Citrus Sinensis ID: 000234

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760------1770------1780------1790------1800------1810------

MENRVGNSDGTAIPKKARSLDLKSLYKSGTSMESQHKDVKRKISKEDGDDEKSNKRKKSSKTVSISRLKNVDNSKRSVDGVYNGVVSSGSVDLKDLKCHNSCSGFNGISFSLDNSGVRIPKRKRGFVGRKKVEVDQVLKLPEHSCSKASIIDQAAKVTGDDSGTRDNSSRDSDPRVESSKDLGELFEPSKFKRKDSDDFKENWNGELHSARHLQEGECAIRSVVNHGESSLKKEKRRSKSNSNRHLKEGGHACYSVLNNGQSLLKKPNGVTNSNSGQCLKEENEGASHSVLNNSNSSLKESRRNNSKRKDSARHKKSVAKEAEHVINASGNVSNIKDSDHDRSVGKEAEPLVDASAKVSKRKDFSQDKISVAKEADILIDTSGKACDNLLEDEENLEENAAMMLSSRFDPSCTGFSSNGKSIVSPNGLSFLLSSGQGPGSHDSSLLDAAGRALRPRTHHREKGHSRKRRHYYEIFSGDLDGFWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWINLENERFKLLLLPSEVPGKAARRRSRKRVNSVDEGKLSLKSSKEKEKRNLNTEEENCMGSYMESEPIISWLARSTHRVKSSPTPAMKKQKISDLYPTSGPPFLANKVGNAHGLDADSKTSKFSSNSKLPDRFTDGGRGEESTSENPTCSKDSGLPIVYYRRRFRKTGSSLCSTSSGNNISSSTPASVTLLSSSIGEFWDFEEHDTFCKREVSNGASWSTTTGSGRVGLTIPLIDPKQARFKFSFPVLSILNYAFEAENLWLVHEVFLLHYGKLITMWPSVQLEMLFVDNVVGLRYFLFEDCLKQAVGYVFLVLSLFHQPNVLGKSSDRQLPVTSIRFKFSCFQNLSKQFVFAFYNFAEVKNSTWMYMDSKLKRHCLLTRQLPLSECTNDNIKVLQNGGNLLSTAAVCWDDSSTKGLQRISKQRTYLMGVPKQSARVKVGWCSSNLDKQRNLPPFVLSFTAAPSFFISLHLKLLMEHSGAGMSLHGQESTECAGSGCLIADESTYENNVPQCTLELNMSKSLDYNMMVMSKDAASHECSPAATSKLEAVSSSVCGDESWTRSPQICRNSSTNVAGTSASSQEPEQIGNEAIVPLQKLQYHDPKSEQCVLLPRPSSGDCDKTDTAYNSPLNSIRVEIPTFDQFEKHDREYHSVQCTTDLNWNMNGGIVPSLNPTAPRSTGHRNRSSSSFGYLAHGWSVEKADVAHSSFGSAPKKPRTQVSYSLPFGGYYSPKNRVNHQKGLPHMRIRRANEKRLSDVSRVSKKNLELLPCDANVLIVHGDKGWRECGAQIALELFEHNEWKLAVKLSGTTRFSYKAHQFLQPGSTNRYTHAMMWKGGKDWILEFPDRSQWALFKEMHEECYNRNIRAASVKNIPIPGVCLIEEFDDNVTEVAFVRSSSKYFRQVETDVEMALDPSRVLYDMDSDDEQWLLKIRSSSEADDCGLSEISEEIFEKIIDIFEKAAYSQQRDQFTSNEIEELMAGVGSMEAIKVIYEHWRQKRLKKGMPLIRHLQPPLWEIYQQQVKEWELAMSKPNSALPNGCQGKVAPMEKPPMFAFCLKPRGLEVPNKGSKQRAHRKFSVSGQSNTVTGDHDVFHTFGRRLNGFSFGDEKVLYPGHNYEYLDDSPLSQTSPRIFSPRVFSPRDAGIGCFSVSSDGIDRIQYQKLQRRKSKKFGMYESSYDPQLVASYNQRLMGKRNGIHRWNMGYSEWPSQRQFYSDGLQRHGPQMLDSSDLDEFKLRDASGAAKHARNMAKLKREKAQRLLYRADLAIHKAVNALMIAEAVKTSFDDVNSDG

cccccccccccccccccccccccHHHHccccHHHcccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccEEEEEEEEccccccEEEEcccccccEEEccccEEEEEEcccccccHHHHHHccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEEEccccccEEEEEEEEEcccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccHHHHHHHHHHcccccHHHccccccccccccEEEEEccccEEEcccEEEEEEcccccEEEEEEEccEEEEEcccccccccccccccccEEEEEccccEEEEcccccHHHHHHHHHHHHHHHcccccccccccccccEEEcccccccccccccccccccEEEcccHHHHccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc

cccccccccccEcccccccccHHHHHcccccHHHHHcccEEEccccccccccccccccccEEEEEEccccccccccccccEccccccccccccHEEccccccccccEEEEEcccccEEccccccccccccccccccEEEcccccccHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEEEEEcccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccEEEEccccccccccHHccccccccccccccccccccHHHHHcccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHcccEEEEEcccccHHEEEEEEEcccccccEEEEEccccEEEEEccHcEEEEEEcccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccccccEEEcccccEEcccccccEEEcccccccccccccccccccccccccccccccccccccHcEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHEHHHHHEHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEEcccccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccEEEEEEcccccccccccccccccccEEEcccccccccEEcccccccccccccccHEEHcccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEcccccccccccHcccccccccccccccHHHcccccccccccccccHHHHcccccccccccccccccccccccEccccHccccccHHHHccccccccccccccccccccccccccEEEEEcccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEEEEEEEEcccccEEcccEEEEEEcccccEEEEEEEcccEEEEEcHHHcccccccccccHHEEEEcccccEEEcccHHHHHHHHHHHHHHHHcccccccccEcccccEEEEccccccccccccccccccEEEEccccHHHcccccEEEEccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHccccccccccccccccccEEEEccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccEEEccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccc

menrvgnsdgtaipkkARSLDLKSLyksgtsmesqHKDVKRKiskedgddeksnkrkksskTVSISRlknvdnskrsvdgVYNGVVSsgsvdlkdlkchnscsgfngisfsldnsgvripkrkrgfvgrkkvevdqvlklpehscskaSIIDQAakvtgddsgtrdnssrdsdprvesskdlgelfepskfkrkdsddfkenwngeLHSARHLQEGECAIRSVVnhgesslkkekrrsksnsnrhlkegGHACYSVLNNgqsllkkpngvtnsnsgqclkeenegashsvlnnsnsslkesrrnnskrkdsaRHKKSVAKEAEHVINasgnvsnikdsdhdrsvgkeaeplvdasakvskrkdfsqdkisvaKEADILIDTSGKACDNLLEDEENLEENAAMMLssrfdpsctgfssngksivspnglsfllssgqgpgshdssLLDAAgralrprthhrekghsrkrrhYYEIFSGDLDGFWVLKRRIKvfwpldqcwyyglvddydkgkklhhvkyddrdeEWINLENERFKLlllpsevpgkaarrrsrkrvnsvdegklsLKSSKEKEKRNlnteeencmgsymesePIISWLARsthrvkssptpamkkqkisdlyptsgppflankvgnahgldadsktskfssnsklpdrftdggrgeestsenptcskdsglpivYYRRRfrktgsslcstssgnnissstpASVTLLSSSigefwdfeehdtfckrevsngaswstttgsgrvgltiplidpkqarfkfsfpVLSILNYAFEAENLWLVHEVFLLHYGKLITMWPSVQLEMLFVDNVVGLRYFLFEDCLKQAVGYVFLVLSLfhqpnvlgkssdrqlpvtsiRFKFSCFQNLSKQFVFAFYNFAEVKNSTWMYMDSklkrhclltrqlplsectndNIKVLQNGGNLLSTAAvcwddsstkglQRISKQRTYlmgvpkqsarvkvgwcssnldkqrnlppfvlsftaaPSFFISLHLKLLMEhsgagmslhgqestecagsgcliadestyennvpqctlELNMSKSLDYNMmvmskdaashecspaatsKLEAvsssvcgdeswtrspqicrnsstnvagtsassqepeqigneaivplqklqyhdpkseqcvllprpssgdcdktdtaynsplnsirveiptfdqfekhdreyhsvqcttdlnwnmnggivpslnptaprstghrnrssssfgylahgwsvekadvahssfgsapkkprtqvsyslpfggyyspknrvnhqkglphmrIRRAnekrlsdvsrvskknlellpcdanvlivhgdkgwrECGAQIALELFEHNEWKLAVKLSgttrfsykahqflqpgstnrytHAMMWKGGkdwilefpDRSQWALFKEMHEECYNRNIraasvknipipgvclieefddnvTEVAFVRSSSKYFRQVETDVemaldpsrvlydmdsdDEQWLLKIrssseaddcglsEISEEIFEKIIDIFEKAAYSQQRDQFTSNEIEELMAGVGSMEAIKVIYEHWRQKRLkkgmplirhlqppLWEIYQQQVKEWELamskpnsalpngcqgkvapmekppmfafclkprglevpnkgskqrahrkfsvsgqsntvtgdhdvfhtfgrrlngfsfgdekvlypghnyeylddsplsqtsprifsprvfsprdagigcfsvssdgidrIQYQKLQRRkskkfgmyessydpqlVASYNQRLmgkrngihrwnmgysewpsqrqfysdglqrhgpqmldssdldefklrdASGAAKHARNMAKLKREKAQRLLYRADLAIHKAVNALMIAEAVKTsfddvnsdg

menrvgnsdgtaipkkarslDLKSlyksgtsmesqhkdvkrkiskedgddeksnkrkkssktvsisrlknvdnskrsvdgvYNGVVSSGSVDLKDLKCHNSCSGFNgisfsldnsgvripkrkrgfvgrkkvevdqvlklpehscskasiidqaakvtgddsgtrdnssrdsdprvesskdlgelfepskfkrkdsddfKENWNGELHSARHLQEGECAIRSvvnhgesslkkekrrsksnsnrhlkeggHACYSVLNNGQSLLKKPNGVTNSNSGQCLKEenegashsvlnnsnsslkesrrnnskrkdsarhkksvAKEAehvinasgnvsnikdsdhdrsvgkeaeplvdasakvskrkdfsqdkisvakeadilidTSGKACDNLLEDEENLEENAAMMLSSRFDPSCTGFSSNGKSIVSPNGLSFLLSSGQGPGSHDSSLLDAagralrprthhrekghsrkrrhyyeifsgdldgfWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWINLENErfkllllpsevpgkaarrrsrkrvnsvdegklslksskekekrnlnteeencmgsymESEPIISWLARSTHRVkssptpamkkqkISDLYPTSGPPFLANKVGNAHGLDAdsktskfssnsklpdrftdggrgeestsenptcskdsglpIVYYRRRFRKTGSslcstssgnnissstpASVTLLSSSIGEFWDFEEHDTFCKREvsngaswstttgsgrvglTIPLIDPKQARFKFSFPVLSILNYAFEAENLWLVHEVFLLHYGKLITMWPSVQLEMLFVDNVVGLRYFLFEDCLKQAVGYVFLVLSLFHQPNVLGKSSDRQLPVTSIRFKFSCFQNLSKQFVFAFYNFAEVKNSTWMYMDSKLKRHCLLTRQLPLSECTNDNIKVLQNGGNLLSTAAVCWDDSSTKGLQRISKQrtylmgvpkqsarVKVGWCSSNLDKQRNLPPFVLSFTAAPSFFISLHLKLLMEHSGAGMSLHGQESTECAGSGCLIADESTYENNVPQCTLELNMSKSLDYNMMVMSKDAASHECSPAATSKLEAVSSSVCGDESWTRSPQICRNSSTNVAGTSASSQEPEQIGNEAIVPLQKLQYHDPKSEQCVLLPRPSSGDCDKTDtaynsplnsirvEIPTFDQFEKHDREYHSVQCTTDLNWNMNGGIVPSLNPTAPRSTGHRNRSSSSFGYLAHGWSVEKADVAHSsfgsapkkprtqVSYSLPfggyyspknrvnhqkglphmrirranekrlsdvsrvskknlellpcdaNVLIVHGDKGWRECGAQIALELFEHNEWKLAVKLSGTTRFSYKAHQflqpgstnrYTHAMMWKGGKDWILEFPDRSQWALFKEMHEECYNRNIRAASVKNIPIPGVCLIEEFDDNVTEVAFVRssskyfrqvetdvemaldPSRVLYDMDSDDEQWLLKIRssseaddcglSEISEEIFEKIIDIFEKAAYSQQRDQFTSNEIEELMAGVGSMEAIKVIYEHWRQKRLKKGMPLIRHLQPPLWEIYQQQVKEWELAMSKPNSALPNGCQGKVAPMEKPPMFAFCLKPRGLEVPnkgskqrahrkfsvsgqsntvtgdhDVFHTFGRRLNGFSFGDEKVLYPGHNYEYLDDSPLSQTSPRIFSPRVFSPRDAGIGCFsvssdgidriqyqklqrrkskkfgmyessydpqlVASYNQRLMGKRNGIHRWNMGYSEWPSQRQFYSDGLQRHGPQMLDSSDLDEFKLRDASGAAKHARNMAKLKREKAQRLLYRADLAIHKAVNALMIAEAvktsfddvnsdg

MENRVGNSDGTAIPKKARSLDLKSLYKSGTSMESQHKDVKRKISKEDGDDEKSNKRKKSSKTVSISRLKNVDNSKRsvdgvyngvvssgsvDLKDLKCHNSCSGFNGISFSLDNSGVRIPkrkrgfvgrkkvEVDQVLKLPEHSCSKASIIDQAAKVTGDDSGTRDNSSRDSDPRVESSKDLGELFEPskfkrkdsddfkENWNGELHSARHLQEGECAIRSVVNHGesslkkekrrsksnsnrhlkEGGHACYSVLNNGQSLLKKPNGVTNSNSGQCLKEENEGASHSVlnnsnsslkesrrnnskrkDSARHKKSVAKEAEHVINASGNVSNIKDSDHDRSVGKEAEPLVDASAKVSKRKDFSQDKISVAKEADILIDTSGKACdnlledeenleenAAMMLSSRFDPSCTGFSSNGKSIVSPNGLSFLLSSGQGPGSHDSSLLDAAGRALRPRTHHREKGHSRKRRHYYEIFSGDLDGFWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWINLENERFKLLLLPSEVPGKAARRRSRKRVNSVDEGklslksskekekRNLNTEEENCMGSYMESEPIISWLARSTHRVKSSPTPAMKKQKISDLYPTSGPPFLANKVGNAHGLDADSKTSKFSSNSKLPDRFTDGGRGEESTSENPTCSKDSGLPIVYYRRRFRKTgsslcstssgnnissstpasVTLLSSSIGEFWDFEEHDTFCKREVSNGASWSTTTGSGRVGLTIPLIDPKQARFKFSFPVLSILNYAFEAENLWLVHEVFLLHYGKLITMWPSVQLEMLFVDNVVGLRYFLFEDCLKQAVGYVFLVLSLFHQPNVLGKSSDRQLPVTSIRFKFSCFQNLSKQFVFAFYNFAEVKNSTWMYMDSKLKRHCLLTRQLPLSECTNDNIKVLQNGGNLLSTAAVCWDDSSTKGLQRISKQRTYLMGVPKQSARVKVGWCSSNLDKQRNLPPFVLSFTAAPSFFISLHLKLLMEHSGAGMSLHGQESTECAGSGCLIADESTYENNVPQCTLELNMSKSLDYNMMVMSKDAASHECSPAATSKLEAVSSSVCGDESWTRSPQICRNSSTNVAGTSASSQEPEQIGNEAIVPLQKLQYHDPKSEQCVLLPRPSSGDCDKTDTAYNSPLNSIRVEIPTFDQFEKHDREYHSVQCTTDLNWNMNGGIVPSLNPTAPRSTGHRNRSSSSFGYLAHGWSVEKADVAHSSFGSAPKKPRTQVSYSLPFGGYYSPKNRVNHQKGLPHMRIRRANEKRLSDVSRVSKKNLELLPCDANVLIVHGDKGWRECGAQIALELFEHNEWKLAVKLSGTTRFSYKAHQFLQPGSTNRYTHAMMWKGGKDWILEFPDRSQWALFKEMHEECYNRNIRAASVKNIPIPGVCLIEEFDDNVTEVAFVRSSSKYFRQVETDVEMALDPSRVLYDMDSDDEQWLLKIRSSSEADDCGLseiseeifekiidifekAAYSQQRDQFTSNEIEELMAGVGSMEAIKVIYEHWRQKRLKKGMPLIRHLQPPLWEIYQQQVKEWELAMSKPNSALPNGCQGKVAPMEKPPMFAFCLKPRGLEVPNKGSKQRAHRKFSVSGQSNTVTGDHDVFHTFGRRLNGFSFGDEKVLYPGHNYEYLDDSPLSQTSPRIFSPRVFSPRDAGIGCFSVSSDGIDRIQYQKLQRRKSKKFGMYESSYDPQLVASYNQRLMGKRNGIHRWNMGYSEWPSQRQFYSDGLQRHGPQMLDSSDLDEFKLRDASGAAKHARNMAKLKREKAQRLLYRADLAIHKAVNALMIAEAVKTSFDDVNSDG

******************************************************************************DGVYNGVVSSGSVDLKDLKCHNSCSGFNGISFSLDNSGVRIPKRKRGFVGRKKVEVDQVLKL****************************************************************************************************************CYSVL**********************************************************************************************************************DILID****************************************************************************************RHYYEIFSGDLDGFWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWINLENERFKLLLL******************************************************IISWL**********************************************************************************LPIVYYRRRFR***********************TLLSSSIGEFWDFEEHDTFCKREVSNGASWSTTTGSGRVGLTIPLIDPKQARFKFSFPVLSILNYAFEAENLWLVHEVFLLHYGKLITMWPSVQLEMLFVDNVVGLRYFLFEDCLKQAVGYVFLVLSLFHQPNVLGKSSDRQLPVTSIRFKFSCFQNLSKQFVFAFYNFAEVKNSTWMYMDSKLKRHCLLTRQLPLSECTNDNIKVLQNGGNLLSTAAVCWDDSSTKGLQRISKQRTYLMGVPKQSARVKVGWCSSNLDKQRNLPPFVLSFTAAPSFFISLHLKLLMEHSGAGM*L******ECAGSGCLIADESTYENNVPQCTLELN***************************************************************************************************************LNSIRVEIPTFDQFEKHDREYHSVQCTTDLNWNMNGGIV********************FGYLAHGWSVE***********************LPFGGYY**********************************NLELLPCDANVLIVHGDKGWRECGAQIALELFEHNEWKLAVKLSGTTRFSYKAHQFLQPGSTNRYTHAMMWKGGKDWILEFPDRSQWALFKEMHEECYNRNIRAASVKNIPIPGVCLIEEFDDNVTEVAFVRSSSKYFRQVETDVEMALDPSRVLYDMDSDDEQWLLKIR*****DDCGLSEISEEIFEKIIDIFEKAAYSQQRDQFTSNEIEELMAGVGSMEAIKVIYEHWRQKRLKKGMPLIRHLQPPLWEIYQQQVKEWELA***********************MFAFCLK***************************VTGDHDVFHTFGRRLNGFSFGDEKVLYPGHNYEYLDD*********IFSPRVFSPRDAGIGCFSVSSDGIDRIQYQKL*******FGMYESSYDPQLVASYNQRLMGKRNGIHRWNMGYSEWPS************************************************QRLLYRADLAIHKAVNALMIAEAVK**********

************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************GFWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWINLENER*********************************************************************************************************************************************************************************************************************************LIDPKQARFKFSFPVLSILNYAFEAENLWLVHEVFLLHYGKLITMWPSVQLEMLFVDNVVGLRYFLFEDCLKQAVGYVFLVLSLFHQPNVLGKSSDRQLPVTSIRFKFSCFQNLSKQFVFAFYNFAEVKNSTWMYMDSKLKRHCLLTRQLPLSECTNDNIKVLQNGGNLLSTAAVCW******************MGVPKQSARVKVGWCSSN****RNLPPFVLSFTAAPSFFISLHLKLLMEHSGAGMSLHGQ**TECA*******DEST*ENNVPQCTLELNMSKSLDYNMMVMSKDAAS******************************************************AIVPLQKLQ************************************************************************************************************************************************************************LPCDANVLIVHGDKGWRECGAQIALELFEHNEWKLAVKLSGTTRFSYKAHQFLQPGSTNRYTHAMMWKGGKDWILEFPDRSQWALFKEMHE**************IPIPGVCLIEEFDDNVTEVAFVRSSSKYFRQVETDVEMALDPSRVLYDMDSDDEQWLLKIR************ISEEIFEKIIDIFEKAAYSQQRDQFTSNEIEELMAGVGSMEAIKVIYEHWRQKRLKKGMPLIRHLQPPLWE***********************************MFAFCLKPR************************TVTGDHDVFHTFGRRLNGFSFGD*******************************************************************************************RWNMGY*****************************FKLRDASGAAKHARNMAKLKREKAQRLLYRADLAIHKAVNALMIAEAV***********

**********TAIPKKARSLDLKSLYKS*************************************SRLKNVDNSKRSVDGVYNGVVSSGSVDLKDLKCHNSCSGFNGISFSLDNSGVRIPKRKRGFVGRKKVEVDQVLKLPEHSCSKASIIDQAA*************************DLGELFEPSKFKRKDSDDFKENWNGELHSARHLQEGECAIRSVVN********************LKEGGHACYSVLNNGQSLLKKPNGVTNSNSGQCLKEENEGASHSVLNN****************************AEHVINASGNVSNIKDSDHDRSVGKEAEPL**************QDKISVAKEADILIDTSGKACDNLLEDEENLEENAAMMLSSRFDPSCTGFSSNGKSIVSPNGLSFLLS**********SLLDAAGRALR*************RRHYYEIFSGDLDGFWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWINLENERFKLLLLPSEV*********************SLKSSKEKEKRNLNTEEENCMGSYMESEPIISWLARS**************QKISDLYPTSGPPFLANKVGNAHGLDADSKTSKFSSNSKLPDR*****************SKDSGLPIVYYRRRFRKT*******************SVTLLSSSIGEFWDFEEHDTFCKREVSNGASWSTTTGSGRVGLTIPLIDPKQARFKFSFPVLSILNYAFEAENLWLVHEVFLLHYGKLITMWPSVQLEMLFVDNVVGLRYFLFEDCLKQAVGYVFLVLSLFHQPNVLGKSSDRQLPVTSIRFKFSCFQNLSKQFVFAFYNFAEVKNSTWMYMDSKLKRHCLLTRQLPLSECTNDNIKVLQNGGNLLSTAAVCWDDSSTKGLQRISKQRTYLMGVPKQSARVKVGWCSSNLDKQRNLPPFVLSFTAAPSFFISLHLKLLMEHSGA***********CAGSGCLIADESTYENNVPQCTLELNMSKSLDYNMMVMS**********************************ICRNS***************QIGNEAIVPLQKLQYHDPKSEQCVLLPRPSSGDCDKTDTAYNSPLNSIRVEIPTFDQFEKHDREYHSVQCTTDLNWNMNGGIVPSLNPT************SSFGYLAHGWSVEKADVAHSSFGSAPKKPRTQVSYSLPFGGYYSPKNRVNHQKGLPHMRIRRANEKRLSDVSRVSKKNLELLPCDANVLIVHGDKGWRECGAQIALELFEHNEWKLAVKLSGTTRFSYKAHQFLQPGSTNRYTHAMMWKGGKDWILEFPDRSQWALFKEMHEECYNRNIRAASVKNIPIPGVCLIEEFDDNVTEVAFVRSSSKYFRQVETDVEMALDPSRVLYDMDSDDEQWLLKIRSSSEADDCGLSEISEEIFEKIIDIFEKAAYSQQRDQFTSNEIEELMAGVGSMEAIKVIYEHWRQKRLKKGMPLIRHLQPPLWEIYQQQVKEWELAMSKPNSALPNGCQGKVAPMEKPPMFAFCLKPRGLEV*******************NTVTGDHDVFHTFGRRLNGFSFGDEKVLYPGHNYEYLDDSPLSQTSPRIFSPRVFSPRDAGIGCFSVSSDGIDRIQYQKLQRRKSKKFGMYESSYDPQLVASYNQRLMGKRNGIHRWNMGYSEWPSQRQFYSDGLQRHGPQMLDSSDLDEFKLRDASGAAKHARNMAKLKREKAQRLLYRADLAIHKAVNALMIAEAVKTS********

*****************RSLDLKSLYKSGTSMES******RKI****************SKTVSISRL********SV*******V***SVDLKDLKCHNSCSGFNGISFSLDNSGVRIPKRKRGFVGRKKVEVDQVLKLPEHSCSKASIIDQAAKVTG***********************GELFEPSKFKRKDS*********************************************************************************************************************************************************************************************************************************************************************************HYYEIFSGDLDGFWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWINLENERFKLLLLPS*****************************************************************************************************************************************SGLPIVYYRRRFRKTGSSLCS*****N*SSSTPASVTLLSSSIGE******************************GLTIPLIDPKQARFKFSFPVLSILNYAFEAENLWLVHEVFLLHYGKLITMWPSVQLEMLFVDNVVGLRYFLFEDCLKQAVGYVFLVLSLFHQPNVLGKSSDRQLPVTSIRFKFSCFQNLSKQFVFAFYNFAEVKNSTWMYMDSKLKRHCLLTRQLPLSECTNDNIKVLQNGGNLLSTAAVCWD********RISKQRTYLMGVPKQSARVKVGWCSSNLDKQRNLPPFVLSFTAAPSFFISLHLKLLMEHSGAGMSLHGQESTECAGSGCLIADESTYENNVPQCTLELNMSKSLDYNMMVMSKDAASHECSPAATSKLEAVSSSVCGDESWTRSPQICRNSSTNVAGTSASSQEPEQIGNEAIVPLQKLQYHDPKSEQCVLLPR**************SPLNSIRVEIPTFDQFEKH**EYHSVQCTTDLNWNMNGGIVPSLNPTAPRSTGH*N**SS*****AHGWSVEKADVAHSSFGSAPKKPRTQVSYSLPFGG*************************************LELLPCDANVLIVHGDKGWRECGAQIALELFEHNEWKLAVKLSGTTRFSYKAHQFLQPGSTNRYTHAMMWKGGKDWILEFPDRSQWALFKEMHEECYNRNIRAASVKNIPIPGVCLIEEFDDNVTEVAFVRSSSKYFRQVETDVEMALDPSRVLYDMDSDDEQWLLKIRSSSEADDCGLSEISEEIFEKIIDIFEKAAYSQQRDQFTSNEIEELMAGVGSMEAIKVIYEHWRQKRLKKGMPLIRHLQPPLWEIYQQQVKEWELAMSKPNSALPNGCQGKVAPMEKPPMFAFCLKPRGLEV**********RKFSV*GQSNTVTGDHDVFHTFGRRLNGFSFGDEKVLYPGHNYEYLDDSPLSQTSPRIFSPRVFSPRDAGIGCFSVSSDGIDRIQYQKLQRRKSKKFGMYESSYDPQLVASYNQRLMGKRNGIHRWNMGYSEWPSQRQFYSD*LQRHGPQMLDSSDLDEFKLRDASGAAKHARNMAKLKREKAQRLLYRADLAIHKAVNALMIAEAVKTS********

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MENRVGNSDGTAIPKKARSLDLKSLYKSGTSMESQHKDVKRKISKEDGDDEKSNKRKKSSKTVSISRLKNVDNSKRSVDGVYNGVVSSGSVDLKDLKCHNSCSGFNGISFSLDNSGVRIPKRKRGFVGRKKVEVDQVLKLPEHSCSKASIIDQAAKVTGDDSGTRDNSSRDSDPRVESSKDLGELFEPSKFKRKDSDDFKENWNGELHSARHLQEGECAIRSVVNHGESSLKKEKRRSKSNSNRHLKEGGHACYSVLNNGQSLLKKPNGVTNSNSGQCLKEENEGASHSVLNNSNSSLKESRRNNSKRKDSARHKKSVAKEAEHVINASGNVSNIKDSDHDRSVGKEAEPLVDASAKVSKRKDFSQDKISVAKEADILIDTSGKACDNLLEDEENLEENAAMMLSSRFDPSCTGFSSNGKSIVSPNGLSFLLSSGQGPGSHDSSLLDAAGRALRPRTHHREKGHSRKRRHYYEIFSGDLDGFWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWINLENERFKLLLLPSEVPGKAARRRSRKRVNSVDEGxxxxxxxxxxxxxxxxxxxxxCMGSYMESEPIISWLARSTHRVKSSPTPAMKKQKISDLYPTSGPPFLANKVGNAHGLDADSKTSKFSSNSKLPDRFTDGGRGEESTSENPTCSKDSGLPIVYYRRRFRKTGSSLCSTSSGNNISSSTPASVTLLSSSIGEFWDFEEHDTFCKREVSNGASWSTTTGSGRVGLTIPLIDPKQARFKFSFPVLSILNYAFEAENLWLVHEVFLLHYGKLITMWPSVQLEMLFVDNVVGLRYFLFEDCLKQAVGYVFLVLSLFHQPNVLGKSSDRQLPVTSIRFKFSCFQNLSKQFVFAFYNFAEVKNSTWMYMDSKLKRHCLLTRQLPLSECTNDNIKVLQNGGNLLSTAAVCWDDSSTKGLQRISKQRTYLMGVPKQSARVKVGWCSSNLDKQRNLPPFVLSFTAAPSFFISLHLKLLMEHSGAGMSLHGQESTECAGSGCLIADESTYENNVPQCTLELNMSKSLDYNMMVMSKDAASHECSPAATSKLEAVSSSVCGDESWTRSPQICRNSSTNVAGTSASSQEPEQIGNEAIVPLQKLQYHDPKSEQCVLLPRPSSGDCDKTDTAYNSPLNSIRVEIPTFDQFEKHDREYHSVQCTTDLNWNMNGGIVPSLNPTAPRSTGHRNRSSSSFGYLAHGWSVEKADVAHSSFGSAPKKPRTQVSYSLPFGGYYSPKNRVNHQKGLPHMRIRRANEKRLSDVSRVSKKNLELLPCDANVLIVHGDKGWRECGAQIALELFEHNEWKLAVKLSGTTRFSYKAHQFLQPGSTNRYTHAMMWKGGKDWILEFPDRSQWALFKEMHEECYNRNIRAASVKNIPIPGVCLIEEFDDNVTEVAFVRSSSKYFRQVETDVEMALDPSRVLYDMDSDDEQWLLKIRSSSEADDCGLSEISEEIFEKIIDIFEKAAYSQQRDQFTSNEIEELMAGVGSMEAIKVIYEHWRQKRLKKGMPLIRHLQPPLWEIYQQQVKEWELAMSKPNSALPNGCQGKVAPMEKPPMFAFCLKPRGLEVPNKGSKQRAHRKFSVSGQSNTVTGDHDVFHTFGRRLNGFSFGDEKVLYPGHNYEYLDDSPLSQTSPRIFSPRVFSPRDAGIGCFSVSSDGIDRIQYQKLQRRKSKKFGMYESSYDPQLVASYNQRLMGKRNGIHRWNMGYSEWPSQRQFYSDGLQRHGPQMLDSSDLDEFKLRDASGAAKHARNMAKLKREKAQRLLYRADLAIHKAVNALMIAEAVKTSFDDVNSDG

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1816	2.2.26 [Sep-21-2011]
O04716		1324	DNA mismatch repair prote	no	no	0.026	0.037	0.448	9e-06
P0CB22		1083	Histone-lysine N-methyltr	no	no	0.027	0.046	0.46	0.0003

>sp\|O04716\|MSH6_ARATH DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana GN=MSH6 PE=1 SV=2	Back alignment and function desciption

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 36/49 (73%)

Query: 484 VLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWINLENER 532
           V+ ++++V+WPLD+ WY G V  YDKG+  H V+Y+D +EE ++L  E+
Sbjct: 124 VVGKQVRVYWPLDKKWYDGSVTFYDKGEGKHVVEYEDGEEESLDLGKEK 172

Involved in post-replicative DNA-mismatch repair.
Arabidopsis thaliana (taxid: 3702)

>sp\|P0CB22\|ATX2_ARATH Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis thaliana GN=ATX2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1816
255551112		1705	hypothetical protein RCOM_0804080 [Ricin	0.914	0.974	0.549	0.0
224092384		1686	hypothetical protein POPTRDRAFT_561815 [	0.889	0.958	0.499	0.0
225430107		1679	PREDICTED: uncharacterized protein LOC10	0.781	0.845	0.556	0.0
296081935		1634	unnamed protein product [Vitis vinifera]	0.756	0.840	0.543	0.0
449437372		1476	PREDICTED: uncharacterized protein LOC10	0.720	0.886	0.516	0.0
356561949		1586	PREDICTED: uncharacterized protein LOC10	0.766	0.877	0.465	0.0
356554354		1564	PREDICTED: uncharacterized protein LOC10	0.743	0.863	0.470	0.0
356554356		1603	PREDICTED: uncharacterized protein LOC10	0.774	0.877	0.473	0.0
356561953		1578	PREDICTED: uncharacterized protein LOC10	0.756	0.870	0.471	0.0
449503564		1466	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.602	0.746	0.512	0.0

>gi\|255551112\|ref\|XP_002516604.1\| hypothetical protein RCOM_0804080 [Ricinus communis] gi\|223544424\|gb\|EEF45945.1\| hypothetical protein RCOM_0804080 [Ricinus communis]	Back alignment and taxonomy information

 Score = 1808 bits (4683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1022/1860 (54%), Positives = 1229/1860 (66%), Gaps = 199/1860 (10%)

Query: 1    MENRVGNSDGTAIPKKARSLDLKSLYKSGT-SMESQHKDVKRKISKEDGDDEKSNKRKKS 59
            MENR+GNS    IPKK+RSLDL+SLY+S   S E+Q K++KRK    D D+    KRKKS
Sbjct: 1    MENRIGNSHEAEIPKKSRSLDLRSLYQSSEGSKEAQIKNLKRK-GGSDVDNSGFEKRKKS 59

Query: 60   SKTVSISRLKNVD-NSKRSVDGVYNGVVSSGSVDLKDLK--------CHNSCSGFNGISF 110
             K VSIS  + V+ N  +S++ VYNG +SSGS D K++K         +NS SG + IS 
Sbjct: 60   RKAVSISSFRKVNGNGSKSLEEVYNGSLSSGSHDTKEIKSGSLNQQRVNNSNSGVSKISQ 119

Query: 111  SLDNSGVRIPKRKRGFVGRKKVEVD-QVLKLPEHSCSKASIIDQAAKVTGDDSGTRDNSS 169
            +L+ S  +IP+RKRGFVGRKKVE D QVLK  E S  K    DQ +K+T           
Sbjct: 120  NLEGSFDKIPRRKRGFVGRKKVEKDSQVLKPAEESRDKLET-DQISKLT----------- 167

Query: 170  RDSDPRVESSKDLGELFEPSKFKRKD-SDDFKENWNGELHSARHLQEGECAIRSVVNHGE 228
                      KD G++ E SK K+K  SDDFKEN                          
Sbjct: 168  ---------VKDTGKVVESSKVKQKKVSDDFKEN-------------------------- 192

Query: 229  SSLKKEKRRSKSNSNRHLKEGGHACYSVLNNG-QSLLKKPNGVTNSNSGQCLKEENEGAS 287
                   R S+ +S RH +E GH  +SV  +   SL K   G                  
Sbjct: 193  -------RISERSSGRHCEEDGHTGHSVARSVVLSLWKSQTG------------------ 227

Query: 288  HSVLNNSNSSLKESRRNNSKRKDSARHKKSVAKEAEHVINASGNVSNIKDSDHDRSVGKE 347
            HSV  + +SS K+S R  S      R +K++  E                   D+SV KE
Sbjct: 228  HSVEIDDDSSKKKSLRKRS------RKRKNLISE-------------------DKSVAKE 262

Query: 348  AEPLVDASAKVSKRKDFSQDKISVAKEADILIDTSGKACDNLLEDEENLEENAAMMLSSR 407
            AEP VD  A+VS                          CD   +DEENLEENAA MLSSR
Sbjct: 263  AEPSVD--AEVS--------------------------CDLHDDDEENLEENAARMLSSR 294

Query: 408  FDPSCTGFSSNGKS--IVSPNGLSFLLSSGQGPGSH--------DSSLLDAAGRALRPRT 457
            FD SCTGFSSN K+  + S NGLSFLLSSGQ   +H        +S+ LDAA R LRPR 
Sbjct: 295  FDTSCTGFSSNSKASPVPSTNGLSFLLSSGQEFATHGPNYISGSESASLDAAARILRPRK 354

Query: 458  HHREKGHSRKRRHYYEIFSGDLDGFWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVK 517
             H+EKG SRKRRHYYEIFSGDLD +WVL RRIKVFWPLDQ WYYGLV+DYD  +KLHHVK
Sbjct: 355  QHKEKGSSRKRRHYYEIFSGDLDAYWVLNRRIKVFWPLDQSWYYGLVNDYDNVRKLHHVK 414

Query: 518  YDDRDEEWINLENERFKLLLLPSEVPGKAARRRSRKRVNSVDEGKLSLKSSKEKEKRNLN 577
            YDDRDEEWINL++ERFKLLLLPSEVPGK  R+RSR +      GK  LK SKEK  R+  
Sbjct: 415  YDDRDEEWINLQDERFKLLLLPSEVPGKPQRKRSRTKEKISKGGKGKLKPSKEK--RDST 472

Query: 578  TEEENCMGSYMESEPIISWLARSTHRVKSSPTPAMKKQKISDLYPTSGPPFLA------N 631
             E+++ +G+YM+SEPIISWLARSTHRVKSSP  A+KKQK+S +  TS P  L       N
Sbjct: 473  IEDDSYVGNYMDSEPIISWLARSTHRVKSSPLRALKKQKVSGISLTSAPSLLPEEAVCRN 532

Query: 632  KVGNAHGLDADSKTSKFSSNSKLPDRFTDGGRGEESTSENPTCS-KDSGLPIVYYRRRFR 690
            +      L  D   S  S NS LP RFT GGR      E P  S KD+ LP+VYYRRRFR
Sbjct: 533  ECSEGDLLSRDK--SNLSGNSALPGRFTAGGR-----DEVPDISPKDNKLPVVYYRRRFR 585

Query: 691  KTGSSLCSTSSGNNISSSTPASVTLLSSSIGEFWDFEEHDTFCKR--------EVSNGAS 742
               S     S  N++S   P S T L  ++     FE+ D    R         +    +
Sbjct: 586  CANSMPRHASEDNHVSIGVPESDTSLVPAVYVSRAFEKQDISLARVDPDSDLGRLDTAEA 645

Query: 743  WSTTTGSGRVGLTIPLIDPKQARFKFSFPVLSILNYAFEAENLWLVHEVFLLHYGKLITM 802
               +   G + L   L++P+Q RF    PVLS+ N++F + + W  + + LL +G+L+T 
Sbjct: 646  LWLSDVRGLLRLNTELVEPRQFRFGLRIPVLSVHNFSFISGHTWFCNALLLLQHGRLMTT 705

Query: 803  WPSVQLEMLFVDNVVGLRYFLFEDCLKQAVGYVFLVLSLFHQPNVLGKSSDRQLPVTSIR 862
            WP V LEMLFVDN+VGLR+ LFE CLKQA+ +V  VL++FHQP   GK  D QLPVTSI+
Sbjct: 706  WPRVHLEMLFVDNIVGLRFLLFEGCLKQAIAFVLQVLTVFHQPTEHGKFVDLQLPVTSIK 765

Query: 863  FKFSCFQNLSKQFVFAFYNFAEVKNSTWMYMDSKLKRHCLLTRQLPLSECTNDNIKVLQN 922
            FKFSC Q+  KQ VFAFYNF+E+KNS WM++DS+LKRHCLLT+QLPLSECT DN+K LQN
Sbjct: 766  FKFSCIQDFRKQLVFAFYNFSELKNSKWMHLDSRLKRHCLLTKQLPLSECTYDNVKALQN 825

Query: 923  GGNLLSTAAVCWDDSSTKGLQRISKQRTYLMGVPKQSARVKVGWCSSNLDKQRN-LPPFV 981
            G + L  ++VC D +  KG  +  +Q   LMGV + S  V     SS  DK     PPF 
Sbjct: 826  GTSQLLDSSVCRDSARIKGPVKRFRQCVSLMGVSRDSNYVNSPSSSSRFDKSHGWFPPFA 885

Query: 982  LSFTAAPSFFISLHLKLLMEHSGAGMSLHGQESTECA-GSGCLIADESTYENNVPQCTLE 1040
            LSFTAAP+FF+SLHLKLLMEHS   +S    +S E    SG L AD+    ++    +L 
Sbjct: 886  LSFTAAPTFFLSLHLKLLMEHSVTHISFQDHDSVEHPENSGSLQADDCYSVDD----SLN 941

Query: 1041 LNMSKSLDYNMMVMSKDAASHECSPAATSKLEAVSSSVCGDESWTRSPQICRNSSTNVAG 1100
             +   + D N    S+D    EC   A ++  AV  SV     W +     +NS  + A 
Sbjct: 942  KHAETTPDNNSKGSSRDVDCEECLFCANTEPLAVGVSVNTVGDWMKPSPKHQNSDVH-AE 1000

Query: 1101 TSASSQEPEQIGNEAIVPLQKLQYHDPKSEQCVLLPRPSSGDCDKTDTAYNSPLNSIRVE 1160
            TSA S++  ++G + I  LQK + H  ++EQ   LP+PS       D A    LN IRVE
Sbjct: 1001 TSAFSKDSGELGRD-IASLQKWRCHHSEAEQNDALPKPS------VDRAL---LNGIRVE 1050

Query: 1161 IPTFDQFEKH-DREYHSVQCTTDLNWNMNGGIVPSLNPTAPRSTGHRNRSS-SSFGYLAH 1218
            IP+ +QF+K  D++    Q +TDL+WNMNGGI+PS NPTA RST HRNRS+ +S GY AH
Sbjct: 1051 IPSSNQFDKQVDKDLDGAQQSTDLSWNMNGGIIPSPNPTARRSTWHRNRSNLASVGYNAH 1110

Query: 1219 GWSVEKADVAHSSFGSAPKKPRTQVSYSLPFGGY-YSPKNRVNHQKGLPHMRIRRANEKR 1277
            GWS  + D   ++F + PKKPRTQVSY+LPFG + YS K++ + QKG+PH RIR ANEKR
Sbjct: 1111 GWSDGRGDFLQNNFRNGPKKPRTQVSYALPFGAFDYSSKSKGHSQKGIPHKRIRTANEKR 1170

Query: 1278 LSDVSRVSKKNLELLPCDANVLIVHGDKGWRECGAQIALELFEHNEWKLAVKLSGTTRFS 1337
             SDVSR S++NLELL C+ANVLI  GDKGWRE GAQ+ LEL +HNEWKLAVKLSGTT++S
Sbjct: 1171 SSDVSRGSERNLELLSCEANVLITLGDKGWREYGAQVVLELSDHNEWKLAVKLSGTTKYS 1230

Query: 1338 YKAHQFLQPGSTNRYTHAMMWKGGKDWILEFPDRSQWALFKEMHEECYNRNIRAASVKNI 1397
            YKAHQFLQPGSTNRYTHAMMWKGGKDWILEF DRSQWALFKEMHEECYNRNI AASVKNI
Sbjct: 1231 YKAHQFLQPGSTNRYTHAMMWKGGKDWILEFSDRSQWALFKEMHEECYNRNIHAASVKNI 1290

Query: 1398 PIPGVCLIEEFDDNVTEVAFVRSSSKYFRQVETDVEMALDPSRVLYDMDSDDEQWLLKIR 1457
            PIPGV LIEE DDN  EV F+R SSKYFRQVETDVEMAL+PSR+LYD+DSDDEQW+    
Sbjct: 1291 PIPGVRLIEEHDDNGIEVPFIRHSSKYFRQVETDVEMALNPSRLLYDIDSDDEQWISNNL 1350

Query: 1458 SSSEADDCGLSEISEEIFEKIIDIFEKAAYSQQRDQFTSNEIEELMAGVGSMEAIKVIYE 1517
            SS E  +    EISEEIFEK +D+FEKAAYSQ RDQFTS+EIEELMAGVGSMEAIKVI++
Sbjct: 1351 SSLEVFNSNSWEISEEIFEKTMDLFEKAAYSQHRDQFTSDEIEELMAGVGSMEAIKVIHD 1410

Query: 1518 HWRQKRLKKGMPLIRHLQPPLWEIYQQQVKEWELAMSKPNSALPNGCQGKVAPMEKPPMF 1577
            +W+QKR +KGMPLIRHLQPPLWE YQQQV+EWEL M+K N+AL NGC  K AP+EKPPMF
Sbjct: 1411 YWQQKRQRKGMPLIRHLQPPLWERYQQQVREWELKMTKSNTALLNGCHKKGAPIEKPPMF 1470

Query: 1578 AFCLKPRGLEVPNKGSKQRAHRKFSVSGQSNTVTGDHDVFHTFGRRLNGFSFGDEKVLYP 1637
            AFCLKPRGLE+PN+GSKQRA RK S++GQ NT+ GDHD FH +GRR NGF+ GDEKVLY 
Sbjct: 1471 AFCLKPRGLELPNRGSKQRAQRKVSITGQRNTLLGDHDSFHAYGRRSNGFASGDEKVLYQ 1530

Query: 1638 GHNYEYLDDSPLSQTSPRIFSPRVFSPRDA-GIGCFSVSSDGIDRIQYQKLQRRKSKKFG 1696
            GHNYE LDDSPLSQ      SPRVFSPRDA G G +SVSSD  +R   QKL R KS+K G
Sbjct: 1531 GHNYEPLDDSPLSQ-----ISPRVFSPRDAGGKGYYSVSSDRYERNHIQKLHRSKSRKPG 1585

Query: 1697 MYESSYDPQLVASYNQRLMGKRNGIHRWNMGYSEWPSQRQFYSDGLQRHGPQMLDSSDLD 1756
             Y   +D Q+VA+Y+++   KRNG HRWNMG+SEWPSQR +Y DG   H P+  + SDLD
Sbjct: 1586 AYVFPHDTQMVAAYDEQFFDKRNGFHRWNMGFSEWPSQRHYYLDGAPSHCPKQFNYSDLD 1645

Query: 1757 EFKLRDASGAAKHARNMAKLKREKAQRLLYRADLAIHKAVNALMIAEAVKTSFDDVNSDG 1816
            EF+LRDASGAA++ARNMAKLKREKAQRLLYRADLAIHKAV ALM AEA+K S +D+NSDG
Sbjct: 1646 EFRLRDASGAAQYARNMAKLKREKAQRLLYRADLAIHKAVVALMTAEAIKVSSEDLNSDG 1705

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224092384\|ref\|XP_002309585.1\| hypothetical protein POPTRDRAFT_561815 [Populus trichocarpa] gi\|222855561\|gb\|EEE93108.1\| hypothetical protein POPTRDRAFT_561815 [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225430107\|ref\|XP_002281922.1\| PREDICTED: uncharacterized protein LOC100264575 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296081935\|emb\|CBI20940.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449437372\|ref\|XP_004136466.1\| PREDICTED: uncharacterized protein LOC101216141 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356561949\|ref\|XP_003549238.1\| PREDICTED: uncharacterized protein LOC100789801 [Glycine max]	Back alignment and taxonomy information

>gi\|356554354\|ref\|XP_003545512.1\| PREDICTED: uncharacterized protein LOC100781230 [Glycine max]	Back alignment and taxonomy information

>gi\|356554356\|ref\|XP_003545513.1\| PREDICTED: uncharacterized protein LOC100781778 [Glycine max]	Back alignment and taxonomy information

>gi\|356561953\|ref\|XP_003549240.1\| PREDICTED: uncharacterized protein LOC100792436 [Glycine max]	Back alignment and taxonomy information

>gi\|449503564\|ref\|XP_004162065.1\| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101228859 [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1816
TAIR\|locus:2125682		1540	AT4G32620 [Arabidopsis thalian	0.290	0.342	0.529	4e-286
TAIR\|locus:2180218		766	AT5G04670 "AT5G04670" [Arabido	0.143	0.340	0.351	4.6e-38
TAIR\|locus:2116787		873	AT4G31880 [Arabidopsis thalian	0.055	0.115	0.311	1.1e-06
TAIR\|locus:2025712		774	AT1G80810 [Arabidopsis thalian	0.039	0.093	0.402	4.5e-06
TAIR\|locus:2183750		395	AT5G10950 "AT5G10950" [Arabido	0.026	0.124	0.469	9.7e-05

TAIR\|locus:2125682 AT4G32620 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1421 (505.3 bits), Expect = 4.0e-286, Sum P(5) = 4.0e-286
 Identities = 293/553 (52%), Positives = 379/553 (68%)

Query:  1145 KTDTAYNSPLNSIRVEIPTFDQFEKHDREYHSVQCTTDLNWNMNGGIVPSLNPTAPRSTG 1204
             K +T  N  +N I +++P  D     D E  + Q +++L  N+ G    S   TAPRS  
Sbjct:   902 KHETRSNVSVNGISIQVPISD-----DCEDGTPQ-SSNLALNIQGSSNSSPKATAPRSMW 955

Query:  1205 HRNRSSSSFGYLAHGWSVEKADVAHSSFGSAPKKPRTQVSYSLPFGGYYSPKNRVNHQKG 1264
             +R++SS + G+L+HGWS  K D  +++  + PKK RTQVSYSLP GG  S +N+ +  KG
Sbjct:   956 NRSKSSLN-GHLSHGWSDSKGDFLNTNLANGPKKRRTQVSYSLPSGGSDS-RNKGSLLKG 1013

Query:  1265 LPHMRIRRANEKRLSDVSRVSKKNLELLPCDANVLIVHGDKGWRECGAQIALELFEHNEW 1324
             +P+ RIRR+     +DV++  +K+LE   CDANVL+  GD+GWRE GAQI LE F++NEW
Sbjct:  1014 MPNKRIRRST----ADVTKGIQKDLESSLCDANVLVTLGDRGWREYGAQIFLEPFDNNEW 1069

Query:  1325 KLAVKLSGTTRFSYKAHQFLQPGSTNRYTHAMMWKGGKDWILEFPDRSQWALFKEMHEEC 1384
             +LAVK+SGTT++S++AHQFLQPGS NR+THAMMWKGGKDW LEFPDR QW LFKEMHEEC
Sbjct:  1070 RLAVKISGTTKYSHRAHQFLQPGSVNRFTHAMMWKGGKDWTLEFPDRGQWFLFKEMHEEC 1129

Query:  1385 YNRNIRAASVKNIPIPGVCLIEEFDDNVTEVAFVRSSSKYFRQVETDVEMALDPSRVLYD 1444
             YNRN RAA V+NIPIPG+ +IE  + + TE  F+RSSSKYFRQ ETDVEMALDPSRV+YD
Sbjct:  1130 YNRNTRAALVRNIPIPGIRMIERDNFDGTETEFIRSSSKYFRQTETDVEMALDPSRVMYD 1189

Query:  1445 MDSDDEQWLLKIRSSSEADDCGLXXXXXXXXXXXXXXXXXAAYSQQRDQFTSNEIEELMA 1504
             MDSDDEQ LL+IR  S A++ G                  A++ +QRD FT  EI+EL A
Sbjct:  1190 MDSDDEQCLLRIRECSSAENSGSCEITEDMFEKAMDMFEKASFVKQRDNFTLIEIQELTA 1249

Query:  1505 GVGSMEAIKVIYEHWRQKRLKKGMPLIRHLQPPLWEIYQQQVKEWELAMSKPNSALPNGC 1564
             GVGS+EA++ IYE WR KR +KGMPLIRHLQPPLWE YQ+++K+WEL MSK N+  PN C
Sbjct:  1250 GVGSLEAMETIYELWRTKRQRKGMPLIRHLQPPLWEKYQRELKDWELVMSKANT--PNSC 1307

Query:  1565 --QGKVAPMEKPPMFAFCLKPRGLEVPNKGSKQRAHRKFSVSGQSNTVTGDHDVFHTF-G 1621
               Q K +P EKP MFAFC KPRGLEV ++G+K R+ +K SV  Q ++  GD+D  ++  G
Sbjct:  1308 GSQKKQSPTEKPAMFAFCFKPRGLEVKHRGTKHRSQKKLSVYAQHSSALGDYDGCNSSAG 1367

Query:  1622 RRLNGFSFGDEKVLYPGHNYEYLDDSPLSQTSPRIFSPRVFSPRDAGIGCFSVSSDGIDR 1681
             RR  GF  GDE+ LY   +YE+ ++  +         P  +SPRD G+G FS   +G  R
Sbjct:  1368 RRPVGFVSGDERFLYSNQSYEHSNEFSVH--------PGTYSPRDLGMGYFSSGGNGYHR 1419

Query:  1682 IQYQKLQRRKSKK 1694
                 K QR   K+
Sbjct:  1420 NHQNKSQRINGKR 1432

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

TAIR\|locus:2180218 AT5G04670 "AT5G04670" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2116787 AT4G31880 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2025712 AT1G80810 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2183750 AT5G10950 "AT5G10950" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00061774	hypothetical protein (1686 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1816
pfam10513		145	pfam10513, EPL1, Enhancer of polycomb-like	4e-22

>gnl\|CDD\|220792 pfam10513, EPL1, Enhancer of polycomb-like	Back alignment and domain information

 Score = 94.0 bits (234), Expect = 4e-22
 Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 15/150 (10%)

Query: 1345 QPGSTNRYTHAMMWKGGKDWILEF-PDRSQWALFKEMH-EECYNRNIRAASVKN------ 1396
            +P   +      +++      LE   D     +   +  EE + ++++            
Sbjct: 2    RPRRLSIKKPLPVFREEDLPDLEKSADIEVPQIPTGVEKEEEWEKHLQVPISAAQVAKKL 61

Query: 1397 -IPIPGVCLIEEFDDNVTEVAFVRSSSKYFRQVETDVEMALDPSRVLYDMDSDDEQWLLK 1455
             IP P    IE++D       F R  S Y R  E  VE  LD S V YDMD +DE WL +
Sbjct: 62   YIPTPEAREIEDYDK-PYAPKFKRPKS-YIRFSEKSVEE-LD-SGVEYDMDEEDEAWLEE 117

Query: 1456 IRSSSEADDCGLSEISEEIFEKIIDIFEKA 1485
            +    +  + GL+ +SE+ FEK++D  EK 
Sbjct: 118  LNE--KRKEEGLAPLSEDDFEKLMDRLEKE 145

This is a family of EPL1 (Enhancer of polycomb-like) proteins. The EPL1 protein is a member of a histone acetyltransferase complex which is involved in transcriptional activation of selected genes. Length = 145

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1816
PF10513		160	EPL1: Enhancer of polycomb-like; InterPro: IPR0195	99.77
PF09465		55	LBR_tudor: Lamin-B receptor of TUDOR domain; Inter	98.88
KOG0955		1051	consensus PHD finger protein BR140/LIN-49 [General	98.69
KOG2261		716	consensus Polycomb enhancer protein, EPC [Transcri	98.58
KOG0954		893	consensus PHD finger protein [General function pre	97.14
smart00333		57	TUDOR Tudor domain. Domain of unknown function pre	97.14
smart00743		61	Agenet Tudor-like domain present in plant sequence	96.87
cd04508		48	TUDOR Tudor domains are found in many eukaryotic o	96.82
COG5141		669	PHD zinc finger-containing protein [General functi	96.67
KOG2261		716	consensus Polycomb enhancer protein, EPC [Transcri	96.45
KOG4675		273	consensus Uncharacterized conserved protein, conta	95.45
PF09038		122	53-BP1_Tudor: Tumour suppressor p53-binding protei	94.25
PF06003		264	SMN: Survival motor neuron protein (SMN); InterPro	91.72

>PF10513 EPL1: Enhancer of polycomb-like; InterPro: IPR019542 This domain is found at the N-terminal of EPL1 (Enhancer of polycomb-like) proteins	Back alignment and domain information

Probab=99.77  E-value=3.5e-19  Score=181.18  Aligned_cols=151  Identities=28%  Similarity=0.401  Sum_probs=99.4

Q ss_pred             eEEEE--EcCcccccccchhccccCCCccccc--ccccccCCCcccccCCCchhhhhh--HHhHHHhhccccCCcCCCCc
Q 000234         1324 WKLAV--KLSGTTRFSYKAHQFLQPGSTNRYT--HAMMWKGGKDWILEFPDRSQWALF--KEMHEECYNRNIRAASVKNI 1397 (1816)
Q Consensus      1324 wRIsI--KLdgiTrys~kAqqimepcnSNReN--Ha~~w~g~k~WkLEFpDksqw~lF--KEmheEC~eRNsrAsSvKeI 1397 (1816)
                      .+|.|  +|.++...+.......+ +++|+.+  +.++-...+.-.+   .++.|..-  +-+...--..+........|
T Consensus         4 ~~ld~~~~l~I~~~~d~~~~~~~~-~~~~~~~~~~~~~~gv~~~~~~---~~~e~e~~~q~~~~~~~~~~~~~~~~~~~I   79 (160)
T PF10513_consen    4 RRLDIKKPLPIFREEDLDDLDESE-DSSNKNQAVPQSPTGVEKEEKL---SKQEWEKHLQKPISASQNSKSKKKKEKKKI   79 (160)
T ss_pred             CCCCCCCCeeEEechhcccccccc-cccccccccccccCCccchhhc---cccccccccccccchhhhhhcccccccccC
Confidence            45666  88888877777666666 7777664  2222222222111   11111000  00000000000001134679


Q ss_pred             CCCcceeecCCCCCccccCcccCCCCcEEeeccchhhccCCCccCCCCChhHHHHHHHHhcCCccccCCCCCCCHHHHHH
Q 000234         1398 PIPGVCLIEEFDDNVTEVAFVRSSSKYFRQVETDVEMALDPSRVLYDMDSDDEQWLLKIRSSSEADDCGLSEISEEIFEK 1477 (1816)
Q Consensus      1398 PIP~VReVEdYDe~y~~~PFsRpPsSYIRfietdVEeALD~e~VEYDMDSEDEEWLeq~NkkrkrkndG~~qLSEDdFEk 1477 (1816)
                      |+|.++.++ |+..+. .+|.+ |.+||||+...++++ +. .|+||||+||+.||+.+|++  ++..|..+||++.||.
T Consensus        80 P~P~~~~~~-~~~~~~-~~f~~-p~~yi~~~~~~~e~~-~~-~veYDmDeeD~~wL~~~N~~--r~~~~~~~ls~~~FE~  152 (160)
T PF10513_consen   80 PTPSVRVVD-YEKPYS-PPFKR-PSSYIRFSEKSVEDL-DE-GVEYDMDEEDEEWLELLNKK--RKSDGLEPLSEEDFEI  152 (160)
T ss_pred             CCCceEEec-CcCCCC-CcccC-CccccccccCCHHHh-cc-CcCCCCchHHHHHHHHHHHH--hhhcCCCCCCHHHHHH
Confidence            999999888 999997 78999 999999996556653 32 69999999999999999995  3457788999999999


Q ss_pred             HHHHHHhh
Q 000234         1478 IIDIFEKA 1485 (1816)
Q Consensus      1478 MMDRLEKe 1485 (1816)
                      |||+|||+
T Consensus       153 ~md~lEke  160 (160)
T PF10513_consen  153 IMDRLEKE  160 (160)
T ss_pred             HHHHHhCC
Confidence            99999996

The EPL1 protein is a member of a histone acetyltransferase complex which is involved in transcriptional activation of selected genes []. It is also present at the N terminus of Jade family proteins.

>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane	Back alignment and domain information

>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]	Back alignment and domain information

>KOG2261 consensus Polycomb enhancer protein, EPC [Transcription]	Back alignment and domain information

>KOG0954 consensus PHD finger protein [General function prediction only]	Back alignment and domain information

>smart00333 TUDOR Tudor domain	Back alignment and domain information

>smart00743 Agenet Tudor-like domain present in plant sequences	Back alignment and domain information

>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains	Back alignment and domain information

>COG5141 PHD zinc finger-containing protein [General function prediction only]	Back alignment and domain information

>KOG2261 consensus Polycomb enhancer protein, EPC [Transcription]	Back alignment and domain information

>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]	Back alignment and domain information

>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix	Back alignment and domain information

>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1816
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 65.6 bits (159), Expect = 1e-10
 Identities = 81/616 (13%), Positives = 168/616 (27%), Gaps = 201/616 (32%)

Query: 1213 FGYLAHGWSVEKADVAHSSFGSAPKKPRTQVSYSLPFGGYYSPKNRV--NHQKGLPHMRI 1270
            + +L      E             ++P      S+    Y   ++R+  ++Q    +   
Sbjct: 91   YKFLMSPIKTE------------QRQP------SMMTRMYIEQRDRLYNDNQVFAKY--- 129

Query: 1271 RRANEKRLSDVSRVSKKNLELLPCDANVLIVHGDKGWRECGAQI-ALELFEHNEWKLAVK 1329
               N  RL    ++ +  LEL P  A  +++ G  G    G    AL++     +K+  K
Sbjct: 130  ---NVSRLQPYLKLRQALLELRP--AKNVLIDGVLG---SGKTWVALDVC--LSYKVQCK 179

Query: 1330 LSG-----TTRFSYKAHQFLQPGSTNRYTHAMMWKGGKDWILEFPDRSQWA-------LF 1377
            +         +        L+      Y     W    D       R           L 
Sbjct: 180  MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 1378 KEMHEECYN--RNIRAASVKNIPIPGVCLIEEFDDN----VT----EVAFVRSSSKYFRQ 1427
             + +E C     N++ A               F+ +    +T    +V    S++     
Sbjct: 240  SKPYENCLLVLLNVQNAKA----------WNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 1428 VETDVEMALDPSRVLYDMDSDDEQWLLKIRSSSEADDCGLSEISEEIFEKIIDIFEKAAY 1487
                  M L P          DE                     + +  K +D       
Sbjct: 290  SLDHHSMTLTP----------DE--------------------VKSLLLKYLDC------ 313

Query: 1488 SQQRDQFTSNEIEEL--MAGVGSMEAIKVI----------YEHWRQ---KRLKKGMPL-I 1531
                        ++L       +   + +I          +++W+     +L   +   +
Sbjct: 314  ----------RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 1532 RHLQPPLW-EIYQQQVKEWELAMSKPNSALP--------------------NGCQGKVAP 1570
              L+P  + +++        L++  P++ +P                    N        
Sbjct: 364  NVLEPAEYRKMF------DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 1571 MEKPPMFAFCLKPRGLEVPNKGSKQRA-HRKF------SVSGQSNTVTGDHD---VFHTF 1620
             ++P      +    LE+  K   + A HR          +  S+ +   +     +   
Sbjct: 418  EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 1621 GRRLNGFSFGDEKVLYPGHNYEYLDDSPLSQTSPRIFSPRVFSPRDAGIGCFSVSSDGID 1680
            G  L      +   L+      +LD   L Q        ++     A     S+ +    
Sbjct: 478  GHHLKNIEHPERMTLFR---MVFLDFRFLEQ--------KIRHDSTAWNASGSILNTLQQ 526

Query: 1681 RIQYQKLQRRKSKKFGMYESSY-------DPQLVASYNQR-----LMGKRNGIHRWNMGY 1728
               Y+        K+    ++        +  L+ S         LM +   I      +
Sbjct: 527  LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI------F 580

Query: 1729 SEWPSQRQFYSDGLQR 1744
             E  + +Q     +QR
Sbjct: 581  EE--AHKQ-----VQR 589

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1816
d2d9ta1		60	Tudor domain-containing protein 3, TDRD3 {Mouse (M	95.49
d1mhna_		59	Survival motor neuron protein 1, smn {Human (Homo	94.82
d2diga1		55	Lamin-b receptor {Human (Homo sapiens) [TaxId: 960	94.69
d2diqa1		97	Tudor and KH domain-containing protein TDRKH {Huma	90.75
d2hqxa1		90	P100 co-activator, SND1 {Human (Homo sapiens) [Tax	84.35

>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor domain-containing protein 3, TDRD3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.49  E-value=0.019  Score=31.65  Aligned_cols=47  Identities=19%  Similarity=0.153  Sum_probs=42.0

Q ss_pred             CCCCEEEEECCCCCCEEEEEEEEEECCCCEEEEECCC-CCCEEEECCC
Q ss_conf             4475389973799955868988741899718998458-9800351476
Q 000234          484 VLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDD-RDEEWINLEN  530 (1816)
Q Consensus       484 LVGrRVkVfWPlD~~WY~GtVtsYDp~tkkH~V~YDD-GDeE~L~Ls~  530 (1816)
                      -||..+...|+.|+.||.++|...++..+...|.|.| |..|.+.+..
T Consensus         4 kvG~~c~A~~~~D~~wYRA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~   51 (60)
T d2d9ta1           4 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSN   51 (60)
T ss_dssp             CTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGG
T ss_pred             CCCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCEEEECHHH
T ss_conf             769999999987897999999998278999999998799989983899

PyMOL of d2d9ta1

>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure