Citrus Sinensis ID: 000217
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1849 | ||||||
| 359479667 | 1823 | PREDICTED: uncharacterized protein LOC10 | 0.979 | 0.993 | 0.626 | 0.0 | |
| 147802454 | 1837 | hypothetical protein VITISV_039693 [Viti | 0.961 | 0.967 | 0.607 | 0.0 | |
| 356503558 | 1830 | PREDICTED: uncharacterized protein LOC10 | 0.983 | 0.993 | 0.563 | 0.0 | |
| 356570592 | 1773 | PREDICTED: uncharacterized protein LOC10 | 0.951 | 0.992 | 0.556 | 0.0 | |
| 357440635 | 1796 | Centromere protein [Medicago truncatula] | 0.961 | 0.989 | 0.537 | 0.0 | |
| 359477550 | 1822 | PREDICTED: uncharacterized protein LOC10 | 0.975 | 0.989 | 0.494 | 0.0 | |
| 4587570 | 1744 | Strong similarity to gi|2244833 centrome | 0.936 | 0.993 | 0.504 | 0.0 | |
| 186478086 | 1733 | kinase interacting (KIP1-like) protein [ | 0.930 | 0.993 | 0.503 | 0.0 | |
| 297848532 | 1736 | kinase interacting family protein [Arabi | 0.933 | 0.994 | 0.502 | 0.0 | |
| 225432752 | 1808 | PREDICTED: uncharacterized protein LOC10 | 0.968 | 0.990 | 0.490 | 0.0 |
| >gi|359479667|ref|XP_003632326.1| PREDICTED: uncharacterized protein LOC100852899 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2134 bits (5530), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1166/1860 (62%), Positives = 1428/1860 (76%), Gaps = 48/1860 (2%)
Query: 1 MAAVAHADSKRKYSWWWDSHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEM 60
MA+++H DS+RKYSWWWDSHISPKNSKWLQENLTDMD KVKQMIKLIEEDADSFARRAEM
Sbjct: 1 MASLSHPDSRRKYSWWWDSHISPKNSKWLQENLTDMDAKVKQMIKLIEEDADSFARRAEM 60
Query: 61 YYKKRPELMKLVEEFYRAYRALAERYDHATGALRQAHRTMAEAFPNQVPFALGDDSPAGT 120
YYKKRPELMKLVEEFYRAYRALAERYDHATGALRQA RTMAEAFPNQVPF L DDSPAG+
Sbjct: 61 YYKKRPELMKLVEEFYRAYRALAERYDHATGALRQAQRTMAEAFPNQVPF-LTDDSPAGS 119
Query: 121 --EADPRTPELAPA-RAIFYPDELQNDSLGLSSSHLLALKKNGAFTDDSDTVTSRRGLKQ 177
EA+P TPE+ PA RA F PDELQ D+LGLSSSH A+K+NGAFT++ D+V+S++GLKQ
Sbjct: 120 SAEAEPHTPEMPPAVRAFFEPDELQKDALGLSSSHFHAVKRNGAFTEEPDSVSSKKGLKQ 179
Query: 178 LNDFLGSGEKVTHGKFGEGRARKGLNFHDAEENEQ-LQHNESYDIKARVPSESERMGKAE 236
LND GSG+ KF EGRARKGLNFHDA+E E+ +Q+ +S+
Sbjct: 180 LNDLFGSGDAPNIAKFAEGRARKGLNFHDADEKERNVQNTDSH---------------TA 224
Query: 237 MEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQ 296
EIL LK +LA+LEAEKEAG +Q++QSLERLSNLE+EVS A+EDSKGL+E+A AE EVQ
Sbjct: 225 TEILALKESLARLEAEKEAGRVQHQQSLERLSNLEAEVSRAQEDSKGLNERAGKAENEVQ 284
Query: 297 TLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKL 356
TLKEAL +LE ERE ++ QYQQCL+++S++E+ IS ++ DA +L++RASK+E+EA LK
Sbjct: 285 TLKEALTKLEAERETSLLQYQQCLERISDLERTISHSQEDAGKLNERASKSEVEAAALKQ 344
Query: 357 DLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGK 416
DLAR+E+EKE A+++Y++C IS LE KL+ +E+DS+RIN+ A+KAE EVE LKQA+
Sbjct: 345 DLARVESEKEGALLQYKQCLEKISDLESKLVQAEDDSRRINERAEKAEREVETLKQAVAS 404
Query: 417 LTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERS 476
LTEEKEA A QYQQCLE I+ LE K++ AEEEAQRL+ E+DNG AKLKGAEE+CLLLER+
Sbjct: 405 LTEEKEAAARQYQQCLETIASLELKISCAEEEAQRLNGEIDNGVAKLKGAEEQCLLLERT 464
Query: 477 NQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQS 536
N +L ELES+ QK+G+Q +ELTEKQKELGRLWT IQEERLRF+EAET FQ+LQHLHSQS
Sbjct: 465 NHSLQFELESLAQKLGAQCEELTEKQKELGRLWTSIQEERLRFMEAETTFQSLQHLHSQS 524
Query: 537 QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEI 596
Q+ELRSLA ELQ++ QILKDM T NQ LQ+EV KVKEEN+GLNE NLSSA SIKN+QDEI
Sbjct: 525 QEELRSLATELQSKGQILKDMETHNQGLQDEVHKVKEENRGLNEFNLSSAVSIKNMQDEI 584
Query: 597 LSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFG 656
LSLRETI KLE EVELRVDQRNALQQEIYCLKEELN+LNK ++AM++QVE V L PE FG
Sbjct: 585 LSLRETITKLEMEVELRVDQRNALQQEIYCLKEELNDLNKNYRAMLDQVEGVGLKPECFG 644
Query: 657 LSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRD 716
LSVKELQ+ENS LKE+ +R + E VALLEKLEIMEKLLEKNA+LENSLSDL+ ELEG+R+
Sbjct: 645 LSVKELQEENSNLKEICQRGKSENVALLEKLEIMEKLLEKNALLENSLSDLSAELEGLRE 704
Query: 717 KVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEG 776
KVKALEE Q+LL EKS LVAE +L S LQ +L+KLS++N + NSL DANAE+EG
Sbjct: 705 KVKALEESYQSLLGEKSILVAENATLTSHLQTKTNHLEKLSEKNMLMENSLSDANAELEG 764
Query: 777 LRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEE 836
LR +SK LEDSC LLDNEKS LI+ER L+SQL+ ++ L+DLE+ Y ELE +Y GLE+E
Sbjct: 765 LRTRSKGLEDSCQLLDNEKSGLISERETLISQLEATQQRLEDLERRYTELEEKYFGLEKE 824
Query: 837 KESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDK 896
KESTL KVEELQ SL+AEK + A+F QLSETRLAGM+S+I LQ EG CRK+ +EEE +K
Sbjct: 825 KESTLCKVEELQVSLEAEKLEQANFAQLSETRLAGMKSEIHLLQVEGRCRKEEFEEEQNK 884
Query: 897 ALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSL 956
+++QIEIFI QK +Q+L KNFSLL ECQKL + S LSEKLI +LE+EN EQQ ++ SL
Sbjct: 885 VVNSQIEIFIFQKCVQELAAKNFSLLTECQKLSEVSKLSEKLISELEHENLEQQVQVNSL 944
Query: 957 VDQIKVLRVQLYQLLEILEIDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQ 1016
VDQ+K+LR +Y + L+IDA+H E K++QD QT+L+ + +L+ + S+ K ++
Sbjct: 945 VDQVKMLRTGMYHVSRALDIDAEHRAEDKIDQD---QTVLNAIICQLENTKSSLCKTQDE 1001
Query: 1017 NHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEEL 1076
N Q +++ +LV +L QL LEA LATERN L EE RI+SEQF LQ E +L E++E+L
Sbjct: 1002 NQQSIVQKLVLVTVLEQLGLEATQLATERNTLDEECRIRSEQFSSLQSETHQLLEVSEKL 1061
Query: 1077 RVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEK 1136
R++V E +H EEVL E+ L L ELQ A +LQ +N +L+EK SL KK L L+EEK
Sbjct: 1062 RLKVREGDHKEEVLTAEIGILQGKLLELQEAHGNLQKENSLILEEKGSLSKKFLSLEEEK 1121
Query: 1137 HSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKD 1196
LEEEN V+F ETIS SNLS IFKD I+EK V++ +L +NL++L +N LEEKVR +
Sbjct: 1122 RILEEENWVVFGETISLSNLSLIFKDFITEKSVQLKELGQNLEELHNVNYALEEKVRTME 1181
Query: 1197 GKLEDVQMQNSLLKQSLEKSENELVAIGCVRDQLNCEIANGKDLLSRKEKELFVAEQILC 1256
GKL V+M+N LK SLEKSENEL + DQLN EI NG+D+LSRKE EL A Q L
Sbjct: 1182 GKLGMVEMENFHLKDSLEKSENELNTVRSFADQLNHEIENGRDILSRKETELLEAGQKLS 1241
Query: 1257 SLQNERTELHMKVEDLTCKYDEAKIIQEDQGKQIRKLTEDYDCQIKETRCIHELNMKLEA 1316
+LQ+E+ ELH VE + + DE K+I+EDQ KQI KL+E+ D Q K+ C+ E+N LEA
Sbjct: 1242 ALQDEKAELHKTVEVVKSECDEVKVIREDQEKQILKLSEENDHQKKQNGCLREVNRGLEA 1301
Query: 1317 ELGKLLEELEGTRYREESLYHELEKERKHAGLWETQATELFSELQISSVCEVLRNEKAHE 1376
+L KL EE+E + REE+L H+L++ R LWETQA FSELQIS+V E EK HE
Sbjct: 1302 KLWKLCEEIEEAKVREETLNHDLQRGRDEVELWETQAAAFFSELQISNVREAFFEEKVHE 1361
Query: 1377 LSRACENLEDRSNSNDIEINQLKEKANALECENGGLKAHLAASIPAVISLKDSIRSLEN- 1435
L AC++LE+ SNS EI LKE+ N LE ENGGLK LAA P +I L+DS+ +LEN
Sbjct: 1362 LIEACKSLENISNSRSREIELLKERVNKLEGENGGLKTQLAAYTPTIICLRDSVAALENR 1421
Query: 1436 ---HTLLHKADNDEVKDPDLVSHMQAEGCQETSEDQIATVLDG---FTDLQMRVKAIEKA 1489
HT LH+AD + KD LV H+ E Q+ SE+QIA V +G DLQ R+KAIEK
Sbjct: 1422 TLSHTNLHQADTKDKKDAKLVGHLHVERSQDCSENQIAMVPEGNSDLQDLQTRIKAIEKG 1481
Query: 1490 IIEKESLAMLETLNANSKLEVAMRQIEELKCRSNLRQESGQTSKRVGRKYEQEEPHDGPS 1549
+IE E LA+ E L+ N+KLE AM+QIEELK + + R+E+ QTS+ + + E+EE DG
Sbjct: 1482 LIEMERLALEEHLDTNAKLEAAMKQIEELKSQRSFRRENIQTSRHLNPQQEEEELGDGTC 1541
Query: 1550 DNLKLQKRTPEISEEGDEVMTKDIMLDQVSECSSHGLSRRGTMEADDQMLELWETADHGG 1609
D+ KL TKDIMLDQ+SECSS+G+SRR T E DDQMLELWET D G
Sbjct: 1542 DDRKLH--------------TKDIMLDQISECSSYGISRRETAEVDDQMLELWETTDLNG 1587
Query: 1610 SIDLKVAKSQKVARTPTDYHEVKAVKQQKSKNPTIESLVEKELGVDKLEISKRYSGSQKE 1669
SI L VAK+ K A P YH+V A + KS++P+ E +VEKELGVDKLEISKR+ +E
Sbjct: 1588 SIALTVAKAHKGATAPVGYHQVVA-EGHKSEHPSSEIMVEKELGVDKLEISKRFVEPGQE 1646
Query: 1670 GSQRKILERLDSDAQKLTNLQITVQDLKKKVETSEKGIKRKGIEYDTVKEQLEEAEEAIM 1729
G++RK LERL SDAQKLTNLQITVQDLKKKV+ +E KGIEYDTVK QLEE E AI+
Sbjct: 1647 GNKRKTLERLASDAQKLTNLQITVQDLKKKVQFTEDSRNVKGIEYDTVKGQLEEVEGAIL 1706
Query: 1730 KLLDVNRKLLTNIEDLSLSFDGKSATESDDSGSMRRRKVSEQARRVSEKIGRLQLEVQKL 1789
KL D N KL NIED SLS DGK A E ++S S+RR ++SEQAR+ SEKIGRLQLEVQ++
Sbjct: 1707 KLCDSNSKLTKNIEDNSLS-DGKPAMELEESRSVRRGRISEQARKGSEKIGRLQLEVQRI 1765
Query: 1790 QFLLLRLDDEKESRGRTRITERKTRVLLRDYLYGYGGLRSNQKRKKAHFCACVQPPTRGD 1849
QFLLL+LDDEKES+ +TRI+E K RVLLRDYL YGG R+ KRKKAHFC+CVQ PT GD
Sbjct: 1766 QFLLLKLDDEKESKAKTRISEPKRRVLLRDYL--YGGRRTTHKRKKAHFCSCVQSPTTGD 1823
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147802454|emb|CAN70401.1| hypothetical protein VITISV_039693 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356503558|ref|XP_003520574.1| PREDICTED: uncharacterized protein LOC100810726 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356570592|ref|XP_003553469.1| PREDICTED: uncharacterized protein LOC100787384 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357440635|ref|XP_003590595.1| Centromere protein [Medicago truncatula] gi|355479643|gb|AES60846.1| Centromere protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|359477550|ref|XP_003631994.1| PREDICTED: uncharacterized protein LOC100254535 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|4587570|gb|AAD25801.1|AC006550_9 Strong similarity to gi|2244833 centromere protein homolog from Arabidopsis thaliana chromosome 4 contig gb|Z97337. ESTs gb|T20765 and gb|AA586277 come from this gene [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|186478086|ref|NP_171807.2| kinase interacting (KIP1-like) protein [Arabidopsis thaliana] gi|332189405|gb|AEE27526.1| kinase interacting (KIP1-like) protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297848532|ref|XP_002892147.1| kinase interacting family protein [Arabidopsis lyrata subsp. lyrata] gi|297337989|gb|EFH68406.1| kinase interacting family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|225432752|ref|XP_002283122.1| PREDICTED: uncharacterized protein LOC100254535 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1849 | ||||||
| TAIR|locus:2007569 | 1733 | NET1D "AT1G03080" [Arabidopsis | 0.837 | 0.893 | 0.401 | 2.9e-270 | |
| TAIR|locus:2130210 | 1710 | NET1B "Networked 1B" [Arabidop | 0.800 | 0.866 | 0.305 | 1.2e-182 | |
| TAIR|locus:2132348 | 1111 | NET1C "AT4G02710" [Arabidopsis | 0.478 | 0.796 | 0.298 | 1.7e-83 | |
| TAIR|locus:2064387 | 517 | NET4B "AT2G30500" [Arabidopsis | 0.048 | 0.172 | 0.685 | 3.1e-39 | |
| TAIR|locus:2041203 | 947 | NET2D "AT2G22560" [Arabidopsis | 0.055 | 0.108 | 0.644 | 1.4e-36 | |
| TAIR|locus:2024271 | 928 | NET2B "AT1G09720" [Arabidopsis | 0.062 | 0.123 | 0.565 | 3.2e-35 | |
| TAIR|locus:2142554 | 848 | NET2C "AT5G10500" [Arabidopsis | 0.061 | 0.133 | 0.561 | 1.7e-33 | |
| UNIPROTKB|F1NI68 | 2142 | GOLGA4 "Uncharacterized protei | 0.795 | 0.686 | 0.200 | 5.3e-31 | |
| UNIPROTKB|F1NMQ0 | 2150 | GOLGA4 "Uncharacterized protei | 0.795 | 0.683 | 0.200 | 6.9e-31 | |
| TAIR|locus:2161268 | 558 | NET4A "Networked 4A" [Arabidop | 0.273 | 0.906 | 0.261 | 7.1e-31 |
| TAIR|locus:2007569 NET1D "AT1G03080" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2599 (920.0 bits), Expect = 2.9e-270, P = 2.9e-270
Identities = 638/1590 (40%), Positives = 909/1590 (57%)
Query: 158 KNGAFTDDSDTVTSRRGLKQLNDFLGSGEKVTHGK-FGEGRARKGLNFHDAEENEQLQHN 216
+ GAF S +++ +K+ F+ + V+ GK F +ARKGLNF++ + E
Sbjct: 145 RKGAFGISSSHLST---VKRNIAFMEDPQSVSSGKGFKTAKARKGLNFNNVDGKE----- 196
Query: 217 ESYDIKARVPSESERMGKAEMEIXXXXXXXXXXXXXXXXXXXQYRQSLERLSNLESEVSH 276
I A+V SESER KAE EI Q+ Q+LE+LSNLESEVS
Sbjct: 197 ----INAKVLSESERASKAEAEIVALKDALSKVQAEKEASLAQFDQNLEKLSNLESEVSR 252
Query: 277 AREDSKGLSEQASIAEAEVQXXXXXXXXXXXXXXXNIRQYQQCLDKLSNMEKNISRAEAD 336
A+EDS+ L E+A+ AEAEV+ ++ QYQQCL ++++E IS A+ +
Sbjct: 253 AQEDSRVLIERATRAEAEVETLRESLSKVEVEKESSLLQYQQCLQNIADLEDRISLAQKE 312
Query: 337 AVELSDRASKAEIEAQTLKLDLARIXXXXXXXXXXXXXCSRMISALEDKLLHSEEDSKRI 396
A E+ +RA++AE E LK L C + IS LE++L +EEDS+
Sbjct: 313 AGEVDERANRAEAETLALKQSLVSSETDKEAALVQYQQCLKTISNLEERLHKAEEDSRLT 372
Query: 397 NKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSEL 456
N+ A+ AE EVE LKQ + KL EE EA LQYQQCL+ I+ L+ KL A+EE QRL E+
Sbjct: 373 NQRAENAEGEVESLKQKVSKLIEENEAYELQYQQCLDTIADLKLKLFHAQEETQRLSREI 432
Query: 457 DNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEER 516
++G AKLK AEEKC++LERSNQ LHSEL+ +++K+G+QS ELTEKQKELGRLWTC+QEE
Sbjct: 433 EDGVAKLKFAEEKCVVLERSNQNLHSELDGLLEKLGNQSHELTEKQKELGRLWTCVQEEN 492
Query: 517 LRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQXXXXXXXXXXX 576
LRF+EAETAFQTLQ LHSQSQ+EL +LA ELQNR+QILKDM RN LQ
Sbjct: 493 LRFMEAETAFQTLQQLHSQSQEELSTLALELQNRSQILKDMEARNNGLQEEVQEAKDQSK 552
Query: 577 XXXXXXXSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNK 636
SSA SIK+LQ+E+ LRETI KLEAEVELRVDQRNALQQEIYCLKEEL+++ K
Sbjct: 553 SLNELNLSSAASIKSLQEEVSKLRETIQKLEAEVELRVDQRNALQQEIYCLKEELSQIGK 612
Query: 637 KHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVAXXXXXXXXXXXXXX 696
KHQ+MVEQVE V L+PE+FG SVKELQ+ENSKLKE+ ER+ EK A
Sbjct: 613 KHQSMVEQVELVGLHPESFGSSVKELQEENSKLKEIRERESIEKTALIEKLEMMEKLVQK 672
Query: 697 NAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKL 756
N +LENS+SDLN ELE +R K+K LEE +L EKS L +EK+ L S+LQ EN KKL
Sbjct: 673 NLLLENSISDLNAELETIRGKLKTLEEASMSLAEEKSGLHSEKDMLISRLQSATENSKKL 732
Query: 757 SDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGL 816
S+EN L NSLF+AN E+E L++K KSLE+SC LL+++K+ L +ER +L+S +D RK +
Sbjct: 733 SEENMVLENSLFNANVELEELKSKLKSLEESCHLLNDDKTTLTSERESLLSHIDTMRKRI 792
Query: 817 KDLEKSYAXXXXXXXXXXXXXXSTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQI 876
+DLEK +A S+LQK+EEL SL+A+ ++ASFVQ SE+R+ GMES I
Sbjct: 793 EDLEKEHAELKVKVLELATERESSLQKIEELGVSLNAKDCEYASFVQFSESRMNGMESTI 852
Query: 877 SFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECXXXXXXXXXXX 936
LQ+E CR + Y+ ELD+A DA IEI + QK +QD EK+ SL+ E
Sbjct: 853 HHLQDENQCRVREYQVELDRAHDAHIEIIVLQKCLQDWLEKSSSLIAENQDIKEASKLLE 912
Query: 937 XXIHKLENENCEQQEEMRSLVDQIKVLRVQLYQLLEILEIDADHGCETKMEQDQSHQTLL 996
+ +LE EN +Q ++ S ++ IK+LR +YQ+L LEI G + +DQ + +
Sbjct: 913 KLVSELEEENIGKQVQIDSSINCIKILRTGIYQVLMKLEIIPGIGSGDENSRDQRN---M 969
Query: 997 DQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQS 1056
+ +L++MQ +L ++N IEN +L+ L QLK EA + TE+ L EE Q
Sbjct: 970 HDILNRLEDMQTMLLSIRDENQHSAIENLVLIEFLRQLKSEAVGIETEKKILEEELESQC 1029
Query: 1057 EQFVVLQREFPKLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNC 1116
+Q + E KL +N EL +V + + E+VL E+ H + +L+ LQ N
Sbjct: 1030 QQLSFSRDETQKLIFVNGELTTKVNQGVNREKVLMVEIEDFHRQVLQLRDDYTILQGDNN 1089
Query: 1117 KVLDEKKSLMKKVLDLQEEKHSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSE 1176
K LDEK L K L L+EEK LE++ ++ ETI QSNL + +DVI EKL L+E
Sbjct: 1090 KTLDEKAYLTKSTLQLEEEKCKLEDDISLLLSETIYQSNLIILLEDVILEKLSGAMKLNE 1149
Query: 1177 NLDKLGCINNELEEKVRLKDGKLEDVQMQNSLLKQSLEKSENELVAIGCVRDQLNCEIAN 1236
+LD+L + +LEE+VR KL+ + N L+ LEKS EL++ L EIAN
Sbjct: 1150 DLDRLSIVKCKLEEEVRELGDKLKSADIANFQLQVVLEKSNAELLSARSANVHLEHEIAN 1209
Query: 1237 GKDLLSRKEKELFVAEQILCSLQNERTELHMKVEDLTCKYDEAKIIQEDQGKQIRKLTED 1296
K +KEKEL A ++ +QNE++EL VE L C+Y EAK I+ED+ KQ+ +L D
Sbjct: 1210 VK---VQKEKELLEAMLMISIMQNEKSELSKAVEGLECRYKEAKAIEEDRDKQVLRLRGD 1266
Query: 1297 YDCQIKETRCIHELNMXXXXXXXXXXXXXXXTRYREESLYHELEKERKHAGLWETQATEL 1356
YD Q+K+ +E N+ + +E+L EL ER LWE+Q+ L
Sbjct: 1267 YDEQVKKNSHSNEANLKLEADLMNLLMELEEIKVEKENLNQELFTERNEIELWESQSATL 1326
Query: 1357 FSELQISSVCEVLRNEKAHELSRACENLEDRSNSNDIEINQLKEKANALECENGGLKAHL 1416
F ELQIS+V E L +EL AC+NLE RS D EI QLK + N LE N G +
Sbjct: 1327 FGELQISAVHETLLEGLTNELVEACKNLESRSTLKDREIEQLKGRVNNLEDANKGQNDLM 1386
Query: 1417 AASIPAVISLKDSIRSLENHTLLHKADNDEVKDP-DLVSHMQAEGCQETSED--QIATVL 1473
A+ LK+SI+SLE H +LH+ +N + LV + ++G E E +I +
Sbjct: 1387 CKYAQAIFLLKESIQSLEKHAMLHEFENGPATETASLVDN--SDGFLEIQELHLRIKAIE 1444
Query: 1474 DGFTDLQMRVKAIEKAIIEKESLAMLETLNANSKLEVAMRQIEELKCRSNLRQESGQTSK 1533
+ T ++ ++ + K + S +L + E+ + E + L Q S +S
Sbjct: 1445 EAITK-KLAMEEL-KTSSARRSRRRNGSLRKQNH-EIYSEETEMITKDIVLDQVSDCSSY 1501
Query: 1534 RVGR----KYEQEEPHDGPSDNLKLQKRTPEISEEGDEVMTKDIMLDQVSECSSHGLSRR 1589
+ K E + + S N K E S D++ D D + + + R
Sbjct: 1502 GISTRDILKIEDDHSLEAKSQNPPKGKSLSEESLVVDKLEISDRFTDPNKDANKRKVLER 1561
Query: 1590 GTMEADDQMLELWETADHGGSIDLKVAKSQKVARTPTDYHEVKAVKQQKSKNPTIESLVE 1649
+ +D Q L A + +KV +K + + +E +K Q ++ E +E
Sbjct: 1562 --LNSDLQKLSNLHVAVE--DLKIKVETEEKDEKGKENEYET--IKGQINE---AEEALE 1612
Query: 1650 KELGVDKLEISKRYSGSQKEGSQRKILERLDSDAQKLTNLQITVQDLKKKVETSEKGIKR 1709
K L +++ ++K +G ++ + ++ ++++ + + + +K+ + I+R
Sbjct: 1613 KLLSINRKLVTKVQNGFERSDGSKSSMDLDENESSRRRRISEQARRGSEKIGRLQLEIQR 1672
Query: 1710 KGIEYDTVKEQLEEAEEAIMKLLDVNRKLL 1739
+++ +K + + + A K+ D ++L
Sbjct: 1673 --LQFLLLKLEGDREDRAKAKISDSKTRIL 1700
|
|
| TAIR|locus:2130210 NET1B "Networked 1B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2132348 NET1C "AT4G02710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2064387 NET4B "AT2G30500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2041203 NET2D "AT2G22560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2024271 NET2B "AT1G09720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2142554 NET2C "AT5G10500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NI68 GOLGA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NMQ0 GOLGA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2161268 NET4A "Networked 4A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1849 | |||
| pfam07765 | 74 | pfam07765, KIP1, KIP1-like protein | 1e-42 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-19 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 5e-16 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 7e-16 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 7e-14 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-12 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-12 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-12 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-11 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-11 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 3e-11 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 4e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 6e-11 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 7e-11 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 9e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-10 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 7e-10 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-09 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 2e-09 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 3e-09 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-08 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 2e-08 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 3e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 8e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 9e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 5e-07 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 5e-07 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 7e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 9e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-06 | |
| TIGR02680 | 1353 | TIGR02680, TIGR02680, TIGR02680 family protein | 4e-06 | |
| PLN02939 | 977 | PLN02939, PLN02939, transferase, transferring glyc | 5e-06 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 7e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-05 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 2e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-05 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 4e-05 | |
| pfam05557 | 722 | pfam05557, MAD, Mitotic checkpoint protein | 5e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 7e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-04 | |
| PRK04778 | 569 | PRK04778, PRK04778, septation ring formation regul | 2e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-04 | |
| PLN02939 | 977 | PLN02939, PLN02939, transferase, transferring glyc | 3e-04 | |
| pfam06160 | 559 | pfam06160, EzrA, Septation ring formation regulato | 3e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 4e-04 | |
| TIGR04211 | 198 | TIGR04211, SH3_and_anchor, SH3 domain protein | 4e-04 | |
| pfam07888 | 546 | pfam07888, CALCOCO1, Calcium binding and coiled-co | 4e-04 | |
| COG3096 | 1480 | COG3096, MukB, Uncharacterized protein involved in | 4e-04 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 5e-04 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 5e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 6e-04 | |
| pfam09787 | 509 | pfam09787, Golgin_A5, Golgin subfamily A member 5 | 6e-04 | |
| pfam01496 | 707 | pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni | 6e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 7e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 9e-04 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 0.001 | |
| pfam01576 | 859 | pfam01576, Myosin_tail_1, Myosin tail | 0.001 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.002 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.002 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.002 | |
| PRK10929 | 1109 | PRK10929, PRK10929, putative mechanosensitive chan | 0.002 | |
| TIGR03185 | 650 | TIGR03185, DNA_S_dndD, DNA sulfur modification pro | 0.002 | |
| pfam05557 | 722 | pfam05557, MAD, Mitotic checkpoint protein | 0.003 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.003 | |
| TIGR04211 | 198 | TIGR04211, SH3_and_anchor, SH3 domain protein | 0.003 | |
| TIGR02680 | 1353 | TIGR02680, TIGR02680, TIGR02680 family protein | 0.004 | |
| TIGR02680 | 1353 | TIGR02680, TIGR02680, TIGR02680 family protein | 0.004 | |
| pfam13514 | 1118 | pfam13514, AAA_27, AAA domain | 0.004 |
| >gnl|CDD|116379 pfam07765, KIP1, KIP1-like protein | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 1e-42
Identities = 65/74 (87%), Positives = 71/74 (95%)
Query: 14 SWWWDSHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEMYYKKRPELMKLVE 73
SWWWDSHISPKNSKWL+ENL +MD KVK+M+KLIEEDADSFA+RAEMYYKKRPEL+ LVE
Sbjct: 1 SWWWDSHISPKNSKWLEENLQEMDSKVKEMLKLIEEDADSFAKRAEMYYKKRPELIALVE 60
Query: 74 EFYRAYRALAERYD 87
EFYRAYRALAERYD
Sbjct: 61 EFYRAYRALAERYD 74
|
This is a family of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions. It has also been suggested that the protein's coiled- coils allow it to dimerise in vivo. Length = 74 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein | Back alignment and domain information |
|---|
| >gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
| >gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein | Back alignment and domain information |
|---|
| >gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like | Back alignment and domain information |
|---|
| >gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|220402 pfam09787, Golgin_A5, Golgin subfamily A member 5 | Back alignment and domain information |
|---|
| >gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein | Back alignment and domain information |
|---|
| >gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein | Back alignment and domain information |
|---|
| >gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein | Back alignment and domain information |
|---|
| >gnl|CDD|205692 pfam13514, AAA_27, AAA domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1849 | |||
| PF07765 | 74 | KIP1: KIP1-like protein; InterPro: IPR011684 This | 100.0 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 99.94 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 99.94 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 99.93 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 99.9 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.73 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.7 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.68 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.67 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.66 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.63 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.55 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.53 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.51 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 99.44 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.43 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.38 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.31 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 99.13 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 99.1 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 99.08 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.93 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 98.9 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 98.86 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 98.85 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 98.82 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.77 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 98.73 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 98.73 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 98.66 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 98.66 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 98.65 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.61 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 98.6 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 98.57 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 98.52 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.5 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 98.48 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 98.37 | |
| PF07111 | 739 | HCR: Alpha helical coiled-coil rod protein (HCR); | 98.35 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 98.32 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 98.31 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 98.28 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 98.2 | |
| KOG0962 | 1294 | consensus DNA repair protein RAD50, ABC-type ATPas | 98.2 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 98.18 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 98.16 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 98.15 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 98.14 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 98.11 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 98.1 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 98.08 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 98.07 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 98.04 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 98.02 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 98.0 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 97.97 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 97.89 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 97.88 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 97.87 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 97.87 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 97.83 | |
| KOG4593 | 716 | consensus Mitotic checkpoint protein MAD1 [Cell cy | 97.77 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 97.76 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 97.66 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 97.61 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 97.54 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 97.53 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 97.53 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 97.53 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 97.49 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 97.47 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 97.44 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 97.35 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 97.25 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.21 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 97.16 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 97.11 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 97.08 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.01 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 96.92 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 96.9 | |
| PF09787 | 511 | Golgin_A5: Golgin subfamily A member 5; InterPro: | 96.81 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 96.8 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 96.77 | |
| KOG0962 | 1294 | consensus DNA repair protein RAD50, ABC-type ATPas | 96.77 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 96.69 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 96.6 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 96.56 | |
| PRK11637 | 428 | AmiB activator; Provisional | 96.43 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 96.41 | |
| COG5185 | 622 | HEC1 Protein involved in chromosome segregation, i | 96.36 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 96.33 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 96.2 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 96.19 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 95.94 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 95.92 | |
| KOG1003 | 205 | consensus Actin filament-coating protein tropomyos | 95.85 | |
| PRK11637 | 428 | AmiB activator; Provisional | 95.82 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 95.76 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 95.73 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 95.62 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 95.58 | |
| KOG4593 | 716 | consensus Mitotic checkpoint protein MAD1 [Cell cy | 95.57 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 95.34 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 95.27 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 95.01 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 94.98 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 94.78 | |
| KOG1003 | 205 | consensus Actin filament-coating protein tropomyos | 94.66 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 94.56 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 94.51 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 94.4 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 94.37 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 94.34 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 94.2 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 94.19 | |
| PF07111 | 739 | HCR: Alpha helical coiled-coil rod protein (HCR); | 94.1 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 94.06 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 93.83 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 93.74 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 93.68 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 93.3 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 93.16 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 93.1 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 93.05 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 92.88 | |
| PRK11281 | 1113 | hypothetical protein; Provisional | 92.78 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 92.32 | |
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 92.17 | |
| PF09787 | 511 | Golgin_A5: Golgin subfamily A member 5; InterPro: | 92.16 | |
| PRK09039 | 343 | hypothetical protein; Validated | 92.13 | |
| PRK09039 | 343 | hypothetical protein; Validated | 92.07 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 91.43 | |
| PF13514 | 1111 | AAA_27: AAA domain | 91.35 | |
| KOG0018 | 1141 | consensus Structural maintenance of chromosome pro | 91.22 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 91.21 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 91.09 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 90.8 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 90.65 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 90.31 | |
| KOG1853 | 333 | consensus LIS1-interacting protein NUDE [Cytoskele | 90.14 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 89.49 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 89.26 | |
| PF00769 | 246 | ERM: Ezrin/radixin/moesin family; InterPro: IPR011 | 89.21 | |
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 89.02 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 88.84 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 88.82 | |
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 88.77 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 88.24 | |
| PF15254 | 861 | CCDC14: Coiled-coil domain-containing protein 14 | 87.92 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 87.59 | |
| COG4477 | 570 | EzrA Negative regulator of septation ring formatio | 87.37 | |
| PF00769 | 246 | ERM: Ezrin/radixin/moesin family; InterPro: IPR011 | 87.36 | |
| PF04156 | 191 | IncA: IncA protein; InterPro: IPR007285 Chlamydia | 87.36 | |
| PF10267 | 395 | Tmemb_cc2: Predicted transmembrane and coiled-coil | 87.33 | |
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 87.29 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 87.13 | |
| PF06008 | 264 | Laminin_I: Laminin Domain I; InterPro: IPR009254 L | 86.85 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 86.46 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 86.16 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 86.11 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 85.82 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 85.44 | |
| KOG4302 | 660 | consensus Microtubule-associated protein essential | 84.61 | |
| PF04111 | 314 | APG6: Autophagy protein Apg6; InterPro: IPR007243 | 84.35 | |
| PF14073 | 178 | Cep57_CLD: Centrosome localisation domain of Cep57 | 84.16 | |
| PF15397 | 258 | DUF4618: Domain of unknown function (DUF4618) | 84.09 | |
| PF10481 | 307 | CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 | 84.01 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 83.84 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 82.98 | |
| PF15397 | 258 | DUF4618: Domain of unknown function (DUF4618) | 82.12 | |
| PRK15422 | 79 | septal ring assembly protein ZapB; Provisional | 82.12 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 81.81 | |
| PF04111 | 314 | APG6: Autophagy protein Apg6; InterPro: IPR007243 | 81.77 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 81.51 | |
| KOG4807 | 593 | consensus F-actin binding protein, regulates actin | 81.23 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 81.03 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 80.61 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 80.42 | |
| PF13166 | 712 | AAA_13: AAA domain | 80.37 | |
| KOG3850 | 455 | consensus Predicted membrane protein [Function unk | 80.15 | |
| PF09738 | 302 | DUF2051: Double stranded RNA binding protein (DUF2 | 80.07 |
| >PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=287.15 Aligned_cols=74 Identities=85% Similarity=1.444 Sum_probs=73.5
Q ss_pred ccccccCCCCCCchhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhh
Q 000217 14 SWWWDSHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYD 87 (1849)
Q Consensus 14 sww~~sHi~~~~skwL~~~l~~md~kvk~~lkli~ed~dsfa~raemyy~kRpeLi~~vee~yr~yr~Laeryd 87 (1849)
||||+|||+|++||||++||+|||.|||.||++|++||||||+||||||++||+||++|+||||+||+||||||
T Consensus 1 swww~sHi~~~~skWL~~~l~dmd~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAerYD 74 (74)
T PF07765_consen 1 SWWWDSHISPKQSKWLQENLSDMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAERYD 74 (74)
T ss_pred ChhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998
|
They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo []. |
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >PRK11281 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
| >PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
| >PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] | Back alignment and domain information |
|---|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF15254 CCDC14: Coiled-coil domain-containing protein 14 | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] | Back alignment and domain information |
|---|
| >PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion | Back alignment and domain information |
|---|
| >PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
| >PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells | Back alignment and domain information |
|---|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
| >KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >PF14073 Cep57_CLD: Centrosome localisation domain of Cep57 | Back alignment and domain information |
|---|
| >PF15397 DUF4618: Domain of unknown function (DUF4618) | Back alignment and domain information |
|---|
| >PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
| >PF15397 DUF4618: Domain of unknown function (DUF4618) | Back alignment and domain information |
|---|
| >PRK15422 septal ring assembly protein ZapB; Provisional | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >PF13166 AAA_13: AAA domain | Back alignment and domain information |
|---|
| >KOG3850 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 99.5 bits (248), Expect = 7e-21
Identities = 56/354 (15%), Positives = 128/354 (36%), Gaps = 8/354 (2%)
Query: 248 KLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLET 307
+ L L +++ E E+ E+ + E+ AEAE++ L++ +L
Sbjct: 833 NVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCE 892
Query: 308 EREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEA 367
E+ + Q + + E+ R A EL + + E + + +++AEK+
Sbjct: 893 EKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKK 952
Query: 368 AVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQ 427
+ + + E + + + K E ++ ++ KLT+E++ L +
Sbjct: 953 MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012
Query: 428 YQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESM 487
++ E K + + S + +LK E+ LE+ + L E +
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDL 1072
Query: 488 VQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAEL 547
+++ ++ E + +L + +Q R + + + + + L +L
Sbjct: 1073 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL 1132
Query: 548 QNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRE 601
++ + + L EE+E +K E L Q E+
Sbjct: 1133 ESEKAARNKAEKQKRDLSEELEALKTE--------LEDTLDTTATQQELRGSDY 1178
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
| >2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1849 | |||
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 98.99 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 98.55 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 98.43 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 96.8 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 96.2 | |
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 95.76 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 95.69 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 95.5 | |
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 94.96 | |
| 2fxo_A | 129 | Myosin heavy chain, cardiac muscle beta isoform; c | 94.52 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 94.47 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 94.3 | |
| 3u1c_A | 101 | Tropomyosin alpha-1 chain; anti-parallel coiled co | 93.65 | |
| 2efr_A | 155 | General control protein GCN4 and tropomyosin 1 Al; | 93.46 | |
| 3u59_A | 101 | Tropomyosin beta chain; muscle contraction, actin, | 93.09 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 91.91 | |
| 2efr_A | 155 | General control protein GCN4 and tropomyosin 1 Al; | 91.07 | |
| 2fxo_A | 129 | Myosin heavy chain, cardiac muscle beta isoform; c | 89.44 | |
| 3u1c_A | 101 | Tropomyosin alpha-1 chain; anti-parallel coiled co | 87.98 | |
| 3u59_A | 101 | Tropomyosin beta chain; muscle contraction, actin, | 87.73 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 87.12 | |
| 3ol1_A | 119 | Vimentin; structural genomics, PSI-2, protein stru | 87.12 | |
| 2jee_A | 81 | YIIU; FTSZ, septum, coiled-coil, cell division, ce | 86.24 | |
| 2ocy_A | 154 | RAB guanine nucleotide exchange factor SEC2; RAB, | 85.57 | |
| 2ocy_A | 154 | RAB guanine nucleotide exchange factor SEC2; RAB, | 85.28 | |
| 3bas_A | 89 | Myosin heavy chain, striated muscle/general contro | 83.93 | |
| 3ol1_A | 119 | Vimentin; structural genomics, PSI-2, protein stru | 83.09 | |
| 4gkw_A | 167 | Spindle assembly abnormal protein 6; double helix, | 82.66 | |
| 2v66_B | 111 | Nuclear distribution protein NUDE-like 1; structur | 80.53 | |
| 2v66_B | 111 | Nuclear distribution protein NUDE-like 1; structur | 80.16 | |
| 3mq7_A | 121 | Bone marrow stromal antigen 2; HIV, antiviral prot | 80.11 |
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
Probab=98.99 E-value=8.1e-06 Score=88.38 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000217 240 LTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSH 276 (1849)
Q Consensus 240 ~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~ 276 (1849)
+.||+.+..|+.+-+...-.+...-.++..++..+..
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~ 38 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQ 38 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777665555444444444444444444433
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
|---|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A | Back alignment and structure |
|---|
| >2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A | Back alignment and structure |
|---|
| >3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A | Back alignment and structure |
|---|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A | Back alignment and structure |
|---|
| >3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A | Back alignment and structure |
|---|
| >3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} | Back alignment and structure |
|---|
| >2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A | Back alignment and structure |
|---|
| >4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00