Citrus Sinensis ID: 000248
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1789 | 2.2.26 [Sep-21-2011] | |||||||
| O94387 | 1944 | Uncharacterized ATP-depen | yes | no | 0.249 | 0.229 | 0.247 | 2e-24 | |
| Q00416 | 2231 | Helicase SEN1 OS=Saccharo | yes | no | 0.236 | 0.189 | 0.259 | 2e-21 | |
| Q92355 | 1687 | Helicase sen1 OS=Schizosa | no | no | 0.270 | 0.286 | 0.243 | 1e-20 | |
| B6SFA4 | 818 | Probable helicase MAGATAM | no | no | 0.213 | 0.466 | 0.263 | 4e-20 | |
| A2AKX3 | 2646 | Probable helicase senatax | yes | no | 0.244 | 0.165 | 0.248 | 7e-18 | |
| Q86AS0 | 967 | Probable helicase DDB_G02 | no | no | 0.135 | 0.250 | 0.270 | 2e-17 | |
| Q7Z333 | 2677 | Probable helicase senatax | yes | no | 0.244 | 0.163 | 0.236 | 1e-14 |
| >sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A10.10c PE=3 SV=1 | Back alignment and function desciption |
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Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 147/593 (24%), Positives = 257/593 (43%), Gaps = 147/593 (24%)
Query: 1212 PKLDDWYKPILEIDYFATVGLASSREDENRVHCKLKEVPVCFQSPEQFVSIFRPLVLEEF 1271
P + ++YK IL + A AS+ V + + + + +F+P++ E
Sbjct: 1057 PDVQEFYKVILGWNPLADSFSASN------VEMQCVQAKFTYNDSNAYEKVFKPMLFHEC 1110
Query: 1272 KAQLHSSFLEMSSWEDMYYGSLSVLSVER--VDDFHLVRFVHDDNDSVTSKIFSENDLVL 1329
AQ+ S+ E+ Y + ++ R VD+F + F V+ S+ D+ L
Sbjct: 1111 WAQVKSAV------EEKQYPPIDLILNTRSTVDNFVDIYFTSCSPTEVS--FLSDTDICL 1162
Query: 1330 LTRVSPQKTPHDVHMVGKVERRERDNNRRSSILLIRFYLQNGSVRLNQARRNLLERSKWH 1389
L++ ++ + + + S L +R ++ S+ L + N+ ++
Sbjct: 1163 LSKSQSSGDTNNPKSFQLCKIQSISRKKESLELCLRMNIE--SIDLQEYAPNI----RFT 1216
Query: 1390 ATLIMSITPQLREFHALSSLKSIPLLPIILNPVNVSR---GYNESRELDLGKLSQLQQIL 1446
A + + T LREF AL SL+ +PL IL+ NV+R + + ++ Q+I+
Sbjct: 1217 AQKLFNATTSLREFAALKSLRHLPLSQRILD-ANVTRLPSNFTDDKK---------QKIM 1266
Query: 1447 KT-SFNESQLQAI---SVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTS 1502
K+ NE Q AI SV G + LIQGPPGTGKT+TI+ ++ A+L TS
Sbjct: 1267 KSYGVNEPQAYAIYASSVNDGFT----------LIQGPPGTGKTKTILGMIGAVL---TS 1313
Query: 1503 PKSHLKQNYSSCINSRPKIGQSAAIARAWQDAALARQINEDSERDKKSSESSVRARVLIC 1562
L+ N GQ+ +K+S++ ++LIC
Sbjct: 1314 SSQGLQFNVP---------GQT-----------------------RKTSKN----KILIC 1337
Query: 1563 AQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLVDHRLAEE 1622
A SNAA+DE++ RI K G+Y +G + P ++RVG F D++ H
Sbjct: 1338 APSNAAIDEILLRI-KAGVYDHEGIKFFPKVIRVG------------FGDSISVH----- 1379
Query: 1623 RMHLTDPKNEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGNSDPKNMLDDEVHKGDDV 1682
+ TL E+++ ++ K+ + +SD + D + K D +
Sbjct: 1380 ------------AKEFTLE---EQMIKQMELTNLKKDQEANNSSDTRKKYDSIIKKRDSL 1424
Query: 1683 KLSDVE-----------LEAKLRKLYEQKKQIYRELGVAQVQEKKSYEETKALKHKLRKS 1731
+ D+E LEA+LR++ +QK + + L + +++ + LK +++
Sbjct: 1425 R-EDLEKFRSTGKNSSILEAQLREITKQKNMLEQSLDDMRERQRSTNRNLDVLKKQIQNQ 1483
Query: 1732 ILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQVV 1784
+L+EA+IV TLS G +L + F V+IDEAAQ V
Sbjct: 1484 LLQEADIVCATLSASGHELL--------------LNAGLTFRTVIIDEAAQAV 1522
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: - |
| >sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEN1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sen1 PE=1 SV=1 | Back alignment and function description |
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| >sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2 SV=1 | Back alignment and function description |
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| >sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1 | Back alignment and function description |
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| >sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum GN=DDB_G0274399 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1789 | ||||||
| 297735762 | 2154 | unnamed protein product [Vitis vinifera] | 0.874 | 0.726 | 0.557 | 0.0 | |
| 297850080 | 2129 | hypothetical protein ARALYDRAFT_312653 [ | 0.673 | 0.565 | 0.492 | 0.0 | |
| 9954728 | 2142 | Similar to tRNA-splicing endonuclease po | 0.674 | 0.563 | 0.490 | 0.0 | |
| 334182633 | 2127 | hydrolase domain-containing protein [Ara | 0.645 | 0.543 | 0.515 | 0.0 | |
| 255544500 | 2110 | splicing endonuclease positive effector | 0.516 | 0.437 | 0.604 | 0.0 | |
| 222641848 | 2215 | hypothetical protein OsJ_29879 [Oryza sa | 0.731 | 0.590 | 0.435 | 0.0 | |
| 125564230 | 2181 | hypothetical protein OsI_31894 [Oryza sa | 0.702 | 0.575 | 0.423 | 0.0 | |
| 357154159 | 2045 | PREDICTED: uncharacterized protein LOC10 | 0.617 | 0.539 | 0.430 | 0.0 | |
| 302811594 | 2281 | hypothetical protein SELMODRAFT_426269 [ | 0.422 | 0.330 | 0.331 | 1e-129 | |
| 302796659 | 2265 | hypothetical protein SELMODRAFT_444379 [ | 0.422 | 0.333 | 0.330 | 1e-129 |
| >gi|297735762|emb|CBI18449.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1845 bits (4780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1007/1807 (55%), Positives = 1225/1807 (67%), Gaps = 242/1807 (13%)
Query: 1 MTDKNPSRRELLDRWRGIEEEEELDDGNDPL-----KRRRIDGLKEKWFADAFNFLIGLP 55
M K +RRELL RWRGIEE + DG D + KRRR+ LKE WF+DAFNFLI LP
Sbjct: 57 MAKKVATRRELLVRWRGIEEV--IGDGGDDVLPDTPKRRRLQRLKEDWFSDAFNFLIDLP 114
Query: 56 EKNHIWCGSWDIMGPYLELFYNYFKDECHDSPLRLLWKRISGEMQHCIQCVSQHHQAQEM 115
++HIWCGSW++MGP LE FYNY DE +DSPL+LLWKR+S EM+ C C+SQHHQAQ+M
Sbjct: 115 SEDHIWCGSWELMGPLLETFYNYSTDESNDSPLKLLWKRMSVEMRKCTLCISQHHQAQDM 174
Query: 116 YSMEYESGVIGPLLDVLRSLDEERVTKYLREINARLAHQEYYPQIDNNQVICIMYEVLMF 175
YSMEY+S I PLL VLRSLDEERV ++L+EINARLA EY P+ DN +V+ +M+EVL F
Sbjct: 175 YSMEYDSSSISPLLSVLRSLDEERVGQHLKEINARLAGGEYIPERDNAEVVSVMFEVLTF 234
Query: 176 PVLLDDQSLFTEFETFIEAVDNMHELALDGHQLFPGVFALFFFNRRVRTIGRRLARSMGK 235
P L DDQSL TEF+ FIE +D+ HEL L+GHQ +PGV+ALFFF RRVRTIG RLA +GK
Sbjct: 235 PCLFDDQSLVTEFQIFIETIDDKHELTLEGHQQYPGVYALFFFKRRVRTIGHRLAGYLGK 294
Query: 236 LRRATDLEPMQPLLKKFIGFLETEVLTSTFKTSRPRARLKRLPIWLGITSLLEFLEPPAL 295
LR AT+LEP+QP LKK IG LET+VL STF+TSRPR +L+R+ +WLGI +LL FLEPPAL
Sbjct: 295 LREATELEPLQPFLKKCIGLLETDVLPSTFETSRPRVQLERISVWLGIKALLGFLEPPAL 354
Query: 296 EEGILERYPIFFDIVLNHISGDSPEFSHAVSCLRELFKMLGYKLWLRSTLSPSVMRNTLL 355
EEGILERYPIFF IVLNHIS DS EFSHAV CLR LF+MLGYKLWLRSTLSP+VMRNTLL
Sbjct: 355 EEGILERYPIFFSIVLNHISDDSLEFSHAVVCLRLLFEMLGYKLWLRSTLSPTVMRNTLL 414
Query: 356 GQCFHTRSEKIHKDIFDLFPPFLQSLEALQDGEHEKQRRHFLYFLLYQVPVSSNFSVLTA 415
QCFHT++EK HK+IFDLF PFLQSLEALQDGEHE+QRRHF+YFLL+QV VS NFS L
Sbjct: 415 SQCFHTQNEKSHKEIFDLFQPFLQSLEALQDGEHEQQRRHFIYFLLHQVNVSRNFSSLMR 474
Query: 416 QMACKISLLIIHRGYKMNPPCPPFECAHMWGPFLVSSLKDSSLHSSLRQPAFDLIQTIIV 475
+ AC+I+LLII RGYKMNPP PPFECAHMWGP LVSSLKDSSL +SLR+PAFDLI+T+IV
Sbjct: 475 KKACQIALLIILRGYKMNPPSPPFECAHMWGPSLVSSLKDSSLENSLRRPAFDLIETLIV 534
Query: 476 SDAAALVTSVLKSARPLRTETIISVEMNEDEDDLKFPFDPDVDEKDDNSSWNEFTAQSRI 535
SDAAALVTS+L + + + +E++++EDD + PF DV+EK +SSW+E++ QS+I
Sbjct: 535 SDAAALVTSMLNCCKHPSIDQSMIIELDDEEDDDELPFVLDVEEK-HSSSWSEYSEQSKI 593
Query: 536 TSQEFRVWMCIPMLWIDVLVDINPSVLPVSFSKVVFWARSHFSIVEPEISAEMALDVRAW 595
TSQ+ R W CIPMLW++VLV+INPSVLP+S SK VFWARS F++VEPE +AEM + V+ W
Sbjct: 594 TSQDCRRWRCIPMLWLEVLVEINPSVLPISVSKAVFWARSRFALVEPEKNAEMEVPVKNW 653
Query: 596 LSSSATEISSTFGWKAPTGCDDGGAGKVSKNSMEVSTMCLPLIRAFKRLTAHFIVQIGQG 655
LS SA EISS+FGWK PTG DDGG GK S+NSM+VSTMC+PLIR FKRLTAH+IVQ+ Q
Sbjct: 654 LSFSAKEISSSFGWKVPTGSDDGGDGKESQNSMKVSTMCIPLIRTFKRLTAHYIVQMEQE 713
Query: 656 ELRKQWTWEPRMGESLILSLVDPNDNVRQFGKCILEQVSNTRGLASGLKFLSSSTSSLSA 715
ELRKQW WEPRMGESLIL L++PNDNVRQ GKC+LEQVSN RGLA L+FL S T S+SA
Sbjct: 714 ELRKQWIWEPRMGESLILLLLEPNDNVRQVGKCLLEQVSNMRGLAHCLQFLCSCTLSMSA 773
Query: 716 IFLGLKHALKLVQLDSVLLKFQSLHHFFFVLRKIFEEGHLPKCDLLKSSSGHSSITMFSS 775
+ GL+HAL+LVQ+DSVLL F++LHHFFFVL K+ +EG + D + SSG +I+ FSS
Sbjct: 774 TYNGLRHALRLVQVDSVLLNFETLHHFFFVLCKLLKEGVICTSDPQRHSSGIKNISKFSS 833
Query: 776 QGGFLRQPQFESFDAN-TGCSSNIDLKLWEKFHYTLSEITWPSVKRCLQEGKTFLDYSLC 834
QGGFLRQP F+SF N G SS D K EKF LSEITWP +++CL EGK F+DY +
Sbjct: 834 QGGFLRQPAFDSFPENVNGHSSVDDSKSREKFSCLLSEITWPFIRKCLVEGKAFVDYKIS 893
Query: 835 QMTCIRVLEILPVVFGKVCPLLAEHSGYSATTTQNVFDF------------KWLHDLMDW 882
Q+T + E H+ S T +V F +++ + W
Sbjct: 894 QLTLGYLFE--------------NHALLSKRTKASVRIFSLKDISYRLVLPRFIFYQIRW 939
Query: 883 GKSQLKVVIVYWKRTITCLLNLLKDSCSGTSLLTVSSIENLISSDHLDVDGLVEKVSLLC 942
G + YW++T+ LL+LLK SCS S + +IENLIS D L +D L E+V+ L
Sbjct: 940 GLRLSFCWVGYWRQTMISLLHLLKGSCSDKSASFIRAIENLISCDSLMMDELTEQVAHLS 999
Query: 943 VSLSKESSRNSGKT-LMSMAHFPEDLSVERKSAALDIRPFPVKDVDVEILDSETIASKSK 1001
VSLS E+S GKT L S A F ED S ER+ +A D++PF D+DV+ILDS T+++K
Sbjct: 1000 VSLSNEASCIVGKTDLKSKAFFSEDSSFERQHSASDLQPFASDDMDVQILDSVTVSNKMD 1059
Query: 1002 DN-LIVVSDDEIEKEPSVDQGLLSDFKSRQCVVVSKTGAPISDKRASQTESLKNRVSILD 1060
+N +I++SDDE EK+ S ++ L F+ R
Sbjct: 1060 NNSVIILSDDETEKQISSNKQFLEAFQQR------------------------------- 1088
Query: 1061 SSKDLLDGSGPASPKQVLDESVGKSLNSL--DSKVVDGKKKESNSKFNASDSLSFQNRVG 1118
D D SG AS KQ LD + + +++ K VD ++KE NSKF DS Q +
Sbjct: 1089 ---DDSDTSGLASQKQELDTTKDRQISASHPKPKSVDSRRKEINSKFKVKDSFPSQFKGN 1145
Query: 1119 LRNKPVESSSFKNVNQASSNVVAKPTNKLLKELVCDVENDPLESSFKSGKHQQTYLTKSG 1178
L + ++++ K ++QA + V K +KE V D+ +DP E + KS K Q+ LTK
Sbjct: 1146 LVSTSDKTANLKIMDQALNRVALKTGETAIKESVRDIADDPWELAVKSLKPHQSCLTKPS 1205
Query: 1179 PFVPKRQVIQLKSPFENRCG-LHRMETGVKRFGPPKLDDWYKPILEIDYFATVGLASSRE 1237
+PKRQVIQL+ P ENR G L +++ GVKRF PPKLDDWY+PILEIDYF TVGLAS+ +
Sbjct: 1206 ASIPKRQVIQLQLPGENRSGYLRKLDAGVKRFKPPKLDDWYRPILEIDYFVTVGLASASK 1265
Query: 1238 DENRVHCKLKEVPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWEDMYYGSLSVLS 1297
DE++ KLKEVP+CF+SP+Q+V IFRPLVLEEFKAQLHSSFLEMSS E M GS SVLS
Sbjct: 1266 DESQTVNKLKEVPMCFESPDQYVDIFRPLVLEEFKAQLHSSFLEMSSSEGMCCGSASVLS 1325
Query: 1298 VERVDDFHLVRFVHDDNDSVTSKIFSENDLVLLTRVSPQKTPHDVHMVGKVERRERDNNR 1357
VER+DDFHLVR VHD +DS + FSENDLVLLTR Q + H+VHMVGKVERRE+D+
Sbjct: 1326 VERIDDFHLVRCVHDGSDSAAYRTFSENDLVLLTRQPLQNSSHEVHMVGKVERREKDSKS 1385
Query: 1358 RSSILLIRFYLQNGSVRLNQARRNLLERSKWHATLIMSITPQLREFHALSSLKSIPLLPI 1417
RS++L+IRFYLQNGS RLN+AR+ L+ERSKW+ +
Sbjct: 1386 RSNVLVIRFYLQNGSSRLNRARKLLIERSKWYLS-------------------------- 1419
Query: 1418 ILNPVNVSRGYNESRELDLGKLSQLQQILKTSFNESQLQAISVAIGLSSSWKKDCELSLI 1477
++IL++S+N SQLQAISVAI S KK+ +LSLI
Sbjct: 1420 -------------------------RRILESSYNSSQLQAISVAIA-SPDSKKNFDLSLI 1453
Query: 1478 QGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQDAALA 1537
QGPPGTGKTRTIVAIVS LLA S LK +N + +
Sbjct: 1454 QGPPGTGKTRTIVAIVSGLLA------SPLKG-----VNMKNSV---------------- 1486
Query: 1538 RQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVG 1597
D ++ K +SVR RVLICAQSNAAVDELVSRIS EGLY SDG YKPYLVRVG
Sbjct: 1487 -----DGKQSLKPMGTSVRQRVLICAQSNAAVDELVSRISSEGLYSSDGNMYKPYLVRVG 1541
Query: 1598 NVKTVHPNSLPFFIDTLVDHRLAEERMHLTDPKNEFCTRSSTLRSNLEKLVDRIRFFEAK 1657
NVKTVH NSLPFFIDTLVD RL LV+RIR +EAK
Sbjct: 1542 NVKTVHQNSLPFFIDTLVDQRL---------------------------LVERIRLYEAK 1574
Query: 1658 RANTKDGNSDPKNMLDDEVHKGDDVKLSDVELEAKLRKLYEQKKQIYRELGVAQVQEKKS 1717
RAN + E+E KLR+LYEQKK+I
Sbjct: 1575 RANLR-------------------------EIEVKLRRLYEQKKEI-------------- 1595
Query: 1718 YEETKALKHKLRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVI 1777
+EIVV TLSGCGGDLYGVCSES+S KFG SEN LFDAVVI
Sbjct: 1596 ------------------SEIVVATLSGCGGDLYGVCSESISTHKFGRSSENHLFDAVVI 1637
Query: 1778 DEAAQVV 1784
DEAAQ +
Sbjct: 1638 DEAAQAL 1644
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297850080|ref|XP_002892921.1| hypothetical protein ARALYDRAFT_312653 [Arabidopsis lyrata subsp. lyrata] gi|297338763|gb|EFH69180.1| hypothetical protein ARALYDRAFT_312653 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|9954728|gb|AAG09081.1|AC026237_2 Similar to tRNA-splicing endonuclease positive effector SEN1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|334182633|ref|NP_173124.2| hydrolase domain-containing protein [Arabidopsis thaliana] gi|332191377|gb|AEE29498.1| hydrolase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|255544500|ref|XP_002513311.1| splicing endonuclease positive effector sen1, putative [Ricinus communis] gi|223547219|gb|EEF48714.1| splicing endonuclease positive effector sen1, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|222641848|gb|EEE69980.1| hypothetical protein OsJ_29879 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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| >gi|125564230|gb|EAZ09610.1| hypothetical protein OsI_31894 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
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| >gi|357154159|ref|XP_003576691.1| PREDICTED: uncharacterized protein LOC100835663 [Brachypodium distachyon] | Back alignment and taxonomy information |
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| >gi|302811594|ref|XP_002987486.1| hypothetical protein SELMODRAFT_426269 [Selaginella moellendorffii] gi|300144892|gb|EFJ11573.1| hypothetical protein SELMODRAFT_426269 [Selaginella moellendorffii] | Back alignment and taxonomy information |
|---|
| >gi|302796659|ref|XP_002980091.1| hypothetical protein SELMODRAFT_444379 [Selaginella moellendorffii] gi|300152318|gb|EFJ18961.1| hypothetical protein SELMODRAFT_444379 [Selaginella moellendorffii] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1789 | ||||||
| DICTYBASE|DDB_G0285243 | 2069 | DDB_G0285243 "putative splicin | 0.149 | 0.129 | 0.25 | 6e-23 | |
| TAIR|locus:2126480 | 1311 | AT4G30100 [Arabidopsis thalian | 0.271 | 0.370 | 0.260 | 3e-21 | |
| TAIR|locus:2059088 | 1090 | AT2G19120 "AT2G19120" [Arabido | 0.276 | 0.454 | 0.25 | 1.5e-19 | |
| DICTYBASE|DDB_G0274399 | 967 | DDB_G0274399 "DNA2/NAM7 helica | 0.023 | 0.043 | 0.571 | 1.1e-18 | |
| TAIR|locus:2130384 | 818 | MAA3 "MAGATAMA 3" [Arabidopsis | 0.038 | 0.084 | 0.394 | 6.2e-14 | |
| MGI|MGI:2443480 | 2646 | Setx "senataxin" [Mus musculus | 0.044 | 0.030 | 0.356 | 8.6e-14 | |
| POMBASE|SPBC29A10.10c | 1944 | SPBC29A10.10c "tRNA-splicing e | 0.081 | 0.075 | 0.286 | 1e-13 | |
| UNIPROTKB|E1BAS6 | 2662 | SETX "Uncharacterized protein" | 0.054 | 0.036 | 0.330 | 2.5e-13 | |
| UNIPROTKB|D4AEB3 | 2647 | Setx "Protein Setx" [Rattus no | 0.044 | 0.030 | 0.356 | 4.5e-13 | |
| UNIPROTKB|Q7Z333 | 2677 | SETX "Probable helicase senata | 0.044 | 0.029 | 0.367 | 4.9e-13 |
| DICTYBASE|DDB_G0285243 DDB_G0285243 "putative splicing endonuclease" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 156 (60.0 bits), Expect = 6.0e-23, Sum P(4) = 6.0e-23
Identities = 75/300 (25%), Positives = 130/300 (43%)
Query: 1245 KLKEVPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWEDMYYGSL----SVLSVE- 1299
+LK VP F + ++ IF+PL++EEF+AQ+ + E +++D+ + + V+
Sbjct: 1156 ELKPVPGTFDDLKHYIDIFQPLLIEEFRAQVIRNLDEGVNFQDVTVDNFIQENGFIDVDF 1215
Query: 1300 ---------RVDDFHLVRFVHDDNDSVTSKIFSENDLV-LLTRVSPQKTPHDVHMVGKVX 1349
+DDF LV N S ++ + + +L +V ++ + GK
Sbjct: 1216 ELPPKENDILLDDFVLV-IQPPRNGSPLNEAYRDPNLFSAFGKV--ERKDRIIPKGGKGN 1272
Query: 1350 XXXXXXXXXXX---ILLIRFYLQNGSVRLNQARRNLLERSKWHATLIMSITPQLREFHAX 1406
I+ +RFY + S + Q + + W+ + S++ RE+ A
Sbjct: 1273 FDQNGGGGGGGRGFIIKVRFYKASSSTFVQQICKI---GNIWNIQKVTSLSTISREYMAL 1329
Query: 1407 XXXXXXXXXXXXXXXVNVSRGYNESRELDLGKLSQLQQILKTSFNESQLQAISVAIGLSS 1466
++ N+S +L Q L++S NESQL AI+ S
Sbjct: 1330 HMVGKIPLGTSIISP-HLYINSNDSSSSTFKIPDKLFQKLRSSLNESQLSAIA------S 1382
Query: 1467 SWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTS-PKSHLKQNYSSCINSRPKIGQSA 1525
+ K SL+QGPPGTGKT+TI++++S T+ KSH C S + + A
Sbjct: 1383 TLKNLGGFSLLQGPPGTGKTKTILSLLSVFTTVLTNIEKSHSDPKILVCAPSNAAVDEIA 1442
|
|
| TAIR|locus:2126480 AT4G30100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2059088 AT2G19120 "AT2G19120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0274399 DDB_G0274399 "DNA2/NAM7 helicase family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| TAIR|locus:2130384 MAA3 "MAGATAMA 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| MGI|MGI:2443480 Setx "senataxin" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| POMBASE|SPBC29A10.10c SPBC29A10.10c "tRNA-splicing endonuclease positive effector (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BAS6 SETX "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|D4AEB3 Setx "Protein Setx" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q7Z333 SETX "Probable helicase senataxin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00029604001 | SubName- Full=Chromosome chr9 scaffold_49, whole genome shotgun sequence; (1673 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1789 | |||
| pfam13086 | 220 | pfam13086, AAA_11, AAA domain | 4e-26 | |
| pfam12726 | 724 | pfam12726, SEN1_N, SEN1 N terminal | 1e-08 | |
| pfam13245 | 73 | pfam13245, AAA_19, Part of AAA domain | 1e-06 | |
| TIGR00376 | 637 | TIGR00376, TIGR00376, DNA helicase, putative | 1e-05 | |
| TIGR01447 | 586 | TIGR01447, recD, exodeoxyribonuclease V, alpha sub | 1e-05 | |
| COG1112 | 767 | COG1112, COG1112, Superfamily I DNA and RNA helica | 2e-04 |
| >gnl|CDD|221912 pfam13086, AAA_11, AAA domain | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 4e-26
Identities = 75/336 (22%), Positives = 127/336 (37%), Gaps = 149/336 (44%)
Query: 1450 FNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQ 1509
N+SQ +AI A LSSS +++LIQGPPGTGKT TI
Sbjct: 2 LNDSQREAIKKA--LSSS-----DITLIQGPPGTGKTTTI-------------------- 34
Query: 1510 NYSSCINSRPKIGQSAAIARAWQDAALARQINEDSERDKKSSESSVRARVLICAQSNAAV 1569
+ +Q+ ++ K +VL+CA SN+AV
Sbjct: 35 ------------------------VEIIKQLLSNA-PGK---------KVLVCAPSNSAV 60
Query: 1570 DELVSRISKEGLYGSDGKTYKPYLVRVGNV-KTVHPNSLPFFIDTLVDHRLAEERMHLTD 1628
D ++ R+ ++ + +VR+G+ + +H + L + ++ L++ + +
Sbjct: 61 DNILERLLEQK--------FGLKIVRIGSPAREIHEDVLQYSLEYLLEAKFEQLL----- 107
Query: 1629 PKNEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGNSDPKNMLDDEVHKGDDVKLSDVE 1688
K + +++ +++
Sbjct: 108 -----------------KRIRKLKSLLEEKSK---------------------------- 122
Query: 1689 LEAKLRKLYEQKKQIYRELGVAQVQEKKSYEETKALKHKLRKSILKEAEIVVTTLSGCGG 1748
L+ + RKL + K++ +EL + L+ +RK IL EA++V TTLSG G
Sbjct: 123 LKRERRKLRSEIKKLKKEL--------------ERLRKSIRKEILDEADVVCTTLSGAG- 167
Query: 1749 DLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQVV 1784
S + G K FD V+IDEAAQ
Sbjct: 168 ------SSLLEGLKK--------FDVVIIDEAAQAT 189
|
This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. Length = 220 |
| >gnl|CDD|221737 pfam12726, SEN1_N, SEN1 N terminal | Back alignment and domain information |
|---|
| >gnl|CDD|222005 pfam13245, AAA_19, Part of AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|232945 TIGR00376, TIGR00376, DNA helicase, putative | Back alignment and domain information |
|---|
| >gnl|CDD|233417 TIGR01447, recD, exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
| >gnl|CDD|224037 COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1789 | |||
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 100.0 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 100.0 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 99.98 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 99.96 | |
| PF12726 | 727 | SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y | 99.93 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 99.84 | |
| KOG1807 | 1025 | consensus Helicases [Replication, recombination an | 99.72 | |
| KOG1801 | 827 | consensus tRNA-splicing endonuclease positive effe | 99.23 | |
| COG1112 | 767 | Superfamily I DNA and RNA helicases and helicase s | 99.11 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 99.1 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 98.86 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 98.39 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 98.34 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 98.31 | |
| KOG1806 | 1320 | consensus DEAD box containing helicases [Replicati | 98.23 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 98.15 | |
| KOG1804 | 775 | consensus RNA helicase [RNA processing and modific | 98.08 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 98.03 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 97.87 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 97.86 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 97.83 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 97.83 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 97.8 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 97.79 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 97.76 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 97.7 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 97.67 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 97.65 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 97.61 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 97.55 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 97.51 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 97.5 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 97.33 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 97.24 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 96.79 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 96.5 | |
| COG0210 | 655 | UvrD Superfamily I DNA and RNA helicases [DNA repl | 96.39 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 96.38 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 96.25 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 96.06 | |
| PRK06851 | 367 | hypothetical protein; Provisional | 95.91 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 95.85 | |
| PTZ00424 | 401 | helicase 45; Provisional | 95.72 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 95.65 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 95.63 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 95.6 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 95.5 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 95.47 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 95.37 | |
| TIGR00609 | 1087 | recB exodeoxyribonuclease V, beta subunit. All pro | 95.33 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 95.26 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 95.25 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 95.1 | |
| PRK12377 | 248 | putative replication protein; Provisional | 95.09 | |
| KOG0744 | 423 | consensus AAA+-type ATPase [Posttranslational modi | 95.02 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 94.91 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 94.81 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 94.79 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 94.72 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 94.6 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 94.6 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 94.57 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 94.46 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 94.38 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 94.34 | |
| PRK08181 | 269 | transposase; Validated | 94.33 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 94.28 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 94.27 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 94.22 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 94.22 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 94.05 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 94.04 | |
| PRK06526 | 254 | transposase; Provisional | 93.89 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 93.88 | |
| PRK10876 | 1181 | recB exonuclease V subunit beta; Provisional | 93.88 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 93.87 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 93.85 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 93.85 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 93.82 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 93.77 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 93.68 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 93.6 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 93.58 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 93.57 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 93.51 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 93.38 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 93.38 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 93.35 | |
| PF05729 | 166 | NACHT: NACHT domain | 93.34 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 93.31 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 93.31 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 93.3 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 93.19 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 93.11 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 93.09 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 92.99 | |
| KOG0743 | 457 | consensus AAA+-type ATPase [Posttranslational modi | 92.96 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 92.96 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 92.91 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 92.9 | |
| PRK08116 | 268 | hypothetical protein; Validated | 92.89 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 92.8 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 92.76 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 92.75 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 92.69 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 92.66 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 92.56 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 92.55 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 92.49 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 92.42 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 92.39 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 92.35 | |
| TIGR02784 | 1141 | addA_alphas double-strand break repair helicase Ad | 92.34 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 92.31 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 92.29 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 92.27 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 92.23 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 92.14 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 92.13 | |
| PTZ00110 | 545 | helicase; Provisional | 92.11 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 92.09 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 92.07 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 92.07 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 92.06 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 92.05 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 92.01 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 91.97 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 91.97 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 91.97 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 91.88 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 91.82 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 91.7 | |
| PF00910 | 107 | RNA_helicase: RNA helicase; InterPro: IPR000605 He | 91.66 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 91.56 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 91.44 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 91.44 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 91.43 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 91.41 | |
| PF13481 | 193 | AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. | 91.33 | |
| PF01443 | 234 | Viral_helicase1: Viral (Superfamily 1) RNA helicas | 91.3 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 91.27 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 91.22 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 91.15 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 91.14 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 91.09 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 91.07 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 91.07 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 91.03 | |
| COG3973 | 747 | Superfamily I DNA and RNA helicases [General funct | 90.98 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 90.93 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 90.92 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 90.9 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 90.82 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 90.7 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 90.69 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 90.65 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 90.62 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 90.58 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 90.57 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 90.56 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 90.53 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 90.49 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 90.49 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 90.48 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 90.45 | |
| PF13476 | 202 | AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V | 90.44 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 90.41 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 90.19 | |
| KOG0651 | 388 | consensus 26S proteasome regulatory complex, ATPas | 90.18 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 90.12 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 90.11 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 90.05 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 89.97 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 89.92 | |
| PF01078 | 206 | Mg_chelatase: Magnesium chelatase, subunit ChlI; I | 89.81 | |
| PHA02624 | 647 | large T antigen; Provisional | 89.78 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 89.77 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 89.77 | |
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 89.71 | |
| ) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309 | 127 | Torsin: Torsin; InterPro: IPR010448 This family co | 89.63 | |
| PRK09361 | 225 | radB DNA repair and recombination protein RadB; Pr | 89.6 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 89.55 | |
| PRK08727 | 233 | hypothetical protein; Validated | 89.54 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 89.5 | |
| PRK06620 | 214 | hypothetical protein; Validated | 89.5 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 89.37 | |
| PF07726 | 131 | AAA_3: ATPase family associated with various cellu | 89.36 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 89.34 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 89.32 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 89.32 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 89.26 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 89.25 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 89.25 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 89.23 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 89.18 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 89.16 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 89.13 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 89.12 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 89.08 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 89.05 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 89.02 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 88.99 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 88.99 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 88.92 | |
| cd01394 | 218 | radB RadB. The archaeal protein radB shares simila | 88.79 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 88.75 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 88.71 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 88.6 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 88.38 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 88.37 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 88.31 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 88.3 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 88.25 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 88.24 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 88.21 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 88.17 | |
| PHA02244 | 383 | ATPase-like protein | 88.13 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 88.07 | |
| TIGR01359 | 183 | UMP_CMP_kin_fam UMP-CMP kinase family. This subfam | 87.98 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 87.92 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 87.85 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 87.82 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 87.81 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 87.73 | |
| COG0467 | 260 | RAD55 RecA-superfamily ATPases implicated in signa | 87.69 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 87.6 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 87.56 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 87.52 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 87.5 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 87.33 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 87.1 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 86.89 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 86.87 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 86.74 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 86.71 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 86.65 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 86.62 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 86.53 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 86.52 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 86.44 | |
| PF13173 | 128 | AAA_14: AAA domain | 86.36 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 86.33 | |
| TIGR01618 | 220 | phage_P_loop phage nucleotide-binding protein. Thi | 86.29 | |
| PRK13909 | 910 | putative recombination protein RecB; Provisional | 86.24 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 86.17 | |
| PF12774 | 231 | AAA_6: Hydrolytic ATP binding site of dynein motor | 86.14 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 86.1 | |
| PRK04328 | 249 | hypothetical protein; Provisional | 85.99 | |
| PRK00131 | 175 | aroK shikimate kinase; Reviewed | 85.97 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 85.94 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 85.93 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 85.87 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 85.81 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 85.59 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 85.49 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 85.44 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 85.29 | |
| PRK05541 | 176 | adenylylsulfate kinase; Provisional | 85.26 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 85.26 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 85.21 | |
| PHA02774 | 613 | E1; Provisional | 85.2 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 85.15 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 85.12 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 85.09 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 84.89 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 84.8 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 84.67 | |
| TIGR01313 | 163 | therm_gnt_kin carbohydrate kinase, thermoresistant | 84.63 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 84.57 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 84.57 | |
| PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 84.57 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 84.56 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 84.54 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 84.33 | |
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 84.33 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 84.32 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 84.26 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 84.23 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 84.2 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 84.17 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 84.17 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 84.17 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 84.06 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 83.89 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 83.88 | |
| PRK09302 | 509 | circadian clock protein KaiC; Reviewed | 83.86 | |
| PRK14527 | 191 | adenylate kinase; Provisional | 83.85 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 83.81 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 83.58 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 83.52 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 83.49 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 83.4 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 83.4 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 83.38 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 83.33 | |
| KOG0738 | 491 | consensus AAA+-type ATPase [Posttranslational modi | 83.3 | |
| TIGR02030 | 337 | BchI-ChlI magnesium chelatase ATPase subunit I. Th | 83.23 | |
| cd02021 | 150 | GntK Gluconate kinase (GntK) catalyzes the phospho | 83.12 | |
| PRK06762 | 166 | hypothetical protein; Provisional | 82.94 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 82.94 | |
| PF06414 | 199 | Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e | 82.87 | |
| PRK04040 | 188 | adenylate kinase; Provisional | 82.86 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 82.79 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 82.79 | |
| PF14532 | 138 | Sigma54_activ_2: Sigma-54 interaction domain; PDB: | 82.75 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 82.51 | |
| PF06068 | 398 | TIP49: TIP49 C-terminus; InterPro: IPR010339 This | 82.49 | |
| PRK04301 | 317 | radA DNA repair and recombination protein RadA; Va | 82.44 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 82.37 | |
| cd01428 | 194 | ADK Adenylate kinase (ADK) catalyzes the reversibl | 82.27 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 82.2 | |
| TIGR02236 | 310 | recomb_radA DNA repair and recombination protein R | 82.15 | |
| PF01580 | 205 | FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00 | 82.14 | |
| PRK13764 | 602 | ATPase; Provisional | 82.12 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 82.08 | |
| KOG0731 | 774 | consensus AAA+-type ATPase containing the peptidas | 82.03 | |
| PRK00889 | 175 | adenylylsulfate kinase; Provisional | 81.98 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 81.98 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 81.77 | |
| PF13479 | 213 | AAA_24: AAA domain | 81.68 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 81.63 | |
| PRK14531 | 183 | adenylate kinase; Provisional | 81.57 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 81.56 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 81.41 | |
| cd02027 | 149 | APSK Adenosine 5'-phosphosulfate kinase (APSK) cat | 81.34 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 81.34 | |
| PLN02200 | 234 | adenylate kinase family protein | 81.29 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 81.26 | |
| COG1936 | 180 | Predicted nucleotide kinase (related to CMP and AM | 81.08 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 81.06 | |
| CHL00081 | 350 | chlI Mg-protoporyphyrin IX chelatase | 81.05 | |
| PRK13768 | 253 | GTPase; Provisional | 81.03 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 80.92 | |
| TIGR02012 | 321 | tigrfam_recA protein RecA. This model describes or | 80.86 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 80.83 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 80.83 | |
| TIGR00176 | 155 | mobB molybdopterin-guanine dinucleotide biosynthes | 80.74 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 80.7 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 80.68 | |
| PF07088 | 484 | GvpD: GvpD gas vesicle protein; InterPro: IPR00978 | 80.59 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 80.51 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 80.47 | |
| TIGR00764 | 608 | lon_rel lon-related putative ATP-dependent proteas | 80.43 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 80.41 | |
| PRK13947 | 171 | shikimate kinase; Provisional | 80.39 | |
| PF12846 | 304 | AAA_10: AAA-like domain | 80.39 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 80.35 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 80.32 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 80.29 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 80.18 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 80.11 | |
| PRK03839 | 180 | putative kinase; Provisional | 80.07 | |
| PRK06696 | 223 | uridine kinase; Validated | 80.01 |
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=334.01 Aligned_cols=358 Identities=27% Similarity=0.361 Sum_probs=225.5
Q ss_pred hHHHHhhhHHHHHHHHHHHHhhhhccc--cccccccceEEEEe------eeeeCCeEEEEEeecCCCCccccCCCCCcEE
Q 000248 1257 EQFVSIFRPLVLEEFKAQLHSSFLEMS--SWEDMYYGSLSVLS------VERVDDFHLVRFVHDDNDSVTSKIFSENDLV 1328 (1789)
Q Consensus 1257 eEY~~tFePLLLEE~~AQLqsSleEis--saEd~~~g~IsVlS------~ervDdF~~V~f~~~~~d~le~~~fseGDLV 1328 (1789)
+++...|.+||-.|..+.+.-.-.... +.+........+.+ .....+.+++.|..+. +..+...|++||+|
T Consensus 3 ~~f~sk~~~ll~~er~~ei~~t~~~~~~~~ie~l~~~g~~i~nl~~v~~~tGl~g~~li~f~~~~-~~lp~~~~~~gd~v 81 (649)
T KOG1803|consen 3 EEFVSKMSELLDHERKAEISVTEKSLDNVPIEALQRKGLAILNLWLVSVRTGLGGKSLIVFSKNR-EVLPSNSFGPGDVV 81 (649)
T ss_pred hHHHHHHHHHHHhhhhcchhhhhHhhhcCCHHHHHhccceeeeEEEEEEeecccceEEEEeccCc-cccCcCCCCCCcEE
Confidence 678889999999999888863211111 11111111122221 2223456788887765 45667899999999
Q ss_pred EEEecCCCCCCCceEEEEEEEEeeccCCCCceEEEEEEEecCCcchhHHHhhhhhcccchhhhhcccccHHHHHHHhhcc
Q 000248 1329 LLTRVSPQKTPHDVHMVGKVERRERDNNRRSSILLIRFYLQNGSVRLNQARRNLLERSKWHATLIMSITPQLREFHALSS 1408 (1789)
Q Consensus 1329 LLSk~kPe~s~~~v~aLGkVer~e~d~~r~~~iL~LRf~l~n~ssrLnq~~~~L~~~S~w~l~KL~SLTTilREy~AL~s 1408 (1789)
.|... +........+-|.|.+...+ .+.+.|. + ........+...+.++.|-.|+.|+..++..
T Consensus 82 ~lr~~-~~~~~~~~~~~GvV~~~~~~------~i~~a~e--e-------~~d~~~~~~~l~l~kl~n~vty~R~~~~~i~ 145 (649)
T KOG1803|consen 82 WLRTD-KLNNKSKPCTEGVVYRVAED------SIDVAFE--E-------EVDKPLTLSSLRLLKLENKVTYRRMKDTMIC 145 (649)
T ss_pred EEEcc-cccccCcccccceeEeeccc------hhhHhHH--h-------hhcccchhhHHHHHHhhhhhhheecHHHHhh
Confidence 99843 33333334567888876542 1222221 0 0000001124566788899999999998876
Q ss_pred CCC--CC-----ccccccCCCCCCCCCCCCccccccchhhHHHHhhcCCCHHHHHHHHHHHccCCCCccCCceeEEeCCC
Q 000248 1409 LKS--IP-----LLPIILNPVNVSRGYNESRELDLGKLSQLQQILKTSFNESQLQAISVAIGLSSSWKKDCELSLIQGPP 1481 (1789)
Q Consensus 1409 L~~--~P-----L~~~ILsP~~~s~~~~~s~~v~l~kip~L~~~Lk~~LNeSQlqAI~sALs~~~~~~~~~gfSLIQGPP 1481 (1789)
+.. .| +...++......+..+ .... -..++..++|.||.+||..++... .+.+|||||
T Consensus 146 l~~~~~~~~~~~vv~~l~~~~~~~~~~~----~~~~----~~~~~~~~ln~SQk~Av~~~~~~k-------~l~~I~GPP 210 (649)
T KOG1803|consen 146 LSKFSNPGPSSDVVETLFGDRKPIPSPN----IEIK----KITFFNKNLNSSQKAAVSFAINNK-------DLLIIHGPP 210 (649)
T ss_pred HhhhcCccchhhhHHHHhccccCCCCch----hhhc----ccccCCccccHHHHHHHHHHhccC-------CceEeeCCC
Confidence 643 11 2223333221111100 0000 123455789999999999997542 699999999
Q ss_pred CCCchhHHHHHHHHHHhccCCCCcccccCcccccCCCCccchhHHHHHHHHHHHHHhhhcccccccccccccccCCeEEE
Q 000248 1482 GTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQDAALARQINEDSERDKKSSESSVRARVLI 1561 (1789)
Q Consensus 1482 GTGKTkTIvgLVsaLLs~~~~~~s~~~~~~~s~~~~rp~~s~s~avar~W~daalarql~~d~~~~~~ss~~~~k~RILV 1561 (1789)
|||||+|++.||..++.. ++||||
T Consensus 211 GTGKT~TlvEiI~qlvk~--------------------------------------------------------~k~VLV 234 (649)
T KOG1803|consen 211 GTGKTRTLVEIISQLVKQ--------------------------------------------------------KKRVLV 234 (649)
T ss_pred CCCceeeHHHHHHHHHHc--------------------------------------------------------CCeEEE
Confidence 999999999999988763 579999
Q ss_pred EeCchHHHHHHHHHHHhcCCcCCCCCcCCCcEEEEcccccccCCCccccHHHHHHHHHHHhhhccCCCcccccccchHHH
Q 000248 1562 CAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLVDHRLAEERMHLTDPKNEFCTRSSTLR 1641 (1789)
Q Consensus 1562 CAPSNAAVDEIV~RLlk~GI~d~dG~~ykP~VVRIG~~eaVhs~V~~vsLD~LVeqRLs~e~~~~~d~k~~~~~ess~Lr 1641 (1789)
|||||.|||+|++||.-.|+ ++||+|.+.+..+.+.+.+||.++...-+. ......+
T Consensus 235 caPSn~AVdNiverl~~~~~----------~l~R~g~paRl~~~~~~~sld~~~~t~d~~-------------~~~~~~s 291 (649)
T KOG1803|consen 235 CAPSNVAVDNIVERLTHLKL----------NLVRVGHPARLLESVADHSLDLLSNTKDNS-------------QNAKDIS 291 (649)
T ss_pred EcCchHHHHHHHHHhccccc----------chhhcCchhhhhhhhhhhHHHHHHhcCchh-------------hhhhhhH
Confidence 99999999999999984443 799999999999999999999887553110 0011122
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCCccccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000248 1642 SNLEKLVDRIRFFEAKRANTKDGNSDPKNMLDDEVHKGDDVKLSDVELEAKLRKLYEQKKQIYRELGVAQVQEKKSYEET 1721 (1789)
Q Consensus 1642 ~kLekL~~~i~~~ea~R~~~~~g~~~~k~~l~~~w~kg~~~gis~~eLe~kL~kL~eqRrqL~~EL~~~~~~ekk~~re~ 1721 (1789)
++++...+... ..+ -...++.+.+++..+++ ++
T Consensus 292 k~~d~~~~~~~-------~tk---------------------------------~~~~~~~~~~~i~~lrk-------dl 324 (649)
T KOG1803|consen 292 KDIDILFQKNT-------KTK---------------------------------NDKLRKGIRKEIKLLRK-------DL 324 (649)
T ss_pred HHHHHHhhhhh-------ccc---------------------------------chHHHHHHHHHHHHHHH-------HH
Confidence 22222221100 000 01122333334433332 33
Q ss_pred HHHHHHHHHHHhccCcEEEEeCCCCCcCccccccccccCcccCCCCCCCCCCEEEEecCcccccccC
Q 000248 1722 KALKHKLRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQVVLVHE 1788 (1789)
Q Consensus 1722 e~~Rrkir~~IL~eAdIVCSTLSGSG~ells~c~eT~aaakf~~ll~~~~FDtVIIDEAAQAvElS~ 1788 (1789)
++.+++.-.+|+.+|+||+|||.||...++ .+..||+|||||||||+|++|
T Consensus 325 ~kre~~~v~eii~n~~VVfaTl~ga~~~~~----------------~~~~fD~vIIDEaaQamE~~c 375 (649)
T KOG1803|consen 325 RKRERKTVKEIISNSRVVFATLGGALDRLL----------------RKRTFDLVIIDEAAQAMEPQC 375 (649)
T ss_pred HHHHHHHHHHhhcccceEEEeccchhhhhh----------------cccCCCEEEEehhhhhccchh
Confidence 344567789999999999999999997443 356899999999999999987
|
|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
| >PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes [] | Back alignment and domain information |
|---|
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1807 consensus Helicases [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1801 consensus tRNA-splicing endonuclease positive effector (SEN1) [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
| >KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
| >KOG1804 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
| >PRK06851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR00609 recB exodeoxyribonuclease V, beta subunit | Back alignment and domain information |
|---|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
| >PRK10876 recB exonuclease V subunit beta; Provisional | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
| >KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type | Back alignment and domain information |
|---|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
| >PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) | Back alignment and domain information |
|---|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
| >PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C | Back alignment and domain information |
|---|
| >PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases | Back alignment and domain information |
|---|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
| >COG3973 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
| >PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A | Back alignment and domain information |
|---|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
| >PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX | Back alignment and domain information |
|---|
| >PHA02624 large T antigen; Provisional | Back alignment and domain information |
|---|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
| >PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins | Back alignment and domain information |
|---|
| >PRK09361 radB DNA repair and recombination protein RadB; Provisional | Back alignment and domain information |
|---|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
| >PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model | Back alignment and domain information |
|---|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
| >cd01394 radB RadB | Back alignment and domain information |
|---|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family | Back alignment and domain information |
|---|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01618 phage_P_loop phage nucleotide-binding protein | Back alignment and domain information |
|---|
| >PRK13909 putative recombination protein RecB; Provisional | Back alignment and domain information |
|---|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A | Back alignment and domain information |
|---|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK00131 aroK shikimate kinase; Reviewed | Back alignment and domain information |
|---|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
| >PRK05541 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PHA02774 E1; Provisional | Back alignment and domain information |
|---|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
| >TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family | Back alignment and domain information |
|---|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
| >PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
|---|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK09302 circadian clock protein KaiC; Reviewed | Back alignment and domain information |
|---|
| >PRK14527 adenylate kinase; Provisional | Back alignment and domain information |
|---|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
| >KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I | Back alignment and domain information |
|---|
| >cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate | Back alignment and domain information |
|---|
| >PRK06762 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein [] | Back alignment and domain information |
|---|
| >PRK04040 adenylate kinase; Provisional | Back alignment and domain information |
|---|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H | Back alignment and domain information |
|---|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
| >PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins | Back alignment and domain information |
|---|
| >PRK04301 radA DNA repair and recombination protein RadA; Validated | Back alignment and domain information |
|---|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) | Back alignment and domain information |
|---|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >TIGR02236 recomb_radA DNA repair and recombination protein RadA | Back alignment and domain information |
|---|
| >PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies | Back alignment and domain information |
|---|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK00889 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
| >PF13479 AAA_24: AAA domain | Back alignment and domain information |
|---|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK14531 adenylate kinase; Provisional | Back alignment and domain information |
|---|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
| >cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS) | Back alignment and domain information |
|---|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PLN02200 adenylate kinase family protein | Back alignment and domain information |
|---|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
| >COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >CHL00081 chlI Mg-protoporyphyrin IX chelatase | Back alignment and domain information |
|---|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
| >TIGR02012 tigrfam_recA protein RecA | Back alignment and domain information |
|---|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB | Back alignment and domain information |
|---|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins | Back alignment and domain information |
|---|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
| >TIGR00764 lon_rel lon-related putative ATP-dependent protease | Back alignment and domain information |
|---|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
| >PRK13947 shikimate kinase; Provisional | Back alignment and domain information |
|---|
| >PF12846 AAA_10: AAA-like domain | Back alignment and domain information |
|---|
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
| >PRK06696 uridine kinase; Validated | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Length = 802 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 6e-24
Identities = 56/268 (20%), Positives = 92/268 (34%), Gaps = 46/268 (17%)
Query: 1238 DENRVHCKLKEVPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWEDMYYGSLSVLS 1297
D + + + +Q ++ + PL+ E E +SV
Sbjct: 169 DAPEEQEAIPPLLLRYQDAYEYQRSYGPLIKLEADYDKQLK-------ESQALEHISVSW 221
Query: 1298 VERVDDFHLVRFVHDDNDSVTSKIFSENDLVLLTRVSPQKTPHD-VHMVGKVERRERDNN 1356
+++ HL F +S K+ + D ++L Q + + ++ +D
Sbjct: 222 SLALNNRHLASFTLSTFESNELKV-AIGDEMILWYSGMQHPDWEGRGYIVRLPNSFQD-- 278
Query: 1357 RRSSILLIRFYLQNGSVRLNQARRNLLERSKWHATLIMSITPQLREFHALSSLK------ 1410
F L+ ++ ++ + + A I T R AL
Sbjct: 279 --------TFTLE---LKPSKTPPPTHLTTGFTAEFIWKGTSYDRMQDALKKFAIDKKSI 327
Query: 1411 SIPLLPIIL--NPVNVSRGYNESRELDLGKLSQLQQILKTSFNESQLQAISVAIGLSSSW 1468
S L IL V++S +E + +QL N SQ A+S +
Sbjct: 328 SGYLYYKILGHQVVDISFDVPLPKEFSIPNFAQL--------NSSQSNAVSHVL------ 373
Query: 1469 KKDCELSLIQGPPGTGKTRTIVAIVSAL 1496
LSLIQGPPGTGKT T IV L
Sbjct: 374 --QRPLSLIQGPPGTGKTVTSATIVYHL 399
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Length = 802 | Back alignment and structure |
|---|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Length = 802 | Back alignment and structure |
|---|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Length = 624 | Back alignment and structure |
|---|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Length = 624 | Back alignment and structure |
|---|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Length = 800 | Back alignment and structure |
|---|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Length = 800 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Length = 608 | Back alignment and structure |
|---|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Length = 459 | Back alignment and structure |
|---|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Length = 574 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1789 | |||
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 99.26 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 99.13 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 98.9 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 98.66 | |
| d1w36b1 | 485 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 97.63 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 97.33 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 97.13 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 96.96 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 96.85 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 96.73 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 96.66 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 96.65 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 96.63 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 96.31 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 96.26 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 96.24 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 96.22 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.14 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 96.07 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.98 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 95.95 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.86 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.83 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.76 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.48 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.37 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 95.36 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 95.33 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 95.26 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.19 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.17 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.13 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.08 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 94.94 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 94.78 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.64 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.51 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.37 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.36 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 94.34 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 94.28 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.01 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.96 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 93.95 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.75 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.7 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.62 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 93.17 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.13 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.12 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.43 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 92.33 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 91.91 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 91.47 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.42 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 91.37 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 90.92 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 90.65 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 90.54 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 89.99 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 89.54 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 89.38 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 89.3 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 88.97 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 88.89 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 88.79 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 88.73 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 88.66 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 87.89 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 87.82 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 87.75 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 87.5 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 87.38 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.99 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 86.84 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 86.83 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 86.81 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 86.72 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.65 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 86.61 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 86.55 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 86.3 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 86.11 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 86.09 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 86.01 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 85.63 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 85.48 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 85.46 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 85.41 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 85.07 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 84.44 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 84.3 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 84.24 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 84.12 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 83.43 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 83.17 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 83.02 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 82.5 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 82.28 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 81.81 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 81.18 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 80.14 |
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=1.3e-11 Score=99.54 Aligned_cols=70 Identities=31% Similarity=0.441 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 79998999999998049998667761578578999715689999999996038997545557665558887665047999
Q 000248 1449 SFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIA 1528 (1789)
Q Consensus 1449 ~LNeSQleAI~sALs~~~~~~~~~gISLIQGPPGTGKTkTIvgLIsaLLs~~~~~~s~~~~~~~s~~~~rp~~s~s~ava 1528 (1789)
.+++.|..|+..++.+ +|++|+||||||||+|+..++..++...
T Consensus 148 ~~~~~Q~~A~~~al~~--------~~~vI~G~pGTGKTt~i~~~l~~l~~~~---------------------------- 191 (359)
T d1w36d1 148 DEINWQKVAAAVALTR--------RISVISGGPGTGKTTTVAKLLAALIQMA---------------------------- 191 (359)
T ss_dssp TSCCHHHHHHHHHHTB--------SEEEEECCTTSTHHHHHHHHHHHHHHTC----------------------------
T ss_pred CCCCHHHHHHHHHHCC--------CEEEEECCCCCCCEEHHHHHHHHHHHHH----------------------------
T ss_conf 5663899999999708--------8599976898875216999999999987----------------------------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 88888999753112210112454444687199990755899999999882
Q 000248 1529 RAWQDAALARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRISK 1578 (1789)
Q Consensus 1529 r~W~d~alarql~~d~~~~~~s~~~~~k~RILVCAPSNAAVDEIV~RLlk 1578 (1789)
..++.+|++|||||.|.+++.+++..
T Consensus 192 ------------------------~~~~~~I~l~ApTgkAA~~L~e~~~~ 217 (359)
T d1w36d1 192 ------------------------DGERCRIRLAAPTGKAAARLTESLGK 217 (359)
T ss_dssp ------------------------SSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred ------------------------HCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf ------------------------52698289843759999999988877
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| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
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| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
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| >d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
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| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
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| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
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| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
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| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
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| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
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| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
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| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
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| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
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| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
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| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
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| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
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| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
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| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
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| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
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| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
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| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
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| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
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| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
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| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
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| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
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| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
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| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
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| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
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| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
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| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
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| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
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| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
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| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
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| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
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| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
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| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
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| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
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| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
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| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
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| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
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| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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