +...+..+++|
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l------~~~-----~~~~~~~l~~L 175 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI------QSI-----YCTDLRVLHQM 175 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC------CEE-----CGGGGHHHHTC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC------CcC-----CHHHhhhhhhc
Confidence 99998776666679999999999999999986 688999999999999876421 111 12234555555
Q ss_pred c----EeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchH
Q 000202 1530 E----TLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVA 1574 (1866)
Q Consensus 1530 ~----~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 1574 (1866)
+ .|+++.+.. ..+........+|+.|+++.|.+..++
T Consensus 176 ~~l~l~L~ls~n~l--------~~~~~~~~~~~~L~~L~L~~n~l~~~~ 216 (276)
T 2z62_A 176 PLLNLSLDLSLNPM--------NFIQPGAFKEIRLKELALDTNQLKSVP 216 (276)
T ss_dssp TTCCEEEECCSSCC--------CEECTTSSCSCCEEEEECCSSCCSCCC
T ss_pred cccceeeecCCCcc--------cccCccccCCCcccEEECCCCceeecC
Confidence 5 677764332 223333444457888999888877654
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.9e-13 Score=163.06 Aligned_cols=133 Identities=14% Similarity=0.096 Sum_probs=74.6
Q ss_pred CCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCccc-CCccccCCCCCcEEEccCCCCC-cCChhhcCCCccceecc
Q 000202 1422 TSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFV-LPPEVGSLECLEVLDLRGTEIK-MLPKEIGKLTSLRYLTV 1499 (1866)
Q Consensus 1422 ~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~-lP~~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l 1499 (1866)
++|++|++++|.+...+..+.++++|++|+|++|.+... +|..+.++++|++|++++|.++ ..|..++++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 667777777776665555566667777777777665443 5666666777777777777666 44556666777777766
Q ss_pred ccccccCCCccccCCCCCCChhhhhccccCcEeecccCCCCCccccccccccccccCCC-CCCEEEeecC
Q 000202 1500 FFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLT-KLSSLSFHFP 1568 (1866)
Q Consensus 1500 ~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~ 1568 (1866)
.+|...+... + ...+.++++|+.|+++.+.... ...+...+..++ +|+.|+++.|
T Consensus 150 ~~~~~l~~~~---l------~~~~~~~~~L~~L~l~~~~~l~-----~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 150 SGCSGFSEFA---L------QTLLSSCSRLDELNLSWCFDFT-----EKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBSCCHHH---H------HHHHHHCTTCCEEECCCCTTCC-----HHHHHHHHHHSCTTCCEEECCSC
T ss_pred CCCCCCCHHH---H------HHHHhcCCCCCEEcCCCCCCcC-----hHHHHHHHHhcccCCCEEEeCCC
Confidence 5543221100 0 1124455666666665431110 001233345556 6666666554
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-12 Score=167.91 Aligned_cols=114 Identities=19% Similarity=0.216 Sum_probs=51.0
Q ss_pred cCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecc
Q 000202 1376 HAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILR 1453 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~ 1453 (1866)
+++.|++++|.+..++ .+..+++|++|+|++|. +...++ ++.+++|++|+|++|.++.+|.. ++|++|+|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECc
Confidence 4555555555554443 23444555555555442 222222 34445555555555544444321 445555555
Q ss_pred cccCcccCCccccCCCCCcEEEccCCCCCcC-ChhhcCCCccceecc
Q 000202 1454 DCDFLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTV 1499 (1866)
Q Consensus 1454 ~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l 1499 (1866)
+|.+.+..| ..+++|++|++++|.++.+ |..++++++|++|++
T Consensus 108 ~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 151 (487)
T 3oja_A 108 NNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (487)
T ss_dssp SSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC
T ss_pred CCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEEC
Confidence 554333222 1234455555555554443 223444444444444
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.34 E-value=4e-12 Score=165.42 Aligned_cols=179 Identities=25% Similarity=0.303 Sum_probs=140.2
Q ss_pred CCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCC
Q 000202 1365 LTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNL 1444 (1866)
Q Consensus 1365 ~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L 1444 (1866)
+........+.+|+.|++.+|.+..++.+..+++|+.|+|++| .+..+++ +..+++|++|+|++|.+..+| .++.|
T Consensus 33 i~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l 108 (605)
T 1m9s_A 33 VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDL 108 (605)
T ss_dssp TTSEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTC
T ss_pred cccccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCCCCCCCh-hhccC
Confidence 3334445678888999999999998888888999999999987 5666666 578999999999999998876 68899
Q ss_pred CCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhh
Q 000202 1445 KCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILS 1524 (1866)
Q Consensus 1445 ~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~ 1524 (1866)
++|++|+|++|.+.. + ..++.|++|+.|+|++|.++.+ ..++.|++|+.|+++.+.- . .++ .+.
T Consensus 109 ~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l-~-----~~~-------~l~ 172 (605)
T 1m9s_A 109 KKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI-S-----DIV-------PLA 172 (605)
T ss_dssp TTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCC-C-----CCG-------GGT
T ss_pred CCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcC-C-----Cch-------hhc
Confidence 999999999998554 4 4688899999999999999888 5788999999998876421 1 111 167
Q ss_pred ccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1525 RLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1525 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
.+++|+.|+++.|... .+ ..+..+++|+.|+|+.|.+..
T Consensus 173 ~l~~L~~L~Ls~N~i~--------~l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHIS--------DL-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TCTTCCEEECCSSCCC--------BC-GGGTTCTTCSEEECCSEEEEC
T ss_pred cCCCCCEEECcCCCCC--------CC-hHHccCCCCCEEEccCCcCcC
Confidence 7889999999865432 12 467888999999998887654
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-12 Score=150.29 Aligned_cols=182 Identities=23% Similarity=0.250 Sum_probs=143.4
Q ss_pred CccccccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCC
Q 000202 1370 SEEEWTHAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKC 1446 (1866)
Q Consensus 1370 ~~~~~~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~ 1446 (1866)
.+..+++|+.|++++|.+..++. +..+++|+.|++++| .+..+++..+..+++|++|++++|.+..++. .++.+++
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 125 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence 46778999999999999998774 778999999999988 5777777777899999999999999998875 7999999
Q ss_pred CcEEecccccCcc-cCCccccCCCCCcEEEccCCCCCcCC-hhhcCCCccc----eeccccccccCCCccccCCCCCCCh
Q 000202 1447 LQILILRDCDFLF-VLPPEVGSLECLEVLDLRGTEIKMLP-KEIGKLTSLR----YLTVFFFGSMYKSEYIKLPPDLISS 1520 (1866)
Q Consensus 1447 L~~L~L~~~~~~~-~lP~~i~~L~~L~~L~l~~~~i~~lp-~~i~~L~~L~----~L~l~~~~~~~~~~~~~l~~~~~~~ 1520 (1866)
|++|+|++|.+.. .+|..++++++|++|++++|.++.+| ..+..+++|+ +|++++. ....++..
T Consensus 126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n------~l~~~~~~---- 195 (276)
T 2z62_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN------PMNFIQPG---- 195 (276)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS------CCCEECTT----
T ss_pred CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC------cccccCcc----
Confidence 9999999999765 37999999999999999999999876 4577777777 5555432 12222222
Q ss_pred hhhhccccCcEeecccCCCCCccccccccccc-cccCCCCCCEEEeecCCccc
Q 000202 1521 DILSRLQALETLSIDVHPGDKRWDKDVKIVIT-EVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1521 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
.....+|+.|+++.+... .++. .+..+++|+.|+++.|.+.+
T Consensus 196 --~~~~~~L~~L~L~~n~l~--------~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 196 --AFKEIRLKELALDTNQLK--------SVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp --SSCSCCEEEEECCSSCCS--------CCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred --ccCCCcccEEECCCCcee--------ecCHhHhcccccccEEEccCCcccc
Confidence 123347999999864422 2333 35789999999999998764
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-12 Score=148.30 Aligned_cols=191 Identities=12% Similarity=0.275 Sum_probs=149.3
Q ss_pred ccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccC-CCCCCCC-hhhcCCCCCcEE
Q 000202 1375 THAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSK-TRIKSLP-ETLVNLKCLQIL 1450 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~-~~i~~lp-~~i~~L~~L~~L 1450 (1866)
.+++.|++.+|.+..+|. +..+++|+.|++++|..+..+++..|..+++|++|+|++ |.++.+| ..+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 478999999999998874 678999999999988658889987789999999999998 9999887 568899999999
Q ss_pred ecccccCcccCCccccCCCCCc---EEEccCC-CCCcCChh-hcCCCccc-eeccccccccCCCccccCCCCCCChhhhh
Q 000202 1451 ILRDCDFLFVLPPEVGSLECLE---VLDLRGT-EIKMLPKE-IGKLTSLR-YLTVFFFGSMYKSEYIKLPPDLISSDILS 1524 (1866)
Q Consensus 1451 ~L~~~~~~~~lP~~i~~L~~L~---~L~l~~~-~i~~lp~~-i~~L~~L~-~L~l~~~~~~~~~~~~~l~~~~~~~~~l~ 1524 (1866)
++++|.+. .+|. ++.+.+|+ +|++++| .++.+|.. +.++++|+ +|++++.. ...++.. .+.
T Consensus 111 ~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~------l~~i~~~-----~~~ 177 (239)
T 2xwt_C 111 GIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG------FTSVQGY-----AFN 177 (239)
T ss_dssp EEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC------CCEECTT-----TTT
T ss_pred eCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC------CcccCHh-----hcC
Confidence 99999855 4886 88888888 9999999 99998765 89999999 99986532 1233332 233
Q ss_pred ccccCcEeecccCCCCCccccccccc-cccccCC-CCCCEEEeecCCccchHHhhccCccccCCcceeEE
Q 000202 1525 RLQALETLSIDVHPGDKRWDKDVKIV-ITEVSGL-TKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKF 1592 (1866)
Q Consensus 1525 ~L~~L~~L~l~~~~~~~~~~~~~~~~-~~~l~~l-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l 1592 (1866)
. ++|+.|+++.+.. ...+ ...+..+ ++|+.|+++.|.+..++.. ...+|+.|.+
T Consensus 178 ~-~~L~~L~L~~n~~-------l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~------~~~~L~~L~l 233 (239)
T 2xwt_C 178 G-TKLDAVYLNKNKY-------LTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK------GLEHLKELIA 233 (239)
T ss_dssp T-CEEEEEECTTCTT-------CCEECTTTTTTCSBCCSEEECTTCCCCCCCCT------TCTTCSEEEC
T ss_pred C-CCCCEEEcCCCCC-------cccCCHHHhhccccCCcEEECCCCccccCChh------HhccCceeec
Confidence 3 6899999985531 1122 3456778 9999999999998765422 3455666654
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.3e-12 Score=139.45 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=100.4
Q ss_pred CccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCC-CChhhcCCCCCc
Q 000202 1370 SEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKS-LPETLVNLKCLQ 1448 (1866)
Q Consensus 1370 ~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~-lp~~i~~L~~L~ 1448 (1866)
+...+++++.+++++|.+..+|.+..+++|+.|++++| .+..++ .+..+++|++|++++|.++. .|..++.+++|+
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n-~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNI-HATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESC-CCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred ChhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCC-CCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 34667888899999888888887778888888888877 454443 24678888888888888874 677788888888
Q ss_pred EEecccccCcccCCccccCCCCCcEEEccCCC-CCcCChhhcCCCccceeccccc
Q 000202 1449 ILILRDCDFLFVLPPEVGSLECLEVLDLRGTE-IKMLPKEIGKLTSLRYLTVFFF 1502 (1866)
Q Consensus 1449 ~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~-i~~lp~~i~~L~~L~~L~l~~~ 1502 (1866)
+|+|++|.+....|..++++++|++|++++|. +..+| .+..+++|++|+++++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC
Confidence 88888888777777788888888888888886 77776 5777778888877553
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-11 Score=149.95 Aligned_cols=120 Identities=21% Similarity=0.302 Sum_probs=81.2
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCC-CCC-hhhcCCCCCcE-Eeccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIK-SLP-ETLVNLKCLQI-LILRD 1454 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~-~lp-~~i~~L~~L~~-L~L~~ 1454 (1866)
++++.+++.++.+|.-. .++++.|+|++| .+..+|+..|.++++|++|+|++|.+. .+| ..+.+|++|+. +.+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 45677778888887422 357888888877 677788777778888888888888864 455 35677777765 44455
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceecc
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTV 1499 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l 1499 (1866)
|.+....|..+.++++|++|++++|.++.+|.. +....++..|++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l 135 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhh
Confidence 665555566778888888888888887776642 334444444444
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-11 Score=140.26 Aligned_cols=152 Identities=23% Similarity=0.301 Sum_probs=126.9
Q ss_pred ccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~ 1451 (1866)
++++.|++.+|.+..++. +..+++|+.|+|++| .+..+++..+..+++|++|+|++|.++.+| ..+..+++|++|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 578999999999997763 678999999999988 677788777789999999999999999887 4578999999999
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCcCCh-hhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCc
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALE 1530 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~ 1530 (1866)
|++|.+.+..|..++++++|++|++++|.++.+|. .++++++|++|++.++. +..++ ...+..+++|+
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~------l~~~~-----~~~~~~l~~L~ 182 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ------LQSVP-----HGAFDRLGKLQ 182 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CSCCC-----TTTTTTCTTCC
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc------CCccC-----HHHHhCCCCCC
Confidence 99998765555567999999999999999999987 58999999999997532 11222 23467889999
Q ss_pred EeecccCC
Q 000202 1531 TLSIDVHP 1538 (1866)
Q Consensus 1531 ~L~l~~~~ 1538 (1866)
.|+++.++
T Consensus 183 ~L~l~~N~ 190 (251)
T 3m19_A 183 TITLFGNQ 190 (251)
T ss_dssp EEECCSCC
T ss_pred EEEeeCCc
Confidence 99998654
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.8e-11 Score=135.53 Aligned_cols=123 Identities=22% Similarity=0.297 Sum_probs=101.6
Q ss_pred CcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEEecccc
Q 000202 1377 AKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILILRDC 1455 (1866)
Q Consensus 1377 l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~ 1455 (1866)
.+.+++.++.+..+|... .++|+.|+|++| .+..+++..+..+++|++|+|++|.+..+|.. +..+++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 356888888888888532 388999999988 56667666668899999999999999988854 688999999999999
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceecccc
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~ 1501 (1866)
.+....|..++.+++|++|++++|.++.+|..+.++++|++|++++
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ 144 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC
Confidence 8765555567889999999999999999999899999999998864
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=157.27 Aligned_cols=191 Identities=16% Similarity=0.163 Sum_probs=140.6
Q ss_pred CccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcE
Q 000202 1370 SEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQI 1449 (1866)
Q Consensus 1370 ~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~ 1449 (1866)
.+..+++|+.|++++|.+...+++..+++|+.|+|++| .+..+|. .++|++|+|++|.+..+|.. .+++|++
T Consensus 53 ~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~l~~-----~~~L~~L~L~~N~l~~~~~~--~l~~L~~ 124 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN-YVQELLV-----GPSIETLHAANNNISRVSCS--RGQGKKN 124 (487)
T ss_dssp GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSS-EEEEEEE-----CTTCCEEECCSSCCCCEEEC--CCSSCEE
T ss_pred HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCC-cCCCCCC-----CCCcCEEECcCCcCCCCCcc--ccCCCCE
Confidence 46778899999999999987666888999999999988 5666653 37899999999999877753 5688999
Q ss_pred EecccccCcccCCccccCCCCCcEEEccCCCCCcC-Chhhc-CCCccceeccccccccCCCccccCCCCCCChhhhhccc
Q 000202 1450 LILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIG-KLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQ 1527 (1866)
Q Consensus 1450 L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~l-p~~i~-~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~ 1527 (1866)
|+|++|.+.+..|..++++++|++|++++|.++.+ |..+. .+++|++|+++++.- ..++. ...++
T Consensus 125 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l------~~~~~-------~~~l~ 191 (487)
T 3oja_A 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI------YDVKG-------QVVFA 191 (487)
T ss_dssp EECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC------CEEEC-------CCCCT
T ss_pred EECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc------ccccc-------cccCC
Confidence 99999988877788888899999999999988864 55565 789999998876431 11111 23477
Q ss_pred cCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEE
Q 000202 1528 ALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFV 1593 (1866)
Q Consensus 1528 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~ 1593 (1866)
+|+.|+++.+. ...++..+..+++|+.|++++|.+..++..+ ...++|+.+.+.
T Consensus 192 ~L~~L~Ls~N~--------l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l----~~l~~L~~L~l~ 245 (487)
T 3oja_A 192 KLKTLDLSSNK--------LAFMGPEFQSAAGVTWISLRNNKLVLIEKAL----RFSQNLEHFDLR 245 (487)
T ss_dssp TCCEEECCSSC--------CCEECGGGGGGTTCSEEECTTSCCCEECTTC----CCCTTCCEEECT
T ss_pred CCCEEECCCCC--------CCCCCHhHcCCCCccEEEecCCcCcccchhh----ccCCCCCEEEcC
Confidence 78888887443 2235556777788888888888877654322 233456666553
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.23 E-value=8.8e-11 Score=143.60 Aligned_cols=97 Identities=15% Similarity=0.246 Sum_probs=57.7
Q ss_pred cEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEecccccCcccCCc-cccCCCCCcE-EEc
Q 000202 1400 LTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILILRDCDFLFVLPP-EVGSLECLEV-LDL 1476 (1866)
Q Consensus 1400 ~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lP~-~i~~L~~L~~-L~l 1476 (1866)
++++.+++ .+..+|..+ .++|++|+|++|+|+.+|. .+.+|++|++|+|++|.+.+.+|. .+.+|++|+. +.+
T Consensus 12 ~~v~C~~~-~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQES-KVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEEST-TCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCC-CCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 44555544 566666654 3466777777777777764 466777777777777766555553 4556666554 444
Q ss_pred cCCCCCcCC-hhhcCCCccceeccc
Q 000202 1477 RGTEIKMLP-KEIGKLTSLRYLTVF 1500 (1866)
Q Consensus 1477 ~~~~i~~lp-~~i~~L~~L~~L~l~ 1500 (1866)
++|.++.+| ..+..+++|++|++.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~ 112 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLIS 112 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEE
T ss_pred cCCcccccCchhhhhcccccccccc
Confidence 556666553 335555666665553
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-11 Score=147.33 Aligned_cols=180 Identities=18% Similarity=0.164 Sum_probs=138.3
Q ss_pred ccccCcEEEccCCCCC-CCCC-C--CCCCcccEEEccCCcCCcccChhHHhcC-----CCCcEEEccCCCCCCCC-hhhc
Q 000202 1373 EWTHAKMIFFMDNDLQ-TLPG-R--PSCPNLLTLFLQRNCRLRVIPPSFFELM-----TSLKVLNLSKTRIKSLP-ETLV 1442 (1866)
Q Consensus 1373 ~~~~l~~l~l~~~~l~-~l~~-~--~~~~~L~~L~L~~~~~l~~~p~~~~~~l-----~~L~~L~Ls~~~i~~lp-~~i~ 1442 (1866)
.+++|+.|++++|.+. .+|. + ..+++|+.|+|++| .+..+|..+ +.+ ++|++|+|++|.+..+| ..++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 4789999999999998 5664 3 78999999999988 456666544 556 89999999999999877 7899
Q ss_pred CCCCCcEEecccccCccc--CCccc--cCCCCCcEEEccCCCCCcCC---hh-hcCCCccceeccccccccCCCccccCC
Q 000202 1443 NLKCLQILILRDCDFLFV--LPPEV--GSLECLEVLDLRGTEIKMLP---KE-IGKLTSLRYLTVFFFGSMYKSEYIKLP 1514 (1866)
Q Consensus 1443 ~L~~L~~L~L~~~~~~~~--lP~~i--~~L~~L~~L~l~~~~i~~lp---~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~ 1514 (1866)
.+++|++|+|++|.+.+. +|..+ +++++|++|++++|.++.+| .. +.++++|++|+++++.- . ..+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~-----~~~ 244 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL-R-----DAA 244 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC-C-----SSC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC-C-----ccc
Confidence 999999999999997665 34555 89999999999999999554 33 46889999999976421 1 111
Q ss_pred CCCCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchH
Q 000202 1515 PDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVA 1574 (1866)
Q Consensus 1515 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 1574 (1866)
+...+..+++|+.|+++.+.. ..++..+. ++|+.|+++.|.+..++
T Consensus 245 ----~~~~~~~l~~L~~L~Ls~N~l--------~~ip~~~~--~~L~~L~Ls~N~l~~~p 290 (312)
T 1wwl_A 245 ----GAPSCDWPSQLNSLNLSFTGL--------KQVPKGLP--AKLSVLDLSYNRLDRNP 290 (312)
T ss_dssp ----CCSCCCCCTTCCEEECTTSCC--------SSCCSSCC--SEEEEEECCSSCCCSCC
T ss_pred ----chhhhhhcCCCCEEECCCCcc--------Chhhhhcc--CCceEEECCCCCCCCCh
Confidence 011244678999999985442 23455554 79999999999988763
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.9e-11 Score=134.93 Aligned_cols=126 Identities=29% Similarity=0.414 Sum_probs=94.1
Q ss_pred ccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~ 1451 (1866)
++++.|++++|.+..++. +..+++|+.|++++| .+..+|...|..+++|++|+|++|.++.+|.. ++.+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 467788888888877664 457788888888876 56677777667788888888888888777654 57788888888
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceecccc
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~ 1501 (1866)
|++|.+.+..|..++++++|++|++++|.++.+|.. +.++++|++|++.+
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecC
Confidence 888876554444567788888888888888777665 67778888887754
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-10 Score=141.58 Aligned_cols=283 Identities=13% Similarity=0.130 Sum_probs=169.6
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCC------CHHHHHHHHHH
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYW------NTRKIQKQVLR 1052 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~~~~~i~~ 1052 (1866)
.+.||+++++++.+++... +++.|+|++|+|||||++++++.. . .+|+++.... +...+.+.+.+
T Consensus 13 ~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (350)
T 2qen_A 13 DIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKELQS 83 (350)
T ss_dssp GSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHHHHH
Confidence 4678999999998888653 689999999999999999996532 2 6777765432 56666676666
Q ss_pred Hhcc---------------C-CC--CccCHHHHHHHHHHHhCC-CcEEEEEeCCCCccc---------hhhhcCCCCCCC
Q 000202 1053 QLSL---------------H-CK--DRETDAQVAEKLWQVLNG-EKFLLLLDDVWEQID---------LEAVGIPVPGSE 1104 (1866)
Q Consensus 1053 ~l~~---------------~-~~--~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~~~---------~~~l~~~l~~~~ 1104 (1866)
.+.. . .. ...+..++...+.+.... ++++|||||++.... +..+..... ..
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~-~~ 162 (350)
T 2qen_A 84 TISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD-SL 162 (350)
T ss_dssp HSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH-HC
T ss_pred HHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH-hc
Confidence 5532 0 00 113445555666555543 389999999986432 222221111 12
Q ss_pred CCcEEEEccCChhhhcc----------C--CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHH
Q 000202 1105 NGSKIFMASRELDVCRN----------M--DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLL 1172 (1866)
Q Consensus 1105 ~gs~IivTTR~~~v~~~----------~--~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLA 1172 (1866)
.+.++|+|++...+... . .....+.+.+|+.+++.+++.+.+.......+ .+.+..|...|+|.|++
T Consensus 163 ~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~-~~~~~~i~~~tgG~P~~ 241 (350)
T 2qen_A 163 PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP-ENEIEEAVELLDGIPGW 241 (350)
T ss_dssp TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC-HHHHHHHHHHHTTCHHH
T ss_pred CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhCCCHHH
Confidence 46789999887543111 1 11247899999999999999876532211111 34577899999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHhhhCCCCccccccchhhHHHHHHHhHhcc---CCcchhHHHHhhcCCCCCccccHHHHHH
Q 000202 1173 TIVTAKALAGERNVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQL---KDHDVKSCFLHCSLFPEDREVSIVEFID 1249 (1866)
Q Consensus 1173 i~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~Sy~~L---~~~~lk~cfly~s~Fp~~~~i~~~~Li~ 1249 (1866)
+..++..+....+...+.. +. .+.+...+.-.+..+ ++. .+..+..+|. + ..+...+..
T Consensus 242 l~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~~~~~~l~~l~~~~~~-~~~~l~~la~---g-~~~~~~l~~ 303 (350)
T 2qen_A 242 LVVFGVEYLRNGDFGRAMK--RT-----------LEVAKGLIMGELEELRRRSPR-YVDILRAIAL---G-YNRWSLIRD 303 (350)
T ss_dssp HHHHHHHHHHHCCHHHHHH--HH-----------HHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHT---T-CCSHHHHHH
T ss_pred HHHHHHHHhccccHhHHHH--HH-----------HHHHHHHHHHHHHHHHhCChh-HHHHHHHHHh---C-CCCHHHHHH
Confidence 9999876532122222111 10 011111111112222 554 7888888887 2 245555544
Q ss_pred HHHHc--CccchhhHhHHHhHHHHHHHHHHhhhhhcccccCcccc-hhHHHHH
Q 000202 1250 YCIQE--GIIVGTLANAHKRGHQIVDVLVDASLLLINEVHNSIRM-PGLMKDL 1299 (1866)
Q Consensus 1250 ~W~ae--G~i~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~m-hdlv~dl 1299 (1866)
...+. |. .......+++.|.+.+++... .+.|.+ |.++++.
T Consensus 304 ~~~~~~~~~-------~~~~~~~~l~~L~~~gli~~~--~~~y~~~~p~~~~~ 347 (350)
T 2qen_A 304 YLAVKGTKI-------PEPRLYALLENLKKMNWIVEE--DNTYKIADPVVATV 347 (350)
T ss_dssp HHHHTTCCC-------CHHHHHHHHHHHHHTTSEEEE--TTEEEESSHHHHHH
T ss_pred HHHHHhCCC-------CHHHHHHHHHHHHhCCCEEec--CCEEEEecHHHHHH
Confidence 43221 21 123456789999999999754 244554 5566654
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.22 E-value=8.5e-12 Score=145.63 Aligned_cols=161 Identities=18% Similarity=0.199 Sum_probs=71.4
Q ss_pred ccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccC
Q 000202 1382 FMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVL 1461 (1866)
Q Consensus 1382 l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~l 1461 (1866)
+..+.+..++.+..+++|+.|++++| .+..+| . ++.+++|++|+|++|.++.+|. ++.+++|++|+|++|.+. .+
T Consensus 26 l~~~~i~~~~~~~~l~~L~~L~l~~n-~i~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~-~l 100 (263)
T 1xeu_A 26 LGKQSVTDLVSQKELSGVQNFNGDNS-NIQSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLK-NL 100 (263)
T ss_dssp HTCSCTTSEECHHHHTTCSEEECTTS-CCCCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCS-CC
T ss_pred hcCCCcccccchhhcCcCcEEECcCC-Ccccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccC-Cc
Confidence 33444444333334444444444444 333333 1 2344445555555554444444 444455555555544422 23
Q ss_pred CccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCCCC
Q 000202 1462 PPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDK 1541 (1866)
Q Consensus 1462 P~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 1541 (1866)
|.... .+|++|++++|.++.+| .++++++|++|+++++. +..+ ..+..+++|+.|+++.+...
T Consensus 101 ~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~------i~~~-------~~l~~l~~L~~L~L~~N~i~- 163 (263)
T 1xeu_A 101 NGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK------LKSI-------VMLGFLSKLEVLDLHGNEIT- 163 (263)
T ss_dssp TTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC------CCBC-------GGGGGCTTCCEEECTTSCCC-
T ss_pred Ccccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCc------CCCC-------hHHccCCCCCEEECCCCcCc-
Confidence 32211 44555555555444443 34445555555443321 0000 12344555555555533211
Q ss_pred ccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1542 RWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1542 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
.. ..+..+++|+.|+++.|.+..
T Consensus 164 -------~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 164 -------NT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp -------BC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred -------ch-HHhccCCCCCEEeCCCCcccC
Confidence 11 345566677777776665443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.21 E-value=5.7e-11 Score=140.82 Aligned_cols=176 Identities=23% Similarity=0.264 Sum_probs=147.5
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEec
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILIL 1452 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L 1452 (1866)
++++.|++++|.+..++ .+..+++|+.|+|++| .+..++.. +.+++|++|+|++|.+..+|..+..+++|++|+|
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC--SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC--CCCCcCCEEECCCCcCCcCchhhccCCCCCEEEC
Confidence 57899999999998765 4678999999999988 56667654 6799999999999999999999999999999999
Q ss_pred ccccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcE
Q 000202 1453 RDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALET 1531 (1866)
Q Consensus 1453 ~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~ 1531 (1866)
++|.+.+..|..++++++|++|++++|.++.+|.. +..+++|++|+++++. +..++. ..+..+++|+.
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~------l~~l~~-----~~~~~l~~L~~ 176 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN------LTELPA-----GLLNGLENLDT 176 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC------CSCCCT-----TTTTTCTTCCE
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc------CCccCH-----HHhcCcCCCCE
Confidence 99997766667899999999999999999999876 6899999999996532 222332 34678999999
Q ss_pred eecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1532 LSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1532 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
|+++.+. ...++..+..+.+|+.|+++.|...+
T Consensus 177 L~L~~N~--------l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 177 LLLQENS--------LYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp EECCSSC--------CCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred EECCCCc--------CCccChhhcccccCCeEEeCCCCccC
Confidence 9998543 33577778888899999999998765
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.21 E-value=5.9e-11 Score=134.43 Aligned_cols=120 Identities=23% Similarity=0.395 Sum_probs=60.9
Q ss_pred EEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEecccccC
Q 000202 1379 MIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRDCDF 1457 (1866)
Q Consensus 1379 ~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~ 1457 (1866)
.+++.++.+..+|... .++|+.|++++| .+..+++..|..+++|++|+|++|.+..+ |..+.++.+|++|+|++|.+
T Consensus 15 ~v~c~~~~l~~iP~~l-~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL-PETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSC-CTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCcc-CcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 3445555555555311 145555555554 34445544445555555555555555544 44555555555555555553
Q ss_pred cccCCccccCCCCCcEEEccCCCCCcC-ChhhcCCCccceeccc
Q 000202 1458 LFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTVF 1500 (1866)
Q Consensus 1458 ~~~lP~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~ 1500 (1866)
....+..+.++++|++|+|++|.++.+ |..+..+++|++|+++
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence 322222345555555555555555544 2335555555555554
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.9e-11 Score=149.07 Aligned_cols=244 Identities=12% Similarity=0.089 Sum_probs=144.0
Q ss_pred CCCceeehhhHHHHHHhh-hc--CC--CCcEEEEE--EecCCCchhHHHHHHHHhhhccc-----cc-eEEEEeeccccc
Q 000202 185 SKDLIGVEWRIKEIESLL-RT--GS--AGVYKLGI--WGIGGIGKTTIAGAVFNKISRHF-----EG-SYFACNVRAAEE 251 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L-~~--~~--~~~~~i~I--~G~gGiGKTtLA~~~~~~~~~~f-----~~-~~~~~~~~~~~~ 251 (1866)
+..|+||+.+++++.++| .. .+ ...+.+.| +|++|+||||||++++++....+ .. .+|+... .
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 96 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF----N 96 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG----G
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECC----C
Confidence 468999999999999998 42 11 23445666 99999999999999999765532 22 3344321 2
Q ss_pred cccHHHHHHHHHHHHhccccccCcc-chhHHHHHHHhh--cCcEEEEEecCCCH--------HHHHHHhhccCCC---C-
Q 000202 252 TGRLDDLRKELLSKLLNDRNVKNFQ-NISVNFQSKRLA--RKKVLIVFDDVNHP--------RQIELLIGRLDRF---A- 316 (1866)
Q Consensus 252 ~~~~~~l~~~ll~~~~~~~~~~~~~-~~~~~~l~~~L~--~k~~LlVlDdv~~~--------~~~~~l~~~~~~~---~- 316 (1866)
......+..+++..+.......... ......+.+.+. +++++|||||++.. +.+..+...+... +
T Consensus 97 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 176 (412)
T 1w5s_A 97 APNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG 176 (412)
T ss_dssp CCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTS
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCC
Confidence 2334567777777664332110110 111234444453 67999999999753 3344333332211 2
Q ss_pred -CCCEEEEEccccchhccC---------ccceeeecCCCCHHHHHHHHHhhc---CCCCCCChhHHHHHHHHHHHhC---
Q 000202 317 -SGSQVIITTRDKQVLTNC---------EVDHIYQMKELVHADAHKLFTQCA---FRGDHLDAGYTELAHKALKYAQ--- 380 (1866)
Q Consensus 317 -~gs~IiiTTR~~~v~~~~---------~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~--- 380 (1866)
....||+||++..+.... .....+++++|+.+++.++|...+ +..... ..+....+++.++
T Consensus 177 ~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 177 VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVW---EPRHLELISDVYGEDK 253 (412)
T ss_dssp CCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSC---CHHHHHHHHHHHCGGG
T ss_pred CceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHhc
Confidence 344588888766532111 012238999999999999997543 332212 2456788999999
Q ss_pred ---CCcceeeeecccc------cC---CCHHHHHHHHHHhccCCCchhhhhhhcccCCCChhhHHHHHHHHHH
Q 000202 381 ---GVPLALKVLGCYL------CG---RSKEEWESAMRKLEIVPHMEIQEVLKISYDSLDDSQKRMHDLLRAM 441 (1866)
Q Consensus 381 ---GlPLAl~~~g~~L------~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~~~~l~~~ 441 (1866)
|.|..+..+.... .+ -+.+.+...+..... ...+.-++..||+.++.++..++.+
T Consensus 254 ~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l 320 (412)
T 1w5s_A 254 GGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEA 320 (412)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHH
Confidence 9997554443221 11 133444444433210 2445667889999999888877744
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.4e-10 Score=140.44 Aligned_cols=282 Identities=14% Similarity=0.146 Sum_probs=165.3
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC-----CCHHHHHHHHHHH
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY-----WNTRKIQKQVLRQ 1053 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i~~~ 1053 (1866)
.+.||+++++.+.+ +.. +++.|+|++|+|||||++.+.+.. .. ..+|+++... .+...+...+.+.
T Consensus 14 ~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (357)
T 2fna_A 14 DFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYKDFLLELQKE 84 (357)
T ss_dssp GSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHHHHHHHHHHH
T ss_pred HhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHHHHHHHHHHH
Confidence 46788999999998 765 689999999999999999996532 11 2578877642 3445555555544
Q ss_pred hcc-------------C-------C-----C----CccCHHHHHHHHHHHhCCCcEEEEEeCCCCcc-----chhhhcCC
Q 000202 1054 LSL-------------H-------C-----K----DRETDAQVAEKLWQVLNGEKFLLLLDDVWEQI-----DLEAVGIP 1099 (1866)
Q Consensus 1054 l~~-------------~-------~-----~----~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-----~~~~l~~~ 1099 (1866)
+.. . . . .......+...+.+.-. ++++|||||++... +|..+...
T Consensus 85 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~ 163 (357)
T 2fna_A 85 INKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAY 163 (357)
T ss_dssp HHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHH
T ss_pred HHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHH
Confidence 321 0 0 0 01233444444443322 49999999997522 22222111
Q ss_pred CCCCCCCcEEEEccCChhhhcc----------CC--CCcEEEecCCChHHHHHHHHHHhc--CCCCCchHHHHHHHHHHH
Q 000202 1100 VPGSENGSKIFMASRELDVCRN----------MD--VNMVVKLETLSMKDAWELFCKEVG--GIIQSPDIHLYARAIVKG 1165 (1866)
Q Consensus 1100 l~~~~~gs~IivTTR~~~v~~~----------~~--~~~~~~l~~L~~~~a~~Lf~~~~~--~~~~~~~~~~~~~~I~~~ 1165 (1866)
+.....+.++|+|++....... .. ....+.+.+|+.+++.+++...+. +.... .. ..|++.
T Consensus 164 ~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~----~~i~~~ 238 (357)
T 2fna_A 164 AYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-DY----EVVYEK 238 (357)
T ss_dssp HHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-CH----HHHHHH
T ss_pred HHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-cH----HHHHHH
Confidence 1111236789999997653211 11 125789999999999999987653 21211 22 679999
Q ss_pred cCCChHHHHHHHHHhhCCCCHHHHHHH-hhhCCCCccccccchhhHHHHHH-HhHh--ccCCcchhHHHHhhcCCCCCcc
Q 000202 1166 CCGLPLLTIVTAKALAGERNVSVWKHA-SRKFSLPITIEECCTEDLIELLK-FSFD--QLKDHDVKSCFLHCSLFPEDRE 1241 (1866)
Q Consensus 1166 c~GlPLAi~~~g~~L~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~i~~~l~-~Sy~--~L~~~~lk~cfly~s~Fp~~~~ 1241 (1866)
|+|.|+++..++..+....+...|... .+. ....+...+. +.+. .||+. .+..+..+|. +.
T Consensus 239 t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~---g~- 303 (357)
T 2fna_A 239 IGGIPGWLTYFGFIYLDNKNLDFAINQTLEY----------AKKLILKEFENFLHGREIARKR-YLNIMRTLSK---CG- 303 (357)
T ss_dssp HCSCHHHHHHHHHHHHHHCCHHHHHHHHHHH----------HHHHHHHHHHHHHTTCGGGHHH-HHHHHHHHTT---CB-
T ss_pred hCCCHHHHHHHHHHHccccchHHHHHHHHHH----------HHHHHHHHHHHHhhccccccHH-HHHHHHHHHc---CC-
Confidence 999999999998876532333333211 100 0011111121 2111 57665 7888888887 22
Q ss_pred ccHHHHHHHHH-HcCc-cchhhHhHHHhHHHHHHHHHHhhhhhcccccCccc-chhHHHHH
Q 000202 1242 VSIVEFIDYCI-QEGI-IVGTLANAHKRGHQIVDVLVDASLLLINEVHNSIR-MPGLMKDL 1299 (1866)
Q Consensus 1242 i~~~~Li~~W~-aeG~-i~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~-mhdlv~dl 1299 (1866)
+...+....- ..|. + .......+++.|.+.+++...+ +.|+ .|.++++.
T Consensus 304 -~~~~l~~~~~~~~g~~~------~~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~ 355 (357)
T 2fna_A 304 -KWSDVKRALELEEGIEI------SDSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLA 355 (357)
T ss_dssp -CHHHHHHHHHHHHCSCC------CHHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHH
T ss_pred -CHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHh
Confidence 4444433221 1231 1 1234567899999999987543 4555 46777764
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.4e-11 Score=152.66 Aligned_cols=299 Identities=13% Similarity=0.073 Sum_probs=173.7
Q ss_pred ccchhhHHHHHHHHHh-c----c--CCccEEEE--EcCCCchHHHHHHHHhcCcccc---cccc-eEEEEEecCCCCHHH
Q 000202 979 AVNYTQRNVRKIFRYV-N----D--VTASKIGV--YGVGGIGKTAALKALISYPEVK---VMFH-VIIWVTVSRYWNTRK 1045 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l-~----~--~~~~vi~I--~G~gGvGKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~~~~ 1045 (1866)
.+.||+++++++...+ . . ...+.+.| +|++|+||||||+.+++..... ..|+ .++|+.+....+...
T Consensus 23 ~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (412)
T 1w5s_A 23 ELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYT 102 (412)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHH
T ss_pred CCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHH
Confidence 3667888888887777 3 2 23456666 9999999999999996532221 0122 356777767778899
Q ss_pred HHHHHHHHhccCCCC-ccCHHHHHHHHHHHhC--CCcEEEEEeCCCCc--------cchhhhcCCC---CCCC--CCcEE
Q 000202 1046 IQKQVLRQLSLHCKD-RETDAQVAEKLWQVLN--GEKFLLLLDDVWEQ--------IDLEAVGIPV---PGSE--NGSKI 1109 (1866)
Q Consensus 1046 ~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~--------~~~~~l~~~l---~~~~--~gs~I 1109 (1866)
+...++.+++..... ..+..++...+.+.+. +++++|||||++.. ..+..+...+ +..+ ....|
T Consensus 103 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~l 182 (412)
T 1w5s_A 103 ILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGF 182 (412)
T ss_dssp HHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEE
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEE
Confidence 999999998764322 2234556666776664 78999999999763 2232222222 1112 33457
Q ss_pred EEccCChhhhccC---------CCCcEEEecCCChHHHHHHHHHHh---cCCCCCchHHHHHHHHHHHcC------CChH
Q 000202 1110 FMASRELDVCRNM---------DVNMVVKLETLSMKDAWELFCKEV---GGIIQSPDIHLYARAIVKGCC------GLPL 1171 (1866)
Q Consensus 1110 ivTTR~~~v~~~~---------~~~~~~~l~~L~~~~a~~Lf~~~~---~~~~~~~~~~~~~~~I~~~c~------GlPL 1171 (1866)
|+||+...+.... .....+.+++|+.++++++|...+ +.... --.+....|++.|+ |.|.
T Consensus 183 I~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~G~p~ 260 (412)
T 1w5s_A 183 LLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV--WEPRHLELISDVYGEDKGGDGSAR 260 (412)
T ss_dssp EEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS--CCHHHHHHHHHHHCGGGTSCCCHH
T ss_pred EEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC--CChHHHHHHHHHHHHhccCCCcHH
Confidence 8788755432110 112239999999999999997654 22111 11345677889999 9997
Q ss_pred HHHHHHHHhh------CC--CCHHHHHHHhhhCCCCccccccchhhHHHHHHHhHhccCCcchhHHHHhhcCCC--CCcc
Q 000202 1172 LTIVTAKALA------GE--RNVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCSLFP--EDRE 1241 (1866)
Q Consensus 1172 Ai~~~g~~L~------~~--~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~lk~cfly~s~Fp--~~~~ 1241 (1866)
.+..+..... +. -+.+.+..+...... ...+.-++..||++ .+.++..++.+. .+..
T Consensus 261 ~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 261 RAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSIH-ELIILRLIAEATLGGMEW 327 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCC
Confidence 6655543221 10 122333332221100 12334456788876 688888788653 3345
Q ss_pred ccHHHHHHHHH--H---cCccchhhHhHHHhHHHHHHHHHHhhhhhccc----ccCcccchhHH
Q 000202 1242 VSIVEFIDYCI--Q---EGIIVGTLANAHKRGHQIVDVLVDASLLLINE----VHNSIRMPGLM 1296 (1866)
Q Consensus 1242 i~~~~Li~~W~--a---eG~i~~~~~~~~~~~~~~~~~L~~~sll~~~~----~~~~~~mhdlv 1296 (1866)
+...++...+. + .|.- .-.......+++.|.+.+++.... ..+.+++|.+.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNVK----PRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCCC----CCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred ccHHHHHHHHHHHHHhhcCCC----CCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 66665554442 1 1210 001234567899999999997532 22345555443
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.2e-11 Score=133.26 Aligned_cols=122 Identities=20% Similarity=0.300 Sum_probs=96.2
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCccc-ChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEecccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVI-PPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~-p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~ 1455 (1866)
+.+++++|.+..+|... ...++.|+|++| .+..+ |..+|..+++|++|+|++|.++.+|. .+.++.+|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 47888888888888422 346788999888 45555 45666888999999999999887765 7888999999999999
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcC-ChhhcCCCccceecccc
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~ 1501 (1866)
.+.+..|..++++++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 138 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC
Confidence 87766666788899999999999988877 55677788888877753
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.19 E-value=9e-11 Score=139.25 Aligned_cols=155 Identities=22% Similarity=0.285 Sum_probs=129.9
Q ss_pred CCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcC
Q 000202 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443 (1866)
Q Consensus 1364 ~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~ 1443 (1866)
.+...+.+..+++|+.|++++|.+..++.+..+++|+.|++++| .+..+|. +..+++|++|+|++|.+..++ .++.
T Consensus 57 ~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~n~i~~~~-~l~~ 132 (291)
T 1h6t_A 57 DIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN-KVKDLSS--LKDLKKLKSLSLEHNGISDIN-GLVH 132 (291)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCGGG--GTTCTTCCEEECTTSCCCCCG-GGGG
T ss_pred CcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCC-cCCCChh--hccCCCCCEEECCCCcCCCCh-hhcC
Confidence 34445567788999999999999998888889999999999988 5666654 588999999999999999874 6899
Q ss_pred CCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhh
Q 000202 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDIL 1523 (1866)
Q Consensus 1444 L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l 1523 (1866)
+++|++|+|++|.+.. + ..++++++|++|++++|.++.++. +..+++|++|+++++. + ..+ ..+
T Consensus 133 l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~-i-----~~l-------~~l 196 (291)
T 1h6t_A 133 LPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-I-----SDL-------RAL 196 (291)
T ss_dssp CTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-C-----CBC-------GGG
T ss_pred CCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCc-C-----CCC-------hhh
Confidence 9999999999998654 4 579999999999999999999876 9999999999997642 1 111 136
Q ss_pred hccccCcEeecccCC
Q 000202 1524 SRLQALETLSIDVHP 1538 (1866)
Q Consensus 1524 ~~L~~L~~L~l~~~~ 1538 (1866)
..+++|+.|+++.++
T Consensus 197 ~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 197 AGLKNLDVLELFSQE 211 (291)
T ss_dssp TTCTTCSEEEEEEEE
T ss_pred ccCCCCCEEECcCCc
Confidence 789999999998643
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1e-10 Score=132.53 Aligned_cols=124 Identities=21% Similarity=0.338 Sum_probs=69.7
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~ 1451 (1866)
++++.|++.+|.+..++ .+..+++|+.|+|++| .+..+++..|..+++|++|+|++|.++.+|.. +..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 45566666666665554 2445566666666655 34444444445566666666666666655543 35566666666
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceecc
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTV 1499 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l 1499 (1866)
|++|.+.+..|..+.++++|++|+|++|.++.+|.. +..+++|++|++
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 666665555555566666666666666666555432 455555555544
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.6e-11 Score=132.23 Aligned_cols=136 Identities=15% Similarity=0.097 Sum_probs=116.9
Q ss_pred CCCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCC-CChhh
Q 000202 1363 AGLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKS-LPETL 1441 (1866)
Q Consensus 1363 ~~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~-lp~~i 1441 (1866)
+.+...+.+..+++|+.|++++|.+..++.+..+++|+.|++++|......|.. ++.+++|++|+|++|.+.. .|..+
T Consensus 54 n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~l 132 (197)
T 4ezg_A 54 INVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKI 132 (197)
T ss_dssp SCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEECCSSBCBGGGHHHH
T ss_pred CCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEecCCccCcHhHHHH
Confidence 344444567788999999999999988888889999999999988543334554 4789999999999999984 78889
Q ss_pred cCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceecccc
Q 000202 1442 VNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1442 ~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~ 1501 (1866)
+.+++|++|+|++|..++.+| .+.++++|++|++++|.++.+| .+..+++|++|++.+
T Consensus 133 ~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 133 NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp TTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECB
T ss_pred hhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeC
Confidence 999999999999998677777 7999999999999999999988 789999999998864
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.2e-11 Score=136.82 Aligned_cols=157 Identities=22% Similarity=0.319 Sum_probs=130.4
Q ss_pred ccCCCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh
Q 000202 1361 ARAGLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET 1440 (1866)
Q Consensus 1361 ~~~~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~ 1440 (1866)
....+...+....+++++.|++.+|.+..++.+..+++|+.|+|++| .+..+++ +..+++|++|+|++|.++.+|..
T Consensus 27 ~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~ 103 (263)
T 1xeu_A 27 GKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNRLKNLNGI 103 (263)
T ss_dssp TCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSCCSCCTTC
T ss_pred cCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCCccCCcCcc
Confidence 33445555567788999999999999999998889999999999988 6777777 58899999999999999998864
Q ss_pred hcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCCh
Q 000202 1441 LVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISS 1520 (1866)
Q Consensus 1441 i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 1520 (1866)
.. .+|++|+|++|.+.+ +| .++++++|++|++++|.++.+| .++.+++|++|+++++.- ..+
T Consensus 104 ~~--~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i------~~~------- 165 (263)
T 1xeu_A 104 PS--ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEI------TNT------- 165 (263)
T ss_dssp CC--SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCC------CBC-------
T ss_pred cc--CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcC------cch-------
Confidence 44 999999999998654 54 6999999999999999999997 799999999999976421 111
Q ss_pred hhhhccccCcEeecccCC
Q 000202 1521 DILSRLQALETLSIDVHP 1538 (1866)
Q Consensus 1521 ~~l~~L~~L~~L~l~~~~ 1538 (1866)
..+..+++|+.|+++.++
T Consensus 166 ~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTSTTCCCCCEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCc
Confidence 236789999999998643
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=9e-11 Score=132.93 Aligned_cols=126 Identities=20% Similarity=0.294 Sum_probs=112.5
Q ss_pred ccCcEEEccCCCCCCCCC---CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEE
Q 000202 1375 THAKMIFFMDNDLQTLPG---RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQIL 1450 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~---~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L 1450 (1866)
..++.|++++|.+..++. +..+++|+.|+|++| .+..+++..|..+++|++|+|++|.++.+|. .+..+++|++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 456899999999998742 578999999999988 6788888777999999999999999998875 58999999999
Q ss_pred ecccccCcccCCccccCCCCCcEEEccCCCCCcC-ChhhcCCCccceecccc
Q 000202 1451 ILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1451 ~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~ 1501 (1866)
+|++|.+.+..|..+.++++|++|+|++|.++.+ |..+..+++|++|++.+
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 9999998888899999999999999999999988 67799999999998864
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-10 Score=132.87 Aligned_cols=125 Identities=29% Similarity=0.438 Sum_probs=112.1
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~ 1451 (1866)
++++.|++++|.+..++ .+..+++|+.|+|++| .+..+|...|..+++|++|+|++|.++.+|.. +..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 78999999999999875 3678999999999988 57889988889999999999999999998865 68999999999
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceecccc
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~ 1501 (1866)
|++|.+ ..+|..+.++++|++|++++|.++.+|.. +..+++|++|++.+
T Consensus 119 Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 119 MCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CCSSCC-CSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred ccCCcc-cccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 999985 58999999999999999999999998754 88899999988854
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.18 E-value=8e-11 Score=132.33 Aligned_cols=165 Identities=22% Similarity=0.298 Sum_probs=127.0
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEEeccccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILILRDCD 1456 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~ 1456 (1866)
+.+++.++.+..+|.. ..++|+.|++++| .+..+++..++.+++|++|+|++|.++.+|.. +..+++|++|+|++|.
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4677888888888742 3568999999988 67788888888999999999999999988865 6899999999999999
Q ss_pred CcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecc
Q 000202 1457 FLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSID 1535 (1866)
Q Consensus 1457 ~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~ 1535 (1866)
+....|..++++++|++|++++|.++.+|.. ++++++|++|++.++. +..++ ...+..+++|+.|+++
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~------l~~~~-----~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ------LKSVP-----DGVFDRLTSLQYIWLH 156 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CSCCC-----TTTTTTCTTCCEEECC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc------cceeC-----HHHhccCCCccEEEec
Confidence 7655555679999999999999999988765 7899999999986532 11222 2235678888888887
Q ss_pred cCCCCCccccccccccccccCCCCCCEEEeecCC
Q 000202 1536 VHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPE 1569 (1866)
Q Consensus 1536 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1569 (1866)
.++. ...+++|+.|+++.|.
T Consensus 157 ~N~~--------------~~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 157 DNPW--------------DCTCPGIRYLSEWINK 176 (208)
T ss_dssp SCCB--------------CCCTTTTHHHHHHHHH
T ss_pred CCCe--------------ecCCCCHHHHHHHHHh
Confidence 5431 1345566666665544
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.16 E-value=7.8e-12 Score=155.50 Aligned_cols=83 Identities=23% Similarity=0.140 Sum_probs=41.6
Q ss_pred hcCCCCcEEEccCCCCCC-----CChhhcCCCCCcEEeccccc---CcccCCccc-------cCCCCCcEEEccCCCCCc
Q 000202 1419 ELMTSLKVLNLSKTRIKS-----LPETLVNLKCLQILILRDCD---FLFVLPPEV-------GSLECLEVLDLRGTEIKM 1483 (1866)
Q Consensus 1419 ~~l~~L~~L~Ls~~~i~~-----lp~~i~~L~~L~~L~L~~~~---~~~~lP~~i-------~~L~~L~~L~l~~~~i~~ 1483 (1866)
..+++|++|+|++|.+.. ++..+..+++|++|+|++|. +.+.+|..+ .++++|++|+|++|.+..
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 345555555555555542 22334455555555555542 122333333 455556666666555553
Q ss_pred -----CChhhcCCCccceecccc
Q 000202 1484 -----LPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1484 -----lp~~i~~L~~L~~L~l~~ 1501 (1866)
+|..+.++++|++|++++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~ 131 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHN 131 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHHHhCCCCCEEECcC
Confidence 455555555555555543
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=99.14 E-value=8.8e-11 Score=143.90 Aligned_cols=203 Identities=15% Similarity=0.117 Sum_probs=122.9
Q ss_pred ccccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccc--ccccHH
Q 000202 179 DTFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAE--ETGRLD 256 (1866)
Q Consensus 179 ~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~ 256 (1866)
+.++..+..|+||+.++++|.+++..+ +++.|+|++|+|||||+++++++.. .+|+....... ......
T Consensus 5 ~~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 5 LRPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDCRELYAERGHITRE 75 (350)
T ss_dssp CSCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEHHHHHHTTTCBCHH
T ss_pred CCCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEeecccccccCCCHH
Confidence 344556678999999999999999753 5899999999999999999998751 45554322100 001223
Q ss_pred HHHHHHHHHHhc---------------ccccc-Cccchh--HHHHHHHhhc-CcEEEEEecCCCHH---------HHHHH
Q 000202 257 DLRKELLSKLLN---------------DRNVK-NFQNIS--VNFQSKRLAR-KKVLIVFDDVNHPR---------QIELL 308 (1866)
Q Consensus 257 ~l~~~ll~~~~~---------------~~~~~-~~~~~~--~~~l~~~L~~-k~~LlVlDdv~~~~---------~~~~l 308 (1866)
.+...+...+.. ..... ...... ...+.+..+. ++++|||||++... .+..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 344444333211 00000 001111 1233333332 49999999997532 23333
Q ss_pred hhccCCCCCCCEEEEEccccchhcc-----------Ccc-ceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHH
Q 000202 309 IGRLDRFASGSQVIITTRDKQVLTN-----------CEV-DHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKAL 376 (1866)
Q Consensus 309 ~~~~~~~~~gs~IiiTTR~~~v~~~-----------~~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~ 376 (1866)
...... .++.++|+|++...+... .+. ...+++.+|+.+|+.+++.......... ...+.+.+++
T Consensus 156 ~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~ 232 (350)
T 2qen_A 156 AYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAV 232 (350)
T ss_dssp HHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHH
T ss_pred HHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH
Confidence 222211 247889999887543111 111 3478999999999999998643111111 1235678999
Q ss_pred HHhCCCcceeeeecccc
Q 000202 377 KYAQGVPLALKVLGCYL 393 (1866)
Q Consensus 377 ~~~~GlPLAl~~~g~~L 393 (1866)
+.++|+|+++..++..+
T Consensus 233 ~~tgG~P~~l~~~~~~~ 249 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEY 249 (350)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHH
Confidence 99999999999887654
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=151.05 Aligned_cols=155 Identities=23% Similarity=0.290 Sum_probs=117.5
Q ss_pred CCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcC
Q 000202 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443 (1866)
Q Consensus 1364 ~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~ 1443 (1866)
.+...+.+..+++|+.|++++|.+..++.+..+++|+.|+|++| .+..+| . +..+++|++|+|++|.+..+| .+..
T Consensus 54 ~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~l~-~-l~~l~~L~~L~Ls~N~l~~l~-~l~~ 129 (605)
T 1m9s_A 54 DIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDEN-KIKDLS-S-LKDLKKLKSLSLEHNGISDIN-GLVH 129 (605)
T ss_dssp CCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSS-CCCCCT-T-STTCTTCCEEECTTSCCCCCG-GGGG
T ss_pred CCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCC-CCCCCh-h-hccCCCCCEEEecCCCCCCCc-cccC
Confidence 34444557778888888888888888877788888888888877 555655 2 477888888888888888764 5888
Q ss_pred CCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhh
Q 000202 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDIL 1523 (1866)
Q Consensus 1444 L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l 1523 (1866)
|++|+.|+|++|.+.. + ..++.|++|+.|+|++|.+..++. +..+++|++|+++++. +. .+ ..+
T Consensus 130 l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~-----~l-------~~l 193 (605)
T 1m9s_A 130 LPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-IS-----DL-------RAL 193 (605)
T ss_dssp CTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CC-----BC-------GGG
T ss_pred CCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC-CC-----CC-------hHH
Confidence 8888888888888554 3 578888888888888888887766 8888888888886642 11 11 136
Q ss_pred hccccCcEeecccCC
Q 000202 1524 SRLQALETLSIDVHP 1538 (1866)
Q Consensus 1524 ~~L~~L~~L~l~~~~ 1538 (1866)
..|++|+.|+++.+.
T Consensus 194 ~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 194 AGLKNLDVLELFSQE 208 (605)
T ss_dssp TTCTTCSEEECCSEE
T ss_pred ccCCCCCEEEccCCc
Confidence 678888888887543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.5e-10 Score=145.33 Aligned_cols=166 Identities=20% Similarity=0.245 Sum_probs=127.6
Q ss_pred ccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEeccc
Q 000202 1375 THAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRD 1454 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 1454 (1866)
++|+.|++++|.+..+| ..+++|+.|+|++| .+..+|. + .. +|++|+|++|.++.+|. .+++|++|+|++
T Consensus 80 ~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N-~l~~ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 80 PQITVLEITQNALISLP--ELPASLEYLDACDN-RLSTLPE-L-PA--SLKHLDVDNNQLTMLPE---LPALLEYINADN 149 (571)
T ss_dssp TTCSEEECCSSCCSCCC--CCCTTCCEEECCSS-CCSCCCC-C-CT--TCCEEECCSSCCSCCCC---CCTTCCEEECCS
T ss_pred CCCCEEECcCCCCcccc--cccCCCCEEEccCC-CCCCcch-h-hc--CCCEEECCCCcCCCCCC---cCccccEEeCCC
Confidence 67999999999999998 66899999999988 5666887 4 33 89999999999999988 689999999999
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeec
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l 1534 (1866)
|.+. .+|. .+++|++|++++|.++.+|. +. ++|++|+++++. +..+|. +........+.|+.|++
T Consensus 150 N~l~-~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~------L~~lp~--~~~~L~~~~~~L~~L~L 214 (571)
T 3cvr_A 150 NQLT-MLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL------LESLPA--VPVRNHHSEETEIFFRC 214 (571)
T ss_dssp SCCS-CCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC------CSSCCC--CC--------CCEEEEC
T ss_pred CccC-cCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC------CCchhh--HHHhhhcccccceEEec
Confidence 9865 4776 57899999999999999998 66 899999987642 223333 21111223344599999
Q ss_pred ccCCCCCccccccccccccccCCCCCCEEEeecCCccch
Q 000202 1535 DVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECV 1573 (1866)
Q Consensus 1535 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 1573 (1866)
+.|. ...++..+..+++|+.|+++.|.+...
T Consensus 215 s~N~--------l~~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 215 RENR--------ITHIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp CSSC--------CCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred CCCc--------ceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 8543 334677788899999999999998653
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.13 E-value=6.4e-11 Score=129.14 Aligned_cols=129 Identities=19% Similarity=0.183 Sum_probs=103.1
Q ss_pred CccccccCcEEEccCCCCCCCCCCCCCC-cccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhh-cCCCCC
Q 000202 1370 SEEEWTHAKMIFFMDNDLQTLPGRPSCP-NLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETL-VNLKCL 1447 (1866)
Q Consensus 1370 ~~~~~~~l~~l~l~~~~l~~l~~~~~~~-~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i-~~L~~L 1447 (1866)
......+++.|++.+|.+..+|.+..+. +|+.|++++| .+..+ + .++.+++|++|+|++|.++.+|+.+ +.+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~-~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEE-C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCCcc-c-ccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3455678889999999988888766655 8999999887 45555 2 3477888999999999988888655 888999
Q ss_pred cEEecccccCcccCCc--cccCCCCCcEEEccCCCCCcCChh----hcCCCccceeccccc
Q 000202 1448 QILILRDCDFLFVLPP--EVGSLECLEVLDLRGTEIKMLPKE----IGKLTSLRYLTVFFF 1502 (1866)
Q Consensus 1448 ~~L~L~~~~~~~~lP~--~i~~L~~L~~L~l~~~~i~~lp~~----i~~L~~L~~L~l~~~ 1502 (1866)
++|+|++|.+ +.+|. .++++++|++|++++|.+..+|.. ++.+++|++|++..+
T Consensus 91 ~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 91 TELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 9999998885 66776 788888999999999988888875 888888888887653
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=142.60 Aligned_cols=178 Identities=21% Similarity=0.254 Sum_probs=111.4
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHh-cCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEecccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFE-LMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~-~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~ 1455 (1866)
+.+++.++.+..+|.. -.+.++.|+|++| .+..++...+. .+++|++|+|++|.|..+| ..+.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 4677777777777742 1245777888776 56666666655 6778888888888777666 45777788888888887
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcC-ChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeec
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l 1534 (1866)
.+....|..+.++.+|++|+|++|.|+.+ |..+..+++|++|+++++. +..++...+. .+..+++|+.|++
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~------l~~l~~~~~~--~~~~l~~L~~L~L 170 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ------ISRFPVELIK--DGNKLPKLMLLDL 170 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC------CCSCCGGGTC------CTTCCEEEC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc------CCeeCHHHhc--CcccCCcCCEEEC
Confidence 76555555677778888888888877766 4557777778877775431 1122211100 0145777777777
Q ss_pred ccCCCCCccccccccccccccCCCC--CCEEEeecCCccc
Q 000202 1535 DVHPGDKRWDKDVKIVITEVSGLTK--LSSLSFHFPEIEC 1572 (1866)
Q Consensus 1535 ~~~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~l~~ 1572 (1866)
+.+.... .....+..++. |+.|+++.|.+.+
T Consensus 171 ~~N~l~~-------l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 171 SSNKLKK-------LPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CSSCCCC-------CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCCCCc-------cCHHHhhhccHhhcceEEecCCCccC
Confidence 7433221 11233445554 4678888877654
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=125.69 Aligned_cols=125 Identities=26% Similarity=0.247 Sum_probs=99.3
Q ss_pred ccCcEEEccCCCCC--CCCCC-CCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCC-CChhhcCCCCCcEE
Q 000202 1375 THAKMIFFMDNDLQ--TLPGR-PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKS-LPETLVNLKCLQIL 1450 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~--~l~~~-~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~-lp~~i~~L~~L~~L 1450 (1866)
++++.|++.+|.+. .+|.. ..+++|+.|++++|. +..+ ..+..+++|++|+|++|.+.. +|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 67888999998887 77754 678889999998874 5555 334778889999999998886 77777778899999
Q ss_pred ecccccCcccCC--ccccCCCCCcEEEccCCCCCcCCh----hhcCCCccceecccccc
Q 000202 1451 ILRDCDFLFVLP--PEVGSLECLEVLDLRGTEIKMLPK----EIGKLTSLRYLTVFFFG 1503 (1866)
Q Consensus 1451 ~L~~~~~~~~lP--~~i~~L~~L~~L~l~~~~i~~lp~----~i~~L~~L~~L~l~~~~ 1503 (1866)
+|++|.+ ..+| ..++.+++|++|++++|.++.+|. .+..+++|++|++..+.
T Consensus 101 ~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 101 NLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ECBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred eccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 9988875 4444 678888889999999988888876 68888888888886643
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-10 Score=123.47 Aligned_cols=124 Identities=23% Similarity=0.204 Sum_probs=94.8
Q ss_pred cccCcEEEccCCCCC--CCCC-CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCC-CChhhcCCCCCcE
Q 000202 1374 WTHAKMIFFMDNDLQ--TLPG-RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKS-LPETLVNLKCLQI 1449 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~--~l~~-~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~-lp~~i~~L~~L~~ 1449 (1866)
.++++.|++++|.+. .+|. +..+++|+.|++++| .+..+ ..++.+++|++|+|++|.+.. +|..++.+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 367888888888887 6774 367888888888877 45555 334778888888888888886 7777777888888
Q ss_pred EecccccCccc-CCccccCCCCCcEEEccCCCCCcCCh----hhcCCCccceeccc
Q 000202 1450 LILRDCDFLFV-LPPEVGSLECLEVLDLRGTEIKMLPK----EIGKLTSLRYLTVF 1500 (1866)
Q Consensus 1450 L~L~~~~~~~~-lP~~i~~L~~L~~L~l~~~~i~~lp~----~i~~L~~L~~L~l~ 1500 (1866)
|++++|.+.+. .|..++.+++|++|++++|.++.+|. .++.+++|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888885442 23678888888888888888887765 57788888888764
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.11 E-value=5.7e-11 Score=144.66 Aligned_cols=180 Identities=17% Similarity=0.107 Sum_probs=136.7
Q ss_pred ccCcEEEccCCCCCCCC-CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCC-CCChhhcCCCCCcEEec
Q 000202 1375 THAKMIFFMDNDLQTLP-GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIK-SLPETLVNLKCLQILIL 1452 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~-~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~L 1452 (1866)
++++.+++.+|.+...+ ....+++|+.|++++|.....-.+.++..+++|++|+|++|.+. ..|..++.+++|++|+|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 57888999998887543 56688999999999885322313344588999999999999988 67888999999999999
Q ss_pred ccccCcc--cCCccccCCCCCcEEEccCC-CCCc--CChhhcCCC-ccceecccccc-ccCCCccccCCCCCCChhhhhc
Q 000202 1453 RDCDFLF--VLPPEVGSLECLEVLDLRGT-EIKM--LPKEIGKLT-SLRYLTVFFFG-SMYKSEYIKLPPDLISSDILSR 1525 (1866)
Q Consensus 1453 ~~~~~~~--~lP~~i~~L~~L~~L~l~~~-~i~~--lp~~i~~L~-~L~~L~l~~~~-~~~~~~~~~l~~~~~~~~~l~~ 1525 (1866)
++|..+. .+|..+.++++|++|++++| .++. +|..+++++ +|++|+++++. ..+.. .+ ...+..
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~---~l------~~~~~~ 220 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS---DL------STLVRR 220 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH---HH------HHHHHH
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH---HH------HHHHhh
Confidence 9994343 36777889999999999999 8884 688889999 99999998764 22111 11 123667
Q ss_pred cccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCC
Q 000202 1526 LQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPE 1569 (1866)
Q Consensus 1526 L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1569 (1866)
+++|+.|+++.+.... ...+..+..+++|+.|+++.|.
T Consensus 221 ~~~L~~L~l~~~~~l~------~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLK------NDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCSEEECTTCTTCC------GGGGGGGGGCTTCCEEECTTCT
T ss_pred CCCCCEEeCCCCCcCC------HHHHHHHhCCCCCCEeeCCCCC
Confidence 8999999998654211 1245567888999999998885
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.3e-10 Score=139.02 Aligned_cols=152 Identities=26% Similarity=0.371 Sum_probs=125.2
Q ss_pred ccCcEEEccCCCCCCCCC--CC-CCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEE
Q 000202 1375 THAKMIFFMDNDLQTLPG--RP-SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQIL 1450 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~--~~-~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L 1450 (1866)
..++.|++++|.+..++. +. .+++|+.|+|++| .+..+++..|..+++|++|+|++|.++.+|. .+..+.+|++|
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 458899999999998774 44 8999999999988 6888888777999999999999999998875 68999999999
Q ss_pred ecccccCcccCCccccCCCCCcEEEccCCCCCcCChhh----cCCCccceeccccccccCCCccccCCCCCCChhhhhcc
Q 000202 1451 ILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEI----GKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRL 1526 (1866)
Q Consensus 1451 ~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i----~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L 1526 (1866)
+|++|.+....|..+.++++|++|+|++|.++.+|..+ ..+++|++|++++.. +.. ++...+..+
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~------l~~-----l~~~~~~~l 186 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK------LKK-----LPLTDLQKL 186 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC------CCC-----CCHHHHHHS
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC------CCc-----cCHHHhhhc
Confidence 99999988888889999999999999999999999875 679999999986531 111 233456667
Q ss_pred cc--CcEeecccCC
Q 000202 1527 QA--LETLSIDVHP 1538 (1866)
Q Consensus 1527 ~~--L~~L~l~~~~ 1538 (1866)
+. |+.|+++.++
T Consensus 187 ~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 187 PAWVKNGLYLHNNP 200 (361)
T ss_dssp CHHHHTTEECCSSC
T ss_pred cHhhcceEEecCCC
Confidence 65 4778887654
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-10 Score=143.30 Aligned_cols=200 Identities=15% Similarity=0.153 Sum_probs=117.9
Q ss_pred cccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccc--ccccHHH
Q 000202 180 TFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAE--ETGRLDD 257 (1866)
Q Consensus 180 ~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~~ 257 (1866)
.++..+..|+||+.+++.|.+ +.. +++.|+|++|+|||||+++++++.... .+|+... ... .......
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~ 76 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLR-KFEERNYISYKD 76 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGG-GGTTCSCCCHHH
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEch-hhccccCCCHHH
Confidence 344456789999999999999 764 589999999999999999999876432 4555432 210 0011122
Q ss_pred HHHHHHHHHh-------------ccc---ccc----Cc-----cchhHHHHHHHhhc---CcEEEEEecCCCHH-----H
Q 000202 258 LRKELLSKLL-------------NDR---NVK----NF-----QNISVNFQSKRLAR---KKVLIVFDDVNHPR-----Q 304 (1866)
Q Consensus 258 l~~~ll~~~~-------------~~~---~~~----~~-----~~~~~~~l~~~L~~---k~~LlVlDdv~~~~-----~ 304 (1866)
+...+...+. ... ... .. .......+.+.+.. ++++|||||++... +
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh
Confidence 2222222111 000 000 00 01112223333332 49999999996522 2
Q ss_pred HHHHhhccCCCCCCCEEEEEccccchhcc----------C-cc-ceeeecCCCCHHHHHHHHHhhcCC-CCCCChhHHHH
Q 000202 305 IELLIGRLDRFASGSQVIITTRDKQVLTN----------C-EV-DHIYQMKELVHADAHKLFTQCAFR-GDHLDAGYTEL 371 (1866)
Q Consensus 305 ~~~l~~~~~~~~~gs~IiiTTR~~~v~~~----------~-~~-~~~~~l~~L~~~ea~~Lf~~~a~~-~~~~~~~~~~~ 371 (1866)
+..++..+....++.++|+|+|....... . +. ...+++.+|+.+|+.+++...... +..+..
T Consensus 157 ~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----- 231 (357)
T 2fna_A 157 LLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----- 231 (357)
T ss_dssp CHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC-----
T ss_pred HHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc-----
Confidence 22222211111246789999997643210 1 11 357899999999999999864311 112221
Q ss_pred HHHHHHHhCCCcceeeeeccccc
Q 000202 372 AHKALKYAQGVPLALKVLGCYLC 394 (1866)
Q Consensus 372 ~~~i~~~~~GlPLAl~~~g~~L~ 394 (1866)
..+|++.++|+|+++..++..+.
T Consensus 232 ~~~i~~~t~G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 232 YEVVYEKIGGIPGWLTYFGFIYL 254 (357)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHc
Confidence 17899999999999999887653
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.8e-10 Score=136.60 Aligned_cols=195 Identities=16% Similarity=0.100 Sum_probs=136.3
Q ss_pred cccCcEEEccCCCCCC-CCC-C--CCCCcccEEEccCCcCCcccC---hhHHhcCCCCcEEEccCCCCCCCC-hhhcCCC
Q 000202 1374 WTHAKMIFFMDNDLQT-LPG-R--PSCPNLLTLFLQRNCRLRVIP---PSFFELMTSLKVLNLSKTRIKSLP-ETLVNLK 1445 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~~-l~~-~--~~~~~L~~L~L~~~~~l~~~p---~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~ 1445 (1866)
+++++.|++++|.+.. .|. + ..+++|++|+|++|......+ ...+..+++|++|+|++|.+..+| ..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4568999999999874 343 3 678999999999885443333 222356899999999999998766 6788999
Q ss_pred CCcEEecccccCccc--C--CccccCCCCCcEEEccCCCCCcCChh----hcCCCccceeccccccccCCCccccC-CCC
Q 000202 1446 CLQILILRDCDFLFV--L--PPEVGSLECLEVLDLRGTEIKMLPKE----IGKLTSLRYLTVFFFGSMYKSEYIKL-PPD 1516 (1866)
Q Consensus 1446 ~L~~L~L~~~~~~~~--l--P~~i~~L~~L~~L~l~~~~i~~lp~~----i~~L~~L~~L~l~~~~~~~~~~~~~l-~~~ 1516 (1866)
+|++|+|++|.+.+. + +..++++++|++|++++|.++.+|.. ++.+++|++|+++++.- ... |..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l------~~~~p~~ 243 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSL------RATVNPS 243 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCC------CCCCCSC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCC------Cccchhh
Confidence 999999999986542 2 23347889999999999999877653 57889999999876431 111 111
Q ss_pred CCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEE
Q 000202 1517 LISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKF 1592 (1866)
Q Consensus 1517 ~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l 1592 (1866)
. ..+..+++|+.|+++.+... .++..+. ++|+.|+++.|.+..++. ....++|+.|.+
T Consensus 244 ~---~~~~~~~~L~~L~Ls~N~l~--------~lp~~~~--~~L~~L~Ls~N~l~~~~~-----~~~l~~L~~L~L 301 (310)
T 4glp_A 244 A---PRCMWSSALNSLNLSFAGLE--------QVPKGLP--AKLRVLDLSSNRLNRAPQ-----PDELPEVDNLTL 301 (310)
T ss_dssp C---SSCCCCTTCCCEECCSSCCC--------SCCSCCC--SCCSCEECCSCCCCSCCC-----TTSCCCCSCEEC
T ss_pred H---HhccCcCcCCEEECCCCCCC--------chhhhhc--CCCCEEECCCCcCCCCch-----hhhCCCccEEEC
Confidence 0 01223468999999854432 3444443 789999999999886532 123456666665
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-10 Score=144.81 Aligned_cols=194 Identities=15% Similarity=0.080 Sum_probs=137.2
Q ss_pred ccccccCcEEEccCCCCCCC-----C-CCCCCCcccEEEccCCc--CC-cccChhH------HhcCCCCcEEEccCCCCC
Q 000202 1371 EEEWTHAKMIFFMDNDLQTL-----P-GRPSCPNLLTLFLQRNC--RL-RVIPPSF------FELMTSLKVLNLSKTRIK 1435 (1866)
Q Consensus 1371 ~~~~~~l~~l~l~~~~l~~l-----~-~~~~~~~L~~L~L~~~~--~l-~~~p~~~------~~~l~~L~~L~Ls~~~i~ 1435 (1866)
+..+++++.|++++|.+... + .+..+++|+.|+|++|. .+ ..+|..+ +..+++|++|+|++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 34567899999999988742 2 35678999999999862 12 2344443 367899999999999988
Q ss_pred C-----CChhhcCCCCCcEEecccccCcccC----CccccCC---------CCCcEEEccCCCCC--cCC---hhhcCCC
Q 000202 1436 S-----LPETLVNLKCLQILILRDCDFLFVL----PPEVGSL---------ECLEVLDLRGTEIK--MLP---KEIGKLT 1492 (1866)
Q Consensus 1436 ~-----lp~~i~~L~~L~~L~L~~~~~~~~l----P~~i~~L---------~~L~~L~l~~~~i~--~lp---~~i~~L~ 1492 (1866)
. +|..+..+++|++|+|++|.+.... +..+..+ ++|++|++++|.+. .+| ..+.+++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 6 7888999999999999999875333 3334444 89999999999987 455 4678899
Q ss_pred ccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1493 SLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1493 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
+|++|++.++.- .......+ ....+..+++|+.|+++.+.... .....++..+..+++|+.|+++.|.+..
T Consensus 188 ~L~~L~L~~n~l-~~~g~~~l-----~~~~l~~~~~L~~L~Ls~n~l~~---~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 188 LLHTVKMVQNGI-RPEGIEHL-----LLEGLAYCQELKVLDLQDNTFTH---LGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp TCCEEECCSSCC-CHHHHHHH-----HHTTGGGCTTCCEEECCSSCCHH---HHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred CcCEEECcCCCC-CHhHHHHH-----HHHHhhcCCCccEEECcCCCCCc---HHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 999999876521 10000000 00136788999999998654210 0113356677888999999999998775
Q ss_pred h
Q 000202 1573 V 1573 (1866)
Q Consensus 1573 ~ 1573 (1866)
.
T Consensus 259 ~ 259 (386)
T 2ca6_A 259 R 259 (386)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.4e-09 Score=132.96 Aligned_cols=236 Identities=17% Similarity=0.114 Sum_probs=144.1
Q ss_pred CCceeehhhHHHHHHhhhc--CCCCcEEEEEEecCCCchhHHHHHHHHhhhccc-------cc-eEEEEeeccccccc-c
Q 000202 186 KDLIGVEWRIKEIESLLRT--GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF-------EG-SYFACNVRAAEETG-R 254 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~--~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-------~~-~~~~~~~~~~~~~~-~ 254 (1866)
..|+||+.+++++..++.. .....+.+.|+|++|+||||||+++++.....+ .. .+|+. ... .. .
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~~~---~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-CRE---VGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-HHH---HCSC
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-Ccc---CCCC
Confidence 6899999999999988864 233456899999999999999999999764432 22 23332 211 12 3
Q ss_pred HHHHHHHHHHHHhccccccCcc--chhHHHHHHHhhcCcEEEEEecCCCHH------H-HHHHhhccCCCCCCCEEEEEc
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQ--NISVNFQSKRLARKKVLIVFDDVNHPR------Q-IELLIGRLDRFASGSQVIITT 325 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~--~~~~~~l~~~L~~k~~LlVlDdv~~~~------~-~~~l~~~~~~~~~gs~IiiTT 325 (1866)
...+..+++..+.+........ ......+.+.++.++.+|||||++... . +..+... . .+..||+||
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~---~-~~~~iI~~t 171 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS---D-ANISVIMIS 171 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS---S-SCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC---C-cceEEEEEE
Confidence 4556666666664332211111 111245556676666699999997532 2 3333332 2 678899999
Q ss_pred cccchhccC------ccceeeecCCCCHHHHHHHHHhhc---CCCCCCChhHHHHHHHHHHHhC---CCcc-eeeeeccc
Q 000202 326 RDKQVLTNC------EVDHIYQMKELVHADAHKLFTQCA---FRGDHLDAGYTELAHKALKYAQ---GVPL-ALKVLGCY 392 (1866)
Q Consensus 326 R~~~v~~~~------~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~---GlPL-Al~~~g~~ 392 (1866)
+........ .....+++++++.++..++|...+ +...... .+....+++.++ |.|. |+.++-..
T Consensus 172 ~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a 248 (384)
T 2qby_B 172 NDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRA 248 (384)
T ss_dssp SSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 876322111 112389999999999999998874 3322222 244667777777 8876 33332221
Q ss_pred c--c----CCCHHHHHHHHHHhccCCCchhhhhhhcccCCCChhhHHHHHHHH
Q 000202 393 L--C----GRSKEEWESAMRKLEIVPHMEIQEVLKISYDSLDDSQKRMHDLLR 439 (1866)
Q Consensus 393 L--~----~~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~~~~l~ 439 (1866)
. . .-+.+.+..++..... ..+..+++.|++.++..+..+.
T Consensus 249 ~~~a~~~~~i~~~~v~~~~~~~~~-------~~~~~~~~~l~~~~~~~l~al~ 294 (384)
T 2qby_B 249 AQLASGGGIIRKEHVDKAIVDYEQ-------ERLIEAVKALPFHYKLALRSLI 294 (384)
T ss_dssp HHHTTSSSCCCHHHHHHHHHHHHH-------HHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHhcCCCccCHHHHHHHHHHHhc-------chHHHHHHcCCHHHHHHHHHHH
Confidence 1 1 2356777777665532 3355566777777766555444
|
| >3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.6e-10 Score=112.50 Aligned_cols=64 Identities=13% Similarity=0.203 Sum_probs=56.1
Q ss_pred cchhcchhhHHHHHHHHHHHHHHHHHHHhcc-ccccchHHHHHHHHHhhhhhhhhHHHHHhhhhh
Q 000202 566 ARAYWNHTDLKQLRLKLAEVRYLLQDAVRCG-ADQNLNIDTWFKDLRGLTYEVDELIDNWEQSEI 629 (1866)
Q Consensus 566 ~~~l~~~~~l~~l~~~L~~i~a~L~dAe~~~-~~~~~~v~~Wl~qLrd~ayd~eD~lD~~~~~~~ 629 (1866)
....+...++++|+++|++|++||.||++++ +..+..++.|++|||++|||+|||||+|.+...
T Consensus 19 ~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 19 KLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456668899999999999999999998763 447889999999999999999999999988764
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-09 Score=121.25 Aligned_cols=121 Identities=24% Similarity=0.437 Sum_probs=98.1
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEeccccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDCD 1456 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~ 1456 (1866)
+.+++++|.+..+|... .++|+.|++++| .+..+|.. +..+++|++|+|++|.|+.++ ..+.++++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n-~i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGN-QFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSS-CCCSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCC-cCchhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 56888888888888532 368899999887 56778854 478899999999999998776 468889999999999998
Q ss_pred CcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceecccc
Q 000202 1457 FLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1457 ~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~ 1501 (1866)
+....|..++++++|++|+|++|.++.+|.. +..+++|++|++.+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence 7776677888999999999999999888764 77788888887753
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.04 E-value=6.5e-10 Score=122.93 Aligned_cols=122 Identities=20% Similarity=0.268 Sum_probs=102.4
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChh-HHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEecccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPS-FFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~-~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~ 1455 (1866)
+.+++++|.+..+|... ..+|+.|++++| .+..+++. +++.+++|++|+|++|.++.+ |..++.+.+|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 67889999999888532 238999999988 56666653 568899999999999999877 678999999999999999
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcC-ChhhcCCCccceecccc
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~ 1501 (1866)
.+.+..|..++++++|++|++++|.++.+ |..++.+++|++|++.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 98877777799999999999999999866 66788899999988754
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-09 Score=139.20 Aligned_cols=171 Identities=24% Similarity=0.299 Sum_probs=130.7
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~ 1455 (1866)
+++.|++++|.+..+|... +++|+.|+|++| .+..+| +.+++|++|+|++|.++.+|. +++ +|++|+|++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N-~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQN-ALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCC-CCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 7899999999999988633 489999999988 577888 347999999999999999998 766 9999999999
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecc
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSID 1535 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~ 1535 (1866)
.+.+ +|. .+++|++|++++|.++.+|. .+++|++|+++++. +..+|. +. ++|+.|+++
T Consensus 131 ~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~------L~~lp~-------l~--~~L~~L~Ls 188 (571)
T 3cvr_A 131 QLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ------LTFLPE-------LP--ESLEALDVS 188 (571)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC------CSCCCC-------CC--TTCCEEECC
T ss_pred cCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC------CCCcch-------hh--CCCCEEECc
Confidence 8655 887 68999999999999999997 67899999997642 222333 22 789999998
Q ss_pred cCCCCCccccccccccccccCCCCC-------CEEEeecCCccchHHhhccCccccCCcceeEE
Q 000202 1536 VHPGDKRWDKDVKIVITEVSGLTKL-------SSLSFHFPEIECVAEFLKGSAWNNQQLTEFKF 1592 (1866)
Q Consensus 1536 ~~~~~~~~~~~~~~~~~~l~~l~~L-------~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l 1592 (1866)
.|... .++. +.. +| +.|+++.|.+..++..+.. .++|+.|.+
T Consensus 189 ~N~L~--------~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~----l~~L~~L~L 237 (571)
T 3cvr_A 189 TNLLE--------SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILS----LDPTCTIIL 237 (571)
T ss_dssp SSCCS--------SCCC-CC----------CCEEEECCSSCCCCCCGGGGG----SCTTEEEEC
T ss_pred CCCCC--------chhh-HHH--hhhcccccceEEecCCCcceecCHHHhc----CCCCCEEEe
Confidence 65422 2333 333 56 9999999998877654332 345555554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.6e-10 Score=145.22 Aligned_cols=120 Identities=23% Similarity=0.278 Sum_probs=92.7
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~ 1455 (1866)
.++.|++++|.+..+|.+..+++|+.|+|++| .+..+|..+ +.+++|++|+|++|.++.+| .+++|++|++|+|++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N-~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHN-RLRALPPAL-AALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSS-CCCCCCGGG-GGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcc-cccccchhh-hcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 46788888888888888778888888888877 566777755 67888888888888888887 7888888888888888
Q ss_pred cCcccC-CccccCCCCCcEEEccCCCCCcCChhh----cCCCccceec
Q 000202 1456 DFLFVL-PPEVGSLECLEVLDLRGTEIKMLPKEI----GKLTSLRYLT 1498 (1866)
Q Consensus 1456 ~~~~~l-P~~i~~L~~L~~L~l~~~~i~~lp~~i----~~L~~L~~L~ 1498 (1866)
.+.+.. |..+++|++|++|+|++|.++.+|+.+ ..+++|+.|+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 866554 788888888888888888887776543 2356666664
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.9e-10 Score=135.35 Aligned_cols=176 Identities=15% Similarity=0.112 Sum_probs=133.2
Q ss_pred cccccCcEEEccCCCCCCC-C-----CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCC---CCh--h
Q 000202 1372 EEWTHAKMIFFMDNDLQTL-P-----GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKS---LPE--T 1440 (1866)
Q Consensus 1372 ~~~~~l~~l~l~~~~l~~l-~-----~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~---lp~--~ 1440 (1866)
..+++|+.|++++|.+... + .+..+++|+.|+|++| .+..+++..++.+++|++|+|++|.+.. +|. .
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 192 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC 192 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHh
Confidence 6688999999999998852 2 1246889999999988 5677777667889999999999998763 433 3
Q ss_pred hcCCCCCcEEecccccCcccCCc----cccCCCCCcEEEccCCCCCcC-ChhhcCC---CccceeccccccccCCCcccc
Q 000202 1441 LVNLKCLQILILRDCDFLFVLPP----EVGSLECLEVLDLRGTEIKML-PKEIGKL---TSLRYLTVFFFGSMYKSEYIK 1512 (1866)
Q Consensus 1441 i~~L~~L~~L~L~~~~~~~~lP~----~i~~L~~L~~L~l~~~~i~~l-p~~i~~L---~~L~~L~l~~~~~~~~~~~~~ 1512 (1866)
++.+++|++|+|++|.+ ..+|. .++++++|++|++++|.++.+ |..++.+ ++|++|+++++. +..
T Consensus 193 ~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~------l~~ 265 (310)
T 4glp_A 193 PHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG------LEQ 265 (310)
T ss_dssp TTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC------CCS
T ss_pred hhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC------CCc
Confidence 46899999999999985 44444 257889999999999999976 8777777 699999987642 223
Q ss_pred CCCCCCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1513 LPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1513 l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
+|.. + .++|+.|+++.+.... + ..+..+++|+.|+++.|.+..
T Consensus 266 lp~~------~--~~~L~~L~Ls~N~l~~--------~-~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 266 VPKG------L--PAKLRVLDLSSNRLNR--------A-PQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSC------C--CSCCSCEECCSCCCCS--------C-CCTTSCCCCSCEECSSTTTSC
T ss_pred hhhh------h--cCCCCEEECCCCcCCC--------C-chhhhCCCccEEECcCCCCCC
Confidence 3432 1 2689999998765432 2 235778999999999998753
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-09 Score=136.16 Aligned_cols=241 Identities=17% Similarity=0.127 Sum_probs=139.2
Q ss_pred CCCceeehhhHHHHHHhhhcC--CCCcEEEEEEecCCCchhHHHHHHHHhhhcccc---ceEEEEeeccccccccHHHHH
Q 000202 185 SKDLIGVEWRIKEIESLLRTG--SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFE---GSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~~--~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
+..|+||+.+++.+.+++... ....+.+.|+|++|+||||||+++++.....+. ..+|+.. .. ......+.
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~-~~---~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT-RQ---IDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH-HH---HCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC-CC---CCCHHHHH
Confidence 468999999999999998742 334568999999999999999999997766542 2333331 11 12233444
Q ss_pred HHHHHHHhccccccCccchh-HHHHHHHhh--cCcEEEEEecCCC------HHHHHHHhhccCC-CCCCCEEEEEccccc
Q 000202 260 KELLSKLLNDRNVKNFQNIS-VNFQSKRLA--RKKVLIVFDDVNH------PRQIELLIGRLDR-FASGSQVIITTRDKQ 329 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~-~~~l~~~L~--~k~~LlVlDdv~~------~~~~~~l~~~~~~-~~~gs~IiiTTR~~~ 329 (1866)
..++..+............. ...+.+.+. +++.+||||+++. .+.+..+...... ...+..+|+||++..
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 55544442211100100111 133444443 3589999999964 2334444433321 133566788888664
Q ss_pred hhccCcc-------ceeeecCCCCHHHHHHHHHhhc---CCCCCCChhHHHHHHHHHHHhC---CCcceeee-ecccc--
Q 000202 330 VLTNCEV-------DHIYQMKELVHADAHKLFTQCA---FRGDHLDAGYTELAHKALKYAQ---GVPLALKV-LGCYL-- 393 (1866)
Q Consensus 330 v~~~~~~-------~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~---GlPLAl~~-~g~~L-- 393 (1866)
....... ...+++++++.++..+++...+ +...... .+....+++.++ |.|..+.. +....
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4322211 1478999999999999998754 2222222 445666777777 99884332 22211
Q ss_pred ---cC---CCHHHHHHHHHHhccCCCchhhhhhhcccCCCChhhHHHHHHHH
Q 000202 394 ---CG---RSKEEWESAMRKLEIVPHMEIQEVLKISYDSLDDSQKRMHDLLR 439 (1866)
Q Consensus 394 ---~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~~~~l~ 439 (1866)
.+ -+.+..+.++.... ...+.-++..|+..++..+..++
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~ 296 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVV 296 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHH
Confidence 01 24455555555432 23455566778877776555544
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.00 E-value=6.9e-10 Score=119.93 Aligned_cols=117 Identities=25% Similarity=0.304 Sum_probs=100.9
Q ss_pred CccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC--hhhcCCCCC
Q 000202 1370 SEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP--ETLVNLKCL 1447 (1866)
Q Consensus 1370 ~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp--~~i~~L~~L 1447 (1866)
.+..+++|+.|++++|.+..++.+..+++|+.|++++|. +...++..+..+++|++|+|++|.++.+| ..++.+++|
T Consensus 44 ~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L 122 (168)
T 2ell_A 44 LTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECL 122 (168)
T ss_dssp CCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCC
T ss_pred HHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCC
Confidence 357789999999999999988778899999999999885 55534455578999999999999999987 789999999
Q ss_pred cEEecccccCcccCC---ccccCCCCCcEEEccCCCCCcCChh
Q 000202 1448 QILILRDCDFLFVLP---PEVGSLECLEVLDLRGTEIKMLPKE 1487 (1866)
Q Consensus 1448 ~~L~L~~~~~~~~lP---~~i~~L~~L~~L~l~~~~i~~lp~~ 1487 (1866)
++|++++|.+....+ ..+..+++|++|++++|.+.++|..
T Consensus 123 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 123 KSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred CEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 999999998654433 3899999999999999999988864
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.00 E-value=2e-09 Score=117.32 Aligned_cols=123 Identities=27% Similarity=0.365 Sum_probs=101.1
Q ss_pred CcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEEecccc
Q 000202 1377 AKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILILRDC 1455 (1866)
Q Consensus 1377 l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~ 1455 (1866)
.+.+++.++.+..+|. ...++|+.|++++| .+..+|+..++.+++|++|+|++|.++.+|.. ++.+.+|++|+|++|
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3567888888888874 23478999999987 57788887778899999999999999988854 688999999999999
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceecccc
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~ 1501 (1866)
.+.+..|..++++++|++|++++|.++.+|.. +..+++|++|++.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 87655555678899999999999999988876 57788899888854
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=126.21 Aligned_cols=196 Identities=16% Similarity=0.136 Sum_probs=118.2
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELL 263 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 263 (1866)
...+++||+..++.+..++..+. ..+.+.|+|.+|+||||||+++++.....+.....-+ ...... ..+.
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~ 90 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC--------GVCDNC-REIE 90 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC--------SCSHHH-HHHH
T ss_pred cHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC--------cccHHH-HHHh
Confidence 34579999999999999998643 2347899999999999999999987654331110000 000000 0000
Q ss_pred HHHhccc-cccCccchhHHHHHHH--------hhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccccchhc
Q 000202 264 SKLLNDR-NVKNFQNISVNFQSKR--------LARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDKQVLT 332 (1866)
Q Consensus 264 ~~~~~~~-~~~~~~~~~~~~l~~~--------L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~ 332 (1866)
....... ............++.. ..+++.+|||||++ +...++.+...+.....+.++|+||+......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 0000000 0000000001111111 23467999999996 46667777766655566788999987654321
Q ss_pred c-C-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecc
Q 000202 333 N-C-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGC 391 (1866)
Q Consensus 333 ~-~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~ 391 (1866)
. . .....+++++++.+|..+++...+...... -..+....|++.++|+|..+..+..
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~ 229 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTD 229 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 1 123678999999999999998776432211 1245678899999999987765543
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.96 E-value=8.2e-10 Score=116.63 Aligned_cols=131 Identities=21% Similarity=0.198 Sum_probs=103.5
Q ss_pred CCCcccEEEccCCcCC-cccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcE
Q 000202 1395 SCPNLLTLFLQRNCRL-RVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEV 1473 (1866)
Q Consensus 1395 ~~~~L~~L~L~~~~~l-~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~ 1473 (1866)
..++|+.|++++|... ..+|.. ++.+++|++|++++|.++.+ ..++.+++|++|+|++|.+.+.+|..++++++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3478999999988533 367764 47899999999999999988 78999999999999999987778888888999999
Q ss_pred EEccCCCCCcCC--hhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecc
Q 000202 1474 LDLRGTEIKMLP--KEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSID 1535 (1866)
Q Consensus 1474 L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~ 1535 (1866)
|++++|.++.+| ..++.+++|++|+++++.- ..++. .....+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l------~~~~~--~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV------TNLND--YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG------GGSTT--HHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc------cchHH--HHHHHHHHCCCcccccCC
Confidence 999999999875 7799999999999876421 11111 001346778888888764
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.7e-09 Score=132.67 Aligned_cols=240 Identities=15% Similarity=0.123 Sum_probs=139.1
Q ss_pred CCCceeehhhHHHHHHhhhcC--CCCcEEEEEEecCCCchhHHHHHHHHhhhccc-----cc-eEEEEeeccccccccHH
Q 000202 185 SKDLIGVEWRIKEIESLLRTG--SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF-----EG-SYFACNVRAAEETGRLD 256 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~~--~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-----~~-~~~~~~~~~~~~~~~~~ 256 (1866)
+..|+||+.+++++..++... ....+.+.|+|++|+||||||+++++.....+ .. .+++. .. ......
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~-~~---~~~~~~ 93 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN-AR---HRETPY 93 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE-TT---TSCSHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE-CC---cCCCHH
Confidence 378999999999999998542 33456799999999999999999999765432 21 22332 11 222345
Q ss_pred HHHHHHHHHHhccccccCccchh-HHHHHHHh--hcCcEEEEEecCCCHH----H---HHHHhhccCCC--CCCCEEEEE
Q 000202 257 DLRKELLSKLLNDRNVKNFQNIS-VNFQSKRL--ARKKVLIVFDDVNHPR----Q---IELLIGRLDRF--ASGSQVIIT 324 (1866)
Q Consensus 257 ~l~~~ll~~~~~~~~~~~~~~~~-~~~l~~~L--~~k~~LlVlDdv~~~~----~---~~~l~~~~~~~--~~gs~IiiT 324 (1866)
.+...++..+............. ...+.+.+ .+++.+||||+++... . +..+....... ..+..+|+|
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 56666666664322211110111 13344444 3468899999998533 2 22223222211 446678888
Q ss_pred ccccchhccCc------c-ceeeecCCCCHHHHHHHHHhhc---CCCCCCChhHHHHHHHHHHHhC---CCcc-eeeeec
Q 000202 325 TRDKQVLTNCE------V-DHIYQMKELVHADAHKLFTQCA---FRGDHLDAGYTELAHKALKYAQ---GVPL-ALKVLG 390 (1866)
Q Consensus 325 TR~~~v~~~~~------~-~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~---GlPL-Al~~~g 390 (1866)
|+......... . ...+.+++++.++..+++...+ +...... .+....++++++ |.|- |+.++.
T Consensus 174 t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 87763322111 1 1478999999999999998764 2222222 234667788887 9993 333222
Q ss_pred cccc-----C---CCHHHHHHHHHHhccCCCchhhhhhhcccCCCChhhHHHHHHH
Q 000202 391 CYLC-----G---RSKEEWESAMRKLEIVPHMEIQEVLKISYDSLDDSQKRMHDLL 438 (1866)
Q Consensus 391 ~~L~-----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~~~~l 438 (1866)
.... + -+.+.+..++.... ...+.-++..|+.+++..+..+
T Consensus 251 ~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~ 299 (387)
T 2v1u_A 251 VAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSI 299 (387)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHH
Confidence 2111 1 25566666665542 1234455677877776554433
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=5.9e-10 Score=137.01 Aligned_cols=186 Identities=16% Similarity=0.169 Sum_probs=97.7
Q ss_pred cCcEEEccCCCCCCCCC------CCCCC-cccEEEccCCcCCcccChhHHhcC-----CCCcEEEccCCCCCCCC-hh--
Q 000202 1376 HAKMIFFMDNDLQTLPG------RPSCP-NLLTLFLQRNCRLRVIPPSFFELM-----TSLKVLNLSKTRIKSLP-ET-- 1440 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~------~~~~~-~L~~L~L~~~~~l~~~p~~~~~~l-----~~L~~L~Ls~~~i~~lp-~~-- 1440 (1866)
+++.|++++|.+...+. +..++ +|+.|+|++| .+.......+..+ ++|++|+|++|.+...+ ..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 46777777777665542 23455 6777777766 4444433333333 67777777777766433 32
Q ss_pred --hcCC-CCCcEEecccccCcccCCccc----cC-CCCCcEEEccCCCCC-----cCChhhcCCC-ccceeccccccccC
Q 000202 1441 --LVNL-KCLQILILRDCDFLFVLPPEV----GS-LECLEVLDLRGTEIK-----MLPKEIGKLT-SLRYLTVFFFGSMY 1506 (1866)
Q Consensus 1441 --i~~L-~~L~~L~L~~~~~~~~lP~~i----~~-L~~L~~L~l~~~~i~-----~lp~~i~~L~-~L~~L~l~~~~~~~ 1506 (1866)
+..+ ++|++|+|++|.+....+..+ .. .++|++|++++|.++ .++..+..++ +|++|+++++.- .
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l-~ 180 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL-A 180 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG-G
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC-c
Confidence 3334 677777777777544443333 23 246777777777666 3444455555 677777655321 1
Q ss_pred CCccccCCCCCCChhhhhcc-ccCcEeecccCCCCCccccccccccccccC-CCCCCEEEeecCCccc
Q 000202 1507 KSEYIKLPPDLISSDILSRL-QALETLSIDVHPGDKRWDKDVKIVITEVSG-LTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1507 ~~~~~~l~~~~~~~~~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~l~~ 1572 (1866)
......+ ...+..+ ++|+.|+++.+.... .....+...+.. .++|+.|+++.|.+..
T Consensus 181 ~~~~~~l------~~~l~~~~~~L~~L~Ls~N~i~~---~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 181 SKNCAEL------AKFLASIPASVTSLDLSANLLGL---KSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp GSCHHHH------HHHHHTSCTTCCEEECTTSCGGG---SCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred hhhHHHH------HHHHHhCCCCCCEEECCCCCCCh---hHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 0000000 0123334 467777776543211 011112333333 3467777777776654
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-09 Score=146.78 Aligned_cols=105 Identities=27% Similarity=0.295 Sum_probs=57.7
Q ss_pred CCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcE
Q 000202 1394 PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEV 1473 (1866)
Q Consensus 1394 ~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~ 1473 (1866)
..+++|+.|+|++| .+..+|..++ .+++|++|+|++|.|+.+|..|++|.+|++|+|++|.+. .+|..+++|.+|++
T Consensus 221 ~~l~~L~~L~Ls~n-~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 221 YDDQLWHALDLSNL-QIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKY 297 (727)
T ss_dssp -CCCCCCEEECTTS-CCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSE
T ss_pred ccCCCCcEEECCCC-CCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCE
Confidence 34555555555554 3445555543 455555555555555555555555555555555555533 55555555555555
Q ss_pred EEccCCCCCcCChhhcCCCccceecccc
Q 000202 1474 LDLRGTEIKMLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1474 L~l~~~~i~~lp~~i~~L~~L~~L~l~~ 1501 (1866)
|+|++|.|+.+|..|++|++|++|++++
T Consensus 298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp EECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred EECCCCCCCccChhhhcCCCccEEeCCC
Confidence 5555555555555555555555555543
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.90 E-value=7.3e-09 Score=117.64 Aligned_cols=184 Identities=10% Similarity=0.084 Sum_probs=114.6
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....+++|++..++.+..++.... ...+.|+|.+|+|||+||+++++.+........|+..... .......+ ...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~ 88 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS--DERGIDVV-RHK 88 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT--CTTCHHHH-HHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc--cccChHHH-HHH
Confidence 344679999999999999998653 2238999999999999999999876443322233322211 11111111 111
Q ss_pred HHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccchhc-cC-ccce
Q 000202 263 LSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQVLT-NC-EVDH 338 (1866)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~-~~-~~~~ 338 (1866)
+........ ....++.+|||||++. ....+.+...+.....+.++|+||+...... .. ....
T Consensus 89 ~~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 89 IKEFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHHHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 111111100 0135788999999974 4455556555554566788999987654221 11 1234
Q ss_pred eeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceee
Q 000202 339 IYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALK 387 (1866)
Q Consensus 339 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 387 (1866)
.+++++++.++..+++...+...... -..+....+++.++|.|..+.
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~ 201 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAI 201 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 78999999999999998766321111 123567788899999997543
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.4e-09 Score=118.44 Aligned_cols=119 Identities=22% Similarity=0.236 Sum_probs=102.9
Q ss_pred CCCCCCCccccc-cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh--h
Q 000202 1364 GLTEPPSEEEWT-HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE--T 1440 (1866)
Q Consensus 1364 ~~~~~~~~~~~~-~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~--~ 1440 (1866)
.+...+....+. +|+.|++++|.+..++.+..+++|+.|++++| .+..+|+.+++.+++|++|+|++|.+..+|. .
T Consensus 30 ~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~ 108 (176)
T 1a9n_A 30 KIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNSLVELGDLDP 108 (176)
T ss_dssp CCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGG
T ss_pred CCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCCcCCcchhhHh
Confidence 333444455555 99999999999998888899999999999988 6778898888899999999999999999997 8
Q ss_pred hcCCCCCcEEecccccCcccCCcc----ccCCCCCcEEEccCCCCCcC
Q 000202 1441 LVNLKCLQILILRDCDFLFVLPPE----VGSLECLEVLDLRGTEIKML 1484 (1866)
Q Consensus 1441 i~~L~~L~~L~L~~~~~~~~lP~~----i~~L~~L~~L~l~~~~i~~l 1484 (1866)
++.+++|++|++++|.+. .+|.. ++.+++|++||+++|.+.+.
T Consensus 109 l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 109 LASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp GGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred hhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 999999999999999964 67775 89999999999999976643
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.6e-09 Score=114.67 Aligned_cols=112 Identities=18% Similarity=0.273 Sum_probs=89.0
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEEeccccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILILRDCD 1456 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~ 1456 (1866)
+.+++++|.+..+|... .++|+.|+|++| .+..+++..|+.+++|++|+|++|.++.+|.. +.++++|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 57888889998888533 378999999987 57777776678899999999999999988865 5789999999999998
Q ss_pred CcccCCccccCCCCCcEEEccCCCCCcCChhhcCC
Q 000202 1457 FLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKL 1491 (1866)
Q Consensus 1457 ~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L 1491 (1866)
+....|..++++++|++|+|++|.+...|..+..+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l 127 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYL 127 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHH
T ss_pred cceeCHHHhccccCCCEEEeCCCCcccccccHHHH
Confidence 65443345888999999999999888777655443
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.88 E-value=5.3e-09 Score=115.58 Aligned_cols=106 Identities=28% Similarity=0.448 Sum_probs=95.7
Q ss_pred cCcEEEccCCCCCCCCC---CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEe
Q 000202 1376 HAKMIFFMDNDLQTLPG---RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILI 1451 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~---~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~ 1451 (1866)
+++.|++++|.+..++. +..+++|+.|+|++| .+..+++..|..+++|++|+|++|.++.+|. .+..+++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 88999999999998874 678999999999988 5667766666899999999999999998775 589999999999
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCC
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIK 1482 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~ 1482 (1866)
|++|.+.+..|..++.+++|++|++++|.+.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9999998888999999999999999999887
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.2e-09 Score=114.44 Aligned_cols=99 Identities=20% Similarity=0.264 Sum_probs=85.9
Q ss_pred ccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEccC
Q 000202 1399 LLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRG 1478 (1866)
Q Consensus 1399 L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~ 1478 (1866)
-+++++++| .+..+|..+ .++|++|+|++|.++.+|..+..+.+|++|+|++|.+....|..+.+|++|++|+|++
T Consensus 12 ~~~l~~~~~-~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNK-GLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTS-CCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCC-CCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 367888876 688888765 3689999999999999999999999999999999998777777899999999999999
Q ss_pred CCCCcCCh-hhcCCCccceecccc
Q 000202 1479 TEIKMLPK-EIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1479 ~~i~~lp~-~i~~L~~L~~L~l~~ 1501 (1866)
|.++.+|. .+..+++|++|++.+
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CccCEeCHHHhCCCCCCCEEECCC
Confidence 99998865 588889999988854
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.4e-09 Score=143.06 Aligned_cols=148 Identities=24% Similarity=0.261 Sum_probs=92.7
Q ss_pred cCcEEEccCCCCCCCCC-CCCCCcccEE-----EccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcE
Q 000202 1376 HAKMIFFMDNDLQTLPG-RPSCPNLLTL-----FLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQI 1449 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~-~~~~~~L~~L-----~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~ 1449 (1866)
+++.+.+..|.+...+. ......|..+ +++.| .+. +++..+..+.+|++|+|++|.+..+|..+.++.+|++
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n-~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIEN-RMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred ccceEEeeCCCCCcchhhHhhcCccCcccccCcccccc-cee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 45556666666655442 1222223222 22222 222 5566678899999999999999999999999999999
Q ss_pred EecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccC
Q 000202 1450 LILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQAL 1529 (1866)
Q Consensus 1450 L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L 1529 (1866)
|+|++|.+. .+|..+++|++|++|+|++|.|+.+|..+++|++|++|+++++. +..+|. .++.|++|
T Consensus 252 L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~------l~~lp~------~~~~l~~L 318 (727)
T 4b8c_D 252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM------VTTLPW------EFGNLCNL 318 (727)
T ss_dssp CBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC------CCCCCS------STTSCTTC
T ss_pred EEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC------CCccCh------hhhcCCCc
Confidence 999999865 89999999999999999999999999999999999999997642 123333 26778888
Q ss_pred cEeecccCC
Q 000202 1530 ETLSIDVHP 1538 (1866)
Q Consensus 1530 ~~L~l~~~~ 1538 (1866)
+.|+++.+.
T Consensus 319 ~~L~L~~N~ 327 (727)
T 4b8c_D 319 QFLGVEGNP 327 (727)
T ss_dssp CCEECTTSC
T ss_pred cEEeCCCCc
Confidence 888888654
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.86 E-value=8.5e-08 Score=118.85 Aligned_cols=280 Identities=14% Similarity=0.035 Sum_probs=164.2
Q ss_pred ccchhhHHHHHHHHHh----ccCCccEEEEEcCCCchHHHHHHHHhcCcccc----cc--cceEEEEEecCCC-CHHHHH
Q 000202 979 AVNYTQRNVRKIFRYV----NDVTASKIGVYGVGGIGKTAALKALISYPEVK----VM--FHVIIWVTVSRYW-NTRKIQ 1047 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~----~~--F~~~~wv~vs~~~-~~~~~~ 1047 (1866)
.+.|++++++++..++ .....+.+.|+|++|+||||||+.+++..... .. ....+|+++.... +...+.
T Consensus 21 ~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 100 (384)
T 2qby_B 21 EIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVL 100 (384)
T ss_dssp SCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHH
Confidence 3567778877777665 33445689999999999999999996532111 01 2356788877766 888899
Q ss_pred HHHHHHhccCCC--CccCHHHHHHHHHHHhCCCcEEEEEeCCCCccc-------hhhhcCCCCCCCCCcEEEEccCChhh
Q 000202 1048 KQVLRQLSLHCK--DRETDAQVAEKLWQVLNGEKFLLLLDDVWEQID-------LEAVGIPVPGSENGSKIFMASRELDV 1118 (1866)
Q Consensus 1048 ~~i~~~l~~~~~--~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~-------~~~l~~~l~~~~~gs~IivTTR~~~v 1118 (1866)
..++.++..... ...........+.+.+..++.+|||||++.... +..+.... .+..||+||+....
T Consensus 101 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 101 SSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSSTTT
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCCch
Confidence 999988843221 122335566777888887777999999976321 22222222 57788989887532
Q ss_pred hccC------CCCcEEEecCCChHHHHHHHHHHhcC----CCCCchHHHHHHHHHHHcC---CChH-HHHHHHHHh--h-
Q 000202 1119 CRNM------DVNMVVKLETLSMKDAWELFCKEVGG----IIQSPDIHLYARAIVKGCC---GLPL-LTIVTAKAL--A- 1181 (1866)
Q Consensus 1119 ~~~~------~~~~~~~l~~L~~~~a~~Lf~~~~~~----~~~~~~~~~~~~~I~~~c~---GlPL-Ai~~~g~~L--~- 1181 (1866)
.... .....+.+++++.++..++|...+.. ....+ +....|++.|+ |.|. |+..+-.+. +
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 1111 11238999999999999999987531 11222 33556777777 8887 433333322 2
Q ss_pred --CCCCHHHHHHHhhhCCCCccccccchhhHHHHHHHhHhccCCcchhHHHHhhcCCCCCccccHHHHHHHHHHcCccch
Q 000202 1182 --GERNVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCSLFPEDREVSIVEFIDYCIQEGIIVG 1259 (1866)
Q Consensus 1182 --~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~lk~cfly~s~Fp~~~~i~~~~Li~~W~aeG~i~~ 1259 (1866)
..-+.+.+..+++.. ....+.-+++.|+++ .|..+..++....+..+. +......-..|.-
T Consensus 254 ~~~~i~~~~v~~~~~~~-------------~~~~~~~~~~~l~~~-~~~~l~al~~~~~~~~~~-~~~~~~~~~~g~~-- 316 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDY-------------EQERLIEAVKALPFH-YKLALRSLIESEDVMSAH-KMYTDLCNKFKQK-- 316 (384)
T ss_dssp SSSCCCHHHHHHHHHHH-------------HHHHHHHHHHSSCHH-HHHHHHHHHTCCBHHHHH-HHHHHHHHHTTCC--
T ss_pred CCCccCHHHHHHHHHHH-------------hcchHHHHHHcCCHH-HHHHHHHHHHhcccChHH-HHHHHHHHHcCCC--
Confidence 123455555554331 113455667888865 344444455411101111 1111111112210
Q ss_pred hhHhHHHhHHHHHHHHHHhhhhhcc
Q 000202 1260 TLANAHKRGHQIVDVLVDASLLLIN 1284 (1866)
Q Consensus 1260 ~~~~~~~~~~~~~~~L~~~sll~~~ 1284 (1866)
.........+++.|.+.+++...
T Consensus 317 --~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 --PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp --CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred --CCCHHHHHHHHHHHHhCCCEEEE
Confidence 01224456788899999999753
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=7.3e-09 Score=133.99 Aligned_cols=100 Identities=24% Similarity=0.317 Sum_probs=90.9
Q ss_pred cccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEcc
Q 000202 1398 NLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLR 1477 (1866)
Q Consensus 1398 ~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~ 1477 (1866)
.|+.|+|++| .+..+|. ++.+++|++|+|++|.++.+|..+++|++|++|+|++|.+.+ +| .+++|++|++|+|+
T Consensus 442 ~L~~L~Ls~n-~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTS-CCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCC-CCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 5899999988 6777886 588999999999999999999999999999999999998654 78 89999999999999
Q ss_pred CCCCCcC--ChhhcCCCccceeccccc
Q 000202 1478 GTEIKML--PKEIGKLTSLRYLTVFFF 1502 (1866)
Q Consensus 1478 ~~~i~~l--p~~i~~L~~L~~L~l~~~ 1502 (1866)
+|.++.+ |..+++|++|++|+++++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 9999988 889999999999998653
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-08 Score=111.01 Aligned_cols=112 Identities=24% Similarity=0.290 Sum_probs=96.4
Q ss_pred cccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEE
Q 000202 1374 WTHAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQIL 1450 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L 1450 (1866)
.++++.|++.+|.+..+|. +..+++|+.|++++| .+..+|+..+..+++|++|+|++|.++.+|.. +..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence 3689999999999998874 578999999999988 67888888888999999999999999988865 6899999999
Q ss_pred ecccccCcccCCccccCCCCCcEEEccCCCCCcCCh
Q 000202 1451 ILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPK 1486 (1866)
Q Consensus 1451 ~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~ 1486 (1866)
+|++|.+.+..+..+.++++|++|++++|.+...+.
T Consensus 106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999998664444446889999999999998875443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.83 E-value=1e-08 Score=110.75 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=79.8
Q ss_pred CcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEEecccc
Q 000202 1377 AKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILILRDC 1455 (1866)
Q Consensus 1377 l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~ 1455 (1866)
.+.+++++|.+..+|... .++|+.|+|++| .+..+++..|..+++|++|+|++|.|+.+|.. +..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 357888888888887432 377888888877 56667666667788888888888888877754 478888888888888
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcCCh
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLPK 1486 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~ 1486 (1866)
.+.+..|..++++++|++|+|++|.+...+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 7655444457788888888888887764443
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.9e-08 Score=123.19 Aligned_cols=283 Identities=13% Similarity=0.078 Sum_probs=165.3
Q ss_pred ccchhhHHHHHHHHHhc----cCCccEEEEEcCCCchHHHHHHHHhcCccccc---c-cceEEEEEecCCCCHHHHHHHH
Q 000202 979 AVNYTQRNVRKIFRYVN----DVTASKIGVYGVGGIGKTAALKALISYPEVKV---M-FHVIIWVTVSRYWNTRKIQKQV 1050 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~-F~~~~wv~vs~~~~~~~~~~~i 1050 (1866)
.+.|++++++++..++. ....+.+.|+|++|+||||||+.+++...... . --..+|+++....+...+...+
T Consensus 20 ~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 99 (387)
T 2v1u_A 20 VLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAI 99 (387)
T ss_dssp CCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHH
Confidence 36678888888888873 24456789999999999999999965321110 0 1245678888878888999999
Q ss_pred HHHhccCCCC-ccCHHHHHHHHHHHh--CCCcEEEEEeCCCCcc----chhhh---cCCCCCC--CCCcEEEEccCChhh
Q 000202 1051 LRQLSLHCKD-RETDAQVAEKLWQVL--NGEKFLLLLDDVWEQI----DLEAV---GIPVPGS--ENGSKIFMASRELDV 1118 (1866)
Q Consensus 1051 ~~~l~~~~~~-~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~----~~~~l---~~~l~~~--~~gs~IivTTR~~~v 1118 (1866)
+.+++..... .....+....+.+.+ .+++++||||+++... ..+.+ ....... ..+..+|.||+....
T Consensus 100 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~ 179 (387)
T 2v1u_A 100 AEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGF 179 (387)
T ss_dssp HHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTT
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCch
Confidence 9999754322 223555566677776 4568999999998632 11222 1111111 345677878776532
Q ss_pred --------hccCCCCcEEEecCCChHHHHHHHHHHhcC----CCCCchHHHHHHHHHHHcC---CChHH-HHHHHHHhh-
Q 000202 1119 --------CRNMDVNMVVKLETLSMKDAWELFCKEVGG----IIQSPDIHLYARAIVKGCC---GLPLL-TIVTAKALA- 1181 (1866)
Q Consensus 1119 --------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~----~~~~~~~~~~~~~I~~~c~---GlPLA-i~~~g~~L~- 1181 (1866)
...+. ...+.+++++.++..+++...+.. ....++ ....+++.++ |.|-. +.++..+..
T Consensus 180 ~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 180 VENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDPD---VVPLCAALAAREHGDARRALDLLRVAGEI 255 (387)
T ss_dssp SSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS---HHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred HhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 12221 147899999999999999877531 122222 3455777777 99943 333322221
Q ss_pred ----C--CCCHHHHHHHhhhCCCCccccccchhhHHHHHHHhHhccCCcchhHHHHhhc-CCCCCccccHHHHHHHHHH-
Q 000202 1182 ----G--ERNVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCS-LFPEDREVSIVEFIDYCIQ- 1253 (1866)
Q Consensus 1182 ----~--~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~lk~cfly~s-~Fp~~~~i~~~~Li~~W~a- 1253 (1866)
+ .-+.+.+..+.... ....+.-++..|+.+ .+..++.++ ++-....+...++.+....
T Consensus 256 a~~~~~~~i~~~~v~~a~~~~-------------~~~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 256 AERRREERVRREHVYSARAEI-------------ERDRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHTTCSCBCHHHHHHHHHHH-------------HHHHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHcCCCCcCHHHHHHHHHHH-------------hhchHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 1 12344444443321 122345567888876 344444344 3432234555544443211
Q ss_pred ---cCccchhhHhHHHhHHHHHHHHHHhhhhhc
Q 000202 1254 ---EGIIVGTLANAHKRGHQIVDVLVDASLLLI 1283 (1866)
Q Consensus 1254 ---eG~i~~~~~~~~~~~~~~~~~L~~~sll~~ 1283 (1866)
.|.- .........+++.|...+++..
T Consensus 322 ~~~~~~~----~~~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 322 TSTLGLE----HVTLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HHHTTCC----CCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHhcCCC----CCCHHHHHHHHHHHHhCCCeEE
Confidence 2210 1123456678888999998875
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.83 E-value=4e-09 Score=129.53 Aligned_cols=190 Identities=16% Similarity=0.139 Sum_probs=128.7
Q ss_pred cccc-cCcEEEccCCCCCCCC--CCCC-----CCcccEEEccCCcCCcccChhH----HhcC-CCCcEEEccCCCCCCCC
Q 000202 1372 EEWT-HAKMIFFMDNDLQTLP--GRPS-----CPNLLTLFLQRNCRLRVIPPSF----FELM-TSLKVLNLSKTRIKSLP 1438 (1866)
Q Consensus 1372 ~~~~-~l~~l~l~~~~l~~l~--~~~~-----~~~L~~L~L~~~~~l~~~p~~~----~~~l-~~L~~L~Ls~~~i~~lp 1438 (1866)
..++ +|+.|++++|.+.... .+.. +++|+.|+|++|. +...+... +..+ ++|++|+|++|.+...+
T Consensus 47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 4456 8999999999988653 2223 3899999999884 55555442 2334 89999999999998665
Q ss_pred h-h----hcC-CCCCcEEecccccCcc----cCCccccCCC-CCcEEEccCCCCCcCCh-----hhcCC-Cccceecccc
Q 000202 1439 E-T----LVN-LKCLQILILRDCDFLF----VLPPEVGSLE-CLEVLDLRGTEIKMLPK-----EIGKL-TSLRYLTVFF 1501 (1866)
Q Consensus 1439 ~-~----i~~-L~~L~~L~L~~~~~~~----~lP~~i~~L~-~L~~L~l~~~~i~~lp~-----~i~~L-~~L~~L~l~~ 1501 (1866)
. . +.. ..+|++|+|++|.+.. .++..+..+. +|++|++++|.++..+. .+..+ ++|++|++++
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA 205 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence 3 3 334 3699999999998764 3445556666 99999999999985543 34555 5999999976
Q ss_pred ccccCCCccccCCCCCCChhhhhc-cccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1502 FGSMYKSEYIKLPPDLISSDILSR-LQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1502 ~~~~~~~~~~~l~~~~~~~~~l~~-L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
+. +.......+ ...+.. .++|+.|+++.+..... ....+...+..+++|+.|+++.|.+..
T Consensus 206 N~-i~~~~~~~l------~~~l~~~~~~L~~L~Ls~N~l~~~---~~~~l~~~~~~l~~L~~L~L~~n~l~~ 267 (362)
T 3goz_A 206 NL-LGLKSYAEL------AYIFSSIPNHVVSLNLCLNCLHGP---SLENLKLLKDSLKHLQTVYLDYDIVKN 267 (362)
T ss_dssp SC-GGGSCHHHH------HHHHHHSCTTCCEEECCSSCCCCC---CHHHHHHTTTTTTTCSEEEEEHHHHTT
T ss_pred CC-CChhHHHHH------HHHHhcCCCCceEEECcCCCCCcH---HHHHHHHHHhcCCCccEEEeccCCccc
Confidence 53 111110001 112444 35899999997653321 111233445778999999999987443
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.77 E-value=4.2e-08 Score=121.87 Aligned_cols=247 Identities=12% Similarity=0.077 Sum_probs=141.6
Q ss_pred CCCceeehhhHHHHHHhhhc----CCCCcEEEEEEecCCCchhHHHHHHHHhhhccc-cceEEEEeeccccccccHHHHH
Q 000202 185 SKDLIGVEWRIKEIESLLRT----GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF-EGSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~----~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
++.++||+.+++++..++.. .....+.+.|+|.+|+||||||+++++...... -..+++... .......+.
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~----~~~~~~~~~ 91 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF----IYRNFTAII 91 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT----TCCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCc----cCCCHHHHH
Confidence 36799999999999998875 222234899999999999999999998765542 123333311 222334566
Q ss_pred HHHHHHHhccccccCccc-hhHHHHHHHhh--cCcEEEEEecCCC--HHHHHHHhhccCCCC----CCCEEEEEccccch
Q 000202 260 KELLSKLLNDRNVKNFQN-ISVNFQSKRLA--RKKVLIVFDDVNH--PRQIELLIGRLDRFA----SGSQVIITTRDKQV 330 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~-~~~~~l~~~L~--~k~~LlVlDdv~~--~~~~~~l~~~~~~~~----~gs~IiiTTR~~~v 330 (1866)
..++..+........... .....+...+. +++.+||||+++. ...+..+...+.... .+..||+||++...
T Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 92 GEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 666665533211011110 11123333333 5688999999974 555666655543222 36778888887643
Q ss_pred hccCc-------cceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHh---------CCCcceeeeecccc-
Q 000202 331 LTNCE-------VDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYA---------QGVPLALKVLGCYL- 393 (1866)
Q Consensus 331 ~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~---------~GlPLAl~~~g~~L- 393 (1866)
..... ....+++++++.++..+++...+........-..+....+++.+ +|.|..+..+....
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 32221 12368999999999999998764210001112245678889999 78875433322211
Q ss_pred --c---C---CCHHHHHHHHHHhccCCCchhhhhhhcccCCCChhhHHHHHHHHHHh
Q 000202 394 --C---G---RSKEEWESAMRKLEIVPHMEIQEVLKISYDSLDDSQKRMHDLLRAMG 442 (1866)
Q Consensus 394 --~---~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~~~~l~~~~ 442 (1866)
. + -+.+....++..... ..+.-.+..|+.+++.++..++.+.
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~~-------~~~~~~l~~l~~~~~~~L~~l~~~~ 301 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVLF-------GISEEVLIGLPLHEKLFLLAIVRSL 301 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHSC-------CCCHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHhh-------hhHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0 1 133333333333321 1222334567888877766666443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.70 E-value=3.2e-08 Score=106.77 Aligned_cols=100 Identities=23% Similarity=0.276 Sum_probs=83.5
Q ss_pred cccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEc
Q 000202 1398 NLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDL 1476 (1866)
Q Consensus 1398 ~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l 1476 (1866)
..+.+++++| .+..+|..+ .++|++|+|++|.|+.+ |..+..+.+|++|+|++|.+.+..|..+.++++|++|+|
T Consensus 10 ~~~~l~~s~n-~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTS-CCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCC-CcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4678899877 678888766 47899999999999988 567899999999999999866555556789999999999
Q ss_pred cCCCCCcCChh-hcCCCccceecccc
Q 000202 1477 RGTEIKMLPKE-IGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1477 ~~~~i~~lp~~-i~~L~~L~~L~l~~ 1501 (1866)
++|.++.+|.. +.++++|++|++.+
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCC
Confidence 99999988775 88899999988864
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.70 E-value=6.5e-08 Score=120.00 Aligned_cols=195 Identities=13% Similarity=0.159 Sum_probs=122.6
Q ss_pred ccchhhHHHHHHHHHhc----cCCccEEEEEcCCCchHHHHHHHHhcCccccccc---ceEEEEEecCCCCHHHHHHHHH
Q 000202 979 AVNYTQRNVRKIFRYVN----DVTASKIGVYGVGGIGKTAALKALISYPEVKVMF---HVIIWVTVSRYWNTRKIQKQVL 1051 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~~~i~ 1051 (1866)
.+.||+++++.+.+++. ......+.|+|++|+||||||+.+++. ....+ ...+|+.+....+...+...++
T Consensus 21 ~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 46788889999888885 344568999999999999999999653 22222 2456787766667778888888
Q ss_pred HHhccCCCC-ccCHHHHHHHHHHHhC--CCcEEEEEeCCCCc------cchhhhcCCCCC-CCCCcEEEEccCChhhhcc
Q 000202 1052 RQLSLHCKD-RETDAQVAEKLWQVLN--GEKFLLLLDDVWEQ------IDLEAVGIPVPG-SENGSKIFMASRELDVCRN 1121 (1866)
Q Consensus 1052 ~~l~~~~~~-~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~------~~~~~l~~~l~~-~~~gs~IivTTR~~~v~~~ 1121 (1866)
.+++..... ..+..+....+.+.+. +++.+||||+++.. ..+..+...+.. ...+..+|+||+.......
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 777543221 2234555566666664 45899999999752 222222211111 2235667888886644322
Q ss_pred CC-------CCcEEEecCCChHHHHHHHHHHhcC-CCCCchHHHHHHHHHHHcC---CChHHHHH
Q 000202 1122 MD-------VNMVVKLETLSMKDAWELFCKEVGG-IIQSPDIHLYARAIVKGCC---GLPLLTIV 1175 (1866)
Q Consensus 1122 ~~-------~~~~~~l~~L~~~~a~~Lf~~~~~~-~~~~~~~~~~~~~I~~~c~---GlPLAi~~ 1175 (1866)
.. ....+.+++++.++..+++.+.+.. .....-..+....+++.++ |.|..+..
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ 243 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALD 243 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 21 1258999999999999999876531 0011111334555666666 99984443
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.69 E-value=2.6e-08 Score=120.30 Aligned_cols=185 Identities=14% Similarity=0.163 Sum_probs=113.1
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELL 263 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 263 (1866)
...+++|++..++.+..++..+.. ..+.|+|++|+||||+|+++++.+........++..... .... ....++++
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~--~~~~-~~~i~~~~ 93 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGNM--PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS--DDRG-IDVVRNQI 93 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCCC--CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT--SCCS-HHHHHTHH
T ss_pred CHHHHHCCHHHHHHHHHHHHcCCC--CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc--cccC-hHHHHHHH
Confidence 346799999999999999986532 228999999999999999999976432211112221111 1111 11112222
Q ss_pred HHHhccccccCccchhHHHHHHHh-hcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccchh-ccC-ccce
Q 000202 264 SKLLNDRNVKNFQNISVNFQSKRL-ARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQVL-TNC-EVDH 338 (1866)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~~-~~~~ 338 (1866)
..+..... .+ .+++.+||+||++. ....+.+...+....+++++|+||+...-. ... ....
T Consensus 94 ~~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 94 KHFAQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp HHHHHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce
Confidence 22111000 01 34588999999975 445555555554445678888888764321 111 1235
Q ss_pred eeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce-eeee
Q 000202 339 IYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA-LKVL 389 (1866)
Q Consensus 339 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA-l~~~ 389 (1866)
.+++.+++.++..+++...+...... -..+....+++.++|.|.. +..+
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 89999999999999998765321111 1235678899999999953 4443
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.3e-08 Score=107.02 Aligned_cols=99 Identities=24% Similarity=0.303 Sum_probs=81.7
Q ss_pred ccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEcc
Q 000202 1399 LLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLR 1477 (1866)
Q Consensus 1399 L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~ 1477 (1866)
.+.+++++| .+..+|..+ .++|++|+|++|.++.+ |..++++++|++|+|++|.+.+..|..++++++|++|+|+
T Consensus 14 ~~~l~~~~n-~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNI-RLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSS-CCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCC-CCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 367888877 678888866 37899999999999987 5678999999999999998655433446899999999999
Q ss_pred CCCCCcCChh-hcCCCccceecccc
Q 000202 1478 GTEIKMLPKE-IGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1478 ~~~i~~lp~~-i~~L~~L~~L~l~~ 1501 (1866)
+|.|+.+|.. ++++++|++|++.+
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CCccceeCHHHhccccCCCEEEeCC
Confidence 9999998876 88899999988854
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.68 E-value=5.2e-10 Score=124.47 Aligned_cols=110 Identities=20% Similarity=0.221 Sum_probs=77.6
Q ss_pred CCCCC-CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccc
Q 000202 1387 LQTLP-GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEV 1465 (1866)
Q Consensus 1387 l~~l~-~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i 1465 (1866)
+..+| .+..+++|+.|++++| .+..+| . +..+++|++|+|++|.++.+|..++.+++|++|+|++|.+. .+| .+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~ 111 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTN-NIEKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA-SLS-GI 111 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEE-EESCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECC-CHH-HH
T ss_pred HhhhhHHHhcCCCCCEEECCCC-CCcccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCC-cCC-cc
Confidence 33444 3456677777777766 455566 3 46677888888888877777777777778888888887744 355 57
Q ss_pred cCCCCCcEEEccCCCCCcCCh--hhcCCCccceecccc
Q 000202 1466 GSLECLEVLDLRGTEIKMLPK--EIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1466 ~~L~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~ 1501 (1866)
+++++|++|++++|.++.+|. .+.++++|++|++.+
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC
Confidence 777788888888887777654 577778888887755
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.61 E-value=8e-07 Score=110.27 Aligned_cols=287 Identities=13% Similarity=0.097 Sum_probs=165.7
Q ss_pred ccchhhHHHHHHHHHhcc----CCcc--EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHH
Q 000202 979 AVNYTQRNVRKIFRYVND----VTAS--KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLR 1052 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~----~~~~--vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 1052 (1866)
.+.||+++++++..++.. .... .+.|+|.+|+||||||+.+++....... ...++++++...+...+...++.
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHHH
Confidence 356788888888777743 3334 8999999999999999999653221111 24567777777788899999998
Q ss_pred HhccCCCC-ccCHHHHHHHHHHHhC--CCcEEEEEeCCCCc--cchhhhcCCCCCC-C---CCcEEEEccCChhhhccCC
Q 000202 1053 QLSLHCKD-RETDAQVAEKLWQVLN--GEKFLLLLDDVWEQ--IDLEAVGIPVPGS-E---NGSKIFMASRELDVCRNMD 1123 (1866)
Q Consensus 1053 ~l~~~~~~-~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~--~~~~~l~~~l~~~-~---~gs~IivTTR~~~v~~~~~ 1123 (1866)
.++..... ..........+.+.+. +++.+||||+++.. .....+...+... . .+..||+||+.........
T Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 97 SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp HTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred HhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 88654322 2234555566666553 66899999999763 3334443333211 1 3667888887664332221
Q ss_pred -------CCcEEEecCCChHHHHHHHHHHhcCC-CCCchHHHHHHHHHHHc---------CCChHHHHHHHHHhh-----
Q 000202 1124 -------VNMVVKLETLSMKDAWELFCKEVGGI-IQSPDIHLYARAIVKGC---------CGLPLLTIVTAKALA----- 1181 (1866)
Q Consensus 1124 -------~~~~~~l~~L~~~~a~~Lf~~~~~~~-~~~~~~~~~~~~I~~~c---------~GlPLAi~~~g~~L~----- 1181 (1866)
....+.+.+++.++..+++...+... ....--.+....|++.+ +|.|..+..+.....
T Consensus 177 ~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 177 PSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp HHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 12379999999999999998765320 00111234566788888 788755444333221
Q ss_pred -CC--CCHHHHHHHhhhCCCCccccccchhhHHHHHHHhHhccCCcchhHHHHhhcCCC---CCccccHHHHHHHHHH--
Q 000202 1182 -GE--RNVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCSLFP---EDREVSIVEFIDYCIQ-- 1253 (1866)
Q Consensus 1182 -~~--~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~lk~cfly~s~Fp---~~~~i~~~~Li~~W~a-- 1253 (1866)
+. -+.+....+...... ..+.-.+..||.+ .+.++..++.+. .+..+....+...+..
T Consensus 257 ~~~~~i~~~~v~~~~~~~~~-------------~~~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 257 NGRKHIAPEDVRKSSKEVLF-------------GISEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp TTCSSCCHHHHHHHHHHHSC-------------CCCHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred hCCCCcCHHHHHHHHHHHhh-------------hhHHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 11 122222222221100 0111235567765 455555555443 2224555555544332
Q ss_pred --cCccchhhHhHHHhHHHHHHHHHHhhhhhcc
Q 000202 1254 --EGIIVGTLANAHKRGHQIVDVLVDASLLLIN 1284 (1866)
Q Consensus 1254 --eG~i~~~~~~~~~~~~~~~~~L~~~sll~~~ 1284 (1866)
.|... -.......+++.|.+.+++...
T Consensus 323 ~~~~~~~----~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 323 EEYGERP----RVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHTTCCC----CCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHcCCCC----CCHHHHHHHHHHHHhCCCeEEe
Confidence 12111 0123456788999999999753
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=3e-07 Score=105.81 Aligned_cols=195 Identities=10% Similarity=0.058 Sum_probs=111.4
Q ss_pred ccccchhhHHHHHHHHHhccCC-ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHh-
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVT-ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQL- 1054 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l- 1054 (1866)
...+.|+++.++.+..++.... .+.+.|+|++|+||||||+.+++.......+.. ........ ...+....
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIEQGRF 94 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHHTTCC
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHhccCC
Confidence 3356788888888888885443 357899999999999999999653221111100 00000000 00000000
Q ss_pred ----ccCCCCccCHHHHHHHHHHH-----hCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCChhhhc-c-
Q 000202 1055 ----SLHCKDRETDAQVAEKLWQV-----LNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRELDVCR-N- 1121 (1866)
Q Consensus 1055 ----~~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~-~- 1121 (1866)
............ ...+.+. ..+++.+||+||++. ...++.+...+.....+..+|+||+...... .
T Consensus 95 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 95 VDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp SSEEEEETTCGGGHHH-HHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHH
T ss_pred cceEEecCcccccHHH-HHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHH
Confidence 000000011111 1122222 235679999999975 3445555444433345678888887654211 1
Q ss_pred CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 000202 1122 MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKAL 1180 (1866)
Q Consensus 1122 ~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L 1180 (1866)
......+++++++.++..+++.+.+....... -.+....|++.|+|.|..+..+...+
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB-CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11236899999999999999988764322111 13456789999999999888776544
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.6e-07 Score=111.71 Aligned_cols=185 Identities=18% Similarity=0.159 Sum_probs=113.7
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKE 261 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1866)
|....+++|++..++.+..++..+. ...+.|+|++|+||||+|+++++.+........++..... .... .....+
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~--~~~~-~~~~~~ 95 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS--DERG-INVIRE 95 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT--CHHH-HHTTHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc--ccCc-hHHHHH
Confidence 3345679999999999999998653 2348999999999999999999976433211222221111 0000 011111
Q ss_pred HHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccchh-ccC-ccc
Q 000202 262 LLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQVL-TNC-EVD 337 (1866)
Q Consensus 262 ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~~-~~~ 337 (1866)
.+........ ...+++.++|+|+++. .+..+.+...+.....++++|+||....-. ... ...
T Consensus 96 ~~~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 96 KVKEFARTKP--------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp HHHHHHHSCC--------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred HHHHHHhhCC--------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC
Confidence 1111100000 0125688999999974 455666666655556678899888765321 111 123
Q ss_pred eeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceee
Q 000202 338 HIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALK 387 (1866)
Q Consensus 338 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 387 (1866)
..+++.+++.++..+++...+..... .-..+....+++.++|.|..+.
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~ 209 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAI 209 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHH
Confidence 47899999999999999876532221 1224567788899999887543
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.53 E-value=4.9e-07 Score=102.35 Aligned_cols=188 Identities=11% Similarity=-0.010 Sum_probs=111.1
Q ss_pred ccccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhcc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 1056 (1866)
...+.|+++.++.+..++.....+.+.|+|.+|+|||++|+.+++.......-...+.+..+...+...+...+......
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcc
Confidence 33567788888888888876655558999999999999999996532111111123334444333333222221111100
Q ss_pred CCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCChhhh-cc-CCCCcEEEecC
Q 000202 1057 HCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRELDVC-RN-MDVNMVVKLET 1132 (1866)
Q Consensus 1057 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~v~-~~-~~~~~~~~l~~ 1132 (1866)
.. .-.+++.+||+||++.. ...+.+...+.....+.++|+||+..... .. ......+.+.+
T Consensus 96 ~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~ 160 (226)
T 2chg_A 96 AP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKP 160 (226)
T ss_dssp CC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred cC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCC
Confidence 00 01357899999999763 33344433333334567888888765421 11 11124789999
Q ss_pred CChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 000202 1133 LSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKAL 1180 (1866)
Q Consensus 1133 L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L 1180 (1866)
++.++..+++.+.+....... -.+....|++.++|.|..+..+...+
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGVKI-TEDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999987764211111 12446678899999998665544433
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-08 Score=112.40 Aligned_cols=101 Identities=22% Similarity=0.188 Sum_probs=77.0
Q ss_pred cccEEEccCCc-CCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEc
Q 000202 1398 NLLTLFLQRNC-RLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDL 1476 (1866)
Q Consensus 1398 ~L~~L~L~~~~-~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l 1476 (1866)
.|+.+.+.++. .+..+|..+ +.+++|++|+|++|.++.+| .++.+++|++|+|++|.+ ..+|..++.+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~-~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATL-STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHH-HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHH-hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCc-ccccchhhcCCcCCEEEC
Confidence 45555555432 345555544 77888999999988888888 888888899999988874 477887777888899999
Q ss_pred cCCCCCcCChhhcCCCccceeccccc
Q 000202 1477 RGTEIKMLPKEIGKLTSLRYLTVFFF 1502 (1866)
Q Consensus 1477 ~~~~i~~lp~~i~~L~~L~~L~l~~~ 1502 (1866)
++|.++.+| .++++++|++|++.++
T Consensus 101 ~~N~l~~l~-~~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 101 SYNQIASLS-GIEKLVNLRVLYMSNN 125 (198)
T ss_dssp EEEECCCHH-HHHHHHHSSEEEESEE
T ss_pred cCCcCCcCC-ccccCCCCCEEECCCC
Confidence 888888877 6788888888887653
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.42 E-value=5.1e-07 Score=110.07 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=70.3
Q ss_pred EEccCC-CCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEecccccC
Q 000202 1380 IFFMDN-DLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDCDF 1457 (1866)
Q Consensus 1380 l~l~~~-~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~ 1457 (1866)
++++++ .+..+|.+..+++|+.|+|++++.+..+|+..|+.|++|++|+|++|.|+.+| ..|.+|.+|++|+|++|.+
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 466666 67777776667777888887523677777666677778888888888777665 3567777888888877775
Q ss_pred cccCCcc-ccCCCCCcEEEccCCCCCc
Q 000202 1458 LFVLPPE-VGSLECLEVLDLRGTEIKM 1483 (1866)
Q Consensus 1458 ~~~lP~~-i~~L~~L~~L~l~~~~i~~ 1483 (1866)
. .+|.. +..+. |+.|+|.+|.+..
T Consensus 93 ~-~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 93 E-SLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp S-CCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred c-eeCHHHcccCC-ceEEEeeCCCccC
Confidence 4 44443 33343 7777877777663
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.39 E-value=3e-07 Score=111.14 Aligned_cols=179 Identities=18% Similarity=0.205 Sum_probs=121.0
Q ss_pred cccCcEEEccCCCCC--------------------CCC--CCCC--------CCcccEEEccCCcCCcccChhHHhcCCC
Q 000202 1374 WTHAKMIFFMDNDLQ--------------------TLP--GRPS--------CPNLLTLFLQRNCRLRVIPPSFFELMTS 1423 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~--------------------~l~--~~~~--------~~~L~~L~L~~~~~l~~~p~~~~~~l~~ 1423 (1866)
+++|+.|++++|.+. .+| .+.+ |++|+.|.|.. .+..+++..|.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcc
Confidence 567888888887776 333 2446 88888888875 577888888888888
Q ss_pred CcEEEccCCCCCCCC-hhhcCCCCCcEEeccccc-----------------Ccc---------cCCccc-----------
Q 000202 1424 LKVLNLSKTRIKSLP-ETLVNLKCLQILILRDCD-----------------FLF---------VLPPEV----------- 1465 (1866)
Q Consensus 1424 L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~-----------------~~~---------~lP~~i----------- 1465 (1866)
|+.|++++|.+..++ ..+..+.++.++.+.... .+. .+|..+
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 888888888877665 455566666666544311 000 000000
Q ss_pred -----------------cCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccc
Q 000202 1466 -----------------GSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQ 1527 (1866)
Q Consensus 1466 -----------------~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~ 1527 (1866)
..+.+|+.|+|++|.++.+|.. |.++++|+.|.+... ... ++...+.+|.
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-------i~~-----I~~~aF~~~~ 273 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-------LKT-----IGQRVFSNCG 273 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-------CCE-----ECTTTTTTCT
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-------cce-----ehHHHhhCCh
Confidence 0267899999999999998865 888999999987431 111 2334578888
Q ss_pred cCc-EeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchH
Q 000202 1528 ALE-TLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVA 1574 (1866)
Q Consensus 1528 ~L~-~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 1574 (1866)
+|+ .+.+.. +....-...+.+|++|+.|++..+.+..++
T Consensus 274 ~L~~~l~l~~--------~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 274 RLAGTLELPA--------SVTAIEFGAFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp TCCEEEEECT--------TCCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred hccEEEEEcc--------cceEEchhhhhCCccCCEEEeCCCccCccc
Confidence 998 888863 111223466788999999999888877664
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.37 E-value=7.4e-07 Score=108.59 Aligned_cols=100 Identities=20% Similarity=0.144 Sum_probs=86.0
Q ss_pred cEEEccCCcCCcccChhHHhcCCCCcEEEccC-CCCCCCC-hhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEcc
Q 000202 1400 LTLFLQRNCRLRVIPPSFFELMTSLKVLNLSK-TRIKSLP-ETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLR 1477 (1866)
Q Consensus 1400 ~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~-~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~ 1477 (1866)
..++++++..+..+|. +..+++|++|+|++ |.+..+| ..+++|.+|++|+|++|.+.+..|..|++|++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3567776647888998 58899999999996 9999888 579999999999999999888888889999999999999
Q ss_pred CCCCCcCChhhcCCCccceecccc
Q 000202 1478 GTEIKMLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1478 ~~~i~~lp~~i~~L~~L~~L~l~~ 1501 (1866)
+|.|+.+|..+....+|+.|++.+
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~ 112 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSG 112 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCS
T ss_pred CCccceeCHHHcccCCceEEEeeC
Confidence 999999987755544599998864
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.2e-06 Score=105.63 Aligned_cols=193 Identities=15% Similarity=0.113 Sum_probs=111.6
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELL 263 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 263 (1866)
...+++|++..++.+...+..+. ..+.+.|+|.+|+||||+|+++++......... ... ...... ...+.
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-----~~~---~~~~~~-~~~~~ 83 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-----ATP---CGVCDN-CREIE 83 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-----SSC---CSSSHH-HHHHH
T ss_pred chhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-----CCC---CcccHH-HHHHh
Confidence 34579999999999999997643 234788999999999999999998664322100 000 000000 00000
Q ss_pred HH----HhccccccCccchhHHHHHHHh-----hcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccch-h
Q 000202 264 SK----LLNDRNVKNFQNISVNFQSKRL-----ARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQV-L 331 (1866)
Q Consensus 264 ~~----~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~ 331 (1866)
.. +................+.+.+ .+++.+||+||++. ....+.+...+.....+..+|++|.+..- .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 0000000000000111222222 34678999999973 55666666666555567778877765432 1
Q ss_pred ccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeee
Q 000202 332 TNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKV 388 (1866)
Q Consensus 332 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~ 388 (1866)
... .....+++.+++.++..+++...+-.... .-..+....+++.++|.|..+..
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~--~~~~~a~~~l~~~~~G~~r~~~~ 219 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALS 219 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHSSSCHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHCCCCHHHHHH
Confidence 111 12367899999999999999765521111 11235577899999999875543
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=98.31 E-value=2.2e-06 Score=103.04 Aligned_cols=180 Identities=11% Similarity=0.135 Sum_probs=110.2
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc-cccceEEEEeeccccccccHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR-HFEGSYFACNVRAAEETGRLDDLRKE 261 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1866)
....+++|++..++.+.+++..+. ...+.++|.+|+|||++|+++++.+.. .+...+...+................
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKE 91 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHH
Confidence 344679999999999999987643 223899999999999999999987632 22211111111110000000111111
Q ss_pred HHHHHhccccccCccchhHHHHHHHh-hcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccch-hccC-cc
Q 000202 262 LLSKLLNDRNVKNFQNISVNFQSKRL-ARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQV-LTNC-EV 336 (1866)
Q Consensus 262 ll~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~~~-~~ 336 (1866)
+. ... .+ .+++.++|+|+++. .+..+.+...+.....+.++|+||....- .... ..
T Consensus 92 ~~----~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 152 (319)
T 2chq_A 92 FA----RTA---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (319)
T ss_dssp HH----HSC---------------CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTT
T ss_pred HH----hcC---------------CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhh
Confidence 10 000 01 25678999999974 45566777777666677888888865532 1111 12
Q ss_pred ceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce
Q 000202 337 DHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 337 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
...+++.+++.++..+++...+-..... -..+....+++.++|.+..
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~ 199 (319)
T 2chq_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRK 199 (319)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHH
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 3578999999999999988765322211 1245567788888888754
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.26 E-value=2.3e-06 Score=103.11 Aligned_cols=184 Identities=12% Similarity=0.081 Sum_probs=108.4
Q ss_pred ccccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhcc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 1056 (1866)
...+.|+++.++.+.+++.....+.+.++|++|+||||+|+.+++.-.-...-...++++.+...+...+ +.++..+..
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~ 98 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKHFAQ 98 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHHHHh
Confidence 3456788888888888887666555899999999999999999653211111112334443332222221 222222210
Q ss_pred CCCCccCHHHHHHHHHHHh-CCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCChhh-hcc-CCCCcEEEec
Q 000202 1057 HCKDRETDAQVAEKLWQVL-NGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRELDV-CRN-MDVNMVVKLE 1131 (1866)
Q Consensus 1057 ~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~v-~~~-~~~~~~~~l~ 1131 (1866)
.. ..+ .+++.+||+||++.. ..++.+...+.....++++|+||+...- ... ......+++.
T Consensus 99 ~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~ 164 (323)
T 1sxj_B 99 KK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYS 164 (323)
T ss_dssp BC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred cc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeec
Confidence 00 011 456899999999762 3344444333333456788888876432 111 1122489999
Q ss_pred CCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHH-HHHH
Q 000202 1132 TLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLL-TIVT 1176 (1866)
Q Consensus 1132 ~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLA-i~~~ 1176 (1866)
+++.++..+++...+......- -.+....|++.|+|.|.. +..+
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKLEDVKY-TNDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999987653211111 124567799999999954 4444
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.4e-06 Score=103.10 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=25.1
Q ss_pred ccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecC
Q 000202 1525 RLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFP 1568 (1866)
Q Consensus 1525 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 1568 (1866)
.+++|+.|++..+.. ...-...+.+|++|+.|++..|
T Consensus 224 ~~~~L~~l~L~~n~i-------~~I~~~aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 224 YMPNLVSLDISKTNA-------TTIPDFTFAQKKYLLKIKLPHN 260 (329)
T ss_dssp HCTTCCEEECTTBCC-------CEECTTTTTTCTTCCEEECCTT
T ss_pred hcCCCeEEECCCCCc-------ceecHhhhhCCCCCCEEECCcc
Confidence 378899999874321 1123345788999999988654
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=98.16 E-value=7e-06 Score=98.83 Aligned_cols=174 Identities=13% Similarity=0.058 Sum_probs=97.1
Q ss_pred ccchhhHHHHHHHHHhc-----cCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHH
Q 000202 979 AVNYTQRNVRKIFRYVN-----DVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 1053 (1866)
.+.|+...+..+...+. ......|.|+|++|+|||++|+.+++.. .. ..+++..+......++...
T Consensus 13 ~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~--~~---~~~~~~~~~~~~~~~l~~~---- 83 (324)
T 1hqc_A 13 EYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL--GV---NLRVTSGPAIEKPGDLAAI---- 83 (324)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH--TC---CEEEECTTTCCSHHHHHHH----
T ss_pred HhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEeccccCChHHHHHH----
Confidence 45666666666655552 1233568899999999999999996522 11 2234443322222221111
Q ss_pred hccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCcc--chhhhcCCCC--------C----------CCCCcEEEEcc
Q 000202 1054 LSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQI--DLEAVGIPVP--------G----------SENGSKIFMAS 1113 (1866)
Q Consensus 1054 l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~--------~----------~~~gs~IivTT 1113 (1866)
+ ... ..+..+|+||++.... ..+.+...+. . ...+.++|.||
T Consensus 84 l-----------------~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t 145 (324)
T 1hqc_A 84 L-----------------ANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT 145 (324)
T ss_dssp H-----------------TTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE
T ss_pred H-----------------HHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC
Confidence 1 110 1345688888887532 2222211100 0 00234666666
Q ss_pred CChhhh-ccC--CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 000202 1114 RELDVC-RNM--DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKAL 1180 (1866)
Q Consensus 1114 R~~~v~-~~~--~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L 1180 (1866)
...... ... ....++.+.+++.++..+++.+.+......- -.+....+++.|+|.|-.+..+...+
T Consensus 146 ~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 146 TRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI-TEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp SCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 644321 111 1135899999999999999888765322111 13456778999999998877666554
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=98.13 E-value=6.2e-06 Score=99.28 Aligned_cols=173 Identities=16% Similarity=0.159 Sum_probs=104.8
Q ss_pred ccCCCceeehhhHHHHHHhhhcC---CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTG---SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~---~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
....+|||++..++.+...+... ......|.|+|.+|+|||++|+++++.....| .++ +... ......
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~-~~~~---~~~~~~-- 79 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVT-SGPA---IEKPGD-- 79 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEE-CTTT---CCSHHH--
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEE-eccc---cCChHH--
Confidence 34568999999999988887631 12335688999999999999999998764332 111 1111 011111
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHhh---cCcEEEEEecCCC--HHHHHHHhhccCCC------------------C
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRLA---RKKVLIVFDDVNH--PRQIELLIGRLDRF------------------A 316 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L~---~k~~LlVlDdv~~--~~~~~~l~~~~~~~------------------~ 316 (1866)
+...+. .++.+|+||+++. ......+...+... .
T Consensus 80 -----------------------l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~ 136 (324)
T 1hqc_A 80 -----------------------LAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL 136 (324)
T ss_dssp -----------------------HHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEEC
T ss_pred -----------------------HHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCC
Confidence 111111 3567899999975 33334333222111 1
Q ss_pred CCCEEEEEccccchh-ccC--ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeee
Q 000202 317 SGSQVIITTRDKQVL-TNC--EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVL 389 (1866)
Q Consensus 317 ~gs~IiiTTR~~~v~-~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~ 389 (1866)
++.++|.||...... ... ....++++.+++.+|..+++...+...... -..+....++++++|.|-.+..+
T Consensus 137 ~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~ 210 (324)
T 1hqc_A 137 PRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRL 210 (324)
T ss_dssp CCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHH
T ss_pred CCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHH
Confidence 245677766644322 111 113578999999999999988776332211 22456788999999999766544
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.13 E-value=6.9e-05 Score=92.34 Aligned_cols=98 Identities=16% Similarity=0.192 Sum_probs=66.8
Q ss_pred CCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEecccccCcccCCccccCCCCCcEE
Q 000202 1396 CPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVL 1474 (1866)
Q Consensus 1396 ~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L 1474 (1866)
+..+..+.+.. .+..++...|.++ +|+.+.|..+ ++.++. .+.+ .+|+.+.|.. .+...-+..|.++.+|+.+
T Consensus 112 ~~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC--ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 45666666653 3667777777764 6888888665 666653 4444 4688888875 3333334577888888888
Q ss_pred EccCCCCCcCChhhcCCCccceecc
Q 000202 1475 DLRGTEIKMLPKEIGKLTSLRYLTV 1499 (1866)
Q Consensus 1475 ~l~~~~i~~lp~~i~~L~~L~~L~l 1499 (1866)
++++|.++.+|.......+|+.+.+
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEEC
T ss_pred ecCCCcceEechhhEeecccCEEEe
Confidence 8888888888776444567777665
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.5e-07 Score=113.04 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=73.3
Q ss_pred cccCcEEEccCCCCCCCC-----C-C-CCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhh----
Q 000202 1374 WTHAKMIFFMDNDLQTLP-----G-R-PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETL---- 1441 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~~l~-----~-~-~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i---- 1441 (1866)
.++++.+++++|.+.... . + ..+++|+.|+|++|..-..-...++..+++|++|+|++|.+.... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 456778888888776321 0 1 133577778887773222212233344567777888777776322 222
Q ss_pred -cCCCCCcEEecccccCcc----cCCccccCCCCCcEEEccCCCCCc-----CChhhcCCCccceecccc
Q 000202 1442 -VNLKCLQILILRDCDFLF----VLPPEVGSLECLEVLDLRGTEIKM-----LPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1442 -~~L~~L~~L~L~~~~~~~----~lP~~i~~L~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~ 1501 (1866)
...++|++|+|++|.+.. .++..+..+++|++|+|++|.|.. ++..+...++|++|++++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 235667777777776432 244445666777777777776652 233445555555555543
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.12 E-value=2.3e-06 Score=94.24 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=41.9
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
....++||+..++++.+.+... ..+.+.|+|.+|+|||+||+++++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3467999999999999998753 3456889999999999999999987643
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.08 E-value=1e-05 Score=95.31 Aligned_cols=175 Identities=15% Similarity=0.188 Sum_probs=99.7
Q ss_pred ccCCCceeehhhHHHHHHhhhcC-----------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccc
Q 000202 183 SESKDLIGVEWRIKEIESLLRTG-----------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEE 251 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~-----------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (1866)
....+++|++..+++|.+.+... ....+.+.|+|.+|+|||+||+++++.....| +........
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~----~~v~~~~~~- 88 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF----IRVVGSELV- 88 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE----EEEEGGGGC-
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehHHHH-
Confidence 34567999999999998877531 12345689999999999999999998764432 111111100
Q ss_pred cccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccC--
Q 000202 252 TGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLD-- 313 (1866)
Q Consensus 252 ~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~-- 313 (1866)
....... .......+......++.+|+||+++.. ..+..++..+.
T Consensus 89 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 89 KKFIGEG-----------------ASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp CCSTTHH-----------------HHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred HhccchH-----------------HHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 0000000 000011222233456789999999643 12333333322
Q ss_pred CCCCCCEEEEEccccchhc-----cCccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 314 RFASGSQVIITTRDKQVLT-----NCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 314 ~~~~gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
....+..||.||.....+. .......+.++.++.++..++|...+........ .....+++.+.|.
T Consensus 152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~ 222 (285)
T 3h4m_A 152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGC 222 (285)
T ss_dssp CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTC
T ss_pred CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCC
Confidence 1233567788887554332 1122457899999999999999877643221111 1134556666653
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=98.03 E-value=4.3e-06 Score=95.87 Aligned_cols=170 Identities=14% Similarity=0.121 Sum_probs=95.7
Q ss_pred cCCCceeeh---hhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHH
Q 000202 184 ESKDLIGVE---WRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 184 ~~~~~vGr~---~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
..++|+|.+ ..++.+..+...+ ..+.+.|+|.+|+||||||+++++..........|+.. .... ...
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~-~~~~--~~~----- 95 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL-GIHA--SIS----- 95 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG-GGGG--GSC-----
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH-HHHH--HHH-----
Confidence 446788743 4556666666543 35678999999999999999999976654333444432 1100 000
Q ss_pred HHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCHH--H--HHHHhhccCCC-CCCC-EEEEEccccch-hcc
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPR--Q--IELLIGRLDRF-ASGS-QVIITTRDKQV-LTN 333 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~--~~~l~~~~~~~-~~gs-~IiiTTR~~~v-~~~ 333 (1866)
.. .+ +.+ .++.+|||||++... . .+.+...+... ..+. ++|+||+...- ...
T Consensus 96 ---------------~~----~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 96 ---------------TA----LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp ---------------GG----GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred ---------------HH----HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 00 00 011 345789999996421 1 22232221110 1122 58888764321 111
Q ss_pred --------CccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCccee
Q 000202 334 --------CEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLAL 386 (1866)
Q Consensus 334 --------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl 386 (1866)
+....++++++++.++..+++...+..... .-..+....+++.++|.+-.+
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l 213 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTL 213 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHH
Confidence 111268899999999999999876532111 112455677888888876433
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=9.6e-06 Score=101.18 Aligned_cols=178 Identities=12% Similarity=0.156 Sum_probs=98.2
Q ss_pred CCCce-eehhhH--HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHH
Q 000202 185 SKDLI-GVEWRI--KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKE 261 (1866)
Q Consensus 185 ~~~~v-Gr~~~l--~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1866)
.++|| |....+ ..+......... ...+.|+|.+|+||||||+++++.....++..-++.... ..+..+
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~--------~~~~~~ 174 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS--------EKFLND 174 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH--------HHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH--------HHHHHH
Confidence 34576 654443 233333333222 567999999999999999999998766654433322111 112233
Q ss_pred HHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----HHHHHHhhccCC-CCCCCEEEEEccccch------
Q 000202 262 LLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----RQIELLIGRLDR-FASGSQVIITTRDKQV------ 330 (1866)
Q Consensus 262 ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~~v------ 330 (1866)
+...+... ....+.+.++.+.-+|+|||++.. ...+.+...+.. ...|..||+||.+..-
T Consensus 175 ~~~~~~~~---------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~ 245 (440)
T 2z4s_A 175 LVDSMKEG---------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_dssp HHHHHHTT---------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCC
T ss_pred HHHHHHcc---------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH
Confidence 33322211 112233344446779999999632 223333333211 1357789999876321
Q ss_pred ---hccCccceeeecCCCCHHHHHHHHHhhcCCCC-CCChhHHHHHHHHHHHhCCCc
Q 000202 331 ---LTNCEVDHIYQMKELVHADAHKLFTQCAFRGD-HLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 331 ---~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlP 383 (1866)
...+....++.+++++.++-.+++.+.+-... ..+ .+....|++.++|.+
T Consensus 246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~ 299 (440)
T 2z4s_A 246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNL 299 (440)
T ss_dssp HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCH
T ss_pred HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCH
Confidence 11122235788999999999888877652111 111 123556666666655
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.5e-05 Score=97.09 Aligned_cols=191 Identities=9% Similarity=0.114 Sum_probs=109.0
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc--cccceEEEEeeccccccccHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR--HFEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
....+++|++..++.+..++..+... .+.|+|.+|+||||+|+.+++.+.. .+...+.-.+... .... ....
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~~~--~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~---~~~~-~~~~ 107 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSANLP--HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD---ERGI-SIVR 107 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTTCC--CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS---CCCH-HHHT
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCCCC--EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc---ccch-HHHH
Confidence 34567999999999999999865322 2899999999999999999987542 1222221111111 0111 1122
Q ss_pred HHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccc-hhccC-cc
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQ-VLTNC-EV 336 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~ 336 (1866)
+.......... ..... ......-..++-+|++|+++. ......+...+.......++|++|.... +.... ..
T Consensus 108 ~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 108 EKVKNFARLTV-SKPSK---HDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp THHHHHHHSCC-CCCCT---THHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHhhhcc-cccch---hhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 22222111100 00000 000111123557999999874 4444555555444445677887775442 21111 11
Q ss_pred ceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce
Q 000202 337 DHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 337 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
...+++.+++.++..+.+...+...... -..+....|++.++|.|-.
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~ 230 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRR 230 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHH
Confidence 3478899999999999888765322211 1245678899999988764
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.00 E-value=2.1e-05 Score=95.96 Aligned_cols=193 Identities=11% Similarity=0.076 Sum_probs=103.7
Q ss_pred cccCCCceeehhhHHHHHHhh-hcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeec-------------
Q 000202 182 QSESKDLIGVEWRIKEIESLL-RTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVR------------- 247 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L-~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~------------- 247 (1866)
|....+++|.+..++.+..++ ..+. ... +.|+|..|+||||+|+.++..+...-.+.+++....
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 334567999999999999988 5432 233 899999999999999999985432222211111000
Q ss_pred -------cccccc---cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCC
Q 000202 248 -------AAEETG---RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRF 315 (1866)
Q Consensus 248 -------~~~~~~---~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~ 315 (1866)
...... ......++++..+.......... .+ ..+..++-++|||+++. ....+.+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQD-----SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccc-----cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 000000 00001122222221111000000 00 00234677999999974 44445555544444
Q ss_pred CCCCEEEEEccccc-hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhH-HHHHHHHHHHhCCCcc
Q 000202 316 ASGSQVIITTRDKQ-VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGY-TELAHKALKYAQGVPL 384 (1866)
Q Consensus 316 ~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~-~~~~~~i~~~~~GlPL 384 (1866)
..+..+|+||.+.. +.... .....+++++++.++..+.+...+-.... .-. .+.+..|++.++|.+-
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~l~~i~~~~~G~~r 231 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI--QLETKDILKRIAQASNGNLR 231 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--EECCSHHHHHHHHHHTTCHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHHcCCCHH
Confidence 55778888887643 22111 12367899999999999998876522111 111 2456778888888663
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.6e-05 Score=93.45 Aligned_cols=194 Identities=14% Similarity=0.162 Sum_probs=106.9
Q ss_pred cchhhhhhHHHHhhcccccccccCCCceeehhhHHHHHHhhhc----------CCCCcEEEEEEecCCCchhHHHHHHHH
Q 000202 162 ESRLVADIANEVLERLDDTFQSESKDLIGVEWRIKEIESLLRT----------GSAGVYKLGIWGIGGIGKTTIAGAVFN 231 (1866)
Q Consensus 162 e~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~~~~ 231 (1866)
++.+++.+..++..+. ++....+++|.+..++.|.+.+.. .....+.|.|+|.+|+|||+||+++++
T Consensus 63 ~~~~~~~i~~~i~~~~---~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHG---PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CHHHHHHHHHHTBCCS---CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred ChHHHHHHHhhcccCC---CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4555666666554433 333456799999999999887752 112356789999999999999999998
Q ss_pred hhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH---------
Q 000202 232 KISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP--------- 302 (1866)
Q Consensus 232 ~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--------- 302 (1866)
.....| +..+.... ......-.... ....+......++.+|+||+++..
T Consensus 140 ~~~~~~----~~i~~~~l--~~~~~g~~~~~----------------~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~ 197 (357)
T 3d8b_A 140 QSGATF----FSISASSL--TSKWVGEGEKM----------------VRALFAVARCQQPAVIFIDEIDSLLSQRGDGEH 197 (357)
T ss_dssp HTTCEE----EEEEGGGG--CCSSTTHHHHH----------------HHHHHHHHHHTCSEEEEEETHHHHTBC------
T ss_pred HcCCeE----EEEehHHh--hccccchHHHH----------------HHHHHHHHHhcCCeEEEEeCchhhhccCCCCcc
Confidence 763322 22211111 00000000000 001112222456789999999532
Q ss_pred ----HHHHHHhhccCC----CCCCCEEEEEccccchhcc-C--ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHH
Q 000202 303 ----RQIELLIGRLDR----FASGSQVIITTRDKQVLTN-C--EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTEL 371 (1866)
Q Consensus 303 ----~~~~~l~~~~~~----~~~gs~IiiTTR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~ 371 (1866)
.....++..+.. ...+..||.||.....+.. . .....+.++..+.++..+++...+-...... ..+.
T Consensus 198 ~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~ 275 (357)
T 3d8b_A 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL--SEEE 275 (357)
T ss_dssp CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC--CHHH
T ss_pred hHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc--cHHH
Confidence 122333332221 1234455656654322211 0 2235678899999998888876653221111 1345
Q ss_pred HHHHHHHhCCC
Q 000202 372 AHKALKYAQGV 382 (1866)
Q Consensus 372 ~~~i~~~~~Gl 382 (1866)
...+++.+.|.
T Consensus 276 l~~la~~t~G~ 286 (357)
T 3d8b_A 276 IEQIVQQSDAF 286 (357)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHcCCC
Confidence 67788888874
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=5.6e-07 Score=109.99 Aligned_cols=167 Identities=16% Similarity=0.116 Sum_probs=109.5
Q ss_pred CCcccEEEccCCcCCcccChhHHh-----cCCCCcEEEccCCCCCC--CChhhcCCCCCcEEecccccCcccCCccc---
Q 000202 1396 CPNLLTLFLQRNCRLRVIPPSFFE-----LMTSLKVLNLSKTRIKS--LPETLVNLKCLQILILRDCDFLFVLPPEV--- 1465 (1866)
Q Consensus 1396 ~~~L~~L~L~~~~~l~~~p~~~~~-----~l~~L~~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~~~~lP~~i--- 1465 (1866)
.++|+.|+|++|. +.......+. ..++|++|+|++|.+.. +..-...+.+|+.|+|++|.+...-...+
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4578899999874 4433322222 23689999999998863 22223356789999999998654333333
Q ss_pred --cCCCCCcEEEccCCCCCc-----CChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCC
Q 000202 1466 --GSLECLEVLDLRGTEIKM-----LPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHP 1538 (1866)
Q Consensus 1466 --~~L~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~ 1538 (1866)
...++|++|+|++|.++. ++..+..+++|++|+++++. +.......+ ...+...++|+.|+++.|.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L------~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELL------AAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHH------HHHGGGCSCCCEEECCSSC
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHH------HHHHhcCCCcCeEECCCCC
Confidence 246789999999998863 55667888899999887642 111000000 1235667789999998876
Q ss_pred CCCccccccccccccccCCCCCCEEEeecCCccch
Q 000202 1539 GDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECV 1573 (1866)
Q Consensus 1539 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 1573 (1866)
... .....+...+..+++|+.|++++|.+...
T Consensus 223 i~~---~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 223 AGD---TAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp CCH---HHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CCH---HHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 432 12234556677788899999999988754
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=97.95 E-value=4.2e-05 Score=91.57 Aligned_cols=176 Identities=16% Similarity=0.155 Sum_probs=99.3
Q ss_pred ccCCCceeehhhHHHHHHhhh----------cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccc
Q 000202 183 SESKDLIGVEWRIKEIESLLR----------TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEET 252 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~----------~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (1866)
..-.+++|.+..++.|.+.+. ......+-|.|+|.+|+|||+||+++++.....| +......
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~~~~---- 86 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSD---- 86 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEEHHH----
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEchHH----
Confidence 344679999999999988772 1222345689999999999999999998764332 1111111
Q ss_pred ccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-------------HHHHHHhhccC---CCC
Q 000202 253 GRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-------------RQIELLIGRLD---RFA 316 (1866)
Q Consensus 253 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~---~~~ 316 (1866)
+.....+. ...............++.+|+||+++.. .....++..+. ...
T Consensus 87 ---------l~~~~~g~-----~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 87 ---------LVSKWMGE-----SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp ---------HHTTTGGG-----HHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred ---------Hhhcccch-----HHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 11110000 0000111222223456789999999742 11233333222 223
Q ss_pred CCCEEEEEccccchhccC---ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 317 SGSQVIITTRDKQVLTNC---EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 317 ~gs~IiiTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
.+..||.||.....+... .....+.++..+.++-.++|..++....... .......+++.+.|.
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~l~~la~~t~g~ 219 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL--TKEDYRTLGAMTEGY 219 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC--CHHHHHHHHHTTTTC
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC--CHHHHHHHHHHcCCC
Confidence 455666677654332110 1245678889999999999988774322111 123456677777763
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.93 E-value=1.5e-05 Score=95.95 Aligned_cols=185 Identities=13% Similarity=0.058 Sum_probs=107.8
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCccccccc-ceEEEEEecCCCCHHHHHHHHHHHhccC
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMF-HVIIWVTVSRYWNTRKIQKQVLRQLSLH 1057 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 1057 (1866)
.+.|+++.++.+.+++.....+.+.++|++|+||||+|+.+++.-.-. .+ ...+.+..+....... .+..+..+...
T Consensus 26 ~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 103 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE-NWRHNFLELNASDERGINV-IREKVKEFART 103 (327)
T ss_dssp TCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGG-GHHHHEEEEETTCHHHHHT-THHHHHHHHHS
T ss_pred HhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCC-cccCceEEeeccccCchHH-HHHHHHHHHhh
Confidence 466777888888888876666668999999999999999996532111 11 1122333222111110 01111110000
Q ss_pred CCCccCHHHHHHHHHHHh-CCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCChhh-hccC-CCCcEEEecC
Q 000202 1058 CKDRETDAQVAEKLWQVL-NGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRELDV-CRNM-DVNMVVKLET 1132 (1866)
Q Consensus 1058 ~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~v-~~~~-~~~~~~~l~~ 1132 (1866)
..+ .+++.+||+||++.. ..++.+...+.....+.++|+||+...- .... .....+.+.+
T Consensus 104 ---------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~ 168 (327)
T 1iqp_A 104 ---------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRP 168 (327)
T ss_dssp ---------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCC
T ss_pred ---------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecC
Confidence 001 267889999999753 3444444333333456788888876432 1110 0124789999
Q ss_pred CChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 000202 1133 LSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALA 1181 (1866)
Q Consensus 1133 L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~ 1181 (1866)
++.++..+++.+.+......- -.+....|++.++|.|..+..+...+.
T Consensus 169 l~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 169 LRDEDIAKRLRYIAENEGLEL-TEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp CCHHHHHHHHHHHHHTTTCEE-CHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 999999999987764322111 134566788999999987665544443
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.93 E-value=4.9e-05 Score=89.09 Aligned_cols=164 Identities=10% Similarity=0.049 Sum_probs=95.0
Q ss_pred CceeehhhHHHHHHhhhcC--CCCcEEEEEEecCCCchhHHHHHHHHhhhccc-----cceEEEEeeccccccccHHHHH
Q 000202 187 DLIGVEWRIKEIESLLRTG--SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF-----EGSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~~--~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
.+.||+.+++++...|... ......+.|+|.+|+|||++|+++++++.... +...++..-.. .......+.
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~--~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL--ELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT--CCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc--ccCCHHHHH
Confidence 4899999999999888642 23456789999999999999999999775422 12223322211 122235566
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHh------hcCcEEEEEecCCCH---HHHHHHhhccCCCCCCCE--EEEEcccc
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRL------ARKKVLIVFDDVNHP---RQIELLIGRLDRFASGSQ--VIITTRDK 328 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L------~~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~--IiiTTR~~ 328 (1866)
..+..++.+... . .......+.+.+ .++++++|||+++.. +.+-.+... +. ...++ ||.++...
T Consensus 99 ~~I~~~L~g~~~-~--~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~-~~-~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 99 EKIWFAISKENL-C--GDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKW-IS-SKNSKLSIICVGGHN 173 (318)
T ss_dssp HHHHHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHH-HH-CSSCCEEEEEECCSS
T ss_pred HHHHHHhcCCCC-C--chHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhc-cc-ccCCcEEEEEEecCc
Confidence 677777754422 1 111122333322 456799999999853 333333321 11 12333 34444432
Q ss_pred chh---------ccCccceeeecCCCCHHHHHHHHHhhc
Q 000202 329 QVL---------TNCEVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 329 ~v~---------~~~~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
+.. ..++ ...+.+++++.+|-.+++..++
T Consensus 174 d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 174 VTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred ccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 221 1221 2468899999999999887655
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=6.5e-05 Score=87.14 Aligned_cols=176 Identities=16% Similarity=0.178 Sum_probs=94.0
Q ss_pred CCCceeehhhHHHHHHhhhc---C-------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 185 SKDLIGVEWRIKEIESLLRT---G-------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~---~-------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
..+++|.+..++.+.+++.. . ....+.|.|+|.+|+|||++|+++++.....| +....... ...
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~----~~~~~~~~--~~~ 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF----LAMAGAEF--VEV 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE----EEEETTTT--SSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE----EEechHHH--Hhh
Confidence 35788998888877765531 1 12345688999999999999999998764332 11111111 000
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-----------------HHHHHHhhccCCC--
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-----------------RQIELLIGRLDRF-- 315 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-----------------~~~~~l~~~~~~~-- 315 (1866)
..... .......+.......+.+|+||+++.. ..+..++..+...
T Consensus 79 ~~~~~----------------~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 79 IGGLG----------------AARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp STTHH----------------HHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred ccChh----------------HHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 00000 000011222223456789999999853 1233343333221
Q ss_pred CCCCEEEEEccccchhcc-C----ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 316 ASGSQVIITTRDKQVLTN-C----EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 316 ~~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
..+..||.||.....+.. . .....+.++..+.++-.+++...+.... ...........+++.+.|.+
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-~~~~~~~~~~~l~~~~~g~~ 214 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK-LTQSSTFYSQRLAELTPGFS 214 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT-CCBTHHHHHHHHHHTCTTCC
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC-CCcchhhHHHHHHHHCCCCC
Confidence 234566667755432211 1 1245778999999999999887653211 11111223456666666654
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.91 E-value=6.8e-05 Score=87.89 Aligned_cols=165 Identities=8% Similarity=0.046 Sum_probs=99.0
Q ss_pred cchhhHHHHHHHHHh----ccCCccEEEEEcCCCchHHHHHHHHhcCccccc------ccceEEEEEecCCCCHHHHHHH
Q 000202 980 VNYTQRNVRKIFRYV----NDVTASKIGVYGVGGIGKTAALKALISYPEVKV------MFHVIIWVTVSRYWNTRKIQKQ 1049 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~------~F~~~~wv~vs~~~~~~~~~~~ 1049 (1866)
..+|+++++++...+ .....+.+-|+|.+|+|||++++.|.+.-.... .| ..+.++.....+...+...
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHHH
Confidence 347888888887776 345667889999999999999999965432111 12 3456777777788899999
Q ss_pred HHHHhccCCCCccCHHHHHHHHHHHh---CCCcEEEEEeCCCCccchhhhcCCC--CCCCC-CcEEEEccCChhh-----
Q 000202 1050 VLRQLSLHCKDRETDAQVAEKLWQVL---NGEKFLLLLDDVWEQIDLEAVGIPV--PGSEN-GSKIFMASRELDV----- 1118 (1866)
Q Consensus 1050 i~~~l~~~~~~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~~~~l~~~l--~~~~~-gs~IivTTR~~~v----- 1118 (1866)
|++++...........+....+.+.+ .+++++||||+++...+-+.+...+ +.... ...||.++...+.
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L 180 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQI 180 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhc
Confidence 99999654322222222233333333 4578999999998643212111111 11111 1233334433222
Q ss_pred ----hccCCCCcEEEecCCChHHHHHHHHHHh
Q 000202 1119 ----CRNMDVNMVVKLETLSMKDAWELFCKEV 1146 (1866)
Q Consensus 1119 ----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 1146 (1866)
...++ ...+.+++++.++-.+++.+++
T Consensus 181 ~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 181 NIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred chhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 12222 2478999999999999998776
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.90 E-value=3e-05 Score=93.82 Aligned_cols=168 Identities=15% Similarity=0.217 Sum_probs=101.6
Q ss_pred cCCCceeehhhHHHHHHhhhcC---CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTG---SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~---~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
...+++|++..++.+..++... ......|.|+|.+|+|||+||++++++....| +..... .......
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~-----~~~~~~--~~~~~~~--- 96 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI-----KTTAAP--MIEKSGD--- 96 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE-----EEEEGG--GCCSHHH---
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe-----EEecch--hccchhH---
Confidence 4567999999999999888742 23345689999999999999999988764433 211111 0010011
Q ss_pred HHHHHHhccccccCccchhHHHHHHHh--hcCcEEEEEecCCC--HHHHHHHhhccCCCC------------------CC
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKRL--ARKKVLIVFDDVNH--PRQIELLIGRLDRFA------------------SG 318 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~------------------~g 318 (1866)
+...+ ..+..+|+||+++. ......+...+.... ++
T Consensus 97 ----------------------~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 97 ----------------------LAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp ----------------------HHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred ----------------------HHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 11111 23567899999974 344444443332211 12
Q ss_pred CEEEEEccccchhc-cC--ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce
Q 000202 319 SQVIITTRDKQVLT-NC--EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 319 s~IiiTTR~~~v~~-~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
.++|.||....... .. .....+++++++.++..+++...+-... ..-..+....+++.++|.|-.
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~ 222 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRI 222 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHH
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHH
Confidence 45666665432211 10 1236799999999999999887653211 112345677788888998843
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.87 E-value=2.8e-05 Score=99.42 Aligned_cols=185 Identities=16% Similarity=0.197 Sum_probs=100.2
Q ss_pred ccCCCceeehhhHHHHHHhhhcC---------------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeec
Q 000202 183 SESKDLIGVEWRIKEIESLLRTG---------------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVR 247 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~---------------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~ 247 (1866)
....+++|++..++++..++... ....+.+.|+|.+|+||||+|+++++... ++ .+.+ +..
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~i-n~s 111 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQ-NAS 111 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEE-CTT
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEE-eCC
Confidence 34567999999999999998741 01346899999999999999999999772 21 1111 111
Q ss_pred cccccccHHHHHHHHHHHHhccccccCccchhHHHH-HHHhhcCcEEEEEecCCCH-----HHHHHHhhccCCCCCCCEE
Q 000202 248 AAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQ-SKRLARKKVLIVFDDVNHP-----RQIELLIGRLDRFASGSQV 321 (1866)
Q Consensus 248 ~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l-~~~L~~k~~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~I 321 (1866)
. ... .......+........ ......... ......++.+||||+++.. ..+..+...+.. .+..|
T Consensus 112 ~---~~~-~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~i 182 (516)
T 1sxj_A 112 D---VRS-KTLLNAGVKNALDNMS---VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPL 182 (516)
T ss_dssp S---CCC-HHHHHHTGGGGTTBCC---STTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCE
T ss_pred C---cch-HHHHHHHHHHHhcccc---HHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCE
Confidence 1 111 1222222211111111 000000000 0012357889999999642 112333322221 23446
Q ss_pred EEEccccc---hhccCccceeeecCCCCHHHHHHHHHhhcCCCC-CCChhHHHHHHHHHHHhCCCc
Q 000202 322 IITTRDKQ---VLTNCEVDHIYQMKELVHADAHKLFTQCAFRGD-HLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 322 iiTTR~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlP 383 (1866)
|+++.+.. +.........+++++++.++..+.+...+.... ... .+....|++.++|.+
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~Gdi 245 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDI 245 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCH
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcH
Confidence 66554432 211112345789999999999988876653211 112 234677888888844
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=97.86 E-value=5.9e-05 Score=90.62 Aligned_cols=175 Identities=14% Similarity=0.153 Sum_probs=100.6
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....+++|.+..++.+..++..+. ...++.+.|.+|+|||++|+++++.....| +.+. ... .. ....++.
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~~---~~i~-~~~----~~-~~~i~~~ 92 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNADM---MFVN-GSD----CK-IDFVRGP 92 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEEE---EEEE-TTT----CC-HHHHHTH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCCE---EEEc-ccc----cC-HHHHHHH
Confidence 345789999999999999998543 345778889999999999999998774322 2222 111 11 1111222
Q ss_pred HHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH---HHHHHHhhccCCCCCCCEEEEEccccchhc-cC-ccc
Q 000202 263 LSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP---RQIELLIGRLDRFASGSQVIITTRDKQVLT-NC-EVD 337 (1866)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~-~~-~~~ 337 (1866)
+........ ..+++.+||+|+++.. +..+.+...+.....+.++|+||....-.. .. ...
T Consensus 93 ~~~~~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 93 LTNFASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHHHHHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HHHHHhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 211111100 1236789999999864 345555554443345678888887653211 11 113
Q ss_pred eeeecCCCCHHHHHHHHH-------hhcCCCC-CCChhHHHHHHHHHHHhCCCcc
Q 000202 338 HIYQMKELVHADAHKLFT-------QCAFRGD-HLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 338 ~~~~l~~L~~~ea~~Lf~-------~~a~~~~-~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
.++++++++.++-.+++. ..+.... ..++ .+....+++.++|.+-
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R 210 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFR 210 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTT
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHH
Confidence 578999999888433322 2111111 1111 2456667777777654
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00011 Score=86.95 Aligned_cols=179 Identities=16% Similarity=0.119 Sum_probs=97.4
Q ss_pred cccCCCceeehhhHHHHHHhhhcC----------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccc
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTG----------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEE 251 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~----------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (1866)
+....+++|.+..++.+.+.+... ....+.+.|+|.+|+||||+|+++++.....| +..+......
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~----~~i~~~~l~~ 92 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF----LNISAASLTS 92 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE----EEEESTTTSS
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe----EEeeHHHHhh
Confidence 344568999999999998877421 11345789999999999999999998764332 1111111000
Q ss_pred cccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-------------HHHHHHhhc---cCCC
Q 000202 252 TGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-------------RQIELLIGR---LDRF 315 (1866)
Q Consensus 252 ~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~---~~~~ 315 (1866)
. .. ..........+......++.+|+||+++.. .....++.. .+..
T Consensus 93 ~-----------------~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 154 (297)
T 3b9p_A 93 K-----------------YV-GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN 154 (297)
T ss_dssp S-----------------SC-SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--
T ss_pred c-----------------cc-chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc
Confidence 0 00 000000011122223456789999999642 111222222 1111
Q ss_pred --CCCCEEEEEccccchhccC---ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 316 --ASGSQVIITTRDKQVLTNC---EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 316 --~~gs~IiiTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
+.+..||.||.....+... .....+.++..+.++..+++...+-...... ..+....+++.+.|.+-
T Consensus 155 ~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~~~~la~~~~g~~~ 226 (297)
T 3b9p_A 155 PDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPL--DTEALRRLAKITDGYSG 226 (297)
T ss_dssp ----CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCS--CHHHHHHHHHHTTTCCH
T ss_pred CCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCH
Confidence 2345566677654322110 1235677888888888888876553221111 13456778888888764
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.81 E-value=7.9e-05 Score=92.60 Aligned_cols=173 Identities=18% Similarity=0.263 Sum_probs=98.9
Q ss_pred cccCCCceeehhhH---HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 182 QSESKDLIGVEWRI---KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l---~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
|.....+||.+..+ ..+...+..+. ...+.|+|.+|+||||||+.+++.....|. ..... ......
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~-----~l~a~---~~~~~~- 90 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANADVE-----RISAV---TSGVKE- 90 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEE-----EEETT---TCCHHH-
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeE-----EEEec---cCCHHH-
Confidence 34456899999888 77888887543 467899999999999999999997654432 11111 111111
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEE-Eccccch--hcc
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVII-TTRDKQV--LTN 333 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Iii-TTR~~~v--~~~ 333 (1866)
.++++... .......++.+|+||+++. ..+.+.|+..+.. + ...+|. ||.+... ...
T Consensus 91 ir~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 91 IREAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHHHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHH
T ss_pred HHHHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHH
Confidence 11111110 1111245788999999975 3344455554443 2 233443 5555421 111
Q ss_pred -CccceeeecCCCCHHHHHHHHHhhcCCCC-----CCChhHHHHHHHHHHHhCCCc
Q 000202 334 -CEVDHIYQMKELVHADAHKLFTQCAFRGD-----HLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 334 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-----~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.....++.+++++.++..+++.+.+-... ....-..+....+++.++|.+
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~ 208 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDA 208 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCH
Confidence 12245788999999999998877653210 111123455667777777754
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00027 Score=84.24 Aligned_cols=175 Identities=14% Similarity=0.075 Sum_probs=94.2
Q ss_pred CCCceeehhhHHHHHHhhhc----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 185 SKDLIGVEWRIKEIESLLRT----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
-.+++|.+...+.|.+.+.. .....+.|.|+|.+|+|||+||+++++.... .-|+...... ...
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~~-l~~- 84 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSD-LVS- 84 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECCS-SCC-
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhHH-HHh-
Confidence 45788888888888776531 1123467899999999999999999987621 1222211110 000
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-------------HHHHHHhhccCC---CCCC
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-------------RQIELLIGRLDR---FASG 318 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~---~~~g 318 (1866)
... .................++.+|+||+++.. .....++..+.. ...+
T Consensus 85 --------------~~~-g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 85 --------------KWL-GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp --------------SSC-CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred --------------hhh-hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 000 000000111122223457789999999753 122333333222 2334
Q ss_pred CEEEEEccccchhccC---ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 319 SQVIITTRDKQVLTNC---EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 319 s~IiiTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
..||.||.....+... .....+.++..+.++-.+++..+.-...... .......+++.+.|.
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~ 214 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL--TEADFRELGRKTDGY 214 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTC
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCC
Confidence 4555566544322110 2245678888898888888887663221111 123456677777665
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00017 Score=88.29 Aligned_cols=192 Identities=13% Similarity=0.083 Sum_probs=102.0
Q ss_pred CCCceeehhhHHHH---HHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeec-c-ccccccHHHHH
Q 000202 185 SKDLIGVEWRIKEI---ESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVR-A-AEETGRLDDLR 259 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l---~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~-~-~~~~~~~~~l~ 259 (1866)
..+|||++..++.+ ...+..+....+.+.|+|.+|+|||++|+++++......+ |+.... . ...........
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTP---FTAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCC---EEEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCC---cccccchhhhhcccchhHHH
Confidence 56899999997764 4444444333468999999999999999999998754322 222111 1 00111112233
Q ss_pred HHHHHHHhccc--------------------c----------ccCccchhHHHHHHH-----hhcC----cEEEEEecCC
Q 000202 260 KELLSKLLNDR--------------------N----------VKNFQNISVNFQSKR-----LARK----KVLIVFDDVN 300 (1866)
Q Consensus 260 ~~ll~~~~~~~--------------------~----------~~~~~~~~~~~l~~~-----L~~k----~~LlVlDdv~ 300 (1866)
.+.+....+.. . ...........+.+. ..++ +.+|+||+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 33322211100 0 000000001111111 1223 3599999997
Q ss_pred C--HHHHHHHhhccCCCCCCCEEEEEccc-----------------cchhccCccceeeecCCCCHHHHHHHHHhhcCCC
Q 000202 301 H--PRQIELLIGRLDRFASGSQVIITTRD-----------------KQVLTNCEVDHIYQMKELVHADAHKLFTQCAFRG 361 (1866)
Q Consensus 301 ~--~~~~~~l~~~~~~~~~gs~IiiTTR~-----------------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 361 (1866)
. .+....+...+...... .++++|.. +.+.. ....+.+++++.++..+++...+-..
T Consensus 200 ~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHHHHHHHHHHc
Confidence 4 45556666555443333 34444431 11111 12457999999999999998765322
Q ss_pred CCCChhHHHHHHHHHHHhC-CCcce
Q 000202 362 DHLDAGYTELAHKALKYAQ-GVPLA 385 (1866)
Q Consensus 362 ~~~~~~~~~~~~~i~~~~~-GlPLA 385 (1866)
.. .-..+....+++.+. |.|-.
T Consensus 276 ~~--~~~~~~l~~l~~~~~~G~~r~ 298 (368)
T 3uk6_A 276 DV--EMSEDAYTVLTRIGLETSLRY 298 (368)
T ss_dssp TC--CBCHHHHHHHHHHHHHSCHHH
T ss_pred CC--CCCHHHHHHHHHHhcCCCHHH
Confidence 11 122456777888887 66643
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00012 Score=90.18 Aligned_cols=123 Identities=11% Similarity=0.140 Sum_probs=57.0
Q ss_pred cccccCcEEEccCCCCCCCCC-CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcE
Q 000202 1372 EEWTHAKMIFFMDNDLQTLPG-RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQI 1449 (1866)
Q Consensus 1372 ~~~~~l~~l~l~~~~l~~l~~-~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~ 1449 (1866)
..+.+|+.+.+..|.+..++. ...+.+|+.+.|..+ +..++...|.++++|+.++|..+ ++.++. .+.+ .+|+.
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT 252 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred hCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence 344455555555555554442 112455555555422 44555555555555555555542 344432 2223 45555
Q ss_pred EecccccCcccCCccccCCCCCcEEEccCCCCC-----cCCh-hhcCCCccceecc
Q 000202 1450 LILRDCDFLFVLPPEVGSLECLEVLDLRGTEIK-----MLPK-EIGKLTSLRYLTV 1499 (1866)
Q Consensus 1450 L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~-----~lp~-~i~~L~~L~~L~l 1499 (1866)
+.|.+ .+...-+..|.++.+|+.+++.++.+. .++. .+..+++|+.+.+
T Consensus 253 i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 253 VKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp EEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred EEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 55532 222222334555555555555554433 2322 2455555555544
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=6.9e-05 Score=87.45 Aligned_cols=169 Identities=12% Similarity=0.091 Sum_probs=89.8
Q ss_pred CceeehhhHHHHHH-------hhhc-CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 187 DLIGVEWRIKEIES-------LLRT-GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~-------~L~~-~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
.++|....++++.. .+.. .....+.+.|+|.+|+|||+||+++++.....| +.+...... ........
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~-~g~~~~~~ 109 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKM-IGFSETAK 109 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGC-TTCCHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHh-cCCchHHH
Confidence 56777666555544 3321 233567899999999999999999998743322 111111100 00000000
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH------------HHHHHHhhccCC---CCCCCEEEE
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP------------RQIELLIGRLDR---FASGSQVII 323 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~------------~~~~~l~~~~~~---~~~gs~Iii 323 (1866)
.. .....+......+..+|+||+++.. ..++.+...+.. .+....||.
T Consensus 110 ~~-----------------~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ 172 (272)
T 1d2n_A 110 CQ-----------------AMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIG 172 (272)
T ss_dssp HH-----------------HHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEE
T ss_pred HH-----------------HHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEE
Confidence 00 0011222223456789999998642 223444333322 223344666
Q ss_pred Eccccchhcc---Cc-cceeeecCCCCH-HHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 324 TTRDKQVLTN---CE-VDHIYQMKELVH-ADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 324 TTR~~~v~~~---~~-~~~~~~l~~L~~-~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
||.....+.. .+ ....+++++++. ++-.+++.... ... .+....+++.+.|.+
T Consensus 173 ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~~~---~~~~~~l~~~~~g~~ 230 (272)
T 1d2n_A 173 TTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----NFK---DKERTTIAQQVKGKK 230 (272)
T ss_dssp EESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----CSC---HHHHHHHHHHHTTSE
T ss_pred ecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----CCC---HHHHHHHHHHhcCCC
Confidence 7776644332 11 145688999988 55555554421 111 345778888888865
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00097 Score=82.34 Aligned_cols=58 Identities=19% Similarity=0.327 Sum_probs=35.0
Q ss_pred CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEecc
Q 000202 1393 RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILR 1453 (1866)
Q Consensus 1393 ~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~ 1453 (1866)
+.+|.+|+.+.+.. .+..++...|.++.+|+.++|..+ ++.++ ..+.++.+|+.+.+.
T Consensus 67 F~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp TTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred hhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 45667777777753 366666666677777777777543 44444 345555666655443
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=6e-05 Score=90.52 Aligned_cols=174 Identities=16% Similarity=0.158 Sum_probs=91.0
Q ss_pred CCCce-eehhh--HHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHH
Q 000202 185 SKDLI-GVEWR--IKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKE 261 (1866)
Q Consensus 185 ~~~~v-Gr~~~--l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1866)
.++|| |.... ...+..+...+......+.|+|.+|+||||||+++++.....-...+++. . ..+...
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~---------~~~~~~ 79 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-A---------DDFAQA 79 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-H---------HHHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-H---------HHHHHH
Confidence 45676 54333 23445555443323457899999999999999999997654311223332 1 112222
Q ss_pred HHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----HHHHHHhhccCC-CCCCCEEEEEccccch------
Q 000202 262 LLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----RQIELLIGRLDR-FASGSQVIITTRDKQV------ 330 (1866)
Q Consensus 262 ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~~v------ 330 (1866)
+...+... ........+. +..+|+|||++.. ...+.+...+.. ...|.+||+||.+..-
T Consensus 80 ~~~~~~~~---------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 80 MVEHLKKG---------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHHHHT---------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHHHcC---------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 22222111 0111222232 3678999999642 222223222211 1346688888864321
Q ss_pred ---hccCccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 331 ---LTNCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 331 ---~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
...+....++++++ +.++-.+++...+...... -..+....+++++ |.
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~--l~~~~l~~l~~~~-g~ 200 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENT-KN 200 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHC-SS
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhC-CC
Confidence 11112225688999 9999999888766321111 1134455666666 54
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00027 Score=88.27 Aligned_cols=177 Identities=16% Similarity=0.137 Sum_probs=100.5
Q ss_pred ccCCCceeehhhHHHHHHhhhc----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccc
Q 000202 183 SESKDLIGVEWRIKEIESLLRT----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEET 252 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (1866)
....+++|.+...+.|.+.+.. .....+.|.|+|.+|+|||+||+++++... ..-|+.....
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~----~~~~~~v~~~---- 202 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSS---- 202 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC----SSEEEEECCC----
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC----CCCEEEEeHH----
Confidence 3456799999999988877631 112346789999999999999999998762 1122221111
Q ss_pred ccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-------------HHHHHHhhccCCC---C
Q 000202 253 GRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-------------RQIELLIGRLDRF---A 316 (1866)
Q Consensus 253 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~---~ 316 (1866)
.+. ....+. ...............++.+|+||+++.. .....++..+... .
T Consensus 203 ----~l~----~~~~g~-----~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 203 ----DLV----SKWLGE-----SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp ----------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred ----HHH----hhhcch-----HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 011 111111 1111112222233457889999999853 2334455444332 3
Q ss_pred CCCEEEEEccccchhccC---ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 317 SGSQVIITTRDKQVLTNC---EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 317 ~gs~IiiTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
.+..||.||.....+... .....+.++..+.++..++|..++..... .-.......|++.+.|.
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~ 336 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN--SLTEADFQELGRKTDGY 336 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE--ECCHHHHHHHHHHTTTC
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCC
Confidence 456677677654322110 22356788888888888888877632211 11123456777777774
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00021 Score=86.56 Aligned_cols=175 Identities=16% Similarity=0.144 Sum_probs=96.1
Q ss_pred cCCCceeehhhHHHHHHhhhc----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccc
Q 000202 184 ESKDLIGVEWRIKEIESLLRT----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETG 253 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (1866)
...+++|.+..++.|.+.+.. .....+-|.|+|.+|+|||+||+++++.....| +......
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~----~~v~~~~----- 119 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSD----- 119 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE----EEEEHHH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEeeHHH-----
Confidence 446799999999988887631 112234588999999999999999999764332 1111111
Q ss_pred cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCHH-------------HHHHHhhccC---CCCC
Q 000202 254 RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPR-------------QIELLIGRLD---RFAS 317 (1866)
Q Consensus 254 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-------------~~~~l~~~~~---~~~~ 317 (1866)
+ .....+ ................++.+|+||+++... ....++..+. ....
T Consensus 120 ----l----~~~~~g-----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 120 ----L----VSKWMG-----ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp ----H----HSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred ----H----hhhhcc-----hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 1 100000 000001112222234578899999997421 1233333222 1133
Q ss_pred CCEEEEEccccchhcc-C--ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 318 GSQVIITTRDKQVLTN-C--EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 318 gs~IiiTTR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
+..||.||.....+.. . .....+.++..+.++-.+++..+........ .......|++.+.|.
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~--~~~~l~~la~~t~G~ 252 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL--TKEDYRTLGAMTEGY 252 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC--CHHHHHHHHHHTTTC
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHcCCC
Confidence 5556666654432211 0 2345678899999999999887763322111 133456677777774
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00028 Score=84.71 Aligned_cols=177 Identities=13% Similarity=0.133 Sum_probs=98.8
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhcc---
Q 000202 193 WRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLND--- 269 (1866)
Q Consensus 193 ~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~--- 269 (1866)
...+.+...+..+. -.+.+.++|..|+|||++|+.+++.+........ ..+ .... ....+......+
T Consensus 9 ~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~-----~~c---~~c~-~c~~~~~~~~~d~~~ 78 (334)
T 1a5t_A 9 PDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGH-----KSC---GHCR-GCQLMQAGTHPDYYT 78 (334)
T ss_dssp HHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTT-----BCC---SCSH-HHHHHHHTCCTTEEE
T ss_pred HHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCC-----CCC---CCCH-HHHHHhcCCCCCEEE
Confidence 34555666665432 3457899999999999999999986643321000 000 0000 000000000000
Q ss_pred cccc-CccchhHH---HHHHHh-----hcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccc-hhccC-cc
Q 000202 270 RNVK-NFQNISVN---FQSKRL-----ARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQ-VLTNC-EV 336 (1866)
Q Consensus 270 ~~~~-~~~~~~~~---~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~ 336 (1866)
-... .......+ .+.+.+ .+++-++|+|+++. .+..+.++..+....+++.+|++|.+.+ +.... ..
T Consensus 79 ~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SR 158 (334)
T 1a5t_A 79 LAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSR 158 (334)
T ss_dssp ECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred EeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhc
Confidence 0000 00001111 111121 34678899999984 5566777777666566778887776653 22211 22
Q ss_pred ceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCccee
Q 000202 337 DHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLAL 386 (1866)
Q Consensus 337 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl 386 (1866)
...+++++++.++..+.+.... ... .+.+..+++.++|.|..+
T Consensus 159 c~~~~~~~~~~~~~~~~L~~~~----~~~---~~~~~~l~~~s~G~~r~a 201 (334)
T 1a5t_A 159 CRLHYLAPPPEQYAVTWLSREV----TMS---QDALLAALRLSAGSPGAA 201 (334)
T ss_dssp SEEEECCCCCHHHHHHHHHHHC----CCC---HHHHHHHHHHTTTCHHHH
T ss_pred ceeeeCCCCCHHHHHHHHHHhc----CCC---HHHHHHHHHHcCCCHHHH
Confidence 4578999999999999988765 111 345677889999988644
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00015 Score=86.83 Aligned_cols=181 Identities=11% Similarity=0.015 Sum_probs=107.1
Q ss_pred cccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccc-eEEEEEecCCCCHHHHHHHHHHHhcc
Q 000202 978 TAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFH-VIIWVTVSRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~ 1056 (1866)
..+.|+++.++.+.+++.....+.+.++|.+|+|||++|+.+++.-. ...+. ..+.++.+.......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~----------- 84 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDV----------- 84 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTTT-----------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChHH-----------
Confidence 34667788888888888766655689999999999999999955311 11111 122333332111110
Q ss_pred CCCCccCHHHHHHHHHHH--h-CCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCChh-hhcc-CCCCcEEE
Q 000202 1057 HCKDRETDAQVAEKLWQV--L-NGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRELD-VCRN-MDVNMVVK 1129 (1866)
Q Consensus 1057 ~~~~~~~~~~~~~~l~~~--L-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~-~~~~~~~~ 1129 (1866)
..+........ + .+++.+||+|+++.. ...+.+...+.....+.++|+||.... +... ......+.
T Consensus 85 -------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~ 157 (319)
T 2chq_A 85 -------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (319)
T ss_dssp -------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEE
T ss_pred -------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEE
Confidence 01111111111 1 256889999999753 344555555544445677888876544 2111 11124899
Q ss_pred ecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHH
Q 000202 1130 LETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAK 1178 (1866)
Q Consensus 1130 l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~ 1178 (1866)
+.+++.++..+++.+.+......- -.+....++..++|.+..+.....
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~i-~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 158 FKPVPKEAMKKRLLEICEKEGVKI-TEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCCCB-CHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999987764322111 133456788899999876554433
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00024 Score=87.45 Aligned_cols=177 Identities=15% Similarity=0.109 Sum_probs=96.3
Q ss_pred ccCCCceeehhhHHHHHHhhhc----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccc
Q 000202 183 SESKDLIGVEWRIKEIESLLRT----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEET 252 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (1866)
....+++|.+..++.|...+.. .....+.|.|+|.+|+|||+||++++++....| +..+.... .
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~----~~v~~~~l--~ 185 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF----FNISAASL--T 185 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE----EEECSCCC---
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE----EEeeHHHh--h
Confidence 3456899999999999988731 011245789999999999999999988754332 22211110 0
Q ss_pred ccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-------------HHHHHHhhccC----CC
Q 000202 253 GRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-------------RQIELLIGRLD----RF 315 (1866)
Q Consensus 253 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~----~~ 315 (1866)
. .. .+ .........+.......+.+|+||+++.. .....++..+. ..
T Consensus 186 ~---~~--------~g-----~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 186 S---KY--------VG-----EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp ----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred c---cc--------cc-----hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 0 00 00 00000011122222445679999999642 11222222221 11
Q ss_pred CCCCEEEEEccccchhcc-C--ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 316 ASGSQVIITTRDKQVLTN-C--EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 316 ~~gs~IiiTTR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.....||.||.....+.. . .....+.++..+.++..+++...+-...... ..+....+++.+.|..
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~~~~la~~~~g~~ 318 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL--TQKELAQLARMTDGYS 318 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS--CHHHHHHHHHHTTTCC
T ss_pred CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCC
Confidence 223455556654322211 0 1234678999999999999987663322111 2345677888888854
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.69 E-value=6.8e-05 Score=81.73 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=41.7
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
....++||+.+++.+.+.+... ..+.+.|+|.+|+|||+||+++++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3467999999999999998753 3456789999999999999999987644
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00024 Score=85.86 Aligned_cols=179 Identities=12% Similarity=0.187 Sum_probs=101.5
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc-ccceEEEEeeccccccccHHHHHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....++|.+..++.|...+..+. ...+.++|.+|+||||+|+.+++.+... +... +... .. ........+ ++.
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~-~~~~-~~-~~~~~~~~i-r~~ 96 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNM-VLEL-NA-SDDRGIDVV-RNQ 96 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHH-EEEE-CT-TSCCSHHHH-HTH
T ss_pred cHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccce-EEEE-cC-cccccHHHH-HHH
Confidence 34568899988999998888653 2228999999999999999999875432 2111 1111 10 000111111 111
Q ss_pred HHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccc-hhccC-ccce
Q 000202 263 LSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQ-VLTNC-EVDH 338 (1866)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~ 338 (1866)
......... ...+.+-++|+|+++. ....+.+...+.......++|++|.... +.... ....
T Consensus 97 i~~~~~~~~--------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 97 IKDFASTRQ--------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 (340)
T ss_dssp HHHHHHBCC--------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHhhcc--------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence 111110000 0123467899999963 4455555555444455677877775442 11111 1134
Q ss_pred eeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 339 IYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 339 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
.+++.+++.++..+.+...+-.... .-..+....+++.++|.+-
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~--~i~~~~~~~i~~~s~G~~r 206 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIANVLVHEKL--KLSPNAEKALIELSNGDMR 206 (340)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTC--CBCHHHHHHHHHHHTTCHH
T ss_pred eEeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 7889999999988887765421111 1123456778888888764
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0005 Score=81.26 Aligned_cols=152 Identities=16% Similarity=0.218 Sum_probs=89.7
Q ss_pred CCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccc
Q 000202 185 SKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETG 253 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (1866)
..+++|.+..+++|.+.+.. +-...+.|.|+|.+|+|||+||+++++.....| +....
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~-----i~v~~------ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF-----ISIKG------ 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE-----EEECH------
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE-----EEEEh------
Confidence 45689999988888877642 123456789999999999999999998764322 22111
Q ss_pred cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCHH----------------HHHHHhhccCCC--
Q 000202 254 RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPR----------------QIELLIGRLDRF-- 315 (1866)
Q Consensus 254 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~-- 315 (1866)
..+. ....+.. .......+.......+.+|+||+++... ....++..+...
T Consensus 83 --~~l~----~~~~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 --PELL----TMWFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp --HHHH----HHHHTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred --HHHH----hhhcCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 1122 2222211 1111223333345578999999997421 123333333211
Q ss_pred CCCCEEEEEccccchhcc-C----ccceeeecCCCCHHHHHHHHHhhc
Q 000202 316 ASGSQVIITTRDKQVLTN-C----EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 316 ~~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
..+..||.||.....+.. . .....+.++..+.++-.+++....
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHH
Confidence 234567777765533221 1 224578899999999888887665
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=9.5e-05 Score=88.13 Aligned_cols=149 Identities=15% Similarity=0.165 Sum_probs=89.6
Q ss_pred CceeehhhHHHHHHhhhcC-------------CCCcEEEEEEecCCCchhHHHHHHHHhhhcccc--ceEEEEeeccccc
Q 000202 187 DLIGVEWRIKEIESLLRTG-------------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFE--GSYFACNVRAAEE 251 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~~-------------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~ 251 (1866)
.++|.+..++.+.+++... ......+.|+|.+|+|||++|+++++.+..... ..-++...... .
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD-L 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG-T
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH-h
Confidence 5889998888888765421 234557899999999999999999986644221 11222221110 0
Q ss_pred cccHHHHHHHHHHHHhccccccCccchhHHHHHHHh-hcCcEEEEEecCC-----------CHHHHHHHhhccCCCCCCC
Q 000202 252 TGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRL-ARKKVLIVFDDVN-----------HPRQIELLIGRLDRFASGS 319 (1866)
Q Consensus 252 ~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~-----------~~~~~~~l~~~~~~~~~gs 319 (1866)
.. .........+...+ ..+..+|+||+++ +......+...+.....+.
T Consensus 111 ~~--------------------~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 170 (309)
T 3syl_A 111 VG--------------------QYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDL 170 (309)
T ss_dssp CC--------------------SSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTC
T ss_pred hh--------------------hcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCE
Confidence 00 00000001111111 1134699999997 4555666666655555677
Q ss_pred EEEEEccccc----------hhccCccceeeecCCCCHHHHHHHHHhhc
Q 000202 320 QVIITTRDKQ----------VLTNCEVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 320 ~IiiTTR~~~----------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
.||.||.... +... ....+++++++.++-.+++...+
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 171 VVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp EEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHH
Confidence 8888885432 2222 23678999999999999887665
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.62 E-value=1.8e-05 Score=83.79 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=39.1
Q ss_pred ccccccEEeEecCccCccccchhhhhh----ccccceeeeccccccceecccCccccccccCCCCcCEEeccCCccccc
Q 000202 1715 SFAELRILSIHACRHLEYVFTCSMIQF----LAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELAN 1789 (1866)
Q Consensus 1715 ~~p~L~~L~I~~C~~L~~l~~~~~l~~----L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~ 1789 (1866)
.+++|++|++++|+++++-.. ..+.. .++|++|+|++|++++.--. ..+..+|+|++|+|++||.++.
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl------~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGI------IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHH------HHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHH------HHHhcCCCCCEEECCCCCCCCc
Confidence 356677777777776665321 11222 23577777777766643211 1133567777777777776654
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.61 E-value=2.9e-05 Score=82.16 Aligned_cols=90 Identities=11% Similarity=0.013 Sum_probs=40.6
Q ss_pred CCcEEEecccCCccEeccCCCccccccccccccccccccccccccccccccc--ccccccEEeEecCccCccccchhhhh
Q 000202 1663 GLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEG--SFAELRILSIHACRHLEYVFTCSMIQ 1740 (1866)
Q Consensus 1663 ~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~--~~p~L~~L~I~~C~~L~~l~~~~~l~ 1740 (1866)
.|+.|++++|. ++..+-. ....+++|+.|++++|..+++.....+... ..++|++|+|++|+++++... ..+.
T Consensus 62 ~L~~LDLs~~~-Itd~GL~---~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFD---HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALH 136 (176)
T ss_dssp CEEEEEEESCC-CCGGGGG---GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGG
T ss_pred eEeEEeCcCCC-ccHHHHH---HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHh
Confidence 45555555554 3332211 123455555555555555544221111111 123555555555555554321 2234
Q ss_pred hccccceeeeccccccc
Q 000202 1741 FLAKLEELTVEYCLAVK 1757 (1866)
Q Consensus 1741 ~L~sLe~L~I~~C~~L~ 1757 (1866)
++++|++|+|++|+.++
T Consensus 137 ~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GCTTCCEEEEESCTTCC
T ss_pred cCCCCCEEECCCCCCCC
Confidence 45555555555555554
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.002 Score=79.42 Aligned_cols=122 Identities=16% Similarity=0.194 Sum_probs=82.6
Q ss_pred ccccccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCC
Q 000202 1371 EEEWTHAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCL 1447 (1866)
Q Consensus 1371 ~~~~~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L 1447 (1866)
+..+.+|+.+.+.. .+..++ .+.+|.+|+.+.+..+ +..++...|..+..|+.+.+..+ +..+. ..+.+...+
T Consensus 67 F~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred hhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 55667888888864 466665 4678999999999754 77888888899999988777544 33333 345555444
Q ss_pred cEEecccccCcccCCccccCCCCCcEEEccCCCCCcCCh-hhcCCCccceecc
Q 000202 1448 QILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTV 1499 (1866)
Q Consensus 1448 ~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l 1499 (1866)
..........+ -...+.++.+|+.+.+..+ +..++. .+..+.+|+.+.+
T Consensus 143 ~~~~~~~~~~i--~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l 192 (394)
T 4fs7_A 143 EITIPEGVTVI--GDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKL 192 (394)
T ss_dssp EEECCTTCCEE--CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred ccccCcccccc--chhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEc
Confidence 44444333322 2346788899999998754 445544 3677888888766
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.56 E-value=8.7e-05 Score=77.22 Aligned_cols=47 Identities=23% Similarity=0.193 Sum_probs=36.5
Q ss_pred CceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 187 DLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
++||++..++++.+.+..-......|.|+|.+|+|||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999988876422233457899999999999999998854
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.51 E-value=8.2e-05 Score=81.53 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=37.4
Q ss_pred cccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhc
Q 000202 978 TAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
..+.|++++++++.+.+.....+.+.|+|.+|+|||+||+.+++
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHH
Confidence 34678888999999998776667789999999999999999965
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00035 Score=86.99 Aligned_cols=178 Identities=16% Similarity=0.126 Sum_probs=101.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCccccccc--ceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMF--HVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLN 1076 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 1076 (1866)
...+.|+|.+|+||||||+.+++.. ...+ ..+++++.. .+..++...+... . ...+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l--~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~----~~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV--VQNEPDLRVMYITSE------KFLNDLVDSMKEG-----K----LNEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH--HHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----C----HHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----c----HHHHHHHhc
Confidence 5678899999999999999996532 2222 123455433 3344444444321 1 122334444
Q ss_pred CCcEEEEEeCCCCcc----chhhhcCCCCC-CCCCcEEEEccCChh---------hhccCCCCcEEEecCCChHHHHHHH
Q 000202 1077 GEKFLLLLDDVWEQI----DLEAVGIPVPG-SENGSKIFMASRELD---------VCRNMDVNMVVKLETLSMKDAWELF 1142 (1866)
Q Consensus 1077 ~kr~LlVlDdv~~~~----~~~~l~~~l~~-~~~gs~IivTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~Lf 1142 (1866)
.+..+|+|||++... .-+.+...+.. ...|..||+||.... +...+....++.+++++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 466799999997532 12222221110 134678888887631 2222333357899999999999999
Q ss_pred HHHhc--CCCCCchHHHHHHHHHHHcCCChHHHHHHHHHh------hC-CCCHHHHHHHhhhC
Q 000202 1143 CKEVG--GIIQSPDIHLYARAIVKGCCGLPLLTIVTAKAL------AG-ERNVSVWKHASRKF 1196 (1866)
Q Consensus 1143 ~~~~~--~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L------~~-~~~~~~w~~~~~~~ 1196 (1866)
.+.+. +...++ +....|++.++|.+-.+.-+...+ .+ .-+.+.++.++...
T Consensus 273 ~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 273 RKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTT
T ss_pred HHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 87764 222222 235568888999886443322211 12 24566777776543
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00033 Score=85.91 Aligned_cols=192 Identities=9% Similarity=0.036 Sum_probs=103.1
Q ss_pred ccchhhHHHHHHHHHhccCC-ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHh---
Q 000202 979 AVNYTQRNVRKIFRYVNDVT-ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQL--- 1054 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l--- 1054 (1866)
.+.|+++.++.+.+.+.... ...+.|+|..|+||||+|+.+.+.......+. ..++........+...-
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 89 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIEQGRFVD 89 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHHTSCCSS
T ss_pred hccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHhccCCCc
Confidence 46678888888888875544 35688999999999999999864321111100 00000000011111000
Q ss_pred ----ccC-CCCccCHHHHHHHHHHH-hCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCChhh-hcc-CCC
Q 000202 1055 ----SLH-CKDRETDAQVAEKLWQV-LNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRELDV-CRN-MDV 1124 (1866)
Q Consensus 1055 ----~~~-~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~~v-~~~-~~~ 1124 (1866)
... ........++...+... ..+++.+||+||++. ...++.+...+.....+..+|++|.+..- ... ...
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr 169 (373)
T 1jr3_A 90 LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 (373)
T ss_dssp CEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTT
T ss_pred eEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhh
Confidence 000 00111222222211110 135678999999975 23344444333323345677777764432 111 112
Q ss_pred CcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHH
Q 000202 1125 NMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAK 1178 (1866)
Q Consensus 1125 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~ 1178 (1866)
...+++.+++.++..+++.+.+....... -.+....|++.++|.|..+..+..
T Consensus 170 ~~~i~~~~l~~~~~~~~l~~~~~~~~~~~-~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 170 CLQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred eeEeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 36889999999999999987653211111 123466789999999987765543
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00054 Score=82.16 Aligned_cols=171 Identities=19% Similarity=0.229 Sum_probs=98.8
Q ss_pred cCCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccc
Q 000202 184 ESKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEET 252 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (1866)
.-.++.|.+...++|.+.+.. +-...+-|.++|++|+|||.||++++++....| +.....+....
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk 221 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQK 221 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhcc
Confidence 345788999999888876542 233456789999999999999999999765543 22222111000
Q ss_pred c--cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccCC
Q 000202 253 G--RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLDR 314 (1866)
Q Consensus 253 ~--~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~ 314 (1866)
. ......+++ ....-...+++|++|+++.. ..+..++..+..
T Consensus 222 ~vGese~~vr~l--------------------F~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 281 (405)
T 4b4t_J 222 YIGEGSRMVREL--------------------FVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG 281 (405)
T ss_dssp STTHHHHHHHHH--------------------HHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHH--------------------HHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhc
Confidence 0 001111111 12223457899999999741 123344444433
Q ss_pred CC--CCCEEEEEccccchhcc-----CccceeeecCCCCHHHHHHHHHhhcCCCCC-CChhHHHHHHHHHHHhCCC
Q 000202 315 FA--SGSQVIITTRDKQVLTN-----CEVDHIYQMKELVHADAHKLFTQCAFRGDH-LDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 315 ~~--~gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~Gl 382 (1866)
+. .+..||.||...+.+.. -..+..++++..+.++-.++|..+.-+... ...+ ...+++.+.|.
T Consensus 282 ~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~ 353 (405)
T 4b4t_J 282 FETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGC 353 (405)
T ss_dssp TTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSC
T ss_pred cCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCC
Confidence 32 34455667765544321 123578889999999999999876532211 1112 34556666663
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0012 Score=80.79 Aligned_cols=151 Identities=18% Similarity=0.269 Sum_probs=91.7
Q ss_pred cCCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccc
Q 000202 184 ESKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEET 252 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (1866)
.-.++.|.+..+++|.+.+.. +-...+-|.++|++|+|||.||+++++.....| +.....+....
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~sk 254 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVDK 254 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCCS
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhccc
Confidence 345788999999888876542 233467899999999999999999999765443 22222211000
Q ss_pred c--cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccCC
Q 000202 253 G--RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLDR 314 (1866)
Q Consensus 253 ~--~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~ 314 (1866)
. ......+ ......-...+++|++|+++.. ..+..++..+..
T Consensus 255 ~~Gese~~ir--------------------~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 314 (437)
T 4b4t_L 255 YIGESARIIR--------------------EMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG 314 (437)
T ss_dssp SSSHHHHHHH--------------------HHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHH--------------------HHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc
Confidence 0 0011111 1112223567899999999731 123344444332
Q ss_pred C--CCCCEEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhc
Q 000202 315 F--ASGSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 315 ~--~~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
+ ..+..||.||...+.+... ..+..++++..+.++-.++|..+.
T Consensus 315 ~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 365 (437)
T 4b4t_L 315 FDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHT 365 (437)
T ss_dssp SSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHh
Confidence 2 2355677787665543321 135678899999998888888665
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0019 Score=74.71 Aligned_cols=153 Identities=13% Similarity=0.198 Sum_probs=81.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+.|.++|.+|+|||++|+.+++.. .. ..+.+..+.-.+. ............+.......
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~--~~---~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~a~~~~ 98 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA--QV---PFLAMAGAEFVEV---------------IGGLGAARVRSLFKEARARA 98 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH--TC---CEEEEETTTTSSS---------------STTHHHHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEechHHHHhh---------------ccChhHHHHHHHHHHHHhcC
Confidence 3457899999999999999996532 11 1233443321110 00001112222233333456
Q ss_pred cEEEEEeCCCCc-------------cc----hhhhcCCCCC--CCCCcEEEEccCChhhh-----ccCCCCcEEEecCCC
Q 000202 1079 KFLLLLDDVWEQ-------------ID----LEAVGIPVPG--SENGSKIFMASRELDVC-----RNMDVNMVVKLETLS 1134 (1866)
Q Consensus 1079 r~LlVlDdv~~~-------------~~----~~~l~~~l~~--~~~gs~IivTTR~~~v~-----~~~~~~~~~~l~~L~ 1134 (1866)
..+|+||+++.. .. +..+...+.. ...+..||.||...... +....+..+.++..+
T Consensus 99 ~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~ 178 (262)
T 2qz4_A 99 PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPT 178 (262)
T ss_dssp SEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCC
T ss_pred CeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcC
Confidence 799999999753 00 1112111111 12345666677654421 111234678899999
Q ss_pred hHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1135 MKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1135 ~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
.++-.+++...+...............+++.+.|.+-
T Consensus 179 ~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 179 LQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp HHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCH
T ss_pred HHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCH
Confidence 9999999987764333222233334678888888754
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.39 E-value=5.4e-05 Score=86.54 Aligned_cols=166 Identities=10% Similarity=0.009 Sum_probs=92.4
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCH
Q 000202 985 RNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETD 1064 (1866)
Q Consensus 985 ~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~ 1064 (1866)
..++.+..+......+.+.|+|.+|+||||||+.+++... .....+.|+.++...+. +..
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~--~~~~~~~~~~~~~~~~~------~~~------------ 97 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN--ELERRSFYIPLGIHASI------STA------------ 97 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGGGGGS------CGG------------
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEHHHHHHH------HHH------------
Confidence 4455555555444567899999999999999999965322 22234556665432110 000
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCcc--c--hhhhcCCCCC-CCCC-cEEEEccCChh---------hhccCCCCcEEE
Q 000202 1065 AQVAEKLWQVLNGEKFLLLLDDVWEQI--D--LEAVGIPVPG-SENG-SKIFMASRELD---------VCRNMDVNMVVK 1129 (1866)
Q Consensus 1065 ~~~~~~l~~~L~~kr~LlVlDdv~~~~--~--~~~l~~~l~~-~~~g-s~IivTTR~~~---------v~~~~~~~~~~~ 1129 (1866)
..+.+ .+..+||+||++... . .+.+...+.. ...+ .++|+||+... +...+.....+.
T Consensus 98 ------~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~ 170 (242)
T 3bos_A 98 ------LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQ 170 (242)
T ss_dssp ------GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEE
T ss_pred ------HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEE
Confidence 00011 345689999997531 1 2222221110 0122 24777776432 111111226899
Q ss_pred ecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHH
Q 000202 1130 LETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAK 1178 (1866)
Q Consensus 1130 l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~ 1178 (1866)
+.+++.++..+++.+.+...... --.+....+++.++|.+-.+..+..
T Consensus 171 l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 171 LQPMMDDEKLAALQRRAAMRGLQ-LPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCCCCGGGHHHHHHHHHHHTTCC-CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHccCCHHHHHHHHH
Confidence 99999999999998776422111 1134566788899998866654433
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00042 Score=84.57 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=91.1
Q ss_pred ccCCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccc
Q 000202 183 SESKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEE 251 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (1866)
..-.++.|.+...++|.+.+.. +-...+-|.++|++|+|||.||++++++....| +.........
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~~ 253 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQLVQ 253 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCS
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhhhh
Confidence 3446889999999888775421 223467899999999999999999999765443 2222222100
Q ss_pred cc--cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccC
Q 000202 252 TG--RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLD 313 (1866)
Q Consensus 252 ~~--~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~ 313 (1866)
.. ......+.+ ....-...+++|++|+++.. ..+..++..+.
T Consensus 254 ~~vGese~~ir~l--------------------F~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ld 313 (434)
T 4b4t_M 254 MYIGEGAKLVRDA--------------------FALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLD 313 (434)
T ss_dssp SCSSHHHHHHHHH--------------------HHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHH--------------------HHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhh
Confidence 00 001111111 11122456899999998631 11334444444
Q ss_pred CCCC--CCEEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhc
Q 000202 314 RFAS--GSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 314 ~~~~--gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
.+.. +.-||.||...+.+... ..+..++++..+.++-.++|..+.
T Consensus 314 g~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 365 (434)
T 4b4t_M 314 GFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHS 365 (434)
T ss_dssp TSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHh
Confidence 3332 44566677766544321 235678899999998888887654
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00087 Score=78.65 Aligned_cols=166 Identities=16% Similarity=0.147 Sum_probs=88.8
Q ss_pred cchhhHHHHHHHHHhcc-------------CCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHH
Q 000202 980 VNYTQRNVRKIFRYVND-------------VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKI 1046 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 1046 (1866)
+.|.++.++++.+.+.. .....+.|+|.+|+|||+||+.+++.. .. ..+.+..+.-.+
T Consensus 19 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~--~~---~~~~v~~~~~~~---- 89 (285)
T 3h4m_A 19 IGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET--NA---TFIRVVGSELVK---- 89 (285)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT--TC---EEEEEEGGGGCC----
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CC---CEEEEehHHHHH----
Confidence 44555555555555421 344568899999999999999996532 11 122233221110
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc----------------cchhhhcCCCC--CCCCCcE
Q 000202 1047 QKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ----------------IDLEAVGIPVP--GSENGSK 1108 (1866)
Q Consensus 1047 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~----------------~~~~~l~~~l~--~~~~gs~ 1108 (1866)
.. ...........+......+..+|+||+++.. ..+..+...+. ....+..
T Consensus 90 ----------~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 158 (285)
T 3h4m_A 90 ----------KF-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVK 158 (285)
T ss_dssp ----------CS-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEE
T ss_pred ----------hc-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEE
Confidence 00 0001111222223333456789999999642 01111111111 1223566
Q ss_pred EEEccCChhhhc-----cCCCCcEEEecCCChHHHHHHHHHHhcCCCC--CchHHHHHHHHHHHcCCC
Q 000202 1109 IFMASRELDVCR-----NMDVNMVVKLETLSMKDAWELFCKEVGGIIQ--SPDIHLYARAIVKGCCGL 1169 (1866)
Q Consensus 1109 IivTTR~~~v~~-----~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~--~~~~~~~~~~I~~~c~Gl 1169 (1866)
||.||....... .......+.+...+.++..++|...+..... ..++ ..++..+.|.
T Consensus 159 vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~----~~l~~~~~g~ 222 (285)
T 3h4m_A 159 IIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNL----EEIAKMTEGC 222 (285)
T ss_dssp EEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHHCTTC
T ss_pred EEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCH----HHHHHHcCCC
Confidence 777877543321 1123457899999999999999887754322 2223 4466667764
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00052 Score=86.15 Aligned_cols=152 Identities=18% Similarity=0.185 Sum_probs=87.9
Q ss_pred CCceeehhhHHHHHHhhhcC-----------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 186 KDLIGVEWRIKEIESLLRTG-----------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~-----------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
.+++|.+..+++|.+++... ....+-|.|+|.+|+|||++|++++++....| +..+...
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f----v~vn~~~------ 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPE------ 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE----EEEEHHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE----EEEEchH------
Confidence 46999999999998887532 23455689999999999999999988763322 2221111
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-------------HHHHHHhhccCC--CCCCC
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-------------RQIELLIGRLDR--FASGS 319 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~--~~~gs 319 (1866)
+. ..+.+ .........+.....+++.+|+||+++.. .....|+..+.. ...+.
T Consensus 274 ---l~----~~~~g-----~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 274 ---IM----SKLAG-----ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp ---HH----TSCTT-----HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred ---hh----hhhcc-----hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 10 00000 00000112233334567789999999411 122333333221 12344
Q ss_pred EEEEEccccchhc-c----CccceeeecCCCCHHHHHHHHHhhcC
Q 000202 320 QVIITTRDKQVLT-N----CEVDHIYQMKELVHADAHKLFTQCAF 359 (1866)
Q Consensus 320 ~IiiTTR~~~v~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~a~ 359 (1866)
+||.||....-+. . ......+.++..+.++-.++|..++-
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~ 386 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTT
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHh
Confidence 5666666443211 1 12245688999999999999987763
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.33 E-value=8e-05 Score=90.02 Aligned_cols=57 Identities=21% Similarity=0.110 Sum_probs=28.0
Q ss_pred hcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCcccc--CCCCCcEEEcc
Q 000202 1419 ELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVG--SLECLEVLDLR 1477 (1866)
Q Consensus 1419 ~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~--~L~~L~~L~l~ 1477 (1866)
..+++|+.|+|++|.-..+|. + .+++|+.|+|..|.+.......++ .+++|++|+|+
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred hcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 445666666666553223333 2 255666666665543222112222 45666666654
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0013 Score=81.81 Aligned_cols=175 Identities=15% Similarity=0.129 Sum_probs=96.2
Q ss_pred ccccchhhHHH---HHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC-CCHHHHHHHHHH
Q 000202 977 VTAVNYTQRNV---RKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY-WNTRKIQKQVLR 1052 (1866)
Q Consensus 977 ~~~~~~~~~~~---~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~ 1052 (1866)
+..++|.+..+ ..+...+.....+.+.+||.+|+||||||+.+.+.. ...| +.++-. .....+ +.+..
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~--~~~f-----~~l~a~~~~~~~i-r~~~~ 96 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA--NADV-----ERISAVTSGVKEI-REAIE 96 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT--TCEE-----EEEETTTCCHHHH-HHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh--CCCe-----EEEEeccCCHHHH-HHHHH
Confidence 33455665555 556666666666789999999999999999996532 2222 222211 222222 11111
Q ss_pred HhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEE-ccCChh--hhc-cCCCCc
Q 000202 1053 QLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFM-ASRELD--VCR-NMDVNM 1126 (1866)
Q Consensus 1053 ~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TTR~~~--v~~-~~~~~~ 1126 (1866)
.. ......+++.+|+||++... ...+.+...+.. + ...+|. ||.+.. +.. ...-..
T Consensus 97 ~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR~~ 158 (447)
T 3pvs_A 97 RA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSRAR 158 (447)
T ss_dssp HH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTTEE
T ss_pred HH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCcee
Confidence 11 01112567899999999863 333333333322 1 223333 444432 111 111224
Q ss_pred EEEecCCChHHHHHHHHHHhcCCC-----CCc-hHHHHHHHHHHHcCCChHHHHHHH
Q 000202 1127 VVKLETLSMKDAWELFCKEVGGII-----QSP-DIHLYARAIVKGCCGLPLLTIVTA 1177 (1866)
Q Consensus 1127 ~~~l~~L~~~~a~~Lf~~~~~~~~-----~~~-~~~~~~~~I~~~c~GlPLAi~~~g 1177 (1866)
++.+++++.++...++.+.+.... ... --.+....|++.++|.+-.+..+-
T Consensus 159 v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 159 VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 789999999999999988764311 111 123456678888999886554433
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00013 Score=88.14 Aligned_cols=102 Identities=21% Similarity=0.255 Sum_probs=45.6
Q ss_pred CCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCC-CChhhc--CCCCCcEEecccc--cC-----cccCCcc
Q 000202 1395 SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKS-LPETLV--NLKCLQILILRDC--DF-----LFVLPPE 1464 (1866)
Q Consensus 1395 ~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~-lp~~i~--~L~~L~~L~L~~~--~~-----~~~lP~~ 1464 (1866)
.+++|+.|.|++|..+ .++. + . +++|+.|+|..|.+.. ....++ .+++|++|+|+.+ .. ...+...
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~-~-~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGK-K-P-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCS-C-B-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred cCCCCcEEEEeCCCCc-eecc-c-c-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 3455666666554222 2222 1 2 4566666666555431 112232 4566666665421 10 0011111
Q ss_pred c--cCCCCCcEEEccCCCCCc-CChhh---cCCCccceeccc
Q 000202 1465 V--GSLECLEVLDLRGTEIKM-LPKEI---GKLTSLRYLTVF 1500 (1866)
Q Consensus 1465 i--~~L~~L~~L~l~~~~i~~-lp~~i---~~L~~L~~L~l~ 1500 (1866)
+ +.+++|++|+|++|.+.. .+..+ ..+++|++|+++
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence 1 235666666666665541 11122 235566666664
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0014 Score=79.69 Aligned_cols=169 Identities=17% Similarity=0.193 Sum_probs=96.8
Q ss_pred CCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccc-
Q 000202 186 KDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETG- 253 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~- 253 (1866)
.++.|.+...++|.+.+.. +-...+-|.++|++|+|||.||++++++....| +.....+.....
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~v 284 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKYV 284 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhcccC
Confidence 5788999999888875431 234567899999999999999999999875543 222111110000
Q ss_pred -cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccCCCC
Q 000202 254 -RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLDRFA 316 (1866)
Q Consensus 254 -~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~~ 316 (1866)
......+ ......-...+++|++|+++.. ..+..++..+..+.
T Consensus 285 Gesek~ir--------------------~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 285 GEGARMVR--------------------ELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp SHHHHHHH--------------------HHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHH--------------------HHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 0011111 1122223567899999999741 11223333333222
Q ss_pred --CCCEEEEEccccchhcc----C-ccceeeecCCCCHHHHHHHHHhhcCCCC-CCChhHHHHHHHHHHHhCCC
Q 000202 317 --SGSQVIITTRDKQVLTN----C-EVDHIYQMKELVHADAHKLFTQCAFRGD-HLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 317 --~gs~IiiTTR~~~v~~~----~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~Gl 382 (1866)
.+..||.||...+.+.. - ..+..++++..+.++-.++|..+.-+-. ....+ ...+++.+.|.
T Consensus 345 ~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 345 PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNS 414 (467)
T ss_dssp CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSC
T ss_pred CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCC
Confidence 23345667755543321 1 2367889999999999999987663221 11112 34466666664
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0015 Score=78.47 Aligned_cols=151 Identities=21% Similarity=0.255 Sum_probs=89.7
Q ss_pred cCCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccc
Q 000202 184 ESKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEET 252 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (1866)
.-.++.|.+...++|.+.+.. +-...+-|.++|++|+|||.||++++++....| +.....+....
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk 255 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQK 255 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCS
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhc
Confidence 345788999999888875531 223467799999999999999999999865543 22222221000
Q ss_pred c--cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccCC
Q 000202 253 G--RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLDR 314 (1866)
Q Consensus 253 ~--~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~ 314 (1866)
. ......+.+ ....-...+++|++|+++.. ..+..++..+..
T Consensus 256 ~vGesek~ir~l--------------------F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 256 YLGDGPRLCRQI--------------------FKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp SSSHHHHHHHHH--------------------HHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHH--------------------HHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 0 001111111 11222456899999998631 123334333332
Q ss_pred C--CCCCEEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhc
Q 000202 315 F--ASGSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 315 ~--~~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
+ ..+..||.||...+.+... ..+..++++..+.++-.++|..+.
T Consensus 316 ~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l 366 (437)
T 4b4t_I 316 FDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHT 366 (437)
T ss_dssp CCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHh
Confidence 2 2344566677655544322 235678899999999889998766
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0007 Score=92.07 Aligned_cols=51 Identities=22% Similarity=0.338 Sum_probs=42.1
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
.....+|||+.++..+...|.... ...+.|+|.+|+||||||+.+++++..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 345679999999999999987543 234789999999999999999997643
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0011 Score=83.47 Aligned_cols=149 Identities=14% Similarity=0.125 Sum_probs=83.3
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc-----cceEEEE-eeccccccccHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF-----EGSYFAC-NVRAAEETGRLD 256 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~~~~-~~~~~~~~~~~~ 256 (1866)
.....+|||+.+++.+...|.... ..-+.|+|.+|+|||+||+.+++.+...+ ...-++. +..
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--------- 245 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------- 245 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---------
Confidence 345679999999999999997533 23467999999999999999999864432 1111221 100
Q ss_pred HHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccch------
Q 000202 257 DLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQV------ 330 (1866)
Q Consensus 257 ~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v------ 330 (1866)
.... ..........+...-..++.+|++| -..+....+...+. ....++|.+|.....
T Consensus 246 -------~~~~-----g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 -------TKYR-----GEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred -------cccc-----chHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence 0000 0111111223333334567899999 22233333444433 223566666654431
Q ss_pred hccC-ccceeeecCCCCHHHHHHHHHhhc
Q 000202 331 LTNC-EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 331 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
.... ....++.+++++.++..+++...+
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1100 123468999999999999998654
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00079 Score=81.81 Aligned_cols=193 Identities=11% Similarity=0.038 Sum_probs=104.4
Q ss_pred cccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccc-eEEEEEecCCCCHHHHHHHHHHHhcc
Q 000202 978 TAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFH-VIIWVTVSRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~ 1056 (1866)
..+.|+++.++.+..++.....+.+.++|.+|+||||+|+.+.+.......+. ....+..+.......+ ++....+..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 115 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKNFAR 115 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHHHhh
Confidence 34567777788888888766545588999999999999999965321111111 1223333332233222 222222211
Q ss_pred CCC-CccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCChh-hhccC-CCCcEEEec
Q 000202 1057 HCK-DRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRELD-VCRNM-DVNMVVKLE 1131 (1866)
Q Consensus 1057 ~~~-~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~ 1131 (1866)
... ..... .....-.++.-+|++|++... ...+.+...+.......++|++|.... +.... .....+.+.
T Consensus 116 ~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~ 190 (353)
T 1sxj_D 116 LTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFK 190 (353)
T ss_dssp SCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECC
T ss_pred hcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeC
Confidence 100 00000 000011245679999998652 223333332222234567777765433 21111 012478999
Q ss_pred CCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 000202 1132 TLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTA 1177 (1866)
Q Consensus 1132 ~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g 1177 (1866)
+++.++....+.+.+......- -.+....|++.++|.|-.+..+.
T Consensus 191 ~~~~~~~~~~l~~~~~~~~~~i-~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQENVKC-DDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHTSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999887764322111 13456778999999997655443
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0017 Score=71.71 Aligned_cols=59 Identities=22% Similarity=0.222 Sum_probs=39.4
Q ss_pred CCCceeehh----hHHHHHHhhhcCCCC--cEEEEEEecCCCchhHHHHHHHHhhhccccceEEE
Q 000202 185 SKDLIGVEW----RIKEIESLLRTGSAG--VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 243 (1866)
Q Consensus 185 ~~~~vGr~~----~l~~l~~~L~~~~~~--~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (1866)
.++|++.+. .++.+.+++...... .+.+.|+|.+|+|||+||+++++.........+|+
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 456776543 344455555543222 26789999999999999999999776554445554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00035 Score=79.86 Aligned_cols=79 Identities=25% Similarity=0.246 Sum_probs=59.2
Q ss_pred hcCCCCcEEEccCCCCCCCC---hhhcCCCCCcEEecccccCcccCCccccCCC--CCcEEEccCCCCC-cCCh------
Q 000202 1419 ELMTSLKVLNLSKTRIKSLP---ETLVNLKCLQILILRDCDFLFVLPPEVGSLE--CLEVLDLRGTEIK-MLPK------ 1486 (1866)
Q Consensus 1419 ~~l~~L~~L~Ls~~~i~~lp---~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~--~L~~L~l~~~~i~-~lp~------ 1486 (1866)
.++++|+.|+|++|.|+.++ ..+..+++|++|+|++|.+.+. ..+..+. +|++|+|++|.+. .+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 56889999999999988654 6677899999999999986543 3455555 8999999999886 3442
Q ss_pred -hhcCCCccceecc
Q 000202 1487 -EIGKLTSLRYLTV 1499 (1866)
Q Consensus 1487 -~i~~L~~L~~L~l 1499 (1866)
.+..+++|+.|+-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 2566777777764
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00074 Score=73.09 Aligned_cols=49 Identities=20% Similarity=0.180 Sum_probs=32.5
Q ss_pred CCcee----ehhhHHHHHHhhhcCC-CCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 186 KDLIG----VEWRIKEIESLLRTGS-AGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 186 ~~~vG----r~~~l~~l~~~L~~~~-~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
++|++ ....++.+.+++..-. .....++|+|.+|+||||||+++++...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 10 DTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44554 3333444444443211 1246799999999999999999999765
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0014 Score=77.00 Aligned_cols=146 Identities=9% Similarity=0.050 Sum_probs=90.2
Q ss_pred eehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhh---ccccceEEEEeeccccccccHHHHHHHHHHHH
Q 000202 190 GVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS---RHFEGSYFACNVRAAEETGRLDDLRKELLSKL 266 (1866)
Q Consensus 190 Gr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 266 (1866)
|-+..++.+...+..+. .....++|.+|+||||+|+.+++... ..++....+...+ .... .+-.+++....
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~~~~-id~ir~li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---ENIG-IDDIRTIKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SCBC-HHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---CCCC-HHHHHHHHHHH
Confidence 34566777888887654 56888999999999999999987521 1123333332111 0111 11122333332
Q ss_pred hccccccCccchhHHHHHHHhhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEcccc-chhccCccceeeecC
Q 000202 267 LNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDK-QVLTNCEVDHIYQMK 343 (1866)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~l~ 343 (1866)
.... ..+++-++|+|+++ +....+.++..+....+.+.+|++|.+. .+....... +++++
T Consensus 75 ~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~ 137 (305)
T 2gno_A 75 NYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVV 137 (305)
T ss_dssp TSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEE
T ss_pred hhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCC
Confidence 2111 12456788999997 4566777777776666788888877554 333333334 89999
Q ss_pred CCCHHHHHHHHHhhc
Q 000202 344 ELVHADAHKLFTQCA 358 (1866)
Q Consensus 344 ~L~~~ea~~Lf~~~a 358 (1866)
+++.++..+.+....
T Consensus 138 ~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 138 VNVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999998887665
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00087 Score=81.74 Aligned_cols=52 Identities=25% Similarity=0.312 Sum_probs=41.2
Q ss_pred CCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 185 SKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
-.+..|.+...++|.+.+.. +-...+-|.++|++|+|||+||+++++.....
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45788999999888776541 33446779999999999999999999976544
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0013 Score=78.40 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=38.9
Q ss_pred CCceeehhhHHHHHHhhhcC-------CCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 186 KDLIGVEWRIKEIESLLRTG-------SAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~-------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
..++|.+..++.+...+... ......+.++|.+|+|||++|+.+++....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 35789988888888777642 112457999999999999999999996644
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.03 Score=68.78 Aligned_cols=103 Identities=15% Similarity=0.126 Sum_probs=59.5
Q ss_pred CCCCC-cccEEEccCCcCCcccChhHHhcCCCCcEEEccCCC---CCCCC-hhhcCCCCCcEEecccccCcccCCccccC
Q 000202 1393 RPSCP-NLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTR---IKSLP-ETLVNLKCLQILILRDCDFLFVLPPEVGS 1467 (1866)
Q Consensus 1393 ~~~~~-~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~---i~~lp-~~i~~L~~L~~L~L~~~~~~~~lP~~i~~ 1467 (1866)
+.+|. .|+.+.+.. .+..+....|.++.+|+.+.+..+. ++.++ ..+..+.+|+.+.+..+ ....-...+..
T Consensus 59 F~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred ccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 34453 467777753 3667777777777778777776653 44554 34556666776665443 12222234566
Q ss_pred CCCCcEEEccCCCCCcCCh-hhcCCCccceecc
Q 000202 1468 LECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTV 1499 (1866)
Q Consensus 1468 L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l 1499 (1866)
+.+|+.+.+..+ +..++. .+..+.+|+.+.+
T Consensus 136 c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~ 167 (394)
T 4gt6_A 136 CEELDTVTIPEG-VTSVADGMFSYCYSLHTVTL 167 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEC
T ss_pred hcccccccccce-eeeecccceecccccccccc
Confidence 777777777543 333432 3556666666655
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00023 Score=77.51 Aligned_cols=82 Identities=20% Similarity=0.113 Sum_probs=44.9
Q ss_pred hcCCCCcEEEccCCCCC-----CCChhhcCCCCCcEEecccccCccc----CCccccCCCCCcEEEc--cCCCCCc----
Q 000202 1419 ELMTSLKVLNLSKTRIK-----SLPETLVNLKCLQILILRDCDFLFV----LPPEVGSLECLEVLDL--RGTEIKM---- 1483 (1866)
Q Consensus 1419 ~~l~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~----lP~~i~~L~~L~~L~l--~~~~i~~---- 1483 (1866)
...++|++|+|++|.|. .+...+...++|++|+|++|.+... +...+...++|++|+| ++|.|..
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 33456666666666665 2334455556666666666654322 3344555566666666 5566552
Q ss_pred -CChhhcCCCccceeccc
Q 000202 1484 -LPKEIGKLTSLRYLTVF 1500 (1866)
Q Consensus 1484 -lp~~i~~L~~L~~L~l~ 1500 (1866)
+...+...++|++|++.
T Consensus 142 ~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp HHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHhCCCcCEEecc
Confidence 33334444556666554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00046 Score=78.87 Aligned_cols=79 Identities=30% Similarity=0.277 Sum_probs=53.7
Q ss_pred CCcccEEEccCCcCCcccC--hhHHhcCCCCcEEEccCCCCCCCChhhcCCC--CCcEEecccccCcccCCc-------c
Q 000202 1396 CPNLLTLFLQRNCRLRVIP--PSFFELMTSLKVLNLSKTRIKSLPETLVNLK--CLQILILRDCDFLFVLPP-------E 1464 (1866)
Q Consensus 1396 ~~~L~~L~L~~~~~l~~~p--~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~--~L~~L~L~~~~~~~~lP~-------~ 1464 (1866)
+++|+.|+|++|. +..++ +..++.+++|++|+|++|.|..+ ..+..+. +|++|+|++|.+.+.+|. .
T Consensus 169 l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3445555555542 33222 12346789999999999998876 3355555 899999999998776763 3
Q ss_pred ccCCCCCcEEEc
Q 000202 1465 VGSLECLEVLDL 1476 (1866)
Q Consensus 1465 i~~L~~L~~L~l 1476 (1866)
+..+++|+.||-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 678899998873
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0013 Score=79.96 Aligned_cols=193 Identities=11% Similarity=0.079 Sum_probs=96.1
Q ss_pred ccchhhHHHHHHHHHh-ccCCccEEEEEcCCCchHHHHHHHHhcC--ccccc--ccce--------------------EE
Q 000202 979 AVNYTQRNVRKIFRYV-NDVTASKIGVYGVGGIGKTAALKALISY--PEVKV--MFHV--------------------II 1033 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l-~~~~~~vi~I~G~gGvGKTtLa~~v~~~--~~~~~--~F~~--------------------~~ 1033 (1866)
.+.|.+..++.+.+++ .....+.+.|+|..|+||||+|+.+... ....+ .++. .+
T Consensus 15 ~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHL 94 (354)
T ss_dssp GCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEE
T ss_pred HhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceE
Confidence 4566777777777777 5555445899999999999999988551 10000 0110 11
Q ss_pred EEEecCC-CCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEE
Q 000202 1034 WVTVSRY-WNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIF 1110 (1866)
Q Consensus 1034 wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Ii 1110 (1866)
.+..+.. .......++++..+.....- .... .+. .+.++.-++|||++..- ...+.+...+.....+..+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~I 168 (354)
T 1sxj_E 95 EITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLI 168 (354)
T ss_dssp EECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEE
T ss_pred EecHhhcCCcchHHHHHHHHHHHHhccc----cccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEE
Confidence 1111110 00000122222222111000 0000 000 02346679999999862 22233332222122456777
Q ss_pred EccCChh-hhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 000202 1111 MASRELD-VCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTA 1177 (1866)
Q Consensus 1111 vTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g 1177 (1866)
++|.+.. +.... .-...+++++++.++..+.+.+.+......-+-.+....|++.++|.+-.+..+.
T Consensus 169 l~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 169 MVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 7776532 21111 1126789999999999999887663211100002345668888999886554443
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0019 Score=74.38 Aligned_cols=51 Identities=22% Similarity=0.204 Sum_probs=37.2
Q ss_pred cCCCceeehhhHHHHHHhhhc---C-------CCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 184 ESKDLIGVEWRIKEIESLLRT---G-------SAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~---~-------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
...+++|.+..++++.+.+.. . ....+-+.|+|.+|+||||||+++++...
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 345788988888777665431 0 11234588999999999999999998764
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0013 Score=78.19 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=37.7
Q ss_pred CCceeehhhHHHHHHhhhc------------CCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 186 KDLIGVEWRIKEIESLLRT------------GSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~------------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..++|.+..++.+...+.. .......+.|+|.+|+|||++|+++++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999888888877653 011234688999999999999999998763
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.019 Score=68.14 Aligned_cols=157 Identities=13% Similarity=0.091 Sum_probs=84.3
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+-|.++|++|+|||+||+++++... .. ..+.+..+.-.+ .. .......+...+...-..+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~~--------------~~-~g~~~~~~~~lf~~a~~~~ 105 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLVS--------------KW-LGESEKLVKNLFQLARENK 105 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSCC--------------SS-CCSCHHHHHHHHHHHHHTS
T ss_pred CceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHHh--------------hh-hhHHHHHHHHHHHHHHhcC
Confidence 35688999999999999999965321 11 122333332110 00 0111222222222223467
Q ss_pred cEEEEEeCCCCcc--------c-----hhhhcCC---CCCCCCCcEEEEccCChhh-----hccCCCCcEEEecCCChHH
Q 000202 1079 KFLLLLDDVWEQI--------D-----LEAVGIP---VPGSENGSKIFMASRELDV-----CRNMDVNMVVKLETLSMKD 1137 (1866)
Q Consensus 1079 r~LlVlDdv~~~~--------~-----~~~l~~~---l~~~~~gs~IivTTR~~~v-----~~~~~~~~~~~l~~L~~~~ 1137 (1866)
..+|+||+++... . ...+... +.....+-.||.||..... .+ ..+..+.+...+.++
T Consensus 106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~ 183 (322)
T 1xwi_A 106 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHA 183 (322)
T ss_dssp SEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHH
T ss_pred CcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHH
Confidence 8999999997530 0 0111111 1111234455556654432 22 334678899999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh-HHHHHHH
Q 000202 1138 AWELFCKEVGGIIQSPDIHLYARAIVKGCCGLP-LLTIVTA 1177 (1866)
Q Consensus 1138 a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP-LAi~~~g 1177 (1866)
-.+++..++........ ......|++.+.|.. -.|..+.
T Consensus 184 r~~il~~~l~~~~~~l~-~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 184 RAAMFKLHLGTTQNSLT-EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp HHHHHHHHHTTCCBCCC-HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCC-HHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999887754332111 234566888888874 3344443
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00029 Score=73.02 Aligned_cols=49 Identities=16% Similarity=0.111 Sum_probs=35.0
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
-.++|++..++++.+.+..-......|.|+|.+|+|||++|+++++...
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3689999999988888763222233588999999999999999887543
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0026 Score=85.61 Aligned_cols=156 Identities=14% Similarity=0.128 Sum_probs=86.0
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc------ccceEEEEeeccccccccHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH------FEGSYFACNVRAAEETGRLDD 257 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~ 257 (1866)
....++||+.+++.+.+.|.... ..-+.|+|.+|+|||++|+.+++++... ....+|..+.....
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~------- 254 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL------- 254 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------
T ss_pred CCCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh-------
Confidence 44679999999999999987543 3457899999999999999999876432 12223322111100
Q ss_pred HHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------HHHHHHhhccCCCCCCCEEEEEccc
Q 000202 258 LRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------RQIELLIGRLDRFASGSQVIITTRD 327 (1866)
Q Consensus 258 l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~IiiTTR~ 327 (1866)
.+..............+......++.+|++|+++.. .+...++..+.. ..+.++|.+|..
T Consensus 255 ---------~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~ 324 (758)
T 1r6b_X 255 ---------AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTY 324 (758)
T ss_dssp ---------CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECH
T ss_pred ---------ccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCc
Confidence 000000000000111222222345789999999743 222223322222 234566666654
Q ss_pred cchhcc------C-ccceeeecCCCCHHHHHHHHHhhc
Q 000202 328 KQVLTN------C-EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 328 ~~v~~~------~-~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
...... . .....+.++.++.++..+++....
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 321110 1 122468899999999888886543
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0009 Score=77.57 Aligned_cols=49 Identities=22% Similarity=0.150 Sum_probs=35.1
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+++|.+..+.++.+.+..-......|.|+|.+|+|||++|+++++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4689999999888776653222234688999999999999999998643
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0038 Score=75.17 Aligned_cols=172 Identities=13% Similarity=0.044 Sum_probs=94.0
Q ss_pred ccccchhhHHHHHHHHHhc-----cCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHH
Q 000202 977 VTAVNYTQRNVRKIFRYVN-----DVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVL 1051 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 1051 (1866)
+..+.|++..++++..++. ......|.|+|.+|+|||++|+.+.+. .... .+.++.+.......+
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~~~~~----- 97 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEKSGDL----- 97 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCSHHHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccchhHH-----
Confidence 3456677777766666663 233456889999999999999999542 2222 222332221111111
Q ss_pred HHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCC------------------CCCCCcEEEE
Q 000202 1052 RQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVP------------------GSENGSKIFM 1111 (1866)
Q Consensus 1052 ~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~------------------~~~~gs~Iiv 1111 (1866)
...+.. ..+..+|+||++... .....+...+. ...++..+|.
T Consensus 98 ----------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 98 ----------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp ----------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred ----------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 111111 235568888888752 11111111110 0011346666
Q ss_pred ccCChhhhc---cCCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 000202 1112 ASRELDVCR---NMDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTA 1177 (1866)
Q Consensus 1112 TTR~~~v~~---~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g 1177 (1866)
+|....... .-.....+.+.+++.++...++.+.+...... --.+....|++.+.|.|-.+..+.
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT-CEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE-ECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHCcCHHHHHHHH
Confidence 666533211 01224689999999999999998776432211 123456678888999985554443
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0069 Score=70.32 Aligned_cols=149 Identities=11% Similarity=0.079 Sum_probs=76.9
Q ss_pred cCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHh
Q 000202 996 DVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVL 1075 (1866)
Q Consensus 996 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L 1075 (1866)
......+.|+|.+|+|||+||+.+++. .. .. .+.+..+.. +.. .........+...+....
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~~-~~~i~~~~~-------------~~g-~~~~~~~~~~~~~~~~~~ 121 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE--SN--FP-FIKICSPDK-------------MIG-FSETAKCQAMKKIFDDAY 121 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH--HT--CS-EEEEECGGG-------------CTT-CCHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH--hC--CC-EEEEeCHHH-------------hcC-CchHHHHHHHHHHHHHHH
Confidence 445567889999999999999999653 11 11 122222210 000 000000111222233334
Q ss_pred CCCcEEEEEeCCCCc------------cchhhhcCCCC---CCCCCcEEEEccCChhhhcc---C-CCCcEEEecCCCh-
Q 000202 1076 NGEKFLLLLDDVWEQ------------IDLEAVGIPVP---GSENGSKIFMASRELDVCRN---M-DVNMVVKLETLSM- 1135 (1866)
Q Consensus 1076 ~~kr~LlVlDdv~~~------------~~~~~l~~~l~---~~~~gs~IivTTR~~~v~~~---~-~~~~~~~l~~L~~- 1135 (1866)
..+..+|+||++... ...+.+...+. .......||.||........ . .....+.+++++.
T Consensus 122 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r 201 (272)
T 1d2n_A 122 KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATG 201 (272)
T ss_dssp TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEH
T ss_pred hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHH
Confidence 567899999998532 11122222221 12233456777776644322 1 1246788999988
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCC
Q 000202 1136 KDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGL 1169 (1866)
Q Consensus 1136 ~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl 1169 (1866)
++...++.+.. .. . .+....|++.+.|.
T Consensus 202 ~~i~~i~~~~~-~~--~---~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 202 EQLLEALELLG-NF--K---DKERTTIAQQVKGK 229 (272)
T ss_dssp HHHHHHHHHHT-CS--C---HHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcC-CC--C---HHHHHHHHHHhcCC
Confidence 66655555432 11 1 23456677777773
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0041 Score=77.21 Aligned_cols=152 Identities=18% Similarity=0.206 Sum_probs=85.5
Q ss_pred CCCceeehhhHHHHHHhhhc----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 185 SKDLIGVEWRIKEIESLLRT----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
..+++|.+..++++.+.+.. +..-.+-|.|+|++|+|||+||++++.+....| +.....++. ..
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f----~~is~~~~~--~~ 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF----FHISGSDFV--EL 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE----EEEEGGGTT--TC
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe----eeCCHHHHH--HH
Confidence 35688988887777665431 111234588999999999999999998764332 111111110 00
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccCCC--C
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLDRF--A 316 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~ 316 (1866)
+. +. ........+.......+.+|+||+++.. ..+..++..+..+ .
T Consensus 89 ~~-----------g~-----~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 FV-----------GV-----GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp CT-----------TH-----HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred Hh-----------cc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 00 00 0000112333344567899999999531 1234444333221 2
Q ss_pred CCCEEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhc
Q 000202 317 SGSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 317 ~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
.+..||.||...+.+... .....+.++..+.++-.+++..++
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~ 199 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT 199 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHH
Confidence 355677777665443211 124477888888888778887665
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0018 Score=82.50 Aligned_cols=185 Identities=12% Similarity=0.089 Sum_probs=98.7
Q ss_pred ccccchhhHHHHHHHHHhcc-----------------CCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecC
Q 000202 977 VTAVNYTQRNVRKIFRYVND-----------------VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSR 1039 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~-----------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 1039 (1866)
+..+.|++..++++.+++.. ...+.+.|+|++|+||||+|+.+++.. .+ ..+.++.+.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~ 112 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASD 112 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTS
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCC
Confidence 34567777888888887743 134688999999999999999996532 12 233444444
Q ss_pred CCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHH--HhCCCcEEEEEeCCCCcc-----chhhhcCCCCCCCCCcEEEEc
Q 000202 1040 YWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQ--VLNGEKFLLLLDDVWEQI-----DLEAVGIPVPGSENGSKIFMA 1112 (1866)
Q Consensus 1040 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~--~L~~kr~LlVlDdv~~~~-----~~~~l~~~l~~~~~gs~IivT 1112 (1866)
..+.. +....+........ ... ......+ ...+++.+|++|++.... .+..+...+.. .+..||++
T Consensus 113 ~~~~~-~~~~~i~~~~~~~~-~~~---~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli 185 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNMS-VVG---YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILI 185 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBCC-STT---TTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEE
T ss_pred cchHH-HHHHHHHHHhcccc-HHH---HHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEE
Confidence 33332 22222221111000 000 0000000 123578999999997531 11222221111 22345555
Q ss_pred cCChh---hhccCCCCcEEEecCCChHHHHHHHHHHhcC--CCCCchHHHHHHHHHHHcCCCh-HHHHHH
Q 000202 1113 SRELD---VCRNMDVNMVVKLETLSMKDAWELFCKEVGG--IIQSPDIHLYARAIVKGCCGLP-LLTIVT 1176 (1866)
Q Consensus 1113 TR~~~---v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~--~~~~~~~~~~~~~I~~~c~GlP-LAi~~~ 1176 (1866)
+.+.. +.........+.+++++.++..+.+.+.+.. ....+ +....|++.++|.+ -|+..+
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHH
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 54322 2222222457899999999999988776532 22222 23556888899954 444444
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0007 Score=73.30 Aligned_cols=103 Identities=18% Similarity=0.242 Sum_probs=59.0
Q ss_pred eEEEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHHHHHHHHHHhhhhhhhccCeEEEEEEccC
Q 000202 709 VRILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSEIRRAENMADLSERLLVVLDDVC 788 (1866)
Q Consensus 709 l~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~r~LlVlddv~ 788 (1866)
-..+-|+|+.|.||||||+.+.+.-.....+. .+++ +..+++..+...+.............+.-+|||||++
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~ 110 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLG 110 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCC
Confidence 46789999999999999999986543222222 2233 4555555554443322111122233456689999998
Q ss_pred C--CChHHHHHHHHhcccCCCCCcEEEEecCC
Q 000202 789 D--IDDEELHNFRLLISNMRDSGSCFLVTTHS 818 (1866)
Q Consensus 789 ~--~~~~~w~~~~~~l~~~~~~gs~iivttr~ 818 (1866)
. .+...-..+...+.....+|..||+||..
T Consensus 111 ~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 111 SERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4 33333234544443322357778888764
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0055 Score=82.28 Aligned_cols=148 Identities=14% Similarity=0.124 Sum_probs=83.8
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc------cceEEEEeeccccccccHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF------EGSYFACNVRAAEETGRLDD 257 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 257 (1866)
....+|||+.+++.+...|.... ..-+.++|.+|+|||++|+.+++.+.... ...++..+.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~----------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM----------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------
Confidence 44679999999999999997533 23478999999999999999999763321 111111100
Q ss_pred HHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccch------h
Q 000202 258 LRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQV------L 331 (1866)
Q Consensus 258 l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v------~ 331 (1866)
..... ..........+......++.+|++| ...+....+.+.+. ....++|.||..... -
T Consensus 245 -----g~~~~-----G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 -----GTKYR-----GEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred -----ccccc-----chHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhcc
Confidence 00000 0111112233333344678899999 22233334444433 234567766654431 0
Q ss_pred ccC-ccceeeecCCCCHHHHHHHHHhhc
Q 000202 332 TNC-EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 332 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
... .....+.++.++.++..+++....
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 000 112568999999999999998554
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00066 Score=78.88 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=82.7
Q ss_pred cCCCceeehhhHHHHHHhhhc----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccc
Q 000202 184 ESKDLIGVEWRIKEIESLLRT----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETG 253 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (1866)
...+++|.+..++.+.+.+.. +....+.+.|+|.+|+|||+||++++++....|-. + ..... ..
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v-~~~~~--~~ 82 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---M-GGSSF--IE 82 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---C-CSCTT--TT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---e-chHHH--HH
Confidence 346799999988888876641 11122347899999999999999999976443311 1 01110 00
Q ss_pred cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCHH-----------------HHHHHhhccCCCC
Q 000202 254 RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPR-----------------QIELLIGRLDRFA 316 (1866)
Q Consensus 254 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-----------------~~~~l~~~~~~~~ 316 (1866)
...+... .. ....+......++.+|+||+++... .+..++..+....
T Consensus 83 -----------~~~~~~~-~~----~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (268)
T 2r62_A 83 -----------MFVGLGA-SR----VRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG 146 (268)
T ss_dssp -----------SCSSSCS-SS----SSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS
T ss_pred -----------hhcchHH-HH----HHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc
Confidence 0000000 00 1122233334567899999996421 1223333332221
Q ss_pred ---CCCEEEEEccccchhcc-C----ccceeeecCCCCHHHHHHHHHhhc
Q 000202 317 ---SGSQVIITTRDKQVLTN-C----EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 317 ---~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
....||.||.....+.. . .....+.++..+.++-.+++...+
T Consensus 147 ~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 147 SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 22456667765542211 1 123457788888888777776554
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.002 Score=76.00 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=38.3
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..++|++..+.++.+.+..-......|.|+|.+|+|||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358999999999888876533334468899999999999999999853
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.015 Score=70.22 Aligned_cols=158 Identities=10% Similarity=0.002 Sum_probs=82.1
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHH-HHHhC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKL-WQVLN 1076 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~L~ 1076 (1866)
..+.|.|+|..|+|||+||+.+++.. .. ..+.++.+.-.+. . ..........+ ...-.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~--~~---~~~~i~~~~l~~~--------------~--~g~~~~~~~~~~~~a~~ 174 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS--GA---TFFSISASSLTSK--------------W--VGEGEKMVRALFAVARC 174 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT--TC---EEEEEEGGGGCCS--------------S--TTHHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc--CC---eEEEEehHHhhcc--------------c--cchHHHHHHHHHHHHHh
Confidence 34578899999999999999996532 11 2234444321110 0 00111111122 22223
Q ss_pred CCcEEEEEeCCCCc-------------cchhhhcCCCC----CCCCCcEEEEccCChhhhc-c--CCCCcEEEecCCChH
Q 000202 1077 GEKFLLLLDDVWEQ-------------IDLEAVGIPVP----GSENGSKIFMASRELDVCR-N--MDVNMVVKLETLSMK 1136 (1866)
Q Consensus 1077 ~kr~LlVlDdv~~~-------------~~~~~l~~~l~----~~~~gs~IivTTR~~~v~~-~--~~~~~~~~l~~L~~~ 1136 (1866)
.+..+|+||++... .....+...+. ....+..||.||....... . -.....+.+...+.+
T Consensus 175 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~ 254 (357)
T 3d8b_A 175 QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEAS 254 (357)
T ss_dssp TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHH
T ss_pred cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHH
Confidence 56789999999431 01112211111 1123445565665432211 0 123357788899999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCC-hHHHHHHH
Q 000202 1137 DAWELFCKEVGGIIQSPDIHLYARAIVKGCCGL-PLLTIVTA 1177 (1866)
Q Consensus 1137 ~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLAi~~~g 1177 (1866)
+..+++...+......- ..+....|++.+.|. +-.|..+.
T Consensus 255 ~r~~il~~~~~~~~~~l-~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 255 ARKQIVINLMSKEQCCL-SEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp HHHHHHHHHHHTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCc-cHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99888877664321111 123456688888884 44454443
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0039 Score=74.01 Aligned_cols=132 Identities=14% Similarity=0.117 Sum_probs=69.7
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
....|.|+|.+|+|||++|+.+++...........-++.++.. .+..... ..........+...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------------~l~~~~~-g~~~~~~~~~~~~~--- 129 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD------------DLVGQYI-GHTAPKTKEVLKRA--- 129 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG------------GTCCSST-TCHHHHHHHHHHHH---
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH------------Hhhhhcc-cccHHHHHHHHHhc---
Confidence 3446889999999999999988553222111111112333210 0111000 00111112222222
Q ss_pred CcEEEEEeCCCC-----------ccchhhhcCCCCCCCCCcEEEEccCChh----------hhccCCCCcEEEecCCChH
Q 000202 1078 EKFLLLLDDVWE-----------QIDLEAVGIPVPGSENGSKIFMASRELD----------VCRNMDVNMVVKLETLSMK 1136 (1866)
Q Consensus 1078 kr~LlVlDdv~~-----------~~~~~~l~~~l~~~~~gs~IivTTR~~~----------v~~~~~~~~~~~l~~L~~~ 1136 (1866)
+..+|+||++.. ......+...+.....+..||.||.... +...+ ...+.+++++.+
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~ 207 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDE 207 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHH
Confidence 345999999973 2223333333333344567888876432 22221 367899999999
Q ss_pred HHHHHHHHHhc
Q 000202 1137 DAWELFCKEVG 1147 (1866)
Q Consensus 1137 ~a~~Lf~~~~~ 1147 (1866)
+-.+++...+.
T Consensus 208 ~~~~il~~~l~ 218 (309)
T 3syl_A 208 ELFEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888877654
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0066 Score=72.56 Aligned_cols=171 Identities=15% Similarity=0.100 Sum_probs=94.2
Q ss_pred ccccchhhHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+..+.|.++.++.+.+++..... .++.+.|..|+|||++|+.+.+... ...+.++.+. .... ..+.++....
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~-~~~~-~i~~~~~~~~ 97 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSD-CKID-FVRGPLTNFA 97 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTT-CCHH-HHHTHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEcccc-cCHH-HHHHHHHHHH
Confidence 34566777778888888865543 5677778899999999999954321 1233444333 2222 2222221111
Q ss_pred cCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCcc---chhhhcCCCCCCCCCcEEEEccCChhh-----hccCCCCcE
Q 000202 1056 LHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQI---DLEAVGIPVPGSENGSKIFMASRELDV-----CRNMDVNMV 1127 (1866)
Q Consensus 1056 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~~~l~~~l~~~~~gs~IivTTR~~~v-----~~~~~~~~~ 1127 (1866)
... ...+++.+|++|++.... ..+.+...+.....+.++|+||....- ...+ .+
T Consensus 98 ~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~---~~ 159 (324)
T 3u61_B 98 SAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC---RV 159 (324)
T ss_dssp HBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS---EE
T ss_pred hhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC---cE
Confidence 000 012477899999998643 333333322222245678888776442 1222 47
Q ss_pred EEecCCChHHHHHHHH-------HHhc--CCCCCchHHHHHHHHHHHcCCChHHHH
Q 000202 1128 VKLETLSMKDAWELFC-------KEVG--GIIQSPDIHLYARAIVKGCCGLPLLTI 1174 (1866)
Q Consensus 1128 ~~l~~L~~~~a~~Lf~-------~~~~--~~~~~~~~~~~~~~I~~~c~GlPLAi~ 1174 (1866)
+++++++.++-.+++. +.+. +..-.+ .+....|++.++|.+-.+.
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHH
Confidence 8999999888544332 2221 111111 2455667888888765443
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0065 Score=73.12 Aligned_cols=179 Identities=11% Similarity=0.098 Sum_probs=93.4
Q ss_pred ccccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccc-eEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFH-VIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+..+.|.+..++.+...+...+.+.+.++|..|+||||+|+.+...-.- ..+. ...-++.+.......+. .+...+.
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~~~~~~~~~~~~~ir-~~i~~~~ 101 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG-KNYSNMVLELNASDDRGIDVVR-NQIKDFA 101 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT-TSHHHHEEEECTTSCCSHHHHH-THHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC-CCccceEEEEcCcccccHHHHH-HHHHHHH
Confidence 3345566666677777776665555899999999999999999543111 1111 11222222222222111 1111111
Q ss_pred cCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCChh-hhccC-CCCcEEEec
Q 000202 1056 LHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRELD-VCRNM-DVNMVVKLE 1131 (1866)
Q Consensus 1056 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~ 1131 (1866)
... ..+.+.+-++|+|++.. ....+.+...+.......++|++|.... +.... .-...+.+.
T Consensus 102 ~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~ 167 (340)
T 1sxj_C 102 STR--------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQ 167 (340)
T ss_dssp HBC--------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred hhc--------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEecc
Confidence 000 00123467889999864 2233333322222224566777765432 11110 112478899
Q ss_pred CCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHH
Q 000202 1132 TLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLL 1172 (1866)
Q Consensus 1132 ~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLA 1172 (1866)
+++.++..+.+.+.+......- -.+..+.|++.++|.+--
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~~i-~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 168 PLPQEAIERRIANVLVHEKLKL-SPNAEKALIELSNGDMRR 207 (340)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCB-CHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 9999998888876663211111 123456688888887753
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0063 Score=72.92 Aligned_cols=166 Identities=15% Similarity=0.106 Sum_probs=93.9
Q ss_pred hHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcCcc---cc-----------------cccceEEEEEecCCCC
Q 000202 984 QRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISYPE---VK-----------------VMFHVIIWVTVSRYWN 1042 (1866)
Q Consensus 984 ~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~---~~-----------------~~F~~~~wv~vs~~~~ 1042 (1866)
.+..+.+.+.+...+. ..+.++|..|+||||+|+.+.+.-. .. .+++ ..++....
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~--- 83 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEK--- 83 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCT---
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccc---
Confidence 3455666666655554 4688999999999999999854211 00 0122 12222110
Q ss_pred HHHHHHHHHHHhccCCCCccCHHHHHHHHHHHh-----CCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCC
Q 000202 1043 TRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVL-----NGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRE 1115 (1866)
Q Consensus 1043 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~ 1115 (1866)
.......+++. .+.+.+ .+++-++|+|+++.- ...+.+...+.....+..+|++|.+
T Consensus 84 ---------------~~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~ 147 (334)
T 1a5t_A 84 ---------------GKNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATRE 147 (334)
T ss_dssp ---------------TCSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESC
T ss_pred ---------------cCCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 00111122221 222222 356788999999753 3334444434333346677777765
Q ss_pred hh-hhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 000202 1116 LD-VCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIV 1175 (1866)
Q Consensus 1116 ~~-v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~ 1175 (1866)
.+ +.... .-...+++++++.++..+.+.+.. ... .+.+..+++.++|.|..+..
T Consensus 148 ~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~~~---~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 148 PERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---TMS---QDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---CCC---HHHHHHHHHHTTTCHHHHHH
T ss_pred hHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 43 32211 123579999999999999888765 111 23456788999999965543
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00057 Score=74.27 Aligned_cols=83 Identities=18% Similarity=0.108 Sum_probs=59.8
Q ss_pred HHhcCCCCcEEEccCC-CCC-----CCChhhcCCCCCcEEecccccCccc----CCccccCCCCCcEEEccCCCCCc---
Q 000202 1417 FFELMTSLKVLNLSKT-RIK-----SLPETLVNLKCLQILILRDCDFLFV----LPPEVGSLECLEVLDLRGTEIKM--- 1483 (1866)
Q Consensus 1417 ~~~~l~~L~~L~Ls~~-~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~----lP~~i~~L~~L~~L~l~~~~i~~--- 1483 (1866)
.+...+.|++|+|++| .+. .+...+....+|++|+|++|.+... +...+...++|++|+|++|.|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3466788999999999 876 3556677788999999999985432 33445566789999999998873
Q ss_pred --CChhhcCCCccceecc
Q 000202 1484 --LPKEIGKLTSLRYLTV 1499 (1866)
Q Consensus 1484 --lp~~i~~L~~L~~L~l 1499 (1866)
+...+...++|++|++
T Consensus 111 ~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 111 LALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHHhCCCceEEEe
Confidence 3445555666666665
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0047 Score=81.11 Aligned_cols=151 Identities=19% Similarity=0.232 Sum_probs=87.1
Q ss_pred CCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 186 KDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
.++.|.+..+++|.+.+.. +....+-|.++|.+|+|||+||++++++....| +..+..+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~----~~v~~~~------ 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPE------ 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE----EEEEHHH------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE----EEEEhHH------
Confidence 4688999999888876531 123467799999999999999999998764432 2222111
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-------------HHHHHHhhccCCCC--CCC
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-------------RQIELLIGRLDRFA--SGS 319 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~~--~gs 319 (1866)
+.+...+ ..............+..+.+|+||+++.. ..+..++..+.... .+.
T Consensus 274 -------l~sk~~g-----ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 274 -------IMSKLAG-----ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp -------HHSSCTT-----HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred -------hhcccch-----HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 1100000 00000112222233567899999998631 12233333222221 233
Q ss_pred EEEEEccccchhcc-C----ccceeeecCCCCHHHHHHHHHhhc
Q 000202 320 QVIITTRDKQVLTN-C----EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 320 ~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
-||.||...+.+.. . .-+..++++..+.++-.++|..+.
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l 385 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHh
Confidence 45556655433321 1 235678899999999999998766
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0066 Score=72.73 Aligned_cols=170 Identities=17% Similarity=0.198 Sum_probs=92.4
Q ss_pred cCCCceeehhhHHHHHHhhhcC---CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTG---SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~---~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
....++|.+..++.+...+..+ ......++|+|.+|+||||||+.++......|. ...+. ......++.
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~-----~~sg~--~~~~~~~l~- 94 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH-----VTSGP--VLVKQGDMA- 94 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE-----EEETT--TCCSHHHHH-
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE-----EEech--HhcCHHHHH-
Confidence 3456889888888877776532 223456899999999999999999997644321 11111 000001110
Q ss_pred HHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCC--------C----------CCE
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFA--------S----------GSQ 320 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~--------~----------gs~ 320 (1866)
.+...+ .++-++++|+++. ....+.+...+.... . ...
T Consensus 95 ---------------------~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 95 ---------------------AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp ---------------------HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred ---------------------HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 001111 2344677888763 233333332211110 0 112
Q ss_pred EE-EEccccchhccC--ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce
Q 000202 321 VI-ITTRDKQVLTNC--EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 321 Ii-iTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
++ .|++...+.... .....+.+++.+.++-.+++.+.+-... ..-..+.+..|++.++|.|-.
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~ 218 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRI 218 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHH
Confidence 22 344433221111 1123578999999999999987652111 112245678889999998853
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.004 Score=64.71 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=23.5
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
-..++|+|..|+|||||++.++.....
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 357999999999999999999996654
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0081 Score=75.30 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=38.4
Q ss_pred CCCceeehhhHHHHHHhh---hcCCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 185 SKDLIGVEWRIKEIESLL---RTGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L---~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..+++|.+..++.+..++ ..+....+-+.++|++|+|||+||+++++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 368999999887655544 33333345689999999999999999998764
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=96.66 E-value=0.015 Score=69.23 Aligned_cols=155 Identities=15% Similarity=0.086 Sum_probs=82.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHH-HHHhCCC
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKL-WQVLNGE 1078 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~L~~k 1078 (1866)
+-|.++|.+|+|||+||+++++. .... .+.++.+ .+ ... ...........+ ...-..+
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~--~~~~---~~~v~~~------~l----~~~------~~g~~~~~~~~~f~~a~~~~ 110 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------DL----VSK------WMGESEKLVKQLFAMARENK 110 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH--HTCE---EEEEEHH------HH----HTT------TGGGHHHHHHHHHHHHHHTS
T ss_pred CeEEEECCCCCcHHHHHHHHHHH--HCCC---EEEEchH------HH----hhc------ccchHHHHHHHHHHHHHhcC
Confidence 46889999999999999999653 2211 2223221 11 100 011112222222 2223456
Q ss_pred cEEEEEeCCCCccc-------------hhhhcCC---CCCCCCCcEEEEccCChhhhcc---CCCCcEEEecCCChHHHH
Q 000202 1079 KFLLLLDDVWEQID-------------LEAVGIP---VPGSENGSKIFMASRELDVCRN---MDVNMVVKLETLSMKDAW 1139 (1866)
Q Consensus 1079 r~LlVlDdv~~~~~-------------~~~l~~~---l~~~~~gs~IivTTR~~~v~~~---~~~~~~~~l~~L~~~~a~ 1139 (1866)
..+|+||++..... ...+... +.....+..||.||........ -.....+.+...+.++-.
T Consensus 111 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~ 190 (322)
T 3eie_A 111 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 190 (322)
T ss_dssp SEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHH
T ss_pred CeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHH
Confidence 78999999974210 1112111 1112334556667765433110 023457788899999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHcCCC-hHHHHHH
Q 000202 1140 ELFCKEVGGIIQSPDIHLYARAIVKGCCGL-PLLTIVT 1176 (1866)
Q Consensus 1140 ~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLAi~~~ 1176 (1866)
++|...+........ ......|++.+.|. +-.|..+
T Consensus 191 ~il~~~~~~~~~~~~-~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 191 TMFEINVGDTPCVLT-KEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp HHHHHHHTTCCCCCC-HHHHHHHHHTTTTCCHHHHHHH
T ss_pred HHHHHHhccCCCCCC-HHHHHHHHHHcCCCCHHHHHHH
Confidence 999988765432211 22345678888874 4334333
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0084 Score=73.09 Aligned_cols=49 Identities=10% Similarity=-0.085 Sum_probs=32.3
Q ss_pred cEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcC-CChHHHHH
Q 000202 1126 MVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCC-GLPLLTIV 1175 (1866)
Q Consensus 1126 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~-GlPLAi~~ 1175 (1866)
..+.+.+++.++..+++.+.+......- -.+....|++.+. |.|-.+..
T Consensus 252 ~~i~~~~~~~~e~~~il~~~~~~~~~~~-~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 252 LIVSTTPYSEKDTKQILRIRCEEEDVEM-SEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHTTCCB-CHHHHHHHHHHHHHSCHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCCCHHHHHH
Confidence 3579999999999999987764321111 1334566788887 77754443
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0064 Score=72.63 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=82.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
...+.|+|.+|+||||||+.+++..... .+ .+++++. ..+...+...+... .. ..+...+. +
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~------~~~~~~~~~~~~~~-----~~----~~~~~~~~-~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSA------DDFAQAMVEHLKKG-----TI----NEFRNMYK-S 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEH------HHHHHHHHHHHHHT-----CH----HHHHHHHH-T
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEH------HHHHHHHHHHHHcC-----cH----HHHHHHhc-C
Confidence 4568899999999999999996532211 11 2344543 23333443333211 11 11222222 3
Q ss_pred cEEEEEeCCCCcc---ch-hhhcCCCCC-CCCCcEEEEccCChh---------hhccCCCCcEEEecCCChHHHHHHHHH
Q 000202 1079 KFLLLLDDVWEQI---DL-EAVGIPVPG-SENGSKIFMASRELD---------VCRNMDVNMVVKLETLSMKDAWELFCK 1144 (1866)
Q Consensus 1079 r~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~IivTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~Lf~~ 1144 (1866)
..+|+|||+.... .+ +.+...+.. ...|..||+||.... +...+....++.+++ +.++..+++.+
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 5689999997532 11 222221110 124567888776431 122222336789999 99999999987
Q ss_pred HhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1145 EVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1145 ~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
.+......- -.+....|++.+ |..-
T Consensus 178 ~~~~~~~~l-~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 178 KLKEFNLEL-RKEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC-SSHH
T ss_pred HHHhcCCCC-CHHHHHHHHHhC-CCHH
Confidence 764221111 123456677777 7654
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.029 Score=69.81 Aligned_cols=152 Identities=12% Similarity=0.106 Sum_probs=81.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+.|.++|++|+|||+||+.+++... . .-++.++.. + +.... .+. .......+. ...-..+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~-~-----~~~~~v~~~-~---l~~~~---~g~---~~~~~~~~f---~~a~~~~ 227 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEAN-N-----STFFSISSS-D---LVSKW---LGE---SEKLVKNLF---QLARENK 227 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCC-S-----SEEEEECCC-------------------CCCTHHHHH---HHHHHSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC-C-----CCEEEEeHH-H---HHhhh---cch---HHHHHHHHH---HHHHHcC
Confidence 45788999999999999999965321 1 122333321 1 11100 010 111122222 2222456
Q ss_pred cEEEEEeCCCCcc-------------chhhhcCCCCC---CCCCcEEEEccCChhhhcc---CCCCcEEEecCCChHHHH
Q 000202 1079 KFLLLLDDVWEQI-------------DLEAVGIPVPG---SENGSKIFMASRELDVCRN---MDVNMVVKLETLSMKDAW 1139 (1866)
Q Consensus 1079 r~LlVlDdv~~~~-------------~~~~l~~~l~~---~~~gs~IivTTR~~~v~~~---~~~~~~~~l~~L~~~~a~ 1139 (1866)
..+|+||++.... ....+...+.. ...+..||.||........ -..+..+.+...+.++..
T Consensus 228 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~ 307 (444)
T 2zan_A 228 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARA 307 (444)
T ss_dssp SEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHH
T ss_pred CeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHH
Confidence 7899999997530 11223333322 2345667767765432110 123457888888999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHcCCCh
Q 000202 1140 ELFCKEVGGIIQSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1140 ~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 1170 (1866)
.+|..++........ ......|++.+.|..
T Consensus 308 ~il~~~l~~~~~~l~-~~~l~~la~~t~G~s 337 (444)
T 2zan_A 308 AMFRLHLGSTQNSLT-EADFQELGRKTDGYS 337 (444)
T ss_dssp HHHHHHHTTSCEECC-HHHHHHHHHHTTTCC
T ss_pred HHHHHHHhcCCCCCC-HHHHHHHHHHcCCCC
Confidence 999887754321111 233456888888854
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.029 Score=67.66 Aligned_cols=147 Identities=16% Similarity=0.116 Sum_probs=78.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCc
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEK 1079 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 1079 (1866)
+-|.++|.+|+|||+||+++++.. .. ..+.+..+ .+.. .. .......+...+...-..+.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~--~~---~~~~v~~~------~l~~--------~~-~g~~~~~~~~~f~~a~~~~~ 144 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA--NS---TFFSVSSS------DLVS--------KW-MGESEKLVKQLFAMARENKP 144 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH--TC---EEEEEEHH------HHHS--------CC----CHHHHHHHHHHHHHTSS
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh--CC---CEEEeeHH------HHhh--------hh-cchHHHHHHHHHHHHHHcCC
Confidence 347899999999999999996532 11 12223222 1111 00 01111222222222334578
Q ss_pred EEEEEeCCCCccc-------------hhhhcCCC---CCCCCCcEEEEccCChhh-----hccCCCCcEEEecCCChHHH
Q 000202 1080 FLLLLDDVWEQID-------------LEAVGIPV---PGSENGSKIFMASRELDV-----CRNMDVNMVVKLETLSMKDA 1138 (1866)
Q Consensus 1080 ~LlVlDdv~~~~~-------------~~~l~~~l---~~~~~gs~IivTTR~~~v-----~~~~~~~~~~~l~~L~~~~a 1138 (1866)
.+|+||++..... ...+...+ .....+..||.||..... .+ .....+.+...+.++-
T Consensus 145 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r 222 (355)
T 2qp9_X 145 SIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAAR 222 (355)
T ss_dssp EEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHH
T ss_pred eEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHH
Confidence 9999999974210 11121111 111234556666665432 22 3346788999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHcCCC
Q 000202 1139 WELFCKEVGGIIQSPDIHLYARAIVKGCCGL 1169 (1866)
Q Consensus 1139 ~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl 1169 (1866)
.+++...+........ ......|++.+.|.
T Consensus 223 ~~il~~~l~~~~~~~~-~~~l~~la~~t~G~ 252 (355)
T 2qp9_X 223 TTMFEINVGDTPSVLT-KEDYRTLGAMTEGY 252 (355)
T ss_dssp HHHHHHHHTTSCBCCC-HHHHHHHHHHTTTC
T ss_pred HHHHHHHHhhCCCCCC-HHHHHHHHHHcCCC
Confidence 9999887754422111 22345678888885
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0056 Score=82.20 Aligned_cols=147 Identities=15% Similarity=0.221 Sum_probs=82.9
Q ss_pred CCceeehhhHHHHHHhhhcCC-------CCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 186 KDLIGVEWRIKEIESLLRTGS-------AGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~-------~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
..++|.+..++.+...+.... .....+.++|.+|+|||++|+++++.....-...+.+. ..++.......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 468999999988887776321 12336899999999999999999987633222222332 22211110000
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHh-hcCcEEEEEecCCC--HHHHHHHhhccCC-----------CCCCCEEEEE
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRL-ARKKVLIVFDDVNH--PRQIELLIGRLDR-----------FASGSQVIIT 324 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~--~~~~~~l~~~~~~-----------~~~gs~IiiT 324 (1866)
...+...+ +...-+|+||+++. .+....|+..+.. .....+||+|
T Consensus 568 ---------------------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 568 ---------------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp ------------------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred ---------------------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 00011111 23345899999974 4444554443322 1134688888
Q ss_pred cccc-----------------chhccCccceeeecCCCCHHHHHHHHHhhc
Q 000202 325 TRDK-----------------QVLTNCEVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 325 TR~~-----------------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
|... .+... .+.++.+.+++.++-.+++....
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~R--l~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINR--IDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTT--SSEEEECC--CHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhh--CCeEEecCCCCHHHHHHHHHHHH
Confidence 8731 11122 23578899999988887776543
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0024 Score=69.23 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=37.3
Q ss_pred cccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhc
Q 000202 978 TAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
..+.|++.+++.+.+.+.......+.|+|.+|+||||||+.+++
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHH
Confidence 34678888999999998776667788999999999999999965
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.048 Score=66.73 Aligned_cols=177 Identities=11% Similarity=-0.007 Sum_probs=89.8
Q ss_pred ccchhhHHHHHHHHHhc------------cCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHH
Q 000202 979 AVNYTQRNVRKIFRYVN------------DVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKI 1046 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 1046 (1866)
.+.|.+..++.+...+. ....+-|.|+|..|+|||+||+.+++.. .. ..+.++.+.-.+ ..
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~--~~---~~~~v~~~~l~~--~~ 188 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES--NA---TFFNISAASLTS--KY 188 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT--TC---EEEEECSCCC------
T ss_pred HhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh--cC---cEEEeeHHHhhc--cc
Confidence 45566666666666551 1223578899999999999999995431 11 122333322111 00
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--------c-----chhhhcCCC---CC-CCCCcEE
Q 000202 1047 QKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--------I-----DLEAVGIPV---PG-SENGSKI 1109 (1866)
Q Consensus 1047 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--------~-----~~~~l~~~l---~~-~~~gs~I 1109 (1866)
. ......+...+...-.....+|+||+++.. . ....+...+ .. ....-.|
T Consensus 189 ~-------------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~v 255 (389)
T 3vfd_A 189 V-------------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLV 255 (389)
T ss_dssp ----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEE
T ss_pred c-------------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEE
Confidence 0 001111112222222345689999999642 0 011111111 11 1123455
Q ss_pred EEccCChhhhcc---CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH-HHHHH
Q 000202 1110 FMASRELDVCRN---MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL-LTIVT 1176 (1866)
Q Consensus 1110 ivTTR~~~v~~~---~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-Ai~~~ 1176 (1866)
|.||........ -.....+.+...+.++..+++...+......-. .+....|++.+.|..- +|..+
T Consensus 256 I~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~-~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 256 MGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT-QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC-HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCCHHHHHHH
Confidence 556654332110 122356889999999999999877754322111 2345678888888654 44443
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.047 Score=67.07 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=38.6
Q ss_pred CCCCCcccEEEccCC--cCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEecccccCcccCCccccCCC
Q 000202 1393 RPSCPNLLTLFLQRN--CRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDCDFLFVLPPEVGSLE 1469 (1866)
Q Consensus 1393 ~~~~~~L~~L~L~~~--~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~ 1469 (1866)
+.+|.+|+.+.+..| ..+..++...|..+.+|+.+.+..+ ++.++ ..+..+.+|+.+.+..+. ...-...+..+.
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~ 160 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCY 160 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCT
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-eeecccceeccc
Confidence 455566666655443 1244555555555555555544332 33333 234455555555554321 111122344455
Q ss_pred CCcEEEcc
Q 000202 1470 CLEVLDLR 1477 (1866)
Q Consensus 1470 ~L~~L~l~ 1477 (1866)
+|+.+.+.
T Consensus 161 ~L~~i~~~ 168 (394)
T 4gt6_A 161 SLHTVTLP 168 (394)
T ss_dssp TCCEEECC
T ss_pred cccccccc
Confidence 55555554
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.052 Score=63.69 Aligned_cols=174 Identities=11% Similarity=0.046 Sum_probs=89.6
Q ss_pred ccchhhHHHHHHHHHhcc------------CCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHH
Q 000202 979 AVNYTQRNVRKIFRYVND------------VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKI 1046 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 1046 (1866)
.+.|.+..++.+...+.. .....|.|+|.+|+||||+|+.+++.. .. ..+.++.+.-.+
T Consensus 22 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~--~~---~~~~i~~~~l~~---- 92 (297)
T 3b9p_A 22 DIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC--SA---TFLNISAASLTS---- 92 (297)
T ss_dssp GSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--TC---EEEEEESTTTSS----
T ss_pred HhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--CC---CeEEeeHHHHhh----
Confidence 344555555555554411 234578899999999999999996532 11 122334332110
Q ss_pred HHHHHHHhccCCCCccCHHHHHHH-HHHHhCCCcEEEEEeCCCCccc-------------hhhhc---CCCCCC--CCCc
Q 000202 1047 QKQVLRQLSLHCKDRETDAQVAEK-LWQVLNGEKFLLLLDDVWEQID-------------LEAVG---IPVPGS--ENGS 1107 (1866)
Q Consensus 1047 ~~~i~~~l~~~~~~~~~~~~~~~~-l~~~L~~kr~LlVlDdv~~~~~-------------~~~l~---~~l~~~--~~gs 1107 (1866)
.. .......... +......+..+|+||++..... ...+. ..++.. +.+.
T Consensus 93 ----------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 93 ----------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp ----------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred ----------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 00 0111122222 2222345678999999964210 00111 111111 1334
Q ss_pred EEEEccCChhh-----hccCCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH-HHHHH
Q 000202 1108 KIFMASRELDV-----CRNMDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL-LTIVT 1176 (1866)
Q Consensus 1108 ~IivTTR~~~v-----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-Ai~~~ 1176 (1866)
.||.||..... .+. ....+.+...+.++...++...+......-. .+....+++.+.|.+- ++..+
T Consensus 161 ~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPLD-TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp EEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCSC-HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCCHHHHHHH
Confidence 56667765432 222 2356778888888888888776543221111 2345668888888875 44333
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0046 Score=72.48 Aligned_cols=28 Identities=39% Similarity=0.565 Sum_probs=24.3
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
..+.+.++|++|+|||+||+++++....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567899999999999999999998743
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.027 Score=70.30 Aligned_cols=149 Identities=17% Similarity=0.211 Sum_probs=82.3
Q ss_pred cCCCceeehhhHHHHHHhhhc---C-------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccc
Q 000202 184 ESKDLIGVEWRIKEIESLLRT---G-------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETG 253 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~---~-------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (1866)
...+++|.+..+.++.++... . ..-.+-|.|+|.+|+||||||++++......| +.+ +...+..
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~---i~i-~g~~~~~-- 102 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPF---ITA-SGSDFVE-- 102 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCE---EEE-EGGGGTS--
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEE-ehhHHHH--
Confidence 346788988887777665431 0 01123489999999999999999998764221 222 1111110
Q ss_pred cHHHHHHHHHHHHhccccccCccchhHHHHHHHhh----cCcEEEEEecCCCH----------------HHHHHHhhccC
Q 000202 254 RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA----RKKVLIVFDDVNHP----------------RQIELLIGRLD 313 (1866)
Q Consensus 254 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~----~k~~LlVlDdv~~~----------------~~~~~l~~~~~ 313 (1866)
.. .......++..++ ..+.++++|+++.. ..+..++..+.
T Consensus 103 ~~--------------------~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 103 MF--------------------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp SC--------------------TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred hh--------------------hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhc
Confidence 00 0000111222222 23579999999521 12344444433
Q ss_pred CCC--CCCEEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhc
Q 000202 314 RFA--SGSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 314 ~~~--~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
.+. .+..||.||...+++... .....+.++..+.++-.+++..++
T Consensus 163 g~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 163 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp GCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred ccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 222 234556666666553321 124577888888888888887665
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.013 Score=67.05 Aligned_cols=51 Identities=25% Similarity=0.279 Sum_probs=34.5
Q ss_pred cCCCceeehhhHHHHHHhhhc--C--------CCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 184 ESKDLIGVEWRIKEIESLLRT--G--------SAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~--~--------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
...+++|.+....++..+... . -.-.+-+.|+|.+|+||||||+.++....
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 345677877766666554321 0 00112389999999999999999998764
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.035 Score=65.25 Aligned_cols=150 Identities=14% Similarity=0.143 Sum_probs=80.3
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
..+.|.++|.+|+|||+||+.+++.. ... ++.+. ...+.. ...... . ..+...+......
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~--~~~-----~i~v~----~~~l~~----~~~g~~--~---~~~~~~f~~a~~~ 107 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC--QAN-----FISIK----GPELLT----MWFGES--E---ANVREIFDKARQA 107 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT--TCE-----EEEEC----HHHHHH----HHHTTC--T---THHHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh--CCC-----EEEEE----hHHHHh----hhcCch--H---HHHHHHHHHHHhc
Confidence 34578999999999999999996532 111 22222 222222 221111 1 1122223333345
Q ss_pred CcEEEEEeCCCCcc----------------chhhhcCCCC--CCCCCcEEEEccCChhhh-----ccCCCCcEEEecCCC
Q 000202 1078 EKFLLLLDDVWEQI----------------DLEAVGIPVP--GSENGSKIFMASRELDVC-----RNMDVNMVVKLETLS 1134 (1866)
Q Consensus 1078 kr~LlVlDdv~~~~----------------~~~~l~~~l~--~~~~gs~IivTTR~~~v~-----~~~~~~~~~~l~~L~ 1134 (1866)
...+|+||++.... ....+...+. ....+..||.||...... +.......+.+...+
T Consensus 108 ~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~ 187 (301)
T 3cf0_A 108 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 187 (301)
T ss_dssp CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCC
T ss_pred CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcC
Confidence 67999999997410 0111211111 112345677777655332 111234678999999
Q ss_pred hHHHHHHHHHHhcCCCC--CchHHHHHHHHHHHcCCChH
Q 000202 1135 MKDAWELFCKEVGGIIQ--SPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1135 ~~~a~~Lf~~~~~~~~~--~~~~~~~~~~I~~~c~GlPL 1171 (1866)
.++-.+++......... ..++. .++..+.|.|-
T Consensus 188 ~~~r~~il~~~l~~~~~~~~~~~~----~la~~~~g~sg 222 (301)
T 3cf0_A 188 EKSRVAILKANLRKSPVAKDVDLE----FLAKMTNGFSG 222 (301)
T ss_dssp HHHHHHHHHHHHTTSCBCSSCCHH----HHHHTCSSCCH
T ss_pred HHHHHHHHHHHHccCCCCccchHH----HHHHHcCCCCH
Confidence 99988888777643321 12233 34556666653
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0079 Score=70.57 Aligned_cols=143 Identities=11% Similarity=0.050 Sum_probs=83.8
Q ss_pred HHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcc-cccccceEEEEEecC-CCCHHHHHHHHHHHhccCCCCccC
Q 000202 986 NVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPE-VKVMFHVIIWVTVSR-YWNTRKIQKQVLRQLSLHCKDRET 1063 (1866)
Q Consensus 986 ~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~ 1063 (1866)
-++.+.+.+...+.+..-++|+.|+||||+|+.+.+... ..........+..+. ...+..+ +++.+.+....
T Consensus 5 ~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~~~~~p----- 78 (305)
T 2gno_A 5 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDFLNYSP----- 78 (305)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHHHTSCC-----
T ss_pred HHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHHHhhcc-----
Confidence 345555666555566888999999999999999965210 111122234444332 2232222 23333332111
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCCh-hhhccCCCCcEEEecCCChHHHHH
Q 000202 1064 DAQVAEKLWQVLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASREL-DVCRNMDVNMVVKLETLSMKDAWE 1140 (1866)
Q Consensus 1064 ~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~~l~~L~~~~a~~ 1140 (1866)
..+++-++|+|+++. ....+.+...+......+.+|++|.+. .+....... +++++++++++..+
T Consensus 79 -----------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~ 146 (305)
T 2gno_A 79 -----------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRD 146 (305)
T ss_dssp -----------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHH
T ss_pred -----------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHH
Confidence 134567889999975 334555544443333567777766543 343333334 89999999999999
Q ss_pred HHHHHh
Q 000202 1141 LFCKEV 1146 (1866)
Q Consensus 1141 Lf~~~~ 1146 (1866)
.+.+.+
T Consensus 147 ~L~~~~ 152 (305)
T 2gno_A 147 LVKEKI 152 (305)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887766
|
| >1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0082 Score=57.82 Aligned_cols=63 Identities=11% Similarity=-0.011 Sum_probs=48.0
Q ss_pred CCccEEEccccccccCchHHHHHHHHhhCCCceEeeCCCCCCCCCchhHHHHhhhcceEEEEeccCcccchhhHHHHHHH
Q 000202 14 KMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPESLLGTIEASTISIIIFSEKYASSKWCLDELLKI 93 (1866)
Q Consensus 14 ~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~ 93 (1866)
.+|.+||||+.+|. ...|...|.+.|+... | ..|+.|.++||+.++....|.||..|+..+
T Consensus 3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVED----YRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSHH----HHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHhH----HHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 57999999999993 3333344445566433 2 568899999999999999999999998766
Q ss_pred HH
Q 000202 94 LE 95 (1866)
Q Consensus 94 ~~ 95 (1866)
.+
T Consensus 64 ~~ 65 (111)
T 1eiw_A 64 RK 65 (111)
T ss_dssp TT
T ss_pred HH
Confidence 53
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.023 Score=65.72 Aligned_cols=124 Identities=17% Similarity=0.176 Sum_probs=67.3
Q ss_pred EEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHH-hhcC
Q 000202 212 LGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKR-LARK 290 (1866)
Q Consensus 212 i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~-L~~k 290 (1866)
++|+|.+|+||||||+.++...... .+.+. ..... ........+. + ..+.+. ....
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~---~i~i~-g~~l~-~~~~~~~~~~-i-----------------~~vf~~a~~~~ 103 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLN---FISVK-GPELL-NMYVGESERA-V-----------------RQVFQRAKNSA 103 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCE---EEEEE-TTTTC-SSTTHHHHHH-H-----------------HHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCC---EEEEE-cHHHH-hhhhhHHHHH-H-----------------HHHHHHHHhcC
Confidence 9999999999999999999865432 22222 11110 0000000000 0 111111 1345
Q ss_pred cEEEEEecCCCH-------------HHHHHHhhccCCCC--CCCEEEEEccccchhccC-----ccceeeecCCCCHHHH
Q 000202 291 KVLIVFDDVNHP-------------RQIELLIGRLDRFA--SGSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADA 350 (1866)
Q Consensus 291 ~~LlVlDdv~~~-------------~~~~~l~~~~~~~~--~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea 350 (1866)
+.++++|+++.. .....+...+..+. ...-++.+|...+++... ..+..+.++..+.++-
T Consensus 104 p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r 183 (274)
T 2x8a_A 104 PCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADR 183 (274)
T ss_dssp SEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHH
T ss_pred CCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHH
Confidence 688999998641 11222333222211 233455677766654321 2356778999999988
Q ss_pred HHHHHhhc
Q 000202 351 HKLFTQCA 358 (1866)
Q Consensus 351 ~~Lf~~~a 358 (1866)
.++|..+.
T Consensus 184 ~~il~~~~ 191 (274)
T 2x8a_A 184 LAILKTIT 191 (274)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 88887665
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0038 Score=68.81 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=50.7
Q ss_pred EEEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHHHHHHHHHHhhhhhhhccCeEEEEEEccCC
Q 000202 710 RILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSEIRRAENMADLSERLLVVLDDVCD 789 (1866)
Q Consensus 710 ~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~r~LlVlddv~~ 789 (1866)
..+-|+|+.|.||||||+.+++.-. ......++++.+ +++..+...+.............+.-+|||||++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~ 126 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYVP------ELFRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGA 126 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEHH------HHHHHHHHC---CCCHHHHHHHHHSSEEEEEEECC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEhH------HHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCC
Confidence 5677999999999999999996543 223344565433 34433332221100000011112233899999976
Q ss_pred CChHHHHH--HH-HhcccCCCCCcEEEEecCC
Q 000202 790 IDDEELHN--FR-LLISNMRDSGSCFLVTTHS 818 (1866)
Q Consensus 790 ~~~~~w~~--~~-~~l~~~~~~gs~iivttr~ 818 (1866)
.....|.. +. ..+......+.++|+||..
T Consensus 127 ~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 127 EAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp C---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred CcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 43223221 22 1222111235677887764
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.012 Score=70.50 Aligned_cols=48 Identities=19% Similarity=0.309 Sum_probs=39.5
Q ss_pred CCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 185 SKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
...++|++..++.+...+..+. -+.++|.+|+|||+||+++++.....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred ccceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3579999999988888776532 58899999999999999999876443
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.085 Score=63.30 Aligned_cols=148 Identities=17% Similarity=0.199 Sum_probs=81.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+-|-++|++|.|||.||+++++... .. .+.+..+.-.+ .. .......+.+.+...-...
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~--~~---f~~v~~s~l~s--------------k~-vGese~~vr~lF~~Ar~~a 241 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTD--CK---FIRVSGAELVQ--------------KY-IGEGSRMVRELFVMAREHA 241 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHT--CE---EEEEEGGGGSC--------------SS-TTHHHHHHHHHHHHHHHTC
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhC--CC---ceEEEhHHhhc--------------cc-cchHHHHHHHHHHHHHHhC
Confidence 34578999999999999999965322 11 23344332111 00 0111111222222233457
Q ss_pred cEEEEEeCCCCcc----------c------hhhhcCCCCC--CCCCcEEEEccCChhhh-----ccCCCCcEEEecCCCh
Q 000202 1079 KFLLLLDDVWEQI----------D------LEAVGIPVPG--SENGSKIFMASRELDVC-----RNMDVNMVVKLETLSM 1135 (1866)
Q Consensus 1079 r~LlVlDdv~~~~----------~------~~~l~~~l~~--~~~gs~IivTTR~~~v~-----~~~~~~~~~~l~~L~~ 1135 (1866)
.++|++|+++... + ...+...+.+ ...+-.||.||...+.. +....+..+.+..-+.
T Consensus 242 P~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~ 321 (405)
T 4b4t_J 242 PSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSV 321 (405)
T ss_dssp SEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCH
T ss_pred CceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCH
Confidence 8999999997420 0 1112111111 22344566677765542 2224567899999999
Q ss_pred HHHHHHHHHHhcCCCCC--chHHHHHHHHHHHcCCCh
Q 000202 1136 KDAWELFCKEVGGIIQS--PDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1136 ~~a~~Lf~~~~~~~~~~--~~~~~~~~~I~~~c~GlP 1170 (1866)
++-.++|..+....... -++. .|++.+.|.-
T Consensus 322 ~~R~~Il~~~~~~~~l~~dvdl~----~lA~~t~G~S 354 (405)
T 4b4t_J 322 AARAEILRIHSRKMNLTRGINLR----KVAEKMNGCS 354 (405)
T ss_dssp HHHHHHHHHHHTTSBCCSSCCHH----HHHHHCCSCC
T ss_pred HHHHHHHHHHhcCCCCCccCCHH----HHHHHCCCCC
Confidence 99999998777554322 2343 4667777754
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.026 Score=65.64 Aligned_cols=52 Identities=25% Similarity=0.233 Sum_probs=36.3
Q ss_pred ccCCCceeehhhHHHHHHhhhcC---------C-CCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 183 SESKDLIGVEWRIKEIESLLRTG---------S-AGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~---------~-~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
...++++|.+...+++..+...- + .-.+-+.|+|.+|+||||||+.++....
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 34457888887777766544310 0 0112389999999999999999998764
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.03 Score=69.53 Aligned_cols=172 Identities=15% Similarity=0.178 Sum_probs=90.6
Q ss_pred ccccchhhHHHHHHHHHhccC---------CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHH
Q 000202 977 VTAVNYTQRNVRKIFRYVNDV---------TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQ 1047 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 1047 (1866)
+.|...-.+++.+++..+... ..+-|.++|++|+|||+||+.+.+.. ... .+.++.+.-...
T Consensus 18 i~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~--~~~---f~~is~~~~~~~---- 88 (476)
T 2ce7_A 18 VGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA--NVP---FFHISGSDFVEL---- 88 (476)
T ss_dssp CCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH--TCC---EEEEEGGGTTTC----
T ss_pred hCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc--CCC---eeeCCHHHHHHH----
Confidence 333333344555555555321 12348899999999999999996532 111 223333321110
Q ss_pred HHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc----------------cchhhhcCCCC--CCCCCcEE
Q 000202 1048 KQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ----------------IDLEAVGIPVP--GSENGSKI 1109 (1866)
Q Consensus 1048 ~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~----------------~~~~~l~~~l~--~~~~gs~I 1109 (1866)
. ...........+.....+..++|+||++... .....+...+. ....+-.|
T Consensus 89 ----------~-~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viV 157 (476)
T 2ce7_A 89 ----------F-VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIV 157 (476)
T ss_dssp ----------C-TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEE
T ss_pred ----------H-hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEE
Confidence 0 0001122223344445567899999999541 01122221111 11235567
Q ss_pred EEccCChhhhcc-----CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh
Q 000202 1110 FMASRELDVCRN-----MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1110 ivTTR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 1170 (1866)
|.||...+.... ...+..+.+...+.++-.+++..++......++.. ...|++.+.|..
T Consensus 158 IaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~--l~~la~~t~G~s 221 (476)
T 2ce7_A 158 MAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN--LEIIAKRTPGFV 221 (476)
T ss_dssp EEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC--HHHHHHTCTTCC
T ss_pred EEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh--HHHHHHhcCCCc
Confidence 777776654221 12345788898888888888877765432222110 233677788876
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.028 Score=68.53 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.2
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..+.++|.+|+|||++|+++++...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999998763
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0037 Score=64.72 Aligned_cols=40 Identities=15% Similarity=0.301 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHh---ccCCccEEEEEcCCCchHHHHHHHHhcC
Q 000202 982 YTQRNVRKIFRYV---NDVTASKIGVYGVGGIGKTAALKALISY 1022 (1866)
Q Consensus 982 ~~~~~~~~i~~~l---~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 1022 (1866)
|....+.++.+.+ .... .-|.|+|..|+|||++|+.+++.
T Consensus 5 G~s~~~~~~~~~~~~~a~~~-~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 5 GRSEWINQYRRRLQQLSETD-IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSSHHHHHHHHHHHHHTTCC-SCEEEESSTTSSHHHHHHHHHHS
T ss_pred eCCHHHHHHHHHHHHHhCCC-CCEEEECCCCCCHHHHHHHHHHh
Confidence 4444455555444 2233 34679999999999999999764
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.02 Score=71.77 Aligned_cols=147 Identities=11% Similarity=0.093 Sum_probs=75.5
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCc---cccccc-ce-EEEEEecCCCCHHHHHHHHHHH
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYP---EVKVMF-HV-IIWVTVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~---~~~~~F-~~-~~wv~vs~~~~~~~~~~~i~~~ 1053 (1866)
.++|++++++.++..+......-+.++|.+|+|||++|+.+++.- .+.... +. .+.++.+ ..
T Consensus 181 ~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------------~~ 247 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------------TK 247 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------------
T ss_pred CccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------cc
Confidence 467888999999998866555667899999999999999995431 111111 11 1122222 00
Q ss_pred hccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChh------hhcc-CCCCc
Q 000202 1054 LSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELD------VCRN-MDVNM 1126 (1866)
Q Consensus 1054 l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~------v~~~-~~~~~ 1126 (1866)
..+. .......+. ...-.....+|++| -..+....+...+.. ..-++|.+|.... +-.. ..-..
T Consensus 248 ~~g~--~e~~~~~~~---~~~~~~~~~iLfiD--~~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~~Rf~ 318 (468)
T 3pxg_A 248 YRGE--FEDRLKKVM---DEIRQAGNIILFID--AAIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALERRFQ 318 (468)
T ss_dssp -------CTTHHHHH---HHHHTCCCCEEEEC--C--------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHHSEE
T ss_pred ccch--HHHHHHHHH---HHHHhcCCeEEEEe--CchhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHHHhCc
Confidence 0000 011112222 22223567889999 222222334443332 1245555554433 1000 00113
Q ss_pred EEEecCCChHHHHHHHHHHhc
Q 000202 1127 VVKLETLSMKDAWELFCKEVG 1147 (1866)
Q Consensus 1127 ~~~l~~L~~~~a~~Lf~~~~~ 1147 (1866)
++.+...+.++..+++...+.
T Consensus 319 ~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 319 PIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp EEECCCCCHHHHHHHHHHTTT
T ss_pred cceeCCCCHHHHHHHHHHHHH
Confidence 689999999999999986553
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.067 Score=65.31 Aligned_cols=148 Identities=20% Similarity=0.177 Sum_probs=80.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+-|.++|++|.|||+||+++++.... . .+.+..+.-.+ .. .......+.......-...
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~~--~---~~~v~~s~l~s--------------k~-~Gese~~ir~~F~~A~~~~ 274 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIGA--N---FIFSPASGIVD--------------KY-IGESARIIREMFAYAKEHE 274 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTC--E---EEEEEGGGTCC--------------SS-SSHHHHHHHHHHHHHHHSC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCC--C---EEEEehhhhcc--------------cc-chHHHHHHHHHHHHHHhcC
Confidence 456889999999999999999653221 1 22334332111 00 0111111122222233467
Q ss_pred cEEEEEeCCCCcc--------c--------hhhhcCCCC--CCCCCcEEEEccCChhhhcc-----CCCCcEEEecCCCh
Q 000202 1079 KFLLLLDDVWEQI--------D--------LEAVGIPVP--GSENGSKIFMASRELDVCRN-----MDVNMVVKLETLSM 1135 (1866)
Q Consensus 1079 r~LlVlDdv~~~~--------~--------~~~l~~~l~--~~~~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~ 1135 (1866)
.++|++|+++... . ...+...+. ....+..||.||...+.... ...+..+.+...+.
T Consensus 275 P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~ 354 (437)
T 4b4t_L 275 PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNE 354 (437)
T ss_dssp SEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCH
T ss_pred CceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCH
Confidence 8999999997410 0 111221111 12234567778876654322 12356788888888
Q ss_pred HHHHHHHHHHhcCCCC--CchHHHHHHHHHHHcCCCh
Q 000202 1136 KDAWELFCKEVGGIIQ--SPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1136 ~~a~~Lf~~~~~~~~~--~~~~~~~~~~I~~~c~GlP 1170 (1866)
++-.++|..+...... ..++. .+++.+.|.-
T Consensus 355 ~~R~~Il~~~~~~~~~~~d~dl~----~lA~~t~G~s 387 (437)
T 4b4t_L 355 AGRLEIFKIHTAKVKKTGEFDFE----AAVKMSDGFN 387 (437)
T ss_dssp HHHHHHHHHHHHTSCBCSCCCHH----HHHHTCCSCC
T ss_pred HHHHHHHHHHhcCCCCCcccCHH----HHHHhCCCCC
Confidence 8888898877654322 22343 4666777754
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.099 Score=66.70 Aligned_cols=51 Identities=27% Similarity=0.323 Sum_probs=36.4
Q ss_pred CceeehhhHHHHHHhhhc----CCCCcEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 187 DLIGVEWRIKEIESLLRT----GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~----~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
+.+|.+...+.+.+.+.. .......+.++|.+|+||||||+.++......|
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 478887777666554331 111345799999999999999999998765443
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.023 Score=77.22 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=36.0
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhc
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.++|+++++..++..+.....+.+.++|.+|+||||+|+.+.+
T Consensus 171 ~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHH
Confidence 4678889999999988665555678999999999999999965
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.15 Score=62.13 Aligned_cols=149 Identities=15% Similarity=0.145 Sum_probs=81.0
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
..+-|.++|++|.|||.||+++++... .. .+.+..+.-. ... .......+...+...-..
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~--~~---fi~vs~s~L~--------------sk~-vGesek~ir~lF~~Ar~~ 301 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTD--AT---FIRVIGSELV--------------QKY-VGEGARMVRELFEMARTK 301 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHT--CE---EEEEEGGGGC--------------CCS-SSHHHHHHHHHHHHHHHT
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccC--CC---eEEEEhHHhh--------------ccc-CCHHHHHHHHHHHHHHhc
Confidence 345688999999999999999965322 11 2233333211 000 011111122222233346
Q ss_pred CcEEEEEeCCCCcc--------c--------hhhhcCCCC--CCCCCcEEEEccCChhhh-----ccCCCCcEEEecCCC
Q 000202 1078 EKFLLLLDDVWEQI--------D--------LEAVGIPVP--GSENGSKIFMASRELDVC-----RNMDVNMVVKLETLS 1134 (1866)
Q Consensus 1078 kr~LlVlDdv~~~~--------~--------~~~l~~~l~--~~~~gs~IivTTR~~~v~-----~~~~~~~~~~l~~L~ 1134 (1866)
..++|++|+++... . ...+...+. ....+-.||.||...+.. +....+..+.+...+
T Consensus 302 aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd 381 (467)
T 4b4t_H 302 KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPD 381 (467)
T ss_dssp CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCC
T ss_pred CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcC
Confidence 78999999997420 0 011111111 112334556677655442 222356788999999
Q ss_pred hHHHHHHHHHHhcCCCCC--chHHHHHHHHHHHcCCCh
Q 000202 1135 MKDAWELFCKEVGGIIQS--PDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1135 ~~~a~~Lf~~~~~~~~~~--~~~~~~~~~I~~~c~GlP 1170 (1866)
.++-.++|..+....... -++ ..|++.|.|.-
T Consensus 382 ~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 382 LEGRANIFRIHSKSMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp HHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCC
T ss_pred HHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCC
Confidence 999999998777554322 233 34667777753
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.092 Score=64.04 Aligned_cols=147 Identities=11% Similarity=0.143 Sum_probs=77.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHH-HHhCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLW-QVLNG 1077 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~L~~ 1077 (1866)
.+-|-++|++|.|||.||+++++... . ..+.++.+.-. ... ....+.....+. ..-..
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~--~---~f~~v~~s~l~--------------~~~--vGese~~ir~lF~~A~~~ 273 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTN--A---TFLKLAAPQLV--------------QMY--IGEGAKLVRDAFALAKEK 273 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT--C---EEEEEEGGGGC--------------SSC--SSHHHHHHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhC--C---CEEEEehhhhh--------------hcc--cchHHHHHHHHHHHHHhc
Confidence 45688999999999999999965321 1 12233333210 000 111111122222 22234
Q ss_pred CcEEEEEeCCCCc-------c-----c----hhhhcCCCCC--CCCCcEEEEccCChhhhcc-----CCCCcEEEecCCC
Q 000202 1078 EKFLLLLDDVWEQ-------I-----D----LEAVGIPVPG--SENGSKIFMASRELDVCRN-----MDVNMVVKLETLS 1134 (1866)
Q Consensus 1078 kr~LlVlDdv~~~-------~-----~----~~~l~~~l~~--~~~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~ 1134 (1866)
..++|++|+++.. . . ...+...+.+ ...+-.||.||...+.... ...+..+.+...+
T Consensus 274 aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd 353 (434)
T 4b4t_M 274 APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPS 353 (434)
T ss_dssp CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCC
T ss_pred CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcC
Confidence 6799999998631 0 0 1112222221 1234456667776654322 1335678898889
Q ss_pred hHHHHHHHHHHhcCCC--CCchHHHHHHHHHHHcCCCh
Q 000202 1135 MKDAWELFCKEVGGII--QSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1135 ~~~a~~Lf~~~~~~~~--~~~~~~~~~~~I~~~c~GlP 1170 (1866)
.++-.++|..+..... ..-++. .|++.+.|.-
T Consensus 354 ~~~R~~Il~~~~~~~~~~~dvdl~----~lA~~t~G~s 387 (434)
T 4b4t_M 354 EDSRAQILQIHSRKMTTDDDINWQ----ELARSTDEFN 387 (434)
T ss_dssp HHHHHHHHHHHHHHSCBCSCCCHH----HHHHHCSSCC
T ss_pred HHHHHHHHHHHhcCCCCCCcCCHH----HHHHhCCCCC
Confidence 8888888876654322 222333 4666777753
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.041 Score=56.58 Aligned_cols=110 Identities=11% Similarity=0.126 Sum_probs=61.7
Q ss_pred ccccchhhHHHHHHHhhhhhhccCCceEEEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHHHH
Q 000202 683 DLAVSERDLVHFINKVNYELLRDVNMVRILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAIAV 762 (1866)
Q Consensus 683 ~~~g~~~d~~~li~~l~~~~~~~~~~l~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i~~ 762 (1866)
.++|......++...+..-.. ....| =|+|..|.|||++|+.+++... -++.++..--..+....++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~---~~~~v-ll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~~~~~~~~~~~ 72 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK---RTSPV-FLTGEAGSPFETVARYFHKNGT--------PWVSPARVEYLIDMPMELLQ 72 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT---CSSCE-EEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTHHHHCHHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhC---CCCcE-EEECCCCccHHHHHHHHHHhCC--------CeEEechhhCChHhhhhHHH
Confidence 356776666666665543221 12344 4899999999999999987543 23333322111111111111
Q ss_pred HHHHHHhhhhhhhccCeEEEEEEccCCCChHHHHHHHHhcccCCCCCcEEEEecC
Q 000202 763 QFSEIRRAENMADLSERLLVVLDDVCDIDDEELHNFRLLISNMRDSGSCFLVTTH 817 (1866)
Q Consensus 763 ~~~~~~~~~~~~~~~~r~LlVlddv~~~~~~~w~~~~~~l~~~~~~gs~iivttr 817 (1866)
. .+.-.++||++-.........+...+......+.+||.||.
T Consensus 73 ~-------------a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 73 K-------------AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp H-------------TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred h-------------CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 1 12236789999887766666676666542234567777775
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.13 Score=58.70 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=75.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCc
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEK 1079 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 1079 (1866)
+-|.|+|..|+||||||+.+++.. ... .+.++.+.-.+ .. ...........+........
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~--~~~---~~~i~~~~~~~--------------~~-~~~~~~~~~~~~~~a~~~~~ 105 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA--KVP---FFTISGSDFVE--------------MF-VGVGASRVRDMFEQAKKAAP 105 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH--TCC---EEEECSCSSTT--------------SC-CCCCHHHHHHHHHHHHTTCS
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc--CCC---EEEEeHHHHHH--------------Hh-hhhhHHHHHHHHHHHHHcCC
Confidence 358899999999999999996532 111 23332221100 00 01112222333333445567
Q ss_pred EEEEEeCCCCcc----------------chhhhcCCCC--CCCCCcEEEEccCChhhh-cc----CCCCcEEEecCCChH
Q 000202 1080 FLLLLDDVWEQI----------------DLEAVGIPVP--GSENGSKIFMASRELDVC-RN----MDVNMVVKLETLSMK 1136 (1866)
Q Consensus 1080 ~LlVlDdv~~~~----------------~~~~l~~~l~--~~~~gs~IivTTR~~~v~-~~----~~~~~~~~l~~L~~~ 1136 (1866)
.++++|++.... ....+...+. ....+..||.||...... .. ...+..+.+...+.+
T Consensus 106 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~ 185 (257)
T 1lv7_A 106 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 185 (257)
T ss_dssp EEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHH
T ss_pred eeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHH
Confidence 899999984210 0111111111 112345666677654421 11 123457788888888
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHcCC-ChH
Q 000202 1137 DAWELFCKEVGGIIQSPDIHLYARAIVKGCCG-LPL 1171 (1866)
Q Consensus 1137 ~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~G-lPL 1171 (1866)
+-.+++..........++. ....++..+.| .+-
T Consensus 186 ~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~ 219 (257)
T 1lv7_A 186 GREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGA 219 (257)
T ss_dssp HHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHH
T ss_pred HHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHH
Confidence 8888887765433211111 12335666677 443
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.18 Score=60.71 Aligned_cols=147 Identities=11% Similarity=0.147 Sum_probs=78.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHH-HHHhCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKL-WQVLNG 1077 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~L~~ 1077 (1866)
.+=|-++|++|.|||.||+++++... .. .+.++.+.- ... .....+.....+ ...-..
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~--~~---fi~v~~s~l--------------~sk--~vGesek~ir~lF~~Ar~~ 274 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTS--AT---FLRIVGSEL--------------IQK--YLGDGPRLCRQIFKVAGEN 274 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHT--CE---EEEEESGGG--------------CCS--SSSHHHHHHHHHHHHHHHT
T ss_pred CCCCceECCCCchHHHHHHHHHHHhC--CC---EEEEEHHHh--------------hhc--cCchHHHHHHHHHHHHHhc
Confidence 45688999999999999999965322 11 223332221 000 011111222222 222245
Q ss_pred CcEEEEEeCCCCcc------------c----hhhhcCCCC--CCCCCcEEEEccCChhhhcc-----CCCCcEEEecCCC
Q 000202 1078 EKFLLLLDDVWEQI------------D----LEAVGIPVP--GSENGSKIFMASRELDVCRN-----MDVNMVVKLETLS 1134 (1866)
Q Consensus 1078 kr~LlVlDdv~~~~------------~----~~~l~~~l~--~~~~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~ 1134 (1866)
..++|++|+++... . ...+...+. ....+-.||.||...+.... ...+..+.+..-+
T Consensus 275 aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd 354 (437)
T 4b4t_I 275 APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPD 354 (437)
T ss_dssp CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCC
T ss_pred CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcC
Confidence 68999999987310 0 111111111 12234456677776655322 1234578888888
Q ss_pred hHHHHHHHHHHhcCCCC--CchHHHHHHHHHHHcCCCh
Q 000202 1135 MKDAWELFCKEVGGIIQ--SPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1135 ~~~a~~Lf~~~~~~~~~--~~~~~~~~~~I~~~c~GlP 1170 (1866)
.++-.++|..+...... ..++. .|++.+.|.-
T Consensus 355 ~~~R~~Il~~~l~~~~l~~dvdl~----~LA~~T~GfS 388 (437)
T 4b4t_I 355 LSTKKKILGIHTSKMNLSEDVNLE----TLVTTKDDLS 388 (437)
T ss_dssp HHHHHHHHHHHHTTSCBCSCCCHH----HHHHHCCSCC
T ss_pred HHHHHHHHHHHhcCCCCCCcCCHH----HHHHhCCCCC
Confidence 88888999877754432 22343 4566676653
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.23 Score=60.47 Aligned_cols=148 Identities=17% Similarity=0.225 Sum_probs=74.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+-|.++|++|+|||+||+++++... .. .+.+..+.-.+ .. .......+...+...-...
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~--~~---~~~v~~~~l~~--------------~~-~Ge~e~~ir~lF~~A~~~a 265 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTK--AA---FIRVNGSEFVH--------------KY-LGEGPRMVRDVFRLARENA 265 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHT--CE---EEEEEGGGTCC--------------SS-CSHHHHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC--CC---eEEEecchhhc--------------cc-cchhHHHHHHHHHHHHHcC
Confidence 45588999999999999999965322 11 22334332111 00 0111111222222233456
Q ss_pred cEEEEEeCCCCc--------c----c----hhhhcCCCC--CCCCCcEEEEccCChhhh-----ccCCCCcEEEecCCC-
Q 000202 1079 KFLLLLDDVWEQ--------I----D----LEAVGIPVP--GSENGSKIFMASRELDVC-----RNMDVNMVVKLETLS- 1134 (1866)
Q Consensus 1079 r~LlVlDdv~~~--------~----~----~~~l~~~l~--~~~~gs~IivTTR~~~v~-----~~~~~~~~~~l~~L~- 1134 (1866)
.++|++|+++.. . . ...+...+. ....|-.||.||...+.. +....+..+.+..+.
T Consensus 266 P~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd 345 (428)
T 4b4t_K 266 PSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRD 345 (428)
T ss_dssp SEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCC
T ss_pred CCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCC
Confidence 899999998621 0 0 111111111 122344566777765432 222334567786664
Q ss_pred hHHHHHHHHHHhcCCCC--CchHHHHHHHHHHHcCCCh
Q 000202 1135 MKDAWELFCKEVGGIIQ--SPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1135 ~~~a~~Lf~~~~~~~~~--~~~~~~~~~~I~~~c~GlP 1170 (1866)
.++-..+|..+...... .-++. .+++.+.|.-
T Consensus 346 ~~~R~~Il~~~~~~~~l~~~~dl~----~lA~~t~G~s 379 (428)
T 4b4t_K 346 RRERRLIFGTIASKMSLAPEADLD----SLIIRNDSLS 379 (428)
T ss_dssp HHHHHHHHHHHHHSSCBCTTCCHH----HHHHHTTTCC
T ss_pred HHHHHHHHHHHhcCCCCCcccCHH----HHHHHCCCCC
Confidence 45555666665543322 22343 4566677653
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.15 Score=63.82 Aligned_cols=148 Identities=11% Similarity=0.128 Sum_probs=79.4
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
...-|.|+|.+|+|||++|+++.+.. .. ..+.++.+ . +. .... ..........+.....+
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~--~~---~fv~vn~~------~----l~----~~~~-g~~~~~~~~~f~~A~~~ 296 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANET--GA---FFFLINGP------E----IM----SKLA-GESESNLRKAFEEAEKN 296 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHC--SS---EEEEEEHH------H----HH----TSCT-THHHHHHHHHHHHHHHT
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHh--CC---CEEEEEch------H----hh----hhhc-chhHHHHHHHHHHHHhc
Confidence 34568899999999999999995432 21 12233321 1 11 1000 11112223334444456
Q ss_pred CcEEEEEeCCCCc--------c-----chhhhcCCCC--CCCCCcEEEEccCChhh-----hccCCCCcEEEecCCChHH
Q 000202 1078 EKFLLLLDDVWEQ--------I-----DLEAVGIPVP--GSENGSKIFMASRELDV-----CRNMDVNMVVKLETLSMKD 1137 (1866)
Q Consensus 1078 kr~LlVlDdv~~~--------~-----~~~~l~~~l~--~~~~gs~IivTTR~~~v-----~~~~~~~~~~~l~~L~~~~ 1137 (1866)
+..+|+||+++.. . ....+...+. ....+-+||.||..... .+.......+.+...+.++
T Consensus 297 ~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~e 376 (489)
T 3hu3_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (489)
T ss_dssp CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHH
T ss_pred CCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHH
Confidence 7899999999421 0 0111211111 11234456666665432 2212334578999999999
Q ss_pred HHHHHHHHhcCCCC--CchHHHHHHHHHHHcCCC
Q 000202 1138 AWELFCKEVGGIIQ--SPDIHLYARAIVKGCCGL 1169 (1866)
Q Consensus 1138 a~~Lf~~~~~~~~~--~~~~~~~~~~I~~~c~Gl 1169 (1866)
-.+++..++..... ..++ ..+++.+.|.
T Consensus 377 R~~IL~~~~~~~~l~~~~~l----~~la~~t~g~ 406 (489)
T 3hu3_A 377 RLEILQIHTKNMKLADDVDL----EQVANETHGH 406 (489)
T ss_dssp HHHHHHHHTTTSCBCTTCCH----HHHHHTCTTC
T ss_pred HHHHHHHHHhcCCCcchhhH----HHHHHHccCC
Confidence 99999888754322 2223 3466667775
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.011 Score=68.31 Aligned_cols=68 Identities=16% Similarity=0.145 Sum_probs=44.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEe--cCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTV--SRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
+++.|+|++|+||||||.++... .-..++|++. .+..+. ...+.+.....+.+.+..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~----------------~~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG----------------YNTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT----------------CBCCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh----------------hhcCHHHHHHHHHHHHhh
Confidence 46789999999999999999653 1123456666 332111 003445555666666666
Q ss_pred CcEEEEEeCCCC
Q 000202 1078 EKFLLLLDDVWE 1089 (1866)
Q Consensus 1078 kr~LlVlDdv~~ 1089 (1866)
.+ +||+|++..
T Consensus 183 ~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 HR-VIVIDSLKN 193 (331)
T ss_dssp CS-EEEEECCTT
T ss_pred CC-EEEEecccc
Confidence 66 999999854
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.11 Score=69.91 Aligned_cols=152 Identities=13% Similarity=0.164 Sum_probs=84.6
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcc---ccc-ccceEEEE-EecCCCCHHHHHHHHHHH
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPE---VKV-MFHVIIWV-TVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~---~~~-~F~~~~wv-~vs~~~~~~~~~~~i~~~ 1053 (1866)
.++|++++++.+++.+......-+.++|.+|+||||+|+.+.+.-. +.. .....++. ..+. +
T Consensus 187 ~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------l------- 253 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------L------- 253 (758)
T ss_dssp CCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---------------
T ss_pred CccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------H-------
Confidence 4678889999999998766666788999999999999999964211 111 12333321 1111 0
Q ss_pred hccCCCCccCHHHHHHHHHHHh-CCCcEEEEEeCCCCc----------cc-hhhhcCCCCCCCCCcEEEEccCChhhhcc
Q 000202 1054 LSLHCKDRETDAQVAEKLWQVL-NGEKFLLLLDDVWEQ----------ID-LEAVGIPVPGSENGSKIFMASRELDVCRN 1121 (1866)
Q Consensus 1054 l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~----------~~-~~~l~~~l~~~~~gs~IivTTR~~~v~~~ 1121 (1866)
+. ........+.....+.+.+ ..+..+|++|++... .+ ...+...+.. .+-.+|.+|........
T Consensus 254 ~~-~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~at~~~~~~~~ 330 (758)
T 1r6b_X 254 LA-GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSNI 330 (758)
T ss_dssp -C-CCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEECHHHHHCC
T ss_pred hc-cccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEEEeCchHHhhh
Confidence 00 0111222333333333444 345789999999743 11 2223333322 23456666654332111
Q ss_pred CC-------CCcEEEecCCChHHHHHHHHHHh
Q 000202 1122 MD-------VNMVVKLETLSMKDAWELFCKEV 1146 (1866)
Q Consensus 1122 ~~-------~~~~~~l~~L~~~~a~~Lf~~~~ 1146 (1866)
.. -...+.+...+.++..+++...+
T Consensus 331 ~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 10 11368899999999888886543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.29 Score=58.31 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=35.2
Q ss_pred cEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000202 1126 MVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1126 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
..+.+++.+.++-.+++.+.+......- ..+.+..|++.+.|.|-.+..+
T Consensus 173 l~~~Ld~~~~~~l~~iL~~~~~~~~~~~-~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 173 IILELDFYTVKELKEIIKRAASLMDVEI-EDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTCCB-CHHHHHHHHHTSTTCHHHHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHhcCCChHHHHHH
Confidence 4688999999999999987663221111 1345778999999999655433
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.032 Score=64.51 Aligned_cols=34 Identities=21% Similarity=0.079 Sum_probs=25.9
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEe
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACN 245 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 245 (1866)
.+++.|+|++|+||||||.+++.. .-..+.|+..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 456789999999999999999886 2223456654
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.017 Score=59.97 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=50.6
Q ss_pred eEEEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHHHHHHHHHHhhhhhhhccCeEEEEEEccC
Q 000202 709 VRILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSEIRRAENMADLSERLLVVLDDVC 788 (1866)
Q Consensus 709 l~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~r~LlVlddv~ 788 (1866)
-.++.|+|+.|.|||||++.+.+..... .+ ..+++...+-.+. ....+.-++||||+-
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~~~~~--------------------~~~~~~~lLilDE~~ 93 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAASMPLT--------------------DAAFEAEYLAVDQVE 93 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTTSCCC--------------------GGGGGCSEEEEESTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHHhhHH--------------------HHHhCCCEEEEeCcc
Confidence 3578899999999999999998654321 11 2455544332221 011234588899997
Q ss_pred CCChHHHHHHHHhcccCCCCC-cEEEEecC
Q 000202 789 DIDDEELHNFRLLISNMRDSG-SCFLVTTH 817 (1866)
Q Consensus 789 ~~~~~~w~~~~~~l~~~~~~g-s~iivttr 817 (1866)
..+...-+.+...+.....+| ++||+||+
T Consensus 94 ~~~~~~~~~l~~li~~~~~~g~~~iiits~ 123 (149)
T 2kjq_A 94 KLGNEEQALLFSIFNRFRNSGKGFLLLGSE 123 (149)
T ss_dssp CCCSHHHHHHHHHHHHHHHHTCCEEEEEES
T ss_pred ccChHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 655433334444433222233 34888876
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.017 Score=63.92 Aligned_cols=109 Identities=17% Similarity=0.013 Sum_probs=58.2
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
-.++.|+|..|+||||++..++++...+-..+.++....... . ..++.+.++......... ....+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~------~~~i~srlG~~~~~~~~~--~~~~i~~~i~ 82 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-S------IRNIQSRTGTSLPSVEVE--SAPEILNYIM 82 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-G------CSSCCCCCCCSSCCEEES--STHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-H------HHHHHHhcCCCccccccC--CHHHHHHHHH
Confidence 458899999999999999999998766544444442111100 0 011122221111100111 1122333332
Q ss_pred ----cC-cEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 289 ----RK-KVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 289 ----~k-~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
+. .-+||+|.+.. .++++.+....+ .|-.||+|.++.+
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDKN 127 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSBC
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEecccc
Confidence 23 44999999863 445554433221 2788999999654
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.014 Score=67.56 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 000202 1001 KIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1001 vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
-|.++|.+|+|||+||+.+++
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 377999999999999999965
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.07 Score=62.74 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=33.7
Q ss_pred hHHHHHHhhhcCCC-CcEEEEEEecCCCchhHHHHHHHHhhh-ccccceEEE
Q 000202 194 RIKEIESLLRTGSA-GVYKLGIWGIGGIGKTTIAGAVFNKIS-RHFEGSYFA 243 (1866)
Q Consensus 194 ~l~~l~~~L~~~~~-~~~~i~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~ 243 (1866)
.++.+.+++..... ....+.|+|.+|+|||+||.++++... ..-..+.|+
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 34445556654222 246789999999999999999999766 443334444
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.12 Score=57.50 Aligned_cols=85 Identities=15% Similarity=0.163 Sum_probs=51.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc-----------cCC-CCccCHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS-----------LHC-KDRETDAQ 1066 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~-----------~~~-~~~~~~~~ 1066 (1866)
-.++.|+|.+|+|||||+..+.. ..-..++|++....++...+.+ +.+.++ ... .......+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 35899999999999999999965 1224677888766556555443 222221 111 11112233
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCC
Q 000202 1067 VAEKLWQVLNGEKFLLLLDDVWE 1089 (1866)
Q Consensus 1067 ~~~~l~~~L~~kr~LlVlDdv~~ 1089 (1866)
....++..+..+.-+||+|.+..
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 44445555544567899998754
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.064 Score=60.25 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=26.1
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEE
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 243 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (1866)
-.+++|.|.+|+|||||++.++......-..+.|+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 35899999999999999999997554332334444
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.035 Score=65.66 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhc
Q 000202 1000 SKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
..+.++|..|+||||+|+.+++
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4789999999999999999955
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.047 Score=60.75 Aligned_cols=45 Identities=24% Similarity=0.107 Sum_probs=30.2
Q ss_pred HHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 197 EIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 197 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
.|..++..+-..-.+++|.|.+|+||||||..++. . .-..++|+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence 34444432222345899999999999999999987 2 223455654
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.57 Score=61.62 Aligned_cols=172 Identities=10% Similarity=0.174 Sum_probs=91.8
Q ss_pred CcccccchhhHHHHHHHHH-hcc---------CCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHH
Q 000202 975 SNVTAVNYTQRNVRKIFRY-VND---------VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTR 1044 (1866)
Q Consensus 975 ~~~~~~~~~~~~~~~i~~~-l~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 1044 (1866)
.++.|...-.+++.+++.+ +.. ...+-|.++|++|+|||+||+++++.... + .+.|+.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~--~---~~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA--F---FFLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC--E---EEEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--e---EEEEEhHH-----
Confidence 4444555445566665554 311 22356889999999999999999654322 1 23333221
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCcc--------c-----hhhhcCCCCC--CCCCcEE
Q 000202 1045 KIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQI--------D-----LEAVGIPVPG--SENGSKI 1109 (1866)
Q Consensus 1045 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--------~-----~~~l~~~l~~--~~~gs~I 1109 (1866)
+. .. ........+...+....+...++|+||+++... + ...+...+.. ...+-.|
T Consensus 274 -----l~----sk-~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 274 -----IM----SK-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp -----HH----SS-CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred -----hh----cc-cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 11 11 111122223333344446678999999996410 0 1111111111 1123345
Q ss_pred EEccCChhhh-----ccCCCCcEEEecCCChHHHHHHHHHHhcCCC--CCchHHHHHHHHHHHcCCCh
Q 000202 1110 FMASRELDVC-----RNMDVNMVVKLETLSMKDAWELFCKEVGGII--QSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1110 ivTTR~~~v~-----~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~--~~~~~~~~~~~I~~~c~GlP 1170 (1866)
|.||...+.. +....+..+++...+.++-.++|..+..... ...++ ..|++++.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl----~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCH----HHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhcCCCC
Confidence 5566554332 1113456889999999999999987665432 12233 34677787764
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.09 Score=56.34 Aligned_cols=115 Identities=17% Similarity=0.079 Sum_probs=58.1
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHh--ccccccCccc------h---
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLL--NDRNVKNFQN------I--- 278 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~--~~~~~~~~~~------~--- 278 (1866)
..|.|++-.|.||||+|...+-+...+=-.+.++.-.... .......+.+.+.-.+. +..-...... .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 3577777788999999999998766554444554322210 01111233333200000 0000000000 0
Q ss_pred hHHHHHHHhhcCcE-EEEEecCC--------CHHHHHHHhhccCCCCCCCEEEEEcccc
Q 000202 279 SVNFQSKRLARKKV-LIVFDDVN--------HPRQIELLIGRLDRFASGSQVIITTRDK 328 (1866)
Q Consensus 279 ~~~~l~~~L~~k~~-LlVlDdv~--------~~~~~~~l~~~~~~~~~gs~IiiTTR~~ 328 (1866)
.-...++.+...+| |||||++. +.+.+-.++.. -.....||||+|+.
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~---Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA---RPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT---SCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh---CcCCCEEEEECCCC
Confidence 00344455555544 99999983 23333333332 24567899999987
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=93.66 E-value=0.081 Score=64.63 Aligned_cols=31 Identities=29% Similarity=0.628 Sum_probs=25.2
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhccccceE
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISRHFEGSY 241 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~ 241 (1866)
.++|+|.+|+|||||+..+......++...+
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 5899999999999999999987665554333
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.25 Score=56.20 Aligned_cols=146 Identities=14% Similarity=0.177 Sum_probs=73.0
Q ss_pred EEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHh-CCCcE
Q 000202 1002 IGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVL-NGEKF 1080 (1866)
Q Consensus 1002 i~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~ 1080 (1866)
+.|+|..|+||||||+.++.... ...+.+... .+... . ..........+.+.. .....
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~------~~~~~--------~--~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS------DFVEM--------F--VGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH------HHHHS--------C--TTHHHHHHHHHHHHHTTSSSE
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHH------HHHHH--------H--hhHHHHHHHHHHHHHHhcCCe
Confidence 88999999999999999965322 122233211 11100 0 000111122222332 34568
Q ss_pred EEEEeCCCCc------------cc----hhhhcCCCCCCC--CCcEEEEccCChhhhcc-----CCCCcEEEecCCChHH
Q 000202 1081 LLLLDDVWEQ------------ID----LEAVGIPVPGSE--NGSKIFMASRELDVCRN-----MDVNMVVKLETLSMKD 1137 (1866)
Q Consensus 1081 LlVlDdv~~~------------~~----~~~l~~~l~~~~--~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~~ 1137 (1866)
++++|++... .. ...+...+..+. ....++.||...++... ...+..+.+...+.++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 190 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHH
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHH
Confidence 9999999421 01 112221222222 22344456666555221 2345678899889888
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh
Q 000202 1138 AWELFCKEVGGIIQSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1138 a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 1170 (1866)
-.+++...+......++. ....+++.+.|.-
T Consensus 191 r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 221 (254)
T 1ixz_A 191 REQILRIHARGKPLAEDV--DLALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HHHHHHHHHcCCCCCccc--CHHHHHHHcCCCC
Confidence 888887665433211110 0223566666643
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=93.55 E-value=0.47 Score=50.57 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.3
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.++|+|..|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998553
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=93.46 E-value=0.022 Score=61.48 Aligned_cols=25 Identities=24% Similarity=-0.098 Sum_probs=21.3
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.++.|+|..|+||||++..++++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999988877654
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.32 Score=60.75 Aligned_cols=169 Identities=12% Similarity=0.202 Sum_probs=86.8
Q ss_pred cccccchhhHHHHHHHHHhccC---------CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHH
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDV---------TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKI 1046 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 1046 (1866)
++.|...-..+++++...+... -.+-|.|+|.+|+||||||+.++.... ...+.++.+.-.+.
T Consensus 32 dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~--- 103 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEM--- 103 (499)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSS---
T ss_pred HcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHh---
Confidence 3334333344556665555321 112388999999999999999965322 12233443221100
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHHhCC----CcEEEEEeCCCCc------------cc----hhhhcCCCCCC--C
Q 000202 1047 QKQVLRQLSLHCKDRETDAQVAEKLWQVLNG----EKFLLLLDDVWEQ------------ID----LEAVGIPVPGS--E 1104 (1866)
Q Consensus 1047 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~----kr~LlVlDdv~~~------------~~----~~~l~~~l~~~--~ 1104 (1866)
. . ......++..++. ..+++++|++... .+ ...+...+..+ .
T Consensus 104 -----------~--~---g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~ 167 (499)
T 2dhr_A 104 -----------F--V---GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 167 (499)
T ss_dssp -----------C--T---THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS
T ss_pred -----------h--h---hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC
Confidence 0 0 0111223333332 3489999999531 01 12222222221 2
Q ss_pred CCcEEEEccCChhhhcc-----CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh
Q 000202 1105 NGSKIFMASRELDVCRN-----MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1105 ~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 1170 (1866)
.+..|+.||+..++... ...+..+.+...+.++-.+++..++......++. ....|+..+.|..
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv--~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 236 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS--TTHHHHTTSCSCC
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH--HHHHHHHhcCCCC
Confidence 34456667776655321 1335688999999988888887766432211111 1233566666654
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=93.18 E-value=0.41 Score=55.79 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=34.3
Q ss_pred hHHHHHHhhhcC------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 194 RIKEIESLLRTG------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 194 ~l~~l~~~L~~~------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
-.++|.+.|... .....+|+|+|.+|+||||++..++..+... ...+.+.
T Consensus 83 ~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv 138 (306)
T 1vma_A 83 LKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLA 138 (306)
T ss_dssp HHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred HHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEE
Confidence 345555665432 1235799999999999999999999876554 3334443
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.14 Score=61.13 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=65.9
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEE-EEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYF-ACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
.+|+|.|..|.|||||.+.+...+.....+.++ +.+..++..... . ..................+.+.|+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~-~--------~~v~q~~~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESK-K--------CLVNQREVHRDTLGFSEALRSALR 194 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS-S--------SEEEEEEBTTTBSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcc-c--------cceeeeeeccccCCHHHHHHHHhh
Confidence 489999999999999999998866544333332 222111100000 0 000000000001112257888889
Q ss_pred cCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccchh
Q 000202 289 RKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVL 331 (1866)
Q Consensus 289 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~ 331 (1866)
..+=+|++|.+.+.+.++.+.... ..|.-||+||-+...+
T Consensus 195 ~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 EDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 999999999999888777655442 2366789999877654
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.17 Score=57.76 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=62.9
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
-.+++|+|..|+|||||++.+...+...+.+.+++....-........ .+................+.+.|.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~--------~~v~q~~~gl~~~~l~~~la~aL~ 96 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK--------SIVNQREVGEDTKSFADALRAALR 96 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS--------SEEEEEEBTTTBSCHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcc--------eeeeHHHhCCCHHHHHHHHHHHHh
Confidence 458999999999999999999886654445555543211000000000 000000000000111355666677
Q ss_pred cCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccch
Q 000202 289 RKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQV 330 (1866)
Q Consensus 289 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v 330 (1866)
..+=+|++|...|.+....+.... ..|.-|++||-+...
T Consensus 97 ~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 97 EDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred hCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 777788999998776655544332 246678888877654
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=92.92 E-value=0.046 Score=64.40 Aligned_cols=29 Identities=17% Similarity=0.033 Sum_probs=24.3
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
-..++|+|.+|+|||||+..+++.+....
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 34789999999999999999998665544
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=92.90 E-value=0.71 Score=54.37 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=27.7
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
...+++|+|..|+||||+++.++...... .+.+.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~-~g~V~l~ 163 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH-GFSVVIA 163 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEEE
Confidence 46799999999999999999999865543 3344443
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.87 E-value=0.24 Score=58.89 Aligned_cols=52 Identities=19% Similarity=0.066 Sum_probs=37.1
Q ss_pred hhHHHHHHhhh-cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 193 WRIKEIESLLR-TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 193 ~~l~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
.-..+|...|. .+-..-.++.|+|.+|+||||||.+++......-..++|+.
T Consensus 44 TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 44 TGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34456666676 33334578999999999999999999986654333456764
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=92.82 E-value=0.39 Score=55.48 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=73.6
Q ss_pred EEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEE
Q 000202 1002 IGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFL 1081 (1866)
Q Consensus 1002 i~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~L 1081 (1866)
|.|+|..|+||||||+.+..... ...+.+... .+... . . ......+...+...-.....+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~------~~~~~----~----~-~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS------DFVEM----F----V-GVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH------HHHHS----T----T-THHHHHHHHHHHHHHTSCSEE
T ss_pred EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHH------HHHHH----H----h-hHHHHHHHHHHHHHHhcCCcE
Confidence 88999999999999999965322 122333211 11110 0 0 000111111222222345689
Q ss_pred EEEeCCCCc------------cch----hhhcCCCCCCCC--CcEEEEccCChhhhc-----cCCCCcEEEecCCChHHH
Q 000202 1082 LLLDDVWEQ------------IDL----EAVGIPVPGSEN--GSKIFMASRELDVCR-----NMDVNMVVKLETLSMKDA 1138 (1866)
Q Consensus 1082 lVlDdv~~~------------~~~----~~l~~~l~~~~~--gs~IivTTR~~~v~~-----~~~~~~~~~l~~L~~~~a 1138 (1866)
+|+|++... ..+ ..+...+..+.. ...++.||...++.. ....+..+.+...+.++-
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 215 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 215 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHH
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHH
Confidence 999999421 111 122222222222 234445666555422 123456888999898888
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh
Q 000202 1139 WELFCKEVGGIIQSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1139 ~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 1170 (1866)
.+++...+......++. ....++..+.|..
T Consensus 216 ~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 216 EQILRIHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp HHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HHHHHHHHccCCCCccc--CHHHHHHHcCCCC
Confidence 88887766433211111 1223666676654
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=92.65 E-value=0.052 Score=58.10 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=22.4
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+|.|.|++|+||||+|+++..+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998764
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=92.51 E-value=0.07 Score=62.66 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHh---ccCCccEEEEEcCCCchHHHHHHHHhc
Q 000202 982 YTQRNVRKIFRYV---NDVTASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 982 ~~~~~~~~i~~~l---~~~~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
|....+.++.+.+ ... ...|.|+|..|+|||++|+.+++
T Consensus 6 g~s~~~~~~~~~~~~~a~~-~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 6 GSSPAMQHLLNEIAMVAPS-DATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp CCSHHHHHHHHHHHHHCST-TSCEEEESCTTSCHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHHhCC-CCcEEEECCCCchHHHHHHHHHH
Confidence 3334444444443 222 33477999999999999999965
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=92.50 E-value=1.2 Score=54.66 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=25.5
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
..++|.++|.+|+||||+|..++......
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999877654
|
| >2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ... | Back alignment and structure |
|---|
Probab=92.47 E-value=0.23 Score=60.49 Aligned_cols=52 Identities=31% Similarity=0.494 Sum_probs=34.1
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccc-cceEEEEeeccccccccHHHHHHHHHH
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHF-EGSYFACNVRAAEETGRLDDLRKELLS 264 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ll~ 264 (1866)
..++|.|.+|+|||+|+..+++.+..+. +.++|. ..++ ......++.+++..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~-~iGE--R~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGE--RTREGNDLYHEMIE 206 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE-EESC--CHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE-ECCC--cchHHHHHHHHhhh
Confidence 4689999999999999999998764433 344443 3443 22233555555544
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.42 E-value=0.38 Score=55.35 Aligned_cols=125 Identities=15% Similarity=0.129 Sum_probs=66.9
Q ss_pred EEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHH-hCCCcE
Q 000202 1002 IGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQV-LNGEKF 1080 (1866)
Q Consensus 1002 i~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-L~~kr~ 1080 (1866)
+.++|++|+||||||+.+...... ..+.+..+.-.+. ...........+.+. -....+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999653221 2334432221110 000001111122222 234578
Q ss_pred EEEEeCCCCccc-------------hhhhcCCCCCC--CCCcEEEEccCChhhhcc-----CCCCcEEEecCCChHHHHH
Q 000202 1081 LLLLDDVWEQID-------------LEAVGIPVPGS--ENGSKIFMASRELDVCRN-----MDVNMVVKLETLSMKDAWE 1140 (1866)
Q Consensus 1081 LlVlDdv~~~~~-------------~~~l~~~l~~~--~~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~~a~~ 1140 (1866)
++++|++..... ...+...+..+ ....-++.+|...++... ...+..+.+...+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 999999974210 01111111111 123445567776665322 2346678888888888888
Q ss_pred HHHHHhc
Q 000202 1141 LFCKEVG 1147 (1866)
Q Consensus 1141 Lf~~~~~ 1147 (1866)
+|.....
T Consensus 186 il~~~~~ 192 (274)
T 2x8a_A 186 ILKTITK 192 (274)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 8876653
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=92.24 E-value=0.26 Score=55.60 Aligned_cols=90 Identities=12% Similarity=0.121 Sum_probs=51.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCccccc----ccceEEEEEecCCCCHHHHHHHHHHHhccCC---------CCccCHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKV----MFHVIIWVTVSRYWNTRKIQKQVLRQLSLHC---------KDRETDA 1065 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------~~~~~~~ 1065 (1866)
-.++.|+|.+|+|||||++.+........ .-..++|++....++...+. .+++.++... ....+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 35899999999999999999854211111 12567888877655554443 3334443221 0111222
Q ss_pred H---HHHHHHHHhC-CCcEEEEEeCCCC
Q 000202 1066 Q---VAEKLWQVLN-GEKFLLLLDDVWE 1089 (1866)
Q Consensus 1066 ~---~~~~l~~~L~-~kr~LlVlDdv~~ 1089 (1866)
+ ....+.+.+. .+.-+||+|.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2 2233444443 4667888998753
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.17 E-value=1.1 Score=54.66 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=25.4
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
...+|.++|.+|+||||++..++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999999876654
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=92.14 E-value=0.13 Score=56.51 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=22.9
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
-.|.+.|.||+||||+|..++.....+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 458899999999999999999876544
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=92.06 E-value=0.17 Score=55.32 Aligned_cols=44 Identities=30% Similarity=0.330 Sum_probs=32.1
Q ss_pred ehhhHHHHHHhhhcC-CCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 191 VEWRIKEIESLLRTG-SAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 191 r~~~l~~l~~~L~~~-~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
|+..++++.+.+... .....+|+|.|..|+||||+++.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445566665555432 23467899999999999999999988653
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=92.06 E-value=0.093 Score=63.52 Aligned_cols=48 Identities=23% Similarity=0.215 Sum_probs=35.8
Q ss_pred CceeehhhHHHHHHhhh-------------cCCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 187 DLIGVEWRIKEIESLLR-------------TGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~-------------~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.++|.+..++.+...+. ........|.++|.+|+|||++|+++++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36788888877777662 1111345689999999999999999998763
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=91.98 E-value=0.35 Score=53.51 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=23.0
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
-.+++|+|..|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45899999999999999999988654
|
| >3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
Probab=91.91 E-value=0.39 Score=49.54 Aligned_cols=89 Identities=19% Similarity=0.163 Sum_probs=64.9
Q ss_pred CccEEEcc--------------ccccccCchHHHHHHHHhhCCCceEeeC-CCC----C----CCCCchhHHHHhhhcce
Q 000202 15 MYDVFLSF--------------RGEDTRDNFTSHLYSALCQNNVETFIDN-DLK----R----GDEIPESLLGTIEASTI 71 (1866)
Q Consensus 15 ~~dvFis~--------------~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~----~----g~~~~~~~~~~i~~s~~ 71 (1866)
+=-+|++| ..+| .....-|.+.-....+-.|.|. +.. - -+.|.+.+.+.|..|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 44578888 4455 3456666666666666567775 442 2 24578889999999999
Q ss_pred EEEEeccCcccchhhHHHHHHHHHHHhhCCCEEEEEE
Q 000202 72 SIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVF 108 (1866)
Q Consensus 72 ~i~v~S~~y~~s~~c~~El~~~~~~~~~~~~~v~pvf 108 (1866)
+|+++|++...|.|-.+|+..++. +.+.+||-|.
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy 116 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIY 116 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEE
T ss_pred EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEE
Confidence 999999999999999999988872 2455666665
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=91.87 E-value=0.12 Score=57.03 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=28.2
Q ss_pred HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 196 KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 196 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
++|.+.+........+|+|.|..|.|||||++.+...+.
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 334343332223467899999999999999999988654
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=91.78 E-value=0.08 Score=56.22 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=22.1
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+|+|.|++|+||||+|+.++.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999988753
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=91.78 E-value=0.3 Score=57.56 Aligned_cols=54 Identities=19% Similarity=0.109 Sum_probs=36.3
Q ss_pred eehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 190 GVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 190 Gr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
|...-+..|..++ .+-..-.++.|.|.+|+||||||.+++.....+-..++|+.
T Consensus 50 ~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 50 GVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4444445555555 33234458999999999999999999876544334566654
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=91.70 E-value=0.27 Score=58.48 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=53.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCC-----CccCHHHHHHHHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCK-----DRETDAQVAEKLWQ 1073 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 1073 (1866)
-+++.|+|.+|+||||||.++....... =..++|++....++.. .++.++.... ...+.++....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 4689999999999999999985432211 1346788877766654 4555554321 23345555555555
Q ss_pred HhC-CCcEEEEEeCCCC
Q 000202 1074 VLN-GEKFLLLLDDVWE 1089 (1866)
Q Consensus 1074 ~L~-~kr~LlVlDdv~~ 1089 (1866)
.++ .+.-++|+|.+..
T Consensus 134 l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHTSCCSEEEEECTTT
T ss_pred HhhhcCCCeEEehHhhh
Confidence 553 4556889999864
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=91.62 E-value=0.3 Score=56.24 Aligned_cols=48 Identities=15% Similarity=0.046 Sum_probs=33.3
Q ss_pred HHHHHhhh----cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc--cceEEEE
Q 000202 196 KEIESLLR----TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF--EGSYFAC 244 (1866)
Q Consensus 196 ~~l~~~L~----~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~ 244 (1866)
.+|...|. .+-. ..++-|+|.+|+||||||.+++......+ ..++|+.
T Consensus 12 ~~LD~~LGg~~~GGl~-~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 12 PMMNIALSGEITGGMQ-SGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp HHHHHHHHSSTTCCBC-SEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHhCCCCCCCCc-CCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 44555665 3222 23689999999999999999988765543 3456665
|
| >1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B* | Back alignment and structure |
|---|
Probab=91.60 E-value=0.27 Score=60.06 Aligned_cols=52 Identities=31% Similarity=0.416 Sum_probs=34.9
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhcc-ccceEEEEeeccccccccHHHHHHHHHH
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFACNVRAAEETGRLDDLRKELLS 264 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~ll~ 264 (1866)
..++|.|.+|+|||+|+..+.+.+..+ -+.++|. .+++ ......++.+++..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~-~iGE--R~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGE--RTREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE-EESC--CSHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE-Eccc--CcHHHHHHHHhhhc
Confidence 358999999999999999999976543 3455555 4444 23333555555543
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=91.49 E-value=0.34 Score=58.02 Aligned_cols=56 Identities=21% Similarity=0.094 Sum_probs=38.4
Q ss_pred eehhhHHHHHHhhh-cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEe
Q 000202 190 GVEWRIKEIESLLR-TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACN 245 (1866)
Q Consensus 190 Gr~~~l~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 245 (1866)
+...-+..|..+|. .+-..-.++.|.|.+|+||||||.+++......-..++|+..
T Consensus 54 ~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~ 110 (366)
T 1xp8_A 54 VVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA 110 (366)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred eecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence 34444556666665 232334588999999999999999998866544345677763
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=91.47 E-value=0.51 Score=56.31 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=38.3
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCccccc----ccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKV----MFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
-.++.|+|.+|+||||||.++........ .-..++|++....++...+.+ +++.++
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 45889999999999999998854322211 124678999888777766544 344443
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=91.45 E-value=0.091 Score=57.46 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..+|+|.|++|+||||+|+.++.+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999876
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.37 E-value=0.091 Score=56.60 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.+.|.|.|++|+||||+|+.++.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999999876
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=91.35 E-value=0.36 Score=57.81 Aligned_cols=84 Identities=14% Similarity=0.172 Sum_probs=53.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCC-----CccCHHHHHHHHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCK-----DRETDAQVAEKLWQ 1073 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 1073 (1866)
.+++.|.|.+|+||||||.++....... =..++|++....++.. .++.++.+.. ...+.++....+.+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 4578899999999999998885422211 2367899988776654 2444443211 22345666666666
Q ss_pred HhCC-CcEEEEEeCCCC
Q 000202 1074 VLNG-EKFLLLLDDVWE 1089 (1866)
Q Consensus 1074 ~L~~-kr~LlVlDdv~~ 1089 (1866)
..+. .--+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 5543 446899999853
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=91.30 E-value=0.89 Score=57.84 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCchHHHHHHHHhc
Q 000202 998 TASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
...++.++|.+|+||||||+.+..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999954
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=91.28 E-value=0.32 Score=57.66 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=53.3
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCccccc---------cc-----ceEEEEEecCCCCHHHHHHHHHHHhccCC------
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKV---------MF-----HVIIWVTVSRYWNTRKIQKQVLRQLSLHC------ 1058 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------ 1058 (1866)
-+++.|+|.+|+||||||.++........ .. ..++|++....++...+.+. ++.++.+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhcC
Confidence 45899999999999999998854221111 11 46789998888777766643 44554321
Q ss_pred ---CCccCHH---HHHHHHHHHhC--CCcEEEEEeCCC
Q 000202 1059 ---KDRETDA---QVAEKLWQVLN--GEKFLLLLDDVW 1088 (1866)
Q Consensus 1059 ---~~~~~~~---~~~~~l~~~L~--~kr~LlVlDdv~ 1088 (1866)
....+.+ ++...+.+.++ .+--+||+|.+.
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0111222 23344445554 345678888874
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=91.27 E-value=0.23 Score=49.91 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=7.4
Q ss_pred cCCCCCcEEEccCCCC
Q 000202 1466 GSLECLEVLDLRGTEI 1481 (1866)
Q Consensus 1466 ~~L~~L~~L~l~~~~i 1481 (1866)
..+.+|++|+|++|.+
T Consensus 52 ~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 52 DALPALRTAHLGANPW 67 (130)
T ss_dssp GGCTTCCEEECCSSCC
T ss_pred hhccccCEEEecCCCe
Confidence 3444444445544433
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=91.24 E-value=0.25 Score=49.61 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=33.0
Q ss_pred EEEccCCcCCc--ccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEecccccC
Q 000202 1401 TLFLQRNCRLR--VIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILILRDCDF 1457 (1866)
Q Consensus 1401 ~L~L~~~~~l~--~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~ 1457 (1866)
.++.+++ .+. .+|..+ -.+|++|+|++|.|+.+|. .+..+.+|++|+|++|..
T Consensus 12 ~v~Cs~~-~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSS-CCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCC-CCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555544 444 666543 2457777777777777764 356677777777777653
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=91.17 E-value=0.18 Score=58.51 Aligned_cols=30 Identities=17% Similarity=0.177 Sum_probs=25.3
Q ss_pred CCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 206 SAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 206 ~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
.....+|+|.|..|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345779999999999999999999886554
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=91.12 E-value=0.48 Score=54.58 Aligned_cols=84 Identities=14% Similarity=0.094 Sum_probs=53.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCC-----CccCHHHH-HHHHHHH
Q 000202 1001 KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCK-----DRETDAQV-AEKLWQV 1074 (1866)
Q Consensus 1001 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~~~ 1074 (1866)
++-|+|.+|+|||||+.++.........=..++||+....++.. .+++++.+.. ...+.++. .+.+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 68899999999999998874322211112467899988877753 3666765432 12344444 3333222
Q ss_pred --h-CCCcEEEEEeCCCC
Q 000202 1075 --L-NGEKFLLLLDDVWE 1089 (1866)
Q Consensus 1075 --L-~~kr~LlVlDdv~~ 1089 (1866)
+ .++.-|||+|-|..
T Consensus 105 ~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HTCCTTCCEEEEEECSTT
T ss_pred HHhhccCceEEEEecccc
Confidence 2 45678999999865
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=91.07 E-value=0.42 Score=56.59 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=53.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccc----cceEEEEEecCCCCHHHHHHHHHHHhccCC---------CCccCHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVM----FHVIIWVTVSRYWNTRKIQKQVLRQLSLHC---------KDRETDA 1065 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------~~~~~~~ 1065 (1866)
..++.|+|.+|+||||||.++......... -..++|++....++...+.+ +++.++.+. ....+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 458999999999999999988543221111 24678999888777766554 345554321 0111222
Q ss_pred ---HHHHHHHHHhC--CCcEEEEEeCCC
Q 000202 1066 ---QVAEKLWQVLN--GEKFLLLLDDVW 1088 (1866)
Q Consensus 1066 ---~~~~~l~~~L~--~kr~LlVlDdv~ 1088 (1866)
++...+...++ .+--+||+|.+.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 23344444443 455688888874
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=90.82 E-value=0.11 Score=55.25 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=18.7
Q ss_pred EEEEEEecCCCchhHHHHHH
Q 000202 210 YKLGIWGIGGIGKTTIAGAV 229 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~ 229 (1866)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=90.81 E-value=0.79 Score=55.61 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=49.8
Q ss_pred CCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEecccccCcccCC-ccccCCCCC
Q 000202 1394 PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDCDFLFVLP-PEVGSLECL 1471 (1866)
Q Consensus 1394 ~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lP-~~i~~L~~L 1471 (1866)
..+.+|..+.+..+ +..++...|..+..|+.+.+..+ ++.++ ..+.++.+|+.+.+..+ +..++ ..+.++.+|
T Consensus 214 ~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 214 SYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTC
T ss_pred ccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceecccccccccccc
Confidence 34445555554322 34444444455555555555443 33333 33445555555555432 12222 244555666
Q ss_pred cEEEccCCCCCcCCh-hhcCCCccceecc
Q 000202 1472 EVLDLRGTEIKMLPK-EIGKLTSLRYLTV 1499 (1866)
Q Consensus 1472 ~~L~l~~~~i~~lp~-~i~~L~~L~~L~l 1499 (1866)
+.+.+.++.++.++. .+.++.+|+.+.+
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEc
Confidence 666666655655543 2555666666554
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=90.72 E-value=0.3 Score=53.42 Aligned_cols=23 Identities=30% Similarity=0.241 Sum_probs=20.5
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
+|.|.|++|+||||.|+.++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998764
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=90.71 E-value=0.12 Score=60.87 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=32.6
Q ss_pred eehhhHHHHHHhhhc--CCCCcEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 190 GVEWRIKEIESLLRT--GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 190 Gr~~~l~~l~~~L~~--~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
+.+...+.+.+.+.. .......|.|+|++|+||||+|+.++......|
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 334444444444432 123456799999999999999999998765554
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=90.59 E-value=0.63 Score=54.03 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=23.7
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
...+|+|+|.+|+||||++..++....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999998665
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* | Back alignment and structure |
|---|
Probab=90.53 E-value=0.47 Score=56.72 Aligned_cols=151 Identities=9% Similarity=-0.068 Sum_probs=89.2
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhh-ccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHH
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKIS-RHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKR 286 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~ 286 (1866)
-.++..++|..|.||++.|.++.+.+. ..|+....+. .. .......+...+- ..-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~~~~~~~l~~~~~--------------------~~p 72 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-ID---PNTDWNAIFSLCQ--------------------AMS 72 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CC---TTCCHHHHHHHHH--------------------HHH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ec---CCCCHHHHHHHhc--------------------CcC
Confidence 355789999999999999999998654 3343211111 11 1122222222211 011
Q ss_pred hhcCcEEEEEecCCC---HHHHHHHhhccCCCCCCCEEEEEccc-------cchhccC-ccceeeecCCCCHHHHHHHHH
Q 000202 287 LARKKVLIVFDDVNH---PRQIELLIGRLDRFASGSQVIITTRD-------KQVLTNC-EVDHIYQMKELVHADAHKLFT 355 (1866)
Q Consensus 287 L~~k~~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~IiiTTR~-------~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~ 355 (1866)
+-+++-++|+|+++. .+..+.+...+....+++.+|++|.. ..+.... ....+++..+++.++..+.+.
T Consensus 73 lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 345567888999864 45667777766665678888877643 1233221 234678899999998887776
Q ss_pred hhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 356 QCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
..+-... ..-..+.+..+++.++|.+.
T Consensus 153 ~~~~~~g--~~i~~~a~~~l~~~~~gdl~ 179 (343)
T 1jr3_D 153 ARAKQLN--LELDDAANQVLCYCYEGNLL 179 (343)
T ss_dssp HHHHHTT--CEECHHHHHHHHHSSTTCHH
T ss_pred HHHHHcC--CCCCHHHHHHHHHHhchHHH
Confidence 6552111 11224556777787777543
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=90.48 E-value=0.39 Score=55.84 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISY 1022 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~ 1022 (1866)
...+|+++|.+|+||||++..+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998543
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=90.40 E-value=0.2 Score=54.10 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=23.0
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
.+|.|.|++|+||||+|+.++.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999987653
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=90.39 E-value=0.31 Score=58.22 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=50.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCC-----CccCHHHHHHHHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCK-----DRETDAQVAEKLWQ 1073 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 1073 (1866)
.+++.|.|.+|+||||||.++....... =..++|++....++.. .+..++.+.. ...+.++..+.+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 4589999999999999999885432211 1357899887776643 2344443211 12234444444444
Q ss_pred Hh-CCCcEEEEEeCCC
Q 000202 1074 VL-NGEKFLLLLDDVW 1088 (1866)
Q Consensus 1074 ~L-~~kr~LlVlDdv~ 1088 (1866)
.. ..+--+||+|.+.
T Consensus 136 l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 136 LARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHTCCSEEEEECGG
T ss_pred HHhccCCCEEEEcCHH
Confidence 33 2445589999874
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=90.36 E-value=0.13 Score=54.33 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..+|+|.|+.|+||||+|+.++.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988653
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=90.34 E-value=0.93 Score=54.94 Aligned_cols=122 Identities=16% Similarity=0.158 Sum_probs=73.7
Q ss_pred ccccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcE
Q 000202 1373 EWTHAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQI 1449 (1866)
Q Consensus 1373 ~~~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~ 1449 (1866)
....++.+.+..+ +..+. .+..|..|+.+.+..+ +..++...|.++.+|+.+.+..+ +..++ ..+.++.+|+.
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 3445555555432 33222 3456777777777643 66667667777777777777543 55555 35667777777
Q ss_pred EecccccCcccCCccccCCCCCcEEEccCCCCCcCCh-hhcCCCccceecc
Q 000202 1450 LILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTV 1499 (1866)
Q Consensus 1450 L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l 1499 (1866)
+.+.++.+...-+..|.++.+|+.+.|..+ ++.++. .+.++++|+.+.+
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 777766543333456777777777777543 555543 3666666666654
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=90.29 E-value=0.14 Score=54.82 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=20.5
Q ss_pred EEEEEEecCCCchhHHHHHHHH
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFN 231 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~ 231 (1866)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=90.22 E-value=0.12 Score=55.04 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.0
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+|+|+|++|+||||+|+.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999988653
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=90.20 E-value=0.17 Score=57.13 Aligned_cols=41 Identities=17% Similarity=-0.001 Sum_probs=28.7
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 193 WRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 193 ~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..+.++.+.+.........|+|.|++|+||||+|+.+.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444444333322345689999999999999999998764
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=90.08 E-value=0.89 Score=54.15 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=33.7
Q ss_pred HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc------cccceEEEE
Q 000202 196 KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR------HFEGSYFAC 244 (1866)
Q Consensus 196 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~ 244 (1866)
..|..+|..+-..-.++.|+|.+|+||||||.+++..... .-..++|+.
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3455556533344678999999999999999999885422 123466665
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=90.04 E-value=0.18 Score=54.51 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.5
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..+|.|.|++|+||||+|+.+..+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998865
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=90.04 E-value=0.11 Score=55.58 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=23.4
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
|.|.|.|++|+|||||++++..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5689999999999999999987655444
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=90.03 E-value=0.38 Score=56.56 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=28.0
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
..++|+|+|.+|+||||++..++..+... ...+.+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEE
Confidence 46789999999999999999999876654 3344443
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=90.02 E-value=0.12 Score=55.42 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.1
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.+.|.|.|++|+||||+|+.++.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999998765
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=90.02 E-value=0.24 Score=54.10 Aligned_cols=27 Identities=26% Similarity=0.307 Sum_probs=23.9
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
...+|+|.|++|.||||||+.++....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998765
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* | Back alignment and structure |
|---|
Probab=89.99 E-value=1.8 Score=51.55 Aligned_cols=157 Identities=8% Similarity=-0.114 Sum_probs=91.8
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
-.++..++|..|.||++.++.+..... ...|+....+.+....+.+++...+. ..-+.+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~--------------------~~plf~ 75 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAIFSLCQ--------------------AMSLFA 75 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHHHHHHH--------------------HHHHCC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHHHHHhc--------------------CcCCcc
Confidence 456888999999999999988844211 12343322223333334433332211 112456
Q ss_pred CcEEEEEeCCCC---ccchhhhcCCCCCCCCCcEEEEccCC-------hhhhccC-CCCcEEEecCCChHHHHHHHHHHh
Q 000202 1078 EKFLLLLDDVWE---QIDLEAVGIPVPGSENGSKIFMASRE-------LDVCRNM-DVNMVVKLETLSMKDAWELFCKEV 1146 (1866)
Q Consensus 1078 kr~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~IivTTR~-------~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~ 1146 (1866)
.+-++|+|++.. ...++.+...+.....++.+|++|.. ..+.... ....+++..+++.++......+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 677888999854 34566665544433456777766543 2233322 223688999999999888777665
Q ss_pred cCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000202 1147 GGIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1147 ~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
...... --.+.+..+++.++|...++...
T Consensus 156 ~~~g~~-i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLNLE-LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHTTCE-ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHcCCC-CCHHHHHHHHHHhchHHHHHHHH
Confidence 322111 11345667888899988766543
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=89.95 E-value=0.37 Score=57.05 Aligned_cols=103 Identities=14% Similarity=0.028 Sum_probs=60.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcC
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARK 290 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k 290 (1866)
.++|+|..|.|||||++.+...+.. -.+.+.+....+..... .. ..+ .-- ..........+.+.|..+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~-~~-------~~i-~~~--~ggg~~~r~~la~aL~~~ 240 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKH-HK-------NYT-QLF--FGGNITSADCLKSCLRMR 240 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSS-CS-------SEE-EEE--CBTTBCHHHHHHHHTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeecccccc-ch-------hEE-EEE--eCCChhHHHHHHHHhhhC
Confidence 6999999999999999999876544 25566665433211100 00 000 000 001122235667778888
Q ss_pred cEEEEEecCCCHHHHHHHhhccCCCCCCC-EEEEEccccc
Q 000202 291 KVLIVFDDVNHPRQIELLIGRLDRFASGS-QVIITTRDKQ 329 (1866)
Q Consensus 291 ~~LlVlDdv~~~~~~~~l~~~~~~~~~gs-~IiiTTR~~~ 329 (1866)
+=+|++|.+.+.+.++.+... . .|. -+|+||....
T Consensus 241 p~ilildE~~~~e~~~~l~~~-~---~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 241 PDRIILGELRSSEAYDFYNVL-C---SGHKGTLTTLHAGS 276 (330)
T ss_dssp CSEEEECCCCSTHHHHHHHHH-H---TTCCCEEEEEECSS
T ss_pred CCEEEEcCCChHHHHHHHHHH-h---cCCCEEEEEEcccH
Confidence 889999999886655544332 2 232 3677776554
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.89 E-value=0.16 Score=63.61 Aligned_cols=45 Identities=22% Similarity=0.157 Sum_probs=37.8
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..++|.+..++.+...+..+. -|.|+|.+|+|||+||+++++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHHHh
Confidence 468999999988887776543 588999999999999999998663
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=89.86 E-value=0.45 Score=56.10 Aligned_cols=71 Identities=14% Similarity=0.061 Sum_probs=42.8
Q ss_pred ceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHH
Q 000202 188 LIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSK 265 (1866)
Q Consensus 188 ~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 265 (1866)
..|...-+..|..++. +-..-.++.|.|.+|+||||||..++.....+=..++|+. .......+...++..
T Consensus 26 ~~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lEms~~ql~~Rlls~ 96 (338)
T 4a1f_A 26 VTGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LEMSAEQLALRALSD 96 (338)
T ss_dssp CCSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SSSCHHHHHHHHHHH
T ss_pred cCcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCHHHHHHHHHHH
Confidence 3444444555555553 2223458999999999999999999986654323445543 222334555555444
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
Probab=89.78 E-value=0.15 Score=61.24 Aligned_cols=49 Identities=16% Similarity=0.117 Sum_probs=34.7
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
...+++|.+...+.+...+.... ..-|.|+|.+|+|||+||+++++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34568999886655443333211 22389999999999999999998654
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=89.78 E-value=0.18 Score=54.59 Aligned_cols=24 Identities=42% Similarity=0.319 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCchhHHHHHHHHh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
..+|+|.|++|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999875
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=89.72 E-value=0.22 Score=53.53 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=32.7
Q ss_pred ehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 191 VEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 191 r~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
...-+..+..++.. -+..+.+.|+|++|+||||+|.++++.+..
T Consensus 41 ~~~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 41 FITFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33456667777764 223456899999999999999999987643
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=89.62 E-value=0.63 Score=56.04 Aligned_cols=110 Identities=14% Similarity=0.102 Sum_probs=62.3
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEE-EeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHH
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA-CNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKR 286 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~ 286 (1866)
...+++|+|..|+|||||++.+...+.....+.+.+ ....+...... + .+................++..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~-------~--~~v~Q~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHK-------K--SIVNQREVGEDTKSFADALRAA 205 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCS-------S--SEEEEEEBTTTBSCSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccC-------c--eEEEeeecCCCHHHHHHHHHHH
Confidence 345899999999999999999998665443444433 21111000000 0 0000000000001113567777
Q ss_pred hhcCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 287 LARKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 287 L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
++..+=+|++|.+.+.+.+...+... ..|.-||.|+-...
T Consensus 206 L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 206 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred hhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 77788899999998877665544432 34666777777654
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=89.57 E-value=0.25 Score=53.12 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=23.8
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
..+|.|.|++|+||||+|+.++.....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999987654
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=89.55 E-value=0.16 Score=54.09 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.5
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.|.|.|++|+||||+|+.++.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998653
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=89.53 E-value=0.54 Score=50.97 Aligned_cols=22 Identities=27% Similarity=0.175 Sum_probs=18.7
Q ss_pred EEEEEecCCCchhHHHHHHHHh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
++.|+|.+|.|||++|......
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6789999999999999886543
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=89.52 E-value=0.22 Score=54.45 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=22.5
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..+|+|.|+.|+||||||+.++...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998765
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=89.52 E-value=0.18 Score=57.46 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=22.1
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+|.|.|++|+||||||++++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999988653
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=89.51 E-value=0.18 Score=54.08 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.7
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
-++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999988654
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=89.29 E-value=0.18 Score=55.25 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=21.7
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.|+|.|+.|+||||+|+.++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998764
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=89.27 E-value=0.11 Score=60.88 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.3
Q ss_pred EEEEEEcCCchhHHHHHHHHhcCc
Q 000202 710 RILPISGMSGTGRTVLAQRVYSNK 733 (1866)
Q Consensus 710 ~Vi~IvG~gg~Gkttla~~v~~d~ 733 (1866)
.-+-++|+.|+|||+||+.+.+..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 456699999999999999988643
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=89.23 E-value=0.27 Score=51.56 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=24.5
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
..++++|.|..|+|||||+..+...+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35689999999999999999999876554
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=89.21 E-value=0.88 Score=55.45 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=25.1
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
...+|+++|.+|+||||++..++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999999866554
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=89.20 E-value=0.18 Score=54.54 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=22.6
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+|.|.|++|+||||+|+.++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999998765
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=89.20 E-value=0.63 Score=55.46 Aligned_cols=84 Identities=15% Similarity=0.232 Sum_probs=52.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCC-----CccCHHHHHHHHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCK-----DRETDAQVAEKLWQ 1073 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 1073 (1866)
-+++.|+|.+|+||||||.++...... .=..++|++....++.. .++.++.... ...+.++....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~--~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQA--AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 468999999999999999988532221 11357888887766653 2444543211 12344555555554
Q ss_pred HhC-CCcEEEEEeCCCC
Q 000202 1074 VLN-GEKFLLLLDDVWE 1089 (1866)
Q Consensus 1074 ~L~-~kr~LlVlDdv~~ 1089 (1866)
..+ .+.-+||+|.+..
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 443 3456899999854
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.17 E-value=0.15 Score=55.78 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..+|+|.|++|+||||+|+.++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999998875
|
| >3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.16 E-value=0.078 Score=62.37 Aligned_cols=29 Identities=28% Similarity=0.142 Sum_probs=24.1
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
-+.++|+|.+|+|||+|+..+++.+....
T Consensus 175 GQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~ 203 (427)
T 3l0o_A 175 GQRGMIVAPPKAGKTTILKEIANGIAENH 203 (427)
T ss_dssp TCEEEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 34689999999999999999999765433
|
| >3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=89.11 E-value=0.29 Score=57.34 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=28.6
Q ss_pred CCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 207 AGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 207 ~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
++.++|+|.|-|||||||.|..++.-+...=..+.-++
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 36899999999999999999998886655433344443
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=89.03 E-value=0.21 Score=54.21 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..+|+|.|++|+||||+|+.++++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998765
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=89.01 E-value=0.16 Score=54.49 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=18.1
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+|.|.|++|+||||+|+.++.+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999987653
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=88.88 E-value=1.5 Score=49.91 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=21.3
Q ss_pred EEEEEEecCCCchhHHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.+++|.|..|.|||||.+.++-..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999998654
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=88.76 E-value=0.29 Score=52.79 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=20.2
Q ss_pred EEEEEEecCCCchhHHHHHHHH
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFN 231 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~ 231 (1866)
.+++|.|+.|.|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999976
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=88.67 E-value=0.26 Score=52.36 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..+|+|.|+.|+||||+|+.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.61 E-value=1.1 Score=50.28 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.3
Q ss_pred EEEEEEecCCCchhHHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.+++|+|..|.|||||++.++.-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998743
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=88.59 E-value=0.18 Score=53.56 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=21.2
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
+|+|.|++|+||||+|+.+..+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998865
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=88.57 E-value=0.22 Score=53.50 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCchhHHHHHHHHh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
...|+|+|++|+||||+|+.++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999886
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=88.54 E-value=0.25 Score=54.04 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
...+|+|.|++|+||||+|+.++++.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998764
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=88.54 E-value=0.21 Score=53.61 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=21.1
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
+|+|.|++|+||||+|+.++.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998865
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=88.53 E-value=0.35 Score=52.74 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhcc---CCccEEEEEcCCCchHHHHHHHHhc
Q 000202 984 QRNVRKIFRYVND---VTASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 984 ~~~~~~i~~~l~~---~~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
++.++++.+.+.. ....+|+|.|..|+||||+++.+..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455556655532 3456899999999999999999843
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.53 E-value=0.22 Score=54.12 Aligned_cols=25 Identities=28% Similarity=0.205 Sum_probs=22.4
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+|+|.|++|+||||+|+.++.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988653
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.49 E-value=0.24 Score=53.27 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.7
Q ss_pred EEEEEEecCCCchhHHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..|+|.|++|+||||+|+.++++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=88.43 E-value=0.21 Score=53.02 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=18.6
Q ss_pred cEEEEEcCCCchHHHHHHHH
Q 000202 1000 SKIGVYGVGGIGKTAALKAL 1019 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v 1019 (1866)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999998
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=88.42 E-value=0.24 Score=53.71 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.7
Q ss_pred EEEEEEecCCCchhHHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.+|+|.|++|+||||+|+.++.+.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998764
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=88.35 E-value=0.24 Score=52.26 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=21.4
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.|+|.|++|+||||+|+.+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988653
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=88.29 E-value=0.27 Score=53.66 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
...+|+|.|+.|+||||+|+.++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4678999999999999999999875
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=88.29 E-value=0.36 Score=53.10 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=23.6
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
.+|+|.|++|+||||+|+.++.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 579999999999999999999876543
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=88.25 E-value=0.62 Score=56.94 Aligned_cols=89 Identities=17% Similarity=0.281 Sum_probs=48.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCC-CHHHHHHHHHHHhc--------cCCCCccCHHH----
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYW-NTRKIQKQVLRQLS--------LHCKDRETDAQ---- 1066 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~--------~~~~~~~~~~~---- 1066 (1866)
..++|+|..|+|||||+..+........ -+.++++.+.+.. ...++.+++...=. ....+......
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 3689999999999999998854322221 2345566665543 34455554433200 00111111111
Q ss_pred HHHHHHHHh---CCCcEEEEEeCCCC
Q 000202 1067 VAEKLWQVL---NGEKFLLLLDDVWE 1089 (1866)
Q Consensus 1067 ~~~~l~~~L---~~kr~LlVlDdv~~ 1089 (1866)
..-.+.+++ +++++||++||+..
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 011223332 68999999999954
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=88.17 E-value=0.25 Score=56.14 Aligned_cols=27 Identities=15% Similarity=0.381 Sum_probs=23.7
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
...+|+|.|++|+||||+|+.+.....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999999988654
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=88.16 E-value=0.24 Score=54.53 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=23.5
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
..+|+|+|+.|+|||||++.+......
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 458999999999999999999986643
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=88.08 E-value=0.35 Score=53.29 Aligned_cols=28 Identities=14% Similarity=0.168 Sum_probs=24.2
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
..+|+|.|+.|+||||+|+.++.++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3579999999999999999999876543
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=88.07 E-value=0.72 Score=50.10 Aligned_cols=110 Identities=13% Similarity=0.013 Sum_probs=55.1
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
-.+..++|..|.||||.|...+++...+-..++.+.-... ... -...+.+.+............ ..+.+...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~R~----ge~~i~s~~g~~~~a~~~~~~--~~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--NRY----SEEDVVSHNGLKVKAVPVSAS--KDIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------------CCEEECSSG--GGGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--Ccc----hHHHHHhhcCCeeEEeecCCH--HHHHHHHh
Confidence 4688999999999999999999876655444444431111 100 011222322211110011111 11222223
Q ss_pred cCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 289 RKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 289 ~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
++--+|++|.+. +.++++.+....+ .|-.||+|.++-+
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQD 139 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecccc
Confidence 333499999985 3456644433211 3779999999664
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=88.06 E-value=0.28 Score=53.80 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
...+|+|.|.+|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999988753
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=88.02 E-value=0.59 Score=56.04 Aligned_cols=42 Identities=24% Similarity=0.329 Sum_probs=30.5
Q ss_pred HHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 195 IKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 195 l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
..++...+........+|+|+|.+|+|||||+.+++......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 334444444334467899999999999999999998765443
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=87.98 E-value=0.24 Score=54.94 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
...|.|.|++|+||||+|+.++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999998865
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=87.88 E-value=0.28 Score=52.99 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=22.4
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..+|+|.|++|+||||+|+.++.+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=87.78 E-value=0.26 Score=53.94 Aligned_cols=21 Identities=33% Similarity=0.503 Sum_probs=19.9
Q ss_pred EEEEEecCCCchhHHHHHHHH
Q 000202 211 KLGIWGIGGIGKTTIAGAVFN 231 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~ 231 (1866)
+|+|.|+.|+||||+|+.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=87.76 E-value=0.2 Score=54.84 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.8
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.++|+|.|++|+|||||++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45799999999999999999988653
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=87.68 E-value=0.27 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..+|+|.|++|+||||+|+.++.+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4479999999999999999998865
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=87.64 E-value=1.1 Score=54.18 Aligned_cols=57 Identities=11% Similarity=0.148 Sum_probs=36.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccc----cccceEEEEEecCCCCHHHHHHHHHHHhcc
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVK----VMFHVIIWVTVSRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 1056 (1866)
-.++.|+|..|+|||||+..++-..... ..-..++|++....++...+. .+++.++.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl 238 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGL 238 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCC
Confidence 3589999999999999999763211111 123467888877666655443 35555543
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=87.59 E-value=0.26 Score=52.17 Aligned_cols=21 Identities=19% Similarity=0.006 Sum_probs=19.1
Q ss_pred cEEEEEcCCCchHHHHHHHHh
Q 000202 1000 SKIGVYGVGGIGKTAALKALI 1020 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~ 1020 (1866)
.+|.|.|+.|+||||+|+.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999984
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=87.53 E-value=0.27 Score=53.08 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
...+|+|.|+.|+||||+|+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999875
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=87.32 E-value=0.43 Score=52.41 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=26.5
Q ss_pred HHHHHHHHhcc--CCccEEEEEcCCCchHHHHHHHHhc
Q 000202 986 NVRKIFRYVND--VTASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 986 ~~~~i~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
-+++|.+.+.. ....+|+|+|..|.|||||++.+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455555532 3456899999999999999999854
|
| >3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D* | Back alignment and structure |
|---|
Probab=87.31 E-value=0.64 Score=56.25 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=21.6
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhc
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
.++|.|..|+|||+|+.++++....
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh
Confidence 4789999999999999999986544
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=87.26 E-value=0.46 Score=55.08 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
...+|.|.|++|+||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998764
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=87.19 E-value=0.34 Score=54.69 Aligned_cols=36 Identities=17% Similarity=0.069 Sum_probs=27.5
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
-.++.|.|.+|+||||||.+++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 458999999999999999998876544334556654
|
| >2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A* | Back alignment and structure |
|---|
Probab=87.17 E-value=0.62 Score=56.77 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.4
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..++|.|-+|+|||+|+..+++...
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~ 177 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQAS 177 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999998654
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=87.17 E-value=0.99 Score=55.34 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCc
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYP 1023 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 1023 (1866)
..++|.++|.+|+||||++..+....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999986433
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=87.17 E-value=0.42 Score=58.33 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=34.8
Q ss_pred CceeehhhHHHHHHhhhc------------CCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 187 DLIGVEWRIKEIESLLRT------------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~------------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
..+|.+...+.+...+.. .....+-|.++|++|+||||+|++++......
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 567777766666554421 01123458899999999999999999876443
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=87.15 E-value=1 Score=57.58 Aligned_cols=27 Identities=26% Similarity=0.175 Sum_probs=23.1
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
+++.|.|.+|+||||++..+.......
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 578999999999999999998865543
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=87.14 E-value=0.29 Score=54.59 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.6
Q ss_pred EEEEEEecCCCchhHHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.+|+|+|..|+||||+|+.++...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=87.13 E-value=0.28 Score=52.26 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhc
Q 000202 1000 SKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999943
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=87.10 E-value=0.29 Score=52.84 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=23.3
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356899999999999999999987654
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=87.09 E-value=0.3 Score=53.75 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=23.7
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
..+|+|.|+.|+||||+|+.+..+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999987654
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=87.09 E-value=0.3 Score=52.86 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.8
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
+|+|.|+.|+||||+|+.+.++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=86.97 E-value=0.32 Score=55.62 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.8
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..+|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999998653
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=86.96 E-value=1.1 Score=53.25 Aligned_cols=87 Identities=15% Similarity=0.252 Sum_probs=0.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCccccccc----ceEEEEEecCCCCHHHHHHHHHHHh------------ccCCCCccC
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMF----HVIIWVTVSRYWNTRKIQKQVLRQL------------SLHCKDRET 1063 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i~~~l------------~~~~~~~~~ 1063 (1866)
+++.|+|..|+|||||+..+.......... ..++|++....+....+.. +++.. .........
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~-i~q~~~~~~~~v~~ni~~~~~~~~~~ 210 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIRE-IAQNRGLDPDEVLKHIYVARAFNSNH 210 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHH-HHHTTTCCHHHHGGGEEEEECCSHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHH-HHHHcCCCHHHHhhCEEEEecCChHH
Q ss_pred HHHHHHHHHHHhC------CCcEEEEEeCC
Q 000202 1064 DAQVAEKLWQVLN------GEKFLLLLDDV 1087 (1866)
Q Consensus 1064 ~~~~~~~l~~~L~------~kr~LlVlDdv 1087 (1866)
..+....+...+. .+.-+||+|.+
T Consensus 211 ~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ 240 (349)
T 1pzn_A 211 QMLLVQQAEDKIKELLNTDRPVKLLIVDSL 240 (349)
T ss_dssp HHHHHHHHHHHHHHSSSSSSCEEEEEEETS
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEeCc
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=86.90 E-value=2.1 Score=54.18 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=27.9
Q ss_pred HHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 197 EIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 197 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
.+...|..+-..-.+++|.|.+|+|||||++.++.....
T Consensus 269 ~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 269 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 344455432223458999999999999999999985544
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=86.90 E-value=0.3 Score=57.59 Aligned_cols=91 Identities=12% Similarity=0.104 Sum_probs=46.8
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccc-cccceEEEEEecCC-CCHHHHHHHHHHHhccCCCCccCHHH-----HHHH
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVK-VMFHVIIWVTVSRY-WNTRKIQKQVLRQLSLHCKDRETDAQ-----VAEK 1070 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~-----~~~~ 1070 (1866)
.-..++|+|..|+|||||++.+.+.-..+ ..+.+ +++-+.+. ..+.++.+.+-..+-....+...... ..-.
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt 251 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIE 251 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34579999999999999999885432111 23333 34666543 23333333320000001111111111 1111
Q ss_pred HHHHh--CCCcEEEEEeCCCC
Q 000202 1071 LWQVL--NGEKFLLLLDDVWE 1089 (1866)
Q Consensus 1071 l~~~L--~~kr~LlVlDdv~~ 1089 (1866)
+.+++ +++.+||++||+..
T Consensus 252 ~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 252 KAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp HHHHHHHTSCEEEEEEECHHH
T ss_pred HHHHHHhcCCCEEEEEeCchH
Confidence 22233 68999999999864
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=86.88 E-value=0.36 Score=53.09 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=24.0
Q ss_pred CCcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 207 AGVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 207 ~~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
...++|.|.|++|+||||.|+.++.++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998764
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=86.84 E-value=0.85 Score=50.81 Aligned_cols=46 Identities=26% Similarity=0.187 Sum_probs=29.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHH
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQ 1049 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 1049 (1866)
.+++|+|.+|+|||||++.+....... =..++|+.... ....+...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHH
Confidence 579999999999999999985322211 12455665433 34444433
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=86.83 E-value=0.3 Score=53.55 Aligned_cols=22 Identities=45% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEEEecCCCchhHHHHHHHH
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFN 231 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~ 231 (1866)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=86.82 E-value=0.42 Score=55.90 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=32.6
Q ss_pred ceeehhhHHHHHHhhhcC--CCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 188 LIGVEWRIKEIESLLRTG--SAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 188 ~vGr~~~l~~l~~~L~~~--~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
++|-...+..+...+... .....+|||.|..|+||||||+.+.....
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344445555554444322 34567999999999999999999887554
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=86.81 E-value=0.32 Score=52.46 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISY 1022 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~ 1022 (1866)
..+|+|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 357999999999999999999653
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=86.75 E-value=1.6 Score=53.21 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=27.7
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
...+|+|+|.+|+||||++..++..+... ...+.+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vllv 132 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLV 132 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEe
Confidence 35789999999999999999999876654 3334443
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=86.69 E-value=0.44 Score=51.32 Aligned_cols=110 Identities=15% Similarity=0.066 Sum_probs=55.7
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
-++..++|..|.||||.+...+++...+-..+..+.-... .. .-...+.+.+............ ..+.+.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d--~r----~~~~~i~s~~g~~~~a~~~~~~--~~i~~~~~ 79 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEID--NR----YSKEDVVSHMGEKEQAVAIKNS--REILKYFE 79 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------------CEEECTTSCEEECEEESSS--THHHHHCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--cc----chHHHHHhhcCCceeeEeeCCH--HHHHHHHh
Confidence 4688999999999999999999876543333333321100 00 0000111111100000001111 22333344
Q ss_pred cCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 289 RKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 289 ~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
++-=+|++|.+. +.++++.+....+ .|..||+|.++.+
T Consensus 80 ~~~dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 80 EDTEVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLDMD 119 (191)
T ss_dssp TTCSEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEecccc
Confidence 333489999875 3455555544222 2779999998653
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=86.67 E-value=1.3 Score=52.01 Aligned_cols=51 Identities=12% Similarity=0.036 Sum_probs=35.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 1053 (1866)
-.++.|.|.+|+||||||.++.......+ ..++|++.. .+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 35789999999999999999853322222 567777765 4566666666554
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=86.65 E-value=0.55 Score=52.32 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=26.7
Q ss_pred HHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 197 EIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 197 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.+...|..+-..-.+++|+|.+|+|||||++.++...
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444443222334689999999999999999998743
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=86.60 E-value=0.33 Score=52.94 Aligned_cols=23 Identities=35% Similarity=0.312 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCchHHHHHHHHhc
Q 000202 999 ASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
..+|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999943
|
| >3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D* | Back alignment and structure |
|---|
Probab=86.55 E-value=0.66 Score=56.15 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=20.9
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.++|.|.+|+|||+|+..+++...
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCB
T ss_pred EEEEecCCCCCchHHHHHHHHHHH
Confidence 578999999999999999988644
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=86.53 E-value=0.79 Score=56.57 Aligned_cols=53 Identities=19% Similarity=0.111 Sum_probs=34.9
Q ss_pred eehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEE
Q 000202 190 GVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 243 (1866)
Q Consensus 190 Gr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (1866)
|...-+..|..++. +-..-.++.|.|.+|+||||+|.+++.....+=..++|+
T Consensus 179 gi~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 179 GVPSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp SBCCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CcCCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 33444445555552 323345899999999999999999998765542334554
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=86.52 E-value=0.37 Score=62.40 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=41.1
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
.....++|.+..++.+...+..+ ..+.|+|.+|+||||||+.++......
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred cccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 34467899999998888888754 378999999999999999999866544
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=86.45 E-value=0.34 Score=54.04 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.1
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
...|+|.|++|+||||+|+.++.+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998764
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=86.44 E-value=0.38 Score=52.90 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
...+|+|.|..|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988654
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=86.43 E-value=0.76 Score=54.80 Aligned_cols=56 Identities=20% Similarity=0.125 Sum_probs=38.3
Q ss_pred eehhhHHHHHHhhh-cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEe
Q 000202 190 GVEWRIKEIESLLR-TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACN 245 (1866)
Q Consensus 190 Gr~~~l~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 245 (1866)
+...-+..|..+|. .+-..-+++.|.|.+|+||||||.+++......-..++|+..
T Consensus 43 ~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 43 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 33444455666665 332345689999999999999999999866544345677763
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=86.37 E-value=0.32 Score=54.06 Aligned_cols=26 Identities=27% Similarity=0.183 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
...|.|.|++|+||||+|+.++.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999988653
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=86.37 E-value=1.5 Score=54.38 Aligned_cols=71 Identities=17% Similarity=0.051 Sum_probs=42.8
Q ss_pred eeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc-cceEEEEeeccccccccHHHHHHHHHHHH
Q 000202 189 IGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF-EGSYFACNVRAAEETGRLDDLRKELLSKL 266 (1866)
Q Consensus 189 vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 266 (1866)
.|...-+..|..++ .+-..-.++.|.|.+|+||||+|..++....... ..++|+.. ......+...++...
T Consensus 181 ~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl------E~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 181 AGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL------EMPAAQLTLRMMCSE 252 (444)
T ss_dssp --CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES------SSCHHHHHHHHHHHH
T ss_pred CcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC------CCCHHHHHHHHHHHH
Confidence 34444455565555 3333445899999999999999999998665432 34556542 223345555555443
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=86.36 E-value=0.28 Score=51.95 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.1
Q ss_pred cEEEEEEecCCCchhHHHHHHH
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVF 230 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~ 230 (1866)
-.+++|+|..|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3589999999999999999643
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=86.35 E-value=0.28 Score=55.34 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.2
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..|+|+|+.|+||||+++.++....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3699999999999999999998653
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=86.35 E-value=0.48 Score=53.32 Aligned_cols=49 Identities=20% Similarity=0.161 Sum_probs=32.4
Q ss_pred HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc------cccceEEEE
Q 000202 196 KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR------HFEGSYFAC 244 (1866)
Q Consensus 196 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~ 244 (1866)
..|..+|..+-..-.+++|+|.+|+||||||..++..... .-..++|+.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 3445555432223458999999999999999999885322 124566665
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=86.34 E-value=0.77 Score=53.30 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.4
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
..+|+++|.+|+||||++..++......
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5789999999999999999999866544
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=86.26 E-value=0.33 Score=53.12 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.9
Q ss_pred EEEEEEecCCCchhHHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.+|+|.|+.|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 489999999999999999998865
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=86.21 E-value=0.3 Score=52.34 Aligned_cols=114 Identities=15% Similarity=0.062 Sum_probs=54.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC---CCHHHHHHHHHHHhc-----cCCC-CccC-------
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY---WNTRKIQKQVLRQLS-----LHCK-DRET------- 1063 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~~~l~-----~~~~-~~~~------- 1063 (1866)
..|-|++-.|.||||+|-.+. .+.-++=-.+.++.+.+. .....+++.+. +. .... ...+
T Consensus 29 g~i~v~tG~GkGKTTaA~Gla--lRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTA--ARAVGHGKNVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHH--HHHHHTTCCEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGGHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH--HHHHHCCCeEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCCcHHHHHH
Confidence 345666667799999998773 222222122334433322 22233333321 10 0000 1111
Q ss_pred HHHHHHHHHHHhCCCc-EEEEEeCCCC-----ccchhhhcCCCCCCCCCcEEEEccCChh
Q 000202 1064 DAQVAEKLWQVLNGEK-FLLLLDDVWE-----QIDLEAVGIPVPGSENGSKIFMASRELD 1117 (1866)
Q Consensus 1064 ~~~~~~~l~~~L~~kr-~LlVlDdv~~-----~~~~~~l~~~l~~~~~gs~IivTTR~~~ 1117 (1866)
.......+++.+...+ =|||||++-. ....+.+...+.......-||+|+|...
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 1223344555565444 5999999843 1222233222223334568999999853
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=86.18 E-value=0.34 Score=52.98 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.6
Q ss_pred EEEEEEecCCCchhHHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.+++|.|..|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 489999999999999999998754
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=86.11 E-value=2.1 Score=53.25 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.3
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
.+.|.|.+|+||||++.++...+....
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 789999999999999999998665443
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=86.09 E-value=0.41 Score=51.03 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.8
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..+|+|.|+.|+||||+++.+.....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999999988653
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=86.03 E-value=0.36 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.|+|.|++|+||||+|+.++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=86.02 E-value=0.35 Score=51.72 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhc
Q 000202 1000 SKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.+++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999854
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=85.94 E-value=0.28 Score=54.12 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.2
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhc
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
+|+|.|..|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999886643
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=85.85 E-value=0.37 Score=54.56 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.4
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..+|+|.|+.|+|||||++.++++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999754
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=85.78 E-value=0.52 Score=56.17 Aligned_cols=53 Identities=19% Similarity=0.070 Sum_probs=36.5
Q ss_pred hhHHHHHHhhh-cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEe
Q 000202 193 WRIKEIESLLR-TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACN 245 (1866)
Q Consensus 193 ~~l~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 245 (1866)
.-+..|...|. .+-..-+++.|+|.+|+||||||.+++......=..++|+..
T Consensus 44 TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 44 TGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 33445556665 332345689999999999999999999765544345667653
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=85.76 E-value=1.8 Score=50.11 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=27.5
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
...+++|+|.+|+||||++..++...... ...+.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEe
Confidence 35689999999999999999999866543 3344443
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=85.69 E-value=0.31 Score=51.58 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=19.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhc
Q 000202 1000 SKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999943
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=85.68 E-value=0.58 Score=53.14 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
...+|.|.|++|+||||+|+.+..+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356899999999999999999988653
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=85.61 E-value=0.38 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.4
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.|+|.|++|+||||+|+.++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=85.60 E-value=0.79 Score=54.52 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=27.9
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
...+++|+|..|+||||+++.++..+... .+.+.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~ 191 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 191 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEe
Confidence 35689999999999999999999866543 3445544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1866 | ||||
| d2a5yb3 | 277 | c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor | 5e-37 | |
| d2a5yb3 | 277 | c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor | 1e-27 | |
| d2a5yb3 | 277 | c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor | 1e-08 | |
| d1fyva_ | 161 | c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H | 2e-16 | |
| d1fyxa_ | 149 | c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H | 4e-14 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 8e-10 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-08 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.001 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-06 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 6e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 4e-04 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 9e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.001 |
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Score = 139 bits (351), Expect = 5e-37
Identities = 42/253 (16%), Positives = 82/253 (32%), Gaps = 20/253 (7%)
Query: 198 IESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNK----ISRHFEGSYFACNVRAAEETG 253
I+ L + L + G G GK+ IA +K I +++ +
Sbjct: 33 IKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAPKS 91
Query: 254 RLDDLRKELLSKLLNDRNVKNFQNI-------SVNFQSKRLARKKVLIVFDDVNHPRQIE 306
D LL D + + + R L VFDDV I
Sbjct: 92 TFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIR 151
Query: 307 LLIGRLDRFASGSQVIITTRDKQVLTNCEVD-HIYQMKELVHADAHKLFTQCAFRGDHLD 365
+ ++TTRD ++ ++ L + + +
Sbjct: 152 WA------QELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMP-MPVG 204
Query: 366 AGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIVPHMEIQEVLKISYD 425
++ +K ++ + G P L + ++ E+ KLE + ++ + SY
Sbjct: 205 EKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYK 264
Query: 426 SLDDSQKRMHDLL 438
SL + +R ++L
Sbjct: 265 SLAMALQRCVEVL 277
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Score = 112 bits (281), Expect = 1e-27
Identities = 28/257 (10%), Positives = 84/257 (32%), Gaps = 27/257 (10%)
Query: 987 VRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPE--VKVMFHVIIWVTVSRYWNTR 1044
V K + D+ + + ++G G GK+ +S + + + + I+W+ S
Sbjct: 32 VIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKS 91
Query: 1045 KIQKQVLRQLSLHCKDR----------ETDAQVAEKLWQVLNGEKFLLLLDDVWEQIDLE 1094
L L +D + +++ L + DDV ++ +
Sbjct: 92 TFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIR 151
Query: 1095 AVGIPVPGSENGSKIFMASRELDVCRNMDVNM-VVKLETLSMKDAWELFCKEVGGIIQSP 1153
E + + +R++++ +++ +L + + ++ +
Sbjct: 152 ------WAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGE 205
Query: 1154 DIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHASRKFSLPITIEECCTEDLIEL 1213
++ G P ++ K+ + + + ++ S + + +
Sbjct: 206 KEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGL-------VGVECI 258
Query: 1214 LKFSFDQLKDHDVKSCF 1230
+S+ L ++ C
Sbjct: 259 TPYSYKSL-AMALQRCV 274
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Score = 55.6 bits (133), Expect = 1e-08
Identities = 22/141 (15%), Positives = 39/141 (27%), Gaps = 31/141 (21%)
Query: 709 VRILPISGMSGTGRTVLAQRVYSN--KKVKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSE 766
L + G +G+G++V+A + S + + ++ W S ST +
Sbjct: 44 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLML 103
Query: 767 IRRAENMADLSE--------------------RLLVVLDDVCDIDDEELHNFRLLISNMR 806
+ + S L V DDV +
Sbjct: 104 KSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQEL------- 156
Query: 807 DSGSCFLVTTHSHRVATMMSS 827
LVTT ++ S
Sbjct: 157 --RLRCLVTTRDVEISNAASQ 175
|
| >d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Toll/Interleukin receptor TIR domain family: Toll/Interleukin receptor TIR domain domain: Toll-like receptor 1, TLR1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.3 bits (187), Expect = 2e-16
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 3/111 (2%)
Query: 11 NDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFI-DNDLKRGDEIPESLLGTIEAS 69
+ F+S+ G D+ + L L + ++ + + + G I E+++ IE S
Sbjct: 8 QRNLQFHAFISYSGHDSF-WVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKS 66
Query: 70 TISIIIFSEKYASSKWCLDELLKILECKRNYGQIV-IPVFYRVDPSHVRKQ 119
SI + S + S+WC EL + G I + P +
Sbjct: 67 YKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPS 117
|
| >d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Toll/Interleukin receptor TIR domain family: Toll/Interleukin receptor TIR domain domain: Toll-like receptor 2, TLR2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.4 bits (169), Expect = 4e-14
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 5/110 (4%)
Query: 14 KMYDVFLSFRGEDT---RDNFTSHLYSALCQNNVETFIDNDLKRGDEIPESLLGTIEAST 70
YD F+S+ D + L + + D G I ++++ +IE S
Sbjct: 4 ICYDAFVSYSERDAYWVENLMVQELENFNPPFKL-CLHKRDFIHGKWIIDNIIDSIEKSH 62
Query: 71 ISIIIFSEKYASSKWCLDEL-LKILECKRNYGQIVIPVFYRVDPSHVRKQ 119
++ + SE + S+WC EL I + Q
Sbjct: 63 KTVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQ 112
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 60.4 bits (145), Expect = 8e-10
Identities = 25/152 (16%), Positives = 45/152 (29%), Gaps = 23/152 (15%)
Query: 1365 LTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTS- 1423
L + + T+ + +N + L L L L N + P + +T+
Sbjct: 231 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 290
Query: 1424 ------------------LKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEV 1465
L L L I + + +L LQ L + +
Sbjct: 291 ELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANN--KVSDVSSL 347
Query: 1466 GSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL 1497
+L + L +I L + LT + L
Sbjct: 348 ANLTNINWLSAGHNQISDLT-PLANLTRITQL 378
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 56.9 bits (136), Expect = 1e-08
Identities = 31/166 (18%), Positives = 57/166 (34%), Gaps = 27/166 (16%)
Query: 1355 YQFLLGARAGLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIP 1414
+ L+ +++ T+ + N L+ + S NL L L N + P
Sbjct: 199 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 258
Query: 1415 PSFFELMTSLKVLNLSKTRIKSLPE---------------------TLVNLKCLQILILR 1453
+T L L L +I ++ + NLK L L L
Sbjct: 259 ---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 315
Query: 1454 DCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTV 1499
+ + P V SL L+ L ++ + + LT++ +L+
Sbjct: 316 FNNISDISP--VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSA 358
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 48.8 bits (115), Expect = 4e-06
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 1374 WTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTR 1433
+ + N++ + S L LF N +V S +T++ L+ +
Sbjct: 306 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFANN---KVSDVSSLANLTNINWLSAGHNQ 362
Query: 1434 IKSLPETLVNLKCLQILILRD 1454
I L L NL + L L D
Sbjct: 363 ISDLTP-LANLTRITQLGLND 382
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 52.9 bits (125), Expect = 2e-07
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 1405 QRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPE 1464
S +L SL+ LN+S ++ LP L+ L + L +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIA----SFNHLAEVPEL 322
Query: 1465 VGSLECLEVLDLRGTEIKMLPKEIGKLTSLR 1495
+ L+ L + ++ P + LR
Sbjct: 323 PQN---LKQLHVEYNPLREFPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 49.1 bits (115), Expect = 3e-06
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 1374 WTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTR 1433
+ + +N L LP P L L N L +P EL +LK L++
Sbjct: 283 PPSLEELNVSNNKLIELP--ALPPRLERLIASFN-HLAEVP----ELPQNLKQLHVEYNP 335
Query: 1434 IKSLPETLVNLKCLQI 1449
++ P+ +++ L++
Sbjct: 336 LREFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 40.6 bits (93), Expect = 0.001
Identities = 20/93 (21%), Positives = 28/93 (30%), Gaps = 7/93 (7%)
Query: 1372 EEWTHAKMIFFMDNDLQTLPGRPSC--PNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNL 1429
EW + + C L L N L +P EL L+ L
Sbjct: 11 SEWERNAPPGNGEQREMAVSRLRDCLDRQAHELEL-NNLGLSSLP----ELPPHLESLVA 65
Query: 1430 SKTRIKSLPETLVNLKCLQILILRDCDFLFVLP 1462
S + LPE +LK L + + P
Sbjct: 66 SCNSLTELPELPQSLKSLLVDNNNLKALSDLPP 98
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.7 bits (117), Expect = 2e-06
Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 14/170 (8%)
Query: 1362 RAGLTEPPSEEEWTHAKMIFFMDNDLQTLPGR--PSCPNLLTLFLQRNCRLRVIPPSFFE 1419
GL + P + ++ +N + + + NL TL L N ++ I P F
Sbjct: 19 DLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFA 76
Query: 1420 LMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGT 1479
+ L+ L LSK ++K LPE + LQ L + + + V L + V++L
Sbjct: 77 PLVKLERLYLSKNQLKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 134
Query: 1480 EIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQAL 1529
+K E G ++ L+ + I + L L
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNITT--------IPQGLPPSLTEL 176
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.9 bits (97), Expect = 5e-04
Identities = 20/164 (12%), Positives = 47/164 (28%), Gaps = 11/164 (6%)
Query: 1374 WTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTR 1433
++ G L+ + + IP SL L+L +
Sbjct: 126 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNK 182
Query: 1434 IKS-LPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLT 1492
I +L L L L L V + + L L L ++ +P +
Sbjct: 183 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK 242
Query: 1493 SLRYLTVFFFGSMYKSEYIKLPPDLISS-DILSRLQALETLSID 1535
++ + ++ + + + ++ + +S+
Sbjct: 243 YIQVV------YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 280
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.1 bits (106), Expect = 6e-06
Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 2/117 (1%)
Query: 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL 1437
+++ DL L + L L N RLR +PP+ L L+VL S ++++
Sbjct: 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHN-RLRALPPALAALR-CLEVLQASDNALENV 58
Query: 1438 PETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSL 1494
+ ++L+ + + S L +L+L+G + +L +
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 1e-04
Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 6/101 (5%)
Query: 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTS 1423
L ++ + PG + L N L +P + +
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173
Query: 1424 LKVLNLSKTRIKSLPETLVNLKCLQILILR------DCDFL 1458
L L L + + ++P+ L L +C+ L
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEIL 214
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.8 bits (96), Expect = 4e-04
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 1374 WTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTR 1433
+ + + + + L L L N L +P F + +L++S+TR
Sbjct: 153 FESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 212
Query: 1434 IKSLP-ETLVNLKCLQILILRDCDFLFVLPP 1463
I SLP L NLK L+ L LP
Sbjct: 213 IHSLPSYGLENLKKLRAR---STYNLKKLPT 240
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 41.3 bits (95), Expect = 9e-04
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 3/92 (3%)
Query: 1374 WTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTR 1433
K+ ++ L NL L L+ N +P +L L LN+S
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL-KFLHSLNVSFNN 279
Query: 1434 IKSLPETLVNLKCLQILILRDCDFL--FVLPP 1463
+ NL+ + + L LP
Sbjct: 280 LCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA 311
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 40.4 bits (93), Expect = 0.001
Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 1374 WTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTR 1433
+ N + + + LT + ++ I P + +L ++L +
Sbjct: 149 GLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ 206
Query: 1434 IKSLPETLVNLKCLQILILRD 1454
I + L N L I+ L +
Sbjct: 207 ISDVSP-LANTSNLFIVTLTN 226
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1866 | |||
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 100.0 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 100.0 | |
| d1fyva_ | 161 | Toll-like receptor 1, TLR1 {Human (Homo sapiens) [ | 99.62 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.61 | |
| d1fyxa_ | 149 | Toll-like receptor 2, TLR2 {Human (Homo sapiens) [ | 99.55 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.54 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.51 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.38 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.37 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.34 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.33 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.33 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.29 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.29 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.26 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.23 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.15 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.14 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.13 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.1 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.09 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.08 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.07 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.04 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.01 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.01 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.0 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 98.98 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 98.97 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.89 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 98.85 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.83 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.77 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.66 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.6 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.55 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 98.4 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.39 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 98.34 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.28 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 98.28 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 98.26 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 98.26 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 98.23 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.23 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 98.19 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 98.17 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 98.14 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 98.08 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 98.06 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 97.85 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 97.82 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 97.78 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 97.78 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 97.73 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 97.72 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 97.69 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.64 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 97.62 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 97.62 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 97.59 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 97.58 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 97.56 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 97.5 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 97.49 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 97.48 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 97.48 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 97.45 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 97.35 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.34 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.34 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 97.31 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 97.19 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 96.99 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.91 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 96.9 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 96.83 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.74 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.69 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.56 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 96.52 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.49 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 96.32 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.29 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.04 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.64 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.33 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 95.3 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.14 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 95.13 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.12 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.96 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.6 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 94.54 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.54 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.52 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 94.51 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.47 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.36 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.33 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.3 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 94.24 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.24 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.14 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.04 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.02 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.88 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.86 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 93.77 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.63 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.52 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 93.46 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 93.4 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.39 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 93.33 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 93.28 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 93.26 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 93.0 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.95 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 92.93 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.81 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.8 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.7 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 92.64 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.63 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 92.51 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 92.49 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 92.42 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 92.24 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 92.04 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.03 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 91.92 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 91.88 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.87 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 91.75 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 91.65 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.52 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.51 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 91.48 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.37 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 91.32 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 91.13 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 91.1 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 91.07 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 91.05 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 91.01 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 90.96 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 90.91 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.87 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 90.57 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 90.56 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 90.52 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 90.49 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.46 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 90.42 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 90.37 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 90.34 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 90.28 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 90.18 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 90.15 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 90.14 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 90.11 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 90.0 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 89.93 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 89.91 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 89.9 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 89.82 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 89.75 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 89.68 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 89.58 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 89.56 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 89.53 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 89.52 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 89.48 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 89.42 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 89.4 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 89.21 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 89.16 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 89.11 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 89.07 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 89.02 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 89.01 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 88.97 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 88.91 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 88.85 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 88.84 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 88.54 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 88.42 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 88.27 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 88.06 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 88.04 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 87.88 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 87.81 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 87.67 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 87.51 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 87.34 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 87.21 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 87.16 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 87.03 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 86.91 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 86.77 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 86.68 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 86.51 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 86.49 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 86.45 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 86.12 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 86.1 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 85.9 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 85.78 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 85.56 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 85.52 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 85.08 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 84.92 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 84.84 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 84.77 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 84.74 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 84.66 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 84.56 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 84.55 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 84.5 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 84.37 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 84.16 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 84.07 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 83.9 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 83.88 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 83.67 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 83.43 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 83.42 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 83.18 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 82.93 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 82.83 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 82.76 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 82.61 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 82.45 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 82.38 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 82.08 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 81.83 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 81.79 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 81.66 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 81.63 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 81.59 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 81.47 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 81.43 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 81.16 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 81.14 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 80.92 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 80.46 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 80.42 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 80.4 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 80.4 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 80.37 |
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=1.8e-35 Score=344.30 Aligned_cols=247 Identities=18% Similarity=0.192 Sum_probs=197.1
Q ss_pred cCCCceeehhhHHHHHHhhhc-CCCCcEEEEEEecCCCchhHHHHHHHHh----hhccccceEEEEeeccccccccHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRT-GSAGVYKLGIWGIGGIGKTTIAGAVFNK----ISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~-~~~~~~~i~I~G~gGiGKTtLA~~~~~~----~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
....++||+.++++|.++|.. .+.+.++|+|+|||||||||||+++|++ ....|++++|+.+.+.++.. .....
T Consensus 18 ~~~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~-~l~~~ 96 (277)
T d2a5yb3 18 KQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKS-TFDLF 96 (277)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTH-HHHHH
T ss_pred CCCceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHH-HHHHH
Confidence 345678999999999999864 4456889999999999999999999985 55668999999877764322 22223
Q ss_pred HHHHHHHHhcccccc---Cccchh----HHHHHHHhhcCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccchh
Q 000202 259 RKELLSKLLNDRNVK---NFQNIS----VNFQSKRLARKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVL 331 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~---~~~~~~----~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~ 331 (1866)
...++.......... ...... ...+.+.+.++|+|+||||||+.++++.+.. .|||||||||++.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~~------~~srilvTTR~~~v~ 170 (277)
T d2a5yb3 97 TDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE------LRLRCLVTTRDVEIS 170 (277)
T ss_dssp HHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH------TTCEEEEEESBGGGG
T ss_pred HHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHhhhhhhcc------cCceEEEEeehHHHH
Confidence 333333333222111 111111 1346677899999999999999999988754 389999999999999
Q ss_pred ccCccc-eeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecccccCCCHHHHHHHHHHhcc
Q 000202 332 TNCEVD-HIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEI 410 (1866)
Q Consensus 332 ~~~~~~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~~~~~w~~~l~~l~~ 410 (1866)
..+... ++|+|++|+.+||++||++++|....+ +..++++++|+++|+|+||||+++|+.|+.++.++|.+..++|+.
T Consensus 171 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~-~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~ 249 (277)
T d2a5yb3 171 NAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVG-EKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLES 249 (277)
T ss_dssp GGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHH
T ss_pred HhcCCCCceEECCCCCHHHHHHHHHHHhCCccCc-hhhHHHHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhc
Confidence 876544 789999999999999999999876544 456788999999999999999999999999999999999999988
Q ss_pred CCCchhhhhhhcccCCCChhhHHHHHHH
Q 000202 411 VPHMEIQEVLKISYDSLDDSQKRMHDLL 438 (1866)
Q Consensus 411 ~~~~~i~~~l~~Sy~~L~~~~k~~~~~l 438 (1866)
....+|..++.+||++||.+.|.|+.+|
T Consensus 250 ~~~~~v~~il~~sY~~L~~~lk~c~~~l 277 (277)
T d2a5yb3 250 RGLVGVECITPYSYKSLAMALQRCVEVL 277 (277)
T ss_dssp HCSSTTCCCSSSSSSSHHHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHhC
Confidence 7788899999999999999999999864
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=4.9e-35 Score=340.68 Aligned_cols=240 Identities=10% Similarity=0.128 Sum_probs=195.0
Q ss_pred cchhhHHHHHHHHHh---ccCCccEEEEEcCCCchHHHHHHHHhcCcc--cccccceEEEEEecCCCCHHHHHHHHHHHh
Q 000202 980 VNYTQRNVRKIFRYV---NDVTASKIGVYGVGGIGKTAALKALISYPE--VKVMFHVIIWVTVSRYWNTRKIQKQVLRQL 1054 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l---~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~--~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 1054 (1866)
+.||+.++++|+++| .+...++|+|+||||+||||||+++|+... .+.+|++++||++++.++...+...+...+
T Consensus 22 ~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~~~~~ 101 (277)
T d2a5yb3 22 CYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILL 101 (277)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred eeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHHHHHH
Confidence 347888999999988 345678999999999999999999997644 677899999999999998887776665544
Q ss_pred c---cCCC-------CccCHHHHHHHHHHHhCCCcEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhhccCCC
Q 000202 1055 S---LHCK-------DRETDAQVAEKLWQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVCRNMDV 1124 (1866)
Q Consensus 1055 ~---~~~~-------~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~ 1124 (1866)
. .... ...........+.+.|.++|+||||||||+..+|+.+. ..|||||||||++.++..+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~------~~~srilvTTR~~~v~~~~~~ 175 (277)
T d2a5yb3 102 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ------ELRLRCLVTTRDVEISNAASQ 175 (277)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH------HTTCEEEEEESBGGGGGGCCS
T ss_pred HHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHhhhhhhc------ccCceEEEEeehHHHHHhcCC
Confidence 2 2111 11223344556788899999999999999999888764 258999999999999988765
Q ss_pred C-cEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHhhhCCCCcccc
Q 000202 1125 N-MVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHASRKFSLPITIE 1203 (1866)
Q Consensus 1125 ~-~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~ 1203 (1866)
. ..|+|++|+.+|||+||.++++.....+..++++++|+++|+|+||||+++|+.|+. ++.+.|.+..+.+..
T Consensus 176 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~-k~~~~~~~~~~~L~~----- 249 (277)
T d2a5yb3 176 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEP-KTFEKMAQLNNKLES----- 249 (277)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCS-SSHHHHHHHHHHHHH-----
T ss_pred CCceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCCHHHHHHHHHHhcc-CCHHHHHHHHHHHhc-----
Confidence 5 689999999999999999999877767778889999999999999999999999986 578889887766521
Q ss_pred ccchhhHHHHHHHhHhccCCcchhHHHHhh
Q 000202 1204 ECCTEDLIELLKFSFDQLKDHDVKSCFLHC 1233 (1866)
Q Consensus 1204 ~~~~~~i~~~l~~Sy~~L~~~~lk~cfly~ 1233 (1866)
....++..++.+||++||++ +|+||-++
T Consensus 250 -~~~~~v~~il~~sY~~L~~~-lk~c~~~l 277 (277)
T d2a5yb3 250 -RGLVGVECITPYSYKSLAMA-LQRCVEVL 277 (277)
T ss_dssp -HCSSTTCCCSSSSSSSHHHH-HHHHHHTS
T ss_pred -CcHHHHHHHHHHHHhcccHH-HHHHHHhC
Confidence 12456888999999999998 99999764
|
| >d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Toll/Interleukin receptor TIR domain family: Toll/Interleukin receptor TIR domain domain: Toll-like receptor 1, TLR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=5.1e-17 Score=170.12 Aligned_cols=99 Identities=21% Similarity=0.404 Sum_probs=89.9
Q ss_pred CCCCCCccEEEccccccccCchH-HHHHHHHhhCCCceEeeC-CCCCCCCCchhHHHHhhhcceEEEEeccCcccchhhH
Q 000202 10 RNDKKMYDVFLSFRGEDTRDNFT-SHLYSALCQNNVETFIDN-DLKRGDEIPESLLGTIEASTISIIIFSEKYASSKWCL 87 (1866)
Q Consensus 10 ~~~~~~~dvFis~~~~d~~~~~~-~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~ 87 (1866)
....++|||||||+++| ..|| .+|...|+++|+++|+|+ ++.+|+.+.++|.+||++|+++|+|+|++|+.|.||.
T Consensus 7 ~~~~~~yDvFisys~~D--~~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~ 84 (161)
T d1fyva_ 7 LQRNLQFHAFISYSGHD--SFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCH 84 (161)
T ss_dssp SSSCCCEEEEEECCGGG--HHHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHH
T ss_pred cCCCCeeEEEEecChhH--HHHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHH
Confidence 45678999999999999 4577 679999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-hhCCCEEEEEEEE
Q 000202 88 DELLKILECK-RNYGQIVIPVFYR 110 (1866)
Q Consensus 88 ~El~~~~~~~-~~~~~~v~pvf~~ 110 (1866)
.|+..++.+. +.++.++|||+++
T Consensus 85 ~E~~~a~~~~~~~~~~~lIpV~l~ 108 (161)
T d1fyva_ 85 YELYFAHHNLFHEGSNSLILILLE 108 (161)
T ss_dssp HHHHTTSCCCSCSSCSSEEEEESS
T ss_pred HHHHHHHHHHHHcCCCceeEEEEe
Confidence 9999998765 4556789999975
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.61 E-value=1.6e-14 Score=176.95 Aligned_cols=176 Identities=22% Similarity=0.254 Sum_probs=118.2
Q ss_pred CccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcE
Q 000202 1370 SEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQI 1449 (1866)
Q Consensus 1370 ~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~ 1449 (1866)
....+.+++.|++.++.+..+.++..+++|++|+|++| .+..+|+ ++++++|++|++++|.+..+++ ++++++|++
T Consensus 39 ~~~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N-~l~~l~~--l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~ 114 (384)
T d2omza2 39 SQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTG 114 (384)
T ss_dssp CHHHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred CHHHhCCCCEEECCCCCCCCccccccCCCCCEEeCcCC-cCCCCcc--ccCCcccccccccccccccccc-ccccccccc
Confidence 34567789999999999998888888999999999988 6777775 5889999999999999988774 889999999
Q ss_pred EecccccCcccCCccccCCCCCcEEEccCCCCC------------------------------------------cCChh
Q 000202 1450 LILRDCDFLFVLPPEVGSLECLEVLDLRGTEIK------------------------------------------MLPKE 1487 (1866)
Q Consensus 1450 L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~------------------------------------------~lp~~ 1487 (1866)
|++++|..... +. ......+..+....+.+. ..+..
T Consensus 115 L~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (384)
T d2omza2 115 LTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192 (384)
T ss_dssp EECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred ccccccccccc-cc-ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence 99988875432 21 222233333332222111 11233
Q ss_pred hcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeec
Q 000202 1488 IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHF 1567 (1866)
Q Consensus 1488 i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 1567 (1866)
...+++++.|.+..+. ...+ ......++|+.|+++.+... .+..+..+++|+.|+++.
T Consensus 193 ~~~l~~~~~l~l~~n~------i~~~-------~~~~~~~~L~~L~l~~n~l~---------~~~~l~~l~~L~~L~l~~ 250 (384)
T d2omza2 193 LAKLTNLESLIATNNQ------ISDI-------TPLGILTNLDELSLNGNQLK---------DIGTLASLTNLTDLDLAN 250 (384)
T ss_dssp GGGCTTCSEEECCSSC------CCCC-------GGGGGCTTCCEEECCSSCCC---------CCGGGGGCTTCSEEECCS
T ss_pred cccccccceeeccCCc------cCCC-------CcccccCCCCEEECCCCCCC---------Ccchhhcccccchhcccc
Confidence 4555666666554321 0111 12456778889988754322 134567888999999888
Q ss_pred CCccch
Q 000202 1568 PEIECV 1573 (1866)
Q Consensus 1568 ~~l~~~ 1573 (1866)
|.+..+
T Consensus 251 n~l~~~ 256 (384)
T d2omza2 251 NQISNL 256 (384)
T ss_dssp SCCCCC
T ss_pred CccCCC
Confidence 776554
|
| >d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Toll/Interleukin receptor TIR domain family: Toll/Interleukin receptor TIR domain domain: Toll-like receptor 2, TLR2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.4e-16 Score=162.72 Aligned_cols=98 Identities=20% Similarity=0.354 Sum_probs=87.3
Q ss_pred CCCCccEEEccccccccCchH-HHHHHHHhh--CCCceEeeC-CCCCCCCCchhHHHHhhhcceEEEEeccCcccchhhH
Q 000202 12 DKKMYDVFLSFRGEDTRDNFT-SHLYSALCQ--NNVETFIDN-DLKRGDEIPESLLGTIEASTISIIIFSEKYASSKWCL 87 (1866)
Q Consensus 12 ~~~~~dvFis~~~~d~~~~~~-~~l~~~L~~--~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~ 87 (1866)
..+.|||||||+++| +.|| .+|...|++ .|+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|++|+.|.||.
T Consensus 2 ~~~~YDvFiSys~~D--~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~ 79 (149)
T d1fyxa_ 2 RNICYDAFVSYSERD--AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCK 79 (149)
T ss_dssp CSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCCEEEEEEECchhh--HHHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchH
Confidence 568999999999999 4566 568999986 499999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-hhCCCEEEEEEEEe
Q 000202 88 DELLKILECK-RNYGQIVIPVFYRV 111 (1866)
Q Consensus 88 ~El~~~~~~~-~~~~~~v~pvf~~v 111 (1866)
.|+..++... +.++.++|||+++.
T Consensus 80 ~E~~~a~~~~~~~~~~~iIpV~l~~ 104 (149)
T d1fyxa_ 80 YELDFSHFRLFDENNDAAILILLEP 104 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSC
T ss_pred HHHHHHHHHHHHcCCceEEEEEecc
Confidence 9998877654 56678899999863
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.54 E-value=1.8e-13 Score=167.36 Aligned_cols=98 Identities=21% Similarity=0.282 Sum_probs=76.3
Q ss_pred CCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcE
Q 000202 1394 PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEV 1473 (1866)
Q Consensus 1394 ~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~ 1473 (1866)
..+.+|+.|+++++ .+..++ .+ +.+++|++|+|++|.|+.+|+ +++|++|++|++++|.+.. ++ .++++++|+.
T Consensus 41 ~~l~~l~~L~l~~~-~I~~l~-gl-~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~-i~-~l~~l~~L~~ 114 (384)
T d2omza2 41 TDLDQVTTLQADRL-GIKSID-GV-EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTG 114 (384)
T ss_dssp HHHTTCCEEECCSS-CCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCCE
T ss_pred HHhCCCCEEECCCC-CCCCcc-cc-ccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccccccc-cc-cccccccccc
Confidence 35678999999877 566663 33 789999999999999999985 9999999999999998654 44 4889999999
Q ss_pred EEccCCCCCcCChhhcCCCccceec
Q 000202 1474 LDLRGTEIKMLPKEIGKLTSLRYLT 1498 (1866)
Q Consensus 1474 L~l~~~~i~~lp~~i~~L~~L~~L~ 1498 (1866)
|+++++.++.++.. .....+..+.
T Consensus 115 L~~~~~~~~~~~~~-~~~~~~~~~~ 138 (384)
T d2omza2 115 LTLFNNQITDIDPL-KNLTNLNRLE 138 (384)
T ss_dssp EECCSSCCCCCGGG-TTCTTCSEEE
T ss_pred cccccccccccccc-cccccccccc
Confidence 99999988877543 2333444433
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.51 E-value=3.1e-13 Score=159.33 Aligned_cols=94 Identities=26% Similarity=0.350 Sum_probs=55.3
Q ss_pred cEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEecccccCcccCCccccCCCCCcEEEccC
Q 000202 1400 LTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRG 1478 (1866)
Q Consensus 1400 ~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~ 1478 (1866)
++++-+++ .+..+|..+ .++|++|+|++|+|+.+|+ ++.++++|++|++++|.+....|..+.++++|++|++++
T Consensus 13 ~~~~C~~~-~L~~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~ 88 (305)
T d1xkua_ 13 RVVQCSDL-GLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88 (305)
T ss_dssp TEEECTTS-CCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCC-CCCccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence 44444332 355555544 2456666666666666664 466666677777766666555566666667777777777
Q ss_pred CCCCcCChhhcCCCccceecc
Q 000202 1479 TEIKMLPKEIGKLTSLRYLTV 1499 (1866)
Q Consensus 1479 ~~i~~lp~~i~~L~~L~~L~l 1499 (1866)
|.++.+|..+. ..|..|..
T Consensus 89 n~l~~l~~~~~--~~l~~L~~ 107 (305)
T d1xkua_ 89 NQLKELPEKMP--KTLQELRV 107 (305)
T ss_dssp SCCSBCCSSCC--TTCCEEEC
T ss_pred CccCcCccchh--hhhhhhhc
Confidence 76666665432 34445444
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.38 E-value=7e-12 Score=150.88 Aligned_cols=102 Identities=25% Similarity=0.334 Sum_probs=66.7
Q ss_pred ccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEeccc
Q 000202 1375 THAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRD 1454 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 1454 (1866)
.+++.|+++++.++.+|+. .++|++|+|++| .+..+|.. +.+|+.|++++|+++.++.- ...|++|++++
T Consensus 38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N-~l~~lp~~----~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~ 107 (353)
T d1jl5a_ 38 RQAHELELNNLGLSSLPEL--PPHLESLVASCN-SLTELPEL----PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSN 107 (353)
T ss_dssp HTCSEEECTTSCCSCCCSC--CTTCSEEECCSS-CCSSCCCC----CTTCCEEECCSSCCSCCCSC---CTTCCEEECCS
T ss_pred cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCC-CCcccccc----hhhhhhhhhhhcccchhhhh---ccccccccccc
Confidence 3577888888888777743 457777777766 56666643 35677777777776665531 13577777777
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCChhh
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEI 1488 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i 1488 (1866)
|. +..+|. ++++++|++|+++++.+...|..+
T Consensus 108 n~-l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~ 139 (353)
T d1jl5a_ 108 NQ-LEKLPE-LQNSSFLKIIDVDNNSLKKLPDLP 139 (353)
T ss_dssp SC-CSSCCC-CTTCTTCCEEECCSSCCSCCCCCC
T ss_pred cc-cccccc-hhhhccceeecccccccccccccc
Confidence 76 345663 566777777777777666655443
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.37 E-value=1.6e-11 Score=147.57 Aligned_cols=113 Identities=24% Similarity=0.321 Sum_probs=54.9
Q ss_pred ccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEeccc
Q 000202 1375 THAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRD 1454 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 1454 (1866)
++++.|++++|.++.+|.. ..+|+.|++++| .+..++. -.+.|++|++++|.+..+|. ++.+.+|++|++++
T Consensus 58 ~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n-~l~~l~~----lp~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~ 129 (353)
T d1jl5a_ 58 PHLESLVASCNSLTELPEL--PQSLKSLLVDNN-NLKALSD----LPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDN 129 (353)
T ss_dssp TTCSEEECCSSCCSSCCCC--CTTCCEEECCSS-CCSCCCS----CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCS
T ss_pred CCCCEEECCCCCCcccccc--hhhhhhhhhhhc-ccchhhh----hccccccccccccccccccc-hhhhccceeecccc
Confidence 4556666666666655532 345566666554 3333332 11345666666666665553 45556666666655
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccc
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVF 1500 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 1500 (1866)
|... ..|.. ...+..|.+..+.... +..++.++.++.|.+.
T Consensus 130 ~~~~-~~~~~---~~~l~~l~~~~~~~~~-~~~l~~l~~l~~L~l~ 170 (353)
T d1jl5a_ 130 NSLK-KLPDL---PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYAD 170 (353)
T ss_dssp SCCS-CCCCC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECC
T ss_pred cccc-ccccc---cccccchhhccccccc-cccccccccceecccc
Confidence 5532 22322 2334444444443322 1234445555555443
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=4.5e-12 Score=145.68 Aligned_cols=173 Identities=22% Similarity=0.229 Sum_probs=88.1
Q ss_pred cCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecc
Q 000202 1376 HAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILR 1453 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~ 1453 (1866)
+++.|++++|.+..+| .+..+++|+.|+|++| .+..+|. ++.+++|++|+|++|.+...|..+..+++|++|+++
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~ 108 (266)
T d1p9ag_ 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108 (266)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC--CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred CCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc--cccccccccccccccccccccccccccccccccccc
Confidence 4555555555555554 2345555555555555 3444443 244555555666555555555555555555555555
Q ss_pred cccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEe
Q 000202 1454 DCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETL 1532 (1866)
Q Consensus 1454 ~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L 1532 (1866)
+|.+....+..+..+.+|++|++++|.++.+|.. +..+++|+.|++..+. +..+ +...+..+++|+.|
T Consensus 109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~------l~~~-----~~~~~~~l~~L~~L 177 (266)
T d1p9ag_ 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN------LTEL-----PAGLLNGLENLDTL 177 (266)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC------CSCC-----CTTTTTTCTTCCEE
T ss_pred ccccceeeccccccccccccccccccccceeccccccccccchhccccccc------cccc-----Ccccccccccccee
Confidence 5554444444555555555555555555555433 3445555555554321 1111 11224455555566
Q ss_pred ecccCCCCCccccccccccccccCCCCCCEEEeecCCc
Q 000202 1533 SIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEI 1570 (1866)
Q Consensus 1533 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 1570 (1866)
+++.+ ....++..+..+++|+.|+|++|..
T Consensus 178 ~Ls~N--------~L~~lp~~~~~~~~L~~L~L~~Np~ 207 (266)
T d1p9ag_ 178 LLQEN--------SLYTIPKGFFGSHLLPFAFLHGNPW 207 (266)
T ss_dssp ECCSS--------CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred ecccC--------CCcccChhHCCCCCCCEEEecCCCC
Confidence 55532 2223444455555556666555543
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.33 E-value=2.9e-12 Score=151.44 Aligned_cols=62 Identities=15% Similarity=0.017 Sum_probs=37.5
Q ss_pred ccccccEEeEecCccCccccchhhhhhccccceeeeccccccc-eecccCccccccccCCCCcCEEeccCCccc
Q 000202 1715 SFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVK-SIILDGEITYSSCIMLPSLKKLRLHHLPEL 1787 (1866)
Q Consensus 1715 ~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~-~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L 1787 (1866)
.+++|+.|++++| +++...| ..+.++++|++|++++| +++ .+|. ...+++|+.|.+.+.+.|
T Consensus 242 ~~~~L~~L~Ls~N-~l~g~iP-~~l~~L~~L~~L~Ls~N-~l~g~iP~--------~~~L~~L~~l~l~~N~~l 304 (313)
T d1ogqa_ 242 LSKNLNGLDLRNN-RIYGTLP-QGLTQLKFLHSLNVSFN-NLCGEIPQ--------GGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CCTTCCEEECCSS-CCEECCC-GGGGGCTTCCEEECCSS-EEEEECCC--------STTGGGSCGGGTCSSSEE
T ss_pred cccccccccCccC-eecccCC-hHHhCCCCCCEEECcCC-cccccCCC--------cccCCCCCHHHhCCCccc
Confidence 4567778888777 5553223 35677888888888876 344 3331 124556666666665544
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.33 E-value=3.2e-11 Score=141.78 Aligned_cols=172 Identities=20% Similarity=0.218 Sum_probs=125.7
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEeccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRD 1454 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~ 1454 (1866)
..+.++..++.+..+|.-. .+++++|+|++| .+..+|+..|.++++|++|++++|.+..+ |..+.++++|++|++++
T Consensus 11 ~~~~~~C~~~~L~~lP~~l-~~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~ 88 (305)
T d1xkua_ 11 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88 (305)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCEEEecCCCCCccCCCC-CCCCCEEECcCC-cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence 4567788888899998522 368999999988 78999987779999999999999999987 56799999999999999
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEee
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLS 1533 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~ 1533 (1866)
|+ +..+|..+ ...|..|++.+|.+..++.. +.....+..+......... . ......+..+++|+.++
T Consensus 89 n~-l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~----~-----~~~~~~~~~l~~L~~l~ 156 (305)
T d1xkua_ 89 NQ-LKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----S-----GIENGAFQGMKKLSYIR 156 (305)
T ss_dssp SC-CSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----G-----GBCTTGGGGCTTCCEEE
T ss_pred Cc-cCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccc----c-----CCCccccccccccCccc
Confidence 98 55677654 46899999999999988765 5556666666654322110 0 01123467788999999
Q ss_pred cccCCCCCccccccccccccccCCCCCCEEEeecCCcc
Q 000202 1534 IDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIE 1571 (1866)
Q Consensus 1534 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 1571 (1866)
+..+... .++. ..+++|+.|++++|...
T Consensus 157 l~~n~l~--------~l~~--~~~~~L~~L~l~~n~~~ 184 (305)
T d1xkua_ 157 IADTNIT--------TIPQ--GLPPSLTELHLDGNKIT 184 (305)
T ss_dssp CCSSCCC--------SCCS--SCCTTCSEEECTTSCCC
T ss_pred cccCCcc--------ccCc--ccCCccCEEECCCCcCC
Confidence 8754321 1222 23578888988776543
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.29 E-value=4.7e-12 Score=149.61 Aligned_cols=176 Identities=18% Similarity=0.236 Sum_probs=130.0
Q ss_pred cCcEEEccCCCCC---CCC-CCCCCCcccEEEccC-CcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcE
Q 000202 1376 HAKMIFFMDNDLQ---TLP-GRPSCPNLLTLFLQR-NCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQI 1449 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~---~l~-~~~~~~~L~~L~L~~-~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~ 1449 (1866)
+++.|++.++.+. .+| .+.++++|++|+|++ |...+.+|+.+ +++++|++|+|++|++..+ |..+..+.+|++
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~ 129 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccc-ccccccchhhhccccccccccccccchhhhcc
Confidence 6788999998887 365 467899999999987 44455788886 7899999999999999855 567889999999
Q ss_pred EecccccCcccCCccccCCCCCcEEEccCCCCC-cCChhhcCCCcc-ceeccccccccCCCccccCCCCCCChhhhhccc
Q 000202 1450 LILRDCDFLFVLPPEVGSLECLEVLDLRGTEIK-MLPKEIGKLTSL-RYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQ 1527 (1866)
Q Consensus 1450 L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~~L-~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~ 1527 (1866)
|++++|.....+|..++++++|+++++++|.+. .+|..++.+.+| +.+.+.... + .... ...+..+.
T Consensus 130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~-l-----~~~~-----~~~~~~l~ 198 (313)
T d1ogqa_ 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-L-----TGKI-----PPTFANLN 198 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-E-----EEEC-----CGGGGGCC
T ss_pred cccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccc-c-----cccc-----cccccccc
Confidence 999999999999999999999999999999888 789999888887 556554321 1 1111 11233333
Q ss_pred cCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCcc
Q 000202 1528 ALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIE 1571 (1866)
Q Consensus 1528 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 1571 (1866)
.+ .+++..+ ......+..+..+++|+.|+++.+.+.
T Consensus 199 ~~-~l~l~~~-------~~~~~~~~~~~~~~~l~~l~~~~~~l~ 234 (313)
T d1ogqa_ 199 LA-FVDLSRN-------MLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp CS-EEECCSS-------EEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred cc-ccccccc-------ccccccccccccccccccccccccccc
Confidence 32 4554421 122235566678888998888776543
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.5e-11 Score=141.32 Aligned_cols=193 Identities=21% Similarity=0.180 Sum_probs=149.0
Q ss_pred cccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecc
Q 000202 1374 WTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILR 1453 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~ 1453 (1866)
...+..++.+++.++.+|... .+++++|+|++| .+..+|...|..+++|++|+|++|.|+.+|. ++.+++|++|+|+
T Consensus 9 ~~~~~~v~C~~~~L~~iP~~l-p~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls 85 (266)
T d1p9ag_ 9 VASHLEVNCDKRNLTALPPDL-PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLS 85 (266)
T ss_dssp STTCCEEECTTSCCSSCCSCC-CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECC
T ss_pred cCCCeEEEccCCCCCeeCcCc-CcCCCEEECcCC-cCCCcCHHHhhcccccccccccccccccccc-ccccccccccccc
Confidence 445567788999999998422 258999999988 6888998888999999999999999998874 5789999999999
Q ss_pred cccCcccCCccccCCCCCcEEEccCCCCCcCCh-hhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEe
Q 000202 1454 DCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETL 1532 (1866)
Q Consensus 1454 ~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L 1532 (1866)
+|.+ ...|..+.++++|+.|++++|.+..++. .+..+.+|++|.+.... ...++ ...+..+++|+.|
T Consensus 86 ~N~l-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~------l~~l~-----~~~~~~l~~l~~l 153 (266)
T d1p9ag_ 86 HNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE------LKTLP-----PGLLTPTPKLEKL 153 (266)
T ss_dssp SSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC------CCCCC-----TTTTTTCTTCCEE
T ss_pred cccc-cccccccccccccccccccccccceeeccccccccccccccccccc------cceec-----cccccccccchhc
Confidence 9985 5668889999999999999999988754 47888999999886532 11222 2346678999999
Q ss_pred ecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEE
Q 000202 1533 SIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKF 1592 (1866)
Q Consensus 1533 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l 1592 (1866)
+++.+... ......+..+++|+.|+|+.|.++.+++.+. ...+|+.+.+
T Consensus 154 ~l~~N~l~-------~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~----~~~~L~~L~L 202 (266)
T d1p9ag_ 154 SLANNNLT-------ELPAGLLNGLENLDTLLLQENSLYTIPKGFF----GSHLLPFAFL 202 (266)
T ss_dssp ECTTSCCS-------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCCCSEEEC
T ss_pred cccccccc-------ccCccccccccccceeecccCCCcccChhHC----CCCCCCEEEe
Confidence 99854322 1233457889999999999999988764332 2345555554
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.26 E-value=2.4e-11 Score=132.67 Aligned_cols=167 Identities=24% Similarity=0.275 Sum_probs=127.0
Q ss_pred CCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCC
Q 000202 1368 PPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCL 1447 (1866)
Q Consensus 1368 ~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L 1447 (1866)
......+.+++.|++.++.+..++++..+++|++|++++| .+..+++ ++++++|++|++++|.+..+|. ++++++|
T Consensus 33 ~~~~~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N-~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L 108 (199)
T d2omxa2 33 TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNL 108 (199)
T ss_dssp EECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred ccCHHHhcCCCEEECCCCCCCCccccccCCCcCcCccccc-cccCccc--ccCCcccccccccccccccccc-ccccccc
Confidence 3345567889999999999999888888999999999988 5666665 5789999999999999888874 8899999
Q ss_pred cEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccc
Q 000202 1448 QILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQ 1527 (1866)
Q Consensus 1448 ~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~ 1527 (1866)
++|++++|.... . ..+.++++|+.|++++|.+..+| .+..+++|+.|++.++. +. .+ ..+++++
T Consensus 109 ~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~-l~-----~l-------~~l~~l~ 172 (199)
T d2omxa2 109 TGLTLFNNQITD-I-DPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQ-VT-----DL-------KPLANLT 172 (199)
T ss_dssp SEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CC-----CC-------GGGTTCT
T ss_pred cccccccccccc-c-cccchhhhhHHhhhhhhhhcccc-ccccccccccccccccc-cc-----CC-------ccccCCC
Confidence 999999887554 2 45888999999999999988776 58888999999886532 11 11 1256777
Q ss_pred cCcEeecccCCCCCccccccccccccccCCCCCCEE
Q 000202 1528 ALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSL 1563 (1866)
Q Consensus 1528 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 1563 (1866)
+|+.|+++.+... . ...+..+++|+.|
T Consensus 173 ~L~~L~ls~N~i~--------~-i~~l~~L~~L~~L 199 (199)
T d2omxa2 173 TLERLDISSNKVS--------D-ISVLAKLTNLESL 199 (199)
T ss_dssp TCCEEECCSSCCC--------C-CGGGGGCTTCSEE
T ss_pred CCCEEECCCCCCC--------C-CccccCCCCCCcC
Confidence 8888887754321 1 2345666666654
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.23 E-value=3.6e-11 Score=132.42 Aligned_cols=167 Identities=25% Similarity=0.328 Sum_probs=131.2
Q ss_pred ccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEE
Q 000202 1371 EEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQIL 1450 (1866)
Q Consensus 1371 ~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L 1450 (1866)
...+..++.+++.++.+..++++..+++|+.|++++| .+..+++ ++.+++|++|++++|.++.+| .++.+++|+.|
T Consensus 42 ~~~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n-~i~~l~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L 117 (210)
T d1h6ta2 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSL 117 (210)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEE
T ss_pred HHHhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCc-cccCccc--cccCccccccccccccccccc-ccccccccccc
Confidence 4457789999999999999888888999999999988 5666664 377999999999999999887 58899999999
Q ss_pred ecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCc
Q 000202 1451 ILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALE 1530 (1866)
Q Consensus 1451 ~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~ 1530 (1866)
++++|... .+ ..+.++++|+.+++++|.++.++ .+.++++|+++++.++. + ..+ ..+.++++|+
T Consensus 118 ~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~-l-----~~i-------~~l~~l~~L~ 181 (210)
T d1h6ta2 118 SLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQ-I-----SDI-------VPLAGLTKLQ 181 (210)
T ss_dssp ECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-C-----CCC-------GGGTTCTTCC
T ss_pred cccccccc-cc-ccccccccccccccccccccccc-ccccccccccccccccc-c-----ccc-------ccccCCCCCC
Confidence 99999853 34 46888999999999999988754 57788999999886532 1 111 1267788899
Q ss_pred EeecccCCCCCccccccccccccccCCCCCCEEEee
Q 000202 1531 TLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFH 1566 (1866)
Q Consensus 1531 ~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 1566 (1866)
.|+++.+.. ..+ ..+..+++|+.|+|+
T Consensus 182 ~L~Ls~N~i--------~~l-~~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 182 NLYLSKNHI--------SDL-RALAGLKNLDVLELF 208 (210)
T ss_dssp EEECCSSCC--------CBC-GGGTTCTTCSEEEEE
T ss_pred EEECCCCCC--------CCC-hhhcCCCCCCEEEcc
Confidence 999885432 222 357888889988885
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=2.9e-11 Score=139.98 Aligned_cols=83 Identities=12% Similarity=0.071 Sum_probs=51.7
Q ss_pred CCcEEEccCCCCCCCChhhcCCCCCcEEecccccCccc-CCccccCCCCCcEEEccCCCCC-cCChhhcCCCccceeccc
Q 000202 1423 SLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFV-LPPEVGSLECLEVLDLRGTEIK-MLPKEIGKLTSLRYLTVF 1500 (1866)
Q Consensus 1423 ~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~-lP~~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~ 1500 (1866)
.+..+.++.+.+...........+|++|+|++|.+... ++..+.++++|++|++++|.+. ..+..++++++|++|+++
T Consensus 24 ~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls 103 (284)
T d2astb2 24 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 103 (284)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred cceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence 34566666555443333344556777777777765432 3344567777888888777766 345567777777777776
Q ss_pred ccccc
Q 000202 1501 FFGSM 1505 (1866)
Q Consensus 1501 ~~~~~ 1505 (1866)
+|..+
T Consensus 104 ~c~~i 108 (284)
T d2astb2 104 GCSGF 108 (284)
T ss_dssp TCBSC
T ss_pred ccccc
Confidence 66443
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=8.5e-11 Score=136.34 Aligned_cols=181 Identities=23% Similarity=0.356 Sum_probs=108.0
Q ss_pred ccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEcc-CCCCCCC-ChhhcCCCCCcEE
Q 000202 1375 THAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLS-KTRIKSL-PETLVNLKCLQIL 1450 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls-~~~i~~l-p~~i~~L~~L~~L 1450 (1866)
+.++.|++++|.++.+|. +..+++|+.|++++| .+..++...+..+..++.|+.. .+.+..+ |..++++++|++|
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L 110 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECcCCcCCCCCHHHhhccccccccccccc-cccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence 345677777777776663 556777777777765 4556666666666667766654 3345555 3556667777777
Q ss_pred ecccccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccccC
Q 000202 1451 ILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQAL 1529 (1866)
Q Consensus 1451 ~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L 1529 (1866)
++++|......+..++.+.+|+.+++++|.++.+|.. +..+++|++|+++++. +..++ ...+.++++|
T Consensus 111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~------l~~l~-----~~~f~~l~~L 179 (284)
T d1ozna_ 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR------ISSVP-----ERAFRGLHSL 179 (284)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CCEEC-----TTTTTTCTTC
T ss_pred ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCc------ccccc-----hhhhcccccc
Confidence 7777765444455566666777777777777766543 5566677777665431 11111 1234566666
Q ss_pred cEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchH
Q 000202 1530 ETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVA 1574 (1866)
Q Consensus 1530 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 1574 (1866)
+.+.+..+... ...+..+..+++|+.|+++.|.+..++
T Consensus 180 ~~l~l~~N~l~-------~i~~~~f~~l~~L~~L~l~~N~i~~~~ 217 (284)
T d1ozna_ 180 DRLLLHQNRVA-------HVHPHAFRDLGRLMTLYLFANNLSALP 217 (284)
T ss_dssp CEEECCSSCCC-------EECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred chhhhhhcccc-------ccChhHhhhhhhccccccccccccccc
Confidence 66666543221 123445566666777777666665543
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=9.3e-11 Score=116.35 Aligned_cols=103 Identities=25% Similarity=0.338 Sum_probs=65.0
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccC
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDF 1457 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~ 1457 (1866)
|.|++++|.++.++.+..+++|+.|++++| .+..+|+.+ +.+++|++|++++|.|+.+| .++++++|++|++++|.+
T Consensus 1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N-~l~~lp~~~-~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i 77 (124)
T d1dcea3 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHN-RLRALPPAL-AALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL 77 (124)
T ss_dssp SEEECTTSCCSSCCCGGGGTTCCEEECCSS-CCCCCCGGG-GGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCCCCCcccccCCCCCEEECCCC-ccCcchhhh-hhhhcccccccccccccccC-ccccccccCeEECCCCcc
Confidence 456677777777666666666777777665 455666544 55666777777776666665 366666666666666664
Q ss_pred cccCC--ccccCCCCCcEEEccCCCCCcC
Q 000202 1458 LFVLP--PEVGSLECLEVLDLRGTEIKML 1484 (1866)
Q Consensus 1458 ~~~lP--~~i~~L~~L~~L~l~~~~i~~l 1484 (1866)
. .+| ..++.+++|++|++++|.+...
T Consensus 78 ~-~~~~~~~l~~~~~L~~L~l~~N~i~~~ 105 (124)
T d1dcea3 78 Q-QSAAIQPLVSCPRLVLLNLQGNSLCQE 105 (124)
T ss_dssp C-SSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred C-CCCCchhhcCCCCCCEEECCCCcCCcC
Confidence 3 232 3456666666666666665533
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.10 E-value=7.4e-10 Score=123.51 Aligned_cols=194 Identities=22% Similarity=0.274 Sum_probs=147.7
Q ss_pred CCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCC
Q 000202 1365 LTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNL 1444 (1866)
Q Consensus 1365 ~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L 1444 (1866)
.+.......+.+++.|++.+|.+..++++..+++|+.|++++| .+..+++ +..+++|++|++++|.++.++ .+.++
T Consensus 31 ~~d~~~~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n-~i~~~~~--l~~l~~l~~l~~~~n~~~~i~-~l~~l 106 (227)
T d1h6ua2 31 VTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKNVS-AIAGL 106 (227)
T ss_dssp TTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTC
T ss_pred cCCcCCHHHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCc-eeecccc--ccccccccccccccccccccc-ccccc
Confidence 3344455678899999999999999988899999999999988 4555544 578999999999999998876 58899
Q ss_pred CCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhh
Q 000202 1445 KCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILS 1524 (1866)
Q Consensus 1445 ~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~ 1524 (1866)
++|++|++++|..... ..+.....+..+.++++.+...+ .+.++++|++|.+..+.-. ....+.
T Consensus 107 ~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~-------------~~~~l~ 170 (227)
T d1h6ua2 107 QSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVS-------------DLTPLA 170 (227)
T ss_dssp TTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCC-------------CCGGGT
T ss_pred cccccccccccccccc--chhccccchhhhhchhhhhchhh-hhccccccccccccccccc-------------cchhhc
Confidence 9999999999875432 34677889999999999887654 4778889999988654211 112367
Q ss_pred ccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEE
Q 000202 1525 RLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKF 1592 (1866)
Q Consensus 1525 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l 1592 (1866)
++++|+.|+++.+.. .. ...+..+++|+.|+++.|.++.++. ....++|+.|.+
T Consensus 171 ~l~~L~~L~Ls~n~l--------~~-l~~l~~l~~L~~L~Ls~N~lt~i~~-----l~~l~~L~~L~l 224 (227)
T d1h6ua2 171 NLSKLTTLKADDNKI--------SD-ISPLASLPNLIEVHLKNNQISDVSP-----LANTSNLFIVTL 224 (227)
T ss_dssp TCTTCCEEECCSSCC--------CC-CGGGGGCTTCCEEECTTSCCCBCGG-----GTTCTTCCEEEE
T ss_pred ccccceecccCCCcc--------CC-ChhhcCCCCCCEEECcCCcCCCCcc-----cccCCCCCEEEe
Confidence 889999999985432 11 2447889999999999999887642 123456666655
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.09 E-value=2.2e-10 Score=125.99 Aligned_cols=153 Identities=22% Similarity=0.278 Sum_probs=126.5
Q ss_pred CCCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhc
Q 000202 1363 AGLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLV 1442 (1866)
Q Consensus 1363 ~~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~ 1442 (1866)
+.+...+.+..+++|+.|++++|.+..++.+..+++|+.|++++| .+..+|. +..+++|+.|++++|.+..++ .+.
T Consensus 56 ~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~l~~~~~~~~~-~l~ 131 (210)
T d1h6ta2 56 SDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN-KVKDLSS--LKDLKKLKSLSLEHNGISDIN-GLV 131 (210)
T ss_dssp SCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCGGG--GTTCTTCCEEECTTSCCCCCG-GGG
T ss_pred CCCCCchhHhhCCCCCEEeCCCccccCccccccCccccccccccc-ccccccc--ccccccccccccccccccccc-ccc
Confidence 344445567788999999999999999988889999999999988 5777764 478999999999999988775 588
Q ss_pred CCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhh
Q 000202 1443 NLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDI 1522 (1866)
Q Consensus 1443 ~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~ 1522 (1866)
.+++|+.+++++|.+.. +..+.++++|+++++++|.++.++. ++++++|++|+++++. ++ .++ .
T Consensus 132 ~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~-i~-----~l~-------~ 195 (210)
T d1h6ta2 132 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-IS-----DLR-------A 195 (210)
T ss_dssp GCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CC-----BCG-------G
T ss_pred ccccccccccccccccc--ccccccccccccccccccccccccc-ccCCCCCCEEECCCCC-CC-----CCh-------h
Confidence 99999999999998543 3467889999999999999998864 8999999999997642 21 222 3
Q ss_pred hhccccCcEeecc
Q 000202 1523 LSRLQALETLSID 1535 (1866)
Q Consensus 1523 l~~L~~L~~L~l~ 1535 (1866)
+.+|++|+.|+++
T Consensus 196 l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 196 LAGLKNLDVLELF 208 (210)
T ss_dssp GTTCTTCSEEEEE
T ss_pred hcCCCCCCEEEcc
Confidence 7789999999986
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=8.2e-10 Score=127.85 Aligned_cols=203 Identities=22% Similarity=0.241 Sum_probs=151.0
Q ss_pred hhhHHHHhcccCCCCCCC--CccccccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEE
Q 000202 1352 PEAYQFLLGARAGLTEPP--SEEEWTHAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVL 1427 (1866)
Q Consensus 1352 ~~~~~~l~~~~~~~~~~~--~~~~~~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L 1427 (1866)
|..++.+....+.++..+ .+..+++|+.+++++|.+..++. +..+..+..+....+..+..+++..|.++++|++|
T Consensus 31 p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L 110 (284)
T d1ozna_ 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (284)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence 333333444444454433 36778899999999999886663 45678888888877778888888888999999999
Q ss_pred EccCCCCCCCC-hhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCCh-hhcCCCccceecccccccc
Q 000202 1428 NLSKTRIKSLP-ETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTVFFFGSM 1505 (1866)
Q Consensus 1428 ~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~ 1505 (1866)
++++|.+..++ ..++.+.+|+++++++|.+....|..+..+.+|++|++++|.++.+|. .+.++++|++|.+.++.-
T Consensus 111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l- 189 (284)
T d1ozna_ 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV- 189 (284)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-
T ss_pred ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccc-
Confidence 99999988765 567778999999999998765556678889999999999999998854 578899999998865321
Q ss_pred CCCccccCCCCCCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1506 YKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1506 ~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
..+. ...+..+++|+.|+++.+... ......+..+++|+.|+++.|.+.+
T Consensus 190 -----~~i~-----~~~f~~l~~L~~L~l~~N~i~-------~~~~~~~~~~~~L~~L~l~~N~l~C 239 (284)
T d1ozna_ 190 -----AHVH-----PHAFRDLGRLMTLYLFANNLS-------ALPTEALAPLRALQYLRLNDNPWVC 239 (284)
T ss_dssp -----CEEC-----TTTTTTCTTCCEEECCSSCCS-------CCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred -----cccC-----hhHhhhhhhcccccccccccc-------cccccccccccccCEEEecCCCCCC
Confidence 1121 234678889999999854332 1234567888999999999887654
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.07 E-value=5.5e-10 Score=121.56 Aligned_cols=150 Identities=23% Similarity=0.340 Sum_probs=121.8
Q ss_pred CCCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhc
Q 000202 1363 AGLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLV 1442 (1866)
Q Consensus 1363 ~~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~ 1442 (1866)
.++.....+..+++|++|++++|.+..++++..+++|+.|++++| .+..++. ++++++|++|++++|.+..++ .+.
T Consensus 50 ~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~l~~~~~~~~~-~~~ 125 (199)
T d2omxa2 50 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNNQITDID-PLK 125 (199)
T ss_dssp SCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEECCSSCCCCCG-GGT
T ss_pred CCCCCccccccCCCcCcCccccccccCcccccCCccccccccccc-ccccccc--ccccccccccccccccccccc-ccc
Confidence 344445557788999999999999999888899999999999988 4555654 578999999999999887765 588
Q ss_pred CCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhh
Q 000202 1443 NLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDI 1522 (1866)
Q Consensus 1443 ~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~ 1522 (1866)
.+++|+.|++++|.+ ..+| .+..+++|+.|++.+|.++.+| .++++++|++|+++++. ++. ++ .
T Consensus 126 ~l~~L~~L~l~~n~l-~~~~-~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~-i~~-----i~-------~ 189 (199)
T d2omxa2 126 NLTNLNRLELSSNTI-SDIS-ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNK-VSD-----IS-------V 189 (199)
T ss_dssp TCTTCSEEECCSSCC-CCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCC-----CG-------G
T ss_pred hhhhhHHhhhhhhhh-cccc-cccccccccccccccccccCCc-cccCCCCCCEEECCCCC-CCC-----Cc-------c
Confidence 899999999999985 4444 6889999999999999999887 48999999999997642 221 11 2
Q ss_pred hhccccCcEe
Q 000202 1523 LSRLQALETL 1532 (1866)
Q Consensus 1523 l~~L~~L~~L 1532 (1866)
+++|++|+.|
T Consensus 190 l~~L~~L~~L 199 (199)
T d2omxa2 190 LAKLTNLESL 199 (199)
T ss_dssp GGGCTTCSEE
T ss_pred ccCCCCCCcC
Confidence 6678888765
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=1.5e-10 Score=120.96 Aligned_cols=125 Identities=20% Similarity=0.223 Sum_probs=70.9
Q ss_pred ccccccCcEEEccCCCCCCCCCC-CCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhh-cCCCCCc
Q 000202 1371 EEEWTHAKMIFFMDNDLQTLPGR-PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETL-VNLKCLQ 1448 (1866)
Q Consensus 1371 ~~~~~~l~~l~l~~~~l~~l~~~-~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i-~~L~~L~ 1448 (1866)
+.+...++.|++++|.+..++.. ..+++|+.|+|++| .+..++. +..+++|++|++++|.++.+|+.+ ..+++|+
T Consensus 14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCC-CCCccCC--cccCcchhhhhcccccccCCCccccccccccc
Confidence 33444566666666666666543 34566666666665 3444432 355666666666666666665433 4566666
Q ss_pred EEecccccCcccCC--ccccCCCCCcEEEccCCCCCcCCh----hhcCCCccceecc
Q 000202 1449 ILILRDCDFLFVLP--PEVGSLECLEVLDLRGTEIKMLPK----EIGKLTSLRYLTV 1499 (1866)
Q Consensus 1449 ~L~L~~~~~~~~lP--~~i~~L~~L~~L~l~~~~i~~lp~----~i~~L~~L~~L~l 1499 (1866)
+|++++|.+ ..++ ..+..+++|++|++++|.++.+|. .+..+++|++|+.
T Consensus 91 ~L~L~~N~i-~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 91 ELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp EEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred cceeccccc-cccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence 666666653 2333 245556666666666666655553 2555566665554
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=1.2e-10 Score=121.72 Aligned_cols=135 Identities=16% Similarity=0.158 Sum_probs=100.3
Q ss_pred CCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCC
Q 000202 1389 TLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSL 1468 (1866)
Q Consensus 1389 ~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L 1468 (1866)
..|.+.++.+++.|+|++| .+..++. .+..+++|++|+|++|.|+.++ .+..+++|++|++++|.+....|..+..+
T Consensus 10 ~~~~~~n~~~lr~L~L~~n-~I~~i~~-~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l 86 (162)
T d1a9na_ 10 QAAQYTNAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQAL 86 (162)
T ss_dssp TSCEEECTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred hhHhccCcCcCcEEECCCC-CCCccCc-cccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccc
Confidence 4555667788999999988 6777864 4577899999999999999885 58899999999999998654444445679
Q ss_pred CCCcEEEccCCCCCcCCh--hhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeec
Q 000202 1469 ECLEVLDLRGTEIKMLPK--EIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534 (1866)
Q Consensus 1469 ~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l 1534 (1866)
++|++|++++|.++.++. .+..+++|++|++.++.- ...+. .....+..+++|+.|+.
T Consensus 87 ~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i------~~~~~--~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 87 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV------TNKKH--YRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG------GGSTT--HHHHHHHHCTTCSEETT
T ss_pred cccccceeccccccccccccccccccccchhhcCCCcc------ccccc--hHHHHHHHCCCcCeeCC
Confidence 999999999999988864 578889999998865421 11111 01123566777777763
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.01 E-value=5.4e-10 Score=120.88 Aligned_cols=123 Identities=18% Similarity=0.188 Sum_probs=103.0
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEeccccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDCD 1456 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~ 1456 (1866)
++++.+++.++.+|.-. .++++.|+|++|.....++...|..+++|+.|+|++|.+..+| ..+..+.+|++|+|++|+
T Consensus 11 ~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~ 89 (192)
T d1w8aa_ 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEEeCCCcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence 56888899999998422 2689999999885445577777899999999999999998665 678889999999999999
Q ss_pred CcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceecccc
Q 000202 1457 FLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1457 ~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~ 1501 (1866)
+....|..|.+|++|++|+|++|.|+.+|.+ +..+++|++|++++
T Consensus 90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~ 135 (192)
T d1w8aa_ 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred ccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccc
Confidence 7766677889999999999999999998765 78899999998854
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.00 E-value=1.1e-09 Score=108.44 Aligned_cols=97 Identities=25% Similarity=0.326 Sum_probs=79.0
Q ss_pred cEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCC
Q 000202 1400 LTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGT 1479 (1866)
Q Consensus 1400 ~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~ 1479 (1866)
|+|+|++| .+..++. ++.+++|++|++++|.++.+|+.++.+++|++|++++|.+ ..+| .++++++|++|++++|
T Consensus 1 R~L~Ls~n-~l~~l~~--l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i-~~l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL-ENVD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTS-CCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC-CCCG-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCC-CCCCCcc--cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccc-cccC-ccccccccCeEECCCC
Confidence 57888887 5666664 4778899999999999999988889999999999999885 4555 5888999999999999
Q ss_pred CCCcCCh--hhcCCCccceecccc
Q 000202 1480 EIKMLPK--EIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1480 ~i~~lp~--~i~~L~~L~~L~l~~ 1501 (1866)
.|+.+|. .++++++|++|++.+
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~ 99 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQG 99 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTT
T ss_pred ccCCCCCchhhcCCCCCCEEECCC
Confidence 8887763 578888888888754
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=98.98 E-value=2.6e-09 Score=119.00 Aligned_cols=176 Identities=19% Similarity=0.229 Sum_probs=138.5
Q ss_pred cCCCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhh
Q 000202 1362 RAGLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETL 1441 (1866)
Q Consensus 1362 ~~~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i 1441 (1866)
++.+...+.+..+++|+.+++++|.+..++.+..+++|+.+++++| .+..++. +..+++|++|+++++....++ .+
T Consensus 50 ~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n-~~~~i~~--l~~l~~L~~l~l~~~~~~~~~-~~ 125 (227)
T d1h6ua2 50 GTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGN-PLKNVSA--IAGLQSIKTLDLTSTQITDVT-PL 125 (227)
T ss_dssp TSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSC-CCSCCGG--GTTCTTCCEEECTTSCCCCCG-GG
T ss_pred CCCCCcchhHhcCCCCcEeecCCceeeccccccccccccccccccc-ccccccc--ccccccccccccccccccccc-hh
Confidence 3445555667889999999999999999888899999999999987 4556653 477999999999999887654 36
Q ss_pred cCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChh
Q 000202 1442 VNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSD 1521 (1866)
Q Consensus 1442 ~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~ 1521 (1866)
.....++.+.+++|.+... ..+.+.++|++|++++|.+...+ .++++++|+.|+++++. +.. ++
T Consensus 126 ~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~-l~~-----l~------- 189 (227)
T d1h6ua2 126 AGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNK-ISD-----IS------- 189 (227)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCC-----CG-------
T ss_pred ccccchhhhhchhhhhchh--hhhccccccccccccccccccch-hhcccccceecccCCCc-cCC-----Ch-------
Confidence 6788999999998875443 34778899999999999988765 48999999999997642 221 11
Q ss_pred hhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEee
Q 000202 1522 ILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFH 1566 (1866)
Q Consensus 1522 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 1566 (1866)
.++++++|+.|+++.+... .+ ..++.+++|+.|+++
T Consensus 190 ~l~~l~~L~~L~Ls~N~lt--------~i-~~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 190 PLASLPNLIEVHLKNNQIS--------DV-SPLANTSNLFIVTLT 225 (227)
T ss_dssp GGGGCTTCCEEECTTSCCC--------BC-GGGTTCTTCCEEEEE
T ss_pred hhcCCCCCCEEECcCCcCC--------CC-cccccCCCCCEEEee
Confidence 2678999999999865322 22 358899999999986
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1.4e-10 Score=134.01 Aligned_cols=142 Identities=16% Similarity=0.176 Sum_probs=88.8
Q ss_pred ccccCCcEEEecccCCccEeccCCCcccccccccccccccccc-cccccccccccccccccccEEeEecCccCccccchh
Q 000202 1659 GYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLW-DLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCS 1737 (1866)
Q Consensus 1659 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~-~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~ 1737 (1866)
..+++|++|+|++|..+....... ......++|+.|.+.+|. +++..-...+ ...+|+|++|++++|+.++.... .
T Consensus 118 ~~~~~L~~L~ls~c~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~i~~~~l~~l-~~~~~~L~~L~L~~~~~itd~~~-~ 194 (284)
T d2astb2 118 SSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLDLSDSVMLKNDCF-Q 194 (284)
T ss_dssp HHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEEECTTCTTCCGGGG-G
T ss_pred HHHHhccccccccccccccccchh-hhcccccccchhhhccccccccccccccc-ccccccccccccccccCCCchhh-h
Confidence 346889999999998775432110 012235789999998763 3332111011 12478999999999988876433 4
Q ss_pred hhhhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCccccccc--cCCCCCccEEEEEcCccccccC
Q 000202 1738 MIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIW--RNDWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1738 ~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~--~~~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
.+..+++|++|++++|..+..-. ...+..+|+|+.|++++|-.-..+. ...+|.|+ + +|..+....
T Consensus 195 ~l~~~~~L~~L~L~~C~~i~~~~------l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i-~~~~ls~~~ 262 (284)
T d2astb2 195 EFFQLNYLQHLSLSRCYDIIPET------LLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---I-NCSHFTTIA 262 (284)
T ss_dssp GGGGCTTCCEEECTTCTTCCGGG------GGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---E-SCCCSCCTT
T ss_pred hhcccCcCCEEECCCCCCCChHH------HHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---c-cCccCCCCC
Confidence 56678899999999998774321 1124467899999998883222221 12466665 3 677776553
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=9.6e-09 Score=115.57 Aligned_cols=117 Identities=22% Similarity=0.389 Sum_probs=82.5
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-C-hhhcCCCCCcEEecccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-P-ETLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p-~~i~~L~~L~~L~L~~~ 1455 (1866)
+.++.+++.+..+|... .++++.|++++| .+..+|...|.++++|++|+|++|.+... | ..+..++++++|.+..+
T Consensus 11 ~~i~c~~~~l~~iP~~l-~~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~ 88 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSDL-PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88 (242)
T ss_dssp SEEEEESCSCSSCCSCS-CSCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred CEEEEeCCCCCCcCCCC-CCCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence 46777777788887422 257888888877 57788887778888888888888887643 3 45778888888887654
Q ss_pred -cCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCcccee
Q 000202 1456 -DFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL 1497 (1866)
Q Consensus 1456 -~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L 1497 (1866)
......|..+.++++|++|++++|.+...|. ...+.+++.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~-~~~~~~l~~l 130 (242)
T d1xwdc1 89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKV 130 (242)
T ss_dssp TTCCEECTTSEECCTTCCEEEEESCCCCSCCC-CTTTCBSSCE
T ss_pred ccccccccccccccccccccccchhhhccccc-cccccccccc
Confidence 4445555667888888888888888776543 3334444444
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.85 E-value=2.5e-09 Score=123.53 Aligned_cols=200 Identities=16% Similarity=0.156 Sum_probs=110.7
Q ss_pred cccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccc--cHHH
Q 000202 180 TFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETG--RLDD 257 (1866)
Q Consensus 180 ~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~--~~~~ 257 (1866)
.|....+.||||+.+++++.+.. .+.|.|+|++|+|||+|+++++++....+ .|+.. ....... ....
T Consensus 6 ~p~~~~~~f~GR~~el~~l~~~~------~~~i~i~G~~G~GKTsLl~~~~~~~~~~~---~~i~~-~~~~~~~~~~~~~ 75 (283)
T d2fnaa2 6 SPKDNRKDFFDREKEIEKLKGLR------APITLVLGLRRTGKSSIIKIGINELNLPY---IYLDL-RKFEERNYISYKD 75 (283)
T ss_dssp SCCCSGGGSCCCHHHHHHHHHTC------SSEEEEEESTTSSHHHHHHHHHHHHTCCE---EEEEG-GGGTTCSCCCHHH
T ss_pred CCCCChhhCCChHHHHHHHHhcc------CCEEEEEcCCCCcHHHHHHHHHHHCCCCe---EEEEe-ccccccccccHHH
Confidence 34445689999999999988642 35789999999999999999988765433 23332 2211111 1233
Q ss_pred HHHHHHHHHhccc-----------------------c--ccCccch-hHHHHHHH--hhcCcEEEEEecCCCHH------
Q 000202 258 LRKELLSKLLNDR-----------------------N--VKNFQNI-SVNFQSKR--LARKKVLIVFDDVNHPR------ 303 (1866)
Q Consensus 258 l~~~ll~~~~~~~-----------------------~--~~~~~~~-~~~~l~~~--L~~k~~LlVlDdv~~~~------ 303 (1866)
+...+........ . ....... ..+.+... ..++++++|+|++....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~id~~~~~~~~~~~~ 155 (283)
T d2fnaa2 76 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN 155 (283)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHHhhcccccccccchhhhhcccchHH
Confidence 3333322211000 0 0000000 01222222 35789999999875311
Q ss_pred HHHHHhhccCCCCCCCEEEEEccccchh----ccC--------ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHH
Q 000202 304 QIELLIGRLDRFASGSQVIITTRDKQVL----TNC--------EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTEL 371 (1866)
Q Consensus 304 ~~~~l~~~~~~~~~gs~IiiTTR~~~v~----~~~--------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~ 371 (1866)
.+..+...... ......+++++..... ... .....+.|++++.+|+.+++.+..-......+ .
T Consensus 156 ~~~~l~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l~~~~~~~~~~~~----~ 230 (283)
T d2fnaa2 156 LLPALAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK----D 230 (283)
T ss_dssp CHHHHHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC----C
T ss_pred HHHHHHHHHHh-hhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHHHHhhhhhcCCCHH----H
Confidence 11122111111 2344555555443221 111 12356889999999999999765421111111 1
Q ss_pred HHHHHHHhCCCcceeeeeccccc
Q 000202 372 AHKALKYAQGVPLALKVLGCYLC 394 (1866)
Q Consensus 372 ~~~i~~~~~GlPLAl~~~g~~L~ 394 (1866)
..+|++.++|+|.+|..+|..+.
T Consensus 231 ~~~i~~~~~G~P~~L~~~~~~~~ 253 (283)
T d2fnaa2 231 YEVVYEKIGGIPGWLTYFGFIYL 253 (283)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Confidence 56899999999999998876553
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.83 E-value=4.7e-09 Score=113.27 Aligned_cols=110 Identities=27% Similarity=0.378 Sum_probs=95.5
Q ss_pred ccCcEEEccCCCCCC-CC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEE
Q 000202 1375 THAKMIFFMDNDLQT-LP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQIL 1450 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~-l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L 1450 (1866)
.+++.|++++|.+.. ++ .+..+++|+.|+|++| .+..++...+..+++|++|+|++|+|..+|+ .|.++++|++|
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L 107 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCCEEEeCCCCCcccccccccCCCceEeeeecccc-ccccccccccccccccceeeeccccccccCHHHHhCCCccccc
Confidence 578999999999975 43 3567999999999988 5667777777899999999999999999874 68999999999
Q ss_pred ecccccCcccCCccccCCCCCcEEEccCCCCCcCC
Q 000202 1451 ILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLP 1485 (1866)
Q Consensus 1451 ~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp 1485 (1866)
+|++|.+....|..+..+++|++|+|++|.+...+
T Consensus 108 ~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~ 142 (192)
T d1w8aa_ 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred ccCCccccccCHHHhcCCccccccccccccccccc
Confidence 99999987777778999999999999999887544
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=2.1e-08 Score=112.60 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=20.8
Q ss_pred ccEEeEecCccCccccchhhhhhccccceeeeccccccceec
Q 000202 1719 LRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSII 1760 (1866)
Q Consensus 1719 L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~ 1760 (1866)
++++....+.+|+.+++ ..+.++++|++|+|+++. ++.++
T Consensus 178 l~~~~~l~~n~l~~l~~-~~f~~l~~L~~L~Ls~N~-l~~l~ 217 (242)
T d1xwdc1 178 LDELNLSDNNNLEELPN-DVFHGASGPVILDISRTR-IHSLP 217 (242)
T ss_dssp EEEEECTTCTTCCCCCT-TTTTTSCCCSEEECTTSC-CCCCC
T ss_pred hhccccccccccccccH-HHhcCCCCCCEEECCCCc-CCccC
Confidence 33333334445555533 335566677777776653 55554
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.66 E-value=3.2e-10 Score=122.85 Aligned_cols=102 Identities=21% Similarity=0.220 Sum_probs=52.0
Q ss_pred CCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEE
Q 000202 1395 SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVL 1474 (1866)
Q Consensus 1395 ~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L 1474 (1866)
.+++|+.|+|++| .+..++. +..+++|++|+|++|.|+.+|.....+.+|++|++++|.+. .+ +.+.++++|++|
T Consensus 46 ~L~~L~~L~Ls~n-~I~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~-~l-~~~~~l~~L~~L 120 (198)
T d1m9la_ 46 TLKACKHLALSTN-NIEKISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVL 120 (198)
T ss_dssp HTTTCCEEECSEE-EESCCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECC-CH-HHHHHHHHSSEE
T ss_pred cccccceeECccc-CCCCccc--ccCCccccChhhccccccccccccccccccccccccccccc-cc-cccccccccccc
Confidence 3445555555544 3444432 24455555555555555555544444455555555555432 22 234555555555
Q ss_pred EccCCCCCcCCh--hhcCCCccceecccc
Q 000202 1475 DLRGTEIKMLPK--EIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1475 ~l~~~~i~~lp~--~i~~L~~L~~L~l~~ 1501 (1866)
++++|.|+.++. .+..+++|++|++.+
T Consensus 121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~ 149 (198)
T d1m9la_ 121 YMSNNKITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred ccccchhccccccccccCCCccceeecCC
Confidence 555555555542 355555555555543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=8e-08 Score=99.04 Aligned_cols=104 Identities=15% Similarity=0.110 Sum_probs=80.7
Q ss_pred cEEEccCCCCCCCC-CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEecccc
Q 000202 1378 KMIFFMDNDLQTLP-GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~-~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~ 1455 (1866)
..+...++.+...| .+..+++|+.|++++|..+..++...|..+++|+.|+|++|+|+.++ ..+..+++|++|+|++|
T Consensus 11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N 90 (156)
T d2ifga3 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (156)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence 34666677766665 45677888899988776788888887788889999999999988875 56888888999999888
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCC
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIK 1482 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~ 1482 (1866)
.+ ..+|..+-...+|++|+|++|.+.
T Consensus 91 ~l-~~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 91 AL-ESLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp CC-SCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CC-cccChhhhccccccccccCCCccc
Confidence 84 466666555557888888888764
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.55 E-value=2.3e-09 Score=115.95 Aligned_cols=112 Identities=24% Similarity=0.216 Sum_probs=64.0
Q ss_pred ccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCC
Q 000202 1412 VIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKL 1491 (1866)
Q Consensus 1412 ~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L 1491 (1866)
.+|.++ +.+++|++|+|++|.|+.++ .+..|++|++|+|++|. +..+|.....+.+|++|++++|.++.++ .+.++
T Consensus 39 ~l~~sl-~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l 114 (198)
T d1m9la_ 39 KMDATL-STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIEKL 114 (198)
T ss_dssp CCHHHH-HHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHH
T ss_pred hhhhHH-hcccccceeECcccCCCCcc-cccCCccccChhhcccc-cccccccccccccccccccccccccccc-ccccc
Confidence 334443 55666777777777666664 46666677777777665 3455554444556677777777666653 36666
Q ss_pred CccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccC
Q 000202 1492 TSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVH 1537 (1866)
Q Consensus 1492 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~ 1537 (1866)
++|++|+++++.- .... ....+..+++|+.|+++.+
T Consensus 115 ~~L~~L~L~~N~i-~~~~---------~~~~l~~l~~L~~L~L~~N 150 (198)
T d1m9la_ 115 VNLRVLYMSNNKI-TNWG---------EIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHSSEEEESEEEC-CCHH---------HHHHHTTTTTCSEEEECSS
T ss_pred ccccccccccchh-cccc---------ccccccCCCccceeecCCC
Confidence 6666666654210 0000 0123556666666666654
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.40 E-value=2.3e-07 Score=106.52 Aligned_cols=190 Identities=16% Similarity=0.210 Sum_probs=108.8
Q ss_pred cccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecC-----CCCHHHHHHHHHH
Q 000202 978 TAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSR-----YWNTRKIQKQVLR 1052 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~ 1052 (1866)
..|.||+++++++.+. ..+.|.|+|++|+|||+|++++.+. ... ...|+.+.. ......+...+..
T Consensus 12 ~~f~GR~~el~~l~~~----~~~~i~i~G~~G~GKTsLl~~~~~~--~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~ 82 (283)
T d2fnaa2 12 KDFFDREKEIEKLKGL----RAPITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLLELQK 82 (283)
T ss_dssp GGSCCCHHHHHHHHHT----CSSEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHHHHHH
T ss_pred hhCCChHHHHHHHHhc----cCCEEEEEcCCCCcHHHHHHHHHHH--CCC---CeEEEEeccccccccccHHHHHHHHHH
Confidence 4578999999988764 3468999999999999999998542 222 234554322 2234444444443
Q ss_pred HhccC-----------------------------CCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCccc------hhhhc
Q 000202 1053 QLSLH-----------------------------CKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQID------LEAVG 1097 (1866)
Q Consensus 1053 ~l~~~-----------------------------~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~------~~~l~ 1097 (1866)
..... ........+..+.+ ....++++++|+|++..... +..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~~~i~id~~~~~~~~~~~~~~~~l~ 161 (283)
T d2fnaa2 83 EINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESF-EQASKDNVIIVLDEAQELVKLRGVNLLPALA 161 (283)
T ss_dssp HHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHH-HHTCSSCEEEEEETGGGGGGCTTCCCHHHHH
T ss_pred HhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHH-HhhcccccccccchhhhhcccchHHHHHHHH
Confidence 32100 00111222232222 23457899999998854211 11111
Q ss_pred CCCCCCCCCcEEEEccCChhhhc----cC--------CCCcEEEecCCChHHHHHHHHHHhcCCC-CCchHHHHHHHHHH
Q 000202 1098 IPVPGSENGSKIFMASRELDVCR----NM--------DVNMVVKLETLSMKDAWELFCKEVGGII-QSPDIHLYARAIVK 1164 (1866)
Q Consensus 1098 ~~l~~~~~gs~IivTTR~~~v~~----~~--------~~~~~~~l~~L~~~~a~~Lf~~~~~~~~-~~~~~~~~~~~I~~ 1164 (1866)
... ........+++++...... .. .....+.|.+++.+++.+++.+.+.... ..++ ..+|.+
T Consensus 162 ~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~ 236 (283)
T d2fnaa2 162 YAY-DNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVYE 236 (283)
T ss_dssp HHH-HHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHH
T ss_pred HHH-HhhhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHHHHhhhhhcCCCHHH----HHHHHH
Confidence 111 1123344555554433211 11 1135688999999999999987653211 1222 457999
Q ss_pred HcCCChHHHHHHHHHhhC
Q 000202 1165 GCCGLPLLTIVTAKALAG 1182 (1866)
Q Consensus 1165 ~c~GlPLAi~~~g~~L~~ 1182 (1866)
.++|.|..+..+|..+..
T Consensus 237 ~~~G~P~~L~~~~~~~~~ 254 (283)
T d2fnaa2 237 KIGGIPGWLTYFGFIYLD 254 (283)
T ss_dssp HHCSCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHh
Confidence 999999999999877654
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=4e-07 Score=93.60 Aligned_cols=105 Identities=18% Similarity=0.077 Sum_probs=82.3
Q ss_pred CCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCC-CCCCCC-hhhcCCCCCcEEecccccCcccCCccccCCCCCc
Q 000202 1395 SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKT-RIKSLP-ETLVNLKCLQILILRDCDFLFVLPPEVGSLECLE 1472 (1866)
Q Consensus 1395 ~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~-~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~ 1472 (1866)
.|.....+.++++ .+...|..+ ..+++|+.|+++++ .++.++ ..|.++++|+.|+|++|.+...-|..|..+++|+
T Consensus 6 ~c~~~~~l~c~~~-~~~~~p~~l-~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~ 83 (156)
T d2ifga3 6 CPHGSSGLRCTRD-GALDSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (156)
T ss_dssp CCSSSSCEECCSS-CCCTTTTTS-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred CcCCCCeEEecCC-CCccCcccc-cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccc
Confidence 4455666777765 455566655 56889999999766 488887 5688999999999999987666677889999999
Q ss_pred EEEccCCCCCcCChhhcCCCccceecccc
Q 000202 1473 VLDLRGTEIKMLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1473 ~L~l~~~~i~~lp~~i~~L~~L~~L~l~~ 1501 (1866)
+|+|++|.|+.+|.++....+|++|++.+
T Consensus 84 ~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~ 112 (156)
T d2ifga3 84 RLNLSFNALESLSWKTVQGLSLQELVLSG 112 (156)
T ss_dssp EEECCSSCCSCCCSTTTCSCCCCEEECCS
T ss_pred ceeccCCCCcccChhhhccccccccccCC
Confidence 99999999999988766666788887753
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.34 E-value=1.3e-06 Score=96.35 Aligned_cols=179 Identities=12% Similarity=0.184 Sum_probs=108.6
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc-ccceEEEEeeccccccccHHHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
|....++||.+..++.|..++..+. ...+.++|++|+||||+|+.+++.+... +...+...+... ... .....
T Consensus 10 P~~~~divg~~~~~~~L~~~i~~~~--~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~---~~~-~~~~~ 83 (227)
T d1sxjc2 10 PETLDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD---DRG-IDVVR 83 (227)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS---CCS-HHHHH
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC--CCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccc---cCC-eeeee
Confidence 3455789999999999999998654 2236799999999999999999976432 222222221111 111 11111
Q ss_pred HHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccch-hcc-Ccc
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQV-LTN-CEV 336 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~~-~~~ 336 (1866)
........... ...+++-++|+|+++. ...-..++..+......++++++|.+..- ... ...
T Consensus 84 ~~~~~~~~~~~--------------~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~sr 149 (227)
T d1sxjc2 84 NQIKDFASTRQ--------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ 149 (227)
T ss_dssp THHHHHHHBCC--------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred cchhhcccccc--------------ccCCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHHHhHHHHHHH
Confidence 11111111100 1123455888999974 34555565555555678888888876432 211 123
Q ss_pred ceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 337 DHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 337 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
...+++.+++.++-...+.+.+...... -..+....|++.++|-
T Consensus 150 ~~~i~~~~~~~~~i~~~l~~I~~~e~i~--i~~~~l~~i~~~s~Gd 193 (227)
T d1sxjc2 150 CTRFRFQPLPQEAIERRIANVLVHEKLK--LSPNAEKALIELSNGD 193 (227)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCC--BCHHHHHHHHHHHTTC
T ss_pred Hhhhcccccccccccccccccccccccc--CCHHHHHHHHHHcCCc
Confidence 4678999999999988888766332211 1245578899999884
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=1e-07 Score=118.00 Aligned_cols=107 Identities=18% Similarity=0.145 Sum_probs=74.0
Q ss_pred cCcEEEccCCCCCCCC---CCCCCCcccEEEccCCcCCcccC----hhHHhcCCCCcEEEccCCCCCC-----CChhhcC
Q 000202 1376 HAKMIFFMDNDLQTLP---GRPSCPNLLTLFLQRNCRLRVIP----PSFFELMTSLKVLNLSKTRIKS-----LPETLVN 1443 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~---~~~~~~~L~~L~L~~~~~l~~~p----~~~~~~l~~L~~L~Ls~~~i~~-----lp~~i~~ 1443 (1866)
+|+.|++++|.+.... -+..++++++|+|++|. +.... ...+..+++|++|||++|.|+. +...+..
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 5788899999887421 13467888999998773 43211 1224678899999999998752 2222322
Q ss_pred -CCCCcEEecccccCccc----CCccccCCCCCcEEEccCCCCCc
Q 000202 1444 -LKCLQILILRDCDFLFV----LPPEVGSLECLEVLDLRGTEIKM 1483 (1866)
Q Consensus 1444 -L~~L~~L~L~~~~~~~~----lP~~i~~L~~L~~L~l~~~~i~~ 1483 (1866)
..+|++|+|++|.+... ++..+..+++|++|++++|.+..
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 126 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 126 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred CCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence 34799999999985432 45667788899999999988763
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.28 E-value=1.4e-06 Score=96.02 Aligned_cols=181 Identities=14% Similarity=0.211 Sum_probs=108.5
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc-cceEEEEeeccccccccHHHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF-EGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
|....++||-+..++.|..++..+. ..-+.++|++|+||||+|+.+++.+...+ ...++..+... ......+..
T Consensus 11 P~~~~d~ig~~~~~~~L~~~~~~~~--~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~---~~~~~~i~~ 85 (224)
T d1sxjb2 11 PQVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD---DRGIDVVRN 85 (224)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS---CCSHHHHHT
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcCC--CCeEEEECCCCCCchhhHHHHHHHHhccccccccccccccc---cCCceehhh
Confidence 4455789999999999999998653 33367999999999999999999765543 22223222221 111111111
Q ss_pred HHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccc-hhccC-cc
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQ-VLTNC-EV 336 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~ 336 (1866)
.+ ........ . ....+.-++|+|+++. ......++..+......+++++||.+.. +.... ..
T Consensus 86 ~~-~~~~~~~~--~-----------~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr 151 (224)
T d1sxjb2 86 QI-KHFAQKKL--H-----------LPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 151 (224)
T ss_dssp HH-HHHHHBCC--C-----------CCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HH-HHHHHhhc--c-----------CCCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhhhHHHHH
Confidence 11 11111110 0 0123556888999974 3344444444444455677777766543 22111 23
Q ss_pred ceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 337 DHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 337 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
...+++++++.++-...+.+.+..... .-..+....|++.++|-+
T Consensus 152 ~~~i~~~~~~~~~i~~~l~~i~~~e~~--~i~~~~l~~I~~~s~Gd~ 196 (224)
T d1sxjb2 152 CAILRYSKLSDEDVLKRLLQIIKLEDV--KYTNDGLEAIIFTAEGDM 196 (224)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHHTTCH
T ss_pred HHHhhhcccchhhhHHHHHHHHHhccc--CCCHHHHHHHHHHcCCcH
Confidence 467899999999999888876632211 112356788999998865
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=98.26 E-value=2.5e-06 Score=94.74 Aligned_cols=189 Identities=16% Similarity=0.134 Sum_probs=108.9
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....+++|.+..++.+..++..+. -.+.+.|+|.+|+||||+|+.+++.+....... .. . .........+
T Consensus 9 ~~~~dlig~~~~~~~L~~~i~~~~-~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~-----~~---~-~~~~~~~~~i 78 (239)
T d1njfa_ 9 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-----AT---P-CGVCDNCREI 78 (239)
T ss_dssp SSGGGSCSCHHHHHHHHHHHHTTC-CCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSC-----SS---C-CSCSHHHHHH
T ss_pred CCHHHccChHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCccccc-----cC---c-cccchHHHHH
Confidence 445689999999999999998643 245678999999999999999998654332100 00 0 0000000011
Q ss_pred HHHHhcc-ccccCccchhHHHHHHHh--------hcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccchh
Q 000202 263 LSKLLND-RNVKNFQNISVNFQSKRL--------ARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQVL 331 (1866)
Q Consensus 263 l~~~~~~-~~~~~~~~~~~~~l~~~L--------~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~ 331 (1866)
...-... ...........+.+++.+ .++.-++|||+++. .+....|+..+......+++|+||.+.+-.
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 79 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp HHTCCTTEEEEETTCSSSHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred HcCCCCeEEEecchhcCCHHHHHHHHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence 1000000 000000001112222221 23556889999984 455566766666666778888887765332
Q ss_pred -ccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 332 -TNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 332 -~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
... .....+.+.+++.++-.+.+...+-.... .-.++....|++.++|.+
T Consensus 159 ~~~i~SRc~~i~~~~~~~~~i~~~l~~i~~~e~~--~~~~~~l~~i~~~s~Gd~ 210 (239)
T d1njfa_ 159 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSL 210 (239)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHTTTCH
T ss_pred ChhHhhhhcccccccCcHHHhhhHHHHHHhhhcc--CCCHHHHHHHHHHcCCCH
Confidence 111 23467899999999988877765532111 112355778888888866
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.26 E-value=1.6e-06 Score=95.95 Aligned_cols=179 Identities=18% Similarity=0.232 Sum_probs=106.6
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc-ccceEEEEeeccccccccHHHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
|....++||-+..++.|..++..+. ...+.++|.+|+||||+|+.+++.+... +....+-.+... ... .....
T Consensus 20 P~~~~diig~~~~~~~l~~~i~~~~--~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s~---~~~-~~~~~ 93 (231)
T d1iqpa2 20 PQRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD---ERG-INVIR 93 (231)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC---HHH-HHTTH
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC--CCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEecCc---ccc-hhHHH
Confidence 4456789999999999999998653 3457899999999999999999976543 222222222111 000 01111
Q ss_pred HHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcccc-chhccC-cc
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDK-QVLTNC-EV 336 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~ 336 (1866)
.......... .....++.++++|+++. ......++..+........+|.||... .+.... ..
T Consensus 94 ~~~~~~~~~~--------------~~~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR 159 (231)
T d1iqpa2 94 EKVKEFARTK--------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 159 (231)
T ss_dssp HHHHHHHHSC--------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred HHHHHHHhhh--------------hccCCCceEEeehhhhhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCc
Confidence 1111111000 01134677889999863 444455554444334455666666543 232221 23
Q ss_pred ceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 337 DHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 337 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
...+.+.+.+.++....+.+.+..... .-..+..+.|++.++|-
T Consensus 160 ~~~i~~~~~~~~~~~~~l~~~~~~e~i--~i~~~~l~~I~~~~~gd 203 (231)
T d1iqpa2 160 CAIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGD 203 (231)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTC
T ss_pred cccccccccchhhHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCC
Confidence 467899999999998888877643321 12245578888988874
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.23 E-value=2e-06 Score=95.61 Aligned_cols=189 Identities=10% Similarity=0.107 Sum_probs=108.8
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc--cceEEEEeeccccccccHHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF--EGSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
|....+++|.+..++.|..++.... ...+.++|.+|+||||+|+.+++++.... ....+..+... ...... .
T Consensus 8 P~~~~diig~~~~~~~l~~~i~~~~--~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~---~~~~~~-~ 81 (237)
T d1sxjd2 8 PKNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD---ERGISI-V 81 (237)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS---CCCHHH-H
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC--CCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccc---cccchH-H
Confidence 4456789999999999999998543 33478999999999999999999764322 11122222211 111111 1
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcccc-chhccC-c
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDK-QVLTNC-E 335 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~ 335 (1866)
............ .......+......+.-++|+|+++. ......+...........++|+||.+. .+.... .
T Consensus 82 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l~s 157 (237)
T d1sxjd2 82 REKVKNFARLTV----SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 157 (237)
T ss_dssp TTHHHHHHHSCC----CCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHHhhhhh----hhhhHHHHhhccccCceEEEEecccccCHHHHHHHhhccccccccccccccccccccccccccc
Confidence 111112111111 11111223333344555789999974 334444444333344566777766543 222211 1
Q ss_pred cceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 336 VDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 336 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
....+++++++.++....+.+.+....... ..+..+.|++.++|-
T Consensus 158 r~~~i~f~~~~~~~~~~~L~~i~~~e~i~i--~~~~l~~ia~~s~gd 202 (237)
T d1sxjd2 158 QCSKFRFKALDASNAIDRLRFISEQENVKC--DDGVLERILDISAGD 202 (237)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHTSSC
T ss_pred hhhhhccccccccccchhhhhhhhhhcCcC--CHHHHHHHHHHcCCC
Confidence 236789999999999999987764433211 245677888888774
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=7.9e-08 Score=119.10 Aligned_cols=105 Identities=16% Similarity=0.138 Sum_probs=78.3
Q ss_pred CcccEEEccCCcCCcccC-hhHHhcCCCCcEEEccCCCCC-----CCChhhcCCCCCcEEecccccCcc----cCCcccc
Q 000202 1397 PNLLTLFLQRNCRLRVIP-PSFFELMTSLKVLNLSKTRIK-----SLPETLVNLKCLQILILRDCDFLF----VLPPEVG 1466 (1866)
Q Consensus 1397 ~~L~~L~L~~~~~l~~~p-~~~~~~l~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~----~lP~~i~ 1466 (1866)
.+|+.|+++++. +.... ..++..+++|++|+|++|.++ .++..+..+++|++|+|++|.+.. .+...+.
T Consensus 2 ~~l~~ld~~~~~-i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~ 80 (460)
T d1z7xw1 2 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 80 (460)
T ss_dssp EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CCCCEEEeeCCc-CChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence 368999998774 43322 345577899999999999987 445677899999999999997532 1222222
Q ss_pred -CCCCCcEEEccCCCCCc-----CChhhcCCCccceeccccc
Q 000202 1467 -SLECLEVLDLRGTEIKM-----LPKEIGKLTSLRYLTVFFF 1502 (1866)
Q Consensus 1467 -~L~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~ 1502 (1866)
...+|++|++++|.++. ++..+..+++|++|+++++
T Consensus 81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N 122 (460)
T d1z7xw1 81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122 (460)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred cCCCCCCEEECCCCCccccccccccchhhccccccccccccc
Confidence 23579999999999873 4566888999999998753
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.19 E-value=2.3e-06 Score=96.16 Aligned_cols=194 Identities=11% Similarity=0.131 Sum_probs=101.5
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc------ccceEEEEeecc-------
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH------FEGSYFACNVRA------- 248 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~~~~~------- 248 (1866)
|...++++|.+...+.|..++.... ...-+.|+|++|+||||+|+++++.+... .+...+......
T Consensus 7 P~~~~diig~~~~~~~L~~~~~~~~-~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (252)
T d1sxje2 7 PKSLNALSHNEELTNFLKSLSDQPR-DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 85 (252)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTT-CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccccccccccccchhhhhhc
Confidence 3445689999999999998887543 23346799999999999999999864221 111111100000
Q ss_pred ----------ccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCC
Q 000202 249 ----------AEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFA 316 (1866)
Q Consensus 249 ----------~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~ 316 (1866)
....................... .....-......+.-++|||+++. .+....+...+....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~iiiide~d~l~~~~~~~l~~~~e~~~ 159 (252)
T d1sxje2 86 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ------VDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYS 159 (252)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred cCCccceeeecccccCCcceeeehhhhhhhhhh------hhhhhcccccCCCceEEEeccccccccccchhhhccccccc
Confidence 00000001111111111111110 000001111234456889999985 444555555444456
Q ss_pred CCCEEEEEccccchh-cc-CccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 317 SGSQVIITTRDKQVL-TN-CEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 317 ~gs~IiiTTR~~~v~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
..+++|+||.+.+-. .. ......+++.+++.++..+.+...+-.... .-..++..+.|++.+.|.+
T Consensus 160 ~~~~~Il~tn~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~e~~-~~~~~~~l~~i~~~s~Gd~ 227 (252)
T d1sxje2 160 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-QLETKDILKRIAQASNGNL 227 (252)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-EECCSHHHHHHHHHHTTCH
T ss_pred ccccceeeeccccchhhhhhcchheeeecccchhhHHHHHHHHHHHcCC-CCCcHHHHHHHHHHcCCcH
Confidence 678888887665322 11 012357889999999999988755421111 0111245677888888864
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=98.17 E-value=6.4e-06 Score=90.99 Aligned_cols=154 Identities=14% Similarity=0.142 Sum_probs=94.5
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc------ccceEEEEeeccccccccHHHHH
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH------FEGSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
+..+||+.+++++...|..... .-+.++|.+|+|||+|+..+++++... ....+|..+....-.
T Consensus 18 d~~igRd~Ei~~l~~iL~r~~k--~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~lia-------- 87 (268)
T d1r6bx2 18 DPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA-------- 87 (268)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSS--CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C--------
T ss_pred CcccChHHHHHHHHHHHhcCcc--CCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhc--------
Confidence 4689999999999999975432 346799999999999999999976442 234555543332111
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------HHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------RQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
+.......+......+...-+.+++++++|++... .++..++.+... ...-++|.||..+.
T Consensus 88 --------g~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~-rg~i~vIgatT~ee 158 (268)
T d1r6bx2 88 --------GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQE 158 (268)
T ss_dssp --------CCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHH
T ss_pred --------cCccchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHh-CCCCeEEEeCCHHH
Confidence 00000011111112222223557799999998542 234444433222 23468888887765
Q ss_pred hhccC-------ccceeeecCCCCHHHHHHHHHhhc
Q 000202 330 VLTNC-------EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 330 v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
..... ...+.+.|++++.+++.+.+...+
T Consensus 159 y~~~~e~d~al~rrF~~I~V~Eps~e~t~~IL~~~~ 194 (268)
T d1r6bx2 159 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 194 (268)
T ss_dssp HHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHhhcHHHHhhhcccccCCCCHHHHHHHHHHhh
Confidence 54332 124688999999999999987543
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.14 E-value=8.3e-06 Score=92.65 Aligned_cols=172 Identities=15% Similarity=0.146 Sum_probs=97.0
Q ss_pred cCCCceeehhhHHHHHHhhhc----CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRT----GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~----~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
.+..++||+.+++++.++|.. .+...+.+.|+|++|+||||+|+.+++.+.......+...... .........
T Consensus 14 ~p~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~~ 90 (276)
T d1fnna2 14 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF---IYRNFTAII 90 (276)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT---TCCSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecch---hhhhhhhhh
Confidence 345699999999999998863 2334567999999999999999999998876554433332222 222234445
Q ss_pred HHHHHHHhccccccCccchh-HHHHHHHh--hcCcEEEEEecCCCHH-----HHHHHhhccCCC-CCCCEEEEEccccch
Q 000202 260 KELLSKLLNDRNVKNFQNIS-VNFQSKRL--ARKKVLIVFDDVNHPR-----QIELLIGRLDRF-ASGSQVIITTRDKQV 330 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~-~~~l~~~L--~~k~~LlVlDdv~~~~-----~~~~l~~~~~~~-~~gs~IiiTTR~~~v 330 (1866)
.................... ...+.+.+ ......+++|++++.. ....+....... .....+|.++.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (276)
T d1fnna2 91 GEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 170 (276)
T ss_dssp HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred hhhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhhhhhHHHHHhccccccccceEEeecCCchhh
Confidence 55555443332211111111 12222322 3356777888876421 122222221111 223345555554433
Q ss_pred hccCc-------cceeeecCCCCHHHHHHHHHhhc
Q 000202 331 LTNCE-------VDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 331 ~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
..... ....+.+.+++.+|..+.+.+.+
T Consensus 171 ~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~ 205 (276)
T d1fnna2 171 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRA 205 (276)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHH
T ss_pred hhhcchhhhhhhcchhccccchhHHHHHHHHHHHH
Confidence 32221 12457899999999999987654
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=2.1e-05 Score=84.51 Aligned_cols=179 Identities=12% Similarity=0.116 Sum_probs=100.2
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccc
Q 000202 193 WRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNV 272 (1866)
Q Consensus 193 ~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~ 272 (1866)
...+++.+.+..+. -...+.++|.+|+||||+|+.+++.+-..-... ............+..............
T Consensus 9 ~~~~~l~~~~~~~~-l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~ 82 (207)
T d1a5ta2 9 PDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQG-----HKSCGHCRGCQLMQAGTHPDYYTLAPE 82 (207)
T ss_dssp HHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-----TBCCSCSHHHHHHHHTCCTTEEEECCC
T ss_pred HHHHHHHHHHHcCC-cCeEEEEECCCCCcHHHHHHHHHHhcccccccc-----cccccccchhhhhhhccccccchhhhh
Confidence 44566666666432 245688999999999999999998653211000 000000000000000000000000000
Q ss_pred cCccchhHHHH---HHHh-----hcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccccc-hhccC-ccceee
Q 000202 273 KNFQNISVNFQ---SKRL-----ARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDKQ-VLTNC-EVDHIY 340 (1866)
Q Consensus 273 ~~~~~~~~~~l---~~~L-----~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~ 340 (1866)
........+.+ .+.+ .+++-++|+|+++ +.+....++..+.....++++|+||++.+ +.... .....+
T Consensus 83 ~~~~~i~~~~ir~l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~~i 162 (207)
T d1a5ta2 83 KGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLH 162 (207)
T ss_dssp TTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred hcccccccchhhHHhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeEEE
Confidence 00001111112 2221 3456699999998 46667778777777778899888887764 33322 234688
Q ss_pred ecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 341 QMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 341 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
.+.+++.++....+....- . ..+.+..+++.++|.|-
T Consensus 163 ~~~~~~~~~~~~~L~~~~~----~---~~~~~~~i~~~s~Gs~r 199 (207)
T d1a5ta2 163 YLAPPPEQYAVTWLSREVT----M---SQDALLAALRLSAGSPG 199 (207)
T ss_dssp ECCCCCHHHHHHHHHHHCC----C---CHHHHHHHHHHTTTCHH
T ss_pred ecCCCCHHHHHHHHHHcCC----C---CHHHHHHHHHHcCCCHH
Confidence 9999999999998876541 1 13567788899998874
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=98.06 E-value=5.7e-06 Score=85.99 Aligned_cols=148 Identities=14% Similarity=0.127 Sum_probs=88.3
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc------ccceEEEEeeccccccccHHHHH
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH------FEGSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
+..|||+.+++++...|..... .-+.++|.+|+|||+++..+++++... -...+|..+....-.......
T Consensus 22 d~~igRd~Ei~~l~~iL~r~~k--~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG-- 97 (195)
T d1jbka_ 22 DPVIGRDEEIRRTIQVLQRRTK--NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRG-- 97 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSS--CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHH--
T ss_pred CCCcCcHHHHHHHHHHHhccCC--CCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCCccH--
Confidence 4689999999999999986432 246799999999999999999976532 234566554333111111000
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHhh-cCcEEEEEecCCCH----------HHHHHHhhccCCCCCCCEEEEEcccc
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRLA-RKKVLIVFDDVNHP----------RQIELLIGRLDRFASGSQVIITTRDK 328 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~IiiTTR~~ 328 (1866)
..+......+.+..+ ..+++|++|++... +.-+.+.+.+. ...-++|.||..+
T Consensus 98 --------------~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~--rg~l~~IgatT~e 161 (195)
T d1jbka_ 98 --------------EFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLD 161 (195)
T ss_dssp --------------HHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHH
T ss_pred --------------HHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHh--CCCceEEecCCHH
Confidence 001111122223223 35799999998531 11233334333 2345778777655
Q ss_pred chhccC-------ccceeeecCCCCHHHHHHH
Q 000202 329 QVLTNC-------EVDHIYQMKELVHADAHKL 353 (1866)
Q Consensus 329 ~v~~~~-------~~~~~~~l~~L~~~ea~~L 353 (1866)
...... ...+.+.|++++.+++.+.
T Consensus 162 ey~~~~e~d~aL~rrF~~I~V~Ep~~e~t~~I 193 (195)
T d1jbka_ 162 EYRQYIEKDAALERRFQKVFVAEPSVEDTIAI 193 (195)
T ss_dssp HHHHHTTTCHHHHTTEEEEECCCCCHHHHHTT
T ss_pred HHHHHHHcCHHHHhcCCEeecCCCCHHHHHHH
Confidence 433222 2246789999999988754
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=97.85 E-value=3.7e-05 Score=87.66 Aligned_cols=171 Identities=12% Similarity=0.147 Sum_probs=89.3
Q ss_pred cCCCceeehhhHHHHHHhhh----cCC--CC-cEEEEEEecCCCchhHHHHHHHHhhhcccc------ceEEEEeecccc
Q 000202 184 ESKDLIGVEWRIKEIESLLR----TGS--AG-VYKLGIWGIGGIGKTTIAGAVFNKISRHFE------GSYFACNVRAAE 250 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~----~~~--~~-~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~~~~~~~~~~ 250 (1866)
.++.++||+.++++|.+.+. .+. .+ ..++.|+|++|+|||++|+++++.+..... ...++. ..
T Consensus 14 ~P~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~----~~ 89 (287)
T d1w5sa2 14 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----AF 89 (287)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----GG
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeec----cc
Confidence 45689999999999988763 121 12 334567899999999999999997654321 122222 11
Q ss_pred ccccHHHHHHHHHHHHhccccccCccchh-HHHHHHHh--hcCcEEEEEecCCCH--------HHHHHH---hhccCC-C
Q 000202 251 ETGRLDDLRKELLSKLLNDRNVKNFQNIS-VNFQSKRL--ARKKVLIVFDDVNHP--------RQIELL---IGRLDR-F 315 (1866)
Q Consensus 251 ~~~~~~~l~~~ll~~~~~~~~~~~~~~~~-~~~l~~~L--~~k~~LlVlDdv~~~--------~~~~~l---~~~~~~-~ 315 (1866)
............................. ...+.+.. .+...++++|.++.. +....+ ...+.. .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~l~~~~ 169 (287)
T d1w5sa2 90 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD 169 (287)
T ss_dssp GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred cccchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccchhHHHHHHHHHHhcchhh
Confidence 22233444444444443332211111111 12232222 446678888877532 122222 111111 1
Q ss_pred --CCCCEEEEEccccchh--------ccCccceeeecCCCCHHHHHHHHHhhc
Q 000202 316 --ASGSQVIITTRDKQVL--------TNCEVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 316 --~~gs~IiiTTR~~~v~--------~~~~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
..-..|++++...... ........+.+++++.+|..+.+...+
T Consensus 170 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~ 222 (287)
T d1w5sa2 170 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRA 222 (287)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred cccceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhH
Confidence 1222333443322110 011124678899999999999998665
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=97.82 E-value=4.3e-05 Score=84.12 Aligned_cols=172 Identities=15% Similarity=0.189 Sum_probs=92.7
Q ss_pred CCCceeehhhHHHHHHhhh---c-------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 185 SKDLIGVEWRIKEIESLLR---T-------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~---~-------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
-.+++|.+...++|.+.+. . +....+-|.++|++|+|||+||+++++..... ++......
T Consensus 8 ~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~----~~~i~~~~------ 77 (247)
T d1ixza_ 8 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP----FITASGSD------ 77 (247)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCC----EEEEEHHH------
T ss_pred HHHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCC----EEEEEhHH------
Confidence 3568888887766655432 1 22335568999999999999999999876432 22221111
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccCCCCCC
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLDRFASG 318 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~~~g 318 (1866)
+.+...+. ............-+..+++|+|||++.. ..+..|+..+......
T Consensus 78 -------l~~~~~g~-----~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~ 145 (247)
T d1ixza_ 78 -------FVEMFVGV-----GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 145 (247)
T ss_dssp -------HHHSCTTH-----HHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred -------hhhccccH-----HHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCC
Confidence 11110000 0000011122223457889999998521 1233344333322222
Q ss_pred CE--EEEEccccchhcc-C----ccceeeecCCCCHHHHHHHHHhhcCCCCC-CChhHHHHHHHHHHHhCCC
Q 000202 319 SQ--VIITTRDKQVLTN-C----EVDHIYQMKELVHADAHKLFTQCAFRGDH-LDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 319 s~--IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~Gl 382 (1866)
.+ ||-||...+-+.. . .-+..++++..+.++..++|+.+..+... .... ...+++.+.|.
T Consensus 146 ~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~~~~~----~~~la~~t~g~ 213 (247)
T d1ixza_ 146 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGF 213 (247)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTC
T ss_pred CCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCccccC----HHHHHHHCCCC
Confidence 33 3336765443321 1 23568999999999999999877643221 1112 34455666664
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.78 E-value=7.5e-05 Score=83.13 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=97.0
Q ss_pred CCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 186 KDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
.+++|.+...++|.+.+.. +-...+-|.++|++|+|||++|+++++.....| +...........
T Consensus 4 ~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~----~~i~~~~l~~~~- 78 (258)
T d1e32a2 4 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKL- 78 (258)
T ss_dssp GGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEE----EEECHHHHTTSC-
T ss_pred hhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeE----EEEEchhhcccc-
Confidence 3578888888887775421 223356789999999999999999998754432 222111100000
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-------------HHHHHHhhccC--CCCCCC
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-------------RQIELLIGRLD--RFASGS 319 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~--~~~~gs 319 (1866)
.+ .............-..++++|++||++.. .....+..... ....+.
T Consensus 79 ------------~g-----~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~v 141 (258)
T d1e32a2 79 ------------AG-----ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 141 (258)
T ss_dssp ------------TT-----HHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCE
T ss_pred ------------cc-----cHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCc
Confidence 00 00000011222233568899999999741 01222222222 223344
Q ss_pred EEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 320 QVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 320 ~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
-||.||...+-+... ..+..++++..+.++-.++|..+.-+.. ...+. ....|++.+.|.
T Consensus 142 lvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~-~~~~~--~~~~la~~t~G~ 206 (258)
T d1e32a2 142 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDV--DLEQVANETHGH 206 (258)
T ss_dssp EEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSC-BCTTC--CHHHHHHHCTTC
T ss_pred cEEEeCCCccccchhhhhcccccceeECCCCCHHHHHHHhhhhccCcc-ccccc--chhhhhhcccCC
Confidence 456688766443221 2467899999999999999987663221 11111 145677888775
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.78 E-value=3.6e-05 Score=84.18 Aligned_cols=181 Identities=12% Similarity=0.079 Sum_probs=103.6
Q ss_pred ccccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhcc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 1056 (1866)
+..++|.++.++.+..++.+...+.+-++|+.|+||||+|+.+.+.-.....-....-+..+...+...+...+......
T Consensus 14 ~~d~ig~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~~~~~i~~~~~~~~~~ 93 (224)
T d1sxjb2 14 LSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQK 93 (224)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHB
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHhccccccccccccccccCCceehhhHHHHHHHh
Confidence 34567777888888888877777667899999999999999885421111100112333444444444333332222211
Q ss_pred CCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCChh-hhcc-CCCCcEEEecC
Q 000202 1057 HCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRELD-VCRN-MDVNMVVKLET 1132 (1866)
Q Consensus 1057 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~-~~~~~~~~l~~ 1132 (1866)
.... -.++.-++|+|++... .....+...+.......++++||.+.. +... ......+++++
T Consensus 94 ~~~~--------------~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr~~~i~~~~ 159 (224)
T d1sxjb2 94 KLHL--------------PPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSK 159 (224)
T ss_dssp CCCC--------------CTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred hccC--------------CCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhhhHHHHHHHHhhhcc
Confidence 1100 1235568889998753 222333222222334566666665533 2111 12236789999
Q ss_pred CChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHH
Q 000202 1133 LSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLL 1172 (1866)
Q Consensus 1133 L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLA 1172 (1866)
++.++-...+.+.+....-.-+ .+....|++.|+|.+--
T Consensus 160 ~~~~~i~~~l~~i~~~e~~~i~-~~~l~~I~~~s~Gd~R~ 198 (224)
T d1sxjb2 160 LSDEDVLKRLLQIIKLEDVKYT-NDGLEAIIFTAEGDMRQ 198 (224)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBC-HHHHHHHHHHHTTCHHH
T ss_pred cchhhhHHHHHHHHHhcccCCC-HHHHHHHHHHcCCcHHH
Confidence 9999999988876642211111 23467899999998753
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.73 E-value=5.9e-05 Score=82.63 Aligned_cols=178 Identities=12% Similarity=0.100 Sum_probs=101.9
Q ss_pred ccccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhcc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 1056 (1866)
+.+++|.++.++.+.+++.....+.+-++|+.|+||||+|+.+++.-..........-+..+...+.......+......
T Consensus 13 ~~divg~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 92 (227)
T d1sxjc2 13 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAST 92 (227)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHB
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccccCCeeeeecchhhcccc
Confidence 34567777888888888877766667799999999999999996531111111112222333333333222222111111
Q ss_pred CCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCChh-hhcc-CCCCcEEEecC
Q 000202 1057 HCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRELD-VCRN-MDVNMVVKLET 1132 (1866)
Q Consensus 1057 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~-~~~~~~~~l~~ 1132 (1866)
. ....+++-.+|+|++... ..-..+...+......++++++|.... +... ......+++++
T Consensus 93 ~---------------~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~sr~~~i~~~~ 157 (227)
T d1sxjc2 93 R---------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQP 157 (227)
T ss_dssp C---------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred c---------------cccCCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHHHhHHHHHHHHhhhcccc
Confidence 0 011344568889999753 222333333333345677777776543 2211 12236789999
Q ss_pred CChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh
Q 000202 1133 LSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1133 L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 1170 (1866)
++.++-.+.+.+.+....-.-+ .+....|++.|+|..
T Consensus 158 ~~~~~i~~~l~~I~~~e~i~i~-~~~l~~i~~~s~Gd~ 194 (227)
T d1sxjc2 158 LPQEAIERRIANVLVHEKLKLS-PNAEKALIELSNGDM 194 (227)
T ss_dssp CCHHHHHHHHHHHHHTTTCCBC-HHHHHHHHHHHTTCH
T ss_pred ccccccccccccccccccccCC-HHHHHHHHHHcCCcH
Confidence 9999998888877643321111 244677899999874
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.72 E-value=4.4e-05 Score=85.30 Aligned_cols=186 Identities=17% Similarity=0.202 Sum_probs=98.3
Q ss_pred ccCCCceeehhhHHHHHHhhhc---------------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeec
Q 000202 183 SESKDLIGVEWRIKEIESLLRT---------------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVR 247 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~---------------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~ 247 (1866)
....+++|.+..+++|.++|.. +....+.+.++|++|+||||+|+++++..... ++..+..
T Consensus 11 ~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~----~~~~~~~ 86 (253)
T d1sxja2 11 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD----ILEQNAS 86 (253)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE----EEEECTT
T ss_pred CCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhh----hhccccc
Confidence 3457899999999999998852 12235678999999999999999999876433 2222222
Q ss_pred cccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC-----HHHHHHHhhccCCCCCCCEEE
Q 000202 248 AAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH-----PRQIELLIGRLDRFASGSQVI 322 (1866)
Q Consensus 248 ~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~-----~~~~~~l~~~~~~~~~gs~Ii 322 (1866)
. ... ................ ................+..++++|+++. ...+..+...... ....++
T Consensus 87 ~---~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~~~~~~~~~~~~~--~~~~ii 158 (253)
T d1sxja2 87 D---VRS-KTLLNAGVKNALDNMS--VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLI 158 (253)
T ss_dssp S---CCC-HHHHHHTGGGGTTBCC--STTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEE
T ss_pred c---chh-hHHHHHHHHHHhhcch--hhhhhhhhhhcccccccceEEEeeeccccccchhhhhHHHhhhhcc--cccccc
Confidence 1 111 1122221111111111 0000111111122355678889999863 1123333322111 123455
Q ss_pred EEccc--cchhcc-CccceeeecCCCCHHHHHHHHHhhcCC-CCCCChhHHHHHHHHHHHhCCCc
Q 000202 323 ITTRD--KQVLTN-CEVDHIYQMKELVHADAHKLFTQCAFR-GDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 323 iTTR~--~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~-~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
+|+.+ ...... ......+++.+++.++-...+....-. +-..++ +...+|++.++|-.
T Consensus 159 ~i~~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~---~~l~~i~~~s~GDi 220 (253)
T d1sxja2 159 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDI 220 (253)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCH
T ss_pred cccccccccccccccceeeeeeccccchhHHHHHHHHHHHHhCCCCCH---HHHHHHHHhCCCcH
Confidence 54432 222222 123568899999999988887764421 111221 34677888888744
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=97.69 E-value=6.4e-05 Score=87.80 Aligned_cols=153 Identities=13% Similarity=0.138 Sum_probs=86.0
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc------ccceEEEEeeccccccccHHHHH
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH------FEGSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
+..|||+.+++++...|.....+ -+.++|.+|+|||+|+..+++++... .+..+|..+.+..-......
T Consensus 22 d~~~gr~~ei~~~~~~L~r~~k~--n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~~--- 96 (387)
T d1qvra2 22 DPVIGRDEEIRRVIQILLRRTKN--NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYR--- 96 (387)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCC--CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------
T ss_pred CCCcCcHHHHHHHHHHHhcCCCC--CCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccCcc---
Confidence 46899999999999999854322 24678999999999999998865442 24567766554411111000
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHhh-cCcEEEEEecCCCH----------HHHHHHhhccCCCCCCCEEEEEcccc
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRLA-RKKVLIVFDDVNHP----------RQIELLIGRLDRFASGSQVIITTRDK 328 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~IiiTTR~~ 328 (1866)
..........+.+... ..+++|++|++... +.-+.|.+.+.. ..-++|-||..+
T Consensus 97 -------------g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~r--g~~~~I~~tT~~ 161 (387)
T d1qvra2 97 -------------GEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLD 161 (387)
T ss_dssp --------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHH
T ss_pred -------------hhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhC--CCcceeeecCHH
Confidence 0011111122222223 34799999999742 112333344332 235677766554
Q ss_pred chhcc------CccceeeecCCCCHHHHHHHHHhhc
Q 000202 329 QVLTN------CEVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 329 ~v~~~------~~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
..... ....+.+.|++.+.+++.+.+...+
T Consensus 162 ey~~~e~d~al~rrF~~v~v~ep~~~~~~~il~~~~ 197 (387)
T d1qvra2 162 EYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 197 (387)
T ss_dssp HHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHhcccccCCCCcHHHHHHHHHHHH
Confidence 33211 1224678999999999999987544
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.64 E-value=0.00037 Score=76.50 Aligned_cols=152 Identities=13% Similarity=0.170 Sum_probs=94.8
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcC---cccccc-cceEEEE-EecCCCCHHHHHHHHHHH
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISY---PEVKVM-FHVIIWV-TVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~---~~~~~~-F~~~~wv-~vs~~~~~~~~~~~i~~~ 1053 (1866)
..+||++++++++..|....-+-+.++|.+|+|||+++..++.. ..+... ....+|. +.+.
T Consensus 19 ~~igRd~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~-------------- 84 (268)
T d1r6bx2 19 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS-------------- 84 (268)
T ss_dssp CCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---------------
T ss_pred cccChHHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeech--------------
Confidence 45789999999999997666666779999999999998887532 111222 2344443 3322
Q ss_pred hccCCCCccCHHHHHHHHHHHh-CCCcEEEEEeCCCCc----------cchhhhcCCCCCCCCCcEEEEccCChhhhccC
Q 000202 1054 LSLHCKDRETDAQVAEKLWQVL-NGEKFLLLLDDVWEQ----------IDLEAVGIPVPGSENGSKIFMASRELDVCRNM 1122 (1866)
Q Consensus 1054 l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 1122 (1866)
+-.........++....+.+.+ +..+.++++|++... .+...+..|.-.. ..-++|.||..+......
T Consensus 85 liag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~r-g~i~vIgatT~eey~~~~ 163 (268)
T d1r6bx2 85 LLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNIF 163 (268)
T ss_dssp --CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECHHHHHCCC
T ss_pred HhccCccchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhC-CCCeEEEeCCHHHHHHHH
Confidence 1111222344455555555555 456799999998742 1233344433322 235788888777664443
Q ss_pred CC-------CcEEEecCCChHHHHHHHHHH
Q 000202 1123 DV-------NMVVKLETLSMKDAWELFCKE 1145 (1866)
Q Consensus 1123 ~~-------~~~~~l~~L~~~~a~~Lf~~~ 1145 (1866)
.. ...+.|++++.+++.+++...
T Consensus 164 e~d~al~rrF~~I~V~Eps~e~t~~IL~~~ 193 (268)
T d1r6bx2 164 EKDRALARRFQKIDITEPSIEETVQIINGL 193 (268)
T ss_dssp CCTTSSGGGEEEEECCCCCHHHHHHHHHHH
T ss_pred hhcHHHHhhhcccccCCCCHHHHHHHHHHh
Confidence 32 247899999999998888653
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.62 E-value=0.00025 Score=76.03 Aligned_cols=150 Identities=15% Similarity=0.219 Sum_probs=84.1
Q ss_pred ceeehhhH--HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHH
Q 000202 188 LIGVEWRI--KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSK 265 (1866)
Q Consensus 188 ~vGr~~~l--~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 265 (1866)
+||-..++ +.+.++..........+.|||.+|+|||.|+.+++++.......++|+... .+...+...
T Consensus 13 ~vg~~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 82 (213)
T d1l8qa2 13 IVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD----------DFAQAMVEH 82 (213)
T ss_dssp CCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH----------HHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEechH----------HHHHHHHHH
Confidence 45765544 334555544333345588999999999999999999887776666676421 222222222
Q ss_pred HhccccccCccchhHHHHHHHhhcCcEEEEEecCCC---HHHHHH-HhhccCC-CCCCCEEEEEccccchhc--------
Q 000202 266 LLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH---PRQIEL-LIGRLDR-FASGSQVIITTRDKQVLT-------- 332 (1866)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~---~~~~~~-l~~~~~~-~~~gs~IiiTTR~~~v~~-------- 332 (1866)
+.... .....+.++ .-=+|+|||++. ...|+. +...+.. ...|.+||+||+......
T Consensus 83 ~~~~~---------~~~~~~~~~-~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~ 152 (213)
T d1l8qa2 83 LKKGT---------INEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLV 152 (213)
T ss_dssp HHHTC---------HHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHH
T ss_pred HHccc---------hhhHHHHHh-hccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHH
Confidence 21111 112223333 345789999973 233332 2222111 235889999998653211
Q ss_pred -cCccceeeecCCCCHHHHHHHHHhhc
Q 000202 333 -NCEVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 333 -~~~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
......+++++ ++.++-.+++.+.+
T Consensus 153 SRL~~g~~~~i~-p~d~~~~~iL~~~a 178 (213)
T d1l8qa2 153 SRFEGGILVEIE-LDNKTRFKIIKEKL 178 (213)
T ss_dssp HHHHTSEEEECC-CCHHHHHHHHHHHH
T ss_pred HHhhCceEEEEC-CCcHHHHHHHHHHH
Confidence 11234566775 46666667776665
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.62 E-value=1e-05 Score=95.26 Aligned_cols=187 Identities=16% Similarity=0.140 Sum_probs=109.2
Q ss_pred cccCcEEEccCCCCCCCC------CCCCCCcccEEEccCCcCCcccC-------------hhHHhcCCCCcEEEccCCCC
Q 000202 1374 WTHAKMIFFMDNDLQTLP------GRPSCPNLLTLFLQRNCRLRVIP-------------PSFFELMTSLKVLNLSKTRI 1434 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~~l~------~~~~~~~L~~L~L~~~~~l~~~p-------------~~~~~~l~~L~~L~Ls~~~i 1434 (1866)
.++|+.|++.+|.+.... .+..+++|+.|++++|. +.... .......+.|++|++++|.+
T Consensus 92 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i 170 (344)
T d2ca6a1 92 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 170 (344)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred CCCcccccccccccccccccchhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeecccccc
Confidence 456788888888775421 12356788888888773 22100 01123467788888888877
Q ss_pred C-----CCChhhcCCCCCcEEecccccCccc-----CCccccCCCCCcEEEccCCCCC-----cCChhhcCCCccceecc
Q 000202 1435 K-----SLPETLVNLKCLQILILRDCDFLFV-----LPPEVGSLECLEVLDLRGTEIK-----MLPKEIGKLTSLRYLTV 1499 (1866)
Q Consensus 1435 ~-----~lp~~i~~L~~L~~L~L~~~~~~~~-----lP~~i~~L~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l 1499 (1866)
. .+...+....+|++|+|++|.+... +...+..+++|++|++++|.+. .+...+..+++|++|++
T Consensus 171 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~L 250 (344)
T d2ca6a1 171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 250 (344)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred cccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhh
Confidence 5 2345566778888888888875421 3344667788888888888765 24455677888888887
Q ss_pred ccccccCCCccccCCCCCCChhhhhc--cccCcEeecccCCCCCcccccccccccccc-CCCCCCEEEeecCCcc
Q 000202 1500 FFFGSMYKSEYIKLPPDLISSDILSR--LQALETLSIDVHPGDKRWDKDVKIVITEVS-GLTKLSSLSFHFPEIE 1571 (1866)
Q Consensus 1500 ~~~~~~~~~~~~~l~~~~~~~~~l~~--L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~l~ 1571 (1866)
++|. +.......+ ...+.. .+.|++|+++++.... .....+...+. ++++|+.|++++|.+.
T Consensus 251 s~n~-i~~~g~~~l------~~~l~~~~~~~L~~L~ls~N~i~~---~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 251 NDCL-LSARGAAAV------VDAFSKLENIGLQTLRLQYNEIEL---DAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp TTCC-CCHHHHHHH------HHHHHTCSSCCCCEEECCSSCCBH---HHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred hcCc-cCchhhHHH------HHHhhhccCCCCCEEECCCCcCCh---HHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 6653 111100000 011222 2457778877554221 11112233332 4567888888777654
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=0.00011 Score=81.14 Aligned_cols=171 Identities=17% Similarity=0.175 Sum_probs=94.0
Q ss_pred CCceeehhhHHHHHHhhh---c-------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccH
Q 000202 186 KDLIGVEWRIKEIESLLR---T-------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRL 255 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~---~-------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 255 (1866)
.+++|.+...++|.+.+. . +....+.+.++|++|+|||++|+++++..... ++..........
T Consensus 12 ~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~----~~~i~~~~l~~~--- 84 (256)
T d1lv7a_ 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP----FFTISGSDFVEM--- 84 (256)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC----EEEECSCSSTTS---
T ss_pred HHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCC----EEEEEhHHhhhc---
Confidence 468888888777765432 1 12235678899999999999999999876432 222222211000
Q ss_pred HHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccCCC--CC
Q 000202 256 DDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLDRF--AS 317 (1866)
Q Consensus 256 ~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~~ 317 (1866)
..+ .........+...-+..+++|++||++.. ..+..++..+... ..
T Consensus 85 ----------~~g-----~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~ 149 (256)
T d1lv7a_ 85 ----------FVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (256)
T ss_dssp ----------CCC-----CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred ----------chh-----HHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCC
Confidence 000 00000112222223567789999998521 1123344333322 23
Q ss_pred CCEEEEEccccchhcc-C----ccceeeecCCCCHHHHHHHHHhhcCCCCC-CChhHHHHHHHHHHHhCCC
Q 000202 318 GSQVIITTRDKQVLTN-C----EVDHIYQMKELVHADAHKLFTQCAFRGDH-LDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 318 gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~Gl 382 (1866)
+.-||.||.....+.. . ..++.++++..+.++-.++|..+.-+... ...+ ...+++.+.|.
T Consensus 150 ~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~----~~~la~~t~G~ 216 (256)
T d1lv7a_ 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGF 216 (256)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTC
T ss_pred CEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCcccC----HHHHHHhCCCC
Confidence 3345557776544321 1 23578999999999999999877633221 1222 34556666664
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=97.58 E-value=0.00024 Score=78.25 Aligned_cols=172 Identities=14% Similarity=0.112 Sum_probs=94.9
Q ss_pred cccCCCceeehhhHHHHHHhhhcC---CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTG---SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~---~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
|...+++||-+..+++|..++... .....-+.++|++|+||||+|+.+++.....| ...+... ... ...
T Consensus 5 P~~~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~----~~~~~~~---~~~-~~~ 76 (239)
T d1ixsb2 5 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL----RVTSGPA---IEK-PGD 76 (239)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHHTCCE----EEEETTT---CCS-HHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCe----EeccCCc---ccc-chh
Confidence 344568999999999998887632 22355678999999999999999998765443 1111111 000 000
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccC--------C----------CCCC
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLD--------R----------FASG 318 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~--------~----------~~~g 318 (1866)
.. ..+...+. .+.++++|+++. ...-+.+..... . ..+.
T Consensus 77 ~~--------------------~~~~~~~~-~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 135 (239)
T d1ixsb2 77 LA--------------------AILANSLE-EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 135 (239)
T ss_dssp HH--------------------HHHHTTCC-TTCEEEEETGGGCCHHHHHHHHHHHHHSEEEEECSCTTCCCEEEEECCC
T ss_pred hH--------------------HHHHhhcc-CCCeeeeecccccchhHHHhhhhhhhhhhhhhhhccchhhhhcccCCCC
Confidence 00 11111222 234566788763 222122211110 0 0122
Q ss_pred CEEEEE-ccccchhc--cCccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 319 SQVIIT-TRDKQVLT--NCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 319 s~IiiT-TR~~~v~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
..++.+ ++...... .......+.+...+.++..+.+.+.+..... ....+....|++.++|.+-
T Consensus 136 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i--~~~~~~l~~ia~~s~gd~R 202 (239)
T d1ixsb2 136 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV--RITEEAALEIGRRSRGTMR 202 (239)
T ss_dssp CEEEEEESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCC--CBCHHHHHHHHHHTTSSHH
T ss_pred EEEEeeccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCC--ccchHHHHHHHHHcCCCHH
Confidence 334444 44332221 1123567889999999988887766533221 2235578889999999653
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.56 E-value=7.5e-05 Score=82.40 Aligned_cols=187 Identities=12% Similarity=0.054 Sum_probs=104.5
Q ss_pred cccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCccc-ccccceEEEEEecCCCCHHHHHHHHHHHhcc
Q 000202 978 TAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEV-KVMFHVIIWVTVSRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 1056 (1866)
.++.|.++.++.+..++.....+.+.++|+.|+||||+|+.+++.-.- .........+..+.......+...+-.....
T Consensus 12 ~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (237)
T d1sxjd2 12 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARL 91 (237)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHS
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccccchHHHHHHHHHhhh
Confidence 345566677788888888777777889999999999999999653111 1112223344444444444433333222211
Q ss_pred CCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCChh-hhccC-CCCcEEEecC
Q 000202 1057 HCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRELD-VCRNM-DVNMVVKLET 1132 (1866)
Q Consensus 1057 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~ 1132 (1866)
.... ... ..+......+.-.+|+|++... ..+..+...+.......++|+||.+.. +.... .....+++++
T Consensus 92 ~~~~-~~~----~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l~sr~~~i~f~~ 166 (237)
T d1sxjd2 92 TVSK-PSK----HDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKA 166 (237)
T ss_dssp CCCC-CCT----THHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCC
T ss_pred hhhh-hhH----HHHhhccccCceEEEEecccccCHHHHHHHhhccccccccccccccccccccccccccchhhhhcccc
Confidence 1111 111 1122223344457899998753 233333222222234566776665432 21111 1125789999
Q ss_pred CChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh
Q 000202 1133 LSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1133 L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 1170 (1866)
++.++..+.+.+.+....-.. -.+....|++.++|..
T Consensus 167 ~~~~~~~~~L~~i~~~e~i~i-~~~~l~~ia~~s~gd~ 203 (237)
T d1sxjd2 167 LDASNAIDRLRFISEQENVKC-DDGVLERILDISAGDL 203 (237)
T ss_dssp CCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHTSSCH
T ss_pred ccccccchhhhhhhhhhcCcC-CHHHHHHHHHHcCCCH
Confidence 999999999987765332111 1345677889998865
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.50 E-value=0.00012 Score=81.57 Aligned_cols=173 Identities=15% Similarity=0.180 Sum_probs=95.6
Q ss_pred CCceeehhhHHHHHHhhh-----------cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 186 KDLIGVEWRIKEIESLLR-----------TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~-----------~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
.+++|.+...++|.+.+. .+-...+.|.++|.+|+|||+||++++...... +|......
T Consensus 7 ~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~----~~~~~~~~------ 76 (265)
T d1r7ra3 7 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIKGPE------ 76 (265)
T ss_dssp SSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCE----EEEECHHH------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCc----EEEEEHHH------
Confidence 457777777766666542 122335678999999999999999999977443 23221111
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH------------H----HHHHHhhccCCC--C
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP------------R----QIELLIGRLDRF--A 316 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~------------~----~~~~l~~~~~~~--~ 316 (1866)
+ . .... ..........+...-...+++|+|||++.. . .+..++..+... .
T Consensus 77 ---l----~----~~~~-~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 144 (265)
T d1r7ra3 77 ---L----L----TMWF-GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 144 (265)
T ss_dssp ---H----H----TSCT-TTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC-----
T ss_pred ---h----h----hccc-cchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCC
Confidence 1 0 0000 000011112222333567899999999631 0 123444444322 2
Q ss_pred CCCEEEEEccccchhcc-C----ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 317 SGSQVIITTRDKQVLTN-C----EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 317 ~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
++--||.||...+-+.. . .....++++..+.++-.++|..+.-+.. ... .....++++++.|..
T Consensus 145 ~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~-~~~--~~~l~~la~~t~g~s 213 (265)
T d1r7ra3 145 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP-VAK--DVDLEFLAKMTNGFS 213 (265)
T ss_dssp -CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC-------CCCCHHHHHHHCSSC
T ss_pred CCEEEEEeCCCchhCCHHHhCCCCccEEEEecchHHHHHHHHHHHHhccCC-chh--hhhHHHHHhcCCCCC
Confidence 34456677776644321 1 2367899999999999999987653211 111 011355677777754
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.49 E-value=9.9e-05 Score=81.03 Aligned_cols=178 Identities=13% Similarity=0.037 Sum_probs=99.4
Q ss_pred ccccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccc-cccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVK-VMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+..+.|.++.++++..++.....+.+-++|+.|+||||+|+.+.+.-... ..++. +-++.+...+...+...+.....
T Consensus 23 ~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~-~e~n~s~~~~~~~~~~~~~~~~~ 101 (231)
T d1iqpa2 23 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNF-LELNASDERGINVIREKVKEFAR 101 (231)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHE-EEEETTCHHHHHTTHHHHHHHHH
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCe-eEEecCcccchhHHHHHHHHHHh
Confidence 34566777888888899987777778899999999999999995421110 01121 22233321111111111111100
Q ss_pred cCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCChh-hhccC-CCCcEEEec
Q 000202 1056 LHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRELD-VCRNM-DVNMVVKLE 1131 (1866)
Q Consensus 1056 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~ 1131 (1866)
. ......++.++++|++.. ...+..+...+........+|.||.... +.... .....+.+.
T Consensus 102 ~---------------~~~~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~~~i~~~ 166 (231)
T d1iqpa2 102 T---------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFR 166 (231)
T ss_dssp S---------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECC
T ss_pred h---------------hhccCCCceEEeehhhhhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCcccccccc
Confidence 0 001134667888999875 2334444333322233445566655433 22111 112578999
Q ss_pred CCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1132 TLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1132 ~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
+.+.++....+.+.+....-.- -.+....|++.|+|..-
T Consensus 167 ~~~~~~~~~~l~~~~~~e~i~i-~~~~l~~I~~~~~gdiR 205 (231)
T d1iqpa2 167 PLRDEDIAKRLRYIAENEGLEL-TEEGLQAILYIAEGDMR 205 (231)
T ss_dssp CCCHHHHHHHHHHHHHTTTCEE-CHHHHHHHHHHHTTCHH
T ss_pred ccchhhHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHH
Confidence 9999999888887765432211 13446778899998753
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.48 E-value=0.00011 Score=81.78 Aligned_cols=190 Identities=12% Similarity=0.104 Sum_probs=91.7
Q ss_pred ccccchhhHHHHHHHHHhccC-CccEEEEEcCCCchHHHHHHHHhcCc----ccccccceEEEEEecC------------
Q 000202 977 VTAVNYTQRNVRKIFRYVNDV-TASKIGVYGVGGIGKTAALKALISYP----EVKVMFHVIIWVTVSR------------ 1039 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~-~~~vi~I~G~gGvGKTtLa~~v~~~~----~~~~~F~~~~wv~vs~------------ 1039 (1866)
+.++.|.++..+.+..++... ...-+.++|++|+||||+|+++++.- .....++...+...+.
T Consensus 10 ~~diig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (252)
T d1sxje2 10 LNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPY 89 (252)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSS
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccccccccccccchhhhhhccCCc
Confidence 335666666666676666433 34457799999999999999986531 1111112222211110
Q ss_pred ---------CCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcE
Q 000202 1040 ---------YWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSK 1108 (1866)
Q Consensus 1040 ---------~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 1108 (1866)
...................... ...-.....++.-++|||++... ..+..+...+.......+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~iiiide~d~l~~~~~~~l~~~~e~~~~~~~ 163 (252)
T d1sxje2 90 HLEITPSDMGNNDRIVIQELLKEVAQMEQVD------FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIR 163 (252)
T ss_dssp EEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEE
T ss_pred cceeeecccccCCcceeeehhhhhhhhhhhh------hhhcccccCCCceEEEeccccccccccchhhhccccccccccc
Confidence 0111111222222111100000 00001112334558889998763 333333332322334567
Q ss_pred EEEccCChh-hhcc-CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHH
Q 000202 1109 IFMASRELD-VCRN-MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLL 1172 (1866)
Q Consensus 1109 IivTTR~~~-v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLA 1172 (1866)
+|+||.+.+ +... ..-...+++.+++.++..+.+.+.+.........++....|++.|.|.+-.
T Consensus 164 ~Il~tn~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~~~l~~i~~~s~Gd~R~ 229 (252)
T d1sxje2 164 LIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRV 229 (252)
T ss_dssp EEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHH
T ss_pred ceeeeccccchhhhhhcchheeeecccchhhHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCcHHH
Confidence 777776543 2111 011257889999999999988765532111111124556788999998743
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.48 E-value=0.00076 Score=75.70 Aligned_cols=166 Identities=14% Similarity=0.220 Sum_probs=102.5
Q ss_pred cchhhHHHHHHHHHhc------cCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHH
Q 000202 980 VNYTQRNVRKIFRYVN------DVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l~------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 1053 (1866)
+.+|+.+++++..++. ....+.+.|+|++|+||||+|+.+++...-... ...+++..............+..+
T Consensus 18 l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 96 (276)
T d1fnna2 18 LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIARS 96 (276)
T ss_dssp CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcccC-CcEEEecchhhhhhhhhhhhhHHh
Confidence 4577788888887773 233467899999999999999999653222222 234577777778888888888888
Q ss_pred hccCCCC-ccCHHHHHHHHHHHh--CCCcEEEEEeCCCCccc-----hhhhcCCCCC-CCCCcEEEEccCChhhhccCC-
Q 000202 1054 LSLHCKD-RETDAQVAEKLWQVL--NGEKFLLLLDDVWEQID-----LEAVGIPVPG-SENGSKIFMASRELDVCRNMD- 1123 (1866)
Q Consensus 1054 l~~~~~~-~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~~-----~~~l~~~l~~-~~~gs~IivTTR~~~v~~~~~- 1123 (1866)
.+..... ..........+.+.+ ......+++|+++.... ...+...... ......+|.++..........
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 176 (276)
T d1fnna2 97 LNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDP 176 (276)
T ss_dssp TTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCH
T ss_pred hhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhhhhhHHHHHhccccccccceEEeecCCchhhhhhcch
Confidence 7765433 334455555555554 34567778888765321 1222221111 112234555555443322211
Q ss_pred ------CCcEEEecCCChHHHHHHHHHHh
Q 000202 1124 ------VNMVVKLETLSMKDAWELFCKEV 1146 (1866)
Q Consensus 1124 ------~~~~~~l~~L~~~~a~~Lf~~~~ 1146 (1866)
....+.+.+.+.++.++.+.+.+
T Consensus 177 ~~~~r~~~~~i~~~~~~~~e~~~il~~r~ 205 (276)
T d1fnna2 177 STRGIMGKYVIRFSPYTKDQIFDILLDRA 205 (276)
T ss_dssp HHHHHHTTCEEECCCCBHHHHHHHHHHHH
T ss_pred hhhhhhcchhccccchhHHHHHHHHHHHH
Confidence 12467899999999999998765
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=97.45 E-value=0.00019 Score=79.04 Aligned_cols=170 Identities=15% Similarity=0.169 Sum_probs=93.6
Q ss_pred ccCCCceeehhhHHHHHHhhhcC---CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTG---SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~---~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
...+++||.+..+++|..++... ....+-+.++|++|+||||+|+.+++.+...|- ..+... ......+.
T Consensus 6 ~~~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~----~~~~~~---~~~~~~~~ 78 (238)
T d1in4a2 6 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----VTSGPV---LVKQGDMA 78 (238)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----EEETTT---CCSHHHHH
T ss_pred CcHHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhccCCCcc----cccCcc---cccHHHHH
Confidence 34578999999999999888521 222345789999999999999999987654431 111111 11111111
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH--HHHHHHhhccC------------------CCCCCC
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP--RQIELLIGRLD------------------RFASGS 319 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~------------------~~~~gs 319 (1866)
.++. ...++..+++|.++.. ..-+.+..... ...+..
T Consensus 79 -~~~~----------------------~~~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (238)
T d1in4a2 79 -AILT----------------------SLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 135 (238)
T ss_dssp -HHHH----------------------HCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCC
T ss_pred -HHHH----------------------hhccCCchHHHHHHHhhhHHHhhcccceeeeeeeeeecCcccccccccCCCCe
Confidence 1111 1234455666766531 11111111110 011234
Q ss_pred EEEEEccccc-hhc--cCccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 320 QVIITTRDKQ-VLT--NCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 320 ~IiiTTR~~~-v~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
.+|.+|.... +.. ......++.++..+.++...++...+.... .....+....+++.++|-+-
T Consensus 136 ~~I~at~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~l~~i~~~s~gd~R 201 (238)
T d1in4a2 136 TLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPR 201 (238)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHH
T ss_pred EEEEecCCCccccccceeeeeEEEEecCCCHHHHHHHHHHhhhhcc--chhhHHHHHHHHHhCCCCHH
Confidence 5555555443 221 112345678999999999888877663222 12234557778888887543
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.35 E-value=3.6e-05 Score=90.52 Aligned_cols=192 Identities=15% Similarity=0.062 Sum_probs=115.9
Q ss_pred cccccCcEEEccCCCCCC-----CC-CCCCCCcccEEEccCCcCCc---ccCh------hHHhcCCCCcEEEccCCCCCC
Q 000202 1372 EEWTHAKMIFFMDNDLQT-----LP-GRPSCPNLLTLFLQRNCRLR---VIPP------SFFELMTSLKVLNLSKTRIKS 1436 (1866)
Q Consensus 1372 ~~~~~l~~l~l~~~~l~~-----l~-~~~~~~~L~~L~L~~~~~l~---~~p~------~~~~~l~~L~~L~Ls~~~i~~ 1436 (1866)
.....++.|++++|.+.. +. .+...++|+.|+++++..-. ..|. ..+..+++|+.|+|++|.+..
T Consensus 28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 107 (344)
T d2ca6a1 28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 107 (344)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc
Confidence 345678888998887642 11 34567888999988663211 1111 113457889999999998763
Q ss_pred -----CChhhcCCCCCcEEecccccCcccCC-------------ccccCCCCCcEEEccCCCCC-----cCChhhcCCCc
Q 000202 1437 -----LPETLVNLKCLQILILRDCDFLFVLP-------------PEVGSLECLEVLDLRGTEIK-----MLPKEIGKLTS 1493 (1866)
Q Consensus 1437 -----lp~~i~~L~~L~~L~L~~~~~~~~lP-------------~~i~~L~~L~~L~l~~~~i~-----~lp~~i~~L~~ 1493 (1866)
+...+...++|+.|++++|.+...-. ......+.|+.|++++|.+. .+...+...++
T Consensus 108 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~ 187 (344)
T d2ca6a1 108 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187 (344)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred ccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhh
Confidence 44566678889999999886421100 01134667888998888775 23444667778
Q ss_pred cceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1494 LRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1494 L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
|+.|++.++.- ....... .-...+..+++|+.|+++.+.... .....+...+..+++|++|++++|.+..
T Consensus 188 L~~L~L~~n~i-~~~g~~~-----~l~~~l~~~~~L~~L~Ls~N~i~~---~g~~~L~~~l~~~~~L~~L~Ls~n~i~~ 257 (344)
T d2ca6a1 188 LHTVKMVQNGI-RPEGIEH-----LLLEGLAYCQELKVLDLQDNTFTH---LGSSALAIALKSWPNLRELGLNDCLLSA 257 (344)
T ss_dssp CCEEECCSSCC-CHHHHHH-----HHHTTGGGCTTCCEEECCSSCCHH---HHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred hcccccccccc-ccccccc-----chhhhhcchhhhcccccccccccc---cccccccccccccccchhhhhhcCccCc
Confidence 88888765421 1000000 001125567788888887543211 1112344556778888888888887654
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.34 E-value=0.00059 Score=74.79 Aligned_cols=51 Identities=12% Similarity=0.033 Sum_probs=35.5
Q ss_pred CCceeehhhHHHHHHhhh-------c-CCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 186 KDLIGVEWRIKEIESLLR-------T-GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~-------~-~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
..+||..++++.+.+.+. . .....+-|.++|++|+|||++|+++++.....
T Consensus 9 ~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~~~ 67 (246)
T d1d2na_ 9 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP 67 (246)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCS
T ss_pred cCCcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhccccc
Confidence 347777766655444332 1 22346678999999999999999999876443
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=2.2e-05 Score=80.89 Aligned_cols=84 Identities=23% Similarity=0.118 Sum_probs=60.8
Q ss_pred hhHHhcCCCCcEEEccCCCCCCCC---hhhcCCCCCcEEecccccCcccCCc-cccCCCCCcEEEccCCCCCcCCh----
Q 000202 1415 PSFFELMTSLKVLNLSKTRIKSLP---ETLVNLKCLQILILRDCDFLFVLPP-EVGSLECLEVLDLRGTEIKMLPK---- 1486 (1866)
Q Consensus 1415 ~~~~~~l~~L~~L~Ls~~~i~~lp---~~i~~L~~L~~L~L~~~~~~~~lP~-~i~~L~~L~~L~l~~~~i~~lp~---- 1486 (1866)
..++..+++|++|+|++|+|+.++ ..+..+++|++|+|++|.+. .++. ...+..+|+.|++++|.+.....
T Consensus 58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~ 136 (162)
T d1koha1 58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQST 136 (162)
T ss_dssp HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccchh
Confidence 445577999999999999998664 45778999999999999854 4443 23344578899999998874421
Q ss_pred ----hhcCCCccceecc
Q 000202 1487 ----EIGKLTSLRYLTV 1499 (1866)
Q Consensus 1487 ----~i~~L~~L~~L~l 1499 (1866)
-+..+++|+.|+-
T Consensus 137 y~~~i~~~~P~L~~LDg 153 (162)
T d1koha1 137 YISAIRERFPKLLRLDG 153 (162)
T ss_dssp HHHHHHTTSTTCCEETT
T ss_pred HHHHHHHHCCCCCEECc
Confidence 1456777777764
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=0.00039 Score=76.34 Aligned_cols=187 Identities=10% Similarity=0.053 Sum_probs=99.1
Q ss_pred cccccchhhHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHh
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQL 1054 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 1054 (1866)
.+..++|.++.++.+..++...+. ..+-++|..|+||||+|+.+.+.-......+ ..+.........+...-
T Consensus 10 ~~~dlig~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~-------~~~~~~~~~~~~i~~~~ 82 (239)
T d1njfa_ 10 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIEQGR 82 (239)
T ss_dssp SGGGSCSCHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSC-------SSCCSCSHHHHHHHHTC
T ss_pred CHHHccChHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccc-------cCccccchHHHHHHcCC
Confidence 344567777888888888865554 4578999999999999999854211100000 00011111111111110
Q ss_pred cc-----CCCCccCHHHHHHHHHHHh-----CCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCChhh-hcc
Q 000202 1055 SL-----HCKDRETDAQVAEKLWQVL-----NGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRELDV-CRN 1121 (1866)
Q Consensus 1055 ~~-----~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~v-~~~ 1121 (1866)
.. ...+....++... +.+.. .+++-++|||+++.. ..-+.+...+.....++++|.||.+.+- ...
T Consensus 83 ~~~~~~~~~~~~~~i~~ir~-~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~~ 161 (239)
T d1njfa_ 83 FVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 161 (239)
T ss_dssp CTTEEEEETTCSSSHHHHHH-HHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred CCeEEEecchhcCCHHHHHH-HHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCccccChh
Confidence 00 0001111111111 11211 345668899999863 2223333333333456778777766433 111
Q ss_pred C-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1122 M-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1122 ~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
. .-...+.+.+++.++-.+.+...+......- -++....|++.++|.+-
T Consensus 162 i~SRc~~i~~~~~~~~~i~~~l~~i~~~e~~~~-~~~~l~~i~~~s~Gd~R 211 (239)
T d1njfa_ 162 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLR 211 (239)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHTTTCHH
T ss_pred HhhhhcccccccCcHHHhhhHHHHHHhhhccCC-CHHHHHHHHHHcCCCHH
Confidence 1 1236789999999998888776653221111 12346678999999884
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.19 E-value=0.00043 Score=71.60 Aligned_cols=148 Identities=15% Similarity=0.142 Sum_probs=83.0
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcC---ccc-ccccceEEEEEecCCCCHHHHHHHHHHHh
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISY---PEV-KVMFHVIIWVTVSRYWNTRKIQKQVLRQL 1054 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~---~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 1054 (1866)
..+||++++++++..|....-+-+.++|.+|+|||+++..++.. .++ ..--+..+|.- |...++
T Consensus 23 ~~igRd~Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~l-----d~~~Li------- 90 (195)
T d1jbka_ 23 PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL-----DMGALV------- 90 (195)
T ss_dssp CCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE-----CHHHHH-------
T ss_pred CCcCcHHHHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEe-----eHHHHh-------
Confidence 35688999999999997666667889999999999998887531 122 22234445432 111111
Q ss_pred ccCCCCccCHHHHHHHHHHHh--CCCcEEEEEeCCCCcc---------chhh-hcCCCCCCCCCcEEEEccCChhhhccC
Q 000202 1055 SLHCKDRETDAQVAEKLWQVL--NGEKFLLLLDDVWEQI---------DLEA-VGIPVPGSENGSKIFMASRELDVCRNM 1122 (1866)
Q Consensus 1055 ~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~---------~~~~-l~~~l~~~~~gs~IivTTR~~~v~~~~ 1122 (1866)
.........++....+.+.+ ...+.+|++|++.... +... ++..+.. ..-++|.||..+......
T Consensus 91 -Ag~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~r--g~l~~IgatT~eey~~~~ 167 (195)
T d1jbka_ 91 -AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQYI 167 (195)
T ss_dssp -TTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHHHHHHHT
T ss_pred -ccCCccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhC--CCceEEecCCHHHHHHHH
Confidence 11111122233333333333 3457999999996421 1112 2222211 224677776655543322
Q ss_pred C-------CCcEEEecCCChHHHHHH
Q 000202 1123 D-------VNMVVKLETLSMKDAWEL 1141 (1866)
Q Consensus 1123 ~-------~~~~~~l~~L~~~~a~~L 1141 (1866)
. -...+.|+..+.+++..+
T Consensus 168 e~d~aL~rrF~~I~V~Ep~~e~t~~I 193 (195)
T d1jbka_ 168 EKDAALERRFQKVFVAEPSVEDTIAI 193 (195)
T ss_dssp TTCHHHHTTEEEEECCCCCHHHHHTT
T ss_pred HcCHHHHhcCCEeecCCCCHHHHHHH
Confidence 2 125778888888877653
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.99 E-value=0.0028 Score=71.29 Aligned_cols=167 Identities=16% Similarity=0.172 Sum_probs=95.8
Q ss_pred cchhhHHHHHHHHHh-----ccCC---c-cEEEEEcCCCchHHHHHHHHhcCccc----ccccceEEEEEecCCCCHHHH
Q 000202 980 VNYTQRNVRKIFRYV-----NDVT---A-SKIGVYGVGGIGKTAALKALISYPEV----KVMFHVIIWVTVSRYWNTRKI 1046 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l-----~~~~---~-~vi~I~G~gGvGKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~ 1046 (1866)
+.+|+.++++|.+.+ .... . .++.++|++|+||||+++.+++.-.- ........++...........
T Consensus 18 ~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (287)
T d1w5sa2 18 LRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTI 97 (287)
T ss_dssp CSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeeccccccchhhH
Confidence 346667777777655 1111 1 23556799999999999999654211 111134557777777788888
Q ss_pred HHHHHHHhccCCCC-ccCHHHHHHHHHHHh--CCCcEEEEEeCCCCcc--------c---hhhhc---CCCCCCCCCcEE
Q 000202 1047 QKQVLRQLSLHCKD-RETDAQVAEKLWQVL--NGEKFLLLLDDVWEQI--------D---LEAVG---IPVPGSENGSKI 1109 (1866)
Q Consensus 1047 ~~~i~~~l~~~~~~-~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~--------~---~~~l~---~~l~~~~~gs~I 1109 (1866)
...+...+...... ..........+.+.. .+...++++|.+.... . +..+. ........-..|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~i 177 (287)
T d1w5sa2 98 LSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFL 177 (287)
T ss_dssp HHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEE
T ss_pred HHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccchhHHHHHHHHHHhcchhhcccceeEE
Confidence 88888777654322 334444455555544 3566788888775321 1 11111 111112222334
Q ss_pred EEccCChhhh-------c-cCCCCcEEEecCCChHHHHHHHHHHh
Q 000202 1110 FMASRELDVC-------R-NMDVNMVVKLETLSMKDAWELFCKEV 1146 (1866)
Q Consensus 1110 ivTTR~~~v~-------~-~~~~~~~~~l~~L~~~~a~~Lf~~~~ 1146 (1866)
++++...... . .......+.+++.+.++..+++...+
T Consensus 178 ~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~ 222 (287)
T d1w5sa2 178 LVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRA 222 (287)
T ss_dssp EEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred eecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhH
Confidence 4444333221 1 11224678899999999999998765
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.91 E-value=0.0012 Score=72.13 Aligned_cols=148 Identities=15% Similarity=0.184 Sum_probs=78.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+-|.++|++|+|||+||+++.+... . ..+.++.+ .+.. ... ......+.+.+...-...
T Consensus 42 ~~giLl~GppGtGKT~la~aia~~~~--~---~~~~i~~~------~l~~--------~~~-g~~~~~l~~~f~~a~~~~ 101 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLARAVAGEAR--V---PFITASGS------DFVE--------MFV-GVGAARVRDLFETAKRHA 101 (247)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHTT--C---CEEEEEHH------HHHH--------SCT-THHHHHHHHHHHHHTTSS
T ss_pred CceEEEecCCCCChhHHHHHHHHHcC--C---CEEEEEhH------Hhhh--------ccc-cHHHHHHHHHHHHHHHcC
Confidence 35688999999999999999965321 1 12223321 1111 110 111122222222333567
Q ss_pred cEEEEEeCCCCc------------c----chhhhcCCCCCC-CCCcEEEE-ccCChhhh-ccC----CCCcEEEecCCCh
Q 000202 1079 KFLLLLDDVWEQ------------I----DLEAVGIPVPGS-ENGSKIFM-ASRELDVC-RNM----DVNMVVKLETLSM 1135 (1866)
Q Consensus 1079 r~LlVlDdv~~~------------~----~~~~l~~~l~~~-~~gs~Iiv-TTR~~~v~-~~~----~~~~~~~l~~L~~ 1135 (1866)
+++|+|||++.. . ....+...+... .+...|+| ||...+-. ..+ ..+..+.+...+.
T Consensus 102 p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~ 181 (247)
T d1ixza_ 102 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 181 (247)
T ss_dssp SEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCH
T ss_pred CEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCH
Confidence 899999998521 0 011121111111 12223433 66654432 111 3457899999999
Q ss_pred HHHHHHHHHHhcCCCC--CchHHHHHHHHHHHcCCCh
Q 000202 1136 KDAWELFCKEVGGIIQ--SPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1136 ~~a~~Lf~~~~~~~~~--~~~~~~~~~~I~~~c~GlP 1170 (1866)
++..++|......... ..++ ..+++.|.|.-
T Consensus 182 ~eR~~il~~~l~~~~~~~~~~~----~~la~~t~g~s 214 (247)
T d1ixza_ 182 KGREQILRIHARGKPLAEDVDL----ALLAKRTPGFV 214 (247)
T ss_dssp HHHHHHHHHHHTTSCBCTTCCH----HHHHHTCTTCC
T ss_pred HHHHHHHHHHhcccCCccccCH----HHHHHHCCCCC
Confidence 9999999887754332 2233 34667787764
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.002 Score=68.53 Aligned_cols=173 Identities=13% Similarity=0.064 Sum_probs=94.7
Q ss_pred hHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcCcc--cccccceEEEEEecCCCCHHHHHHHHHHHhccC---
Q 000202 984 QRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISYPE--VKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLH--- 1057 (1866)
Q Consensus 984 ~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~--~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~--- 1057 (1866)
+...+++.+.+...+. ..+-++|..|+||||+|+.+.+.-. ...... ......+ .+.+.......
T Consensus 8 ~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~-----~~~~~~~----~~~i~~~~~~~~~~ 78 (207)
T d1a5ta2 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHK-----SCGHCRG----CQLMQAGTHPDYYT 78 (207)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTB-----CCSCSHH----HHHHHHTCCTTEEE
T ss_pred HHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcccccccccc-----cccccch----hhhhhhccccccch
Confidence 3455666666655554 4588999999999999998754210 000000 0000000 01111111000
Q ss_pred -----CCCccCHHHHHHHHHHHh-----CCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCChh-hhccC-C
Q 000202 1058 -----CKDRETDAQVAEKLWQVL-----NGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRELD-VCRNM-D 1123 (1866)
Q Consensus 1058 -----~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~-~ 1123 (1866)
.......++ +..+.+.+ .+++-++|+||++.. .....+...+.....+.++|.||++.+ +.... .
T Consensus 79 ~~~~~~~~~i~~~~-ir~l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~S 157 (207)
T d1a5ta2 79 LAPEKGKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRS 157 (207)
T ss_dssp ECCCTTCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred hhhhhcccccccch-hhHHhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcc
Confidence 000111122 22223332 356679999999863 345555544444456788888777754 32221 2
Q ss_pred CCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHH
Q 000202 1124 VNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLL 1172 (1866)
Q Consensus 1124 ~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLA 1172 (1866)
-...+.+.+++.++....+.+...- .++.+..|++.++|.|-.
T Consensus 158 Rc~~i~~~~~~~~~~~~~L~~~~~~------~~~~~~~i~~~s~Gs~r~ 200 (207)
T d1a5ta2 158 RCRLHYLAPPPEQYAVTWLSREVTM------SQDALLAALRLSAGSPGA 200 (207)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHCCC------CHHHHHHHHHHTTTCHHH
T ss_pred eeEEEecCCCCHHHHHHHHHHcCCC------CHHHHHHHHHHcCCCHHH
Confidence 2368999999999998888765421 134567788899998844
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.83 E-value=0.00027 Score=72.34 Aligned_cols=80 Identities=30% Similarity=0.279 Sum_probs=58.4
Q ss_pred CCCcccEEEccCCcCCcccC--hhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEecccccCcccCCc-------c
Q 000202 1395 SCPNLLTLFLQRNCRLRVIP--PSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILILRDCDFLFVLPP-------E 1464 (1866)
Q Consensus 1395 ~~~~L~~L~L~~~~~l~~~p--~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lP~-------~ 1464 (1866)
.+++|++|+|++| .+..++ ...+..+++|++|+|++|.|+.+++ ......+|+.|++++|.+...... .
T Consensus 63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i 141 (162)
T d1koha1 63 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141 (162)
T ss_dssp HCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred hCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence 4667888888877 455554 2445778999999999999998875 233445789999999987654442 2
Q ss_pred ccCCCCCcEEE
Q 000202 1465 VGSLECLEVLD 1475 (1866)
Q Consensus 1465 i~~L~~L~~L~ 1475 (1866)
+..+++|+.||
T Consensus 142 ~~~~P~L~~LD 152 (162)
T d1koha1 142 RERFPKLLRLD 152 (162)
T ss_dssp HTTSTTCCEET
T ss_pred HHHCCCCCEEC
Confidence 56789999887
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.0032 Score=68.93 Aligned_cols=174 Identities=16% Similarity=0.207 Sum_probs=92.7
Q ss_pred cccccchhhHHHHHHHHHhc---------cCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHH
Q 000202 976 NVTAVNYTQRNVRKIFRYVN---------DVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKI 1046 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~---------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 1046 (1866)
++.|...-.+++.+++.++. ....+.+.++|++|+|||++|+.+.+... . ..+-+..+.-.+
T Consensus 13 Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~--~---~~~~i~~~~l~~---- 83 (256)
T d1lv7a_ 13 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--V---PFFTISGSDFVE---- 83 (256)
T ss_dssp GSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT--C---CEEEECSCSSTT----
T ss_pred HHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcC--C---CEEEEEhHHhhh----
Confidence 44444444445555555552 12245688999999999999999964321 1 112233222110
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc------------cc----hhhhcCCCC--CCCCCcE
Q 000202 1047 QKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ------------ID----LEAVGIPVP--GSENGSK 1108 (1866)
Q Consensus 1047 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~------------~~----~~~l~~~l~--~~~~gs~ 1108 (1866)
. ........+.+.+...-+..+++|++||++.. .. ...+...+. ....+--
T Consensus 84 ----------~-~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~ 152 (256)
T d1lv7a_ 84 ----------M-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 152 (256)
T ss_dssp ----------S-CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEE
T ss_pred ----------c-chhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEE
Confidence 0 01122233333343444667899999998520 01 111211111 1223344
Q ss_pred EEEccCChhhhc-c----CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1109 IFMASRELDVCR-N----MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1109 IivTTR~~~v~~-~----~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
||.||...+... . ...+..+.+...+.++-.++|..........++. ....+++++.|..-
T Consensus 153 vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~~~--~~~~la~~t~G~s~ 218 (256)
T d1lv7a_ 153 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFSG 218 (256)
T ss_dssp EEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCH
T ss_pred EEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCccc--CHHHHHHhCCCCCH
Confidence 555777654421 1 1346789999999999999998776544322211 12346677888653
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.69 E-value=0.0017 Score=71.86 Aligned_cols=179 Identities=13% Similarity=0.073 Sum_probs=93.0
Q ss_pred ccchhhHHHHHHHHHhcc-----------------CCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCC
Q 000202 979 AVNYTQRNVRKIFRYVND-----------------VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYW 1041 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~-----------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 1041 (1866)
.+.|.++.++++.+++.. ...+.+.++|++|+||||+|+.+++... -...++..+...
T Consensus 15 dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~-----~~~~~~~~~~~~ 89 (253)
T d1sxja2 15 QVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-----YDILEQNASDVR 89 (253)
T ss_dssp GCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEECTTSCC
T ss_pred HhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHH-----hhhhccccccch
Confidence 455666777777776621 2345788999999999999999965321 123455555444
Q ss_pred CHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCcc-----chhhhcCCCCCCCCCcEEEEccC--
Q 000202 1042 NTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQI-----DLEAVGIPVPGSENGSKIFMASR-- 1114 (1866)
Q Consensus 1042 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-----~~~~l~~~l~~~~~gs~IivTTR-- 1114 (1866)
+...+-. ..+............. .........++..++++|++.... .+..+...... ....|++|+.
T Consensus 90 ~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~vi~ide~~~~~~~~~~~~~~~~~~~~~--~~~~ii~i~~~~ 164 (253)
T d1sxja2 90 SKTLLNA-GVKNALDNMSVVGYFK--HNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 164 (253)
T ss_dssp CHHHHHH-TGGGGTTBCCSTTTTT--C----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred hhHHHHH-HHHHHhhcchhhhhhh--hhhhcccccccceEEEeeeccccccchhhhhHHHhhhhcc--cccccccccccc
Confidence 4433322 2222211111000000 000111235677889999986421 12222211111 1123444432
Q ss_pred Chhh-hccCCCCcEEEecCCChHHHHHHHHHHhc--CCCCCchHHHHHHHHHHHcCCCh
Q 000202 1115 ELDV-CRNMDVNMVVKLETLSMKDAWELFCKEVG--GIIQSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1115 ~~~v-~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~--~~~~~~~~~~~~~~I~~~c~GlP 1170 (1866)
.... .........+++.+++.++-...+...+. +..-++ +....|++.++|..
T Consensus 165 ~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~---~~l~~i~~~s~GDi 220 (253)
T d1sxja2 165 NLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDI 220 (253)
T ss_dssp TSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCH
T ss_pred cccccccccceeeeeeccccchhHHHHHHHHHHHHhCCCCCH---HHHHHHHHhCCCcH
Confidence 2222 22223346899999999998888876552 222222 23567888999976
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.56 E-value=0.021 Score=61.98 Aligned_cols=169 Identities=13% Similarity=0.102 Sum_probs=88.2
Q ss_pred cccchhhHHHHHHHHHhc-----cCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHH
Q 000202 978 TAVNYTQRNVRKIFRYVN-----DVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLR 1052 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 1052 (1866)
..++|.++-++++..++. ....+-+-++|++|+||||+|+.+.+. .. ++ ...++.+.......+.. ++.
T Consensus 9 ~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~--~~--~~-~~~~~~~~~~~~~~~~~-~~~ 82 (238)
T d1in4a2 9 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE--LQ--TN-IHVTSGPVLVKQGDMAA-ILT 82 (238)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH--HT--CC-EEEEETTTCCSHHHHHH-HHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhc--cC--CC-cccccCcccccHHHHHH-HHH
Confidence 345666666666666652 223445779999999999999999542 11 12 22333333322222211 111
Q ss_pred HhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCccc------hhhhcC--------------CCCCCCCCcEEEEc
Q 000202 1053 QLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQID------LEAVGI--------------PVPGSENGSKIFMA 1112 (1866)
Q Consensus 1053 ~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~------~~~l~~--------------~l~~~~~gs~IivT 1112 (1866)
. .+++..+++|.+..... ...+.. ......+...+|.+
T Consensus 83 ~----------------------~~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~a 140 (238)
T d1in4a2 83 S----------------------LERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGA 140 (238)
T ss_dssp H----------------------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEE
T ss_pred h----------------------hccCCchHHHHHHHhhhHHHhhcccceeeeeeeeeecCcccccccccCCCCeEEEEe
Confidence 1 23445556665543110 000000 00001123455555
Q ss_pred cCChh-h--hccCCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 000202 1113 SRELD-V--CRNMDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIV 1175 (1866)
Q Consensus 1113 TR~~~-v--~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~ 1175 (1866)
|.... + +........+.++..+.++...++...+...... ..++....|++.++|.+-.+..
T Consensus 141 t~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~~i~~~s~gd~R~ai~ 205 (238)
T d1in4a2 141 TTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE-IEDAAAEMIAKRSRGTPRIAIR 205 (238)
T ss_dssp ESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC-BCHHHHHHHHHTSTTCHHHHHH
T ss_pred cCCCccccccceeeeeEEEEecCCCHHHHHHHHHHhhhhccch-hhHHHHHHHHHhCCCCHHHHHH
Confidence 55443 3 1223344678999999999999998766433221 1234577788999998765543
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=96.52 E-value=0.0032 Score=73.07 Aligned_cols=152 Identities=13% Similarity=0.102 Sum_probs=81.8
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHh----cCcccccccceEEEE-EecCCCCHHHHHHHHHHH
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALI----SYPEVKVMFHVIIWV-TVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~----~~~~~~~~F~~~~wv-~vs~~~~~~~~~~~i~~~ 1053 (1866)
..+||++++.+++..|....-.-+.++|.+|||||+++..++ +..-...-.+.++|. +++. ++
T Consensus 23 ~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~------l~------ 90 (387)
T d1qvra2 23 PVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS------LL------ 90 (387)
T ss_dssp CCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------------
T ss_pred CCcCcHHHHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhh------hh------
Confidence 457899999999999965444446788999999999876553 222222233455554 3332 10
Q ss_pred hccCCCCccCHHHHHHHHHHHh-CC-CcEEEEEeCCCCcc---------ch-hhhcCCCCCCCCCcEEEEccCChhhhcc
Q 000202 1054 LSLHCKDRETDAQVAEKLWQVL-NG-EKFLLLLDDVWEQI---------DL-EAVGIPVPGSENGSKIFMASRELDVCRN 1121 (1866)
Q Consensus 1054 l~~~~~~~~~~~~~~~~l~~~L-~~-kr~LlVlDdv~~~~---------~~-~~l~~~l~~~~~gs~IivTTR~~~v~~~ 1121 (1866)
....-....++....+...+ .. .+++|++|++.... +. +.++++|.. + .-++|.+|..+.....
T Consensus 91 --ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~r-g-~~~~I~~tT~~ey~~~ 166 (387)
T d1qvra2 91 --AGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-G-ELRLIGATTLDEYREI 166 (387)
T ss_dssp ---------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT-T-CCCEEEEECHHHHHHH
T ss_pred --cccCcchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhC-C-CcceeeecCHHHHHHh
Confidence 11111223333444444444 33 47999999997531 11 112222211 1 2356666555444221
Q ss_pred ------CCCCcEEEecCCChHHHHHHHHHHh
Q 000202 1122 ------MDVNMVVKLETLSMKDAWELFCKEV 1146 (1866)
Q Consensus 1122 ------~~~~~~~~l~~L~~~~a~~Lf~~~~ 1146 (1866)
..-...+.|++.+.+++..++....
T Consensus 167 e~d~al~rrF~~v~v~ep~~~~~~~il~~~~ 197 (387)
T d1qvra2 167 EKDPALERRFQPVYVDEPTVEETISILRGLK 197 (387)
T ss_dssp TTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred cccHHHHHhcccccCCCCcHHHHHHHHHHHH
Confidence 1123578999999999999987544
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.49 E-value=0.0094 Score=65.54 Aligned_cols=150 Identities=10% Similarity=0.100 Sum_probs=82.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+-|-++|++|+|||++|+++.+.... ..+.++.+. +.... .......+...+...-..+
T Consensus 38 ~~giLL~GppGtGKT~l~~ala~~~~~-----~~~~i~~~~--------------l~~~~-~g~~~~~l~~~f~~A~~~~ 97 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE--------------IMSKL-AGESESNLRKAFEEAEKNA 97 (258)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHTTC-----EEEEECHHH--------------HTTSC-TTHHHHHHHHHHHHHHHTC
T ss_pred CceeEEecCCCCCchHHHHHHHHHhCC-----eEEEEEchh--------------hcccc-cccHHHHHHHHHHHHHhcC
Confidence 456889999999999999999552211 112222111 11111 1111222222233334568
Q ss_pred cEEEEEeCCCCcc---------ch----hhhcCC--CCCCCCCcEEEEccCChhhhc----cC-CCCcEEEecCCChHHH
Q 000202 1079 KFLLLLDDVWEQI---------DL----EAVGIP--VPGSENGSKIFMASRELDVCR----NM-DVNMVVKLETLSMKDA 1138 (1866)
Q Consensus 1079 r~LlVlDdv~~~~---------~~----~~l~~~--l~~~~~gs~IivTTR~~~v~~----~~-~~~~~~~l~~L~~~~a 1138 (1866)
+++|++||++... .. ..+... ......+--||.||+..+-.. .. ..+..+.++..+.++-
T Consensus 98 p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R 177 (258)
T d1e32a2 98 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 177 (258)
T ss_dssp SEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHH
T ss_pred CeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeCCCccccchhhhhcccccceeECCCCCHHHH
Confidence 8999999997421 11 111110 112223445566887765422 11 3467899999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh
Q 000202 1139 WELFCKEVGGIIQSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1139 ~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 1170 (1866)
.++|..........++. + ...|++.+.|+-
T Consensus 178 ~~il~~~l~~~~~~~~~-~-~~~la~~t~G~s 207 (258)
T d1e32a2 178 LEILQIHTKNMKLADDV-D-LEQVANETHGHV 207 (258)
T ss_dssp HHHHHHTTTTSCBCTTC-C-HHHHHHHCTTCC
T ss_pred HHHhhhhccCccccccc-c-hhhhhhcccCCC
Confidence 99998776543322221 1 245788888864
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.32 E-value=0.0057 Score=64.12 Aligned_cols=130 Identities=8% Similarity=0.031 Sum_probs=76.9
Q ss_pred hHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc---cceEEEEeeccccccccHHHHHHHHHHHHhccc
Q 000202 194 RIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF---EGSYFACNVRAAEETGRLDDLRKELLSKLLNDR 270 (1866)
Q Consensus 194 ~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f---~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~ 270 (1866)
.++.+..++..+ ....+.++|.+|+||||+|..+.+.+...+ +...++...+. .-.... .+++...+....
T Consensus 2 ~~~~l~~~i~~~--~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~---~I~Id~-IR~i~~~~~~~~ 75 (198)
T d2gnoa2 2 QLETLKRIIEKS--EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE---NIGIDD-IRTIKDFLNYSP 75 (198)
T ss_dssp HHHHHHHHHHTC--SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS---CBCHHH-HHHHHHHHTSCC
T ss_pred HHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcC---CCCHHH-HHHHHHHHhhCc
Confidence 456677777644 467889999999999999999998654332 23334321110 001122 223333322111
Q ss_pred cccCccchhHHHHHHHhhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccccc-hhccC-ccceeeecCCC
Q 000202 271 NVKNFQNISVNFQSKRLARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDKQ-VLTNC-EVDHIYQMKEL 345 (1866)
Q Consensus 271 ~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L 345 (1866)
..+++=++|+|+++ +.+...+|+..+....+++.+|+||.+.. +.... .....+.+.+.
T Consensus 76 ----------------~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC~~i~~~~p 138 (198)
T d2gnoa2 76 ----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVP 138 (198)
T ss_dssp ----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred ----------------ccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcceEEEeCCCc
Confidence 13455588999998 56777888887776677888888777654 32221 12345566543
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.29 E-value=0.033 Score=60.28 Aligned_cols=49 Identities=12% Similarity=-0.026 Sum_probs=34.9
Q ss_pred CcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHH
Q 000202 1125 NMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTI 1174 (1866)
Q Consensus 1125 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~ 1174 (1866)
...+.+...+.++..+...+.+......- ..+....|++.+.|.+-.+.
T Consensus 157 ~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~~~l~~ia~~s~gd~R~a~ 205 (239)
T d1ixsb2 157 GIVEHLEYYTPEELAQGVMRDARLLGVRI-TEEAALEIGRRSRGTMRVAK 205 (239)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHGGGCCCB-CHHHHHHHHHHTTSSHHHHH
T ss_pred ceeeEeeccChhhhhHHHHHHHHHhCCcc-chHHHHHHHHHcCCCHHHHH
Confidence 46788999999999888887665332211 24467789999999875544
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.04 E-value=0.0042 Score=67.72 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCchHHHHHHHHhc
Q 000202 998 TASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
..+-|-++|++|+|||++|+++++
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHhh
Confidence 345588999999999999999965
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.64 E-value=0.027 Score=61.93 Aligned_cols=152 Identities=15% Similarity=0.155 Sum_probs=81.5
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
..+-|-++|.+|.|||+||+++++... ..+ +.++ ...+ .... .......+...+...-..
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~~------~~~-~~~~----~~~l--------~~~~-~~~~~~~l~~~f~~A~~~ 99 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANECQ------ANF-ISIK----GPEL--------LTMW-FGESEANVREIFDKARQA 99 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHTT------CEE-EEEC----HHHH--------HTSC-TTTHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHhC------CcE-EEEE----HHHh--------hhcc-ccchHHHHHHHHHHHHhc
Confidence 345688999999999999999954322 222 2222 1111 1111 111122233333334456
Q ss_pred CcEEEEEeCCCCc--------cc--------hhhhcCCCCC--CCCCcEEEEccCChhhh-cc----CCCCcEEEecCCC
Q 000202 1078 EKFLLLLDDVWEQ--------ID--------LEAVGIPVPG--SENGSKIFMASRELDVC-RN----MDVNMVVKLETLS 1134 (1866)
Q Consensus 1078 kr~LlVlDdv~~~--------~~--------~~~l~~~l~~--~~~gs~IivTTR~~~v~-~~----~~~~~~~~l~~L~ 1134 (1866)
.+++|+|||++.. .+ ...+...+.. ...+--||.||+..+-. .. -..+..+++...+
T Consensus 100 ~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~ 179 (265)
T d1r7ra3 100 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 179 (265)
T ss_dssp CSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCC
T ss_pred CCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchhCCHHHhCCCCccEEEEecchH
Confidence 7899999999731 11 1222222321 12344566777765532 11 1345789999999
Q ss_pred hHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1135 MKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1135 ~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
.++-.++|...........+. -..+|++++.|.--
T Consensus 180 ~~~R~~il~~~l~~~~~~~~~--~l~~la~~t~g~s~ 214 (265)
T d1r7ra3 180 EKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGFSG 214 (265)
T ss_dssp CHHHHHHHHHHTTCC----CC--CCHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHhccCCchhhh--hHHHHHhcCCCCCH
Confidence 999999998776543221110 12446677777653
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.33 E-value=0.0049 Score=63.73 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=25.9
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhcccc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFE 238 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (1866)
-.+|.|+|++|+||||+|++++.++...|-
T Consensus 6 g~~I~l~G~~GsGKTTia~~La~~L~~~~~ 35 (183)
T d1m8pa3 6 GFTIFLTGYMNSGKDAIARALQVTLNQQGG 35 (183)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 468899999999999999999998866553
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.30 E-value=0.0059 Score=62.29 Aligned_cols=87 Identities=11% Similarity=0.007 Sum_probs=46.5
Q ss_pred CCcccEEEccCCcCCcccC----hhHHhcCCCCcEEEccCCCCC-----CCChhhcCCCCCcEEecccccCccc----CC
Q 000202 1396 CPNLLTLFLQRNCRLRVIP----PSFFELMTSLKVLNLSKTRIK-----SLPETLVNLKCLQILILRDCDFLFV----LP 1462 (1866)
Q Consensus 1396 ~~~L~~L~L~~~~~l~~~p----~~~~~~l~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~----lP 1462 (1866)
.++|+.|+|+++..+..-. ...+...++|++|+|++|.+. .+...+...+.|+.|+|++|.+... +-
T Consensus 14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~ 93 (167)
T d1pgva_ 14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 93 (167)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence 3556666666432222100 111244566777777777664 2334455566677777777764322 12
Q ss_pred ccccCCCCCcEEEccCCCCC
Q 000202 1463 PEVGSLECLEVLDLRGTEIK 1482 (1866)
Q Consensus 1463 ~~i~~L~~L~~L~l~~~~i~ 1482 (1866)
..+..-+.|++|++++|.+.
T Consensus 94 ~aL~~n~sL~~L~l~~n~~~ 113 (167)
T d1pgva_ 94 RSTLVTQSIVEFKADNQRQS 113 (167)
T ss_dssp HHTTTTCCCSEEECCCCSSC
T ss_pred HHHHhCCcCCEEECCCCcCC
Confidence 23444556777777666544
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.14 E-value=0.0044 Score=64.54 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=23.4
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
++.|+|.|++|+||||||++++++..
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999998753
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.13 E-value=0.0085 Score=63.65 Aligned_cols=99 Identities=18% Similarity=0.124 Sum_probs=60.8
Q ss_pred EEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHHHHHHHHHHhhhhhhhccCeEEEEEEccCCCC
Q 000202 712 LPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSEIRRAENMADLSERLLVVLDDVCDID 791 (1866)
Q Consensus 712 i~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~r~LlVlddv~~~~ 791 (1866)
+=|+|+.|.|||-|++.+++...- .....+++ +..++...+...+..............--+|++||+-...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~iDDi~~i~ 110 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKK--RGYRVIYS------SADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLS 110 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHH--TTCCEEEE------EHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGT
T ss_pred EEEECCCCCcHHHHHHHHHHHhcc--CccceEEe------chHHHHHHHHHHHHccchhhHHHHHhhccchhhhhhhhhc
Confidence 559999999999999999976432 22334444 4455666655554332222222233455689999996432
Q ss_pred -hHHHHH-HHHhcccCCCCCcEEEEecCC
Q 000202 792 -DEELHN-FRLLISNMRDSGSCFLVTTHS 818 (1866)
Q Consensus 792 -~~~w~~-~~~~l~~~~~~gs~iivttr~ 818 (1866)
...|.. +...+.....+|..||+|++.
T Consensus 111 ~~~~~~~~lf~lin~~~~~~~~iiits~~ 139 (213)
T d1l8qa2 111 GKERTQIEFFHIFNTLYLLEKQIILASDR 139 (213)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CchHHHHHHHHHHHHHhhccceEEEecCC
Confidence 245554 444443334568899999874
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.12 E-value=0.011 Score=61.87 Aligned_cols=38 Identities=29% Similarity=0.330 Sum_probs=29.8
Q ss_pred CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEE
Q 000202 205 GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYF 242 (1866)
Q Consensus 205 ~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 242 (1866)
...+..+|||.|.+|+||||||+++.............
T Consensus 18 ~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~ 55 (198)
T d1rz3a_ 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55 (198)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhcccccccee
Confidence 44567789999999999999999999876665444433
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.96 E-value=0.0043 Score=63.07 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.0
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
+.|.|.|++|+||||+|+.++.++.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588889999999999999999763
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.60 E-value=0.027 Score=63.62 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=36.2
Q ss_pred CCceeehhhHHHHHHhhh-------cCCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 186 KDLIGVEWRIKEIESLLR-------TGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~-------~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
...+|-+..++.+...+. .......++..+|++|+|||.||+.++..+.
T Consensus 22 ~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 22 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhcc
Confidence 357888888877765552 1222355788999999999999999998653
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=94.54 E-value=0.023 Score=61.62 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=36.3
Q ss_pred CceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHH
Q 000202 187 DLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFN 231 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~ 231 (1866)
.|||....++++.+.+..-+..-..|.|+|..|+|||++|+.+.+
T Consensus 1 ~~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~ 45 (247)
T d1ny5a2 1 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHK 45 (247)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHH
Confidence 488988888888887765333334589999999999999999976
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.54 E-value=0.0079 Score=61.62 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.7
Q ss_pred EEEEEEecCCCchhHHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
++|.|.|++|+||||+|++++.++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999998764
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.52 E-value=0.012 Score=60.05 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=25.1
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
+.+++|+|..|+|||||+.++.++...+.
T Consensus 2 ~Pvi~itG~~GSGKTTL~~~L~~~l~~~g 30 (170)
T d1np6a_ 2 IPLLAFAAWSGTGKTTLLKKLIPALCARG 30 (170)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 35899999999999999999999766553
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=94.51 E-value=0.032 Score=62.78 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=33.1
Q ss_pred CceeehhhHHHHHHhhh-------cCCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 187 DLIGVEWRIKEIESLLR-------TGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~-------~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.++|.+..++.+...+. .......++..+|+.|+|||.+|+.+++.+.
T Consensus 24 ~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 24 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhc
Confidence 45666666665544332 1122244778999999999999999999763
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.47 E-value=0.0075 Score=63.19 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=28.4
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEE
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 243 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (1866)
..+|.++|++|+||||+|++++.+....+....++
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~ 53 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 53 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccch
Confidence 45788999999999999999999877666555444
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.36 E-value=0.0096 Score=59.50 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.3
Q ss_pred EEEEEEecCCCchhHHHHHHHHh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
++|.|.|++|+||||||+++..+
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999988664
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.33 E-value=0.0098 Score=61.59 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=24.1
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
+.|.|+|.+|+|||||+++++..+....
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~ 29 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 4689999999999999999999776543
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.30 E-value=0.029 Score=62.07 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=25.4
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
..+.|.++|++|+||||||++++......|
T Consensus 31 ~P~~ilL~GpPGtGKT~la~~la~~~~~~~ 60 (273)
T d1gvnb_ 31 SPTAFLLGGQPGSGKTSLRSAIFEETQGNV 60 (273)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhcce
Confidence 467789999999999999999999775443
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=94.24 E-value=0.0089 Score=61.13 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.|.|.|++|+||||+|+.++.++
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999999876
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.24 E-value=0.046 Score=55.60 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=22.4
Q ss_pred CCcEEEEEEecCCCchhHHHHHHHHh
Q 000202 207 AGVYKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 207 ~~~~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
+...+|.++|++|+||||+|++++..
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999999988654
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.14 E-value=0.01 Score=60.30 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=20.9
Q ss_pred EEEEecCCCchhHHHHHHHHhhhcc
Q 000202 212 LGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 212 i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
|.+.||+|+||||+|+.++.+..-.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~~~ 28 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALGVG 28 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4456999999999999999987544
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.04 E-value=0.011 Score=59.80 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.8
Q ss_pred EEEEecCCCchhHHHHHHHHhhh
Q 000202 212 LGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 212 i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
|.|.||+|+||||+|+.++.++.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67889999999999999999873
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.02 E-value=0.077 Score=55.87 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=23.8
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
+.+|.++|.+|+||||+|+++++.....
T Consensus 2 p~li~l~GlpgsGKSTla~~L~~~l~~~ 29 (213)
T d1bifa1 2 PTLIVMVGLPARGKTYISKKLTRYLNFI 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3578999999999999999999866543
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.88 E-value=0.013 Score=60.15 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=23.3
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.++|.|.|.+|+||||+|+++++++.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.08 Score=55.04 Aligned_cols=40 Identities=20% Similarity=0.347 Sum_probs=29.7
Q ss_pred CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEee
Q 000202 206 SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNV 246 (1866)
Q Consensus 206 ~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~ 246 (1866)
.....+|.++|+.|+||||.+..++.+++.+ ...+.+...
T Consensus 6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~-g~kV~lit~ 45 (211)
T d2qy9a2 6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLAAG 45 (211)
T ss_dssp SCTTEEEEEECCTTSCHHHHHHHHHHHHHTT-TCCEEEECC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEec
Confidence 3457899999999999999999998876643 334444433
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=93.77 E-value=0.017 Score=58.91 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.8
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
+.+++.|.|++|+||||+|+.++.+.
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999999876
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.63 E-value=0.02 Score=59.18 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=24.8
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
++|+|.|++|+||||+++.++.++....
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999876554
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.52 E-value=0.013 Score=59.82 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.6
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhc
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
.|.+.|++|+||||+|+.++++..-
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg~ 28 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALGY 28 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678899999999999999987643
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.46 E-value=0.078 Score=57.35 Aligned_cols=51 Identities=31% Similarity=0.530 Sum_probs=32.7
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhccc-cceEEEEeeccccccccHHHHHHHHHH
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISRHF-EGSYFACNVRAAEETGRLDDLRKELLS 264 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ll~ 264 (1866)
.++|.|-+|+|||+|+..+++.....- +.++|+ ..++ ......++.+++..
T Consensus 70 r~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~-~iGe--r~~ev~~~~~~~~~ 121 (276)
T d2jdid3 70 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGE--RTREGNDLYHEMIE 121 (276)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEE-EESC--CHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEEE-Eecc--ChHHHHHHHHHHHh
Confidence 589999999999999999998644332 344554 3443 22223445555544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=93.40 E-value=0.04 Score=55.72 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=33.4
Q ss_pred hcCCCCcEEEccCC-CCC-----CCChhhcCCCCCcEEecccccCccc----CCccccCCCCCcEEEccCCCCC
Q 000202 1419 ELMTSLKVLNLSKT-RIK-----SLPETLVNLKCLQILILRDCDFLFV----LPPEVGSLECLEVLDLRGTEIK 1482 (1866)
Q Consensus 1419 ~~l~~L~~L~Ls~~-~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~----lP~~i~~L~~L~~L~l~~~~i~ 1482 (1866)
.+.+.|++|+|+++ .++ .+-..+...++|+.|+|++|.+... +-..+...+.|+.|++++|.+.
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~ 87 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 87 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence 44566666666653 343 2233445556666666666653221 1123344556666666666554
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.39 E-value=0.024 Score=57.39 Aligned_cols=34 Identities=18% Similarity=-0.041 Sum_probs=27.2
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEE
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 243 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (1866)
++++|+|..|+|||||+.++..+++.+--.++-+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vi 35 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV 35 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 5899999999999999999999877654333333
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=93.33 E-value=0.02 Score=58.09 Aligned_cols=106 Identities=19% Similarity=0.120 Sum_probs=65.4
Q ss_pred CCCcccEEEccCCcCCcccC----hhHHhcCCCCcEEEccCCCCC-----CCChhhcCCCCCcEEecccccCccc----C
Q 000202 1395 SCPNLLTLFLQRNCRLRVIP----PSFFELMTSLKVLNLSKTRIK-----SLPETLVNLKCLQILILRDCDFLFV----L 1461 (1866)
Q Consensus 1395 ~~~~L~~L~L~~~~~l~~~p----~~~~~~l~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~----l 1461 (1866)
+.+.|+.|+|+++..++.-. ...+...++|+.|+|++|.+. .+-..+.....|+.|++++|.+... +
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l 94 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 94 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence 34677777777543332211 111246788999999999876 2335566778899999988875422 2
Q ss_pred CccccCCCCCcEEEcc--CCCCC-----cCChhhcCCCccceeccc
Q 000202 1462 PPEVGSLECLEVLDLR--GTEIK-----MLPKEIGKLTSLRYLTVF 1500 (1866)
Q Consensus 1462 P~~i~~L~~L~~L~l~--~~~i~-----~lp~~i~~L~~L~~L~l~ 1500 (1866)
-..+...++|+.++|+ +|.+. .+...+.+.++|++|++.
T Consensus 95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~ 140 (166)
T d1io0a_ 95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 140 (166)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCc
Confidence 3455667778776554 44554 234445566777777664
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.28 E-value=0.018 Score=58.93 Aligned_cols=25 Identities=40% Similarity=0.272 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
-++|.|.|++|+||||+|+++.++.
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999987754
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.26 E-value=0.064 Score=55.77 Aligned_cols=113 Identities=12% Similarity=0.041 Sum_probs=62.8
Q ss_pred HHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCccc--ccccceEEEEEec-CCCCHHHHHHHHHHHhccCCCCccC
Q 000202 987 VRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEV--KVMFHVIIWVTVS-RYWNTRKIQKQVLRQLSLHCKDRET 1063 (1866)
Q Consensus 987 ~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~--~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~~~ 1063 (1866)
++.+-+++.....+.+-++|.+|+||||+|..+.++-.. ..+-| ..++.-. ....+.++ +++.+.+....
T Consensus 3 ~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D-~~~i~~~~~~I~Id~I-R~i~~~~~~~~----- 75 (198)
T d2gnoa2 3 LETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP----- 75 (198)
T ss_dssp HHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC-----
T ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCC-EEEEeCCcCCCCHHHH-HHHHHHHhhCc-----
Confidence 334445555566778999999999999999988543211 11222 3333321 11123322 22333332211
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCChh
Q 000202 1064 DAQVAEKLWQVLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRELD 1117 (1866)
Q Consensus 1064 ~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~~ 1117 (1866)
..+++=++|+|++.. ...++++...+.....++.+|++|.+..
T Consensus 76 -----------~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~ 120 (198)
T d2gnoa2 76 -----------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWH 120 (198)
T ss_dssp -----------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGG
T ss_pred -----------ccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChh
Confidence 134555888999985 4556666555543345677777666543
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.00 E-value=0.029 Score=58.50 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=23.8
Q ss_pred CCcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 207 AGVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 207 ~~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
+.+.+|.|.|++|+||||+|+.++++.
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998764
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.95 E-value=0.17 Score=52.75 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=30.8
Q ss_pred cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 204 TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 204 ~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
.......+|.++|+.|+||||.+..++.++..+-..+..+.
T Consensus 6 ~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit 46 (213)
T d1vmaa2 6 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 46 (213)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEe
Confidence 34456789999999999999998888887655544455443
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=92.93 E-value=0.025 Score=57.74 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
...|.|.|++|+||||+|+.++++.
T Consensus 5 ~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999874
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.81 E-value=0.022 Score=59.99 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=25.9
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhcccc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFE 238 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (1866)
...+|-+.|++|.||||||++++.++...+.
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~l~~~~~ 53 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQLVRDRR 53 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 4568999999999999999999987754433
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.80 E-value=0.16 Score=52.66 Aligned_cols=36 Identities=19% Similarity=0.085 Sum_probs=27.9
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEE
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 243 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (1866)
+.++|.++|+.|+||||.+..++.+++.+-..+..+
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~li 44 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 44 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 467899999999999999999888766554444443
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.70 E-value=0.042 Score=56.92 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=24.4
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
++|.|.|++|+||||+|+.++.++....
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~~~ 29 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDNQG 29 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 5789999999999999999998876543
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.64 E-value=0.031 Score=58.43 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=24.3
Q ss_pred CCcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 207 AGVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 207 ~~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
+...+|.|.|++|+||||+|+.++.++
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998865
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=92.63 E-value=0.025 Score=57.45 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhc
Q 000202 999 ASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.+||+|+|..|+|||||++++.+
T Consensus 2 ~Pvi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 2 IPLLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999954
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.51 E-value=0.037 Score=56.08 Aligned_cols=83 Identities=22% Similarity=0.145 Sum_probs=53.4
Q ss_pred HhcCCCCcEEEccCC-CCC-----CCChhhcCCCCCcEEecccccCcc----cCCccccCCCCCcEEEccCCCCCc----
Q 000202 1418 FELMTSLKVLNLSKT-RIK-----SLPETLVNLKCLQILILRDCDFLF----VLPPEVGSLECLEVLDLRGTEIKM---- 1483 (1866)
Q Consensus 1418 ~~~l~~L~~L~Ls~~-~i~-----~lp~~i~~L~~L~~L~L~~~~~~~----~lP~~i~~L~~L~~L~l~~~~i~~---- 1483 (1866)
..+.+.|+.|+|+++ .+. .+-..+....+|++|+|++|.+.. .+...+...+.|++|+|++|.+..
T Consensus 11 ~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~ 90 (167)
T d1pgva_ 11 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 90 (167)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHH
Confidence 345688999999875 454 233456777889999999887542 222344556778888888887762
Q ss_pred -CChhhcCCCccceeccc
Q 000202 1484 -LPKEIGKLTSLRYLTVF 1500 (1866)
Q Consensus 1484 -lp~~i~~L~~L~~L~l~ 1500 (1866)
+-..+..-++|++|++.
T Consensus 91 ~l~~aL~~n~sL~~L~l~ 108 (167)
T d1pgva_ 91 RLLRSTLVTQSIVEFKAD 108 (167)
T ss_dssp HHHHHTTTTCCCSEEECC
T ss_pred HHHHHHHhCCcCCEEECC
Confidence 22234445556666553
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.49 E-value=0.026 Score=58.34 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHhc
Q 000202 999 ASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
++.|.|.|+.|+||||||+.+..
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999943
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=92.42 E-value=0.018 Score=58.14 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=19.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhc
Q 000202 1000 SKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
+.|.+.|++|+||||+|+.+..
T Consensus 3 k~I~l~G~~GsGKSTvak~La~ 24 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQ 24 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3588889999999999999943
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=92.24 E-value=0.035 Score=56.44 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=19.1
Q ss_pred cEEEEEcCCCchHHHHHHHHh
Q 000202 1000 SKIGVYGVGGIGKTAALKALI 1020 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~ 1020 (1866)
++|.|.|++|+||||+|+.+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~ 23 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLA 23 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999994
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.04 E-value=0.18 Score=54.49 Aligned_cols=84 Identities=17% Similarity=0.235 Sum_probs=57.4
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCC-----CccCHHHHHHHHH
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCK-----DRETDAQVAEKLW 1072 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 1072 (1866)
.-+++-|+|..|+||||+|.+++...+..+ ..++|++....++.+. +++++.+.. .....++..+.+.
T Consensus 59 ~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g--~~~vyIDtE~~~~~e~-----a~~~GvD~d~il~~~~~~~E~~~~~~~ 131 (269)
T d1mo6a1 59 RGRVIEIYGPESSGKTTVALHAVANAQAAG--GVAAFIDAEHALDPDY-----AKKLGVDTDSLLVSQPDTGEQALEIAD 131 (269)
T ss_dssp SSSEEEEECSSSSSHHHHHHHHHHHHHHTT--CEEEEEESSCCCCHHH-----HHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred cceeEEEecCCCcHHHHHHHHHHHHHhcCC--CEEEEEECCccCCHHH-----HHHhCCCHHHeEEecCCCHHHHHHHHH
Confidence 356899999999999999977754333222 3678999988888754 455665432 2345566666555
Q ss_pred HHhC-CCcEEEEEeCCC
Q 000202 1073 QVLN-GEKFLLLLDDVW 1088 (1866)
Q Consensus 1073 ~~L~-~kr~LlVlDdv~ 1088 (1866)
..++ ++.-|||+|.+-
T Consensus 132 ~l~~~~~~~liIiDSi~ 148 (269)
T d1mo6a1 132 MLIRSGALDIVVIDSVA 148 (269)
T ss_dssp HHHHTTCEEEEEEECST
T ss_pred HHHhcCCCCEEEEeccc
Confidence 5554 457899999984
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.03 E-value=0.24 Score=51.46 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=24.3
Q ss_pred CCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 207 AGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 207 ~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
....+|.++|+.|+||||.+..++.+++.+=..+.++.
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit 47 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVG 47 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEE
Confidence 45789999999999999998888886654323344443
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=91.92 E-value=0.041 Score=56.25 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=22.1
Q ss_pred EEEEecCCCchhHHHHHHHHhhhcc
Q 000202 212 LGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 212 i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
|+|+|.+|+|||||++.++..+...
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~ 27 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCC
Confidence 8999999999999999999866543
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.88 E-value=0.033 Score=57.05 Aligned_cols=22 Identities=32% Similarity=0.221 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHh
Q 000202 999 ASKIGVYGVGGIGKTAALKALI 1020 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~ 1020 (1866)
..+|.++|++|+||||+|+.+.
T Consensus 6 g~~I~l~G~~GsGKTTia~~La 27 (183)
T d1m8pa3 6 GFTIFLTGYMNSGKDAIARALQ 27 (183)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3578899999999999999994
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.87 E-value=0.033 Score=62.72 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=22.9
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
.+.+.++|++|+|||.||+++++....
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~~ 75 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLANA 75 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCCHHHHHHHHhhcccc
Confidence 356789999999999999999987543
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=91.75 E-value=0.035 Score=55.08 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=18.6
Q ss_pred cEEEEEcCCCchHHHHHHHHh
Q 000202 1000 SKIGVYGVGGIGKTAALKALI 1020 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~ 1020 (1866)
.+|.|.|++|+||||+|+.+.
T Consensus 3 klIii~G~pGsGKTTla~~L~ 23 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFI 23 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999873
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=91.65 E-value=0.062 Score=59.23 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=27.6
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
+.|+|+|-||+||||+|..++..+...-..+.-++
T Consensus 2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID 36 (269)
T d1cp2a_ 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 67999999999999999999997766533444444
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.52 E-value=0.095 Score=56.85 Aligned_cols=51 Identities=22% Similarity=0.152 Sum_probs=36.7
Q ss_pred HHHHHhhh-cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEee
Q 000202 196 KEIESLLR-TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNV 246 (1866)
Q Consensus 196 ~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~ 246 (1866)
..|...|. .+-+.-+++-|+|.+|+||||||.+++......=..++|++.-
T Consensus 40 ~~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE 91 (263)
T d1u94a1 40 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 91 (263)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 34555664 3323456899999999999999999998666554556777633
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.51 E-value=0.064 Score=57.97 Aligned_cols=48 Identities=15% Similarity=0.134 Sum_probs=38.0
Q ss_pred HHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 197 EIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 197 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
.|.+.|..+-+.-.++.|+|.+|+|||++|.+++.....+...++|+.
T Consensus 14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is 61 (242)
T d1tf7a2 14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFA 61 (242)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceee
Confidence 355556544344668999999999999999999998877777788876
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.48 E-value=0.062 Score=55.82 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=22.2
Q ss_pred hccCCccEEEEEcCCCchHHHHHHHHh
Q 000202 994 VNDVTASKIGVYGVGGIGKTAALKALI 1020 (1866)
Q Consensus 994 l~~~~~~vi~I~G~gGvGKTtLa~~v~ 1020 (1866)
+...+.-+|+|.|..|+||||||+.+.
T Consensus 17 ~~~~~~~iIgI~G~~GSGKSTla~~L~ 43 (198)
T d1rz3a_ 17 IKTAGRLVLGIDGLSRSGKTTLANQLS 43 (198)
T ss_dssp SCCSSSEEEEEEECTTSSHHHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 344445589999999999999999994
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.37 E-value=0.06 Score=58.65 Aligned_cols=50 Identities=12% Similarity=0.008 Sum_probs=32.6
Q ss_pred HHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc-cceEEEEeecc
Q 000202 198 IESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF-EGSYFACNVRA 248 (1866)
Q Consensus 198 l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~ 248 (1866)
+.+.|..=. .-+.++|.|..|+|||+|+..+.+....+. +.++++...++
T Consensus 33 ~ID~l~Pig-rGQr~~I~g~~g~GKT~l~~~i~~~~~~~~~~~v~~~~~ige 83 (289)
T d1xpua3 33 VLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE 83 (289)
T ss_dssp HHHHHSCCB-TTCEEEEEECSSSSHHHHHHHHHHHHHHHCTTSEEEEEEEEE
T ss_pred eeeeccccc-CCCeeeEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEeece
Confidence 444444322 234689999999999999999998665443 34444444443
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=91.32 E-value=0.14 Score=56.85 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=23.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
++.++|.+|+|||.||++++.++..++
T Consensus 125 ~~l~~G~pG~GKT~la~ala~~~~~~~ 151 (321)
T d1w44a_ 125 MVIVTGKGNSGKTPLVHALGEALGGKD 151 (321)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHHHTTS
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCC
Confidence 456789999999999999999876544
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=91.13 E-value=0.12 Score=57.94 Aligned_cols=47 Identities=19% Similarity=0.144 Sum_probs=34.1
Q ss_pred HHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 198 IESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 198 l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
+...+........+|||.|.+|+|||||..++.......-..++.+.
T Consensus 43 ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavla 89 (327)
T d2p67a1 43 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 89 (327)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeec
Confidence 33334444556889999999999999999999887666544444444
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=91.10 E-value=0.17 Score=53.94 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.7
Q ss_pred EEEEEEecCCCchhHHHHHHHHh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
..|+|+|..|.|||||++.+..-
T Consensus 30 e~vaIvG~sGsGKSTLl~ll~gl 52 (241)
T d2pmka1 30 EVIGIVGRSGSGKSTLTKLIQRF 52 (241)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999998763
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.07 E-value=0.049 Score=56.54 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHh
Q 000202 999 ASKIGVYGVGGIGKTAALKALI 1020 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~ 1020 (1866)
..+|.++|++|+||||+|+.+.
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La 40 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALE 40 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999999999994
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=91.05 E-value=0.35 Score=49.92 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=27.3
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEE
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 243 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (1866)
..++|.++|+.|+||||.+..++.+...+=..+.++
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~li 40 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFC 40 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 457899999999999999999888665443344443
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=91.01 E-value=0.12 Score=57.87 Aligned_cols=41 Identities=20% Similarity=0.379 Sum_probs=30.9
Q ss_pred HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 196 KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 196 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
.++.+.+........+|||.|.||+|||||..++...+...
T Consensus 38 ~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~~~~ 78 (323)
T d2qm8a1 38 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA 78 (323)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHHHHhhc
Confidence 34444444445568899999999999999999999865543
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=90.96 E-value=0.042 Score=55.80 Aligned_cols=21 Identities=38% Similarity=0.463 Sum_probs=18.5
Q ss_pred cEEEEEcCCCchHHHHHHHHh
Q 000202 1000 SKIGVYGVGGIGKTAALKALI 1020 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~ 1020 (1866)
..|.|.|++|+||||+|+.+.
T Consensus 5 ~~I~i~G~pGsGKTTia~~La 25 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELA 25 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 347799999999999999994
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.91 E-value=0.06 Score=56.92 Aligned_cols=27 Identities=15% Similarity=0.410 Sum_probs=23.6
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
+-+|||.|..|+||||+|+++.+.+..
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~~l~~ 28 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQLLGQ 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 458999999999999999999987644
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=90.87 E-value=0.06 Score=55.78 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
++++| |.|++|+||||+|+.++.+.
T Consensus 3 ~~rii-l~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 3 GVRAV-LLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCEEE-EECCTTSSHHHHHHHHHHHH
T ss_pred ccEEE-EECCCCCCHHHHHHHHHHHh
Confidence 56666 78999999999999998865
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.57 E-value=0.056 Score=54.51 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=20.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhc
Q 000202 1000 SKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
++|+|+|..|+|||||+.++..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999998854
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=90.56 E-value=0.23 Score=53.71 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=57.8
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCC-----CccCHHHHHHHHH
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCK-----DRETDAQVAEKLW 1072 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 1072 (1866)
.-+++-|+|..|.||||||.++....+-.+ ..++|++....++.. +++.++.+.. ...+.++..+.+.
T Consensus 56 ~g~itei~G~~~sGKT~l~l~~~~~aqk~g--~~v~yiDtE~~~~~~-----~a~~~Gvd~d~i~~~~~~~~E~~~~~~~ 128 (268)
T d1xp8a1 56 RGRITEIYGPESGGKTTLALAIVAQAQKAG--GTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 128 (268)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CceEEEEecCCccchHHHHHHHHHHHHhCC--CEEEEEECCccCCHH-----HHHHhCCCchhEEEEcCCCHHHHHHHHH
Confidence 346899999999999999988854322222 357899988888874 5667766532 2345566666665
Q ss_pred HHhCC-CcEEEEEeCCC
Q 000202 1073 QVLNG-EKFLLLLDDVW 1088 (1866)
Q Consensus 1073 ~~L~~-kr~LlVlDdv~ 1088 (1866)
..++. ..-|||+|-+-
T Consensus 129 ~l~~~~~~~liIiDSi~ 145 (268)
T d1xp8a1 129 LLVRSGAIDVVVVDSVA 145 (268)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCcEEEEeccc
Confidence 55543 45688899874
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=90.52 E-value=0.12 Score=57.17 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=31.9
Q ss_pred hHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 194 RIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 194 ~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
++..+.+.+.. .+.++|.+.|-||+||||+|..++...+..
T Consensus 7 ~~~~~~~~~~~--~~~~iii~sGKGGVGKTT~a~nLA~~lA~~ 47 (279)
T d1ihua2 7 SLSALVDDIAR--NEHGLIMLMGKGGVGKTTMAAAIAVRLADM 47 (279)
T ss_dssp CHHHHHHHHHT--TSCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhhc--CCCEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 45566666663 468899999999999999999888765544
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.49 E-value=0.051 Score=56.33 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
.|+|.|++|+||||||++++.+....|
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~~~~ 28 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHSSIF 28 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTTTE
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCce
Confidence 478999999999999999988765544
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.46 E-value=0.18 Score=54.61 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=54.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCC-----CccCHHHHHHHHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCK-----DRETDAQVAEKLWQ 1073 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 1073 (1866)
-+++-|+|.+|+||||||-++.....-.+ ..++|++....++.. .++.++.+.. ...+.++..+.+..
T Consensus 54 g~itei~G~~gsGKTtl~l~~~~~~q~~g--~~~vyidtE~~~~~~-----~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~ 126 (263)
T d1u94a1 54 GRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 126 (263)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCC--CEEEEEccccccCHH-----HHHHhCCCHHHEEEecCCCHHHHHHHHHH
Confidence 46899999999999999988854333222 357899988888764 3555665422 23345555555555
Q ss_pred HhC-CCcEEEEEeCCC
Q 000202 1074 VLN-GEKFLLLLDDVW 1088 (1866)
Q Consensus 1074 ~L~-~kr~LlVlDdv~ 1088 (1866)
..+ +..-|||+|-+-
T Consensus 127 l~~~~~~~liViDSi~ 142 (263)
T d1u94a1 127 LARSGAVDVIVVDSVA 142 (263)
T ss_dssp HHHHTCCSEEEEECGG
T ss_pred HHhcCCCCEEEEECcc
Confidence 443 344588888873
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.42 E-value=0.046 Score=56.14 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhc
Q 000202 1000 SKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
+.|.|+|.+|+|||||++++..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 4588999999999999999954
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.37 E-value=0.043 Score=55.45 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=17.1
Q ss_pred EEEEcCCCchHHHHHHHHhc
Q 000202 1002 IGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1002 i~I~G~gGvGKTtLa~~v~~ 1021 (1866)
|.++||+|+||||+++.++.
T Consensus 4 IvliG~~G~GKSTig~~La~ 23 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAK 23 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45669999999999999943
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=90.34 E-value=0.066 Score=54.33 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.3
Q ss_pred CccEEEEEcCCCchHHHHHHHHhc
Q 000202 998 TASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
....|.|.|++|+||||+|+.+..
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 345688999999999999999943
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.28 E-value=0.053 Score=55.97 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=24.5
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhcccc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFE 238 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (1866)
|.|.|+|++|+|||||++.++.+....|.
T Consensus 2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~~ 30 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCccee
Confidence 45889999999999999999887665554
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=90.18 E-value=0.18 Score=52.20 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=38.2
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecC-CCCHHHHHHHHHHHhccC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSR-YWNTRKIQKQVLRQLSLH 1057 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~ 1057 (1866)
+.++|.++|+.|+||||.+-.+..+.... . ..+..++... .....+-++..++.++..
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~-g-~kV~lit~Dt~R~gA~eQL~~~a~~l~i~ 63 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-G-KKVMFCAGDTFRAAGGTQLSEWGKRLSIP 63 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-T-CCEEEECCCCSSTTHHHHHHHHHHHHTCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC-C-CcEEEEEeccccccchhhHhhcccccCce
Confidence 45789999999999988877665433322 2 3455665543 345566677777777654
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.15 E-value=0.067 Score=55.58 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.7
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhc
Q 000202 997 VTASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 997 ~~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
....+|.|+|++|+||||+|+.+..
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999999954
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.14 E-value=0.25 Score=53.35 Aligned_cols=52 Identities=19% Similarity=0.110 Sum_probs=37.4
Q ss_pred HHHHHhhh-cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeec
Q 000202 196 KEIESLLR-TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVR 247 (1866)
Q Consensus 196 ~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~ 247 (1866)
..|...|. .+-+.-+++-|+|.+|+||||||.+++......-..++|++.-.
T Consensus 46 ~~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~ 98 (269)
T d1mo6a1 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH 98 (269)
T ss_dssp HHHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred HHHHHhhccCCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence 34555664 44455778999999999999999988875555445577876433
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=90.11 E-value=0.064 Score=55.50 Aligned_cols=24 Identities=29% Similarity=0.220 Sum_probs=21.1
Q ss_pred EEEEEEecCCCchhHHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
-.|.|.|++|+||||+|+.+++++
T Consensus 4 m~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999998865
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=90.00 E-value=0.066 Score=56.97 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=22.3
Q ss_pred EEEEEEecCCCchhHHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.+|+|.|++|+||||+|+.+++++
T Consensus 4 piI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999876
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.93 E-value=0.075 Score=55.14 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.8
Q ss_pred EEEEEEecCCCchhHHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.+|.|.|++|+||||+|+.++++.
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999865
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=89.91 E-value=0.047 Score=54.87 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=17.7
Q ss_pred EEEEcCCCchHHHHHHHHhc
Q 000202 1002 IGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1002 i~I~G~gGvGKTtLa~~v~~ 1021 (1866)
|.++||+|+||||+|+.++.
T Consensus 3 I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67889999999999999943
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=89.90 E-value=0.088 Score=60.13 Aligned_cols=49 Identities=16% Similarity=0.040 Sum_probs=34.4
Q ss_pred ceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 188 LIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 188 ~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
+.|.+..+.+..+.+..+.+..+.+.++|++|+|||++|..+++.....
T Consensus 133 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~ 181 (362)
T d1svma_ 133 LPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGK 181 (362)
T ss_dssp STTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred ccchHHHHHHHHHHHHhCCCCcCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4455555444333333455567789999999999999999999976544
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.82 E-value=0.068 Score=54.79 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=20.1
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 000202 212 LGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 212 i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
|.|.|++|+||||+|+.++.+.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7799999999999999998865
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=89.75 E-value=0.15 Score=56.27 Aligned_cols=42 Identities=29% Similarity=0.293 Sum_probs=31.3
Q ss_pred HHHHHhhhcCC-CCcEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 196 KEIESLLRTGS-AGVYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 196 ~~l~~~L~~~~-~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
.....+|.... ..+-+|||.|..|+||||+|+.+...+...+
T Consensus 66 ~~~~~fl~~~~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~ 108 (308)
T d1sq5a_ 66 AVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP 108 (308)
T ss_dssp HHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST
T ss_pred HHHHHHhcccCCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhc
Confidence 33445555433 3477899999999999999999998776554
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=89.68 E-value=0.07 Score=55.16 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.|.|.|++|+||||+|+.++.++
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999864
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=89.58 E-value=0.17 Score=52.41 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=36.0
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCH--HHHHHHHHHHhccCC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNT--RKIQKQVLRQLSLHC 1058 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~ 1058 (1866)
...||.++|+.|+||||-+..+..... +. ...+.+.....+.. .+-++..++.++...
T Consensus 8 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~~--g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~ 67 (211)
T d2qy9a2 8 APFVILMVGVNGVGKTTTIGKLARQFE-QQ--GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPV 67 (211)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHHHH-TT--TCCEEEECCCTTCHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HC--CCcEEEEecccccccchhhhhhhhhhcCCcc
Confidence 356899999999999887766643322 12 23344444444544 445666777776543
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.56 E-value=0.28 Score=51.19 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=26.1
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEE
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYF 242 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 242 (1866)
..|+|-|+-|+||||+|+.+++.+...--.+.+
T Consensus 4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~ 36 (209)
T d1nn5a_ 4 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL 36 (209)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 478999999999999999999977654333333
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.53 E-value=1.1 Score=48.57 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.8
Q ss_pred EEEEEEecCCCchhHHHHHHHHh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
.+++|+|..|.|||||++.++-.
T Consensus 63 e~vaivG~nGsGKSTLl~~i~Gl 85 (281)
T d1r0wa_ 63 EMLAITGSTGSGKTSLLMLILGE 85 (281)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 47999999999999999999863
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.52 E-value=0.073 Score=54.66 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhc
Q 000202 1000 SKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
++|+|.|+.|+||||+++.+..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999843
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=89.48 E-value=0.17 Score=54.30 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=19.8
Q ss_pred EEEEEEecCCCchhHHHHHHHH
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFN 231 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~ 231 (1866)
..++|+|..|.|||||++.+..
T Consensus 45 e~vaivG~sGsGKSTLl~ll~g 66 (255)
T d2hyda1 45 ETVAFVGMSGGGKSTLINLIPR 66 (255)
T ss_dssp CEEEEECSTTSSHHHHHTTTTT
T ss_pred CEEEEECCCCCcHHHHHHHHHh
Confidence 4799999999999999998765
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=89.42 E-value=0.078 Score=53.84 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhc
Q 000202 999 ASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.++|.|.|..|+||||+|+.+..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~ 25 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999944
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.40 E-value=0.079 Score=54.07 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=25.6
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccce
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGS 240 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~ 240 (1866)
+.|.|+|++|+|||||++++..+....|..+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~ 34 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYP 34 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCcCeeec
Confidence 5799999999999999999988766666433
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=89.21 E-value=0.089 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhc
Q 000202 999 ASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.++|.|.|+.|+||||+|+.+..
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~ 26 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALAN 26 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999943
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.16 E-value=0.14 Score=55.89 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=27.0
Q ss_pred CCCCcEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 205 GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 205 ~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
.....-+|||.|..|+||||||..+...+...+
T Consensus 23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~ 55 (286)
T d1odfa_ 23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKY 55 (286)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHh
Confidence 344467899999999999999999988766554
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=89.11 E-value=0.068 Score=54.18 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=18.1
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 000202 1001 KIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1001 vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.|.++|++|+||||+|+.++.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 366889999999999999943
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.07 E-value=0.35 Score=52.10 Aligned_cols=89 Identities=19% Similarity=0.354 Sum_probs=54.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC-CCHHHHHHHHHHHhccC-------------CCCccCH-
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY-WNTRKIQKQVLRQLSLH-------------CKDRETD- 1064 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------------~~~~~~~- 1064 (1866)
+.++|.|..|+|||+|+..+.+.. .+.+=+.++++-+.+. ..+.++.+++.+.-... ..+....
T Consensus 69 Qr~~If~~~g~GKt~l~~~i~~~~-~~~~~~v~V~~~iGer~~ev~~~~~~~~~~~~~~~~~~~~~tvvv~~~s~~~~~~ 147 (276)
T d2jdid3 69 GKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGA 147 (276)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHH
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHH-HhhCCCeEEEEEeccChHHHHHHHHHHHhcCccccccccceEEEEEECCCCCHHH
Confidence 459999999999999998885432 1222346678877754 45667777776532111 0011111
Q ss_pred ----HHHHHHHHHHh---CCCcEEEEEeCCCC
Q 000202 1065 ----AQVAEKLWQVL---NGEKFLLLLDDVWE 1089 (1866)
Q Consensus 1065 ----~~~~~~l~~~L---~~kr~LlVlDdv~~ 1089 (1866)
....-.+.+++ +++.+|+++||+..
T Consensus 148 r~~~~~~a~~iAEyf~~~~G~~VLv~~Dsltr 179 (276)
T d2jdid3 148 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 179 (276)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEEcchhH
Confidence 11223344555 37999999999854
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.02 E-value=0.096 Score=54.32 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..++|.|.|++|+||||+|+.++.+.
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998864
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.01 E-value=0.1 Score=52.88 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCchHHHHHHHHhc
Q 000202 998 TASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
...+|.++|++|+||||+|+.+..
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998843
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=88.97 E-value=0.092 Score=53.83 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.|.|.|++|+||||+|+.++.+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37799999999999999999875
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.91 E-value=0.087 Score=53.94 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 000202 212 LGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 212 i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
|.|.|++|+||||+|+.++.+.
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7788999999999999999875
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.85 E-value=0.09 Score=54.63 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhc
Q 000202 997 VTASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 997 ~~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
+..++|.|.|++|+||||+|+.++.
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999954
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=88.84 E-value=0.1 Score=52.67 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCchHHHHHHHHhc
Q 000202 998 TASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
..++|.|.|++|+||||+|+.+..
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999999999943
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=88.54 E-value=0.15 Score=56.60 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=26.3
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
+.|+|+|-||+||||+|..++..+...-..+.-++
T Consensus 3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID 37 (289)
T d2afhe1 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 57889999999999999999886665433344443
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=88.42 E-value=0.1 Score=55.44 Aligned_cols=23 Identities=26% Similarity=0.396 Sum_probs=21.1
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
+|+|-|++|+||||+|+.++.++
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999876
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.27 E-value=0.094 Score=55.14 Aligned_cols=22 Identities=32% Similarity=0.285 Sum_probs=19.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhc
Q 000202 1000 SKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.+|.++|.+|+||||+|+++..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999954
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=88.06 E-value=0.32 Score=52.63 Aligned_cols=50 Identities=22% Similarity=0.146 Sum_probs=35.2
Q ss_pred HHHHhhh-cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEee
Q 000202 197 EIESLLR-TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNV 246 (1866)
Q Consensus 197 ~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~ 246 (1866)
.|...|. .+-+.-+++-|+|.+|+||||||.+++......=..++|++.-
T Consensus 44 ~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE 94 (268)
T d1xp8a1 44 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 94 (268)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHhcCCCccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence 4555564 3324566899999999999999999888554433446777643
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=88.04 E-value=0.13 Score=53.23 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=19.4
Q ss_pred cEEEEEEecCCCchhHHHHHHH
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVF 230 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~ 230 (1866)
+-+|||+|..|+||||+|..+-
T Consensus 3 p~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 3 PIIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999998763
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=87.88 E-value=0.1 Score=53.08 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHhc
Q 000202 1002 IGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1002 i~I~G~gGvGKTtLa~~v~~ 1021 (1866)
|.|+|..|+|||||++.+..
T Consensus 3 i~I~G~~G~GKSTLl~~i~~ 22 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcHHHHHHHHHHh
Confidence 88999999999999999964
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.81 E-value=0.11 Score=52.99 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.2
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 000202 212 LGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 212 i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
|.|.|++|+||||+|+.++.+.
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4477999999999999998865
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=87.67 E-value=0.14 Score=57.30 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhc
Q 000202 1000 SKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.++..+|+.|+|||.+|+.+..
T Consensus 54 ~~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 54 GSFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCcchHHHHHHHHHH
Confidence 3778899999999999999854
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=87.51 E-value=0.12 Score=53.24 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=19.2
Q ss_pred cEEEEEcCCCchHHHHHHHHh
Q 000202 1000 SKIGVYGVGGIGKTAALKALI 1020 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~ 1020 (1866)
++|.|.|+.|+||||+++.+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 578899999999999999994
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=87.34 E-value=0.14 Score=52.29 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.8
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 000202 212 LGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 212 i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
|.|.|++|+||||+|+.++.+.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998764
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=87.21 E-value=0.17 Score=55.51 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhc
Q 000202 999 ASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.+.|.++|++|+||||||+.+++
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~ 54 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFE 54 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 44688999999999999999954
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.16 E-value=0.32 Score=52.76 Aligned_cols=24 Identities=29% Similarity=0.123 Sum_probs=20.3
Q ss_pred EEEEEEecCCCchhHHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
+.++|.|-+|+|||+|+..+....
T Consensus 69 Qr~~If~~~g~GKt~ll~~~~~~~ 92 (285)
T d2jdia3 69 QRELIIGDRQTGKTSIAIDTIINQ 92 (285)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHT
T ss_pred CEEEeecCCCCChHHHHHHHHHhH
Confidence 358999999999999999887643
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=87.03 E-value=0.73 Score=53.16 Aligned_cols=118 Identities=11% Similarity=0.113 Sum_probs=70.2
Q ss_pred eeeh-hhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHh
Q 000202 189 IGVE-WRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLL 267 (1866)
Q Consensus 189 vGr~-~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 267 (1866)
.|.. ..++.+.+++.. ...+|.|.|..|.||||....+.+.+...-...+=+.+.-++...... +.
T Consensus 140 LG~~~~~~~~l~~l~~~---~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~~~~---------q~- 206 (401)
T d1p9ra_ 140 LGMTAHNHDNFRRLIKR---PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIG---------QT- 206 (401)
T ss_dssp SCCCHHHHHHHHHHHTS---SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSE---------EE-
T ss_pred hcccHHHHHHHHHHHhh---hhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcccccCCCC---------ee-
Confidence 4544 445566666654 346899999999999999999998764432333333333222111100 00
Q ss_pred ccccccCccchhHHHHHHHhhcCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEc
Q 000202 268 NDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITT 325 (1866)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTT 325 (1866)
... ........+.++..|+..+=.|++.++.|.+........- ..| +.++||
T Consensus 207 -~v~-~~~~~~~~~~l~~~lR~dPDvi~igEiRd~~ta~~a~~aa---~tG-hlV~tT 258 (401)
T d1p9ra_ 207 -QVN-PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQAS---LTG-HLVMST 258 (401)
T ss_dssp -ECB-GGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHH---HTT-CEEEEE
T ss_pred -eec-CCcCCCHHHHHHHHHhhcCCEEEecCcCChHHHHHHHHHH---hcC-CeEEEE
Confidence 000 0111123477888899999999999999988777665541 234 455555
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=86.91 E-value=0.28 Score=50.89 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=30.3
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC-CCHHHHHHHHHHHhccC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY-WNTRKIQKQVLRQLSLH 1057 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~ 1057 (1866)
...||.++|+.|+||||.+..++.+... ... .+..|++... ....+-++..++.++..
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~-~g~-kV~lit~Dt~R~ga~eQL~~~a~~l~v~ 69 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYKK-KGF-KVGLVGADVYRPAALEQLQQLGQQIGVP 69 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHHH-TTC-CEEEEECCCSSHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH-CCC-ceEEEEeeccccchhHHHHHhccccCcc
Confidence 3568999999999998876665433222 222 3555654322 22334455566666654
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=86.77 E-value=0.13 Score=56.38 Aligned_cols=22 Identities=41% Similarity=0.847 Sum_probs=19.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhc
Q 000202 1000 SKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
+.|+|+|-||+||||+|..+..
T Consensus 2 r~Iai~gKGGvGKTT~a~nLA~ 23 (269)
T d1cp2a_ 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH
Confidence 5799999999999999988844
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=86.68 E-value=0.18 Score=55.65 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=25.7
Q ss_pred HHHHHHhccCCccEEEEEcCCCchHHHHHHHH
Q 000202 988 RKIFRYVNDVTASKIGVYGVGGIGKTAALKAL 1019 (1866)
Q Consensus 988 ~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v 1019 (1866)
..+...+.....++|.+.|-||+||||+|.++
T Consensus 9 ~~~~~~~~~~~~~iii~sGKGGVGKTT~a~nL 40 (279)
T d1ihua2 9 SALVDDIARNEHGLIMLMGKGGVGKTTMAAAI 40 (279)
T ss_dssp HHHHHHHHTTSCEEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHHHHH
Confidence 34445555677889999999999999999887
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.51 E-value=0.23 Score=52.91 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=28.1
Q ss_pred EEEEEE-ecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 210 YKLGIW-GIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 210 ~~i~I~-G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
|+|+|+ |-||+||||+|..++..++..-..++.++
T Consensus 2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD 37 (232)
T d1hyqa_ 2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVD 37 (232)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEe
Confidence 678887 89999999999999987766545566664
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.49 E-value=0.15 Score=52.14 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.6
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
++|.|+|++|+|||||++.+..+..
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4789999999999999999877643
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=86.45 E-value=0.23 Score=53.20 Aligned_cols=39 Identities=21% Similarity=0.170 Sum_probs=29.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSR 1039 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 1039 (1866)
-+++.|+|.+|+|||++|.++.. ........++|++...
T Consensus 26 gsl~li~G~pGsGKT~l~~qia~--~~~~~~~~~~~is~e~ 64 (242)
T d1tf7a2 26 DSIILATGATGTGKTLLVSRFVE--NACANKERAILFAYEE 64 (242)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH--HHHTTTCCEEEEESSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH--HHHHhccccceeeccC
Confidence 46899999999999999999844 3334556678887654
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=86.12 E-value=0.15 Score=53.97 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhc
Q 000202 999 ASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.+||+|.|++|+||||+|+.+.+
T Consensus 3 ~piI~I~GppGSGKgT~ak~La~ 25 (225)
T d1ckea_ 3 APVITIDGPSGAGKGTLCKAMAE 25 (225)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999944
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=86.10 E-value=0.23 Score=55.15 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=27.7
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEE
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 243 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (1866)
..++|.+.|-||+||||+|..++...+.+=..+..+
T Consensus 7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlv 42 (296)
T d1ihua1 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLV 42 (296)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEE
Confidence 467889999999999999999998776653333333
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.90 E-value=0.16 Score=53.40 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 000202 1001 KIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1001 vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
+|+|.|..|+||||+|+.+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998843
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=85.78 E-value=0.52 Score=50.89 Aligned_cols=34 Identities=18% Similarity=0.075 Sum_probs=25.3
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
.++|.|..|+|||+|+.........+-..++|..
T Consensus 69 r~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~~~ 102 (276)
T d1fx0a3 69 RELIIGDRQTGKTAVATDTILNQQGQNVICVYVA 102 (276)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEE
T ss_pred eEeeccCCCCChHHHHHHHHhhhcccCceeeeee
Confidence 4889999999999999987665444444555554
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.56 E-value=0.24 Score=53.54 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=28.2
Q ss_pred HHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 198 IESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 198 l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
|-.+|..+=+.-+++.|+|.+|+||||+|.+++....
T Consensus 25 LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~~~~~ 61 (254)
T d1pzna2 25 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 61 (254)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred HHHhhcCCccCCEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 4445544334567899999999999999999987554
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=85.52 E-value=0.2 Score=54.53 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
...+|||.|.+|.||||+|+++.+.+..
T Consensus 3 k~pIIgIaG~SGSGKTTva~~l~~i~~~ 30 (288)
T d1a7ja_ 3 KHPIISVTGSSGAGTSTVKHTFDQIFRR 30 (288)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHhh
Confidence 4568999999999999999999886654
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=85.08 E-value=0.26 Score=51.41 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=20.9
Q ss_pred CCccEEEEEcCCCchHHHHHHHHh
Q 000202 997 VTASKIGVYGVGGIGKTAALKALI 1020 (1866)
Q Consensus 997 ~~~~vi~I~G~gGvGKTtLa~~v~ 1020 (1866)
....+|.+.|++|+||||||+.+.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~ 45 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELE 45 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 445689999999999999999984
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=84.92 E-value=0.37 Score=49.85 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=33.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC-CCHHHHHHHHHHHhccC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY-WNTRKIQKQVLRQLSLH 1057 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~ 1057 (1866)
.+||.++|+.|+||||.+..+..+... .. ..+..+++... ....+-++..++.++..
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~-~g-~kV~lit~Dt~R~gA~eQL~~~a~~l~v~ 67 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKG-KG-RRPLLVAADTQRPAAREQLRLLGEKVGVP 67 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH-TT-CCEEEEECCSSCHHHHHHHHHHHHHHTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-CC-CcEEEEecccccchHHHHHHHHHHhcCCc
Confidence 468999999999998877666433322 22 23444444221 22344555666666653
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=84.84 E-value=0.3 Score=52.04 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=28.1
Q ss_pred EEEEEE-ecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 210 YKLGIW-GIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 210 ~~i~I~-G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
++|+|+ +-||+||||+|..++...+..-..+..++
T Consensus 3 ~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD 38 (237)
T d1g3qa_ 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVD 38 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 688888 78999999999999997766544565655
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=84.77 E-value=0.2 Score=51.64 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=18.5
Q ss_pred cEEEEEcCCCchHHHHHHHH
Q 000202 1000 SKIGVYGVGGIGKTAALKAL 1019 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v 1019 (1866)
-+|||+|+.|+||||+|..+
T Consensus 4 ~IIgitG~~gSGKstva~~l 23 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALL 23 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999987
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=84.74 E-value=0.33 Score=54.13 Aligned_cols=36 Identities=36% Similarity=0.578 Sum_probs=27.5
Q ss_pred HHHHHHHHh--ccCCccEEEEEcCCCchHHHHHHHHhc
Q 000202 986 NVRKIFRYV--NDVTASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 986 ~~~~i~~~l--~~~~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
...++++.+ ...+..+|+|.|.+|+|||||...+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 36 AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHH
Confidence 445556555 345667899999999999999988854
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.66 E-value=0.23 Score=52.34 Aligned_cols=39 Identities=23% Similarity=0.219 Sum_probs=28.0
Q ss_pred HHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 197 EIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 197 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
.|-.+|..+=..-.++.|.|.+|+||||||.+++.....
T Consensus 11 ~LD~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~~~ 49 (242)
T d1n0wa_ 11 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQL 49 (242)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred HHHHhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 344455433233568999999999999999999875443
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.56 E-value=0.2 Score=51.73 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhc
Q 000202 1000 SKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.+|.|.|++|+||||+|+.+++
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999954
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=84.55 E-value=0.43 Score=52.54 Aligned_cols=77 Identities=13% Similarity=0.159 Sum_probs=41.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccc--eEEEEEecCCCCHHHHHHHHHHHhc--cCCCCccCHHHHHHHHHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFH--VIIWVTVSRYWNTRKIQKQVLRQLS--LHCKDRETDAQVAEKLWQV 1074 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~ 1074 (1866)
.-+|||.|..|+||||+|+.+. ......+. .+.-++...-.-....+.. +.+. .+....-+.+.+.+.+...
T Consensus 80 P~iIGIaG~sgSGKSTla~~L~--~lL~~~~~~~~v~~Is~D~F~~~~~~l~~--~~~~~~~g~Pes~D~~~L~~~L~~l 155 (308)
T d1sq5a_ 80 PYIISIAGSVAVGKSTTARVLQ--ALLSRWPEHRRVELITTDGFLHPNQVLKE--RGLMKKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH--HHHTTSTTCCCEEEEEGGGGBCCHHHHHH--HTCTTCTTSGGGBCHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCCcHHHHHHH--HHHhhhcCCCceEEEeeeeeECCchHHHH--hcCCccCCchHhhhHHHHHHHHHHH
Confidence 3489999999999999999983 33332221 2233333322222222211 1111 1223345677777777777
Q ss_pred hCCCc
Q 000202 1075 LNGEK 1079 (1866)
Q Consensus 1075 L~~kr 1079 (1866)
..++.
T Consensus 156 k~g~~ 160 (308)
T d1sq5a_ 156 KSGVP 160 (308)
T ss_dssp TTTCS
T ss_pred HcCCC
Confidence 66654
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=84.50 E-value=0.19 Score=52.06 Aligned_cols=26 Identities=27% Similarity=0.116 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..-+|+|-|.-|+||||+|+.+.+..
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999876643
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=84.37 E-value=0.5 Score=52.18 Aligned_cols=22 Identities=36% Similarity=0.382 Sum_probs=18.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhc
Q 000202 1000 SKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.++.++|.+|+|||.||+.+..
T Consensus 124 g~~l~~G~pG~GKT~la~ala~ 145 (321)
T d1w44a_ 124 GMVIVTGKGNSGKTPLVHALGE 145 (321)
T ss_dssp EEEEEECSSSSCHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 3566789999999999999954
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=84.16 E-value=0.42 Score=49.57 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=35.4
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC-CCHHHHHHHHHHHhccC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY-WNTRKIQKQVLRQLSLH 1057 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~ 1057 (1866)
...||.++|+.|+||||-+..++.+.. +.. ..+..+++... ....+-++..++.++..
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~-~kV~lit~Dt~R~gA~eQL~~~a~~l~i~ 68 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFV-DEG-KSVVLAAADTFRAAAIEQLKIWGERVGAT 68 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH-HTT-CCEEEEEECTTCHHHHHHHHHHHHHHTCE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-CceEEEeecccccchhHHHHHHhhhcCcc
Confidence 345899999999999887666643322 222 34556655432 23345566666777653
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=84.07 E-value=0.48 Score=53.76 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=20.4
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.+++.|+|.+|.||||++.++...+
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~~l~~l 187 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAKLLAAL 187 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCceehHHHHHHHH
Confidence 3588999999999999987766533
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.90 E-value=0.36 Score=51.99 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=28.8
Q ss_pred HHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 197 EIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 197 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.|-++|..+=+.-+++.|+|.+|+|||++|.+++...
T Consensus 25 ~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~~ 61 (258)
T d1v5wa_ 25 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 61 (258)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445555444556799999999999999999998754
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=83.88 E-value=0.27 Score=54.93 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhc
Q 000202 999 ASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.+.|.++|++|+|||.||+++++
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~ 71 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAK 71 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhh
Confidence 35577999999999999999965
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=83.67 E-value=0.29 Score=52.37 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=22.4
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
||+|.|..|.|||||..++.+......
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~~~~ 28 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLEDNY 28 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhCC
Confidence 789999999999999999987544433
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=83.43 E-value=0.38 Score=52.05 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=24.8
Q ss_pred HHHHHhc-cCCccEEEEEcCCCchHHHHHHHHhcC
Q 000202 989 KIFRYVN-DVTASKIGVYGVGGIGKTAALKALISY 1022 (1866)
Q Consensus 989 ~i~~~l~-~~~~~vi~I~G~gGvGKTtLa~~v~~~ 1022 (1866)
++++.+. =..-+.++|.|..|+|||+|+..+.++
T Consensus 32 r~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 32 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp HHHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred eeeeecccccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 3455552 223457999999999999999998653
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=83.42 E-value=0.41 Score=53.44 Aligned_cols=63 Identities=19% Similarity=0.135 Sum_probs=31.3
Q ss_pred HHHHHHHh--ccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHH
Q 000202 987 VRKIFRYV--NDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQ 1049 (1866)
Q Consensus 987 ~~~i~~~l--~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 1049 (1866)
..++++.+ ...+..+|+|+|.+|+|||||...+.....-++.=-.++-++-+.+++-..++.+
T Consensus 40 ~~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgd 104 (327)
T d2p67a1 40 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGD 104 (327)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-----------
T ss_pred HHHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccc
Confidence 34455555 2345778999999999999999888543222221012233444444554445444
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=83.18 E-value=0.25 Score=54.66 Aligned_cols=22 Identities=36% Similarity=0.795 Sum_probs=19.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHh
Q 000202 999 ASKIGVYGVGGIGKTAALKALI 1020 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~ 1020 (1866)
.+.|+|+|-||+||||+|.++.
T Consensus 2 Mr~IaisgKGGVGKTT~a~NLA 23 (289)
T d2afhe1 2 MRQCAIYGKGGIGKSTTTQNLV 23 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHH
Confidence 4678899999999999988874
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=82.93 E-value=0.24 Score=50.80 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=18.5
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 000202 1001 KIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1001 vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.|.|.|++|+||||+|+.+.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477999999999999999944
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.83 E-value=0.41 Score=49.82 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.9
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
.|+|-|+-|+||||+++.+.+++..+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~~ 27 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 58999999999999999999877654
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.76 E-value=0.25 Score=50.18 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHhc
Q 000202 1002 IGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1002 i~I~G~gGvGKTtLa~~v~~ 1021 (1866)
|.|.|++|+||||+|+.+..
T Consensus 3 I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77999999999999999943
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.61 E-value=0.35 Score=51.76 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=23.6
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
+++.|+|-|+-|+||||+++.+.+...
T Consensus 1 ~pk~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHh
Confidence 467899999999999999999988653
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=82.45 E-value=0.3 Score=55.22 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=31.4
Q ss_pred CCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHH
Q 000202 185 SKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFN 231 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~ 231 (1866)
....+|.+.....|.-..... +..-|.|.|.+|+||||||+.+..
T Consensus 6 f~~I~Gq~~~kral~laa~~~--~~h~vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 6 FSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp GGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhhccCcHHHHHHHHHHHhcc--CCCeEEEECCCCccHHHHHHHHHH
Confidence 346799987665444333211 122478999999999999999986
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=82.38 E-value=0.33 Score=49.75 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=18.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhc
Q 000202 1000 SKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
-.|.|.|++|+||||+|+.+..
T Consensus 7 mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHH
Confidence 3567889999999999999944
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.08 E-value=0.32 Score=50.13 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhc
Q 000202 999 ASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.++|.|.|++|+||||+|+.+..
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999944
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=81.83 E-value=0.3 Score=51.55 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=31.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCC
Q 000202 1001 KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKD 1060 (1866)
Q Consensus 1001 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 1060 (1866)
+|+|-|++|+||||+|+.+.. +|... + .+.-++++.++.........
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~------~lg~~-~------istGdl~R~~a~~~~~~~~~ 51 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAK------DFGFT-Y------LDTGAMYRAATYMALKNQLG 51 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHH------HHCCE-E------EEHHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHH------HhCCc-E------ECHHHHHHHHHHHHHHcCCC
Confidence 588999999999999999943 23211 1 24567778777655544333
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=81.79 E-value=0.4 Score=51.00 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=27.6
Q ss_pred HHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHh
Q 000202 195 IKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 195 l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
+..|-+.|..+=+.-.++.|+|.+|+|||+||.+++..
T Consensus 12 i~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~ 49 (242)
T d1tf7a1 12 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 49 (242)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cHHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 34455566533334568899999999999999987654
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.66 E-value=0.28 Score=52.68 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=28.2
Q ss_pred HHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHh
Q 000202 195 IKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 195 l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
+..|-.+|..+=+.-+++.|.|.+|+||||||.+++..
T Consensus 20 i~~LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 20 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp CHHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CHHHHhhhCCCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34455555543344568999999999999999998864
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=81.63 E-value=0.31 Score=49.64 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=18.4
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 000202 1001 KIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1001 vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.|.|.|++|+||||+|+.++.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 377999999999999999954
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.59 E-value=0.29 Score=49.82 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHhc
Q 000202 1002 IGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1002 i~I~G~gGvGKTtLa~~v~~ 1021 (1866)
|.|.|++|+||||+|+.++.
T Consensus 3 I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77889999999999999954
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=81.47 E-value=2.7 Score=45.36 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.8
Q ss_pred cEEEEEEecCCCchhHHHHHHHHh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
.-.|+|+|++.+|||||...+..+
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~ 135 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKK 135 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred ceEEEEEecCccchhhhhhhhhcc
Confidence 445899999999999999998763
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=81.43 E-value=0.31 Score=50.91 Aligned_cols=20 Identities=35% Similarity=0.365 Sum_probs=17.9
Q ss_pred EEEEEecCCCchhHHHHHHH
Q 000202 211 KLGIWGIGGIGKTTIAGAVF 230 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~ 230 (1866)
+|||+|+.|+||||.|+.+.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 89999999999999998653
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.16 E-value=0.35 Score=49.23 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhc
Q 000202 1000 SKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
++|.|+|+.|+|||||++.+..
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~ 24 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRE 24 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4788999999999999999843
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.14 E-value=0.29 Score=50.24 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 000202 1001 KIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1001 vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.|.|+|+.|+|||||++.+..
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 377999999999999999843
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=80.92 E-value=0.6 Score=50.37 Aligned_cols=87 Identities=14% Similarity=0.166 Sum_probs=48.2
Q ss_pred EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCC-CHHHHHHHHHHHhccC-------CCCccC-----HHHH
Q 000202 1001 KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYW-NTRKIQKQVLRQLSLH-------CKDRET-----DAQV 1067 (1866)
Q Consensus 1001 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~-----~~~~ 1067 (1866)
.++|+|..|+|||+|+....... ..+-+.++++-+.+.. ...++.+++.+.=... ..+... ....
T Consensus 69 r~~Ifg~~g~GKt~l~~~~~~~~--~~~~~v~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~tsd~p~~~r~~a~~~ 146 (276)
T d1fx0a3 69 RELIIGDRQTGKTAVATDTILNQ--QGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYT 146 (276)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTC--CTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHH
T ss_pred eEeeccCCCCChHHHHHHHHhhh--cccCceeeeeeecchhHHHHHHHHhhccCCcceeeeecccccCccHHHHHHHHHH
Confidence 48899999999999998753322 2334566777666542 3334444433221000 001110 1123
Q ss_pred HHHHHHHh--CCCcEEEEEeCCCC
Q 000202 1068 AEKLWQVL--NGEKFLLLLDDVWE 1089 (1866)
Q Consensus 1068 ~~~l~~~L--~~kr~LlVlDdv~~ 1089 (1866)
.-.+.+++ +++++|+++||+..
T Consensus 147 a~tiAEyfrd~G~~Vlll~Dsltr 170 (276)
T d1fx0a3 147 GAALAEYFMYRERHTLIIYDDLSK 170 (276)
T ss_dssp HHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHcCCceeEEeeccHH
Confidence 33344444 58999999999854
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=80.46 E-value=0.34 Score=49.91 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHh
Q 000202 999 ASKIGVYGVGGIGKTAALKALI 1020 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~ 1020 (1866)
.-+|+|-|..|+||||+++.+.
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~ 30 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFE 30 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTG
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999984
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=80.42 E-value=0.49 Score=50.67 Aligned_cols=40 Identities=25% Similarity=0.264 Sum_probs=29.0
Q ss_pred HHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 195 IKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 195 l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
+..|-++|..+=..-.++.|.|.+|+|||++|.+++....
T Consensus 20 ~~~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 20 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CHHHHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3445555543323456899999999999999999987543
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=80.40 E-value=0.38 Score=49.88 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=21.7
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+|.|+|++|+|||||.+.+..+..
T Consensus 3 ~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 3 TLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4788999999999999999887643
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=80.40 E-value=0.54 Score=47.49 Aligned_cols=32 Identities=25% Similarity=0.217 Sum_probs=23.1
Q ss_pred HHhhhcCCCCcEEEEEEecCCCchhHHHHHHHH
Q 000202 199 ESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFN 231 (1866)
Q Consensus 199 ~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~ 231 (1866)
-+++....... .|+|+|.+|+|||||..++..
T Consensus 4 ~~~~~~~~k~~-kI~lvG~~~vGKTsLl~~l~~ 35 (186)
T d1f6ba_ 4 LQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 35 (186)
T ss_dssp HHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHhccccCCCC-EEEEECCCCCCHHHHHHHHhC
Confidence 34444444334 477999999999999988755
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=80.37 E-value=0.37 Score=47.51 Aligned_cols=20 Identities=30% Similarity=0.272 Sum_probs=18.5
Q ss_pred EEEEecCCCchhHHHHHHHH
Q 000202 212 LGIWGIGGIGKTTIAGAVFN 231 (1866)
Q Consensus 212 i~I~G~gGiGKTtLA~~~~~ 231 (1866)
|.|+|.+|+|||||..++..
T Consensus 3 ivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67999999999999999876
|