Citrus Sinensis ID: 000251
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1784 | 2.2.26 [Sep-21-2011] | |||||||
| Q8WWQ0 | 1821 | PH-interacting protein OS | yes | no | 0.315 | 0.309 | 0.323 | 1e-80 | |
| Q8VDD9 | 1821 | PH-interacting protein OS | yes | no | 0.315 | 0.309 | 0.322 | 1e-80 | |
| Q9NSI6 | 2320 | Bromodomain and WD repeat | no | no | 0.318 | 0.245 | 0.314 | 6e-80 | |
| Q921C3 | 2304 | Bromodomain and WD repeat | no | no | 0.325 | 0.251 | 0.314 | 3e-79 | |
| Q6RI45 | 1802 | Bromodomain and WD repeat | no | no | 0.325 | 0.322 | 0.312 | 1e-73 | |
| A2AHJ4 | 1799 | Bromodomain and WD repeat | no | no | 0.325 | 0.322 | 0.306 | 1e-72 | |
| Q54MP8 | 2200 | Bromodomain and WD repeat | yes | no | 0.155 | 0.126 | 0.276 | 3e-30 | |
| P25382 | 515 | Ribosome assembly protein | yes | no | 0.176 | 0.609 | 0.235 | 3e-20 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.200 | 0.234 | 0.255 | 7e-20 | |
| Q00808 | 1356 | Vegetative incompatibilit | no | no | 0.206 | 0.271 | 0.247 | 1e-19 |
| >sp|Q8WWQ0|PHIP_HUMAN PH-interacting protein OS=Homo sapiens GN=PHIP PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 303 bits (775), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 228/704 (32%), Positives = 328/704 (46%), Gaps = 141/704 (20%)
Query: 78 EVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS 137
E+YFLI FL GPC + E+ E +LLPRR W G P +
Sbjct: 14 ELYFLIARFLEDGPCQQAAQVLIREVAEKELLPRRTD-W-------------TGKEHPRT 59
Query: 138 YNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAA-DVPTLLGRGSFSLLSY 196
Y LV+ Y H+ DHL+++ +L ++ + P + V TLLG G SLL
Sbjct: 60 YQNLVKYYRHLAPDHLLQICHRL--------GPLLEQEIPQSVPGVQTLLGAGRQSLLRT 111
Query: 197 DRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGF-----TRHHRAPSIRAACYAIA 251
++ H+ W +G L + G + PSI ++
Sbjct: 112 NKS---------CKHVVW--------KGSALAALHCGRPPESPVNYGSPPSIADTLFSRK 154
Query: 252 ----------KPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET 301
P+ + Q M+ KR+ GH ++VYC FDR+GR + TGSDD LVKIW+ +
Sbjct: 155 LNGKYRLERLVPTAVYQHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDD 214
Query: 302 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 361
LA+ RGH +I+D+AV+ N ++A+ S D +IRVW L P++VL+GH+A++T++
Sbjct: 215 GRLLATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQ 274
Query: 362 FSPR-PGSVYQLLSSSDDGTC--RIWDARYSQFSPR--IYIPRPSDAVAGRNMAPSSSAG 416
FSP GS L S+ DGT +WDA + +PR + RP V
Sbjct: 275 FSPLCSGSKRYLSSTGADGTICFWLWDAGTLKINPRPAKFTERPRPGV------------ 322
Query: 417 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 476
Q+ C +F+A G TGS+D + RV+ S QP +I L H + V+ +
Sbjct: 323 ----QMICSSFSAGGMFLATGSTDHIIRVYFF------GSGQP-EKISELEFHTDKVDSI 371
Query: 477 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 536
QFS ++RF V+ SRDG+A IW + +R K+
Sbjct: 372 QFSN--TSNRF------------------------VSGSRDGTARIW--QFKRREWKSIL 403
Query: 537 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 596
A P G +I T V M+ W + V+ A+ + + VWN+
Sbjct: 404 LDMATR--------PAGQNLQGIEDKI--TKMKVTMVAWDRHDNTVITAVNNMTLKVWNS 453
Query: 597 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLV 656
G L+H L GH + +VL+ HPF+PR+ SAG+DG IVWD+ G+ IR Y F ++
Sbjct: 454 YTGQLIHVLMGHEDEVFVLEPHPFDPRVLFSAGHDGNVIVWDLARGVKIRSY----FNMI 509
Query: 657 DG---------KFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQ-FFLGDYRPLVQD 706
+G K SPDG +D G L I G S+ D DQ FF DYRPL++D
Sbjct: 510 EGQGHGAVFDCKCSPDGQHFACTDSHGHLLIFGFGSS-SKYDKIADQMFFHSDYRPLIRD 568
Query: 707 TYGNVLDQETQLAPHRRNLQDP--LCDSAMIPYPEPYQTMYQQR 748
VLD++TQ APH L P L D P+P YQ + R
Sbjct: 569 ANNFVLDEQTQQAPH---LMPPPFLVDVDGNPHPSRYQRLVPGR 609
|
Probable regulator of the insulin and insulin-like growth factor signaling pathways. Stimulates cell proliferation through regulation of cyclin transcription and has an anti-apoptotic activity through AKT1 phosphorylation and activation. Plays a role in the regulation of cell morphology and cytoskeletal organization. Homo sapiens (taxid: 9606) |
| >sp|Q8VDD9|PHIP_MOUSE PH-interacting protein OS=Mus musculus GN=Phip PE=1 SV=2 | Back alignment and function description |
|---|
Score = 303 bits (775), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 227/704 (32%), Positives = 328/704 (46%), Gaps = 141/704 (20%)
Query: 78 EVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS 137
E+YFLI FL GPC + E+ E +LLPRR W G P +
Sbjct: 14 ELYFLIARFLEDGPCQQAAQVLIREVAEKELLPRRTD-W-------------TGKEHPRT 59
Query: 138 YNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAA-DVPTLLGRGSFSLLSY 196
Y LV+ Y H+ DHL+++ +L ++ + P + V TLLG G SLL
Sbjct: 60 YQNLVKYYRHLAPDHLLQICHRL--------GPLLEQEIPQSVPGVQTLLGAGRQSLLRT 111
Query: 197 DRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGF-----TRHHRAPSIRAACYAIA 251
++ H+ W +G L + G + PSI ++
Sbjct: 112 NKS---------CKHVVW--------KGSALAALHCGRPPESPVNYGSPPSIADTLFSRK 154
Query: 252 ----------KPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET 301
P+ + Q M+ KR+ GH ++VYC FDR+GR + TGSDD LVKIW+ +
Sbjct: 155 LNGKYRLERLVPTAVYQHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDD 214
Query: 302 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 361
LA+ RGH +I+D+AV+ N ++A+ S D +IRVW L P++VL+GH+A++T++
Sbjct: 215 GRLLATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQ 274
Query: 362 FSPR-PGSVYQLLSSSDDGTC--RIWDARYSQFSPR--IYIPRPSDAVAGRNMAPSSSAG 416
FSP GS L S+ DGT +WDA + +PR + RP V
Sbjct: 275 FSPLCSGSKRYLSSTGADGTICFWLWDAGTLKINPRPTKFTERPRPGV------------ 322
Query: 417 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 476
Q+ C +F+A G TGS+D + RV+ S QP +I L H + V+ +
Sbjct: 323 ----QMICSSFSAGGMFLATGSTDHIIRVYFF------GSGQP-EKISELEFHTDKVDSI 371
Query: 477 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 536
QFS ++RF V+ SRDG+A IW + +R K+
Sbjct: 372 QFSN--TSNRF------------------------VSGSRDGTARIW--QFKRREWKSIL 403
Query: 537 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 596
A P G +I T V M+ W + V+ A+ + + VWN+
Sbjct: 404 LDMATR--------PAGQNLQGIEDKI--TKMKVTMVAWDRHDNTVITAVNNMTLKVWNS 453
Query: 597 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLV 656
G L+H L GH + +VL+ HPF+PR+ SAG+DG IVWD+ G+ +R Y F ++
Sbjct: 454 YTGQLIHVLMGHEDEVFVLEPHPFDPRVLFSAGHDGNVIVWDLARGVKVRSY----FNMI 509
Query: 657 DG---------KFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQ-FFLGDYRPLVQD 706
+G K SPDG +D G L I G S+ D DQ FF DYRPL++D
Sbjct: 510 EGQGHGAVFDCKCSPDGQHFACTDSHGHLLIFGFGSS-SKYDKIADQMFFHSDYRPLIRD 568
Query: 707 TYGNVLDQETQLAPHRRNLQDP--LCDSAMIPYPEPYQTMYQQR 748
VLD++TQ APH L P L D P+P YQ + R
Sbjct: 569 ANNFVLDEQTQQAPH---LMPPPFLVDVDGNPHPSRYQRLVPGR 609
|
Probable regulator of the insulin and insulin-like growth factor signaling pathways. Stimulates cell proliferation through regulation of cyclin transcription and has an anti-apoptotic activity through AKT1 phosphorylation and activation. Plays a role in the regulation of cell morphology and cytoskeletal organization. Mus musculus (taxid: 10090) |
| >sp|Q9NSI6|BRWD1_HUMAN Bromodomain and WD repeat-containing protein 1 OS=Homo sapiens GN=BRWD1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 300 bits (769), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 219/697 (31%), Positives = 330/697 (47%), Gaps = 128/697 (18%)
Query: 78 EVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS 137
E+YFLI +LS GPC R EL ++QLLP+R W G+E++ S
Sbjct: 17 ELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLD-W-------EGNEHNR------S 62
Query: 138 YNKLVERYPHIEKDHLVKLLKQL--IINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLS 195
Y +LV H+ DHL+++ +++ +++ P P+ + V +LLG G SLL
Sbjct: 63 YEELVLSNKHVAPDHLLQICQRIGPMLDKEIP---------PSISRVTSLLGAGRQSLLR 113
Query: 196 YDRD------KGQNEIDHPPAHM-RWPHMYADQVRGLGLREIGGGFTRHHRAPSIRA-AC 247
+D KG H R P M + L EI HR + +
Sbjct: 114 TAKDCRHTVWKGSA---FAALHRGRPPEMPVNYGSPPNLVEI-------HRGKQLTGCST 163
Query: 248 YAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS 307
++ A P TM Q ++ +R+ GH +AVYC FDR+G + TGSDD LVKIWS L++
Sbjct: 164 FSTAFPGTMYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDCLVKIWSTHNGRLLST 223
Query: 308 CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRP- 366
RGH +I+D+AV+ N ++A+ S D IIRVW L P++VL+GHT ++T++ FSP
Sbjct: 224 LRGHSAEISDMAVNYENTMIAAGSCDKIIRVWCLRTCAPVAVLQGHTGSITSLQFSPMAK 283
Query: 367 GSVYQLLSSSDDGTCRI--WDARYSQFSPR--IYIPRPSDAVAGRNMAPSSSAGPQSHQI 422
GS ++S+ DGT WD +FSPR + +P V Q+
Sbjct: 284 GSQRYMVSTGADGTVCFWQWDLESLKFSPRPLKFTEKPRPGV----------------QM 327
Query: 423 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 482
C +F+ G TGS+D + R++ + +I L H + V+ +QF C
Sbjct: 328 LCSSFSVGGMFLATGSTDHVIRMYFL-------GFEAPEKIAELESHTDKVDSIQF--CN 378
Query: 483 VASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 542
RF ++ SRDG+A IW R + ++ A
Sbjct: 379 NGDRF------------------------LSGSRDGTARIW--RFEQLEWRSILLDMATR 412
Query: 543 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV 602
+ +R + P+ V MI W+ ++ V+ A+ D + VWN+ G L+
Sbjct: 413 I---------SGDLSSEEERFM-KPK-VTMIAWNQNDSIVVTAVNDHVLKVWNSYTGQLL 461
Query: 603 HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG---- 658
H+L GH + +VL+ HPF+ RI +SAG+DG +WDI +G ++ Y F +++G
Sbjct: 462 HNLMGHADEVFVLETHPFDSRIMLSAGHDGSIFIWDITKGTKMKHY----FNMIEGQGHG 517
Query: 659 -----KFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLD 713
KFS DG +D G L I G + + FF DYRPL++D+ VLD
Sbjct: 518 AVFDCKFSQDGQHFACTDSHGHLLIFGFGCSKPYEKIPDQMFFHTDYRPLIRDSNNYVLD 577
Query: 714 QETQLAPHRRNLQDP--LCDSAMIPYPEPYQTMYQQR 748
++TQ APH L P L D P+P YQ + R
Sbjct: 578 EQTQQAPH---LMPPPFLVDVDGNPHPTKYQRLVPGR 611
|
May be a transcriptional activator. May be involved in chromatin remodeling (By similarity). Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Homo sapiens (taxid: 9606) |
| >sp|Q921C3|BRWD1_MOUSE Bromodomain and WD repeat-containing protein 1 OS=Mus musculus GN=Brwd1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 298 bits (762), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 223/708 (31%), Positives = 331/708 (46%), Gaps = 128/708 (18%)
Query: 67 PAELDVDVDLREVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGD 126
PA V + E+YFLI +LS GPC R EL ++QLLP+R W G+
Sbjct: 6 PARRPVPLIESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLD-W-------EGN 57
Query: 127 ENDDGMSFPLSYNKLVERYPHIEKDHLVKLLKQL--IINTSSPSRAMIGGDAPNAADVPT 184
E++ SY +LV H+ DHL+++ +++ +++ P P+ + V +
Sbjct: 58 EHNR------SYEELVLSNKHVAPDHLLQICQRIGPMLDKEVP---------PSISRVTS 102
Query: 185 LLGRGSFSLLSYDRD------KGQNEIDHPPAHM-RWPHMYADQVRGLGLREIGGGFTRH 237
LLG G SLL +D KG H R P M + L EI
Sbjct: 103 LLGAGRQSLLRTAKDCRHTVWKGSA---FAALHRGRPPEMPVNYGPPPSLVEI------- 152
Query: 238 HRAPSIRA-ACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKI 296
HR + + ++ A P TM Q ++ +R+ GH +AVYC FDR+G + TGSDD LVKI
Sbjct: 153 HRGRQLTGCSTFSTAFPGTMYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDCLVKI 212
Query: 297 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAA 356
WS L++ RGH +I+D+AV+ N L+A+ S D IIRVW L P++VL+GHT +
Sbjct: 213 WSTHNGRLLSTLRGHSAEISDMAVNYENTLIAAGSCDKIIRVWCLRTCAPVAVLQGHTGS 272
Query: 357 VTAIAFSPRP-GSVYQLLSSSDDGTCRI--WDARYSQFSPR--IYIPRPSDAVAGRNMAP 411
+T++ FSP G ++S+ DGT WD +FSPR + +P V
Sbjct: 273 ITSLQFSPMAKGPQRYMVSTGADGTVCFWQWDLESLKFSPRPLKFTEKPRPGV------- 325
Query: 412 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN 471
Q+ C +F+ G TGS+D + R++ D P +I L H +
Sbjct: 326 ---------QMLCSSFSVGGMFLATGSTDHVIRMYFL------GFDAP-EKIAELESHTD 369
Query: 472 DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 531
V+ +QF C RF ++ SRDG+A IW
Sbjct: 370 KVDSIQF--CNNGDRF------------------------LSGSRDGTARIW-------- 395
Query: 532 PKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRI 591
R+ Q + + P+ V MI W+ D+ V+ A+ D +
Sbjct: 396 ----RFEQLEWRSILLDMSARISGDTSSEEERFMKPK-VTMIAWNQDDSTVVTAVNDHVL 450
Query: 592 CVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 651
VW++ G L+H+L GH + +VL+ HPF+ RI +SAG+DG +WDI +GI ++ Y
Sbjct: 451 KVWSSYTGQLLHNLLGHADEVFVLETHPFDSRIMLSAGHDGSIFIWDITKGIKMKHY--- 507
Query: 652 RFRLVDG---------KFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRP 702
F +++G KFS DG +D G L I G + + FF DYRP
Sbjct: 508 -FNMIEGQGHGAVFDCKFSQDGQHFACTDSHGHLLIFGFGCSKPYEKIPDQMFFHTDYRP 566
Query: 703 LVQDTYGNVLDQETQLAPHRRNLQDP--LCDSAMIPYPEPYQTMYQQR 748
L++D+ VLD++TQ APH L P L D P+P +Q + R
Sbjct: 567 LIRDSNNYVLDEQTQQAPH---LMPPPFLVDVDGNPHPTKFQRLVPGR 611
|
May be a transcriptional activator. May be involved in chromatin remodeling. Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Mus musculus (taxid: 10090) |
| >sp|Q6RI45|BRWD3_HUMAN Bromodomain and WD repeat-containing protein 3 OS=Homo sapiens GN=BRWD3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 280 bits (715), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 215/688 (31%), Positives = 317/688 (46%), Gaps = 107/688 (15%)
Query: 78 EVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS 137
E+Y+LI FL +GPC+++ EL EHQL+PRR W +G S
Sbjct: 11 ELYYLIARFLQSGPCNKSAQVLVQELEEHQLIPRRLD-W-------------EGKEHRRS 56
Query: 138 YNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAA-DVPTLLGRGSFSLLSY 196
+ LV HI D+L+K+ +++ ++ + P + V TLLG G SLL
Sbjct: 57 FEDLVAANAHIPPDYLLKICERI--------GPLLDKEIPQSVPGVQTLLGVGRQSLLRD 108
Query: 197 DRDKGQ---NEIDHPPAHM-RWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAK 252
+D N H R P + + V+ + I R S +
Sbjct: 109 AKDCKSTLWNGSAFAALHRGRPPELPVNYVKPPNVVNITSA--RQLTGCSRFGHIF---- 162
Query: 253 PSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHE 312
PS+ Q ++ KR+ GH ++VYC FDRSGR + TGSDD LVKIW+ + LA+ RGH
Sbjct: 163 PSSAYQHIKMHKRILGHLSSVYCVAFDRSGRRIFTGSDDCLVKIWATDDGRLLATLRGHS 222
Query: 313 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP-RPGSVYQ 371
+I+D+AV+ N L+A+ S D ++RVW L P++VL+GH+A++T+I F P G+
Sbjct: 223 AEISDMAVNYENTLIAAGSCDKVVRVWCLRTCAPVAVLQGHSASITSIQFCPSTKGTNRY 282
Query: 372 LLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 431
L S+ DGT W R RP S G QI C +F++ G
Sbjct: 283 LTSTGADGTICFWQWHVKTMKFR---DRPV------KFTERSRPGV---QISCSSFSSGG 330
Query: 432 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 491
TGS+D + R++ S+ P +I L H + V VQF + RF
Sbjct: 331 MFITTGSTDHVIRIYYL------GSEVP-EKIAELESHTDKVVAVQFCNNGDSLRF---- 379
Query: 492 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMP 551
V+ SRDG+A IW + W ++ L +
Sbjct: 380 --------------------VSGSRDGTARIW-------QYQQQEW-KSIVLDMATKMTG 411
Query: 552 PQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES 611
P G + T V M+ W + V+ A+ + + VWN+ G L+H+L+GH +
Sbjct: 412 NNLPSGEDK----ITKLKVTMVAWDRYDTTVITAVNNFLLKVWNSITGQLLHTLSGHDDE 467
Query: 612 TYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG---------KFSP 662
+VL+ HPF+ RI +SAG+DG +WD+ G IR Y F +++G KFSP
Sbjct: 468 VFVLEAHPFDQRIILSAGHDGNIFIWDLDRGTKIRNY----FNMIEGQGHGAVFDCKFSP 523
Query: 663 DGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHR 722
DG +D G L + G + + FF DYRPL++D VLD++TQ APH
Sbjct: 524 DGNHFACTDSHGHLLLFGFGCSKYYEKIPDQMFFHTDYRPLIRDANNYVLDEQTQQAPH- 582
Query: 723 RNLQDP--LCDSAMIPYPEPYQTMYQQR 748
L P L D P+P +Q + R
Sbjct: 583 --LMPPPFLVDVDGNPHPTKFQRLVPGR 608
|
Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Homo sapiens (taxid: 9606) |
| >sp|A2AHJ4|BRWD3_MOUSE Bromodomain and WD repeat-containing protein 3 OS=Mus musculus GN=Brwd3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 276 bits (705), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 211/688 (30%), Positives = 317/688 (46%), Gaps = 107/688 (15%)
Query: 78 EVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS 137
E+Y+LI FL +GPC+++ EL EHQL+PRR W +G S
Sbjct: 11 ELYYLIARFLQSGPCNKSAQVLVQELEEHQLIPRRLD-W-------------EGKEHRRS 56
Query: 138 YNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAA-DVPTLLGRGSFSLLSY 196
+ LV HI D+L+K+ +++ ++ + P + V TLLG G SLL
Sbjct: 57 FEDLVAANAHIPPDYLLKICERI--------GPLLDKEIPQSVPGVQTLLGVGRQSLLRD 108
Query: 197 DRDKGQ---NEIDHPPAHM-RWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAK 252
+D N H R P + + V+ + I R S + +
Sbjct: 109 AKDCKSTLWNGSAFAALHRGRPPELPVNYVKPPNVVNITSA--RQLTGCSRFSHVF---- 162
Query: 253 PSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHE 312
PS+ Q ++ KR+ GH ++VYC FDRSGR + TGSDD LVKIW+ + LA+ RGH
Sbjct: 163 PSSAYQHIKMHKRILGHLSSVYCVAFDRSGRRIFTGSDDCLVKIWATDDGRLLATLRGHS 222
Query: 313 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP-RPGSVYQ 371
+I+D+AV+ N L+A+ S D ++RVW L P++VL+GH+A++T+I F P G+
Sbjct: 223 AEISDMAVNYENTLIAAGSCDKVVRVWCLRTCAPVAVLQGHSASITSIQFCPSTKGTTRY 282
Query: 372 LLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 431
L S+ DGT W R R + + + P QI C +F++ G
Sbjct: 283 LTSTGADGTICFWQWHVKTMKFR-----------DRPVKFTERSRP-GVQISCSSFSSGG 330
Query: 432 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 491
TGS+D + R++ S+ P +I L H + V VQF + RF
Sbjct: 331 MFITTGSTDHVIRIYYL------GSEIP-EKIAELESHTDKVVAVQFCNNGDSLRF---- 379
Query: 492 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMP 551
V+ SRDG+A IW + ++ K+ A +
Sbjct: 380 --------------------VSGSRDGTARIW--QYQQQEWKSIVLDMATKMS------- 410
Query: 552 PQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES 611
T V M+ W + V+ A+ + + VWN+ G L+H+L+GH +
Sbjct: 411 ---GNNLTSAEDKVTKLKVTMVAWDRYDTTVITAVNNFLLKVWNSVTGQLLHTLSGHDDE 467
Query: 612 TYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG---------KFSP 662
+VL+ HPF+ RI +SAG+DG +WD+ G IR Y F +++G KFSP
Sbjct: 468 VFVLEAHPFDQRIILSAGHDGNIFIWDLDRGTKIRNY----FNMIEGQGHGAVFDCKFSP 523
Query: 663 DGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHR 722
DG +D G L + G + + FF DYRPL++D VLD++TQ APH
Sbjct: 524 DGNHFACTDSHGHLLLFGFGCSKYYEKIPDQMFFHTDYRPLIRDANNYVLDEQTQQAPH- 582
Query: 723 RNLQDP--LCDSAMIPYPEPYQTMYQQR 748
L P L D P+P +Q + R
Sbjct: 583 --LMPPPFLVDVDGNPHPTKFQRLVPGR 608
|
Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Mus musculus (taxid: 10090) |
| >sp|Q54MP8|Y5837_DICDI Bromodomain and WD repeat-containing DDB_G0285837 OS=Dictyostelium discoideum GN=DDB_G0285837 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 153/333 (45%), Gaps = 55/333 (16%)
Query: 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 477
++++I N GT+ V S D+ ++W+ P ++ L GH + +Q
Sbjct: 549 KTNEITGTTMNKGGTLIV-ASVDSSLKIWSTLF-------NPPKLVNTLEGHPTTILALQ 600
Query: 478 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 537
+S + D IV+ S DG+ IIW H +W
Sbjct: 601 YSHGS--------------------------DAIVSGSYDGTVIIW------RHSGGPKW 628
Query: 538 TQA-YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 596
+++K P P+ ++ + ++WS D+RF++ + I VWN+
Sbjct: 629 DHVIFNIK---NTQRPNQANSHPK-KVARSKATFKNVIWSHDDRFIITTDYNM-IRVWNS 683
Query: 597 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS----R 652
DGS + HT YV HPF+ R+ MS+GYD + I+W I G I+ + + +
Sbjct: 684 LDGSFHLEMAEHTSEVYVTSCHPFDSRLIMSSGYDSQVILWSIETGEIIKKFVLQEPGFQ 743
Query: 653 FRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKY----DQFFLGDYRPLVQDTY 708
+++DG FSPDG I+++ G+ ++ G G + K +Q+FL DY PL++D
Sbjct: 744 CQILDGCFSPDGQKFIVTNSTGKWFMFELGLGSDINNLKKLVPNEQYFLTDYHPLIRDAN 803
Query: 709 GNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPY 741
GNVLD+ TQ PH + L + +PYP+ Y
Sbjct: 804 GNVLDELTQTPPHLM-PRAMLVNYQGLPYPDHY 835
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P25382|NLE1_YEAST Ribosome assembly protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSA4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 93/395 (23%), Positives = 167/395 (42%), Gaps = 81/395 (20%)
Query: 266 VRGHRNAVYCAIFD-RSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNN 324
+ GH + + C+ F + ++TG+ D +IW +T + + +GH + ++ S +
Sbjct: 139 IAGHGSTILCSAFAPHTSSRMVTGAGDNTARIWDCDTQTPMHTLKGHYNWVLCVSWSPDG 198
Query: 325 ALVASASNDCIIRVWRLPDGLPIS-VLRGHTAAVTAIAFSP----RPGSVYQLLSSSDDG 379
++A+ S D IR+W G + LRGH+ +T++++ P +PGS +L SSS DG
Sbjct: 199 EVIATGSMDNTIRLWDPKSGQCLGDALRGHSKWITSLSWEPIHLVKPGSKPRLASSSKDG 258
Query: 380 TCRIWD--ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 437
T +IWD +R Q++ ++G ++ + C + G ++ +G
Sbjct: 259 TIKIWDTVSRVCQYT-----------MSG-----------HTNSVSCVKWGGQGLLY-SG 295
Query: 438 SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 497
S D RVW D + I++L H + VN++ S + + K+ S
Sbjct: 296 SHDRTVRVW--------DINSQGRCINILKSHAHWVNHLSLSTDYALRIGAFDHTGKKPS 347
Query: 498 TPK------FKN-SWFCHDN------IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 544
TP+ +N C N +VT S D + +W P
Sbjct: 348 TPEEAQKKALENYEKICKKNGNSEEMMVTASDDYTMFLWNPLKSTK-------------- 393
Query: 545 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS 604
P R+ + VN + +S D R++++A D I +W+ DG + +
Sbjct: 394 --------------PIARMTGHQKLVNHVAFSPDGRYIVSASFDNSIKLWDGRDGKFIST 439
Query: 605 LTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639
GH S Y + + R+ +S D VWD+
Sbjct: 440 FRGHVASVYQV-AWSSDCRLLVSCSKDTTLKVWDV 473
|
Involved in processing and efficient intra-nuclear transport or pre-60S ribosomal subunits. Forms a complex with REA1 which is essential for ATP-dependent dissociation of a group of nonribosomal factors from the pre-60S particle. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 111/434 (25%), Positives = 172/434 (39%), Gaps = 76/434 (17%)
Query: 267 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 326
+GH VY F+ G + TGS D+ V++W + ++ C +GH + + SS+ A+
Sbjct: 987 QGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGAM 1046
Query: 327 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
+AS S+D +R+W + G + L+GHT+ V ++ FSP L S DD R+WD
Sbjct: 1047 LASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGA---MLASGGDDQIVRLWD- 1102
Query: 387 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 446
++ N + G S F F+ NG GSSD + R+W
Sbjct: 1103 -----------------ISSGN-CLYTLQGYTSWVRF-LVFSPNGVTLANGSSDQIVRLW 1143
Query: 447 NACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVAS-------RFSLADSSKEDS 497
+ + L GH N VN V FS G +AS R SSK
Sbjct: 1144 DISSKKC---------LYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLY 1194
Query: 498 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 557
+ SW N V + DGS + S S W
Sbjct: 1195 ILQGHTSWV---NSVVFNPDGSTL----ASGSSDQTVRLWEI------------------ 1229
Query: 558 GPRQRILPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTY 613
+ L T +G VN +V++ D + + D + +W+ + +H+ GHT +
Sbjct: 1230 -NSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTN--W 1286
Query: 614 VLDVHPFNPRIAMSAGYDGKTIV--WDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSD 671
V V FNP +M A G V W+I + ++ + FSPDG +
Sbjct: 1287 VNSV-AFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGS 1345
Query: 672 DVGQLYILNTGQGE 685
D + + + GE
Sbjct: 1346 DDQTVRLWSISSGE 1359
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 106/428 (24%), Positives = 168/428 (39%), Gaps = 60/428 (14%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN 323
+ + GH ++V F G+ V +GSDD+ +KIW + + GH G + +A S +
Sbjct: 835 QTLEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPD 894
Query: 324 NALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
VAS S+D I++W G L GH V ++AFSP V S SDD T +I
Sbjct: 895 RERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRV---ASGSDDHTIKI 951
Query: 384 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 443
WDA + + + S+ + AF+ +G +GS D
Sbjct: 952 WDA--------------ASGTCTQTLEGHGSS------VLSVAFSPDGQRVASGSGDKTI 991
Query: 444 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVASRFSLADSSKEDSTPKF 501
++W+ + L GH V V FS G VA S +D T K
Sbjct: 992 KIWDTASGTCTQT---------LEGHGGSVWSVAFSPDGQRVA-------SGSDDKTIKI 1035
Query: 502 KNSWFCHDNIVTCSRDG-----SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 556
W T + +G ++++ P +R A + + +K+
Sbjct: 1036 ---WDTASGTCTQTLEGHGGWVQSVVFSPDGQR----VASGSDDHTIKI------WDAVS 1082
Query: 557 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLD 616
G Q + V + +S D + V + +D I +W+AA G+ +L GH + +
Sbjct: 1083 GTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVA 1142
Query: 617 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQL 676
P R+A S DG +WD G + E + FSPDG + +
Sbjct: 1143 FSPDGQRVA-SGSIDGTIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTI 1201
Query: 677 YILNTGQG 684
I +T G
Sbjct: 1202 KIWDTASG 1209
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1784 | ||||||
| 225431924 | 1756 | PREDICTED: uncharacterized protein LOC10 | 0.965 | 0.981 | 0.714 | 0.0 | |
| 356558137 | 1773 | PREDICTED: uncharacterized protein LOC10 | 0.956 | 0.962 | 0.628 | 0.0 | |
| 356532519 | 1777 | PREDICTED: uncharacterized protein LOC10 | 0.959 | 0.962 | 0.635 | 0.0 | |
| 225437555 | 1766 | PREDICTED: uncharacterized protein LOC10 | 0.955 | 0.964 | 0.616 | 0.0 | |
| 449433431 | 1729 | PREDICTED: uncharacterized protein LOC10 | 0.950 | 0.980 | 0.607 | 0.0 | |
| 42568419 | 1677 | WD40/YVTN repeat and Bromo-WDR9-I-like d | 0.922 | 0.980 | 0.592 | 0.0 | |
| 297795697 | 1662 | transducin family protein [Arabidopsis l | 0.912 | 0.979 | 0.593 | 0.0 | |
| 296083262 | 1569 | unnamed protein product [Vitis vinifera] | 0.660 | 0.750 | 0.732 | 0.0 | |
| 357449001 | 1844 | Bromodomain and WD repeat-containing pro | 0.957 | 0.926 | 0.525 | 0.0 | |
| 356501869 | 1719 | PREDICTED: uncharacterized protein LOC10 | 0.913 | 0.947 | 0.538 | 0.0 |
| >gi|225431924|ref|XP_002277060.1| PREDICTED: uncharacterized protein LOC100248159 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2382 bits (6172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1272/1780 (71%), Positives = 1436/1780 (80%), Gaps = 57/1780 (3%)
Query: 28 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 87
MAL+KYIPS DAPS +MKPLSFSSKV E QLA + S + DVD+DLREVYFLIMHFL
Sbjct: 1 MALQKYIPSGDAPSVSMKPLSFSSKVQEKVQLADPEGSPTMDADVDIDLREVYFLIMHFL 60
Query: 88 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 147
S GPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGL SGDENDDG SFPLSYNKLVERYPH
Sbjct: 61 SAGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLRSGDENDDGSSFPLSYNKLVERYPH 120
Query: 148 IEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDH 207
I KDHLVKLLKQLI++T+ PS+ MI G+ PNAADVPTLLG GSFSLL D DKG NE++
Sbjct: 121 IGKDHLVKLLKQLILSTTHPSQGMIRGNVPNAADVPTLLGTGSFSLLGNDMDKGHNEVNP 180
Query: 208 PPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR 267
PP HMRWPHM ADQVRGL LREIGGGFTRH+RAPSIRAACYA+AKPSTMVQKMQNIK++R
Sbjct: 181 PPIHMRWPHMQADQVRGLSLREIGGGFTRHNRAPSIRAACYAVAKPSTMVQKMQNIKKLR 240
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 327
GHRNAVYCAIFDR+GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV
Sbjct: 241 GHRNAVYCAIFDRTGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
Query: 328 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
AS+SNDCIIRVWRLPDGLPISVLRGHT AVTAIAFSPRP SVYQLLSSSDDGTCRIWDAR
Sbjct: 301 ASSSNDCIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSSVYQLLSSSDDGTCRIWDAR 360
Query: 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLAR--- 444
YSQFSPRIY+PRP D++AG+N PSSS GPQSHQIFCCAFNANGTVFVTGSSDTLAR
Sbjct: 361 YSQFSPRIYVPRPPDSIAGKNNVPSSSNGPQSHQIFCCAFNANGTVFVTGSSDTLARVHL 420
Query: 445 ---VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 501
VWNACK N D+SDQPNHE+D+LSGHENDVNYVQFSGCAV+SRFS+A+SSKE++ PKF
Sbjct: 421 MISVWNACKSNPDESDQPNHEMDILSGHENDVNYVQFSGCAVSSRFSVAESSKEENVPKF 480
Query: 502 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 561
KNSWF HDNIVTCSRDGSAIIWIPRSRRSH K RWT+AYHLKVPPPPMPPQPPRGGPRQ
Sbjct: 481 KNSWFTHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPPRGGPRQ 540
Query: 562 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 621
RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA DGSLVHSLTGHTESTYVLDVHPFN
Sbjct: 541 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHTESTYVLDVHPFN 600
Query: 622 PRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 681
PRIAMSAGYDGKTIVWDIWEG PIRIY+ +RF+LVDGKFSPDG SIILSDDVGQLYIL+T
Sbjct: 601 PRIAMSAGYDGKTIVWDIWEGTPIRIYDTARFKLVDGKFSPDGTSIILSDDVGQLYILST 660
Query: 682 GQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPY 741
GQGESQKDA YDQFFLGDYRPL+QDTYGNVLDQETQLAP+RRN+QD LCD+ MIPYPEPY
Sbjct: 661 GQGESQKDAMYDQFFLGDYRPLIQDTYGNVLDQETQLAPYRRNMQDLLCDATMIPYPEPY 720
Query: 742 QTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWE 801
Q+MYQQRRLGALGIEWRPSSL+LAVGPDF+LDQ YQ+ PL DLDV+IDPLPEFIDVMDWE
Sbjct: 721 QSMYQQRRLGALGIEWRPSSLRLAVGPDFNLDQDYQMLPLPDLDVLIDPLPEFIDVMDWE 780
Query: 802 PENEVQSDDNDSEYNVAEEYST-EEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRK 860
PENEVQ+DD DSEYNV EEYST E+GSLSS SSGD ECSAEDS+ + DGLRRSKRK
Sbjct: 781 PENEVQTDDTDSEYNVTEEYSTGGEQGSLSSNSSGDPECSAEDSDVENSHKDGLRRSKRK 840
Query: 861 KQKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRA 920
KQKAE EIMT SGRRVKRR LDE +GN+ N RTRKS + +K S + SS SKSLRPQRA
Sbjct: 841 KQKAETEIMTFSGRRVKRRNLDEFDGNSLRSN-RTRKSRSGRKVSHKNSSKSKSLRPQRA 899
Query: 921 AARNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKG 980
AARNA + FS++ G STDGED DGSEG+LSESES L+DS IES+ES SL NEQ KHSKG
Sbjct: 900 AARNALTLFSRMKGTSTDGEDEDGSEGDLSESESSLEDSNIESDESDGSLQNEQCKHSKG 959
Query: 981 KGISLDDSEDVTKL-DTPESHVNAG-IRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIG 1038
K +SLD+ ED+ K + PES +NAG RRLVLK P+RDSN+ L NQ ++G
Sbjct: 960 KEVSLDEFEDMDKQHEHPESCMNAGNRRRLVLKFPIRDSNRLLLAPE-----NQ-ADLVG 1013
Query: 1039 TSSEAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKI 1098
+SS+A QEA+E N N +S SS DANC +ERR RGQ +K+ED+L+L GYKDGKI
Sbjct: 1014 SSSKAPQEASEVNRNHLSSQDLGYSSSDANCNRIERRERGQPEKIEDHLDLFEGYKDGKI 1073
Query: 1099 RWGGVRARSSKRLKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDISCGEEI 1158
RWGGV+AR+SKRL++ E MP D + S +D E+ +NG +PEK+ IS EI
Sbjct: 1074 RWGGVKARTSKRLRVVEPMPSDTDARSRQCIDGHDATENTINGFQEPEKNYDRISPHSEI 1133
Query: 1159 TNCGDNTDEVPLKNVKNLSGENNDVYSGDASCK-EQQSGFSELNYYDE-SKCVNTTDEDT 1216
+ T ++ N ++ N V DA+ ++ S F+E YDE K VN DT
Sbjct: 1134 KYHVEETGKMAHMNGQHFG--NGAVEGLDATSNGKKHSSFNECMNYDEPPKQVNMVAGDT 1191
Query: 1217 TPYPNHLQNGTIQPSELKEILTPVSTKLRIRSKRILRDAD----------VENQNNG-CD 1265
NGT P LKE T STKLRIRSK+IL D + VE+ +NG CD
Sbjct: 1192 AASSVQHSNGTDHPPHLKESSTS-STKLRIRSKKILEDPEIPSDPKIKSSVEDWSNGRCD 1250
Query: 1266 ALHGSSLDIKPNSLPEVLESDGTNRTSSDRGA-DGSQRLNAQIDSTSEHDPLGSHSHSHD 1324
L S L+I EV + D T+R SD G +G + A I+ S S D
Sbjct: 1251 TLSESQLEIA-----EVPDCDDTDRPHSDHGDWNGLLKSEAAIEQNSR-------SVLQD 1298
Query: 1325 PLGSHSHSHSRKMFNVVYRRSKTNRDRTNSEGDGGGVGESTLNANNNN------FHESAT 1378
G +SH ++ KM+N VYRRS++ R RTNSEG+GGG+ EST NA+N+N FHE+ T
Sbjct: 1299 SQGLYSHVNN-KMYNAVYRRSRSYRTRTNSEGEGGGMEESTSNASNHNLDSGMDFHEATT 1357
Query: 1379 DGSRRTRSMGLKTTTCDPDNVSSNLRLEQHNQPEDMYSGHNR-STSRC-QLPHEEWGSSS 1436
DG+RRTRSMGLK TT DPD SNL+L + ED ++ S +R +LP EEW SSS
Sbjct: 1358 DGARRTRSMGLKATTRDPDVTCSNLKLRLGHGSEDTLKSVDKFSVNRSDELPCEEWMSSS 1417
Query: 1437 KMTVGLRSTRNRRTSYLFCDS--SPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEV 1494
+MTVGLRS RNRR SY D+ SP++RRK HQS +K SWLMLS H E RYIPQLGDEV
Sbjct: 1418 RMTVGLRSARNRRASYHVRDTSPSPMERRKPHQSSKKVSWLMLSMHVE-PRYIPQLGDEV 1476
Query: 1495 VYLRQGHQEYINYSGSREVGPWITVKGNIRAVEFCKVESLEYATASGSGDSCCKMTLKFI 1554
VYLRQGHQEYI YSGS E GPW +VKG IRAVEFCKVE LEY+ +GSGDSCCKMTL+F+
Sbjct: 1477 VYLRQGHQEYITYSGSHEAGPWTSVKGIIRAVEFCKVEGLEYSPFAGSGDSCCKMTLQFV 1536
Query: 1555 DPTSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWW 1614
DPTS V TF+LTLPEVT FPDFLVERTR+DAAIQRNWT RDKC+VWWKNE +EDGSWW
Sbjct: 1537 DPTSHVFGKTFKLTLPEVTSFPDFLVERTRYDAAIQRNWTSRDKCRVWWKNEGEEDGSWW 1596
Query: 1615 DGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNK 1674
DGR+LSVK +S EFPDSPW+RY ++Y++EPTETHLHSPWEL+D TQWEQP IDD++RNK
Sbjct: 1597 DGRILSVKARSPEFPDSPWDRYVIRYRSEPTETHLHSPWELYDIGTQWEQPHIDDESRNK 1656
Query: 1675 LLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEA 1734
LLS+ AKLEQS ++ QD YG+QKLKQVSQK+NF NRFPVPLSL+VIQSRL+N YYR +EA
Sbjct: 1657 LLSSLAKLEQSGDKPQDYYGIQKLKQVSQKSNFLNRFPVPLSLEVIQSRLKNQYYRSMEA 1716
Query: 1735 VKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1774
VKHD+ VMLSNAE+YF +N +LS K++RLS+ TR LSS+
Sbjct: 1717 VKHDVKVMLSNAETYFVKNAELSMKVRRLSEWFTRMLSSI 1756
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558137|ref|XP_003547364.1| PREDICTED: uncharacterized protein LOC100818665 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2160 bits (5598), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1140/1814 (62%), Positives = 1366/1814 (75%), Gaps = 108/1814 (5%)
Query: 28 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 87
MAL+KY PS +APS MK LSFSSKV + A+L ++ + +DVD+DLRE+YFLIMHFL
Sbjct: 1 MALQKYAPSGNAPSVNMKHLSFSSKVPKKAELDEANLNH--NMDVDIDLREIYFLIMHFL 58
Query: 88 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 147
S GPCH+T+ QFWNELLEHQLLPRRYHAWYSR+G SGD++DDG+SFPL+YN LVERY H
Sbjct: 59 SAGPCHKTHLQFWNELLEHQLLPRRYHAWYSRTGACSGDKDDDGLSFPLNYNMLVERYSH 118
Query: 148 IEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDH 207
IEKDHLVKLLKQL++NT+SPS M G+APNAADVPTLLG GSFSLLSYDRDK E+
Sbjct: 119 IEKDHLVKLLKQLLLNTASPSLGMNLGNAPNAADVPTLLGSGSFSLLSYDRDK-MKEVKW 177
Query: 208 PPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR 267
PP HMRWPHM A+QV GL LREIGGGF RHHRAPSIRAACYAIAKPSTMVQKMQNIKR+R
Sbjct: 178 PPPHMRWPHMKANQVHGLNLREIGGGFPRHHRAPSIRAACYAIAKPSTMVQKMQNIKRLR 237
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 327
GHRNAVYCAIFDR+GRYVITGSDDRLVKIWSMETAYCLASCRGH+GDITDLAVSSNNALV
Sbjct: 238 GHRNAVYCAIFDRAGRYVITGSDDRLVKIWSMETAYCLASCRGHDGDITDLAVSSNNALV 297
Query: 328 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
AS+SNDC+IRVWRLPDGLPISVLRGHT AVTAIAFSPRP +VYQLLSSSDDGTCRIWDAR
Sbjct: 298 ASSSNDCVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPNAVYQLLSSSDDGTCRIWDAR 357
Query: 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV-- 445
Y+Q SPR+Y+PRPSD+V G++ PSSS PQSHQIFCCAFNANGTVFVTGSSD LARV
Sbjct: 358 YTQSSPRLYVPRPSDSVIGKSNGPSSSTVPQSHQIFCCAFNANGTVFVTGSSDNLARVFL 417
Query: 446 --WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 503
WNACK + DD+ QP HEIDVLSGHENDVNYVQFSGCAVASRFS A++ KE++ PKFKN
Sbjct: 418 QVWNACKLSMDDTGQPVHEIDVLSGHENDVNYVQFSGCAVASRFSTAETWKEENIPKFKN 477
Query: 504 SWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 563
SW HDNIVTCSRDGSAIIWIP+SRRSH K+ RWT+AYHL+VPPPPMPPQP RGGPRQRI
Sbjct: 478 SWLNHDNIVTCSRDGSAIIWIPKSRRSHGKSGRWTRAYHLRVPPPPMPPQPQRGGPRQRI 537
Query: 564 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 623
LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA+DGSLVHSLTGHTESTYVLDVHPFNPR
Sbjct: 538 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPR 597
Query: 624 IAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 683
IAMSAGYDG+TIVWDIWEG+PIR YEISRF+LVDGKFSPDG SIILSDDVGQLYIL+TGQ
Sbjct: 598 IAMSAGYDGRTIVWDIWEGLPIRTYEISRFKLVDGKFSPDGTSIILSDDVGQLYILSTGQ 657
Query: 684 GESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQT 743
GESQKDAKYDQFFLGDYRPL+QDT+GNVLDQETQ+ P+RR+LQD LCDSAMIPYPEPYQ+
Sbjct: 658 GESQKDAKYDQFFLGDYRPLIQDTHGNVLDQETQIVPYRRSLQDLLCDSAMIPYPEPYQS 717
Query: 744 MYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPE 803
+QQRRLGALG EWRPSSL+LAVGPDFSLD Y + PLADLD++ +PLPEFID M+WEPE
Sbjct: 718 EFQQRRLGALGFEWRPSSLRLAVGPDFSLDPDYHMLPLADLDLLTEPLPEFIDAMEWEPE 777
Query: 804 NEVQSDDNDSEYNVAEEYSTE-EKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQ 862
EV SDD DSEYNV E++S++ EKG SS +SGDS CS ++SE + MD +RRSKRKKQ
Sbjct: 778 VEVFSDDTDSEYNVTEDFSSKGEKGCSSSNASGDSGCSTDNSEGEDTCMDNIRRSKRKKQ 837
Query: 863 KAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAA 922
K E E+MTSSGRRVKRR LDE +GN FG+ R+RK + QK+ RRKSS SKS RPQRAAA
Sbjct: 838 KTETEVMTSSGRRVKRRNLDERDGN-TFGSSRSRKGKSVQKTLRRKSSKSKSSRPQRAAA 896
Query: 923 RNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKGKG 982
RNA FSKITG TDGE+ D G+ S SES LQ+S I+S+ES +L NEQ +SKGK
Sbjct: 897 RNALHLFSKITGTPTDGEE-DSLVGDFSGSESTLQESNIDSDESDGTLQNEQLNYSKGKE 955
Query: 983 ISLDDSEDVTKLDTPESHVN-AGIRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGTSS 1041
+S +SE+ + E+HVN RRLVLKLP RD +K ++++ + ++G+SS
Sbjct: 956 VSYYESENTKSHELTETHVNLMNKRRLVLKLPNRDISK------STNEFDYQTELVGSSS 1009
Query: 1042 EAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWG 1101
++ QEAT+ NGN S + S + +E + + D++ D+++L GKIRWG
Sbjct: 1010 KSSQEATDFNGNGPSSKDSGYYSGSTSYPTVETTDQAKLDQVTDHVDLL-----GKIRWG 1064
Query: 1102 GVRARSSKRLKIGEMMPLDANNGSGI---HLDDDKEKESEVNGHVKPEKDGIDISCGEEI 1158
VRARSSK L++GE MP D N SG HLD EKE+ +GH K +K+ ++ EI
Sbjct: 1065 MVRARSSKPLRVGEAMPSDTNPYSGKCPNHLD---EKENVGSGHEKEDKNFSALTPELEI 1121
Query: 1159 TNCGDNTDEVPLKNVKNLSGENNDVYSG------DASCKEQQSGFSELNYYDES------ 1206
D+ L ++ ++ E +V SG +AS + + +Y +S
Sbjct: 1122 -----QKDDHKLDSLTEINYEKENVSSGHEKEDKNASALTPELEIQKDDYKVDSLTEINE 1176
Query: 1207 KCVNTTDEDTTP-------------------------YPNHLQNGTIQPSELKEI----L 1237
C TT + P P + +I SE+ ++ +
Sbjct: 1177 NCAGTTSQPFNPTEDGREITASSNCRDKDESLISAYVIPQDIVPASISYSEVDQLPELNI 1236
Query: 1238 TPVSTKLRIRSKRILRDADVEN---------QNNGCDALHGSSLDIKPNSLPEVLESDGT 1288
S ++RSKR RD + + +N+ C ++ + N V++
Sbjct: 1237 GFPSVLTKLRSKRGSRDPESPSKHETKSSVLKNSACSTNDKNNFN---NEQHVVVDDHNN 1293
Query: 1289 NRTSSDRGADGSQRLNAQI--DSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRSK 1346
R +S++G +GSQ ++ QI +STS+ P HS KM+ VYRRS+
Sbjct: 1294 TRVASNQGENGSQEVDPQIRQNSTSQDLP-------------EPHSQRDKMYKAVYRRSR 1340
Query: 1347 TNRDRTNSEGDGGGVGESTLNANNNNFHESA------TDGSRRTRSMGLKTTTCDPDNVS 1400
++R TN D G GE N N+NF+ +A + S+ L+ TTCDP+
Sbjct: 1341 SHRAVTNL-ADSSGQGEFNSNGRNSNFNATANFSNGTNEAIHTNGSLELEPTTCDPNYER 1399
Query: 1401 SNLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTSYLFCDSSPI 1460
+NL++ Q + S N STS QL EE GS+SK+TVGLRS RNRR+SY C++SP+
Sbjct: 1400 NNLKVLQGPGNCMVKSPQNVSTSGGQLTEEERGSNSKLTVGLRSNRNRRSSYNICETSPV 1459
Query: 1461 DRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSREVGPWITVK 1520
++RK+ QS +GSWL+LSTHEEG RYIPQ GDEV YLRQGHQEYI+Y RE GPW+++K
Sbjct: 1460 NKRKSLQSATRGSWLLLSTHEEGCRYIPQQGDEVAYLRQGHQEYIDYCRKRESGPWVSLK 1519
Query: 1521 GNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLV 1580
G+IRAVE+C+V+SLEY+ GSGDSCCKM L+F+DP SSV +F+LTLPEVT FPDFLV
Sbjct: 1520 GHIRAVEYCRVQSLEYSHLPGSGDSCCKMNLQFVDPNSSVVGKSFKLTLPEVTSFPDFLV 1579
Query: 1581 ERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQY 1640
ERTRFDAA+QRNWT RDKC+VWWKNE G+WWDGR+L +K KSSEFPDSPWE YTV+Y
Sbjct: 1580 ERTRFDAAMQRNWTRRDKCRVWWKNEDSSSGNWWDGRILCMKAKSSEFPDSPWESYTVRY 1639
Query: 1641 KTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQ 1700
K++ TETHLHSPWELFD+DT+WEQP IDDD RNKL S KL+QS N VQD+YGV +LK+
Sbjct: 1640 KSDLTETHLHSPWELFDADTEWEQPHIDDDMRNKLQSTLTKLQQSGNPVQDRYGVHELKK 1699
Query: 1701 VSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKI 1760
+S K+ F NRFPVP+S+++IQSRLENNYYR LEA+KHD++++LSNA ++ ++ LS KI
Sbjct: 1700 ISNKSKFINRFPVPISIELIQSRLENNYYRSLEALKHDVSILLSNATTFLEKDAALSAKI 1759
Query: 1761 KRLSDLVTRTLSSL 1774
KRLS+ TR LSSL
Sbjct: 1760 KRLSEWFTRALSSL 1773
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356532519|ref|XP_003534819.1| PREDICTED: uncharacterized protein LOC100819598 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2157 bits (5588), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1153/1813 (63%), Positives = 1362/1813 (75%), Gaps = 102/1813 (5%)
Query: 28 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAE-LDVDVDLREVYFLIMHF 86
MAL+KY PS +APS +K LSFSSKV + A+L D + P +DVD+DLRE+YFLIMHF
Sbjct: 1 MALQKYAPSGNAPSVNIKHLSFSSKVPKKAEL---DEANPNHNMDVDIDLREIYFLIMHF 57
Query: 87 LSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYP 146
LS GPCH+TY QFWNELLEHQLLPRRYHAWYSR+G SGD++DDG+SFPL+YN LVERY
Sbjct: 58 LSAGPCHKTYIQFWNELLEHQLLPRRYHAWYSRTGACSGDKDDDGLSFPLNYNMLVERYS 117
Query: 147 HIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEID 206
HIEKDHLVKLLKQL++NT+SPS M G+APNAADVPTLLG GSFSLLSYDRDK E+
Sbjct: 118 HIEKDHLVKLLKQLLLNTASPSLGMNLGNAPNAADVPTLLGSGSFSLLSYDRDK-MKEVK 176
Query: 207 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 266
PP HMRWPHM A+QV GL LREIGGGF RHHRAPSIRAACYA+AKPSTMVQKMQNIKR+
Sbjct: 177 RPPPHMRWPHMKANQVHGLSLREIGGGFPRHHRAPSIRAACYALAKPSTMVQKMQNIKRL 236
Query: 267 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 326
RGHRNAVYCAIFDRSGRYV+TGSDDRLVKIWSMETAYCLASCRGH+GDITDLAVSSNNAL
Sbjct: 237 RGHRNAVYCAIFDRSGRYVVTGSDDRLVKIWSMETAYCLASCRGHDGDITDLAVSSNNAL 296
Query: 327 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
VAS+SNDC+IRVWRLPDGLPISVLRGHT AVTAIAFSPR ++YQLLSSSDDGTCRIWDA
Sbjct: 297 VASSSNDCVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRLNALYQLLSSSDDGTCRIWDA 356
Query: 387 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV- 445
RY+Q SPR+Y+PRPSD+V G++ PSSS PQS QIFCCAFNANGTVFVTGSSD LARV
Sbjct: 357 RYTQSSPRLYVPRPSDSVIGKSSGPSSSTVPQSRQIFCCAFNANGTVFVTGSSDNLARVF 416
Query: 446 ---WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 502
WNACK + DD+DQP HEIDVLSGHENDVNYVQFSGCAVASRFS A++ KE++ PKFK
Sbjct: 417 LQVWNACKLSMDDTDQPIHEIDVLSGHENDVNYVQFSGCAVASRFSTAETLKEENIPKFK 476
Query: 503 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 562
NSW HDNIVTCSRDGSAIIWIP+SRRSH K+ RWT+AYHL+VPPPPMPPQP RGGPRQR
Sbjct: 477 NSWLNHDNIVTCSRDGSAIIWIPKSRRSHGKSGRWTRAYHLRVPPPPMPPQPQRGGPRQR 536
Query: 563 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 622
ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA+DGSLVHSLTGHTESTYVLDVHPFNP
Sbjct: 537 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNP 596
Query: 623 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 682
RIAMSAGYDG+TIVWDIWEG+PIR YEISRF+LVDGKFS DG SIILSDDVGQLYIL+TG
Sbjct: 597 RIAMSAGYDGRTIVWDIWEGMPIRTYEISRFKLVDGKFSSDGTSIILSDDVGQLYILSTG 656
Query: 683 QGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQ 742
QGESQKDAKYDQFFLGDYRPL+QDT+GNVLDQETQ+ P+RRNLQD LCDSAMIPYPEPYQ
Sbjct: 657 QGESQKDAKYDQFFLGDYRPLIQDTHGNVLDQETQIVPYRRNLQDLLCDSAMIPYPEPYQ 716
Query: 743 TMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEP 802
+ +QQRRLGALG+EWRPSSL+LAVGPDFSLD Y + PLADLD++ +PLPEFID M+WEP
Sbjct: 717 SEFQQRRLGALGLEWRPSSLRLAVGPDFSLDPDYHMLPLADLDLLTEPLPEFIDAMEWEP 776
Query: 803 ENEVQSDDNDSEYNVAEEY-STEEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKK 861
E EV SDD DSEYNV E + S EKG SS +SGDS CS ++SE + MD +RRSKRKK
Sbjct: 777 EVEVFSDDTDSEYNVTEGFFSKGEKGGSSSNASGDSGCSTDNSEGEDTCMDSIRRSKRKK 836
Query: 862 QKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAA 921
QKAE E+MTSSGRRVKRR LDE +GN FG+ R+RK + QK+SRRKSS SKS RPQRAA
Sbjct: 837 QKAETEVMTSSGRRVKRRNLDERDGNT-FGSSRSRKGKSVQKTSRRKSSKSKSSRPQRAA 895
Query: 922 ARNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKGK 981
ARNA FSKITG TDGE+ D G+ S SES LQ+S I+S+ESG +L NEQ +SKGK
Sbjct: 896 ARNALHLFSKITGTPTDGEE-DSLVGDFSGSESTLQESNIDSDESGGTLQNEQLNYSKGK 954
Query: 982 GISLDDSEDVTKLDTPESHVNAGIRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGTSS 1041
+S +SED + E+HVN+ +RLVLKLP RD +K ++++ ++G+SS
Sbjct: 955 EVSYYESEDTKSHELTETHVNSMNKRLVLKLPNRDISK------STNEFGYQAELVGSSS 1008
Query: 1042 EAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWG 1101
+ QEAT+ NGNR S + S + +E+ + + ++ D+++L GKIRWG
Sbjct: 1009 KTAQEATDFNGNRPSSKDSGYCSGSTSYPAVEKTDQAKLGQVTDHVDLL-----GKIRWG 1063
Query: 1102 GVRARSSKRLKIGEMMPLDANNGSGI---HLDDDKEKESEVNGH-------------VKP 1145
VRARSSK L++GE MP D + SG HLD EKE+ +GH V P
Sbjct: 1064 MVRARSSKPLRVGEAMPSDTDPYSGKCPNHLD---EKENVSSGHEKEDKNFSALTPEVTP 1120
Query: 1146 E----KDGIDISCGEEITNCGDNTDEVPLKNVKNLSGEN----------NDVYSGDA--S 1189
E KD + EI +N K KN S D Y D+
Sbjct: 1121 ELEIHKDDYRVDSLTEINGKKENAISGHEKEDKNFSALTPELTPELEIQKDDYKVDSLTE 1180
Query: 1190 CKEQQSGFSE--LNYYDE-------SKCVNTTDEDTTPY--PNHLQNGTIQPSELKEILT 1238
E +G + N ++ S C + + + Y P + +I SE+ ++
Sbjct: 1181 INENCAGTTSQPFNLTEDGGEITASSNCRDKNESLISAYVIPQDIVTASIGYSEVDQLPE 1240
Query: 1239 P------VSTKLRIRSKRILRDADVENQ-NNGCDALHGSSLDIKPN-SLPEVLESDGTN- 1289
P VSTKLR SKR RD + ++ L S+ N +L V+ D N
Sbjct: 1241 PNIGFACVSTKLR--SKRGSRDPESPSKLETKSSVLKNSACSTNDNKNLNNVVVDDSNNT 1298
Query: 1290 RTSSDRGADGSQRLNAQI--DSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRSKT 1347
R +S+ G +GSQ ++ QI +STS+ P HSH KM+ VYRRS++
Sbjct: 1299 RVASNHGENGSQEVDPQIRQNSTSQDLP-------------EPHSHRDKMYKAVYRRSRS 1345
Query: 1348 NRDRTNSEGDGGGVGESTLNANNNNFHESAT------DGSRRTRSMGLKTTTCDPDNVSS 1401
+R TN D G GES N N+NF+ +A + S+ L+ T+ DP+ +
Sbjct: 1346 HRAVTNL-ADSSGQGESNSNGRNSNFNAAANFSNGTYEAIHTNGSLELEPTSSDPNYERN 1404
Query: 1402 NLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTSYLFCDSSPID 1461
NL++ Q + S N STS QL EE S+SK+TVGLRSTRNRR+SY ++SP++
Sbjct: 1405 NLKVLQGPGNCIVKSPQNVSTSGGQLTEEERCSNSKLTVGLRSTRNRRSSYNIRETSPVN 1464
Query: 1462 RRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSREVGPWITVKG 1521
+RK+ QS +GSWL+LSTHEEG RYIPQ GDEVVYLRQGHQEYINY RE GPW+++KG
Sbjct: 1465 KRKSLQSATRGSWLLLSTHEEGCRYIPQQGDEVVYLRQGHQEYINYCRKRESGPWVSLKG 1524
Query: 1522 NIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLVE 1581
+IRAVE+C+V+SLEY+ GSGDSCCKM L F+DP SSV +F+LTLPEVT FPDFLVE
Sbjct: 1525 HIRAVEYCRVQSLEYSHLPGSGDSCCKMNLLFVDPNSSVVGKSFKLTLPEVTSFPDFLVE 1584
Query: 1582 RTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYK 1641
R RFD A+QRNWT RDKC+VWWKNE + G+WWDGR+L VK KSSEFPDSPWE TV+YK
Sbjct: 1585 RIRFDTAMQRNWTRRDKCRVWWKNEDNSSGNWWDGRILCVKAKSSEFPDSPWESCTVRYK 1644
Query: 1642 TEPTETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQV 1701
++ TETHLHSPWELFD+DT+WEQP IDDD RNKL SA KL+QS N VQD+YGV +LK++
Sbjct: 1645 SDLTETHLHSPWELFDADTEWEQPHIDDDMRNKLQSALTKLQQSGNTVQDRYGVHELKKI 1704
Query: 1702 SQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIK 1761
S K+ F NRFPVP+S+++IQSRLENNYYR LEA+KHD+ ++LSNA ++ ++ LS KIK
Sbjct: 1705 SNKSKFINRFPVPISIELIQSRLENNYYRSLEALKHDVTILLSNATTFLEKDAVLSAKIK 1764
Query: 1762 RLSDLVTRTLSSL 1774
RLS+ TRTLSSL
Sbjct: 1765 RLSEWFTRTLSSL 1777
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437555|ref|XP_002270469.1| PREDICTED: uncharacterized protein LOC100248563 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2036 bits (5275), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1116/1809 (61%), Positives = 1320/1809 (72%), Gaps = 105/1809 (5%)
Query: 28 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 87
M +K S++APS +M PLSFS+K+HE Q +T DVD+DLREVYFLIMHFL
Sbjct: 1 MDFQKCKSSSEAPSLSMVPLSFSNKLHERPQCQERNTDHVVA-DVDIDLREVYFLIMHFL 59
Query: 88 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 147
S GPC +T+GQFWNELLEH+LLPRRYHAWYSRSG SGDEND+G SFPL YN LVERYPH
Sbjct: 60 SAGPCQKTFGQFWNELLEHELLPRRYHAWYSRSGACSGDENDNGFSFPLGYNNLVERYPH 119
Query: 148 IEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDH 207
I KDHLVKLLKQL++NT+ P +GG+AP+A DVPTLLG GSFSLL + K ++
Sbjct: 120 IGKDHLVKLLKQLMLNTAPPLHGEVGGNAPSAVDVPTLLGTGSFSLLDCHKKKENKQVKP 179
Query: 208 PPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR 267
PP ++RWPHM ADQVRGL LREIGGGFT+HHRAPSIR+ACYAIAKPSTMVQ+MQN+K++R
Sbjct: 180 PPDYLRWPHMQADQVRGLSLREIGGGFTKHHRAPSIRSACYAIAKPSTMVQRMQNMKKLR 239
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 327
GHR+AVYCAIFDRSGRYVITGSDDRLVKIWSMETA+CLASCRGHEGDITDLAVSSNN LV
Sbjct: 240 GHRDAVYCAIFDRSGRYVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNVLV 299
Query: 328 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
ASASND IIRVWRLPDGLPISVLRGHT AVTAIAFSPRP SVYQLLSSSDDG+CRIWDAR
Sbjct: 300 ASASNDFIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSSVYQLLSSSDDGSCRIWDAR 359
Query: 388 YSQFSPRIYIPRPSDAVAGRNMAPS-----SSAGPQSHQIFCCAFNANGTVFVTGSSDTL 442
+SQ SPRIY+P+P DAVAG+N PS SS GPQSHQI CCAFNA+GTVFVTGSSDT
Sbjct: 360 FSQCSPRIYLPKPPDAVAGKNSVPSMNGTSSSNGPQSHQILCCAFNASGTVFVTGSSDTF 419
Query: 443 ARV---WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 499
ARV W+ACK +TDDS+QPNHEIDVLSGHENDVNYVQFS CA ASR S++D+ KE+S P
Sbjct: 420 ARVHQVWSACKSSTDDSEQPNHEIDVLSGHENDVNYVQFSACAGASRSSVSDTFKEESLP 479
Query: 500 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 559
KFKNSWFCHDNIVTCSRDGSAIIWIPRSRR H K RWT+AYHLKVPPPPMPPQPPRGGP
Sbjct: 480 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRYHGKVGRWTRAYHLKVPPPPMPPQPPRGGP 539
Query: 560 RQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 619
RQR+LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH+ STYVLDVHP
Sbjct: 540 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHSASTYVLDVHP 599
Query: 620 FNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYIL 679
FNPRIAMSAGYDGKTIVWDIWEGIPIR YEI RF+LVDGKFSPDG SI+LSDDVGQ+Y+L
Sbjct: 600 FNPRIAMSAGYDGKTIVWDIWEGIPIRTYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLL 659
Query: 680 NTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPE 739
NTGQGESQKDAKYDQFFLGDYRPL++DT GNVLDQETQLAPHRRN+QDPLCDS+MIPY E
Sbjct: 660 NTGQGESQKDAKYDQFFLGDYRPLIRDTIGNVLDQETQLAPHRRNIQDPLCDSSMIPYSE 719
Query: 740 PYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMD 799
PYQTMYQQRRLGALGIEW PSS+ LAVGPDFSL Q YQ+ PLADLD +++PLPE +D +
Sbjct: 720 PYQTMYQQRRLGALGIEWHPSSINLAVGPDFSLGQEYQMPPLADLDRVMEPLPELVDAVY 779
Query: 800 WEPENEVQSDDNDSEYNVAEEYSTE-EKGSLSSTSS-GDSECSAEDSEDGENPMDGLRRS 857
WEPENEV SDD DSEYN+AEEYS+E E GSLS+ SS D ECSAED++ + DGLRRS
Sbjct: 780 WEPENEVISDDTDSEYNIAEEYSSEGEHGSLSAASSFSDPECSAEDTDVEHSHKDGLRRS 839
Query: 858 KRKKQKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRP 917
+RKK ++EVEIMTSSGRRVKRR L+E +G ++ RT+KS N +K S+R SS +SLRP
Sbjct: 840 RRKKYRSEVEIMTSSGRRVKRRNLNECDGTSS--RSRTKKSKNGRKVSKRNSSKIQSLRP 897
Query: 918 QRAAARNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKH 977
QRAA RNA + FS+IT ST+G+D +G E + S S+ +QDS +++ +S R+L N Q+K+
Sbjct: 898 QRAAKRNALNMFSQITETSTEGDDEEGLEDDSSGSDPMIQDSNMQNTKSDRNLQNVQQKY 957
Query: 978 SKGKGISLDDSEDVTKLDTPESHVNAG-IRRLVLKLPVRDSNKHELQERTSDKCNQLVSV 1036
+G+ SL++ E+ K PES NAG RRLVLK +RDS K E T KCN +
Sbjct: 958 QRGEQSSLNEFENAIKF--PESQSNAGNRRRLVLKFSLRDSKKSIPSEDTRPKCNTQADI 1015
Query: 1037 IGTSSE-AHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQF------DKLEDYLNL 1089
+ + S + E N +S + S A+ + R F ++ ED+L+
Sbjct: 1016 VHSPSRPPPKTVEEKETNLISEDPESSSMHAADLEQSQNHNRDDFIHKPRSEETEDHLDT 1075
Query: 1090 SNGYKDGKIRWGGVRARSSKRLKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDG 1149
S GYKD KIRWG V+ARSSKR + G+ + DA G + D ++NG KPE +G
Sbjct: 1076 SAGYKDNKIRWGEVKARSSKRFRSGDFVASDACTGFDVSFDVHNGNGKDINGQTKPE-NG 1134
Query: 1150 IDISCGEEITNCGDNTDEVPLKNVKNLSG--------ENNDVY-SGDASCKEQQSGFSEL 1200
S EI N E ++V+ +NN++ G+A+ G S L
Sbjct: 1135 CGNSSPSEIQNHAGELLEKLGRDVEPFGTGLENKDDVKNNELAPPGEANKSSSFQGLSLL 1194
Query: 1201 NYY------------------------DESKCVNTTDEDTTPYPNHLQNGTIQPSELKEI 1236
+ + DE + ++ + D T NH +LK
Sbjct: 1195 DDHQKIDASAISSNGNLNKQHKGWSGSDEFRDCDSLEMDETVGINHSH-------DLKGN 1247
Query: 1237 LTPVSTKLRIRSKRILRDADVENQNNGCDALHGSSLDIKPNSLPEVLESDGTNRTSSDRG 1296
S KLRIRSKRI+RD + P+ L V ++ + D
Sbjct: 1248 PPANSLKLRIRSKRIVRDPNF------------------PSKLKFVTGTEEPSNIGGDLM 1289
Query: 1297 ADGSQRL-NAQIDSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRSKTNRDRTNSE 1355
+ R+ + QI E D + S P SHS S ++ ++ V++R+K+ RTN+E
Sbjct: 1290 SRSHSRMEHNQISEVPEEDKVIEMPSS--PHRSHSDS-DKQNYDAVHKRAKSYMARTNAE 1346
Query: 1356 GDGGGVGESTLNANNNN------FHESATDGSRRTRSMGLKTTTCDPDNVSSNLRL-EQH 1408
G GG + ES NA N N FHE+ TD RTRSM TT+ +P+NV S ++ E+
Sbjct: 1347 GYGGSMEESASNAGNYNYDSGIDFHEATTDAVHRTRSMVRDTTSQEPNNVMSRFKVREET 1406
Query: 1409 NQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTSYLFCDS--SPIDRRKTH 1466
++ + YS +R QL EEW SSS+M V RSTR RR Y D+ SP R ++
Sbjct: 1407 SKNAENYS----KKTRDQLQSEEWMSSSRMRVRSRSTRYRRGDY---DNYLSPSAGRISN 1459
Query: 1467 QSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSR-EVGPWITVKGNIRA 1525
S RK SWLMLS HEEG RYIPQ GDEVVYLRQGHQEYI R EVGPW + K NIRA
Sbjct: 1460 FSGRKVSWLMLSEHEEGYRYIPQQGDEVVYLRQGHQEYIEKLNLRSEVGPWRSPKTNIRA 1519
Query: 1526 VEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLVERTRF 1585
VE C VE L YA+ +GSGDSCCK+TLKF DP SSV TF+LTLPE+ F DF+VE+TR+
Sbjct: 1520 VEICSVEDLVYASLAGSGDSCCKITLKFTDPLSSVFGRTFKLTLPELINFSDFVVEKTRY 1579
Query: 1586 DAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPT 1645
DAAI RNWT RDKC VWW+N D GSWW+GR+L+V+ KS EFPDSPWERY V+YK +
Sbjct: 1580 DAAIGRNWTHRDKCLVWWRNGEDGGGSWWEGRILAVEAKSREFPDSPWERYVVKYKGD-A 1638
Query: 1646 ETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKT 1705
E +LHSPWEL D D QWEQP+ID + R+KLLS+FAKLE SA+++QD YG+QK QV+QK
Sbjct: 1639 ENNLHSPWELHDPDIQWEQPQIDFEIRDKLLSSFAKLE-SAHKIQDYYGIQKFNQVAQKL 1697
Query: 1706 NFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSD 1765
+F NRFPVPL ++IQ+RLENNYYR LEAVKHDI VMLSNA+SYFGRN +LS+K+KRLSD
Sbjct: 1698 DFLNRFPVPLYPELIQARLENNYYRTLEAVKHDIMVMLSNAQSYFGRNAELSSKMKRLSD 1757
Query: 1766 LVTRTLSSL 1774
TRTLS L
Sbjct: 1758 WFTRTLSKL 1766
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433431|ref|XP_004134501.1| PREDICTED: uncharacterized protein LOC101214610 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2026 bits (5250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1081/1780 (60%), Positives = 1310/1780 (73%), Gaps = 84/1780 (4%)
Query: 28 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 87
MALRK++ PS +K SF K+HE Q +T++ E DV++D REVYFLIMHFL
Sbjct: 1 MALRKFV-CGSTPSINLKHSSFPIKLHEQTQFEEPETNRTLEPDVEIDPREVYFLIMHFL 59
Query: 88 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 147
S+GPC RT G W+EL EHQLLPRRYHAWYSR+G+ SG ENDDG+SFPLSY LVERYPH
Sbjct: 60 SSGPCLRTCGLLWDELFEHQLLPRRYHAWYSRNGVHSGHENDDGLSFPLSYQHLVERYPH 119
Query: 148 IEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDH 207
++K+HL+KLLKQLI+N + PSR M GG APNAADVPTLLG G+FSLLSYD+ +G ++
Sbjct: 120 VDKNHLIKLLKQLILNKAPPSRGMSGGIAPNAADVPTLLGTGTFSLLSYDKHEGVSKPSG 179
Query: 208 PPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR 267
PPAHMRWPHM AD VRGL LREIGGGF+RH RAPS+RAACYAIAKPSTMVQKMQNIKR+R
Sbjct: 180 PPAHMRWPHMKADSVRGLSLREIGGGFSRHQRAPSVRAACYAIAKPSTMVQKMQNIKRLR 239
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 327
GHRNAVYCAIFDR+GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA+V
Sbjct: 240 GHRNAVYCAIFDRAGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAVV 299
Query: 328 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
AS+SND +IRVWRLPDGLPISVLRGHT AVTAIAFSPR + YQLLSSSDDGTCRIWDAR
Sbjct: 300 ASSSNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPR--AAYQLLSSSDDGTCRIWDAR 357
Query: 388 YS-QFSPRIYIPRPSDAVAG----RNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 442
S Q +PRIY+P+P D+V G RN S S PQSHQIFCCAFNA GT+FVTGSSDTL
Sbjct: 358 SSSQSAPRIYVPKPLDSVTGWLISRNGGSSVSTLPQSHQIFCCAFNACGTIFVTGSSDTL 417
Query: 443 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 502
ARVW+ACK N D+ DQPNHEIDVL+GHENDVNYVQFSGCAVASRF+ D +KED+ KFK
Sbjct: 418 ARVWSACKGNNDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRFTTTDVAKEDNVHKFK 477
Query: 503 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 562
NSWF +DNIVTCSRDGSAIIW+PRSRRSH K RWT+AYHLKVPPPPMPPQP RGGPRQR
Sbjct: 478 NSWFTYDNIVTCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPARGGPRQR 537
Query: 563 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 622
ILPTPRGVNMI+WSLDNRFVLAAIMDCRICVWNA+DGSLVHSLTGHTESTYVLDVHPFNP
Sbjct: 538 ILPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNP 597
Query: 623 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 682
RIAMSAGYDGKTIVWDIWEG PIRIYEIS F+LVDGKFS DG SIILSDDVGQLYIL+TG
Sbjct: 598 RIAMSAGYDGKTIVWDIWEGTPIRIYEISHFKLVDGKFSSDGTSIILSDDVGQLYILSTG 657
Query: 683 QGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQ 742
QGESQ+DAKYDQFFLGDYRPL+QD GNV+DQETQL+ +RRNLQD L DS MIPYPEPYQ
Sbjct: 658 QGESQQDAKYDQFFLGDYRPLIQDPSGNVIDQETQLSTYRRNLQDLLSDSGMIPYPEPYQ 717
Query: 743 TMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEP 802
T YQQRRLGA+ +EWRPSSLKL+VGPDF+LD YQL PLADLD++++PLP+ +D MDW P
Sbjct: 718 TAYQQRRLGAMSVEWRPSSLKLSVGPDFNLDPDYQLLPLADLDMLVEPLPDIVDAMDWGP 777
Query: 803 ENEVQSDDNDSEYNVAEEYST-EEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKK 861
ENEVQS+D DSEYNV E+YST E+ SL+S S D ECS+ED+ + P DGLRRSKRKK
Sbjct: 778 ENEVQSEDTDSEYNVTEDYSTGGEQRSLNSNCSTDPECSSEDTGIDDAPADGLRRSKRKK 837
Query: 862 QKAEVEIMTSSGRRVKRRILDESEGNAAFGNK-RTRKSGNRQKSSRRKSSTSKSLRPQRA 920
QKA++E+MTSSGRRVKRR +DE EG+A ++ R KSG++ S SKSLRPQRA
Sbjct: 838 QKADMEVMTSSGRRVKRRNMDEYEGDAIRSSRNRKSKSGHKPSKK---KSASKSLRPQRA 894
Query: 921 AARNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKG 980
AARNAR++ S G STDGE+ S G+ SESES L+DS IES+E RSL N + KHSKG
Sbjct: 895 AARNARNWISSFKGKSTDGEEEYESGGDCSESESTLEDSDIESDEYERSLQN-RIKHSKG 953
Query: 981 KGISLDDSEDVTK-LDTPESHVNAGIR-RLVLKLPVRDSNKHELQERTSDKCNQLVSVIG 1038
K + L +E++TK LD PES V+AG R +L++K V++ NK + T+ C+ V
Sbjct: 954 KEVFLYGAEEITKSLDVPESRVDAGNRKKLIVKFSVKNLNKGDPPLSTALSCSNTADVAS 1013
Query: 1039 TSSEAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKI 1098
+SS + +E E + N V R QF ++ +L+ Y +G I
Sbjct: 1014 SSSRSPKEVIETSQNLV-------------------RSERQFVNIDGNSDLTEVYTNGNI 1054
Query: 1099 RWGGVRARSSKRLKIGEMMPLDANN-GSGIHLDDDKEKESEVNGHVKPEKDGIDISCGEE 1157
RWGG R RSSKR++ G+ MP DA S + D E E+ V+ +++ E S +
Sbjct: 1055 RWGGSRVRSSKRIRFGDTMPSDAYAVSSSLPNGDHNENENAVHEYLERENHFGAPSPHAK 1114
Query: 1158 ITN-CGDNTDEVPLKNVK----NLSGENND-VYSGDASCKEQQSGFSELNYYDESKCVNT 1211
+ N C D D V +K N SG + + V G+ C G S+ +D+S +
Sbjct: 1115 VVNFCSDEMDTVSPTKLKEEDDNASGHSQEMVNGGELKC----VGNSKSCDHDDSNNLIM 1170
Query: 1212 TDEDTTPYPNHLQNGTIQPSELKEILTPVSTKLRIRS---------KRILRDADVENQNN 1262
D T +QNGT P E E P+ K+R +S K + D ++N+
Sbjct: 1171 FSSDAT--TTSIQNGTHAP-EQTENTAPMRKKIRFKSISLDPEHSLKHKIESLDESSKND 1227
Query: 1263 GCDALHGSSLDIKPNSLPEVLESDGTNRTSSDRGADGSQRLNAQIDSTSEHDPLGSHSHS 1322
+ + GS PN L + + TN T SD + + ++ +D P+ + +S
Sbjct: 1228 EYNTVSGSPQ--HPNGLKDSV----TNETYSDLRNNCPEDMDIAVD----EKPVSTLCNS 1277
Query: 1323 HDPLGSHSHSHSRKMFNVVYRRSKTNRDRTNSEGDGGGVGESTL-NANNNNFHESATDGS 1381
+ ++ KM+ VY RSK+N+ ++N + +G GE L N++ +S
Sbjct: 1278 SELQAVETN----KMYTAVYTRSKSNKGKSNIDSNGCASGEHALGNSSLPADADSHKIML 1333
Query: 1382 RRTRSMGLKTTTCDPDNVSSNLRLEQHNQPEDM--YSGHNRSTSRCQLPHEEWGSSSKMT 1439
R+ RS+ K ++ D +NV +L+ ++ + E SG N S R +P EEWGSSS+MT
Sbjct: 1334 RKARSIRFKESSYDLNNVGDDLKSDEDQELEQKSRRSG-NSSADRSHIPSEEWGSSSRMT 1392
Query: 1440 VGLRSTRNRRTSYLFCDSSPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQ 1499
VG RSTRNRR + L D +P+DRRK+ Q RKGSWLM+ HE GSRYIPQLGDEV YLRQ
Sbjct: 1393 VGSRSTRNRRGT-LIQDINPVDRRKSVQYARKGSWLMMPAHEGGSRYIPQLGDEVAYLRQ 1451
Query: 1500 GHQEYI-----NYSGSREVGPWITVKGNIRAVEFCKVESLEYATASGSGDSCCKMTLKFI 1554
GHQEYI NY +++GPW + +G IRAVEFCKV L Y+T++GSGDSCCKM LKFI
Sbjct: 1452 GHQEYIQHCCANYCHIKDMGPWTSNRGTIRAVEFCKVVELVYSTSAGSGDSCCKMLLKFI 1511
Query: 1555 DPTSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWW 1614
DP+S V +F+LTLPE+T FPDFLVE++RF+AA+QRNWT RDKCKVWWKN+ DGSWW
Sbjct: 1512 DPSSQVYLQSFKLTLPELTSFPDFLVEKSRFEAAMQRNWTFRDKCKVWWKNDVGVDGSWW 1571
Query: 1615 DGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNK 1674
DGR++SV+ KSSEFP+SPWERYT++Y+++P E HLHSPWEL+D+ QWEQPRIDD+ ++K
Sbjct: 1572 DGRIISVQAKSSEFPESPWERYTIRYRSDPAEPHLHSPWELYDTIIQWEQPRIDDETKSK 1631
Query: 1675 LLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEA 1734
LL A KL + +Q ++G+Q L +S+KT + NRFPVPL L++IQ RL+N+YYR LEA
Sbjct: 1632 LLMAIDKLMSPS--MQGRFGIQDLMILSRKTQYKNRFPVPLCLEIIQERLQNDYYRSLEA 1689
Query: 1735 VKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1774
+KHD VMLSN ES+ +N D+S KI+RLSD R +S L
Sbjct: 1690 LKHDFMVMLSNFESFVAKNEDMSKKIRRLSDWFDRNISPL 1729
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42568419|ref|NP_199754.2| WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein [Arabidopsis thaliana] gi|332008427|gb|AED95810.1| WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1871 bits (4847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1053/1777 (59%), Positives = 1271/1777 (71%), Gaps = 132/1777 (7%)
Query: 28 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 87
MALRK P D+ S MKPL+FS K+ N Q+ D Q ++D+DLREVYFL++H L
Sbjct: 1 MALRKNTPKGDSVSLPMKPLNFSRKLPGNVQIPDPDIVQSVAPNIDLDLREVYFLMLHLL 60
Query: 88 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 147
S+GPC +TY +ELLEH+LLPRRYHAWYSRSGLPSGDENDDG SFPL+Y +L +RY H
Sbjct: 61 SSGPCQKTYALLRHELLEHELLPRRYHAWYSRSGLPSGDENDDGNSFPLNYTELAKRYSH 120
Query: 148 IEKDHLVKLLKQLII--NTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEI 205
++KDHLV+LLKQL+ N +PSR + G+ A VPTLLG GSFSLLS D++ +++
Sbjct: 121 VKKDHLVELLKQLVFVSNRPNPSRGIGDGNKMIGAGVPTLLGTGSFSLLSSDKEIVGSDL 180
Query: 206 DHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKR 265
PP MRWPHM+ADQVRG+ LREIGGGF RHHRAPSIRAACY IAKPS+MVQKMQNIKR
Sbjct: 181 KPPPIGMRWPHMHADQVRGISLREIGGGFARHHRAPSIRAACYVIAKPSSMVQKMQNIKR 240
Query: 266 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA 325
+RGHRNAVYCAI DRSGRYVITGSDDRLVK+WSM+TAYCLASCRGHEGDITDLAVSSNN
Sbjct: 241 LRGHRNAVYCAILDRSGRYVITGSDDRLVKVWSMDTAYCLASCRGHEGDITDLAVSSNNI 300
Query: 326 LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 385
+ASASNDC+IRVWRLPDGLP+SVLRGHT AVTAIAFSPRPGS YQLLSSSDDGTCRIWD
Sbjct: 301 FIASASNDCVIRVWRLPDGLPVSVLRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIWD 360
Query: 386 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 445
AR +QF+PRIY+PRP + G+N PSSS QSHQIFCCAFNA+G+VFVTGSSDTLARV
Sbjct: 361 ARGAQFAPRIYVPRPP-SPDGKNSGPSSSNAQQSHQIFCCAFNASGSVFVTGSSDTLARV 419
Query: 446 ---WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 502
W+A K NTDD +QPNHE+DVL+GHENDVNYVQFSGCA S+FS+ D SK+++ PKFK
Sbjct: 420 YSVWSANKTNTDDPEQPNHEMDVLAGHENDVNYVQFSGCAAGSKFSVTDYSKDENVPKFK 479
Query: 503 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 562
NSWFCHDNIVTCSRDGSAIIWIPR RRSH K+ RWT+AYHLKVPPPPMPPQPPRGGPRQR
Sbjct: 480 NSWFCHDNIVTCSRDGSAIIWIPRLRRSHGKSCRWTRAYHLKVPPPPMPPQPPRGGPRQR 539
Query: 563 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 622
ILPTPRGVNMI WSLDNRFVLAAIMDCRICVWNA+DGSLVHSLTGHT STYV+DVHPFNP
Sbjct: 540 ILPTPRGVNMIAWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTASTYVMDVHPFNP 599
Query: 623 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 682
RIAMSAGYDGKTIVWDIWEGIPI+IY+IS ++LVDGKFSPDG SIILSDDVGQLYIL+TG
Sbjct: 600 RIAMSAGYDGKTIVWDIWEGIPIQIYDISHYKLVDGKFSPDGTSIILSDDVGQLYILSTG 659
Query: 683 QGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQ 742
QG+SQKDAKYDQFFLGDYRPL+QDTYGNVLDQE+QL P+RRN++DPLCDS MIPY EPYQ
Sbjct: 660 QGDSQKDAKYDQFFLGDYRPLIQDTYGNVLDQESQLQPYRRNMEDPLCDSGMIPYEEPYQ 719
Query: 743 TMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEP 802
T +Q+RRLGALG EWRPSSLKLAVGPD +LD+ YQ+ PLADLD + +PLPEFIDVM+WEP
Sbjct: 720 TTFQKRRLGALGKEWRPSSLKLAVGPDITLDRDYQMPPLADLD-LAEPLPEFIDVMEWEP 778
Query: 803 ENEVQSDDNDSEYNVAEEYST-EEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKK 861
E ++ SD+NDSEYNV EEYS+ +E+ L+S++SG+S S+ +S + ++ + LRRSKRKK
Sbjct: 779 EVDILSDENDSEYNVPEEYSSGKEQECLNSSTSGESGSSSGESYEDDDHQNSLRRSKRKK 838
Query: 862 QKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAA 921
K E IMTSSGRRVK+R DE EG A KRTRKS + +K S+RKSS SKS RP+RAA
Sbjct: 839 HKKEAGIMTSSGRRVKKRNFDELEG-APSNKKRTRKSRSGRKESKRKSSKSKSSRPRRAA 897
Query: 922 ARNARSFFSKITGASTDGEDVDGSEGELSESESD-LQDSYIESEESGRSLLNEQRKHSKG 980
ARNA S+FSKITG S D E+ + SE S QDS E +LLN K SKG
Sbjct: 898 ARNALSWFSKITGTSKDAEEEEVSELSDSSESESTTQDSGTGDSELEVALLNGHGKQSKG 957
Query: 981 KGISLDDSED-VTKLDTPESHVNAGIRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGT 1039
K I + DS+D + D E+H A RRLVL+ PVR+S+K L E ++ G+
Sbjct: 958 KTILVCDSDDGAQQCDIRETHT-AERRRLVLRFPVRNSDKLTLLE----------NLPGS 1006
Query: 1040 SSEAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIR 1099
S + T GNG C R QF+ G K++
Sbjct: 1007 SCDV-PSPTLGNG----------------CTEDSRIPGNQFE----------GLDVSKVK 1039
Query: 1100 WGGVRARSSKRLKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDI-SCGEEI 1158
WG V+AR++KR++ GE + GS D + KE+ V +G+ SC E
Sbjct: 1040 WGMVKARTTKRIR-GEAISSHELMGS-----DPEGKENNVKEDSNHRGNGVTAPSCLELK 1093
Query: 1159 TNCGD---NTDEVPLKNVKNLSGENNDVYSGDASCKEQQSGFSELNYYDESKCVNTTDED 1215
T+ D +TD V + N G+ G S D+
Sbjct: 1094 TDIDDMAVDTDTVISNGLPN-GGKRYPELDGSPS--------------------RVADDK 1132
Query: 1216 TTPYPNHLQNGTIQPSELKEILTPVSTKLRIRSKRILRDAD-----------VENQNNGC 1264
+ N QN T + +L + L P+ST L+IRSKR+ R D ++ + G
Sbjct: 1133 AS---NSSQNVTHR-HDLIDSLPPISTTLKIRSKRVSRAPDTSLRQEGKSLSIDQETGGS 1188
Query: 1265 DALHGSSLDIKPNSLPEVLESDGTNRTSSDRGADGSQRLNAQI-DSTSEHDPLGSHSHSH 1323
DAL+ D K + L + DG T D LN QI D+ S + +
Sbjct: 1189 DALNDGFEDAKCD-LTLDCQKDGVVGTEISLRNDCVLELNPQICDALSIANDV------- 1240
Query: 1324 DPLGSHSHSHSRKMFNVVYRRSKTNRDRTNSEGDGGGVGE------STLNANNNNFHESA 1377
P+ SHSH ++MF+ VYRR K+ + + N + D E S + + + HE A
Sbjct: 1241 -PV---SHSHPKRMFDFVYRR-KSRKHKNNLDRDAALTKEVSPGSCSQDHGSGSKSHEGA 1295
Query: 1378 TDGSRRTRSMGLKTTTCDPDNVSSNLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSK 1437
++G T GL+ + ++ + + NQ EE S+S
Sbjct: 1296 SNGFHGTELNGLEKSEGSLTHIQDKISDSRGNQNS----------------QEELRSASG 1339
Query: 1438 MTVGLRSTRNRRTSYLFCDSSPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYL 1497
T+ LRSTRNR+++Y F ++ PI+ +K Q + SWL LS HEEGSRYIPQ+GDEV YL
Sbjct: 1340 ATLRLRSTRNRKSTYPFSETKPIETKKPQQLIENVSWLTLSIHEEGSRYIPQMGDEVAYL 1399
Query: 1498 RQGHQEYINYSGSREVGPWITVK-GNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDP 1556
RQGHQEY+N+S REV PW ++K GNI+AVE CKVESLEYAT GSGDSCCKM LK IDP
Sbjct: 1400 RQGHQEYLNFSSLREVAPWTSIKGGNIKAVEICKVESLEYATLPGSGDSCCKMILKVIDP 1459
Query: 1557 TSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDG 1616
S V N F+LTLPEV FPDFLVER+R++AAIQRNWTCRDKCKVWW++E +EDGSWW+G
Sbjct: 1460 NSEVFNKAFKLTLPEVVTFPDFLVERSRYEAAIQRNWTCRDKCKVWWRDEGEEDGSWWEG 1519
Query: 1617 RVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNKLL 1676
R+L+VKPKS +FPDSPWERYTV+YK++P ETHLHSPWELFD+DT+WEQP IDD+ RN+LL
Sbjct: 1520 RILAVKPKSPDFPDSPWERYTVKYKSDPAETHLHSPWELFDADTKWEQPHIDDEQRNRLL 1579
Query: 1677 SAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVK 1736
SA KLE S R QD +G++KL Q ++++NRFPVPLSL+VI+SRLENNYYR +EA++
Sbjct: 1580 SALTKLETSDKRTQDSFGLRKLNQTVGNSSYSNRFPVPLSLEVIRSRLENNYYRSVEALR 1639
Query: 1737 HDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1773
HD++VMLSNAE++FGRN ++ KI LS+ RTL S
Sbjct: 1640 HDVSVMLSNAETFFGRNKSVAAKISNLSNWFDRTLPS 1676
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297795697|ref|XP_002865733.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297311568|gb|EFH41992.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1859 bits (4816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1047/1763 (59%), Positives = 1254/1763 (71%), Gaps = 135/1763 (7%)
Query: 44 MKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFLSTGPCHRTYGQFWNEL 103
MKPL+FS K+ N Q+ D +Q ++D+DLREVYFLI+H LS+GPC +TY +EL
Sbjct: 1 MKPLNFSRKLPGNVQIPDPDIAQVVAPNIDLDLREVYFLILHLLSSGPCQKTYALLRHEL 60
Query: 104 LEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPHIEKDHLVKLLKQLII- 162
LEH+LLPRRYHAWYSRSGL SGDENDDG SFPL+Y +L +RY H++KDHLV+LLKQL+
Sbjct: 61 LEHELLPRRYHAWYSRSGLSSGDENDDGNSFPLNYTELAKRYSHVKKDHLVELLKQLVFV 120
Query: 163 -NTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDHPPAHMRWPHMYADQ 221
N +PSR + G+ A VPTLLG GSFSLLS D++ +++ PP MRWPHM+ADQ
Sbjct: 121 SNRPNPSRGIGDGNKMIGAGVPTLLGTGSFSLLSSDKEIVGSDLKAPPIGMRWPHMHADQ 180
Query: 222 VRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRS 281
VRG+ LREIGGGF RHHRAPSIRAACY IAKPS+MVQKMQNIKR+RGHRNAVYCAI DRS
Sbjct: 181 VRGISLREIGGGFGRHHRAPSIRAACYVIAKPSSMVQKMQNIKRLRGHRNAVYCAILDRS 240
Query: 282 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 341
GRYVITGSDDRLVK+WSM+TAYCLASCRGHEGDITDLAVSSNN +ASASNDC+IRVWRL
Sbjct: 241 GRYVITGSDDRLVKVWSMDTAYCLASCRGHEGDITDLAVSSNNIFIASASNDCVIRVWRL 300
Query: 342 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 401
PDGLP+SVLRGHT AVTAIAFSPRPGS YQLLSSSDDGTCRIWDAR +QF+PRIY+PRP
Sbjct: 301 PDGLPVSVLRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIWDARGAQFAPRIYVPRPP 360
Query: 402 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV---WNACKPNTDDSDQ 458
+ G+N PSSS QSHQIFCCAFNANG+VFVTGSSDTLARV W+A K NTDD +Q
Sbjct: 361 -SPDGKNSGPSSSNAQQSHQIFCCAFNANGSVFVTGSSDTLARVYSVWSANKTNTDDPEQ 419
Query: 459 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG 518
PNHE+DVL+GHENDVNYVQFSGCA S+FS+ D SK+++ PKFKNSWFCHDNIVTCSRDG
Sbjct: 420 PNHEMDVLAGHENDVNYVQFSGCAAGSKFSVTDYSKDENVPKFKNSWFCHDNIVTCSRDG 479
Query: 519 SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 578
SAIIWIPRSRRSH K+ RWT+AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMI WSLD
Sbjct: 480 SAIIWIPRSRRSHGKSCRWTRAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIAWSLD 539
Query: 579 NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638
NRFVLAAIMDCRICVWNA+DGSLVHSLTGHT STYV+DVHPFNPRIAMSAGYDGKTIVWD
Sbjct: 540 NRFVLAAIMDCRICVWNASDGSLVHSLTGHTASTYVMDVHPFNPRIAMSAGYDGKTIVWD 599
Query: 639 IWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLG 698
IWEGIPI+IYEIS ++LVDGKFSPDG SIILSDDVGQLYIL+TGQG+SQKDAKYDQFFLG
Sbjct: 600 IWEGIPIQIYEISHYKLVDGKFSPDGTSIILSDDVGQLYILSTGQGDSQKDAKYDQFFLG 659
Query: 699 DYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWR 758
DYRPL+QD YGNVLDQE+QL P+RRN++DPLCDS MIPY EPYQT +Q+RRLGALG EWR
Sbjct: 660 DYRPLIQDIYGNVLDQESQLQPYRRNMEDPLCDSGMIPYEEPYQTTFQKRRLGALGKEWR 719
Query: 759 PSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQSDDNDSEYNVA 818
PSSLKLAVGPD +LDQ YQ+ PLADLD + +PLPEFIDVM+WEPE ++ SD+NDSEYNV
Sbjct: 720 PSSLKLAVGPDITLDQDYQMPPLADLD-LAEPLPEFIDVMEWEPEVDILSDENDSEYNVP 778
Query: 819 EEYST-EEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQKAEVEIMTSSGRRVK 877
EEYS+ +E+ L+S++SG+S S+ +S++ ++ + LRRSKRKK K E IMTSSGRRVK
Sbjct: 779 EEYSSGKEQECLNSSTSGESGSSSGESDEDDDHQNSLRRSKRKKDKKEAGIMTSSGRRVK 838
Query: 878 RRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAARNARSFFSKITGAST 937
+R DE EG A KRTRKS + +K S+RKSS SKS RP+RAAARNA S+FSKITG S
Sbjct: 839 KRNFDELEG-APSNKKRTRKSRSGRKESKRKSSKSKSSRPRRAAARNALSWFSKITGTSK 897
Query: 938 DGEDVDGSEGELSESESD-LQDSYIESEESGRSLLNEQRKHSKGKGISLDDSED-VTKLD 995
D E+ + SE S QDS E +LLN K SKGK I + DS+D + D
Sbjct: 898 DAEEEEVSELSDSSESESTTQDSGTGDSELEVALLNGHGKQSKGKNILVCDSDDGAQQCD 957
Query: 996 TPESHVNAGIRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGTSSEAHQEATEGNGNRV 1055
E+H RRLVL+ PVR+S+K L E ++ G+SS+ T GNG
Sbjct: 958 IRETHPTER-RRLVLRFPVRNSDKLTLLE----------NLPGSSSDV-PTPTLGNG--- 1002
Query: 1056 SYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWGGVRARSSKRLKIGE 1115
C R QF+ G K++WG V+AR++KR++ GE
Sbjct: 1003 -------------CAEDSRIPGNQFE----------GLDVSKVKWGMVKARTTKRIR-GE 1038
Query: 1116 MMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDI-SCGE---EITNCGDNTDEVPLK 1171
+ GS D + KE+ + +G+ SC E +I +TD V
Sbjct: 1039 AISSHELMGS-----DPEGKENNLKEDANHHGNGVTAPSCLELKTDIDGMAVDTDTVISS 1093
Query: 1172 NVKNLSGENNDVYSGDASCKEQQSGFSELNYYDESKCVNTTDEDTTPYPNHLQNGTIQPS 1231
+ N G E S L D+ + N Q+ T
Sbjct: 1094 GLPN----------GGKRYPELDGSPSRL-----------ADDRAS---NGSQDVTGHRH 1129
Query: 1232 ELKEILTPVSTKLRIRSKRILRDAD-----------VENQNNGCDALHGSSLDIKPNSLP 1280
L + L P+ST LRIRSKR+ R D ++ + G DAL+ D K + L
Sbjct: 1130 NLIDSLPPISTTLRIRSKRVSRAPDTSLRQEGKPLSIDQETGGSDALNDGFEDAKCD-LA 1188
Query: 1281 EVLESDGTNRTSSDRGADGSQRLNAQID---STSEHDPLGSHSHSHDPLGSHSHSHSRKM 1337
+ DG T D LN QI S + P+ SHSH ++M
Sbjct: 1189 LDCQKDGVVGTEISLRNDCVLELNPQISDALSIANDVPV-------------SHSHPKRM 1235
Query: 1338 FNVVYRRSKTNRDRTNSEGDGGGVGE------STLNANNNNFHESATDGSRRTRSMGLKT 1391
F+ VYRR K+ + N + D E S + + HE A++G T+ GL+
Sbjct: 1236 FDFVYRR-KSRKYNNNLDRDAAITKEISPGSCSQDQGSGSKSHEGASNGFHGTQLNGLEK 1294
Query: 1392 TTCDPDNVSSNLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTS 1451
+ ++ + + NQ EE S+S T+ LRSTRNR+++
Sbjct: 1295 SEGSLTHIQDKISDSRGNQNS----------------QEELRSASGATLRLRSTRNRKST 1338
Query: 1452 YLFCDSSPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSR 1511
Y F ++ PI+ +K Q + SWL LS HEEGSRYIPQ+GDEV YLRQGHQEY+N+S R
Sbjct: 1339 YPFSETKPIETKKPQQLIENVSWLTLSIHEEGSRYIPQMGDEVAYLRQGHQEYLNFSSLR 1398
Query: 1512 EVGPWITVK-GNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLP 1570
EV PW ++K GNI+AVE CKVESLEYAT GSGDSCCKM LK IDP S V N F+LTLP
Sbjct: 1399 EVAPWTSIKGGNIKAVEICKVESLEYATLPGSGDSCCKMILKVIDPNSEVFNKAFKLTLP 1458
Query: 1571 EVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPD 1630
EV FPDFLVER+R++AAIQRNWTCRDKCKVWW++E +EDGSWW+GR+L+VKPKS +FPD
Sbjct: 1459 EVVTFPDFLVERSRYEAAIQRNWTCRDKCKVWWRDEGEEDGSWWEGRILAVKPKSPDFPD 1518
Query: 1631 SPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQ 1690
SPWERYTV+YK++P ETHLHSPWELFD+DT+WE P IDD+ RN+LLSA KLE S R Q
Sbjct: 1519 SPWERYTVKYKSDPAETHLHSPWELFDADTKWEPPHIDDEQRNRLLSALTKLETSDKRTQ 1578
Query: 1691 DQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1750
D YG++KL Q +++TNRFPVPLSL+VI+SRLENNYYR +EA++HD+AVMLSNAE++F
Sbjct: 1579 DSYGLRKLNQTVGNSSYTNRFPVPLSLEVIRSRLENNYYRSVEALRHDVAVMLSNAETFF 1638
Query: 1751 GRNTDLSTKIKRLSDLVTRTLSS 1773
GRN ++ KI LS+ R L S
Sbjct: 1639 GRNKSVAAKISNLSNWFDRMLPS 1661
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083262|emb|CBI22898.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1738 bits (4502), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 923/1260 (73%), Positives = 1015/1260 (80%), Gaps = 82/1260 (6%)
Query: 28 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 87
MAL+KYIPS DAPS +MKPLSFSSKV E QLA + S + DVD+DLREVYFLIMHFL
Sbjct: 1 MALQKYIPSGDAPSVSMKPLSFSSKVQEKVQLADPEGSPTMDADVDIDLREVYFLIMHFL 60
Query: 88 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 147
S GPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGL SGDENDDG SFPLSYNKLVERYPH
Sbjct: 61 SAGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLRSGDENDDGSSFPLSYNKLVERYPH 120
Query: 148 IEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDH 207
I KDHLVKLLKQLI++T+ PS+ MI G+ PNAADVPTLLG GSFSLL D DKG NE++
Sbjct: 121 IGKDHLVKLLKQLILSTTHPSQGMIRGNVPNAADVPTLLGTGSFSLLGNDMDKGHNEVNP 180
Query: 208 PPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR 267
PP HMRWPHM ADQVRGL LREIGGGFTRH+RAPSIRAACYA+AKPSTMVQKMQNIK++R
Sbjct: 181 PPIHMRWPHMQADQVRGLSLREIGGGFTRHNRAPSIRAACYAVAKPSTMVQKMQNIKKLR 240
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 327
GHRNAVYCAIFDR+GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV
Sbjct: 241 GHRNAVYCAIFDRTGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
Query: 328 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
AS+SNDCIIRVWRLPDGLPISVLRGHT AVTAIAFSPRP SVYQLLSSSDDGTCRIWDAR
Sbjct: 301 ASSSNDCIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSSVYQLLSSSDDGTCRIWDAR 360
Query: 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
YSQFSPRIY+PRP D++AG+N PSSS GPQSHQIFCCAFNANGTVFVTGSSDTLARVWN
Sbjct: 361 YSQFSPRIYVPRPPDSIAGKNNVPSSSNGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
Query: 448 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 507
ACK N D+SDQPNHE+D+LSGHENDVNYVQFSGCAV+SRFS+A+SSKE++ PKFKNSWF
Sbjct: 421 ACKSNPDESDQPNHEMDILSGHENDVNYVQFSGCAVSSRFSVAESSKEENVPKFKNSWFT 480
Query: 508 HDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 567
HDNIVTCSRDGSAIIWIPRSRRSH K RWT+AYHLKVPPPPMPPQPPRGGPRQRILPTP
Sbjct: 481 HDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPPRGGPRQRILPTP 540
Query: 568 RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS 627
RGVNMIVWSLDNRFVLAAIMDCRICVWNA DGSLVHSLTGHTESTYVLDVHPFNPRIAMS
Sbjct: 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHTESTYVLDVHPFNPRIAMS 600
Query: 628 AGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 687
AGYDGKTIVWDIWEG PIRIY+ +RF+LVDGKFSPDG SIILSDDVGQLYIL+TGQGESQ
Sbjct: 601 AGYDGKTIVWDIWEGTPIRIYDTARFKLVDGKFSPDGTSIILSDDVGQLYILSTGQGESQ 660
Query: 688 KDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQ 747
KDA YDQFFLGDYRPL+QDTYGNVLDQETQLAP+RRN+QD LCD+ MIPYPEPYQ+MYQQ
Sbjct: 661 KDAMYDQFFLGDYRPLIQDTYGNVLDQETQLAPYRRNMQDLLCDATMIPYPEPYQSMYQQ 720
Query: 748 RRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQ 807
RRLGALGIEWRPSSL+LAVGPDF+LDQ YQ+ PL DLDV+IDPLPEFIDVMDWEPENEVQ
Sbjct: 721 RRLGALGIEWRPSSLRLAVGPDFNLDQDYQMLPLPDLDVLIDPLPEFIDVMDWEPENEVQ 780
Query: 808 SDDNDSEYNVAEEYST-EEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQKAEV 866
+DD DSEYNV EEYST E+GSLSS SSGD ECSAEDS+ + DGLRRSKRKKQKAE
Sbjct: 781 TDDTDSEYNVTEEYSTGGEQGSLSSNSSGDPECSAEDSDVENSHKDGLRRSKRKKQKAET 840
Query: 867 EIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAARNAR 926
EIMT SGRRVKRR LDE +GN+ N RTRKS + +K S + SS SKSLRPQRAAARNA
Sbjct: 841 EIMTFSGRRVKRRNLDEFDGNSLRSN-RTRKSRSGRKVSHKNSSKSKSLRPQRAAARNAL 899
Query: 927 SFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKGKGISLD 986
+ FS++ G STDGED DGSEG+LSESES L+DS IES+ES SL NEQ KHSKGK +SLD
Sbjct: 900 TLFSRMKGTSTDGEDEDGSEGDLSESESSLEDSNIESDESDGSLQNEQCKHSKGKEVSLD 959
Query: 987 DSEDVTKL-DTPESHVNAG-IRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGTSSEAH 1044
+ ED+ K + PES +NAG RRLVLK P+RDSN+ L NQ ++G+SS+A
Sbjct: 960 EFEDMDKQHEHPESCMNAGNRRRLVLKFPIRDSNRLLLAPE-----NQ-ADLVGSSSKAP 1013
Query: 1045 QEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWGGVR 1104
QEA+E RGQ +K+ED+L+L GYKDGKIRWGGV+
Sbjct: 1014 QEASE---------------------------RGQPEKIEDHLDLFEGYKDGKIRWGGVK 1046
Query: 1105 ARSSKRLKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDISCGEEITNCGDN 1164
AR+SKRL++ E MP D + S +D E+ +NG +PEK+ IS EI
Sbjct: 1047 ARTSKRLRVVEPMPSDTDARSRQCIDGHDATENTINGFQEPEKNYDRISPHSEI------ 1100
Query: 1165 TDEVPLKNVKNLSGENNDVYSGDASCKEQQSGFSELNYYDE-SKCVNTTDEDTTPYPNHL 1223
K S F+E YDE K VN DT
Sbjct: 1101 --------------------------KYHHSSFNECMNYDEPPKQVNMVAGDTAASSVQH 1134
Query: 1224 QNGTIQPSELKEILTPVSTKLRIRSKRILRDAD----------VENQNNGCDALHGSSLD 1273
NGT P LKE T STKLRIRSK+IL D + VE+ +NG D H ++ D
Sbjct: 1135 SNGTDHPPHLKESSTS-STKLRIRSKKILEDPEIPSDPKIKSSVEDWSNGMD-FHEATTD 1192
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357449001|ref|XP_003594776.1| Bromodomain and WD repeat-containing protein [Medicago truncatula] gi|355483824|gb|AES65027.1| Bromodomain and WD repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1705 bits (4416), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 981/1868 (52%), Positives = 1238/1868 (66%), Gaps = 159/1868 (8%)
Query: 20 WDCPSGTDMALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREV 79
W+ DMAL+KY+PS DAP+ ++K LS SSK E Q ++ Q ++DVDVD+ EV
Sbjct: 23 WNKRKLGDMALQKYVPSGDAPTVSLKHLS-SSKAPEKTQPDVAN--QNHDMDVDVDIGEV 79
Query: 80 YFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS-Y 138
YFLIM FLS GPCH+T WNELLE+QLLPRRYHAWYSRSG SG +DDG SFPL Y
Sbjct: 80 YFLIMRFLSAGPCHKTCSHLWNELLENQLLPRRYHAWYSRSGASSGVPHDDGQSFPLEDY 139
Query: 139 NKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDR 198
NKL ERYPHIEKDHLVKLLKQL++N +S S M G+ PNAADVPTLLGRGSFSLLSYD
Sbjct: 140 NKLAERYPHIEKDHLVKLLKQLLLNKASLSPGMSTGNPPNAADVPTLLGRGSFSLLSYDG 199
Query: 199 DKGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQ 258
DK E+ PP +MRWPH A+QV GL LREIGGG RHHRAPSIRAACYAIAKPSTMVQ
Sbjct: 200 DKVNEEVKPPPPYMRWPHTKANQVHGLHLREIGGGLPRHHRAPSIRAACYAIAKPSTMVQ 259
Query: 259 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGS----------------------------- 289
KMQNIKR+RGH NAVYCAIFDRSGRYVITGS
Sbjct: 260 KMQNIKRIRGHCNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYSLASCRGHVGDITDL 319
Query: 290 -------------DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCII 336
+D ++++W + ++ RGH G +T A+ S + +
Sbjct: 320 AVSSNNALVASSSNDYIIRVWRLPDGLPISVLRGHTGAVT--------AIAFSPRPNAVY 371
Query: 337 RVWRLPDGLPISVLRGHTAAVTAIAFSPRP--------GSVYQLLSSSDDGTCRIWDARY 388
++ D + T + P+P G + S C ++A
Sbjct: 372 QLLSSSDDGTCRIWDARYTHSTPRLYVPKPSDSTGRSSGPSSNTMPQSHQIFCCAFNANG 431
Query: 389 SQFSPRIYIPRPSDAVA-GRNMAPSSSAGPQSHQIFCCAFNANGTVF---------VTGS 438
+ +++ SD +A R+ + + ++F + +A V + S
Sbjct: 432 T-----VFVTGSSDNLARWRSRVAGACYLKNADELFKVSASAACMVAQITARLGYDIMQS 486
Query: 439 SDT------------LAR--VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVA 484
D+ LA VWNACK + +D +QPNHEIDVLSGHENDVNYVQFSGC VA
Sbjct: 487 QDSRPPLDELSFQFDLAPYPVWNACKLSMEDVEQPNHEIDVLSGHENDVNYVQFSGCTVA 546
Query: 485 SRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHP------------ 532
SRFS ++ KED+ PKFKNSW HDNIVTCSRDGSAIIWIP+SRRSH
Sbjct: 547 SRFSTTETWKEDNIPKFKNSWLNHDNIVTCSRDGSAIIWIPKSRRSHVSLSNIFSFYRCF 606
Query: 533 --------------KAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 578
K+ RWT+AYHL+VPPPPMPPQP RGGPRQRILPTPRGVNMI WSLD
Sbjct: 607 QLHSPPPLKKGRVGKSGRWTRAYHLRVPPPPMPPQPQRGGPRQRILPTPRGVNMIAWSLD 666
Query: 579 NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638
NRFVLAAIMDCRICVWNA+DGSLVHSLTGHTESTYVLDVHPFNPRI MSAGYDG+TIVWD
Sbjct: 667 NRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIVMSAGYDGRTIVWD 726
Query: 639 IWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLG 698
IWEG+PIRI+EISRF++VDGKFSPDG SIILSDD GQLYILNTGQGESQKDAKYDQFFLG
Sbjct: 727 IWEGVPIRIFEISRFKMVDGKFSPDGTSIILSDDAGQLYILNTGQGESQKDAKYDQFFLG 786
Query: 699 DYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWR 758
DYRPL+QDT+GNVLDQETQ+ P+RRNLQD LCDSAMIPYPEPYQ+ +Q+RRLGALG +WR
Sbjct: 787 DYRPLIQDTHGNVLDQETQITPYRRNLQDLLCDSAMIPYPEPYQSEFQRRRLGALGHDWR 846
Query: 759 PSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQSDDNDSEYNVA 818
PS LKLA+G DFSLD Y + PLADLD + +PLPEFID MDWEP+ EV DD DSEYN+
Sbjct: 847 PSPLKLAIGTDFSLDPAYHMLPLADLDQLAEPLPEFIDAMDWEPDIEVLVDDTDSEYNLT 906
Query: 819 EEYSTE-EKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQKAEVEIMTSSGRRVK 877
++ S+ EKG SS +SGD CS ++S+D + MD +RRSKRKKQK +E MTSSGRRVK
Sbjct: 907 DDSSSRGEKGCSSSNASGDPGCSTDNSDDEDTHMDCIRRSKRKKQKTGIETMTSSGRRVK 966
Query: 878 RRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAARNARSFFSKITGAST 937
RR LDE EGN ++ + ++ S R+ S + S + AA FSKITG
Sbjct: 967 RRNLDECEGNVHSSSRSRKGKSGKKSSRRKSSKSKSSRPRRAAARNALH-LFSKITGTPN 1025
Query: 938 DGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKGKGISLDDSEDVTKLDTP 997
+GE+ D G+ S+S+S LQ+S I+S+ESGR+ N+QR +SKGK + L +SED +
Sbjct: 1026 EGEE-DSLVGDSSDSDSTLQESNIDSDESGRASENDQRNYSKGKEVLLYESEDSKSHEFT 1084
Query: 998 ESHVNAGIRRLVLKLPVRDSNK--HELQERTSDKCNQLVSVIGTSSEAHQEATEGNGNRV 1055
E+ VN RRLVLKLP+RDS+K HE + + ++G+SS+ QE + N R
Sbjct: 1085 ETRVNR--RRLVLKLPIRDSSKPAHEFENQ--------AELVGSSSKTAQEFPDFNRKRP 1134
Query: 1056 SYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWGGVRARSSKRLKIGE 1115
S + + +ER + + D++ D+++L K+RWG VRARS+K L++ E
Sbjct: 1135 SSSEPGYCLGNGSYSSIERTDQVKLDQVTDHVDLLE-----KLRWGVVRARSAKPLRMRE 1189
Query: 1116 MMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDISC-GEEITNCGDNTDEVPLKNVK 1174
+PL AN S + E+E GH + +KD S EI N GD D + N +
Sbjct: 1190 DVPLGANPNSVECRNHLNEEEIVSVGHDREDKDFSGTSTPALEIQN-GDKVDSLTEIN-E 1247
Query: 1175 NLSGENNDVYSGDASCKEQQSGFSELNYYDESKCVNTTDEDTTPYPNHLQNGTIQPSELK 1234
N +G + ++ + E + S DES + + + Q+G Q E
Sbjct: 1248 NCAGTTSQPFNLTEN-GEPLTASSNYRDQDESLVSASMIPENNIFVPVGQSGADQLPEPN 1306
Query: 1235 EILTPVSTKLRIRSKRILRDADVENQNNGCDALHGSSLDIKPNSLPEVLESDGTN-RTSS 1293
VSTKLR SKR R+ + + ++ ++ ++ E + +
Sbjct: 1307 IGFPSVSTKLR--SKRGTRNPESPCKPETKSSVLNNNASSSNANINVNNEEHVVVVKDDN 1364
Query: 1294 DRGADGSQRLNA--QIDSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRSKTNRDR 1351
+ G +QR N ++D ++ S SHD L HS+ KMF VYRRS+++R
Sbjct: 1365 NTGVTSNQRENCSPEVDVQAKQ-----VSTSHDSL--EPHSNRDKMFKAVYRRSRSHRAV 1417
Query: 1352 TNSEGDGGGVGESTLNANNNNFH----ESATDGSRRTR-SMGLKTTTCDPDNVSSNLRLE 1406
TN DG G+GEST N +N+NF+ + T+ + T S+ L+ +C P+N SNL+++
Sbjct: 1418 TNL-ADGSGLGESTSNGSNSNFNVAVDSNGTNEALHTNGSLELEQGSCVPNNEQSNLKVQ 1476
Query: 1407 QHNQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTSYLFCDSSPIDRRKTH 1466
Q N + N S ++ +L EE GSSSK+TVGLRSTRNRR++Y ++SP++RRK+
Sbjct: 1477 QGNGSCMVRIPQNVSPNKGKLTEEERGSSSKLTVGLRSTRNRRSTYNIRETSPVNRRKSL 1536
Query: 1467 QSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSREVGPWITVKGNIRAV 1526
QS KGSWL+LSTHEEG RYIPQ GDEVVYLRQGHQEYI YS RE GPW+++K ++RAV
Sbjct: 1537 QSAVKGSWLLLSTHEEGCRYIPQQGDEVVYLRQGHQEYIEYSRKRESGPWVSLKEHLRAV 1596
Query: 1527 EFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLVERTRFD 1586
E+C+V+SLEY+ GSGDSCCKMTL+F+DP SSV TF+LTLPEVTGFPDFLVERTRFD
Sbjct: 1597 EYCRVQSLEYSHVPGSGDSCCKMTLEFLDPNSSVVGKTFKLTLPEVTGFPDFLVERTRFD 1656
Query: 1587 AAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTE 1646
AAIQRNWT RDKC+VWWKNE + G+WW+GR+ VK KSSEFPDSPWERY+V+YK++ ++
Sbjct: 1657 AAIQRNWTRRDKCRVWWKNEDNSSGNWWEGRIQFVKAKSSEFPDSPWERYSVRYKSDLSD 1716
Query: 1647 THLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTN 1706
HLHSPWELFD+DTQWEQP IDD RNKLLSA K++QS N VQD+YG+ +L+++S K+
Sbjct: 1717 EHLHSPWELFDADTQWEQPHIDDHTRNKLLSALTKVQQSGNTVQDRYGLHELEKISNKSK 1776
Query: 1707 FTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1766
FTNRFPVPLS+++IQSRLEN+YYR L+A+KHD++++L+NA S+F ++ ++TKIK LS+
Sbjct: 1777 FTNRFPVPLSIELIQSRLENSYYRSLDALKHDVSILLTNANSFFEKDLVMTTKIKHLSEW 1836
Query: 1767 VTRTLSSL 1774
TRTLSSL
Sbjct: 1837 FTRTLSSL 1844
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501869|ref|XP_003519746.1| PREDICTED: uncharacterized protein LOC100796497 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1691 bits (4380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 947/1759 (53%), Positives = 1172/1759 (66%), Gaps = 130/1759 (7%)
Query: 68 AELDVDVDLREVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDE 127
E DVD+DLRE+YFLIMHFLS GPCHRT+ F ELLEHQLLPRRYHAW+SRSG PSGD+
Sbjct: 39 VETDVDIDLREIYFLIMHFLSVGPCHRTFLNFKEELLEHQLLPRRYHAWFSRSGEPSGDD 98
Query: 128 NDD---GMSFPLSYNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPT 184
D+ G+S PL Y+ LV RYPHI KDHLVKLLKQL+++T +P + G +PNAADVPT
Sbjct: 99 ADEDDDGISLPLDYSNLVGRYPHITKDHLVKLLKQLMLSTVNPLHGKLEGSSPNAADVPT 158
Query: 185 LLGRGSFSLLSYDRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIR 244
LLG GSFSLL+ DR + PP +MRWPHM A+QV+GL LREIGGGFT+HHR+PSIR
Sbjct: 159 LLGYGSFSLLNVDRKTADKLVKPPPLYMRWPHMKANQVQGLSLREIGGGFTKHHRSPSIR 218
Query: 245 AACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC 304
+ACYAIAKPSTMVQKMQNIK++RGHR AVYCAIFD SGRYVI+GSDDRLVKIWSMETA+C
Sbjct: 219 SACYAIAKPSTMVQKMQNIKKLRGHRVAVYCAIFDGSGRYVISGSDDRLVKIWSMETAFC 278
Query: 305 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 364
LASCRGHEGDITDLAVSSNNALVASASND +IRVWRLPDG+PISVLRGHT AV I FSP
Sbjct: 279 LASCRGHEGDITDLAVSSNNALVASASNDFVIRVWRLPDGMPISVLRGHTGAVNTITFSP 338
Query: 365 RPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP-----SSSAGPQS 419
+YQLLSSSDDGTCRIWDAR S +PRIY+PRP DA+ G+ AP SSS QS
Sbjct: 339 --SVIYQLLSSSDDGTCRIWDARNSH-NPRIYVPRPPDAINGKGNAPPASLPSSSNVQQS 395
Query: 420 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 479
+Q+ CCA+NANGTVFVTGSSDT ARVW+A KPNTDD++QP HE+D+LSGHENDVNYVQFS
Sbjct: 396 YQVLCCAYNANGTVFVTGSSDTYARVWSALKPNTDDAEQPIHEMDLLSGHENDVNYVQFS 455
Query: 480 GCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQ 539
GC+VAS+ +D KE++T KF+N W+CHDNIVTCSRDGSAIIW+PRSR+SH K RWT+
Sbjct: 456 GCSVASKILTSDPWKEENTLKFRNFWYCHDNIVTCSRDGSAIIWVPRSRKSHGKVGRWTR 515
Query: 540 AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG 599
AYHLKVPPPP+PPQPPRGGPRQR LPTPRGVNMI+WSLDNRFVLAAIMDCRICVWNA DG
Sbjct: 516 AYHLKVPPPPLPPQPPRGGPRQRFLPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNAVDG 575
Query: 600 SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGK 659
SLVHSLTGHTES+YVLDVHPFNPRIAMSAGYDG+TIVWDIWEGIPIR YEI RF+LVDGK
Sbjct: 576 SLVHSLTGHTESSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGIPIRTYEIGRFKLVDGK 635
Query: 660 FSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLA 719
FSPDG SI+LSDDVGQ+Y LNTGQGESQKDAKYDQFFLGDYRPL+QDT G VLDQETQL
Sbjct: 636 FSPDGTSIVLSDDVGQIYFLNTGQGESQKDAKYDQFFLGDYRPLIQDTQGYVLDQETQLP 695
Query: 720 PHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQ 779
PHRRN+Q+PLCDS+M+PYPEPYQ+ +QQRRLGALGIEWRPS +K AVGPDF++ Q Y +
Sbjct: 696 PHRRNIQEPLCDSSMLPYPEPYQSQFQQRRLGALGIEWRPSLIKYAVGPDFTVGQDYPVV 755
Query: 780 PLADLDVMIDPLPEFIDVMDWEPENE-VQSDDNDSEYNVAEEYSTEEKGSLSSTSSGDSE 838
PL DL+VM++P PEF+D M WEPE + + SDD DSEYN A E S+ G S SS D E
Sbjct: 756 PLVDLEVMVEPQPEFLDAMFWEPEYDIIVSDDADSEYN-ANEDSSSAAGQGSVISSSDLE 814
Query: 839 CSAEDSEDGENPMDGLRRSKRKKQKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKS 898
S D + DGLRRS+RKK +MTSSGRRV++R LDE GN + N+ +KS
Sbjct: 815 YS-----DDSSNRDGLRRSRRKKHN----VMTSSGRRVRKRNLDECNGNTSGSNRLRKKS 865
Query: 899 GNRQKSSRRKSSTSKSLRPQRAAARNARSFFSKITGASTDGEDVDGSEGELSESESDLQD 958
K+S+RKSS +K+LRPQR AA NARS FS+I STDGED D E E S+S D D
Sbjct: 866 KGSSKASKRKSSIAKTLRPQRIAAHNARSMFSQIDETSTDGEDNDSDE-EASDSFQDPDD 924
Query: 959 SYIESEESGRSLLNEQRKHSKGKGISLDDSEDVTKLDT-PESHVNAGIR-RLVLKLPVRD 1016
ES R + N KH + K L+ V+K ES VN R RLV+K +RD
Sbjct: 925 ----LSESEREMDN---KHLEIKKPLLEKFATVSKPPAFSESLVNVETRPRLVVKFSLRD 977
Query: 1017 SNKHELQERTSDKCNQLVSVIGTSSEAHQEATEGNG--NRVSYVGNNCSSVDANCGLMER 1074
S K+ E T C +++ SS E ++ + S S V N L +
Sbjct: 978 SKKNVPTEDTRLACETQDNMVSQSSRPQPEESDQKTFPDTKSLDPALSSMVATNAELPQS 1037
Query: 1075 RGRGQFDKLEDYLNLSNGYKDGKIRWGGVRARSSKRLKIGEMMPLDANNGSGIHLDDDKE 1134
+ D E N +N R+ +++K + + + D
Sbjct: 1038 LNGNENDDKEQTENATNNLY--AFRYVEANTDQCRKMKTHTHELSRSGDALLTDAEIDDL 1095
Query: 1135 KESEVNGHVKPEKD-----GIDISCGEEITNCGDNTDEVPLKNVKNLSGENNDVY----- 1184
E NG+VKPE + + E NT+ ++ S ++
Sbjct: 1096 LEHNANGYVKPEMNLRKRRSEHVIGKLETVGSMVNTELTDFEDAPKFSSLEPSLFGNPQP 1155
Query: 1185 SGDASCKEQQSGFSELNYYDES-----KCVNTTDEDTTPYPNHLQNGTIQPSELKEI--L 1237
+ D S SG+ + N D+ KC T E+ N + S ++
Sbjct: 1156 NADGSL---TSGYDKFNEGDKGQSGSDKCAEDTLEN---------NEVVHSSHCHDLKMK 1203
Query: 1238 TPV-STKLRIRSKRILRDAD--------VENQNNGCD---ALHGSSLDIKPNSLPEVLES 1285
PV STKL I+ K+I D + ++ C + +S + PN + EV E
Sbjct: 1204 APVKSTKLVIKKKQISADTEGPCKLKIVSSKADSSCARGIGISENSSSMGPNLVTEVPEG 1263
Query: 1286 DGTNRTSSDRGADGSQRLNAQIDSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRS 1345
+ + SS P HS+S R ++ ++R
Sbjct: 1264 EDDRKFSS-------------------------------PQLLHSYSDKRS-YDHFHKRD 1291
Query: 1346 KTNRDRTNSEGDGG---GVGESTLNANNNN-----FHESATDGSRRTRSMGLKTTTCDPD 1397
K+ + + N +G +GE T +N + + +D R+TR + +KTT+ +P
Sbjct: 1292 KSYKGKVNQDGFESFDCDMGEHTSVFSNQHGLGIGLSDVTSDPMRQTRFIRMKTTSEEPS 1351
Query: 1398 NVSSNLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTSYLFCDS 1457
+ +++ Q Q S S++R S ++ +R+ R+R Y+ DS
Sbjct: 1352 TSNRRIKIRQ-GQSSRGKSDREDSSTRM---------SDQLHRRIRTARHRNGEYIANDS 1401
Query: 1458 SPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSREVGPWI 1517
+ RR ++ ++K SWLMLS EEG RYIPQLGDEVVYLRQGHQEYI E GPW
Sbjct: 1402 GTLTRRVSNHHVKKLSWLMLSEPEEGYRYIPQLGDEVVYLRQGHQEYIKSYSLSESGPWR 1461
Query: 1518 TVKGNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPD 1577
+ G + A E CKVE LEYA GSGDSCCK+ L+F+DP+S V +F+LTLPE+ F D
Sbjct: 1462 SFTG-LGASEICKVEELEYAELPGSGDSCCKLKLRFLDPSSCVHGKSFKLTLPELINFTD 1520
Query: 1578 FLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYT 1637
F++E+T +D A++RNW+ RDKC VWW+NE + GSWWDGR++ V+ KS +FP+SPWERY
Sbjct: 1521 FVIEKTWYDTAMKRNWSSRDKCMVWWRNEDGKGGSWWDGRIIQVQAKSDDFPESPWERYR 1580
Query: 1638 VQYKTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQK 1697
VQYKT+PTE HLHSPWEL+DS+ WE P ID + R+KLLS F KL++ +R ++++ +Q
Sbjct: 1581 VQYKTDPTENHLHSPWELYDSEMLWEHPHIDHEIRDKLLSYFTKLDRRVSRYEERFDIQA 1640
Query: 1698 LKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFG--RNTD 1755
L QV++K F NRFP P ++IQSRL+N+YYR +E V HDI +MLSNAE YF +N
Sbjct: 1641 LNQVAEKLEFANRFPAPFYPELIQSRLKNDYYRSVEGVNHDIMIMLSNAEEYFKITKNVQ 1700
Query: 1756 LSTKIKRLSDLVTRTLSSL 1774
L KI+R+S+ R L +
Sbjct: 1701 LVGKIRRISEWFRRKLERI 1719
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1784 | ||||||
| TAIR|locus:2158044 | 1677 | AT5G49430 "AT5G49430" [Arabido | 0.658 | 0.700 | 0.579 | 0.0 | |
| TAIR|locus:2061997 | 1520 | AT2G47410 "AT2G47410" [Arabido | 0.495 | 0.581 | 0.672 | 0.0 | |
| UNIPROTKB|E1BSG1 | 2293 | BRWD1 "Uncharacterized protein | 0.147 | 0.114 | 0.305 | 6.5e-79 | |
| RGD|1559445 | 1799 | Brwd3 "bromodomain and WD repe | 0.163 | 0.161 | 0.312 | 2.4e-74 | |
| FB|FBgn0011785 | 2232 | BRWD3 "BRWD3" [Drosophila mela | 0.204 | 0.163 | 0.259 | 4e-73 | |
| DICTYBASE|DDB_G0285837 | 2200 | DDB_G0285837 "BRWD group prote | 0.124 | 0.100 | 0.319 | 1.8e-59 | |
| MGI|MGI:1890651 | 2304 | Brwd1 "bromodomain and WD repe | 0.216 | 0.167 | 0.273 | 6.7e-57 | |
| RGD|1309030 | 2303 | Brwd1 "bromodomain and WD repe | 0.216 | 0.168 | 0.271 | 2.7e-55 | |
| UNIPROTKB|Q9NSI6 | 2320 | BRWD1 "Bromodomain and WD repe | 0.216 | 0.166 | 0.269 | 5.4e-55 | |
| UNIPROTKB|Q8WWQ0 | 1821 | PHIP "PH-interacting protein" | 0.241 | 0.236 | 0.280 | 4.8e-54 |
| TAIR|locus:2158044 AT5G49430 "AT5G49430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3415 (1207.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 705/1216 (57%), Positives = 837/1216 (68%)
Query: 28 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 87
MALRK P D+ S MKPL+FS K+ N Q+ D Q ++D+DLREVYFL++H L
Sbjct: 1 MALRKNTPKGDSVSLPMKPLNFSRKLPGNVQIPDPDIVQSVAPNIDLDLREVYFLMLHLL 60
Query: 88 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 147
S+GPC +TY +ELLEH+LLPRRYHAWYSRSGLPSGDENDDG SFPL+Y +L +RY H
Sbjct: 61 SSGPCQKTYALLRHELLEHELLPRRYHAWYSRSGLPSGDENDDGNSFPLNYTELAKRYSH 120
Query: 148 IEKDHLVKLLKQLII--NTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEI 205
++KDHLV+LLKQL+ N +PSR + G+ A VPTLLG GSFSLLS D++ +++
Sbjct: 121 VKKDHLVELLKQLVFVSNRPNPSRGIGDGNKMIGAGVPTLLGTGSFSLLSSDKEIVGSDL 180
Query: 206 DHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKR 265
PP MRWPHM+ADQVRG+ LREIGGGF RHHRAPSIRAACY IAKPS+MVQKMQNIKR
Sbjct: 181 KPPPIGMRWPHMHADQVRGISLREIGGGFARHHRAPSIRAACYVIAKPSSMVQKMQNIKR 240
Query: 266 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXX 325
+RGHRNAVYCAI DRSGRYVITGSDDRLVK+WSM+TAYCLASCRGHEGDITD
Sbjct: 241 LRGHRNAVYCAILDRSGRYVITGSDDRLVKVWSMDTAYCLASCRGHEGDITDLAVSSNNI 300
Query: 326 XXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 385
DC+IRVWRLPDGLP+SVLRGHT AVTAIAFSPRPGS YQLLSSSDDGTCRIWD
Sbjct: 301 FIASASNDCVIRVWRLPDGLPVSVLRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIWD 360
Query: 386 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 445
AR +QF+PRIY+PRP G+N PSSS QSHQIFCCAFNA+G+VFVTGSSDTLARV
Sbjct: 361 ARGAQFAPRIYVPRPPSP-DGKNSGPSSSNAQQSHQIFCCAFNASGSVFVTGSSDTLARV 419
Query: 446 ---WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 502
W+A K NTDD +QPNHE+DVL+GHENDVNYVQFSGCA S+FS+ D SK+++ PKFK
Sbjct: 420 YSVWSANKTNTDDPEQPNHEMDVLAGHENDVNYVQFSGCAAGSKFSVTDYSKDENVPKFK 479
Query: 503 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXX 562
NSWFCHDNIVTCSRDGSAIIWIPR RRSH K+ RWT+AYHLKV
Sbjct: 480 NSWFCHDNIVTCSRDGSAIIWIPRLRRSHGKSCRWTRAYHLKVPPPPMPPQPPRGGPRQR 539
Query: 563 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 622
ILPTPRGVNMI WSLDNRFVLAAIMDCRICVWNA+DGSLVHSLTGHT STYV+DVHPFNP
Sbjct: 540 ILPTPRGVNMIAWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTASTYVMDVHPFNP 599
Query: 623 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 682
RIAMSAGYDGKTIVWDIWEGIPI+IY+IS ++LVDGKFSPDG SIILSDDVGQLYIL+TG
Sbjct: 600 RIAMSAGYDGKTIVWDIWEGIPIQIYDISHYKLVDGKFSPDGTSIILSDDVGQLYILSTG 659
Query: 683 QGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQ 742
QG+SQKDAKYDQFFLGDYRPL+QDTYGNVLDQE+QL P+RRN++DPLCDS MIPY EPYQ
Sbjct: 660 QGDSQKDAKYDQFFLGDYRPLIQDTYGNVLDQESQLQPYRRNMEDPLCDSGMIPYEEPYQ 719
Query: 743 TMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEP 802
T +Q+RRLGALG EWRPSSLKLAVGPD +LD+ YQ+ PLADLD + +PLPEFIDVM+WEP
Sbjct: 720 TTFQKRRLGALGKEWRPSSLKLAVGPDITLDRDYQMPPLADLD-LAEPLPEFIDVMEWEP 778
Query: 803 ENEVQSDDNDSEYNVAEEYXXXXXXX-XXXXXXXXXXXXXXDSEDGENPMDGLRRSKRKK 861
E ++ SD+NDSEYNV EEY +S + ++ + LRRSKRKK
Sbjct: 779 EVDILSDENDSEYNVPEEYSSGKEQECLNSSTSGESGSSSGESYEDDDHQNSLRRSKRKK 838
Query: 862 QKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTXXXXXXXXXXXXXXXXXXXLRPQXXX 921
K E IMTSSGRRVK+R DE EG A KRT RP+
Sbjct: 839 HKKEAGIMTSSGRRVKKRNFDELEG-APSNKKRTRKSRSGRKESKRKSSKSKSSRPRRAA 897
Query: 922 XXXXXSFFSKITGASTXXXXXXXXXXXXXXXXXXXXXXYIESE-ESGRSLLNEQRKHSKG 980
S+FSKITG S + E +LLN K SKG
Sbjct: 898 ARNALSWFSKITGTSKDAEEEEVSELSDSSESESTTQDSGTGDSELEVALLNGHGKQSKG 957
Query: 981 KGISLDDSED-VTKLDTPESHVNAGIRRLVLKLPVRDSNKHELQERT-SDKCNQLVSVIG 1038
K I + DS+D + D E+H A RRLVL+ PVR+S+K L E C+ +G
Sbjct: 958 KTILVCDSDDGAQQCDIRETHT-AERRRLVLRFPVRNSDKLTLLENLPGSSCDVPSPTLG 1016
Query: 1039 TSSEAHQEATEGNGNRVSYVGNNCSSVDANCGLME----RRGRGQFDKLEDYLNLS---- 1090
E + GN+ + G + S V G+++ +R RG+ + +
Sbjct: 1017 NGCT---EDSRIPGNQ--FEGLDVSKV--KWGMVKARTTKRIRGEAISSHELMGSDPEGK 1069
Query: 1091 -NGYK-DGKIRWGGVRARSSKRLKIG-EMMPLDANNGSGIHLDDDKEKESEVNGHVKPEK 1147
N K D R GV A S LK + M +D + L + ++ E++G
Sbjct: 1070 ENNVKEDSNHRGNGVTAPSCLELKTDIDDMAVDTDTVISNGLPNGGKRYPELDGSPSRVA 1129
Query: 1148 DGIDISCGEEITNCGDNTDEVP-----LK-NVKNLSG--ENNDVYSGDASCKEQQSGFSE 1199
D + + +T+ D D +P LK K +S + + G + +Q++G S+
Sbjct: 1130 DDKASNSSQNVTHRHDLIDSLPPISTTLKIRSKRVSRAPDTSLRQEGKSLSIDQETGGSD 1189
Query: 1200 -LNY-YDESKCVNTTD 1213
LN ++++KC T D
Sbjct: 1190 ALNDGFEDAKCDLTLD 1205
|
|
| TAIR|locus:2061997 AT2G47410 "AT2G47410" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3132 (1107.6 bits), Expect = 0., Sum P(3) = 0.
Identities = 601/894 (67%), Positives = 686/894 (76%)
Query: 44 MKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFLSTGPCHRTYGQFWNEL 103
M+P + + V N L D S + D+D+DLREVYFLI+HFLS GPC RT+G +E+
Sbjct: 11 MEPSNLAKLVQGNVPLQPHD-SHSSLTDLDMDLREVYFLILHFLSIGPCERTFGHLRDEI 69
Query: 104 LEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPHIEKDHLVKLLKQLIIN 163
LE LLPRRYH+W+SRSG+ SG +DDG+S PLSY+ L+ERYPHIEKDHLVKLLKQLI+N
Sbjct: 70 LEKGLLPRRYHSWWSRSGIYSGRADDDGISLPLSYDNLIERYPHIEKDHLVKLLKQLILN 129
Query: 164 TSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDHPPAHMRWPHMYADQVR 223
S PS + G+APNAADVPTLLG G+FSL+ + + H +++RWPHM+ADQVR
Sbjct: 130 PSFPSHMRVEGNAPNAADVPTLLGSGTFSLVDRSNNIESQKARHVASYLRWPHMHADQVR 189
Query: 224 GLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGR 283
GL LREIGGGF +HHRAPSI +AC+AIAKPSTMVQKMQNIK++RGHRNAVYCAIFDRSGR
Sbjct: 190 GLSLREIGGGFRKHHRAPSILSACHAIAKPSTMVQKMQNIKKLRGHRNAVYCAIFDRSGR 249
Query: 284 YVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPD 343
YVITGSDDRLVKIWSMETA CLASCRGHEGDITD D +IRVWRLPD
Sbjct: 250 YVITGSDDRLVKIWSMETALCLASCRGHEGDITDLAVSSNNALVASASNDFVIRVWRLPD 309
Query: 344 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 403
G+PISVLRGHT AVTAIAFSPR SVYQLLSSSDDGTCRIWDARYSQ+ PRIY+P PSDA
Sbjct: 310 GMPISVLRGHTGAVTAIAFSPRQASVYQLLSSSDDGTCRIWDARYSQWLPRIYVPSPSDA 369
Query: 404 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 463
G S+S QSHQI CCA+NANGT+FVTGSSD+ ARVW+A KPN DD++QP HE+
Sbjct: 370 NTG-----STSNASQSHQILCCAYNANGTIFVTGSSDSNARVWSASKPNLDDAEQPTHEL 424
Query: 464 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 523
DVL GHENDVNYVQFSGCAVA + S AD+ KEDS PKFKNSWFCHDNIVTCSRDGSAIIW
Sbjct: 425 DVLRGHENDVNYVQFSGCAVAPKSSTADALKEDSYPKFKNSWFCHDNIVTCSRDGSAIIW 484
Query: 524 IPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRGVNMIVWSLDNRFVL 583
PRSR+ H K+ RW + YHLKV LPTPRGVNMI+WSLDNRFVL
Sbjct: 485 TPRSRKFHGKSGRWMKGYHLKVPPPPLPPQPPRGGPRQRFLPTPRGVNMIIWSLDNRFVL 544
Query: 584 AAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI 643
AAIMDCRICVWNAADGSLVH LTGH+ES+YVLDVHPFNPRIAMSAGYDGKTI+WDIWEGI
Sbjct: 545 AAIMDCRICVWNAADGSLVHCLTGHSESSYVLDVHPFNPRIAMSAGYDGKTIIWDIWEGI 604
Query: 644 PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPL 703
PI++YEI RF+LVDGKFS DG SI+LSDDVGQ+Y LNTGQGESQK+AKYDQFFLGDYRPL
Sbjct: 605 PIKVYEIGRFKLVDGKFSQDGTSIVLSDDVGQIYFLNTGQGESQKNAKYDQFFLGDYRPL 664
Query: 704 VQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLK 763
++DT G+VLDQETQL PHRRNLQD LCDS+MIPYPEP QTM+QQRRLGALG+EWRPSS+K
Sbjct: 665 IRDTNGHVLDQETQLLPHRRNLQDLLCDSSMIPYPEPDQTMFQQRRLGALGVEWRPSSIK 724
Query: 764 LAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQSDDNDSEYNVAEEYXX 823
+VGPDFSL Q Y + PLADLD +I+PLPEFID M WEPE+EV SDDNDSEYN AE
Sbjct: 725 FSVGPDFSLGQDYIMPPLADLDRLIEPLPEFIDAMYWEPEHEVLSDDNDSEYN-AEVSSD 783
Query: 824 XXXXXXXXXXXXXXXXXXXDSEDGENPMDGLRRSKRKKQKAEVEIMTSSGRRVKRRILDE 883
DS D EN + KR+++ +V + TSSGRR KR ILDE
Sbjct: 784 GARASPCSNSSNELECSSEDS-DVENIHESSYHWKRRRKHPKVNVSTSSGRRDKR-ILDE 841
Query: 884 SEGNAAFGNKRTXXXXXXXXXXXXXXXXXXXLRPQXXXXXXXXSFFSKITGAST 937
++ + + G KRT RPQ S SKI+G+S+
Sbjct: 842 NDSSNS-GIKRTKNRRIVVKASKRKHSDVKASRPQRAAAQNARSLLSKISGSSS 894
|
|
| UNIPROTKB|E1BSG1 BRWD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 330 (121.2 bits), Expect = 6.5e-79, Sum P(6) = 6.5e-79
Identities = 91/298 (30%), Positives = 139/298 (46%)
Query: 467 SGHENDVNYVQFSGCAVASRFSLADSSKED-STPKFKNSWFCHDNIVTCSRDGSAIIWIP 525
+G + V + + G R + +S + + +F NS D ++ SRDG+A IW
Sbjct: 344 TGSTDHVIRMYYFGSETPERIAELESHADKVDSIQFSNSG---DRFISGSRDGTARIW-- 398
Query: 526 RSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRGVNMIVWSLDNRFVLAA 585
R+ +A + P+ V MI W+ D+ +V+ A
Sbjct: 399 ----------RFEEAEWRSILLDMSDRLPGDMCSDEDKFMRPK-VTMIAWNQDDNYVVTA 447
Query: 586 IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 645
+ + + VWN++ G L+H L GH + +VL+ HPF+ RI +SAG+DG +WDI +G
Sbjct: 448 VNNHLLKVWNSSTGQLLHDLVGHADEVFVLETHPFDSRIMLSAGHDGNIFIWDITKGTKT 507
Query: 646 RIYEISRFRLVDG---------KFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFF 696
+ Y F +++G KFSPDG +D G L I G + + FF
Sbjct: 508 KHY----FNMIEGQGHGAVFDCKFSPDGQHFACTDSHGHLLIFGFGCSKPYEKIPDQMFF 563
Query: 697 LGDYRPLVQDTYGNVLDQETQLAPHRRNLQDP--LCDSAMIPYPEPYQTMYQQRRLGA 752
DYRPL++D+ VLD++TQ APH L P L D P+P YQ + R A
Sbjct: 564 HTDYRPLIRDSNNYVLDEQTQQAPH---LMPPPFLVDVDGNPHPTKYQRLVPGRENSA 618
|
|
| RGD|1559445 Brwd3 "bromodomain and WD repeat domain containing 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 2.4e-74, Sum P(6) = 2.4e-74
Identities = 101/323 (31%), Positives = 149/323 (46%)
Query: 130 DGMSFPLSYNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAAD-VPTLLGR 188
+G S+ LV HI D+L+K+ +++ P ++ + P + V TLLG
Sbjct: 49 EGKEHRRSFEDLVAANAHIPPDYLLKICERI-----GP---LLDKEIPQSVPGVQTLLGV 100
Query: 189 GSFSLLSYDRD-KGQ--NEIDHPPAHM-RWPHMYADQVRGLGLREIGGGFTRHHRAPSIR 244
G SLL +D K N H R P + + V+ + I R S R
Sbjct: 101 GRQSLLRDAKDCKNTLWNGSAFAALHRGRPPELPVNYVKPPNVVNIXS--XRQXTGCS-R 157
Query: 245 AACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC 304
+ PS+ Q ++ KR+ GH ++VYC FDRSGR + TGSDD LVKIW+ +
Sbjct: 158 ---FXHXFPSSAYQHIKMHKRILGHLSSVYCVAFDRSGRRIFTGSDDCLVKIWATDDGRL 214
Query: 305 LASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 364
LA+ RGH +I+D D ++RVW L P++VL+GH+A++T+I F P
Sbjct: 215 LATLRGHSAEISDMAVNYENTLIAAGSCDKVVRVWCLRTCAPVAVLQGHSASITSIQFCP 274
Query: 365 RP-GSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 423
G+ L S+ DGT W R RP S G Q I
Sbjct: 275 STKGTTRYLTSTGADGTICFWQWHVKTMKFR---DRPV------KFTERSRPGVQ---IS 322
Query: 424 CCAFNANGTVFVTGSSDTLARVW 446
C +F++ G TGS+D + R++
Sbjct: 323 CSSFSSGGMFITTGSTDHVIRIY 345
|
|
| FB|FBgn0011785 BRWD3 "BRWD3" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 309 (113.8 bits), Expect = 4.0e-73, Sum P(4) = 4.0e-73
Identities = 112/432 (25%), Positives = 189/432 (43%)
Query: 137 SYNKLVERYPHIEKDHLVKLLKQL--IINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLL 194
++ +L +Y HI +HL+++ +L +++ P P+ + +LLG G +LL
Sbjct: 60 TFEELERKYKHIGANHLLEICSRLGPLVDRELP---------PSVPGINSLLGTGRQNLL 110
Query: 195 SYD---------RD--KGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSI 243
RD N + P + + P D+V L RE GG R
Sbjct: 111 RTKETVYCHRSLRDYCTRLNGVSLPDSVLTKPTHNLDRV--LTGREHGGEVRRK------ 162
Query: 244 RAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY 303
+ P+ + ++ + ++R GH ++VYC +FDR+GRY+ITG+DD L+KIWS
Sbjct: 163 ------LLVPTDLYRRTKLLRRTVGHLSSVYCVLFDRTGRYIITGADDLLIKIWSAADGR 216
Query: 304 CLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFS 363
LA+ RG +ITD D I+RVW + PI+VL HT +T++ F
Sbjct: 217 LLATLRGASSEITDIAINLDNTMLAAGSLDHILRVWDMQTTSPIAVLSAHTGMITSVNFC 276
Query: 364 PRPGS-VYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 422
P P S + L+++S DG+ W + + P+P+ + P + Q+
Sbjct: 277 PSPRSDLKYLVTTSTDGSIAFWQYSTPRGQKITFAPKPTQY--HEKLRPGQA------QM 328
Query: 423 FCCAFNANGTVFVTGSSDTLARVWNACK--PN--------TD--DSDQPNHE-IDVLSGH 469
C F+ G GS+D RV+ + P TD DS Q +H + +SG
Sbjct: 329 MCTTFSPGGIFLAAGSADHHVRVYMMGEDGPKRILETEAYTDAVDSVQWSHRGLRFISGS 388
Query: 470 ENDVNYV------QFSGCAVASRFSLADSSKEDSTPKFKNS---WFCHDN-IVTCSRDGS 519
++ ++ Q+ + LA + + + K + W D ++T D +
Sbjct: 389 KDGTAHIWTFESQQWKSSKLCMTERLASCPEPEEGKRLKVTMVAWDASDRYVITAVNDFT 448
Query: 520 AIIWIPRSRRSH 531
IW +S + H
Sbjct: 449 IKIWDSKSAKLH 460
|
|
| DICTYBASE|DDB_G0285837 DDB_G0285837 "BRWD group protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 1.8e-59, Sum P(7) = 1.8e-59
Identities = 77/241 (31%), Positives = 118/241 (48%)
Query: 509 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTPR 568
D IV+ S DG+ IIW H +W H+ + +
Sbjct: 606 DAIVSGSYDGTVIIW------RHSGGPKWD---HVIFNIKNTQRPNQANSHPKKVARSKA 656
Query: 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628
++WS D+RF++ + I VWN+ DGS + HT YV HPF+ R+ MS+
Sbjct: 657 TFKNVIWSHDDRFIITTDYNM-IRVWNSLDGSFHLEMAEHTSEVYVTSCHPFDSRLIMSS 715
Query: 629 GYDGKTIVWDIWEGIPIRIYEISR--FR--LVDGKFSPDGASIILSDDVGQLYILNTGQG 684
GYD + I+W I G I+ + + F+ ++DG FSPDG I+++ G+ ++ G G
Sbjct: 716 GYDSQVILWSIETGEIIKKFVLQEPGFQCQILDGCFSPDGQKFIVTNSTGKWFMFELGLG 775
Query: 685 ESQKDAKY----DQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEP 740
+ K +Q+FL DY PL++D GNVLD+ TQ PH + L + +PYP+
Sbjct: 776 SDINNLKKLVPNEQYFLTDYHPLIRDANGNVLDELTQTPPHLMP-RAMLVNYQGLPYPDH 834
Query: 741 Y 741
Y
Sbjct: 835 Y 835
|
|
| MGI|MGI:1890651 Brwd1 "bromodomain and WD repeat domain containing 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 370 (135.3 bits), Expect = 6.7e-57, Sum P(4) = 6.7e-57
Identities = 121/442 (27%), Positives = 201/442 (45%)
Query: 333 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 392
DC++++W +G +S LRGH+A ++ +A + + + S D R+W R +
Sbjct: 207 DCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYENTLI---AAGSCDKIIRVWCLRTC--A 261
Query: 393 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV-FVTGSSDTLARVWNACKP 451
P + + ++ +P + GPQ + + + A+GTV F ++L + +P
Sbjct: 262 PVAVLQGHTGSITSLQFSPMAK-GPQRYMV---STGADGTVCFWQWDLESLKF---SPRP 314
Query: 452 NTDDSDQPNHEIDVLSGHENDVNYVQFSGCA--VASRFSLA-DSSK-----EDSTPKFKN 503
+++P + +L + +G V + L D+ + E T K +
Sbjct: 315 -LKFTEKPRPGVQMLCSSFSVGGMFLATGSTDHVIRMYFLGFDAPEKIAELESHTDKVDS 373
Query: 504 SWFCH--DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXX 561
FC+ D ++ SRDG+A IW R+ Q +
Sbjct: 374 IQFCNNGDRFLSGSRDGTARIW------------RFEQLEWRSILLDMSARISGDTSSEE 421
Query: 562 XILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 621
P+ V MI W+ D+ V+ A+ D + VW++ G L+H+L GH + +VL+ HPF+
Sbjct: 422 ERFMKPK-VTMIAWNQDDSTVVTAVNDHVLKVWSSYTGQLLHNLLGHADEVFVLETHPFD 480
Query: 622 PRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG---------KFSPDGASIILSDD 672
RI +SAG+DG +WDI +GI ++ Y F +++G KFS DG +D
Sbjct: 481 SRIMLSAGHDGSIFIWDITKGIKMKHY----FNMIEGQGHGAVFDCKFSQDGQHFACTDS 536
Query: 673 VGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDP--LC 730
G L I G + + FF DYRPL++D+ VLD++TQ APH L P L
Sbjct: 537 HGHLLIFGFGCSKPYEKIPDQMFFHTDYRPLIRDSNNYVLDEQTQQAPH---LMPPPFLV 593
Query: 731 DSAMIPYPEPYQTMYQQRRLGA 752
D P+P +Q + R A
Sbjct: 594 DVDGNPHPTKFQRLVPGRENSA 615
|
|
| RGD|1309030 Brwd1 "bromodomain and WD repeat domain containing 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 370 (135.3 bits), Expect = 2.7e-55, Sum P(5) = 2.7e-55
Identities = 120/442 (27%), Positives = 197/442 (44%)
Query: 333 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 392
DC++++W +G +S LRGH+A ++ +A + + + S D R+W R +
Sbjct: 207 DCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYENTLI---AAGSCDKIIRVWCLRTC--A 261
Query: 393 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV-FVTGSSDTLA------RV 445
P + + ++ +P + GPQ + + + A+GTV F ++L +
Sbjct: 262 PVAVLQGHTGSITSLQFSPMAK-GPQRYMV---STGADGTVCFWQWDLESLKFSPRPLKF 317
Query: 446 WNACKPNTDD--SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 503
+P S + + +G + V + F G + + E T K +
Sbjct: 318 TEKPRPGVQMLCSSFSVGGMFLATGSTDHVIRMYFLGFEAPEKIA----ELESHTDKVDS 373
Query: 504 SWFCH--DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXX 561
FC+ D ++ SRDG+A IW R+ Q +
Sbjct: 374 IQFCNNGDRFLSGSRDGTARIW------------RFEQLEWKSILLDMAARISGDTSAEE 421
Query: 562 XILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 621
P+ V MI W+ D+ V+ A+ D + VW++ G L+H+L GH + +VL+ HPF+
Sbjct: 422 ERFMKPK-VTMIAWNQDDSTVVTAVNDHVLKVWSSYTGQLLHNLLGHADEVFVLETHPFD 480
Query: 622 PRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG---------KFSPDGASIILSDD 672
RI +SAG+DG +WDI +GI ++ Y F +++G KFS DG +D
Sbjct: 481 SRIMLSAGHDGSIFIWDITKGIKMKHY----FNMIEGQGHGAVFDCKFSQDGQHFACTDS 536
Query: 673 VGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDP--LC 730
G L I G + + FF DYRPL++D+ VLD++TQ APH L P L
Sbjct: 537 HGHLLIFGFGCSKPYEKIPDQMFFHTDYRPLIRDSNNYVLDEQTQQAPH---LMPPPFLV 593
Query: 731 DSAMIPYPEPYQTMYQQRRLGA 752
D P+P +Q + R A
Sbjct: 594 DVDGNPHPTKFQRLVPGRENSA 615
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| UNIPROTKB|Q9NSI6 BRWD1 "Bromodomain and WD repeat-containing protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 363 (132.8 bits), Expect = 5.4e-55, Sum P(4) = 5.4e-55
Identities = 119/442 (26%), Positives = 195/442 (44%)
Query: 333 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 392
DC++++W +G +S LRGH+A ++ +A + + + S D R+W R +
Sbjct: 207 DCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYENTMI---AAGSCDKIIRVWCLRTC--A 261
Query: 393 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV-FVTGSSDTLA------RV 445
P + + ++ +P + G Q + + + A+GTV F ++L +
Sbjct: 262 PVAVLQGHTGSITSLQFSPMAK-GSQRYMV---STGADGTVCFWQWDLESLKFSPRPLKF 317
Query: 446 WNACKPNTDD--SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 503
+P S + + +G + V + F G + + E T K +
Sbjct: 318 TEKPRPGVQMLCSSFSVGGMFLATGSTDHVIRMYFLGFEAPEKIA----ELESHTDKVDS 373
Query: 504 SWFCH--DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXX 561
FC+ D ++ SRDG+A IW R+ Q +
Sbjct: 374 IQFCNNGDRFLSGSRDGTARIW------------RFEQLEWRSILLDMATRISGDLSSEE 421
Query: 562 XILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 621
P+ V MI W+ ++ V+ A+ D + VWN+ G L+H+L GH + +VL+ HPF+
Sbjct: 422 ERFMKPK-VTMIAWNQNDSIVVTAVNDHVLKVWNSYTGQLLHNLMGHADEVFVLETHPFD 480
Query: 622 PRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG---------KFSPDGASIILSDD 672
RI +SAG+DG +WDI +G ++ Y F +++G KFS DG +D
Sbjct: 481 SRIMLSAGHDGSIFIWDITKGTKMKHY----FNMIEGQGHGAVFDCKFSQDGQHFACTDS 536
Query: 673 VGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDP--LC 730
G L I G + + FF DYRPL++D+ VLD++TQ APH L P L
Sbjct: 537 HGHLLIFGFGCSKPYEKIPDQMFFHTDYRPLIRDSNNYVLDEQTQQAPH---LMPPPFLV 593
Query: 731 DSAMIPYPEPYQTMYQQRRLGA 752
D P+P YQ + R A
Sbjct: 594 DVDGNPHPTKYQRLVPGRENSA 615
|
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| UNIPROTKB|Q8WWQ0 PHIP "PH-interacting protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 382 (139.5 bits), Expect = 4.8e-54, Sum P(5) = 4.8e-54
Identities = 137/488 (28%), Positives = 213/488 (43%)
Query: 333 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 392
DC++++W DG ++ LRGH A ++ +A + + + S D R+W R +
Sbjct: 204 DCLVKIWATDDGRLLATLRGHAAEISDMAVNYENTMI---AAGSCDKMIRVWCLRTC--A 258
Query: 393 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV-FVTGSSDTL------ARV 445
P + S ++ +P S + + + A+GT+ F + TL A+
Sbjct: 259 PLAVLQGHSASITSLQFSPLCSGSKR----YLSSTGADGTICFWLWDAGTLKINPRPAKF 314
Query: 446 WNACKPNTDD--SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD--SSKEDSTPKF 501
+P S + + +G + + V F G + S + + K DS +F
Sbjct: 315 TERPRPGVQMICSSFSAGGMFLATGSTDHIIRVYFFGSGQPEKISELEFHTDKVDSI-QF 373
Query: 502 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXX 561
N+ + V+ SRDG+A IW + R W + +
Sbjct: 374 SNT---SNRFVSGSRDGTARIWQFKRRE-------WKS---ILLDMATRPAGQNLQGIED 420
Query: 562 XILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 621
I T V M+ W + V+ A+ + + VWN+ G L+H L GH + +VL+ HPF+
Sbjct: 421 KI--TKMKVTMVAWDRHDNTVITAVNNMTLKVWNSYTGQLIHVLMGHEDEVFVLEPHPFD 478
Query: 622 PRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG---------KFSPDGASIILSDD 672
PR+ SAG+DG IVWD+ G+ IR Y F +++G K SPDG +D
Sbjct: 479 PRVLFSAGHDGNVIVWDLARGVKIRSY----FNMIEGQGHGAVFDCKCSPDGQHFACTDS 534
Query: 673 VGQLYILNTGQGESQKDAKYDQ-FFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDP--L 729
G L I G S+ D DQ FF DYRPL++D VLD++TQ APH L P L
Sbjct: 535 HGHLLIFGFGSS-SKYDKIADQMFFHSDYRPLIRDANNFVLDEQTQQAPH---LMPPPFL 590
Query: 730 CDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMID 789
D P+P YQ + R + P + G + L Q Q ++ LD MI
Sbjct: 591 VDVDGNPHPSRYQRLVPGRE-NCREEQLIPQMGVTSSGLNQVLSQQAN-QEISPLDSMIQ 648
Query: 790 PLPEFIDV 797
L + D+
Sbjct: 649 RLQQEQDL 656
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | AT5G49430 | transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repeat family protein; FUNCTIONS IN- nucleotide binding; INVOLVED IN- biological_process unknown; LOCATED IN- CUL4 RING ubiquitin ligase complex; EXPRESSED IN- 17 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- WD40 repeat-like (InterPro-IPR011046), WD40 repeat, region (InterPro-IPR017986), WD40/YVTN repeat-like (InterPro-IPR015943), WD40 repeat (InterPro-IPR001680), Bromodomain (InterPro-IPR001487); BEST Arabidopsis thaliana protein match is- nucleotide binding ( [...] (1677 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | AT1G65030 | transducin family protein / WD-40 repeat family protein; This gene is predicted to encode a pro [...] (345 aa) | • | 0.599 | |||||||
 | AT2G19430 | transducin family protein / WD-40 repeat family protein; This gene is predicted to encode a pro [...] (367 aa) | • | 0.538 | |||||||
 | AT1G61210 | WD-40 repeat family protein / katanin p80 subunit, putative; WD-40 repeat family protein / kata [...] (1180 aa) | • | • | 0.536 | ||||||
 | SPA2 | SPA2 (SPA1-RELATED 2); protein binding / signal transducer; Encodes a member of the SPA (suppre [...] (1036 aa) | • | 0.467 | |||||||
 | SCD1 | SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1); protein binding; Encodes soluble protein containing N- [...] (1187 aa) | • | • | 0.443 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1784 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-51 | |
| cd05529 | 128 | cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repe | 2e-45 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-39 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-38 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-35 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-35 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-24 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-22 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-21 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-20 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-16 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-10 | |
| smart00297 | 107 | smart00297, BROMO, bromo domain | 1e-09 | |
| pfam00439 | 84 | pfam00439, Bromodomain, Bromodomain | 1e-09 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-08 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-07 | |
| cd04369 | 99 | cd04369, Bromodomain, Bromodomain | 8e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 6e-04 | |
| cd05520 | 103 | cd05520, Bromo_polybromo_III, Bromodomain, polybro | 7e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.001 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.002 | |
| cd05519 | 103 | cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfam | 0.002 | |
| pfam05764 | 238 | pfam05764, YL1, YL1 nuclear protein | 0.002 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 0.002 | |
| cd05525 | 106 | cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-fa | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 7e-51
Identities = 97/379 (25%), Positives = 152/379 (40%), Gaps = 92/379 (24%)
Query: 262 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVS 321
+ ++GH V C F G+ + TGS D +K+W +ET L + +GH G + D+A S
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 322 SNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 381
++ +AS S+D IR+W L G + L GHT+ V+++AFSP G + L SSS D T
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD-GRI--LSSSSRDKTI 117
Query: 382 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ--IFCCAFNANGTVFVTGSS 439
++WD + + + H + AF+ +GT + S
Sbjct: 118 KVWDVETGKCLTTL----------------------RGHTDWVNSVAFSPDGTFVASSSQ 155
Query: 440 DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 499
D ++W+ + + L+GH +VN V FS D K
Sbjct: 156 DGTIKLWDL---------RTGKCVATLTGHTGEVNSVAFSP----------DGEK----- 191
Query: 500 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 559
+++ S DG+ +W + + T H
Sbjct: 192 -----------LLSSSSDGTIKLWDLSTGKCLG-----TLRGHEN--------------- 220
Query: 560 RQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 619
GVN + +S D + + D I VW+ G V +L+GHT S L P
Sbjct: 221 ---------GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP 271
Query: 620 FNPRIAMSAGYDGKTIVWD 638
R+A S DG +WD
Sbjct: 272 DGKRLA-SGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 2e-45
Identities = 57/129 (44%), Positives = 80/129 (62%), Gaps = 2/129 (1%)
Query: 1646 ETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKT 1705
L S WELFD WEQP I D+ R +L+S KL S +Y + +
Sbjct: 2 YNPLSSEWELFDPG--WEQPHIRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYP 59
Query: 1706 NFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSD 1765
++ NR PVP+ L+ I+SRLEN YYR LEA++HD+ ++LSNAE++ N++++ K KRLSD
Sbjct: 60 DYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNEPNSEIAKKAKRLSD 119
Query: 1766 LVTRTLSSL 1774
+ R LSSL
Sbjct: 120 WLLRILSSL 128
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 128 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 1e-39
Identities = 67/233 (28%), Positives = 106/233 (45%), Gaps = 38/233 (16%)
Query: 257 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 316
++ + ++ + GH + V F GR + + S D+ +K+W +ET CL + RGH +
Sbjct: 80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN 139
Query: 317 DLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 376
+A S + VAS+S D I++W L G ++ L GHT V ++AFSP +LLSSS
Sbjct: 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG---EKLLSSS 196
Query: 377 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ--IFCCAFNANGTVF 434
DGT ++WD + H+ + AF+ +G +
Sbjct: 197 SDGTIKLWDLS----------------------TGKCLGTLRGHENGVNSVAFSPDGYLL 234
Query: 435 VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVAS 485
+GS D RVW+ + LSGH N V + +S G +AS
Sbjct: 235 ASGSEDGTIRVWDLRTGE---------CVQTLSGHTNSVTSLAWSPDGKRLAS 278
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 4e-38
Identities = 80/372 (21%), Positives = 128/372 (34%), Gaps = 93/372 (25%)
Query: 304 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFS 363
+ +GH G +T +A S + L+A+ S D I+VW L G + L+GHT V +A S
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 364 PRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ-- 421
L S S D T R+WD + G H
Sbjct: 61 A---DGTYLASGSSDKTIRLWDLE---------TGECVRTLTG-------------HTSY 95
Query: 422 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 481
+ AF+ +G + + S D +VW+ + L GH + VN V FS
Sbjct: 96 VSSVAFSPDGRILSSSSRDKTIKVWDVETGK---------CLTTLRGHTDWVNSVAFSPD 146
Query: 482 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 541
F + + S+DG+ +W R+
Sbjct: 147 ---GTF-----------------------VASSSQDGTIKLWDLRT-------------- 166
Query: 542 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL 601
G + VN + +S D +L++ D I +W+ + G
Sbjct: 167 ---------------GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211
Query: 602 VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFS 661
+ +L GH + P + + S DG VWD+ G ++ + +S
Sbjct: 212 LGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS 270
Query: 662 PDGASII-LSDD 672
PDG + S D
Sbjct: 271 PDGKRLASGSAD 282
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 2e-35
Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 27/189 (14%)
Query: 261 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAV 320
+ + +RGH + V F G +V + S D +K+W + T C+A+ GH G++ +A
Sbjct: 126 KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF 185
Query: 321 SSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 380
S + + S+S+D I++W L G + LRGH V ++AFSP Y L S S+DGT
Sbjct: 186 SPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP---DGYLLASGSEDGT 242
Query: 381 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ--IFCCAFNANGTVFVTGS 438
R+WD R + + H + A++ +G +GS
Sbjct: 243 IRVWDLRTGECVQTL----------------------SGHTNSVTSLAWSPDGKRLASGS 280
Query: 439 SDTLARVWN 447
+D R+W+
Sbjct: 281 ADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 5e-35
Identities = 70/287 (24%), Positives = 121/287 (42%), Gaps = 56/287 (19%)
Query: 257 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 316
++ + ++ ++GH V G Y+ +GS D+ +++W +ET C+ + GH ++
Sbjct: 38 LETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS 97
Query: 317 DLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 376
+A S + +++S+S D I+VW + G ++ LRGHT V ++AFSP V SSS
Sbjct: 98 SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVA---SSS 154
Query: 377 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 436
DGT ++WD R + + G ++ AF+ +G ++
Sbjct: 155 QDGTIKLWDLRTGKCVATLT-------------------GHTG-EVNSVAFSPDGEKLLS 194
Query: 437 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS-------GCAVASRFSL 489
SSD ++W+ +T + L GHEN VN V FS + +
Sbjct: 195 SSSDGTIKLWD---LSTGK------CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245
Query: 490 ADSSKEDSTPKFKNSWFCHDN-------------IVTCSRDGSAIIW 523
D + H N + + S DG+ IW
Sbjct: 246 WDLRTGECVQTLS----GHTNSVTSLAWSPDGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-24
Identities = 70/340 (20%), Positives = 114/340 (33%), Gaps = 88/340 (25%)
Query: 346 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 405
L+GHT VT +AFSP L + S DGT ++WD + +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKL---LATGSGDGTIKVWDLETGELLRTLKGH------- 50
Query: 406 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 465
+ + A +A+GT +GSSD R+W+ + +
Sbjct: 51 -------------TGPVRDVAASADGTYLASGSSDKTIRLWDL---------ETGECVRT 88
Query: 466 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIP 525
L+GH + V+ V FS + + SRD + +W
Sbjct: 89 LTGHTSYVSSVAFSP---------------------DGRI-----LSSSSRDKTIKVW-- 120
Query: 526 RSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 585
G + VN + +S D FV ++
Sbjct: 121 ---------------------------DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153
Query: 586 IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 645
D I +W+ G V +LTGHT + P ++ S+ DG +WD+ G +
Sbjct: 154 SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLL-SSSSDGTIKLWDLSTGKCL 212
Query: 646 RIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 685
+ FSPDG + + G + + + GE
Sbjct: 213 GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 2e-22
Identities = 91/413 (22%), Positives = 152/413 (36%), Gaps = 88/413 (21%)
Query: 271 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC-RGHEGDITDLAVSSNNALVAS 329
+ + + D + + + S D VK+W + T L GH +T LA S + L+AS
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLAS 172
Query: 330 ASN-DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 388
S+ D I++W L G P+S L GHT V+++AFSP + S S DGT R+WD
Sbjct: 173 GSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPD--GGLLIASGSSDGTIRLWDLST 230
Query: 389 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 448
+ V +F+ +G++ +GSSD R+W
Sbjct: 231 GKLLRSTLSGHSDSVV--------------------SSFSPDGSLLASGSSDGTIRLW-- 268
Query: 449 CKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 508
D + + LSGH + V V FS
Sbjct: 269 ------DLRSSSSLLRTLSGHSSSVLSVAFSP--------------------------DG 296
Query: 509 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR 568
+ + S DG+ +W + + T H
Sbjct: 297 KLLASGSSDGTVRLW---DLETGKLLSSLTLKGHEGP----------------------- 330
Query: 569 GVNMIVWSLDNRFVLAAIM-DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS 627
V+ + +S D +++ D I +W+ G + +L GH+ + + P ++ S
Sbjct: 331 -VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVS-S 387
Query: 628 AGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 680
DG +WD+ G +R + R+ FSPDG S+ + + +
Sbjct: 388 GSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.6 bits (244), Expect = 4e-21
Identities = 93/382 (24%), Positives = 143/382 (37%), Gaps = 89/382 (23%)
Query: 261 QNIKRVRGHRNAVYCAIFDRSGRYVITGSD-DRLVKIWSMETAYCLASCRGHEGDITDLA 319
+ I+ + GH +V F G+ + +GS D +K+W + T L++ GH ++ LA
Sbjct: 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA 205
Query: 320 VSSNN-ALVASASNDCIIRVWRLPDGLPI-SVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 377
S + L+AS S+D IR+W L G + S L GH+ +V +FSP L S S
Sbjct: 206 FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSL---LASGSS 261
Query: 378 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 437
DGT R+WD R S R S + AF+ +G + +G
Sbjct: 262 DGTIRLWDLRSSSSLLRTLS-------------------GHSSSVLSVAFSPDGKLLASG 302
Query: 438 SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 497
SSD R+W+ L GHE V+ + FS
Sbjct: 303 SSDGTVRLWDLETGKL-------LSSLTLKGHEGPVSSLSFSPD---------------- 339
Query: 498 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 557
+ S DG+ +W R+ +
Sbjct: 340 ---------GSLLVSGGSDDGTIRLWDLRTGKP--------------------------- 363
Query: 558 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 617
+ L V + +S D R V + D + +W+ + GSL+ +L GHT LD
Sbjct: 364 ---LKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDF 420
Query: 618 HPFNPRIAMSAGYDGKTIVWDI 639
P +A S D +WD+
Sbjct: 421 SPDGKSLA-SGSSDNTIRLWDL 441
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 9e-20
Identities = 52/270 (19%), Positives = 90/270 (33%), Gaps = 65/270 (24%)
Query: 419 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 478
+ + C AF+ +G + TGS D +VW+ + + L GH V V
Sbjct: 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDL---------ETGELLRTLKGHTGPVRDVAA 59
Query: 479 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 538
S AD + + + S D + +W + T
Sbjct: 60 S----------ADGTY----------------LASGSSDKTIRLWDLETGECV-----RT 88
Query: 539 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 598
H V+ + +S D R + ++ D I VW+
Sbjct: 89 LTGHTS------------------------YVSSVAFSPDGRILSSSSRDKTIKVWDVET 124
Query: 599 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG 658
G + +L GHT+ + P +A S+ DG +WD+ G + +
Sbjct: 125 GKCLTTLRGHTDWVNSVAFSPDGTFVA-SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183
Query: 659 KFSPDGASIILSDDVGQLYILNTGQGESQK 688
FSPDG ++ S G + + + G+
Sbjct: 184 AFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.4 bits (207), Expect = 2e-16
Identities = 57/280 (20%), Positives = 110/280 (39%), Gaps = 30/280 (10%)
Query: 257 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVI-TGSDDRLVKIWSMETAYCLASCRGHEGDI 315
++ + + + GH + V F G +I +GS D +++W + T L S D
Sbjct: 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244
Query: 316 TDLAVSSNNALVASASNDCIIRVWRLP-DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 374
+ S + +L+AS S+D IR+W L + L GH+++V ++AFSP L S
Sbjct: 245 VVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK---LLAS 301
Query: 375 SSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVF 434
S DGT R+WD + + + V +F+ +G++
Sbjct: 302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPV------------------SSLSFSPDGSLL 343
Query: 435 VTG-SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 493
V+G S D R+W+ + + + + +S + S + L+ S
Sbjct: 344 VSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGS 403
Query: 494 KEDSTPKFKNSWFC------HDNIVTCSRDGSAIIWIPRS 527
+ + ++ + S D + +W ++
Sbjct: 404 LLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.0 bits (167), Expect = 1e-11
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 261 QNIKRVRGHRNAVYCAIFDRSG-RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLA 319
+ ++GH V F G V GSDD +++W + T L + GH ++ ++
Sbjct: 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVS 377
Query: 320 VSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG 379
S + +V+S S D +R+W L G + L GHT+ VT++ FSP S L S S D
Sbjct: 378 FSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS---LASGSSDN 434
Query: 380 TCRIWDARYSQFS 392
T R+WD + S S
Sbjct: 435 TIRLWDLKTSLKS 447
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.3 bits (155), Expect = 3e-10
Identities = 57/317 (17%), Positives = 99/317 (31%), Gaps = 59/317 (18%)
Query: 371 QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 430
+ + S S + + SD++ S I AF+ +
Sbjct: 17 KKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPD 76
Query: 431 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLA 490
G + ++GSSD ++W D D I L G + S LA
Sbjct: 77 GELLLSGSSDGTIKLW--------DLDNGEKLIKSLEGLHDS------------SVSKLA 116
Query: 491 DSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 550
SS + ++ +S DG+ +W +
Sbjct: 117 LSSPDGNSILLASSSL----------DGTVKLWDLST----------------------- 143
Query: 551 PPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWNAADGSLVHSLTGHT 609
G + + V + +S D + + +D I +W+ G + +L GHT
Sbjct: 144 -----PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT 198
Query: 610 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIIL 669
+ L P + S DG +WD+ G +R V FSPDG+ +
Sbjct: 199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLAS 258
Query: 670 SDDVGQLYILNTGQGES 686
G + + + S
Sbjct: 259 GSSDGTIRLWDLRSSSS 275
|
Length = 466 |
| >gnl|CDD|197636 smart00297, BROMO, bromo domain | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-09
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTL 1771
P+ L I+ +LEN Y +E D +M SNA +Y G ++++ K+L + L
Sbjct: 47 PMDLKTIKKKLENGKYSSVEEFVADFNLMFSNARTYNGPDSEVYKDAKKLEKFFEKKL 104
|
Length = 107 |
| >gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-09
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 1706 NFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDL 1756
++ P+ L I+ +L++ Y+ L D+ ++ SNA +Y G ++D+
Sbjct: 28 DYYEVIKEPMDLSTIRQKLKSGKYKSLAEFLKDVELIFSNAITYNGEDSDI 78
|
Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 84 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 6e-08
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 344 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 385
G + L+GHT VT++AFSP L S SDDGT R+WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSP---DGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-07
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 343 DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 385
G + L+GHT VT++AFSP L S SDDGT ++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSP---DGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|99922 cd04369, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 8e-07
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTL 1771
P+ L I+ +L+N Y+ LE + D+ ++ SNA++Y G + + K+L L + L
Sbjct: 42 PMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEKLL 99
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. Length = 99 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-06
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 304 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 339
L + +GH G +T +A S + L+AS S+D +RVW
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-06
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 304 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 339
L + +GH G +T +A S + +AS S+D I++W
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-06
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 259 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS 298
+ +K ++GH V F G+Y+ +GSDD +K+W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-06
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 260 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS 298
+ ++ ++GH V F G + +GSDD V++W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (115), Expect = 2e-05
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 257 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 316
++ + +K + GH + V F GR V +GS D V++W + T L + GH +T
Sbjct: 358 LRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVT 416
Query: 317 DLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 350
L S + +AS S+D IR+W L L
Sbjct: 417 SLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 6e-04
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 598 DGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638
G L+ +L GHT + P +A S DG +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLA-SGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|99951 cd05520, Bromo_polybromo_III, Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLV 1767
P+SL I+++L+N Y LE ++ D+ +M NA+ Y N+ + ++L L+
Sbjct: 46 PISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLM 99
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. Length = 103 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.001
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 599 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638
G L+ +L GHT + P +A S DG VWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLA-SGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.002
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 419 SHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ + AF+ +G + +GS D RVW+
Sbjct: 11 TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|99950 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESY 1749
P++LD I+ R+E Y+ LE D +M +NA +Y
Sbjct: 46 PIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTY 81
|
SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 103 |
| >gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 11/130 (8%)
Query: 807 QSDDNDSEYNVAEEYSTEEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQKAEV 866
+ +++D E+ + EE EE S S D ++D E+GE + R K+KK+
Sbjct: 35 EEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEP-ESDDEEEGEKELQREERLKKKKRVKTK 93
Query: 867 EIMTSSGRRVKRRILDESEGNAAFG----------NKRTRKSGNRQKSSRRKSSTSKSLR 916
+ ++ K+ AA T R+KSSR + +K
Sbjct: 94 AYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDSPRRKSSRSSTVQNKEAT 153
Query: 917 PQRAAARNAR 926
+R R R
Sbjct: 154 HERLKEREIR 163
|
The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 309 RGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPDG--------LPISVLRGHTAAVTA 359
+GH I DL + + ++AS S D IRVW +P P +L+GH ++
Sbjct: 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI 130
Query: 360 IAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA---GRNMAPSSSAG 416
I ++P + Y + SS D IWD + + +I +P+ ++ N+ + G
Sbjct: 131 IDWNPM--NYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVG 188
Query: 417 PQSHQI 422
H I
Sbjct: 189 KHMHII 194
|
Length = 568 |
| >gnl|CDD|99955 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 18/70 (25%), Positives = 32/70 (45%)
Query: 1697 KLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDL 1756
L + ++ R P+ L I+ ++ YY+ EA D+ + NAE Y+GR + +
Sbjct: 31 NLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGRKSPI 90
Query: 1757 STKIKRLSDL 1766
+ RL
Sbjct: 91 GRDVCRLRKA 100
|
ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 106 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1784 | |||
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.98 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.98 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.95 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.94 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.94 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.94 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.94 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.93 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.93 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.92 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.92 | |
| PTZ00421 | 493 | coronin; Provisional | 99.92 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.92 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.92 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.92 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.92 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.92 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.91 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.91 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.91 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.91 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| PTZ00420 | 568 | coronin; Provisional | 99.9 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.9 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.9 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.9 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.9 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.9 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.9 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.88 | |
| PTZ00421 | 493 | coronin; Provisional | 99.88 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.88 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.88 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| PTZ00420 | 568 | coronin; Provisional | 99.87 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.87 | |
| PF06507 | 83 | Auxin_resp: Auxin response factor; InterPro: IPR01 | 99.87 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.87 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.86 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.86 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.85 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.85 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.85 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.84 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.84 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.84 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.84 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.84 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.83 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.83 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.83 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.82 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.82 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.81 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.81 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.8 | |
| cd05529 | 128 | Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like | 99.8 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.79 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.79 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.79 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.79 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.78 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.78 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.77 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.77 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.77 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.77 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.76 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.76 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.76 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.76 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.75 | |
| cd05497 | 107 | Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily | 99.75 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.74 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.73 | |
| cd05495 | 108 | Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb | 99.73 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.72 | |
| cd05496 | 119 | Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub | 99.71 | |
| cd05504 | 115 | Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li | 99.71 | |
| cd05505 | 97 | Bromo_WSTF_like Bromodomain; Williams syndrome tra | 99.71 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.71 | |
| cd05507 | 104 | Bromo_brd8_like Bromodomain, brd8_like subgroup. I | 99.71 | |
| cd05508 | 99 | Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC | 99.71 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.71 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.71 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.7 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.7 | |
| cd05510 | 112 | Bromo_SPT7_like Bromodomain; SPT7_like subfamily. | 99.7 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.7 | |
| cd05509 | 101 | Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. | 99.69 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.69 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.68 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.68 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.68 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.68 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.67 | |
| cd05502 | 109 | Bromo_tif1_like Bromodomain; tif1_like subfamily. | 99.67 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.67 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.66 | |
| cd05500 | 103 | Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami | 99.66 | |
| cd05511 | 112 | Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum | 99.66 | |
| cd05503 | 97 | Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s | 99.66 | |
| cd05516 | 107 | Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s | 99.66 | |
| cd05513 | 98 | Bromo_brd7_like Bromodomain, brd7_like subgroup. T | 99.65 | |
| cd05501 | 102 | Bromo_SP100C_like Bromodomain, SP100C_like subfami | 99.65 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.64 | |
| cd05520 | 103 | Bromo_polybromo_III Bromodomain, polybromo repeat | 99.64 | |
| cd05515 | 105 | Bromo_polybromo_V Bromodomain, polybromo repeat V. | 99.64 | |
| cd05528 | 112 | Bromo_AAA Bromodomain; sub-family co-occurring wit | 99.64 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.64 | |
| cd05512 | 98 | Bromo_brd1_like Bromodomain; brd1_like subfamily. | 99.63 | |
| cd05499 | 102 | Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam | 99.63 | |
| cd05517 | 103 | Bromo_polybromo_II Bromodomain, polybromo repeat I | 99.63 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.62 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.61 | |
| smart00297 | 107 | BROMO bromo domain. | 99.61 | |
| cd05518 | 103 | Bromo_polybromo_IV Bromodomain, polybromo repeat I | 99.61 | |
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 99.6 | |
| cd05524 | 113 | Bromo_polybromo_I Bromodomain, polybromo repeat I. | 99.6 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.6 | |
| cd05519 | 103 | Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci | 99.6 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.59 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.59 | |
| cd05498 | 102 | Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil | 99.59 | |
| cd05506 | 99 | Bromo_plant1 Bromodomain, uncharacterized subfamil | 99.58 | |
| cd05525 | 106 | Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 | 99.58 | |
| cd05521 | 106 | Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik | 99.57 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.57 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.57 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.56 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.56 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.55 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.54 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.54 | |
| cd05522 | 104 | Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l | 99.53 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.52 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.5 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.5 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.5 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.49 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.48 | |
| PF00439 | 84 | Bromodomain: Bromodomain; InterPro: IPR001487 Brom | 99.48 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.47 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.47 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.47 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.46 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.46 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.45 | |
| cd05492 | 109 | Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | 99.45 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.44 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.43 | |
| cd04369 | 99 | Bromodomain Bromodomain. Bromodomains are found in | 99.42 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.42 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.41 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.36 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.34 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.34 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.34 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.32 | |
| cd05526 | 110 | Bromo_polybromo_VI Bromodomain, polybromo repeat V | 99.32 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.31 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.31 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.31 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.31 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.3 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.3 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.29 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.29 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.28 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.28 | |
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 99.26 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.25 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.24 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.24 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.24 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.22 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.21 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.2 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.2 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.16 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.14 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.13 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.13 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.13 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.11 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.1 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.08 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.06 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.06 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.06 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.05 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.04 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.03 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.02 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.01 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.0 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.0 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 98.99 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.99 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.99 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.99 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.96 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.96 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.95 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.93 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.92 | |
| KOG1472 | 720 | consensus Histone acetyltransferase SAGA/ADA, cata | 98.91 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.9 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.89 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.87 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.86 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.86 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.86 | |
| cd05491 | 119 | Bromo_TBP7_like Bromodomain; TBP7_like subfamily, | 98.84 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.84 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.83 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.81 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.78 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.72 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.71 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.7 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.69 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.69 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.68 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.64 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.57 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.52 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.5 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.48 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.43 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.41 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.38 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.38 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.38 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.31 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.29 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.26 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.26 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.25 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.25 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.23 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.22 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.22 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.21 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.2 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.2 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 98.15 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.13 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.12 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.06 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.06 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.06 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.05 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.05 | |
| cd05494 | 114 | Bromodomain_1 Bromodomain; uncharacterized subfami | 98.04 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.04 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.01 | |
| KOG1827 | 629 | consensus Chromatin remodeling complex RSC, subuni | 98.0 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.99 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.97 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.92 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.92 | |
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 97.89 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.88 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.87 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.86 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.84 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 97.82 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 97.81 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.77 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.76 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.76 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.76 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.73 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.7 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.68 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.68 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.58 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.58 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.55 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.51 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.49 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.49 | |
| KOG1472 | 720 | consensus Histone acetyltransferase SAGA/ADA, cata | 97.47 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.46 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.44 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.4 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.36 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.35 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.34 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.34 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.32 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 97.09 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.04 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.0 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.96 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.91 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.89 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.88 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.88 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.76 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.74 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.72 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.69 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.66 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.65 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.64 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.6 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.44 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.36 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.28 | |
| KOG1828 | 418 | consensus IRF-2-binding protein CELTIX-1, contains | 96.27 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.26 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.26 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 96.24 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.23 | |
| KOG1828 | 418 | consensus IRF-2-binding protein CELTIX-1, contains | 96.2 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.17 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.94 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.93 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 95.84 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.73 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 95.63 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.54 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.53 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.46 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.44 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.36 | |
| PRK10115 | 686 | protease 2; Provisional | 95.34 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.14 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.14 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.13 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.04 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 94.83 | |
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 94.67 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 94.55 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.54 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 94.39 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.37 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.34 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.23 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 93.71 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.66 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 93.46 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 93.4 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 93.3 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 93.27 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 93.26 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.13 | |
| PRK10115 | 686 | protease 2; Provisional | 92.94 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 92.79 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 92.72 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 92.52 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 92.29 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 92.25 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 92.07 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 91.76 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 91.52 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 91.27 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 91.2 | |
| cd05493 | 131 | Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL- | 90.96 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 89.97 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 89.87 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 89.71 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 89.5 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 89.4 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 89.35 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 89.18 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 89.07 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 88.53 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 88.36 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 88.24 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 87.84 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 87.3 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 87.11 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 86.97 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 86.82 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 86.53 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 86.04 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 85.81 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 85.5 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 85.32 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 85.22 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 84.51 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 83.76 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 83.74 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 83.53 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 83.29 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 83.09 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 81.16 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 80.63 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 80.03 |
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-141 Score=1266.00 Aligned_cols=1094 Identities=53% Similarity=0.830 Sum_probs=837.9
Q ss_pred cchhHHHHHHHHHhccCCchhhHHHHHHHHHhhcCCchhhHHHHhhcCCCCCCCCCcCcccchhHhhhhhhCCCCChHHH
Q 000251 74 VDLREVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPHIEKDHL 153 (1784)
Q Consensus 74 ~~~~ElyflI~~fL~~gp~~~aa~~L~~el~~~~~Lp~r~~~WLe~lsl~~~~~~~~G~~~~~~~~~L~~~~~~i~~~~L 153 (1784)
+|++|+||||.|||+.|||++++++|+.|++++++||.|++.| .+..+....+.|+..|+||.++||
T Consensus 13 l~lsevyflil~~lS~gPcert~~vl~~elee~~ll~pr~~~W-------------~sn~~~dd~eslvls~~hI~kdhl 79 (1113)
T KOG0644|consen 13 LDLSEVYFLILHYLSAGPCERTAQVLRQELEEYSLLPPRYHDW-------------ESNSGNDDGESLVLSYKHIAKDHL 79 (1113)
T ss_pred cchhhHHHHHHhhcccCchhhcchhhhhhhhhhhccCcccccc-------------ccCCCCcccceeeccccccchHHH
Confidence 8899999999999999999999999999999999999999999 444455666777777999999999
Q ss_pred HHHHHHHHHccCCCCccccCCCCCC---ccchhhhhccCcccccccccccCCCCCCCCCCCcCCCCcccccccccccccc
Q 000251 154 VKLLKQLIINTSSPSRAMIGGDAPN---AADVPTLLGRGSFSLLSYDRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREI 230 (1784)
Q Consensus 154 l~ll~r~il~~~~~~~~~~~~~~P~---~~~v~tLL~~~~~Sll~s~~~~~~~~~~~p~~~~r~p~~~~~~V~~l~~r~~ 230 (1784)
|++|++|+.. ...+.+|. .+.|++|||+|+|+|++..++.... ..+..+++||+||+++|+++.++..
T Consensus 80 l~i~kqlv~~-------~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~--~~~~s~~~~~h~~~~~~~~~sl~s~ 150 (1113)
T KOG0644|consen 80 LQILKQLVPM-------LDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHT--VWKGSAFRWPHMHADQVRGVSLRSI 150 (1113)
T ss_pred HHHHHHhccC-------cCCCCCcceeeeecccchhcchhHHHHhhhhhcccc--cccccccccccccCcccccceeccC
Confidence 9999999752 22445666 7899999999999999998877665 4456789999999999999999999
Q ss_pred CCccccccCCcchhhhcccccccccccccceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEec
Q 000251 231 GGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG 310 (1784)
Q Consensus 231 Gg~~~~~~~~~~l~s~~~~~~~~~~~~~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~g 310 (1784)
||+|..|++.+++.++|+.++.|..++++++.++.|.||.++|+|++|+..|++++||++|..|+||..+++.++.+++|
T Consensus 151 ~~~~~~h~~a~~i~~at~~~akPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG 230 (1113)
T KOG0644|consen 151 GGGFEIHHRAPSIGCATFSIAKPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG 230 (1113)
T ss_pred CcchhhhhcCcccccceeeecCcHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCc
Q 000251 311 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 390 (1784)
Q Consensus 311 H~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~ 390 (1784)
|.+.|+.++.+.++.++|+++.|..|++|.+.+|.++.++.+|++.|++|+|+|- .+.+.||++++||.+
T Consensus 231 hs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~-------~sss~dgt~~~wd~r--- 300 (1113)
T KOG0644|consen 231 HSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR-------ASSSDDGTCRIWDAR--- 300 (1113)
T ss_pred CccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc-------ccCCCCCceEecccc---
Confidence 9999999999999999999999999999999999999999999999999999994 367899999999998
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCC
Q 000251 391 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 470 (1784)
Q Consensus 391 ~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~ 470 (1784)
+...++.+.+.... ....+.++.|..++.-+++|+.|+....|.+.. +..+.
T Consensus 301 ~~~~~y~prp~~~~-------------~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~---------------l~~~~ 352 (1113)
T KOG0644|consen 301 LEPRIYVPRPLKFT-------------EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQ---------------LAWRS 352 (1113)
T ss_pred ccccccCCCCCCcc-------------cccceeeeeccccccccccccCCcccccchhhH---------------hhhhc
Confidence 34444444443221 234466666777777777777777666665521 11111
Q ss_pred CCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCC
Q 000251 471 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 550 (1784)
Q Consensus 471 ~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~ 550 (1784)
..+ .+++++.|
T Consensus 353 ~~l------------------------------------if~t~ssd--------------------------------- 363 (1113)
T KOG0644|consen 353 NLL------------------------------------IFVTRSSD--------------------------------- 363 (1113)
T ss_pred cce------------------------------------EEEecccc---------------------------------
Confidence 110 11111111
Q ss_pred CCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeC
Q 000251 551 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY 630 (1784)
Q Consensus 551 ~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~ 630 (1784)
-..+.+++-.+..+++|++.+|.+++.+.+|...++.+.+||++.++..+++.
T Consensus 364 ---------------------------~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~ 416 (1113)
T KOG0644|consen 364 ---------------------------LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGY 416 (1113)
T ss_pred ---------------------------ccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccC
Confidence 01355666678889999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccccceeecCCCcceEEccCCc
Q 000251 631 DGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGN 710 (1784)
Q Consensus 631 DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~~~~~~~~~~fs~D~r~Lv~d~~g~ 710 (1784)
||.+.|||+..|.+++.+..+++.+.+.+||+||+.++..++.|+++|+.++.++.++.+++++||..||++|+.+.+|+
T Consensus 417 dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak~dqffl~dyrplirdTn~~ 496 (1113)
T KOG0644|consen 417 DGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAKYDQFFLGDYRPLIRDTNGY 496 (1113)
T ss_pred CCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccccccccceEeecCcccccccccch
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccCcCCCCCcccCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeecCCCcccccCC
Q 000251 711 VLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDP 790 (1784)
Q Consensus 711 vld~~tql~phl~~l~~~L~D~~~~p~p~~~Q~l~~~rr~~v~~iAfSPDG~~LAvg~d~s~~~~v~lw~l~~~~~li~p 790 (1784)
|+|++||+.|| +.++++|||.+++|||.++|.+++++++++. +.++.|
T Consensus 497 vldqeTq~~ph-~~~p~~l~ds~~iphpe~yqtl~q~rr~sa~-------------------------------dh~mp~ 544 (1113)
T KOG0644|consen 497 VLDQETQLAPH-RNPPDFLCDSDMIPHPEPYQTLFQGRRLSAL-------------------------------DHLMPP 544 (1113)
T ss_pred hhhhHhhhccc-cCCCCceeccCCCcCCchhhhcccccccchh-------------------------------hhcCCc
Confidence 99999999999 6779999999999999999999999875544 122233
Q ss_pred CccccceeeeCCCCCcccCCCCCcccccccCCccccCCCCCCCCCCCCCCCCCccCCCCCCcchhHHHHHHhhhhhhccc
Q 000251 791 LPEFIDVMDWEPENEVQSDDNDSEYNVAEEYSTEEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQKAEVEIMT 870 (1784)
Q Consensus 791 lp~~i~~~~wsPDg~~ls~~~~s~~~~~e~~~s~e~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (1784)
+ +++..|.|.|+..++++.++++|+...++ +
T Consensus 545 l-~fia~~~~E~e~~Vls~~nds~~~~~~es------------~------------------------------------ 575 (1113)
T KOG0644|consen 545 L-EFIATMDWEPEEQVLSDQNDSEYNRSPES------------L------------------------------------ 575 (1113)
T ss_pred c-cchhhhccccchhhhhhcccccccCCccc------------c------------------------------------
Confidence 3 78999999999999999999987542220 0
Q ss_pred cccccccccccccccCcccccCcccccccccccccccccCCCCCCChhHHHHHHHhHHhhhhcCcCCCCCCCCCCCCCCC
Q 000251 871 SSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAARNARSFFSKITGASTDGEDVDGSEGELS 950 (1784)
Q Consensus 871 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1784)
.+.++. ...-++.++.+-+.+.+++|++++|+++|+|+++|||+..|++|++++-+.+. +
T Consensus 576 -----------seldg~-isq~krt~n~r~g~k~s~~~hg~s~ss~~~R~~~Rn~~~~isk~sg~~~~~~s--------g 635 (1113)
T KOG0644|consen 576 -----------SELDGM-ISQLKRTQNQRMGAKQSKRKHGLSKSSRPPRAAARNASSDISKISGISLDRKS--------G 635 (1113)
T ss_pred -----------hhhhhh-hhhhhhhhccccccchhhccCCCCccccCCcccccccchhhccCCCccccccc--------c
Confidence 222333 33444555667788889999999999999999999999999999888776543 2
Q ss_pred CCcccccccccccccccccchHHhhhcccCcccccccccccCCCCCcccccccCcceEEEEeeccccCcccccccccccc
Q 000251 951 ESESDLQDSYIESEESGRSLLNEQRKHSKGKGISLDDSEDVTKLDTPESHVNAGIRRLVLKLPVRDSNKHELQERTSDKC 1030 (1784)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1784)
+.+...|+.... +.+..+++.|...-| .++++.
T Consensus 636 ~~e~~~q~~~~~------------------------------p~eq~~~~~~~~~wR--~e~~vc--------------- 668 (1113)
T KOG0644|consen 636 QVEGVTQMHQNA------------------------------PSEQIATLRTLQAWR--REVVVC--------------- 668 (1113)
T ss_pred CCccchhhccCC------------------------------CHHHHhhhhHHHHhh--cccCcc---------------
Confidence 222222222111 111111111000000 000000
Q ss_pred cccccccccCcccccccccCCCCcccccCCCCCCCCcccccccccCCCccccccccccccCcccCCceeecceecccccc
Q 000251 1031 NQLVSVIGTSSEAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWGGVRARSSKR 1110 (1784)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1110 (1784)
T Consensus 669 -------------------------------------------------------------------------------- 668 (1113)
T KOG0644|consen 669 -------------------------------------------------------------------------------- 668 (1113)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCcccCCCCCCcccCccccccccccCCCCCCCCCCCCCccccccccCCCCCCCcccccccccCCCCCcccCCCcc
Q 000251 1111 LKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDISCGEEITNCGDNTDEVPLKNVKNLSGENNDVYSGDASC 1190 (1784)
Q Consensus 1111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1190 (1784)
....+++|... +.. .. ++. ++++ . ++
T Consensus 669 -----e~legt~pe~e-------------------d~~-~~----~dt------------dev~------r-----ng-- 694 (1113)
T KOG0644|consen 669 -----EELEGTFPELE-------------------DEA-MA----VDT------------DEVE------R-----NG-- 694 (1113)
T ss_pred -----ccccccCcccc-------------------ccc-cc----ccc------------chhh------h-----cC--
Confidence 00000000000 000 00 000 0000 0 00
Q ss_pred cccccCCcccccCCCCccccCCCCCCCCCCCCCCCCCCCCcccccccCCceeeeeeeccccccCccccCCCCCcccccCC
Q 000251 1191 KEQQSGFSELNYYDESKCVNTTDEDTTPYPNHLQNGTIQPSELKEILTPVSTKLRIRSKRILRDADVENQNNGCDALHGS 1270 (1784)
Q Consensus 1191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1270 (1784)
-.++ -..|.+-+-+..+-...++...+ + |.+++....+.|+ .
T Consensus 695 ----~kng----------RKrk~~l~~~~Snksd~vtlV~~--d---------~~~~~~~~s~aP~-------------~ 736 (1113)
T KOG0644|consen 695 ----YKNG----------RKRKLELRHPLSNKSDSVTLVSQ--D---------LADQSTCVSRAPN-------------G 736 (1113)
T ss_pred ----CCcc----------cccchhccCccccccccchhhhh--h---------hhcccceeeeCCc-------------c
Confidence 0000 00000111111111111111100 0 0111121111111 1
Q ss_pred CCCCCCCCCCcccccCCCCCccCCCCCCCcccccccccccCCCCCCCCCCccCCCCCCCCCCCccchhhhhhhccccccc
Q 000251 1271 SLDIKPNSLPEVLESDGTNRTSSDRGADGSQRLNAQIDSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRSKTNRD 1350 (1784)
Q Consensus 1271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1350 (1784)
.|+ .+-++|- .++.+ ...|..+. .....++--.+-||+.++..
T Consensus 737 ~ld---------------------~lNDgfs-------------D~kiD-~t~D~se~--~gs~~Eis~Rndrr~eS~~~ 779 (1113)
T KOG0644|consen 737 GLD---------------------SLNDGFS-------------DVKID-LTLDCSED--SGSGEEISLRNDRRSESNPE 779 (1113)
T ss_pred ccc---------------------ccccccc-------------ccccc-chhhhhhc--CCcccceeeecchhhccCcc
Confidence 110 0001110 11111 33333333 33444455556667766655
Q ss_pred CCCCCCCCCCCCCccccCCCCCCCCCCCCCcccccccccee-eccCCCccccccccccCCCCcccccCCCcCCCCCCCCc
Q 000251 1351 RTNSEGDGGGVGESTLNANNNNFHESATDGSRRTRSMGLKT-TTCDPDNVSSNLRLEQHNQPEDMYSGHNRSTSRCQLPH 1429 (1784)
Q Consensus 1351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1429 (1784)
.....+.+ + .+.++.+++.. +.++. ..+.+..+..+.|+.
T Consensus 780 esds~SSa----------~-----------sv~l~dgsi~~~tsrrg------------------Ri~k~~~st~a~Lt~ 820 (1113)
T KOG0644|consen 780 ESDSLSSA----------Y-----------SVWLADGSINLQTSRRG------------------RITKFCSSTEAELTT 820 (1113)
T ss_pred cccchhhh----------h-----------heecccCCccccccccc------------------cccccCccchhhhhh
Confidence 53322211 1 23344444443 22222 234555566666776
Q ss_pred --ccccCCCcccccccccccccccccccCCCCcccccccccccccccceecccCCCCCCCCCCCCEEEEecccchhhhhh
Q 000251 1430 --EEWGSSSKMTVGLRSTRNRRTSYLFCDSSPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINY 1507 (1784)
Q Consensus 1430 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~~~~~~~~~~YvPq~Gd~VvYf~QGH~e~~~~ 1507 (1784)
++|..+.+. +.+.|++. +....+....++++++.+.+||++++||+++||||||||||+||||||+|||++
T Consensus 821 e~~~~p~~~~~-----~s~s~s~~--~~~p~~~~~~~~~~~~~~~sWltls~hee~~ryipQmgDEViyfrQghqeyl~~ 893 (1113)
T KOG0644|consen 821 ELSSPPCSQDK-----GSGSKSHK--RSTPAPLENMKPQQLFEKPSWLTLSIHEEGCRYIPQMGDEVIYFRQGHQEYLEA 893 (1113)
T ss_pred cccCCCccccc-----cccccCcc--cCCCccccccchhhhcCCceeEEeehhhcCCcccccccceeehhhhhhHHHHhh
Confidence 568877777 55666665 444445566666799999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccccCC-CCCceeeEEEEeeeEEecCCCCceEEEEEeeeeCCCCCCCCceEEEEeCCCCCCCceEeehhhHH
Q 000251 1508 SGSREVGPWITVKG-NIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLVERTRFD 1586 (1784)
Q Consensus 1508 ~~~~~~~p~~~~~~-~l~~~~~c~V~~i~y~~~~~~~~~~~~~~L~~~~~~~~~~~~~f~v~~~~~~~~~dFlV~~~~y~ 1586 (1784)
+...+. +|..+.+ ++-+++.|+|+.|.|...|+++++||+|+|+++||.+....++|+++|+++.++|||||++++|+
T Consensus 894 ~~~n~~-~~~~~~p~~~~~v~~~kv~kl~~~~y~~~~~s~c~m~l~~idp~s~~~~k~F~ltlpdlv~fpDFlV~rsrYd 972 (1113)
T KOG0644|consen 894 VRLNNI-ELNNKEPWNKMAVEICKVEKLVYITYPGSGDSCCKMKLAVIDPASKLMDKSFKLTLPDLVTFPDFLVERSRYD 972 (1113)
T ss_pred hhhccc-cccccCcccccchhhheeeeeeeeeccCCCcchheeeeeeecchhhhhhccceeecccccCcchhhhhhhhHH
Confidence 887765 5543333 68899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcCceeEEeecCCCCCCCcEEEEEEEEecCCCCCCCCCCCceeEEEEcCCCCcccccCcCcccCCCCCcCCCC
Q 000251 1587 AAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPR 1666 (1784)
Q Consensus 1587 ~a~~~~w~~g~rf~m~~e~e~~~~~~w~~G~I~~~~~~~p~~P~S~W~~l~V~Wd~~~~~~~rvSPWEiep~~~~~~~p~ 1666 (1784)
+|++|||++|+|||+||.++...+|+||+|+|.++++.+|+||+|||+||.|+||++ |.+.|||||++|++..
T Consensus 973 ~AiQrnW~~~d~crvwwrda~~e~g~WWeG~ils~~pksp~fpdSpwery~v~~~~~--e~~~~spwe~~~i~de----- 1045 (1113)
T KOG0644|consen 973 AAIQRNWTCRDKCRVWWRDAGEEDGAWWEGRILSVKPKSPDFPDSPWERYIVRYDNT--ETELHSPWEMEPIPDE----- 1045 (1113)
T ss_pred HHHhhccccccceeEEEccCCCcCCceeeeeeeeccCCCCCCCCCcceeEEEEecCC--cccccCccccCCCccc-----
Confidence 999999999999999999999999999999999999999999999999999999986 8899999999887721
Q ss_pred CChhhhHHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhh
Q 000251 1667 IDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNA 1746 (1784)
Q Consensus 1667 id~e~r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na 1746 (1784)
|.+.+++|+.|+.|+.||||+|||++++|.+||..|+.||
T Consensus 1046 ----------------------------------------~~~~fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsna 1085 (1113)
T KOG0644|consen 1046 ----------------------------------------VDNRFPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNA 1085 (1113)
T ss_pred ----------------------------------------cCCCCCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhccc
Confidence 8889999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHHhcC
Q 000251 1747 ESYFGRNTDLSTKIKRLSDLVTRTLSSL 1774 (1784)
Q Consensus 1747 ~~fN~~~s~i~~~a~~l~~~~~~~i~~~ 1774 (1784)
++|++.+..+..+|..|..||++.|.++
T Consensus 1086 e~~fg~~~~~~~ki~~l~~~~~~Tlpk~ 1113 (1113)
T KOG0644|consen 1086 ETFFGRNKNVAIKISFLSPWFDRTLPKL 1113 (1113)
T ss_pred ceeecccccHHHHhhhcchhhhhhccCC
Confidence 9999999999999999999999998764
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=431.37 Aligned_cols=361 Identities=25% Similarity=0.428 Sum_probs=311.0
Q ss_pred eEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEE
Q 000251 261 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 340 (1784)
Q Consensus 261 k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWD 340 (1784)
.+-..+.||.++|.|++|+|+|.+||||+.|.++++||+.|..+++++++|...|.||+|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCee-EEecCCCCceEEEEecCCC--CccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCC
Q 000251 341 LPDGLPI-SVLRGHTAAVTAIAFSPRP--GSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 417 (1784)
Q Consensus 341 l~tgk~i-~~L~gH~~~VtsLafSPdg--~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~ 417 (1784)
..+|+++ ..|.+|...|++++|.|-. ....+|++++.||.|+|||+..+.++..+ .+
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l--------------------sg 245 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL--------------------SG 245 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe--------------------cc
Confidence 9998765 6789999999999998742 11238999999999999999988776655 36
Q ss_pred CCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCC
Q 000251 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 497 (1784)
Q Consensus 418 h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~ 497 (1784)
|...|+|+.|--+| +|++|+.|++|++|+... +.....+.+|...|+.++.+.+................
T Consensus 246 HT~~VTCvrwGG~g-liySgS~DrtIkvw~a~d---------G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~ 315 (480)
T KOG0271|consen 246 HTASVTCVRWGGEG-LIYSGSQDRTIKVWRALD---------GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPK 315 (480)
T ss_pred CccceEEEEEcCCc-eEEecCCCceEEEEEccc---------hhHHHhhcccchheeeeeccchhhhhccccccccccCC
Confidence 89999999998665 899999999999999954 55788899999999999998654221111111111000
Q ss_pred CC-c-----cc----cccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCC
Q 000251 498 TP-K-----FK----NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 567 (1784)
Q Consensus 498 ~~-~-----~~----~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~ 567 (1784)
.. + +. ..-..+..+|+|+.|+++.+|+... ...++.++.+|.
T Consensus 316 ~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~----------------------------~kkpi~rmtgHq 367 (480)
T KOG0271|consen 316 SFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFK----------------------------SKKPITRMTGHQ 367 (480)
T ss_pred ChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccc----------------------------cccchhhhhchh
Confidence 00 0 00 0012347899999999999998663 234677888999
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEE
Q 000251 568 RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRI 647 (1784)
Q Consensus 568 ~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~t 647 (1784)
.-|+.+.||||+++||+++.|..|++|+..+|+.+.+|+||-+.|+.++|+. +.++|++|+.|.+++||++.+.++..-
T Consensus 368 ~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~D 446 (480)
T KOG0271|consen 368 ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQD 446 (480)
T ss_pred hheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeeccc
Confidence 9999999999999999999999999999999999999999999999999999 889999999999999999999999999
Q ss_pred EeccCcceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000251 648 YEISRFRLVDGKFSPDGASIILSDDVGQLYILN 680 (1784)
Q Consensus 648 l~~~~~~ItslafSPDGk~LAsgs~DG~I~IWd 680 (1784)
+.+|...|.++.|+|||+.+++|+.|..+++|.
T Consensus 447 LpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 447 LPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=387.76 Aligned_cols=332 Identities=21% Similarity=0.363 Sum_probs=288.5
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEE
Q 000251 303 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 382 (1784)
Q Consensus 303 k~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIr 382 (1784)
++-..+.||.+.|.|++|+|+|..||+|+.|.++|+||+.+..++.+.++|...|.||+|+||++ .|++|+.||+|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk---~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGK---KIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcc---hhhccccCCeEE
Confidence 34556789999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred EEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECC-----CCCEEEEeeCCceEEEEcCCCCCCCCCC
Q 000251 383 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-----NGTVFVTGSSDTLARVWNACKPNTDDSD 457 (1784)
Q Consensus 383 IWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSp-----dG~~LasGs~DG~IrVWDl~tg~~~~s~ 457 (1784)
+||..+|+.+.. .+.+|...|++++|.| ..++||+++.||.|+|||+..
T Consensus 183 lwdpktg~~~g~-------------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~------- 236 (480)
T KOG0271|consen 183 LWDPKTGQQIGR-------------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL------- 236 (480)
T ss_pred EecCCCCCcccc-------------------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC-------
Confidence 999999875433 3467999999999976 567999999999999999954
Q ss_pred CCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccc
Q 000251 458 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 537 (1784)
Q Consensus 458 ~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w 537 (1784)
+.++..+.+|+..|+|+.|-..+ +|++|+.|++|++|+...+.
T Consensus 237 --~~~~~~lsgHT~~VTCvrwGG~g---------------------------liySgS~DrtIkvw~a~dG~-------- 279 (480)
T KOG0271|consen 237 --GTCVRTLSGHTASVTCVRWGGEG---------------------------LIYSGSQDRTIKVWRALDGK-------- 279 (480)
T ss_pred --ceEEEEeccCccceEEEEEcCCc---------------------------eEEecCCCceEEEEEccchh--------
Confidence 56788999999999999998764 99999999999999987533
Q ss_pred cccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEc-----------C-------------------------CCCE
Q 000251 538 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS-----------L-------------------------DNRF 581 (1784)
Q Consensus 538 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS-----------P-------------------------DG~~ 581 (1784)
.+..+.+|...|+.++.| | .+..
T Consensus 280 ---------------------~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~er 338 (480)
T KOG0271|consen 280 ---------------------LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGER 338 (480)
T ss_pred ---------------------HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcce
Confidence 334445555555555544 2 2346
Q ss_pred EEEEecCCeEEEEECCC-CceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEE
Q 000251 582 VLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKF 660 (1784)
Q Consensus 582 LaSgs~DGsI~VWDl~t-gklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~Itslaf 660 (1784)
|++|+.|+++.+|+... .+++..+.||...|+.+.||| +++++|+|+.|..|++||..+|+.+.+|.+|-..|+.++|
T Consensus 339 lVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw 417 (480)
T KOG0271|consen 339 LVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW 417 (480)
T ss_pred eEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe
Confidence 99999999999999754 568889999999999999999 8899999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCccccccccceeecCCCcceEEccCCceeecccccccCcCCCCCcccCCCCCCCCCc
Q 000251 661 SPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEP 740 (1784)
Q Consensus 661 SPDGk~LAsgs~DG~I~IWdl~sGe~~~~~~~~~~fs~D~r~Lv~d~~g~vld~~tql~phl~~l~~~L~D~~~~p~p~~ 740 (1784)
|.|.++|++++.|.+|+||++.+.+....
T Consensus 418 saDsRLlVS~SkDsTLKvw~V~tkKl~~D--------------------------------------------------- 446 (480)
T KOG0271|consen 418 SADSRLLVSGSKDSTLKVWDVRTKKLKQD--------------------------------------------------- 446 (480)
T ss_pred ccCccEEEEcCCCceEEEEEeeeeeeccc---------------------------------------------------
Confidence 99999999999999999999976433221
Q ss_pred chhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeec
Q 000251 741 YQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQP 780 (1784)
Q Consensus 741 ~Q~l~~~rr~~v~~iAfSPDG~~LAvg~d~s~~~~v~lw~ 780 (1784)
.|||...|.++.|||||..+|.| ..+..+++|.
T Consensus 447 ----LpGh~DEVf~vDwspDG~rV~sg---gkdkv~~lw~ 479 (480)
T KOG0271|consen 447 ----LPGHADEVFAVDWSPDGQRVASG---GKDKVLRLWR 479 (480)
T ss_pred ----CCCCCceEEEEEecCCCceeecC---CCceEEEeec
Confidence 14555667899999999999999 7788888884
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=382.03 Aligned_cols=327 Identities=23% Similarity=0.429 Sum_probs=283.0
Q ss_pred EEccCCCCEEEEEECCCCC-EEEEEcCCcEEEEEECCC--CeEE--EEEe------c----CCCCeEEEEEcCCCCEEEE
Q 000251 265 RVRGHRNAVYCAIFDRSGR-YVITGSDDRLVKIWSMET--AYCL--ASCR------G----HEGDITDLAVSSNNALVAS 329 (1784)
Q Consensus 265 tL~GH~~~Vt~VaFSPDG~-~LATGS~DGtIkIWDl~T--gk~l--~tL~------g----H~~~VtsLafSpDg~lLAS 329 (1784)
++..|...|.+.+|+|-.. .||+|+.|-+.++|++.. +.+. ..|+ + ....|++|+|+.+|.+||+
T Consensus 173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~Lat 252 (524)
T KOG0273|consen 173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLAT 252 (524)
T ss_pred eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEE
Confidence 3444999999999999776 899999999999999864 1111 1111 1 2367999999999999999
Q ss_pred EeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCC
Q 000251 330 ASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 409 (1784)
Q Consensus 330 GS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~ 409 (1784)
|+.||.++||+. +|..+.+|..|.++|.+|.|...|. +|++++.||++.+||..++...+.+.+
T Consensus 253 G~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~---yilS~~vD~ttilwd~~~g~~~q~f~~------------ 316 (524)
T KOG0273|consen 253 GSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGT---YILSGGVDGTTILWDAHTGTVKQQFEF------------ 316 (524)
T ss_pred eecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCC---EEEeccCCccEEEEeccCceEEEeeee------------
Confidence 999999999995 7888999999999999999999998 999999999999999999887766643
Q ss_pred CCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccc
Q 000251 410 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 489 (1784)
Q Consensus 410 ~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~ 489 (1784)
|......+.|-.+ .-|++.+.|+.|+|+.+.. ..++.++.+|.+.|.+|.|+|.+
T Consensus 317 --------~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~---------~~P~~t~~GH~g~V~alk~n~tg------- 371 (524)
T KOG0273|consen 317 --------HSAPALDVDWQSN-DEFATSSTDGCIHVCKVGE---------DRPVKTFIGHHGEVNALKWNPTG------- 371 (524)
T ss_pred --------ccCCccceEEecC-ceEeecCCCceEEEEEecC---------CCcceeeecccCceEEEEECCCC-------
Confidence 3333456777644 4688899999999999843 45677889999999999999987
Q ss_pred cCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCC
Q 000251 490 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG 569 (1784)
Q Consensus 490 ~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~ 569 (1784)
..|+++|.|++++||.... ......+..|...
T Consensus 372 -------------------~LLaS~SdD~TlkiWs~~~-----------------------------~~~~~~l~~Hske 403 (524)
T KOG0273|consen 372 -------------------SLLASCSDDGTLKIWSMGQ-----------------------------SNSVHDLQAHSKE 403 (524)
T ss_pred -------------------ceEEEecCCCeeEeeecCC-----------------------------Ccchhhhhhhccc
Confidence 6999999999999998763 3345567788899
Q ss_pred eeEEEEcCCC---------CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000251 570 VNMIVWSLDN---------RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 640 (1784)
Q Consensus 570 VtsVafSPDG---------~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 640 (1784)
|..+.|||.| ..|++++.|++|++||+..|.++++|..|..+|++|+|+| +++++|+|+.||.|.||++.
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEecccc
Confidence 9999999965 4799999999999999999999999999999999999999 88999999999999999999
Q ss_pred CCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000251 641 EGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 682 (1784)
Q Consensus 641 tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~ 682 (1784)
++++++.+. +.+.|..++|+.+|.+|.++-.||.+.+.|+.
T Consensus 483 ~~~l~~s~~-~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 483 TGKLVKSYQ-GTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred chheeEeec-CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999997 66679999999999999999999999999874
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=390.16 Aligned_cols=429 Identities=19% Similarity=0.279 Sum_probs=346.3
Q ss_pred cchhhhcccccccccccccceEEEEEcc-CCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEE
Q 000251 241 PSIRAACYAIAKPSTMVQKMQNIKRVRG-HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLA 319 (1784)
Q Consensus 241 ~~l~s~~~~~~~~~~~~~~~k~l~tL~G-H~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLa 319 (1784)
..|..+........|.+++++.++.+++ |+++|.-++|+|.|..||+|+.||.|+|||+..+.+.+.|+||.+.|.++.
T Consensus 75 ~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~ 154 (775)
T KOG0319|consen 75 EVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLL 154 (775)
T ss_pred cEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEE
Confidence 3455555566667788889999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCC--EEEEEeCCCEEEEEECCCCCe-eEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCccccee-
Q 000251 320 VSSNNA--LVASASNDCIIRVWRLPDGLP-ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI- 395 (1784)
Q Consensus 320 fSpDg~--lLASGS~DGtIrVWDl~tgk~-i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i- 395 (1784)
|.|+-. +|++|..|++|++||+.+... +.++..|.+.|++++|++|+. .+++++.|..|.+||+.+-+....+
T Consensus 155 F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~---~~ls~~RDkvi~vwd~~~~~~l~~lp 231 (775)
T KOG0319|consen 155 FHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL---ELLSVGRDKVIIVWDLVQYKKLKTLP 231 (775)
T ss_pred eCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc---eEEEeccCcEEEEeehhhhhhhheec
Confidence 999755 689999999999999996654 888899999999999999975 6777777777777776433222111
Q ss_pred ---------------------------------------------ecCCCCCcc--------------------------
Q 000251 396 ---------------------------------------------YIPRPSDAV-------------------------- 404 (1784)
Q Consensus 396 ---------------------------------------------~l~~~~~~~-------------------------- 404 (1784)
..+......
T Consensus 232 ~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~ 311 (775)
T KOG0319|consen 232 LYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDED 311 (775)
T ss_pred hhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEcc
Confidence 100000000
Q ss_pred --------c------------CC-------------------CCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEE
Q 000251 405 --------A------------GR-------------------NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 445 (1784)
Q Consensus 405 --------~------------g~-------------------~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrV 445 (1784)
. |. .........+|...|.++....+|-+|++|+.|.++++
T Consensus 312 ~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svil 391 (775)
T KOG0319|consen 312 ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVIL 391 (775)
T ss_pred ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEE
Confidence 0 00 00001134578888899986678889999999999999
Q ss_pred EcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeC
Q 000251 446 WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIP 525 (1784)
Q Consensus 446 WDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl 525 (1784)
|.+.... ....++....+|++.|.+++++..+ ...|+++|.|+++++|++
T Consensus 392 Wr~~~~~-----~~~~~~a~~~gH~~svgava~~~~~-------------------------asffvsvS~D~tlK~W~l 441 (775)
T KOG0319|consen 392 WRLNNNC-----SKSLCVAQANGHTNSVGAVAGSKLG-------------------------ASFFVSVSQDCTLKLWDL 441 (775)
T ss_pred EEecCCc-----chhhhhhhhcccccccceeeecccC-------------------------ccEEEEecCCceEEEecC
Confidence 9883321 2244566788999999999997655 368999999999999998
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEE
Q 000251 526 RSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL 605 (1784)
Q Consensus 526 ~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L 605 (1784)
...+... .+...........|...|++|+++|+.++||||+.|.+.+||++..+.++.+|
T Consensus 442 ~~s~~~~--------------------~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vL 501 (775)
T KOG0319|consen 442 PKSKETA--------------------FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVL 501 (775)
T ss_pred CCccccc--------------------ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEe
Confidence 7411000 01111222344578899999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 000251 606 TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 685 (1784)
Q Consensus 606 ~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe 685 (1784)
.||...|+++.|+| ..++++|++.|++|+||.+.+..|+++|.+|...|..+.|-.+|+.|++++.||-|+||++.+++
T Consensus 502 sGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 502 SGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred eCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 99999999999999 77899999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccccceeecCCCcceEEccCCceeecccccccCcCCCCCcccCCCCCCCCCcchhhhhcccccccceEECCCCCeEE
Q 000251 686 SQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLA 765 (1784)
Q Consensus 686 ~~~~~~~~~~fs~D~r~Lv~d~~g~vld~~tql~phl~~l~~~L~D~~~~p~p~~~Q~l~~~rr~~v~~iAfSPDG~~LA 765 (1784)
+...+ ..|...+++++-+|.+.+++
T Consensus 581 C~~tl-------------------------------------------------------D~H~DrvWaL~~~~~~~~~~ 605 (775)
T KOG0319|consen 581 CEMTL-------------------------------------------------------DAHNDRVWALSVSPLLDMFV 605 (775)
T ss_pred hhhhh-------------------------------------------------------hhccceeEEEeecCccceeE
Confidence 86532 13455678889999999999
Q ss_pred EeeCCCCCCceEeecC
Q 000251 766 VGPDFSLDQGYQLQPL 781 (1784)
Q Consensus 766 vg~d~s~~~~v~lw~l 781 (1784)
+| +.++.+.+|.-
T Consensus 606 tg---g~Dg~i~~wkD 618 (775)
T KOG0319|consen 606 TG---GGDGRIIFWKD 618 (775)
T ss_pred ec---CCCeEEEEeec
Confidence 99 67777777754
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=348.51 Aligned_cols=475 Identities=18% Similarity=0.279 Sum_probs=360.8
Q ss_pred ccccceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCC-eE-EEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 000251 256 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA-YC-LASCRGHEGDITDLAVSSNNALVASASND 333 (1784)
Q Consensus 256 ~~~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tg-k~-l~tL~gH~~~VtsLafSpDg~lLASGS~D 333 (1784)
.+.....+..+.+|...++-..|||.|-|+|+|...|.|+|||.... .. ..+++.-.++|.+|+|+.|+++|++.+..
T Consensus 45 ~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEG 124 (603)
T KOG0318|consen 45 NIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEG 124 (603)
T ss_pred ECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecC
Confidence 44555667788999999999999999999999999999999998653 22 34567788999999999999999887653
Q ss_pred ----CEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCC
Q 000251 334 ----CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 409 (1784)
Q Consensus 334 ----GtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~ 409 (1784)
|.+.+|| +|..+..+.||...|.++.|-|... +.+++|+.|++|.+|+-.--+
T Consensus 125 rerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRP--fRi~T~sdDn~v~ffeGPPFK------------------- 181 (603)
T KOG0318|consen 125 RERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRP--FRIATGSDDNTVAFFEGPPFK------------------- 181 (603)
T ss_pred ccceeEEEEec--CCCccceeeccceeEeeeeccCCCc--eEEEeccCCCeEEEeeCCCee-------------------
Confidence 4566666 7888999999999999999999754 689999999999999753222
Q ss_pred CCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeec---CCCCCceEEEEccCccccc
Q 000251 410 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS---GHENDVNYVQFSGCAVASR 486 (1784)
Q Consensus 410 ~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~---gH~~~V~sLafSpdglas~ 486 (1784)
...+.+.|..-|.|+.|+|||.+|++.+.||.|.+||-.++. .+..+. +|.+.|.+++|+|++
T Consensus 182 -Fk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge---------~vg~l~~~~aHkGsIfalsWsPDs---- 247 (603)
T KOG0318|consen 182 -FKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE---------KVGELEDSDAHKGSIFALSWSPDS---- 247 (603)
T ss_pred -eeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc---------EEEEecCCCCccccEEEEEECCCC----
Confidence 233445688899999999999999999999999999987643 444454 999999999999997
Q ss_pred ccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccc------------cccccccc--ccCCCCCCCC
Q 000251 487 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKA------------ARWTQAYH--LKVPPPPMPP 552 (1784)
Q Consensus 487 ~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~------------~~w~~~~~--l~~~~~~~~~ 552 (1784)
..|++++.|.+++|||+.+....... ..|..... +.........
T Consensus 248 ----------------------~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~l 305 (603)
T KOG0318|consen 248 ----------------------TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYL 305 (603)
T ss_pred ----------------------ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEe
Confidence 79999999999999999987643211 22332211 1111111122
Q ss_pred CCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEE-ecCCCCeEEEEEecCCCcEEEEEeCC
Q 000251 553 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYD 631 (1784)
Q Consensus 553 ~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L-~gH~~~VtsLafSPdd~~lLaSgs~D 631 (1784)
.+....+...+.+|...|++++.++++++|++|+.||.|.-|+..+|..-+.. .+|...|.+++.+. . ..+++.|+|
T Consensus 306 n~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~-~-~~~~t~g~D 383 (603)
T KOG0318|consen 306 NPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE-S-GELFTIGWD 383 (603)
T ss_pred cccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC-C-CcEEEEecC
Confidence 23344577888999999999999999999999999999999999998776554 78999999999865 2 345688999
Q ss_pred CcEEEEeCCCC------------ce-------------------EEEEecc--------CcceEEEEEcCCCCEEEEEeC
Q 000251 632 GKTIVWDIWEG------------IP-------------------IRIYEIS--------RFRLVDGKFSPDGASIILSDD 672 (1784)
Q Consensus 632 G~IrIWDl~tG------------~~-------------------l~tl~~~--------~~~ItslafSPDGk~LAsgs~ 672 (1784)
.++++.++..+ ++ +..+..+ .....+++++|++..+|+|+.
T Consensus 384 d~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~ 463 (603)
T KOG0318|consen 384 DTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQ 463 (603)
T ss_pred CeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecc
Confidence 99999976321 00 1111111 124567899999999999999
Q ss_pred CCeEEEEECCCCcccc--------ccccceeecCCCcceEEccC-CceeecccccccCcCCCCCcccCCCCCCCCCcchh
Q 000251 673 VGQLYILNTGQGESQK--------DAKYDQFFLGDYRPLVQDTY-GNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQT 743 (1784)
Q Consensus 673 DG~I~IWdl~sGe~~~--------~~~~~~~fs~D~r~Lv~d~~-g~vld~~tql~phl~~l~~~L~D~~~~p~p~~~Q~ 743 (1784)
||.|+||.+.-++... .......|+||+..|+.... +-++ ++|..... . -..
T Consensus 464 Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv----------------~yd~~s~~--~-~~~ 524 (603)
T KOG0318|consen 464 DGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVV----------------LYDVASRE--V-KTN 524 (603)
T ss_pred cceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEE----------------EEEcccCc--e-ecc
Confidence 9999999997765322 33356699999999985543 3332 11111100 0 001
Q ss_pred hhhcccccccceEECCCCCeEEEeeCCCCCCceEeecCCCcccccC---CCccccceeeeCCCCCcccCCCCC
Q 000251 744 MYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMID---PLPEFIDVMDWEPENEVQSDDNDS 813 (1784)
Q Consensus 744 l~~~rr~~v~~iAfSPDG~~LAvg~d~s~~~~v~lw~l~~~~~li~---plp~~i~~~~wsPDg~~ls~~~~s 813 (1784)
-+.-|...+.++||||+..++|+| +++..+.+|.+..+...+. ..+..+..++|.-+.++++...|+
T Consensus 525 ~w~FHtakI~~~aWsP~n~~vATG---SlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da 594 (603)
T KOG0318|consen 525 RWAFHTAKINCVAWSPNNKLVATG---SLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDA 594 (603)
T ss_pred eeeeeeeeEEEEEeCCCceEEEec---cccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcc
Confidence 122256678999999999999999 9999999999977764432 344459999999999999876654
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=362.66 Aligned_cols=290 Identities=27% Similarity=0.450 Sum_probs=267.3
Q ss_pred eEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCEEEE
Q 000251 261 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN--NALVASASNDCIIRV 338 (1784)
Q Consensus 261 k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpD--g~lLASGS~DGtIrV 338 (1784)
.+...--|-+.+|..+.||+|++.|||||.+|.++||+..+...+.+|.||...|.++.|+|. +..||||+.||+|++
T Consensus 166 ~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvkl 245 (459)
T KOG0272|consen 166 ELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKL 245 (459)
T ss_pred hhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceee
Confidence 333344577889999999999999999999999999999999999999999999999999997 569999999999999
Q ss_pred EECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCC
Q 000251 339 WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 418 (1784)
Q Consensus 339 WDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h 418 (1784)
|++.+..++..+.+|...|..++|+|+|+ +|++++.|.+-++||+.++..+.. ..+|
T Consensus 246 w~~~~e~~l~~l~gH~~RVs~VafHPsG~---~L~TasfD~tWRlWD~~tk~ElL~--------------------QEGH 302 (459)
T KOG0272|consen 246 WKLSQETPLQDLEGHLARVSRVAFHPSGK---FLGTASFDSTWRLWDLETKSELLL--------------------QEGH 302 (459)
T ss_pred eccCCCcchhhhhcchhhheeeeecCCCc---eeeecccccchhhcccccchhhHh--------------------hccc
Confidence 99999999999999999999999999998 999999999999999998864432 3579
Q ss_pred CCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCC
Q 000251 419 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 498 (1784)
Q Consensus 419 ~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~ 498 (1784)
...|.+|+|.+||.++++|+.|..-+|||+++ +..+..+.+|...|.+|.|+|+|
T Consensus 303 s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt---------gr~im~L~gH~k~I~~V~fsPNG---------------- 357 (459)
T KOG0272|consen 303 SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT---------GRCIMFLAGHIKEILSVAFSPNG---------------- 357 (459)
T ss_pred ccccceeEecCCCceeeccCccchhheeeccc---------CcEEEEecccccceeeEeECCCc----------------
Confidence 99999999999999999999999999999987 56788999999999999999998
Q ss_pred CccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcC-
Q 000251 499 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL- 577 (1784)
Q Consensus 499 ~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP- 577 (1784)
-.|+|||.|++++|||++... ....+..|..-|+.|.|+|
T Consensus 358 ----------y~lATgs~Dnt~kVWDLR~r~-----------------------------~ly~ipAH~nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 358 ----------YHLATGSSDNTCKVWDLRMRS-----------------------------ELYTIPAHSNLVSQVKYSPQ 398 (459)
T ss_pred ----------eEEeecCCCCcEEEeeecccc-----------------------------cceecccccchhhheEeccc
Confidence 589999999999999999522 3456678999999999998
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000251 578 DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638 (1784)
Q Consensus 578 DG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD 638 (1784)
.|.+|+|++.|++++||...++.+++++.||.+.|.++.+++ ++.+++|++.|.+|++|.
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCceEEEeccCceeeecc
Confidence 889999999999999999999999999999999999999999 888999999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=352.54 Aligned_cols=287 Identities=20% Similarity=0.307 Sum_probs=266.1
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCC
Q 000251 309 RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 388 (1784)
Q Consensus 309 ~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~t 388 (1784)
.|...+|..+.|+.|+..||||+.+|.++||+..++..+.+|.+|...|.++.|+|.... ..|++++.||++++|++.+
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~-~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSD-LNLATASADGTVKLWKLSQ 250 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCc-cceeeeccCCceeeeccCC
Confidence 366789999999999999999999999999999999999999999999999999998421 2799999999999999987
Q ss_pred CcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecC
Q 000251 389 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 468 (1784)
Q Consensus 389 g~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~g 468 (1784)
...+..+ .+|...|..++|+|+|++|++++.|.+-++||+.+ ..++....|
T Consensus 251 e~~l~~l--------------------~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t---------k~ElL~QEG 301 (459)
T KOG0272|consen 251 ETPLQDL--------------------EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET---------KSELLLQEG 301 (459)
T ss_pred Ccchhhh--------------------hcchhhheeeeecCCCceeeecccccchhhccccc---------chhhHhhcc
Confidence 7655554 46888999999999999999999999999999977 446667899
Q ss_pred CCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCC
Q 000251 469 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 548 (1784)
Q Consensus 469 H~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~ 548 (1784)
|...|.+++|.++| ..++||+.|..-+|||+++++
T Consensus 302 Hs~~v~~iaf~~DG--------------------------SL~~tGGlD~~~RvWDlRtgr------------------- 336 (459)
T KOG0272|consen 302 HSKGVFSIAFQPDG--------------------------SLAATGGLDSLGRVWDLRTGR------------------- 336 (459)
T ss_pred cccccceeEecCCC--------------------------ceeeccCccchhheeecccCc-------------------
Confidence 99999999999998 689999999999999999744
Q ss_pred CCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEE
Q 000251 549 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628 (1784)
Q Consensus 549 ~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSg 628 (1784)
.+..+.+|...|..|+|||+|-.||||+.|++++|||++...++.++.+|.+-|+.|.|+|..+.+|+|+
T Consensus 337 ----------~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 337 ----------CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred ----------EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEc
Confidence 5566778999999999999999999999999999999999999999999999999999999889999999
Q ss_pred eCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000251 629 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 680 (1784)
Q Consensus 629 s~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWd 680 (1784)
++|++++||...++.+++++.+|.+.|.++.+++||++|++++.|.++++|.
T Consensus 407 syD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 407 SYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=329.44 Aligned_cols=292 Identities=22% Similarity=0.395 Sum_probs=264.3
Q ss_pred ceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEE
Q 000251 260 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 339 (1784)
Q Consensus 260 ~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVW 339 (1784)
++..++|+||.+.|+++.|++|+++|+++|.||.+.|||.-|...++.+.-...+|..+||+|.|+++|+|+-|....||
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 45568999999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred ECCCC------CeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCC
Q 000251 340 RLPDG------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 413 (1784)
Q Consensus 340 Dl~tg------k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~ 413 (1784)
++.+. ...+.+.+|++.+.|+.|.+|+ .|++++.|.++.+||+++++.+..+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~----~ilT~SGD~TCalWDie~g~~~~~f------------------ 182 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN----HILTGSGDMTCALWDIETGQQTQVF------------------ 182 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCCC----ceEecCCCceEEEEEcccceEEEEe------------------
Confidence 99754 3456789999999999999976 7999999999999999999876655
Q ss_pred CCCCCCCceEEEEECC-CCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCC
Q 000251 414 SAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 492 (1784)
Q Consensus 414 s~~~h~~~V~sLafSp-dG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s 492 (1784)
.+|.+.|.+++++| +++.|++|+-|+..+|||++. ....+.+.+|...|++|.|.|+|
T Consensus 183 --~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~---------~~c~qtF~ghesDINsv~ffP~G---------- 241 (343)
T KOG0286|consen 183 --HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS---------GQCVQTFEGHESDINSVRFFPSG---------- 241 (343)
T ss_pred --cCCcccEEEEecCCCCCCeEEecccccceeeeeccC---------cceeEeecccccccceEEEccCC----------
Confidence 46999999999999 999999999999999999986 45788999999999999999998
Q ss_pred CCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeE
Q 000251 493 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 572 (1784)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 572 (1784)
.-|++|+.|+++++||++..+...... ......+|++
T Consensus 242 ----------------~afatGSDD~tcRlyDlRaD~~~a~ys---------------------------~~~~~~gitS 278 (343)
T KOG0286|consen 242 ----------------DAFATGSDDATCRLYDLRADQELAVYS---------------------------HDSIICGITS 278 (343)
T ss_pred ----------------CeeeecCCCceeEEEeecCCcEEeeec---------------------------cCcccCCcee
Confidence 689999999999999999644211110 1123467999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000251 573 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638 (1784)
Q Consensus 573 VafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD 638 (1784)
++||..|++|++|..|.++.|||.-.++.+..|.||.+.|++|..+| ++..|++|++|.+|+||.
T Consensus 279 v~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 279 VAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcEEEecchhHheeecC
Confidence 99999999999999999999999999999999999999999999999 889999999999999994
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=340.13 Aligned_cols=415 Identities=18% Similarity=0.263 Sum_probs=342.8
Q ss_pred ccccceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeE--EEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 000251 256 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC--LASCRGHEGDITDLAVSSNNALVASASND 333 (1784)
Q Consensus 256 ~~~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~--l~tL~gH~~~VtsLafSpDg~lLASGS~D 333 (1784)
.+..+...+++.||-..|.++.|+.|.++|++||.|.+++||++...+. ...+.+|.+.|.++-|..+...|++.+.|
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskd 210 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKD 210 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecC
Confidence 4667888999999999999999999999999999999999999987665 56678999999999999999999999999
Q ss_pred CEEEEEECCC-----------------------CCe-----------eEEecCCCCceEEEEecCCCCccEEEEEEeCCC
Q 000251 334 CIIRVWRLPD-----------------------GLP-----------ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG 379 (1784)
Q Consensus 334 GtIrVWDl~t-----------------------gk~-----------i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DG 379 (1784)
|.|.+|.... ++. ..-+......|++.+|++... .|++|-..|
T Consensus 211 G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~---~lvvgFssG 287 (893)
T KOG0291|consen 211 GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTN---LLVVGFSSG 287 (893)
T ss_pred ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCce---EEEEEecCC
Confidence 9999997640 111 011222347899999999775 899999999
Q ss_pred cEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCC-ceEEEEcCCCCCCCCCCC
Q 000251 380 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD-TLARVWNACKPNTDDSDQ 458 (1784)
Q Consensus 380 tIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~D-G~IrVWDl~tg~~~~s~~ 458 (1784)
...+|.+..-.++..+.+ ....|..++|+..|.+||.|+.. |.+-||+..+
T Consensus 288 ~f~LyelP~f~lih~LSi--------------------s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs-------- 339 (893)
T KOG0291|consen 288 EFGLYELPDFNLIHSLSI--------------------SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS-------- 339 (893)
T ss_pred eeEEEecCCceEEEEeec--------------------ccceeeEEEecccCCEEEEcCCccceEEEEEeec--------
Confidence 999999988777766643 34569999999999999999875 7899999854
Q ss_pred CCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccccccc
Q 000251 459 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 538 (1784)
Q Consensus 459 ~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~ 538 (1784)
..-+....+|...+++++++|+| .++++|+.||.|+|||..+
T Consensus 340 -EsYVlKQQgH~~~i~~l~YSpDg--------------------------q~iaTG~eDgKVKvWn~~S----------- 381 (893)
T KOG0291|consen 340 -ESYVLKQQGHSDRITSLAYSPDG--------------------------QLIATGAEDGKVKVWNTQS----------- 381 (893)
T ss_pred -cceeeeccccccceeeEEECCCC--------------------------cEEEeccCCCcEEEEeccC-----------
Confidence 34566778999999999999998 7999999999999999885
Q ss_pred ccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCC-CeEEEEE
Q 000251 539 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTE-STYVLDV 617 (1784)
Q Consensus 539 ~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~-~VtsLaf 617 (1784)
+.+..++..|...|+.+.|+..|+.|++.+.||+|+.||+...+..+++..... ...|++.
T Consensus 382 ------------------gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscvav 443 (893)
T KOG0291|consen 382 ------------------GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAV 443 (893)
T ss_pred ------------------ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEE
Confidence 456677888999999999999999999999999999999999999999986543 3567888
Q ss_pred ecCCCcEEEEEeCCC-cEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccccceee
Q 000251 618 HPFNPRIAMSAGYDG-KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFF 696 (1784)
Q Consensus 618 SPdd~~lLaSgs~DG-~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~~~~~~~~~~f 696 (1784)
.| .+.++.+|+.|. .|.||++++|+++-.+.+|.++|.+++|+|+|..||+++.|.+|++|++-...
T Consensus 444 D~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~----------- 511 (893)
T KOG0291|consen 444 DP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS----------- 511 (893)
T ss_pred cC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC-----------
Confidence 88 677877787776 69999999999999999999999999999999999999999999999973211
Q ss_pred cCCCcceEEccCCceeecccccccCcCCCCCcccCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCce
Q 000251 697 LGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGY 776 (1784)
Q Consensus 697 s~D~r~Lv~d~~g~vld~~tql~phl~~l~~~L~D~~~~p~p~~~Q~l~~~rr~~v~~iAfSPDG~~LAvg~d~s~~~~v 776 (1784)
+.+ ++++ .+..+++++|+|||+.|||+ ..++++
T Consensus 512 ------------~~v---------------------------Etl~-----i~sdvl~vsfrPdG~elaVa---TldgqI 544 (893)
T KOG0291|consen 512 ------------GTV---------------------------ETLE-----IRSDVLAVSFRPDGKELAVA---TLDGQI 544 (893)
T ss_pred ------------cee---------------------------eeEe-----eccceeEEEEcCCCCeEEEE---EecceE
Confidence 000 0011 12457799999999999999 889999
Q ss_pred EeecCCCccccc---------------C-------CCccccceeeeCCCCCcccCCCCCccc
Q 000251 777 QLQPLADLDVMI---------------D-------PLPEFIDVMDWEPENEVQSDDNDSEYN 816 (1784)
Q Consensus 777 ~lw~l~~~~~li---------------~-------plp~~i~~~~wsPDg~~ls~~~~s~~~ 816 (1784)
.+|+......+. + ......+.+++|+||..+.....+-++
T Consensus 545 tf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~i 606 (893)
T KOG0291|consen 545 TFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSI 606 (893)
T ss_pred EEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccE
Confidence 999884333220 0 112557789999999988877665544
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=347.91 Aligned_cols=387 Identities=19% Similarity=0.242 Sum_probs=315.1
Q ss_pred CCCccccccccccccccCCccccccCCcchhhhcccccccccccccceEEEEEccCCCCEEEEEECCCCC--EEEEEcCC
Q 000251 214 WPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGR--YVITGSDD 291 (1784)
Q Consensus 214 ~p~~~~~~V~~l~~r~~Gg~~~~~~~~~~l~s~~~~~~~~~~~~~~~k~l~tL~GH~~~Vt~VaFSPDG~--~LATGS~D 291 (1784)
|-..|...|-.+.+.+.|+ .+++++.....+.|++....+.+.|+||.+.|.++.|+|+-. .|++|..|
T Consensus 100 wKa~He~Pvi~ma~~~~g~---------LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D 170 (775)
T KOG0319|consen 100 WKAIHEAPVITMAFDPTGT---------LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATD 170 (775)
T ss_pred HhhccCCCeEEEEEcCCCc---------eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCC
Confidence 3334555566666666553 455666778889999999999999999999999999999765 48999999
Q ss_pred cEEEEEECCCCeE-EEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCee-----------------------
Q 000251 292 RLVKIWSMETAYC-LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI----------------------- 347 (1784)
Q Consensus 292 GtIkIWDl~Tgk~-l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i----------------------- 347 (1784)
++|++||+.+... ++++..|...|++++|++|+..+++++.|..|.|||+.+.+.+
T Consensus 171 ~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~ 250 (775)
T KOG0319|consen 171 GTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKG 250 (775)
T ss_pred ceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcc
Confidence 9999999986554 8888999999999999999999999999999999987220000
Q ss_pred --------------------------------------------------------------------------------
Q 000251 348 -------------------------------------------------------------------------------- 347 (1784)
Q Consensus 348 -------------------------------------------------------------------------------- 347 (1784)
T Consensus 251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~ 330 (775)
T KOG0319|consen 251 EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMK 330 (775)
T ss_pred eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeee
Confidence
Q ss_pred ----------------------------EEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCC
Q 000251 348 ----------------------------SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR 399 (1784)
Q Consensus 348 ----------------------------~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~ 399 (1784)
..+.||+..|.++....+|- +|++|+.|.++++|.++.+.....
T Consensus 331 ~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~---llat~sKD~svilWr~~~~~~~~~----- 402 (775)
T KOG0319|consen 331 FLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGD---LLATGSKDKSVILWRLNNNCSKSL----- 402 (775)
T ss_pred ecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCc---EEEEecCCceEEEEEecCCcchhh-----
Confidence 01234555566666333443 899999999999999854432211
Q ss_pred CCCcccCCCCCCCCCCCCCCCceEEEEECCCC-CEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEE
Q 000251 400 PSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 478 (1784)
Q Consensus 400 ~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG-~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLaf 478 (1784)
......+|.+.|.+++++..+ .+|++++.|+++++|++...+................|...|+++++
T Consensus 403 -----------~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai 471 (775)
T KOG0319|consen 403 -----------CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI 471 (775)
T ss_pred -----------hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe
Confidence 122345789999999998765 68999999999999999763221111111112245689999999999
Q ss_pred ccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCC
Q 000251 479 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGG 558 (1784)
Q Consensus 479 Spdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~ 558 (1784)
+|+. ..|+|||.|.+.+||++.. ..
T Consensus 472 a~nd--------------------------kLiAT~SqDktaKiW~le~-----------------------------~~ 496 (775)
T KOG0319|consen 472 APND--------------------------KLIATGSQDKTAKIWDLEQ-----------------------------LR 496 (775)
T ss_pred cCCC--------------------------ceEEecccccceeeecccC-----------------------------ce
Confidence 9985 7999999999999999884 33
Q ss_pred CceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000251 559 PRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638 (1784)
Q Consensus 559 ~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD 638 (1784)
....+.+|..+|.+|.|++..+.++|++.|++|+||.+.++.++++|.||...|..+.|-. ++..|+|++.||.|+||+
T Consensus 497 l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 497 LLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLISAGADGLIKLWN 575 (775)
T ss_pred EEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEEeccCCCcEEEEe
Confidence 4567789999999999999999999999999999999999999999999999999999988 677888999999999999
Q ss_pred CCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000251 639 IWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 684 (1784)
Q Consensus 639 l~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sG 684 (1784)
+.++.|+.++..|...|++++.+|.+.++++|+.||.|.+|.-.+-
T Consensus 576 ikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 576 IKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred ccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9999999999999999999999999999999999999999986554
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=334.01 Aligned_cols=424 Identities=17% Similarity=0.264 Sum_probs=337.2
Q ss_pred CCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCC--------eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEE
Q 000251 269 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA--------YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 340 (1784)
Q Consensus 269 H~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tg--------k~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWD 340 (1784)
-..+|.|+.|||+|+++|.|.. ..+.||..... .+.+++.+|...|++|.|+.|.++|++|+.|-+++||+
T Consensus 95 fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~ 173 (893)
T KOG0291|consen 95 FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFG 173 (893)
T ss_pred ecCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEE
Confidence 3578999999999999998865 58999986432 34566779999999999999999999999999999999
Q ss_pred CCCCCe--eEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCc-------ccCCC---
Q 000251 341 LPDGLP--ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA-------VAGRN--- 408 (1784)
Q Consensus 341 l~tgk~--i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~-------~~g~~--- 408 (1784)
+...+- ...+.+|...|.+.-|..+.. .+++.+.||.|.+|.....-... ......... ..+..
T Consensus 174 v~~~k~~~~~~l~gHkd~VvacfF~~~~~---~l~tvskdG~l~~W~~~~~P~~~-~~~~kd~eg~~d~~~~~~~Eek~~ 249 (893)
T KOG0291|consen 174 VDGNKNLFTYALNGHKDYVVACFFGANSL---DLYTVSKDGALFVWTCDLRPPEL-DKAEKDEEGSDDEEMDEDGEEKTH 249 (893)
T ss_pred eccccccceEeccCCCcceEEEEeccCcc---eEEEEecCceEEEEEecCCCccc-ccccccccccccccccccchhhhc
Confidence 976655 567789999999999999875 89999999999999876321000 000000000 00000
Q ss_pred --C---CCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcc
Q 000251 409 --M---APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 483 (1784)
Q Consensus 409 --~---~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdgl 483 (1784)
. ....-.......|++.+|++....||+|-..|...+|.+.. ...+..+.-....|..++|+..|
T Consensus 250 ~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~---------f~lih~LSis~~~I~t~~~N~tG- 319 (893)
T KOG0291|consen 250 KIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD---------FNLIHSLSISDQKILTVSFNSTG- 319 (893)
T ss_pred ceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC---------ceEEEEeecccceeeEEEecccC-
Confidence 0 00111122337799999999999999999999999999843 44667777777889999999766
Q ss_pred cccccccCCCCCCCCCccccccccCCeEEEEeCC-CcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCcee
Q 000251 484 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD-GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 562 (1784)
Q Consensus 484 as~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~D-GtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~ 562 (1784)
+.|+.|+.. |.+.||+..+. .-+..
T Consensus 320 -------------------------DWiA~g~~klgQLlVweWqsE-----------------------------sYVlK 345 (893)
T KOG0291|consen 320 -------------------------DWIAFGCSKLGQLLVWEWQSE-----------------------------SYVLK 345 (893)
T ss_pred -------------------------CEEEEcCCccceEEEEEeecc-----------------------------ceeee
Confidence 788877664 99999988751 22344
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 000251 563 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 642 (1784)
Q Consensus 563 l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG 642 (1784)
..+|...++++++||||++||+|+.||.|+|||..+|-|..+|..|+..|+++.|+. .++.+++++-||+|+.||+...
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeeccc
Confidence 567899999999999999999999999999999999999999999999999999999 7889999999999999999999
Q ss_pred ceEEEEeccCc-ceEEEEEcCCCCEEEEEeCCC-eEEEEECCCCccccccccceeecCCCcceEEccCCceeeccccccc
Q 000251 643 IPIRIYEISRF-RLVDGKFSPDGASIILSDDVG-QLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAP 720 (1784)
Q Consensus 643 ~~l~tl~~~~~-~ItslafSPDGk~LAsgs~DG-~I~IWdl~sGe~~~~~~~~~~fs~D~r~Lv~d~~g~vld~~tql~p 720 (1784)
+..++|..... ...+++..|.|.++++|+.|. .|+||++.+|+.+..+
T Consensus 425 rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL------------------------------ 474 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL------------------------------ 474 (893)
T ss_pred ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh------------------------------
Confidence 99999984432 356888999999999987765 8999999998765421
Q ss_pred CcCCCCCcccCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeecCCCcccccCCCc--ccccee
Q 000251 721 HRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLP--EFIDVM 798 (1784)
Q Consensus 721 hl~~l~~~L~D~~~~p~p~~~Q~l~~~rr~~v~~iAfSPDG~~LAvg~d~s~~~~v~lw~l~~~~~li~plp--~~i~~~ 798 (1784)
.||...|.+++|+|+|..||.+ +-+.++++|++-+.....++++ .-+..+
T Consensus 475 -------------------------sGHEgPVs~l~f~~~~~~LaS~---SWDkTVRiW~if~s~~~vEtl~i~sdvl~v 526 (893)
T KOG0291|consen 475 -------------------------SGHEGPVSGLSFSPDGSLLASG---SWDKTVRIWDIFSSSGTVETLEIRSDVLAV 526 (893)
T ss_pred -------------------------cCCCCcceeeEEccccCeEEec---cccceEEEEEeeccCceeeeEeeccceeEE
Confidence 2333446688999999999999 8999999999977666667654 557789
Q ss_pred eeCCCCCcccCCCCCccccccc
Q 000251 799 DWEPENEVQSDDNDSEYNVAEE 820 (1784)
Q Consensus 799 ~wsPDg~~ls~~~~s~~~~~e~ 820 (1784)
+|+|||+.++...+++-+-=++
T Consensus 527 sfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 527 SFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred EEcCCCCeEEEEEecceEEEEE
Confidence 9999999999988887553333
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=318.16 Aligned_cols=371 Identities=15% Similarity=0.161 Sum_probs=292.5
Q ss_pred hhcccccccccccccceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEe---cCCCCeEEEEEc
Q 000251 245 AACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR---GHEGDITDLAVS 321 (1784)
Q Consensus 245 s~~~~~~~~~~~~~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~---gH~~~VtsLafS 321 (1784)
+.+.+.......-..++...+++.|..-|+|+.|+|||.++||++.||.|.|||-.+|+.+..|. +|.+.|.+|+|+
T Consensus 165 T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWs 244 (603)
T KOG0318|consen 165 TGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWS 244 (603)
T ss_pred eccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEEC
Confidence 33344444444556778888999999999999999999999999999999999999999999998 899999999999
Q ss_pred CCCCEEEEEeCCCEEEEEECCCCCeeEEecCCC---CceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecC
Q 000251 322 SNNALVASASNDCIIRVWRLPDGLPISVLRGHT---AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIP 398 (1784)
Q Consensus 322 pDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~---~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~ 398 (1784)
||++.|++++.|.+++|||+.+.++++++.-.. ..-..+.|..+ .|++.+.+|+|.+++......+..+
T Consensus 245 PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd-----~lItVSl~G~in~ln~~d~~~~~~i--- 316 (603)
T KOG0318|consen 245 PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKD-----HLITVSLSGTINYLNPSDPSVLKVI--- 316 (603)
T ss_pred CCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCC-----eEEEEEcCcEEEEecccCCChhhee---
Confidence 999999999999999999999999998885332 33445566633 7999999999999999887744443
Q ss_pred CCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEE
Q 000251 399 RPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 478 (1784)
Q Consensus 399 ~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLaf 478 (1784)
.+|...|++++.++++.+|++|+.||.|.-|+..++... ...-.+|...|..++.
T Consensus 317 -----------------~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~--------~~~g~~h~nqI~~~~~ 371 (603)
T KOG0318|consen 317 -----------------SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD--------RLAGKGHTNQIKGMAA 371 (603)
T ss_pred -----------------cccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc--------ccccccccceEEEEee
Confidence 479999999999999999999999999999999765321 1122679999999987
Q ss_pred ccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCC-
Q 000251 479 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG- 557 (1784)
Q Consensus 479 Spdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~- 557 (1784)
+.. ..+++++.|.++++.++....... ...+.+...|........
T Consensus 372 ~~~---------------------------~~~~t~g~Dd~l~~~~~~~~~~t~-------~~~~~lg~QP~~lav~~d~ 417 (603)
T KOG0318|consen 372 SES---------------------------GELFTIGWDDTLRVISLKDNGYTK-------SEVVKLGSQPKGLAVLSDG 417 (603)
T ss_pred cCC---------------------------CcEEEEecCCeEEEEecccCcccc-------cceeecCCCceeEEEcCCC
Confidence 754 378899999999998875432111 100111111111000000
Q ss_pred --------CCcee--------ccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceE--EEEecCCCCeEEEEEec
Q 000251 558 --------GPRQR--------ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV--HSLTGHTESTYVLDVHP 619 (1784)
Q Consensus 558 --------~~~~~--------l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv--~~L~gH~~~VtsLafSP 619 (1784)
..+.. .........+++++|++..+++|+.|+.|+||.+..+.+. ..+..|.+.|+++++||
T Consensus 418 ~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp 497 (603)
T KOG0318|consen 418 GTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP 497 (603)
T ss_pred CEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC
Confidence 01111 1122345788999999999999999999999999876643 35678999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEE-EeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000251 620 FNPRIAMSAGYDGKTIVWDIWEGIPIRI-YEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 683 (1784)
Q Consensus 620 dd~~lLaSgs~DG~IrIWDl~tG~~l~t-l~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~s 683 (1784)
++.+||+|...+.|.+||+.+.+.... +.-|...|.+++|+|+.++||+|+-|-.|.||++..
T Consensus 498 -d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 498 -DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred -CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence 889999999999999999998876433 334888999999999999999999999999999864
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=299.99 Aligned_cols=295 Identities=21% Similarity=0.314 Sum_probs=236.8
Q ss_pred cceEEEEEccCCCCEEEEEECCC-CCEEEEEcCCcEEEEEEC-----CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 000251 259 KMQNIKRVRGHRNAVYCAIFDRS-GRYVITGSDDRLVKIWSM-----ETAYCLASCRGHEGDITDLAVSSNNALVASASN 332 (1784)
Q Consensus 259 ~~k~l~tL~GH~~~Vt~VaFSPD-G~~LATGS~DGtIkIWDl-----~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~ 332 (1784)
.+....+|+||.+.|+.++..+. -..|++++.|.+|.+|++ ..|..++.+.||...|..++.++||++.++++.
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc
Confidence 45567789999999999999987 468889999999999987 457889999999999999999999999999999
Q ss_pred CCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCC
Q 000251 333 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 412 (1784)
Q Consensus 333 DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~ 412 (1784)
|+++++||+.+|+..+.|.+|...|.+++|++|+. .+++|+.|.+|.+|++.... ..++.
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~---qivSGSrDkTiklwnt~g~c-k~t~~---------------- 143 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR---QIVSGSRDKTIKLWNTLGVC-KYTIH---------------- 143 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEecCCCc---eeecCCCcceeeeeeecccE-EEEEe----------------
Confidence 99999999999999999999999999999999987 89999999999999986432 11110
Q ss_pred CCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCC
Q 000251 413 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 492 (1784)
Q Consensus 413 ~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s 492 (1784)
...+...|.|+.|+|+ ..
T Consensus 144 --~~~~~~WVscvrfsP~---------------------------------------------------~~--------- 161 (315)
T KOG0279|consen 144 --EDSHREWVSCVRFSPN---------------------------------------------------ES--------- 161 (315)
T ss_pred --cCCCcCcEEEEEEcCC---------------------------------------------------CC---------
Confidence 0011344555555554 20
Q ss_pred CCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeE
Q 000251 493 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 572 (1784)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 572 (1784)
...|++++.|++|++||+++.+ ....+.+|...++.
T Consensus 162 ---------------~p~Ivs~s~DktvKvWnl~~~~-----------------------------l~~~~~gh~~~v~t 197 (315)
T KOG0279|consen 162 ---------------NPIIVSASWDKTVKVWNLRNCQ-----------------------------LRTTFIGHSGYVNT 197 (315)
T ss_pred ---------------CcEEEEccCCceEEEEccCCcc-----------------------------hhhccccccccEEE
Confidence 1345555555555555555311 22334567788999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEecc-
Q 000251 573 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS- 651 (1784)
Q Consensus 573 VafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~- 651 (1784)
+++||||..+++|+.||.+.+||+..++.+..+. |...|.+++|+| +...| ++..+..|+|||+.++.++..+...
T Consensus 198 ~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fsp-nrywL-~~at~~sIkIwdl~~~~~v~~l~~d~ 274 (315)
T KOG0279|consen 198 VTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSP-NRYWL-CAATATSIKIWDLESKAVVEELKLDG 274 (315)
T ss_pred EEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecC-CceeE-eeccCCceEEEeccchhhhhhccccc
Confidence 9999999999999999999999999999988876 778899999999 54444 5556777999999999888776521
Q ss_pred --------CcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000251 652 --------RFRLVDGKFSPDGASIILSDDVGQLYILNTG 682 (1784)
Q Consensus 652 --------~~~ItslafSPDGk~LAsgs~DG~I~IWdl~ 682 (1784)
.....+++||+||+.|++|..|+.|++|.+.
T Consensus 275 ~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 275 IGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 1124568999999999999999999999875
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=328.18 Aligned_cols=433 Identities=17% Similarity=0.257 Sum_probs=334.3
Q ss_pred hhhhcc-cccccccccccceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEc
Q 000251 243 IRAACY-AIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVS 321 (1784)
Q Consensus 243 l~s~~~-~~~~~~~~~~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafS 321 (1784)
+.+++| +..+..|........-+|.||..+|+++.|+..|.+||+||.|+.|.|||+-.-.-+..++||...|+.+-|.
T Consensus 79 ~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 79 LLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL 158 (888)
T ss_pred eEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence 345555 3445556666668889999999999999999999999999999999999998888889999999999999999
Q ss_pred CCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCc----------c
Q 000251 322 SNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ----------F 391 (1784)
Q Consensus 322 pDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~----------~ 391 (1784)
.+.++|++.+.|+.|++||+.+..+..+.-.|.+.|+++++.++ .+++++.|+.+++|++.... +
T Consensus 159 ~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~-----~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~ 233 (888)
T KOG0306|consen 159 NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEK-----LLVTAGTDSELKVWELAFEDDEKETNRYIST 233 (888)
T ss_pred CCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecc-----eEEEEecCCceEEEEeeccccccccccccee
Confidence 88889999999999999999999999999999999999999993 79999999999999981100 0
Q ss_pred c-----------ceeecCCCC-C---------------------------------------------ccc---------
Q 000251 392 S-----------PRIYIPRPS-D---------------------------------------------AVA--------- 405 (1784)
Q Consensus 392 l-----------~~i~l~~~~-~---------------------------------------------~~~--------- 405 (1784)
. ..+.+..+. . .+.
T Consensus 234 ~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r 313 (888)
T KOG0306|consen 234 KLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKR 313 (888)
T ss_pred eccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHH
Confidence 0 000000000 0 000
Q ss_pred -----------------C--CC------------------CCC---------CCCCCCCCCceEEEEECCCCCEEEEeeC
Q 000251 406 -----------------G--RN------------------MAP---------SSSAGPQSHQIFCCAFNANGTVFVTGSS 439 (1784)
Q Consensus 406 -----------------g--~~------------------~~~---------~~s~~~h~~~V~sLafSpdG~~LasGs~ 439 (1784)
+ .. ... .....+|...|.+++++.+...+++|+
T Consensus 314 ~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga- 392 (888)
T KOG0306|consen 314 LETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA- 392 (888)
T ss_pred HHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-
Confidence 0 00 000 123457888899999998887777665
Q ss_pred CceEEEEcCCCCCCCCCCCC-------------------------------CcceeeecCCCCCceEEEEccCccccccc
Q 000251 440 DTLARVWNACKPNTDDSDQP-------------------------------NHEIDVLSGHENDVNYVQFSGCAVASRFS 488 (1784)
Q Consensus 440 DG~IrVWDl~tg~~~~s~~~-------------------------------~~~i~~l~gH~~~V~sLafSpdglas~~~ 488 (1784)
.+.|.||+..+.++..+... ...+....+|.+.|+.++.+|++
T Consensus 393 ~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~------ 466 (888)
T KOG0306|consen 393 GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN------ 466 (888)
T ss_pred CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC------
Confidence 56799999876553221110 11122345677777777777765
Q ss_pred ccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCC
Q 000251 489 LADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR 568 (1784)
Q Consensus 489 ~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~ 568 (1784)
..+++||.|.+|++||+.--.. .+... ...-.-...+...-..
T Consensus 467 --------------------~g~vT~saDktVkfWdf~l~~~--------------~~gt~---~k~lsl~~~rtLel~d 509 (888)
T KOG0306|consen 467 --------------------KGFVTGSADKTVKFWDFKLVVS--------------VPGTQ---KKVLSLKHTRTLELED 509 (888)
T ss_pred --------------------CceEEecCCcEEEEEeEEEEec--------------cCccc---ceeeeeccceEEeccc
Confidence 7899999999999999873110 00000 0000011123444567
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE
Q 000251 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIY 648 (1784)
Q Consensus 569 ~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl 648 (1784)
.|.|+.+||||++|+++--|.+|+||-+.+-+....|.||.-+|.||..|| ++.+++|||.|.+|+||-+.=|.|-+.+
T Consensus 510 dvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~ 588 (888)
T KOG0306|consen 510 DVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSF 588 (888)
T ss_pred cEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhh
Confidence 899999999999999999999999999999999999999999999999999 8899999999999999999999999999
Q ss_pred eccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccccceeecCCCcceEEccCCceeecccccccCcCCCCCc
Q 000251 649 EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDP 728 (1784)
Q Consensus 649 ~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~~~~~~~~~~fs~D~r~Lv~d~~g~vld~~tql~phl~~l~~~ 728 (1784)
.+|...|.++.|-|....+.+++.||.|+-||-..-+.+.
T Consensus 589 fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq---------------------------------------- 628 (888)
T KOG0306|consen 589 FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQ---------------------------------------- 628 (888)
T ss_pred hcccCceeEEEEcccceeEEEecCcceEEeechhhhhhhe----------------------------------------
Confidence 9999999999999999999999999999999954322211
Q ss_pred ccCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeecCCC
Q 000251 729 LCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLAD 783 (1784)
Q Consensus 729 L~D~~~~p~p~~~Q~l~~~rr~~v~~iAfSPDG~~LAvg~d~s~~~~v~lw~l~~ 783 (1784)
.+++|...++++|.+|+|.+++.+ +.+..+++|.-.+
T Consensus 629 ---------------~L~~H~~ev~cLav~~~G~~vvs~---shD~sIRlwE~td 665 (888)
T KOG0306|consen 629 ---------------KLDGHHSEVWCLAVSPNGSFVVSS---SHDKSIRLWERTD 665 (888)
T ss_pred ---------------eeccchheeeeeEEcCCCCeEEec---cCCceeEeeeccC
Confidence 123455678899999999999999 8899999998743
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=298.43 Aligned_cols=293 Identities=19% Similarity=0.251 Sum_probs=262.7
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEe
Q 000251 306 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 385 (1784)
Q Consensus 306 ~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWD 385 (1784)
++|+||.+.|.++.|++|.++|++++.||.+.|||.-+...+..+.-....|..++|+|.++ ++++|+.|..+.||+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~---~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGN---FVACGGLDNKCSIYP 125 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCC---eEEecCcCceeEEEe
Confidence 78899999999999999999999999999999999999988888888899999999999997 999999999999999
Q ss_pred cCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceee
Q 000251 386 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 465 (1784)
Q Consensus 386 l~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~ 465 (1784)
+.+....... .....+.+|.+.+.|+.|.+| ..|++++.|.++.+||+.+ ++.+..
T Consensus 126 ls~~d~~g~~--------------~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~---------g~~~~~ 181 (343)
T KOG0286|consen 126 LSTRDAEGNV--------------RVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIET---------GQQTQV 181 (343)
T ss_pred cccccccccc--------------eeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEccc---------ceEEEE
Confidence 9855211111 112335679999999999975 4689999999999999976 557889
Q ss_pred ecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccC
Q 000251 466 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKV 545 (1784)
Q Consensus 466 l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~ 545 (1784)
+.+|.+.|.++.++|.. .+.+++|+.|+..+|||++.
T Consensus 182 f~GH~gDV~slsl~p~~-------------------------~ntFvSg~cD~~aklWD~R~------------------ 218 (343)
T KOG0286|consen 182 FHGHTGDVMSLSLSPSD-------------------------GNTFVSGGCDKSAKLWDVRS------------------ 218 (343)
T ss_pred ecCCcccEEEEecCCCC-------------------------CCeEEecccccceeeeeccC------------------
Confidence 99999999999999942 37999999999999999995
Q ss_pred CCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecC--CCCeEEEEEecCCCc
Q 000251 546 PPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH--TESTYVLDVHPFNPR 623 (1784)
Q Consensus 546 ~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH--~~~VtsLafSPdd~~ 623 (1784)
+...+.+.+|...|++|.|.|+|.-+++|+.|++.++||++..+.+..+... ..+|++++||. .++
T Consensus 219 -----------~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~-SGR 286 (343)
T KOG0286|consen 219 -----------GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK-SGR 286 (343)
T ss_pred -----------cceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc-ccc
Confidence 4567788999999999999999999999999999999999999999888732 34799999998 889
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000251 624 IAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 680 (1784)
Q Consensus 624 lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWd 680 (1784)
+|++|..|.++.+||.-.++.+..+.+|...|.++..+|||.-|++|+.|..|+||.
T Consensus 287 lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 287 LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999999999999999999999999999999999999994
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=302.53 Aligned_cols=339 Identities=17% Similarity=0.261 Sum_probs=281.6
Q ss_pred EEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEC
Q 000251 262 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 341 (1784)
Q Consensus 262 ~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl 341 (1784)
-+.+|..|+..|++|+.+|+.+++|||+.|..-.||++.+|..+..+.+|...|+++.|+.+|.+||||+.+|.|+||..
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCc
Q 000251 342 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 421 (1784)
Q Consensus 342 ~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~ 421 (1784)
.++.....+...-..|.=+.|+|.+. .|++|+.||.|.+|.+..+...+.+ .+|+..
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~---illAG~~DGsvWmw~ip~~~~~kv~--------------------~Gh~~~ 192 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAH---ILLAGSTDGSVWMWQIPSQALCKVM--------------------SGHNSP 192 (399)
T ss_pred ccCceEEEeecccCceEEEEeccccc---EEEeecCCCcEEEEECCCcceeeEe--------------------cCCCCC
Confidence 99998888876677888899999775 9999999999999999876444433 358888
Q ss_pred eEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecC-CCCCceEEEEccCcccccccccCCCCCCCCCc
Q 000251 422 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG-HENDVNYVQFSGCAVASRFSLADSSKEDSTPK 500 (1784)
Q Consensus 422 V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~g-H~~~V~sLafSpdglas~~~~~~s~~~~~~~~ 500 (1784)
+++-.|.|+|+.+++|..||+|++|+..+++ ++..+.+ ......++.++..+
T Consensus 193 ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~---------p~~~~~~~e~~~~~~~~~~~~~------------------ 245 (399)
T KOG0296|consen 193 CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ---------PLHKITQAEGLELPCISLNLAG------------------ 245 (399)
T ss_pred cccccccCCCceEEEEecCceEEEEecCCCc---------eeEEecccccCcCCcccccccc------------------
Confidence 9999999999999999999999999998753 3333322 13345556665443
Q ss_pred cccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCC---CCeeEEEEcC
Q 000251 501 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP---RGVNMIVWSL 577 (1784)
Q Consensus 501 ~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~---~~VtsVafSP 577 (1784)
..++.|+.++.+.+-+..+++....... ........+. ..|-++.||.
T Consensus 246 --------~~~~~g~~e~~~~~~~~~sgKVv~~~n~---------------------~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 246 --------STLTKGNSEGVACGVNNGSGKVVNCNNG---------------------TVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred --------ceeEeccCCccEEEEccccceEEEecCC---------------------CCccccccchhhhhhhhhccccc
Confidence 5788889999988887776553221110 0000111122 3455566677
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEE
Q 000251 578 DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVD 657 (1784)
Q Consensus 578 DG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~Its 657 (1784)
.-.+.|+|+.||+|.|||+...++.+.+. |...|+.+.|-+ ..+|++++.+|.|++||..+|+++.++.+|...|.+
T Consensus 297 ~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~ 373 (399)
T KOG0296|consen 297 KLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILD 373 (399)
T ss_pred ccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeE
Confidence 77889999999999999999888777766 788899999987 467778999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECC
Q 000251 658 GKFSPDGASIILSDDVGQLYILNTG 682 (1784)
Q Consensus 658 lafSPDGk~LAsgs~DG~I~IWdl~ 682 (1784)
++++|+++++++++.|++.+||+..
T Consensus 374 f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 374 FALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999864
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=311.34 Aligned_cols=311 Identities=23% Similarity=0.353 Sum_probs=275.0
Q ss_pred ccccceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCE
Q 000251 256 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCI 335 (1784)
Q Consensus 256 ~~~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGt 335 (1784)
.+....+.+.+.||..+|+.+-|+|+-..+|++++|++|++||..+|++...++||...|.+|+|+..|++||+++.|-.
T Consensus 94 wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~ 173 (406)
T KOG0295|consen 94 WIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLS 173 (406)
T ss_pred cCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccc
Confidence 34455667789999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EEEEECCC-CCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCC
Q 000251 336 IRVWRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 414 (1784)
Q Consensus 336 IrVWDl~t-gk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s 414 (1784)
+.+||..+ .++++.+.+|...|.+++|-|.+. +|++++.|.+|+.|++.++-++.++
T Consensus 174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd---~ilS~srD~tik~We~~tg~cv~t~------------------- 231 (406)
T KOG0295|consen 174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD---HILSCSRDNTIKAWECDTGYCVKTF------------------- 231 (406)
T ss_pred hhheeHHHHHHHHHHhcCcccceeeEEEEecCC---eeeecccccceeEEecccceeEEec-------------------
Confidence 99999876 577888999999999999999986 9999999999999999999888776
Q ss_pred CCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCC
Q 000251 415 AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 494 (1784)
Q Consensus 415 ~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~ 494 (1784)
.+|...|..+..+.||.++|+++.|.+|++|-+.+ ......+..|+.+|.+++|.|....+......
T Consensus 232 -~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t---------~~~k~~lR~hEh~vEci~wap~~~~~~i~~at--- 298 (406)
T KOG0295|consen 232 -PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT---------KQCKAELREHEHPVECIAWAPESSYPSISEAT--- 298 (406)
T ss_pred -cCchHhEEEEEecCCeeEEEecCCCceEEEEEecc---------chhhhhhhccccceEEEEecccccCcchhhcc---
Confidence 35777899999999999999999999999999976 33566789999999999999875322111110
Q ss_pred CCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEE
Q 000251 495 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 574 (1784)
Q Consensus 495 ~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 574 (1784)
..-.....+++++.|++|++||+.+ +.++..+.+|...|..++
T Consensus 299 --------~~~~~~~~l~s~SrDktIk~wdv~t-----------------------------g~cL~tL~ghdnwVr~~a 341 (406)
T KOG0295|consen 299 --------GSTNGGQVLGSGSRDKTIKIWDVST-----------------------------GMCLFTLVGHDNWVRGVA 341 (406)
T ss_pred --------CCCCCccEEEeecccceEEEEeccC-----------------------------CeEEEEEecccceeeeeE
Confidence 0011346899999999999999996 446677889999999999
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000251 575 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639 (1784)
Q Consensus 575 fSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 639 (1784)
|+|.|+||+++..|++++|||+.++++.+++..|..-|+++.|+. +.-+++||+-|.++++|..
T Consensus 342 f~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 342 FSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC-CCceEEeccccceeeeeec
Confidence 999999999999999999999999999999999999999999988 5568899999999999964
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=287.50 Aligned_cols=296 Identities=18% Similarity=0.357 Sum_probs=256.2
Q ss_pred CEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCC--eeEEecCCCCceEEE
Q 000251 283 RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL--PISVLRGHTAAVTAI 360 (1784)
Q Consensus 283 ~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk--~i~~L~gH~~~VtsL 360 (1784)
-+||++|.|.+|++|...+|.+.+++....+.|..+.+.|+++.||+++.- .||+||+.++. ++.++.+|+..|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE
Confidence 478999999999999999999999999888999999999999999999864 79999998875 689999999999999
Q ss_pred EecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCC
Q 000251 361 AFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD 440 (1784)
Q Consensus 361 afSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~D 440 (1784)
.|..+|. .+++|+.||+++|||++...+...+ .+...|+++..+|+...|++|..+
T Consensus 90 gF~~dgr---WMyTgseDgt~kIWdlR~~~~qR~~---------------------~~~spVn~vvlhpnQteLis~dqs 145 (311)
T KOG0315|consen 90 GFQCDGR---WMYTGSEDGTVKIWDLRSLSCQRNY---------------------QHNSPVNTVVLHPNQTELISGDQS 145 (311)
T ss_pred EEeecCe---EEEecCCCceEEEEeccCcccchhc---------------------cCCCCcceEEecCCcceEEeecCC
Confidence 9999997 9999999999999999985543333 356789999999999999999999
Q ss_pred ceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcE
Q 000251 441 TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSA 520 (1784)
Q Consensus 441 G~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtI 520 (1784)
|.|+|||+....... ..+..-...|.++...|+| .+++.+...|..
T Consensus 146 g~irvWDl~~~~c~~--------~liPe~~~~i~sl~v~~dg--------------------------sml~a~nnkG~c 191 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTH--------ELIPEDDTSIQSLTVMPDG--------------------------SMLAAANNKGNC 191 (311)
T ss_pred CcEEEEEccCCcccc--------ccCCCCCcceeeEEEcCCC--------------------------cEEEEecCCccE
Confidence 999999997533211 1122334678899999987 689999999999
Q ss_pred EEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCC-
Q 000251 521 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG- 599 (1784)
Q Consensus 521 rIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tg- 599 (1784)
.+|++-+... .....++..+..|...+..+.+|||+++||+++.|.+++||+..+.
T Consensus 192 yvW~l~~~~~-----------------------~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 192 YVWRLLNHQT-----------------------ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred EEEEccCCCc-----------------------cccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 9999875221 0113455667889999999999999999999999999999999988
Q ss_pred ceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEc
Q 000251 600 SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFS 661 (1784)
Q Consensus 600 klv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafS 661 (1784)
++...+++|...+...+||. ++.+|++|+.|+.+++|++..++.++.+.+|....++++..
T Consensus 249 kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 77778999999999999999 88999999999999999999999999999998888777653
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=295.38 Aligned_cols=293 Identities=23% Similarity=0.392 Sum_probs=253.5
Q ss_pred eEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEEC-CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEE
Q 000251 261 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSM-ETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 339 (1784)
Q Consensus 261 k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl-~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVW 339 (1784)
.++..+.||.+.|+++.|+|+|.+||||+.|..|.+|++ ..-+....+++|.+.|..+.|.+|+..|++++.|.+|+.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 455668899999999999999999999999999999996 4455667888999999999999999999999999999999
Q ss_pred ECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000251 340 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 419 (1784)
Q Consensus 340 Dl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~ 419 (1784)
|+++|+.++.+++|...|.++. |...+..++.+++.||++++||+++...++++. ..
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~---------------------~k 174 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE---------------------NK 174 (338)
T ss_pred ecccceeeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhccc---------------------cc
Confidence 9999999999999999999998 444445688999999999999999887666552 35
Q ss_pred CceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCC
Q 000251 420 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 499 (1784)
Q Consensus 420 ~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~ 499 (1784)
.++++++|..++..+.+|+-|+.|++||++. ...+..+.||.+.|+.+..++.|
T Consensus 175 yqltAv~f~d~s~qv~sggIdn~ikvWd~r~---------~d~~~~lsGh~DtIt~lsls~~g----------------- 228 (338)
T KOG0265|consen 175 YQLTAVGFKDTSDQVISGGIDNDIKVWDLRK---------NDGLYTLSGHADTITGLSLSRYG----------------- 228 (338)
T ss_pred eeEEEEEecccccceeeccccCceeeecccc---------CcceEEeecccCceeeEEeccCC-----------------
Confidence 6799999999999999999999999999976 45678999999999999999987
Q ss_pred ccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCC----CCeeEEEE
Q 000251 500 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP----RGVNMIVW 575 (1784)
Q Consensus 500 ~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~----~~VtsVaf 575 (1784)
..+.+-+.|.++++||++.... ...++..+.++. .....++|
T Consensus 229 ---------s~llsnsMd~tvrvwd~rp~~p-------------------------~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 229 ---------SFLLSNSMDNTVRVWDVRPFAP-------------------------SQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred ---------CccccccccceEEEEEecccCC-------------------------CCceEEEeecchhhhhhhcceeec
Confidence 6899999999999999984111 111123333332 23567799
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 000251 576 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 637 (1784)
Q Consensus 576 SPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIW 637 (1784)
||+++++.+|+.|..+++||......+..+.||.+.|.+++|+| ...+|.+++.|.+|.+=
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLG 335 (338)
T ss_pred cCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEee
Confidence 99999999999999999999999999999999999999999999 66788899999999864
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-31 Score=300.93 Aligned_cols=293 Identities=18% Similarity=0.323 Sum_probs=243.8
Q ss_pred eEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEE
Q 000251 261 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---YCLASCRGHEGDITDLAVSSNNALVASASNDCIIR 337 (1784)
Q Consensus 261 k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tg---k~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIr 337 (1784)
+..++|..|++.|+-+.||++|+||||++.|.+..||.+... ++.+++.+|..+|..|.||||.++|++++.+..+.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 345678899999999999999999999999999999987543 45789999999999999999999999999999999
Q ss_pred EEECCCCCeeEEec-CCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCC
Q 000251 338 VWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 416 (1784)
Q Consensus 338 VWDl~tgk~i~~L~-gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~ 416 (1784)
+||+.+|.....+. +|...+.+++|.||+. .+++|+.|++|..||++... ..... .
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~---~~V~Gs~dr~i~~wdlDgn~-~~~W~-------------------g 351 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF---RFVTGSPDRTIIMWDLDGNI-LGNWE-------------------G 351 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCc---eeEecCCCCcEEEecCCcch-hhccc-------------------c
Confidence 99999998887764 4568899999999997 89999999999999997543 22111 0
Q ss_pred CCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCC
Q 000251 417 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 496 (1784)
Q Consensus 417 ~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~ 496 (1784)
.....|.+++.++||+++++.+.|..|++|+..+... ..+.....+|++++.+.++
T Consensus 352 vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d----------r~lise~~~its~~iS~d~-------------- 407 (519)
T KOG0293|consen 352 VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD----------RGLISEEQPITSFSISKDG-------------- 407 (519)
T ss_pred cccceeEEEEEcCCCcEEEEEecccceeeechhhhhh----------hccccccCceeEEEEcCCC--------------
Confidence 1224599999999999999999999999999864211 1134456789999999886
Q ss_pred CCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCC--eeEEE
Q 000251 497 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG--VNMIV 574 (1784)
Q Consensus 497 ~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~--VtsVa 574 (1784)
.++++.-.+..|.+||+.... ...++.+|... |-.-|
T Consensus 408 ------------k~~LvnL~~qei~LWDl~e~~-----------------------------lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 408 ------------KLALVNLQDQEIHLWDLEENK-----------------------------LVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred ------------cEEEEEcccCeeEEeecchhh-----------------------------HHHHhhcccccceEEEec
Confidence 678888889999999998422 23344455543 33334
Q ss_pred Ec-CCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000251 575 WS-LDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 641 (1784)
Q Consensus 575 fS-PDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t 641 (1784)
|- .+..++++|+.|+.|+||+..+|+++.++.||...|++|+|+|.++.++|+||.||+|+||-...
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 54 45589999999999999999999999999999999999999999999999999999999998753
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-30 Score=295.13 Aligned_cols=288 Identities=31% Similarity=0.553 Sum_probs=252.1
Q ss_pred EEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECC
Q 000251 263 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 342 (1784)
Q Consensus 263 l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~ 342 (1784)
+++|++|.+.|++++|+|++++|++++.||.|++|++.++.....+..|...+..+.|++++++|++++.+|.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 45688999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCce
Q 000251 343 DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 422 (1784)
Q Consensus 343 tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V 422 (1784)
+++.+..+..|...|.++.|++++. ++++++.+|.|.+||+.+++....+. .+...+
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~--------------------~~~~~i 138 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGR---ILSSSSRDKTIKVWDVETGKCLTTLR--------------------GHTDWV 138 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCC---EEEEecCCCeEEEEECCCcEEEEEec--------------------cCCCcE
Confidence 9888889999999999999999865 77777779999999998766444331 356679
Q ss_pred EEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccc
Q 000251 423 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 502 (1784)
Q Consensus 423 ~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~ 502 (1784)
.+++|+|++.++++++.++.|++||+.+ ...+..+..|...|.++.|++++
T Consensus 139 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~---------~~~~~~~~~~~~~i~~~~~~~~~-------------------- 189 (289)
T cd00200 139 NSVAFSPDGTFVASSSQDGTIKLWDLRT---------GKCVATLTGHTGEVNSVAFSPDG-------------------- 189 (289)
T ss_pred EEEEEcCcCCEEEEEcCCCcEEEEEccc---------cccceeEecCccccceEEECCCc--------------------
Confidence 9999999999999888899999999964 23455667888899999999886
Q ss_pred cccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEE
Q 000251 503 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 582 (1784)
Q Consensus 503 ~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~L 582 (1784)
..+++++.+|.|++||+.+.+ ....+..+...+.+++|++++.++
T Consensus 190 ------~~l~~~~~~~~i~i~d~~~~~-----------------------------~~~~~~~~~~~i~~~~~~~~~~~~ 234 (289)
T cd00200 190 ------EKLLSSSSDGTIKLWDLSTGK-----------------------------CLGTLRGHENGVNSVAFSPDGYLL 234 (289)
T ss_pred ------CEEEEecCCCcEEEEECCCCc-----------------------------eecchhhcCCceEEEEEcCCCcEE
Confidence 588888889999999998522 122233566689999999999999
Q ss_pred EEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000251 583 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638 (1784)
Q Consensus 583 aSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD 638 (1784)
++++.||.|++|++.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++|+
T Consensus 235 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 235 ASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCeEEecC
Confidence 9888899999999999999999999999999999999 677889999999999996
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-30 Score=305.09 Aligned_cols=364 Identities=19% Similarity=0.291 Sum_probs=291.1
Q ss_pred eEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEE
Q 000251 261 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 340 (1784)
Q Consensus 261 k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWD 340 (1784)
+..++|..|...|.||.|+|...+++++-.+|.|.|||.+|...++.+.-..-+|++..|-...+++++|+.|..|+||+
T Consensus 4 ~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 4 DFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEe
Confidence 34456777999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCC
Q 000251 341 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 420 (1784)
Q Consensus 341 l~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~ 420 (1784)
..+++.+..+..|...|.+|+.+|... ++++++.|-+|++||.+..-.. .....+|.+
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~P---~vLtsSDDm~iKlW~we~~wa~-------------------~qtfeGH~H 141 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTLP---YVLTSSDDMTIKLWDWENEWAC-------------------EQTFEGHEH 141 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCCC---eEEecCCccEEEEeeccCceee-------------------eeEEcCcce
Confidence 999999999999999999999999987 9999999999999999765322 223467999
Q ss_pred ceEEEEECC-CCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCC
Q 000251 421 QIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 499 (1784)
Q Consensus 421 ~V~sLafSp-dG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~ 499 (1784)
.|.+++|+| |.+.||+++-|++|+||.+.. ..+..++.+|...|+++.|-+.|
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs---------~~~nfTl~gHekGVN~Vdyy~~g----------------- 195 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGS---------PHPNFTLEGHEKGVNCVDYYTGG----------------- 195 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCC---------CCCceeeeccccCcceEEeccCC-----------------
Confidence 999999999 668999999999999999954 34567889999999999999865
Q ss_pred ccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC
Q 000251 500 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 579 (1784)
Q Consensus 500 ~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG 579 (1784)
...+|++|+.|.+|+|||..+ ..+++++.+|...|..++|+|.-
T Consensus 196 -------dkpylIsgaDD~tiKvWDyQt-----------------------------k~CV~TLeGHt~Nvs~v~fhp~l 239 (794)
T KOG0276|consen 196 -------DKPYLISGADDLTIKVWDYQT-----------------------------KSCVQTLEGHTNNVSFVFFHPEL 239 (794)
T ss_pred -------CcceEEecCCCceEEEeecch-----------------------------HHHHHHhhcccccceEEEecCCC
Confidence 235999999999999999986 34567788999999999999999
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC----------CceEE---
Q 000251 580 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE----------GIPIR--- 646 (1784)
Q Consensus 580 ~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t----------G~~l~--- 646 (1784)
..|++|+.||+++||+..+-++..++.-.-+.|+||+-.+ +...++.|...|.|.| .+-. |+.+.
T Consensus 240 piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k-~~~~i~vG~Deg~i~v-~lgreeP~vsMd~~gKIiwa~~ 317 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK-GDGKIAVGFDEGSVTV-KLGREEPAVSMDSNGKIIWAVH 317 (794)
T ss_pred cEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC-CCCeEEEeccCCcEEE-EccCCCCceeecCCccEEEEcC
Confidence 9999999999999999999999998888888999999988 4455666665555433 2211 11111
Q ss_pred ---------EEe-----------------ccCcc--eEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-ccccccceeec
Q 000251 647 ---------IYE-----------------ISRFR--LVDGKFSPDGASIILSDDVGQLYILNTGQGES-QKDAKYDQFFL 697 (1784)
Q Consensus 647 ---------tl~-----------------~~~~~--ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~-~~~~~~~~~fs 697 (1784)
+.. .+... ...++-||+|++++++++ |.-.||..-.-+. .-....+..|.
T Consensus 318 ~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcgd-GEyiIyTala~RnK~fG~~~eFvw~ 396 (794)
T KOG0276|consen 318 SEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGD-GEYIIYTALALRNKAFGSGLEFVWA 396 (794)
T ss_pred ceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecC-ccEEEEEeeehhhcccccceeEEEc
Confidence 000 01111 124678999998877664 7777776322111 11122344677
Q ss_pred CC-CcceEEccCCce
Q 000251 698 GD-YRPLVQDTYGNV 711 (1784)
Q Consensus 698 ~D-~r~Lv~d~~g~v 711 (1784)
.| ....++.+++.+
T Consensus 397 ~dsne~avRes~~~v 411 (794)
T KOG0276|consen 397 ADSNEFAVRESNGNV 411 (794)
T ss_pred CCCCeEEEEecCCce
Confidence 77 444556556654
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.2e-31 Score=295.26 Aligned_cols=295 Identities=23% Similarity=0.396 Sum_probs=253.8
Q ss_pred ccccceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCE
Q 000251 256 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCI 335 (1784)
Q Consensus 256 ~~~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGt 335 (1784)
+-..+++.+.+.||.+.|.||++.|-..+|+||+.|++|+|||+.+|++..++.||-..|..++||+-..||++++.|+.
T Consensus 137 WHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~ 216 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ 216 (460)
T ss_pred ccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCe
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCC
Q 000251 336 IRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 415 (1784)
Q Consensus 336 IrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~ 415 (1784)
|+.||++..+.++.+.||-..|.|++.+|.-. .|++|+.|.++++||+++..
T Consensus 217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld---vl~t~grDst~RvWDiRtr~------------------------- 268 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD---VLVTGGRDSTIRVWDIRTRA------------------------- 268 (460)
T ss_pred eEEEechhhhhHHHhccccceeEEEeccccce---eEEecCCcceEEEeeecccc-------------------------
Confidence 99999999999999999999999999999765 78888888887777776542
Q ss_pred CCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCC
Q 000251 416 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 495 (1784)
Q Consensus 416 ~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~ 495 (1784)
.+..+.||...|..+.+.|..
T Consensus 269 ----------------------------------------------~V~~l~GH~~~V~~V~~~~~d------------- 289 (460)
T KOG0285|consen 269 ----------------------------------------------SVHVLSGHTNPVASVMCQPTD------------- 289 (460)
T ss_pred ----------------------------------------------eEEEecCCCCcceeEEeecCC-------------
Confidence 233456777777777776542
Q ss_pred CCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEE
Q 000251 496 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 575 (1784)
Q Consensus 496 ~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf 575 (1784)
..+++||.|++|++||++.++ ....+..|...|.+++.
T Consensus 290 -------------pqvit~S~D~tvrlWDl~agk-----------------------------t~~tlt~hkksvral~l 327 (460)
T KOG0285|consen 290 -------------PQVITGSHDSTVRLWDLRAGK-----------------------------TMITLTHHKKSVRALCL 327 (460)
T ss_pred -------------CceEEecCCceEEEeeeccCc-----------------------------eeEeeecccceeeEEec
Confidence 578888888888888887533 34455668888999999
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe------
Q 000251 576 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE------ 649 (1784)
Q Consensus 576 SPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~------ 649 (1784)
+|....+|+++.| .|+-|++..|..++.+.+|...|++++... + .++++|+..|.|.+||..+|-..+.+.
T Consensus 328 hP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~ns-D-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpG 404 (460)
T KOG0285|consen 328 HPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNS-D-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPG 404 (460)
T ss_pred CCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeecc-C-ceEEEcCCceEEEEEecCcCcccccccccccCC
Confidence 9999999999987 699999999999999999999999999976 3 467799999999999999986555442
Q ss_pred --ccCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000251 650 --ISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 682 (1784)
Q Consensus 650 --~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~ 682 (1784)
.....|++.+|...|..|++|..|.+|.+|.-.
T Consensus 405 Sl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 405 SLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred ccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 123478999999999999999999999999853
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=321.02 Aligned_cols=281 Identities=25% Similarity=0.414 Sum_probs=242.0
Q ss_pred EEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEC
Q 000251 262 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 341 (1784)
Q Consensus 262 ~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl 341 (1784)
+..++..-...|+|+.|++|+.+||.|-.|..|++|.+...+ ++.+++ ...+ ..+=+.+.|-.+.+.|-
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~-~~~l---------~~~d~~sad~~~~~~D~ 438 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKD-ASDL---------SNIDTESADVDVDMLDD 438 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccccc-hhhh---------ccccccccchhhhhccc
Confidence 445565566789999999999999999999999999997553 334432 1111 12224445555777787
Q ss_pred CCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCc
Q 000251 342 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 421 (1784)
Q Consensus 342 ~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~ 421 (1784)
..+.....+.||.++|..+.|+|+.+ +|++++.|++||+|.+.+..++-.. .+|..+
T Consensus 439 ~~~~~~~~L~GH~GPVyg~sFsPd~r---fLlScSED~svRLWsl~t~s~~V~y--------------------~GH~~P 495 (707)
T KOG0263|consen 439 DSSGTSRTLYGHSGPVYGCSFSPDRR---FLLSCSEDSSVRLWSLDTWSCLVIY--------------------KGHLAP 495 (707)
T ss_pred cCCceeEEeecCCCceeeeeeccccc---ceeeccCCcceeeeecccceeEEEe--------------------cCCCcc
Confidence 77777888999999999999999987 9999999999999999987654332 468999
Q ss_pred eEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCcc
Q 000251 422 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 501 (1784)
Q Consensus 422 V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~ 501 (1784)
|+++.|+|-|-+||+++.|++.++|.... ..+++.+.+|-..|.|+.|+|+.
T Consensus 496 VwdV~F~P~GyYFatas~D~tArLWs~d~---------~~PlRifaghlsDV~cv~FHPNs------------------- 547 (707)
T KOG0263|consen 496 VWDVQFAPRGYYFATASHDQTARLWSTDH---------NKPLRIFAGHLSDVDCVSFHPNS------------------- 547 (707)
T ss_pred eeeEEecCCceEEEecCCCceeeeeeccc---------CCchhhhcccccccceEEECCcc-------------------
Confidence 99999999999999999999999999854 56788899999999999999997
Q ss_pred ccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCE
Q 000251 502 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF 581 (1784)
Q Consensus 502 ~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~ 581 (1784)
.++++||.|.+|++||+.+ +..++.+.+|..+|.+++|||+|++
T Consensus 548 -------~Y~aTGSsD~tVRlWDv~~-----------------------------G~~VRiF~GH~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 548 -------NYVATGSSDRTVRLWDVST-----------------------------GNSVRIFTGHKGPVTALAFSPCGRY 591 (707)
T ss_pred -------cccccCCCCceEEEEEcCC-----------------------------CcEEEEecCCCCceEEEEEcCCCce
Confidence 7999999999999999986 4456677899999999999999999
Q ss_pred EEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000251 582 VLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 641 (1784)
Q Consensus 582 LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t 641 (1784)
|++|+.||.|.|||+.+|.++..+.+|++.|++|.|+. ++.+||+||.|++|++||+..
T Consensus 592 LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 592 LASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEchh
Confidence 99999999999999999999999999999999999999 788999999999999999864
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=287.61 Aligned_cols=288 Identities=26% Similarity=0.439 Sum_probs=252.0
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEE
Q 000251 305 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 384 (1784)
Q Consensus 305 l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIW 384 (1784)
++++.+|.+.|++++|+|++++|++++.||.|++|++.++.....+..|...+..+.|+|++. +|++++.+|.|.+|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT---YLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCC---EEEEEcCCCeEEEE
Confidence 346778999999999999999999999999999999999988888999999999999999986 89999999999999
Q ss_pred ecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCccee
Q 000251 385 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 464 (1784)
Q Consensus 385 Dl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~ 464 (1784)
++.+++....+ ..+...+.++.|++++.++++++.+|.|.+|++.+ .....
T Consensus 79 ~~~~~~~~~~~--------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~ 129 (289)
T cd00200 79 DLETGECVRTL--------------------TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET---------GKCLT 129 (289)
T ss_pred EcCcccceEEE--------------------eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC---------cEEEE
Confidence 99876544433 13556799999999999999888899999999964 33456
Q ss_pred eecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccccccccccccc
Q 000251 465 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 544 (1784)
Q Consensus 465 ~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~ 544 (1784)
.+..|...|.++.|+|++ ..+++++.||.|.+||+.+.+
T Consensus 130 ~~~~~~~~i~~~~~~~~~--------------------------~~l~~~~~~~~i~i~d~~~~~--------------- 168 (289)
T cd00200 130 TLRGHTDWVNSVAFSPDG--------------------------TFVASSSQDGTIKLWDLRTGK--------------- 168 (289)
T ss_pred EeccCCCcEEEEEEcCcC--------------------------CEEEEEcCCCcEEEEEccccc---------------
Confidence 667899999999999874 577777779999999987422
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcE
Q 000251 545 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRI 624 (1784)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~l 624 (1784)
....+..+...|.+++|+|+++.|++++.++.|++||+.+++.+..+..|...|.+++|+| ++.+
T Consensus 169 --------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 233 (289)
T cd00200 169 --------------CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYL 233 (289)
T ss_pred --------------cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC-CCcE
Confidence 2223335667899999999999999999999999999999999999988999999999999 5788
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000251 625 AMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 680 (1784)
Q Consensus 625 LaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWd 680 (1784)
+++++.||.|++|++.++..+..+..+...|.+++|+|++.+|++++.||.|.+|+
T Consensus 234 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 234 LASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 88888899999999999999999988888999999999999999999999999995
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=310.19 Aligned_cols=301 Identities=21% Similarity=0.349 Sum_probs=256.8
Q ss_pred cccccceEEEEEccCCCCEEEEEECC-CCCEEEEEcCCcEEEEEECCC-CeEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 000251 255 TMVQKMQNIKRVRGHRNAVYCAIFDR-SGRYVITGSDDRLVKIWSMET-AYCLASCRGHEGDITDLAVSSNNALVASASN 332 (1784)
Q Consensus 255 ~~~~~~k~l~tL~GH~~~Vt~VaFSP-DG~~LATGS~DGtIkIWDl~T-gk~l~tL~gH~~~VtsLafSpDg~lLASGS~ 332 (1784)
..+-.-+.+.++.||+..|+++.|.| .+.+|++|+.|+.|+||++-. +.+++++.+|..+|.+++|+.+|..+++++.
T Consensus 199 rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 199 RCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred eeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec
Confidence 34445678899999999999999999 899999999999999999966 9999999999999999999999999999999
Q ss_pred CCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCC
Q 000251 333 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 412 (1784)
Q Consensus 333 DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~ 412 (1784)
|+.|++||+++|+++..+. ....++|+.|.|++. +.|++|+.|+.|+.||+++++.++.+.
T Consensus 279 D~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~--n~fl~G~sd~ki~~wDiRs~kvvqeYd---------------- 339 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQ--NIFLVGGSDKKIRQWDIRSGKVVQEYD---------------- 339 (503)
T ss_pred ceeeeeeccccceEEEEEe-cCCCceeeecCCCCC--cEEEEecCCCcEEEEeccchHHHHHHH----------------
Confidence 9999999999999998886 456789999999984 489999999999999999999877662
Q ss_pred CCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCC
Q 000251 413 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 492 (1784)
Q Consensus 413 ~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s 492 (1784)
.|-+.|..+.|-++|..+++.+.|++++||+.+.+-. .+.+ ...+.....++..+|++
T Consensus 340 ----~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~------ik~i--~~~~~hsmP~~~~~P~~---------- 397 (503)
T KOG0282|consen 340 ----RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP------IKNI--ADPEMHTMPCLTLHPNG---------- 397 (503)
T ss_pred ----hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc------chhh--cchhhccCcceecCCCC----------
Confidence 3677899999999999999999999999999975321 2222 22333456677888876
Q ss_pred CCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCC--CCe
Q 000251 493 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP--RGV 570 (1784)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~--~~V 570 (1784)
..+++-+.|..|.|+.+...- ......++.+|. +--
T Consensus 398 ----------------~~~~aQs~dN~i~ifs~~~~~--------------------------r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 398 ----------------KWFAAQSMDNYIAIFSTVPPF--------------------------RLNKKKRFEGHSVAGYS 435 (503)
T ss_pred ----------------CeehhhccCceEEEEeccccc--------------------------ccCHhhhhcceeccCce
Confidence 688888999999999755211 112223344443 335
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000251 571 NMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638 (1784)
Q Consensus 571 tsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD 638 (1784)
..+.|||||++|++|..||.+.+||..+-+++..+.+|...+..+.|||.....+||+|.||.|++|+
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 67899999999999999999999999999999999999999999999998889999999999999996
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=305.97 Aligned_cols=477 Identities=17% Similarity=0.186 Sum_probs=336.8
Q ss_pred ccccccccceEEEEE--ccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 000251 252 KPSTMVQKMQNIKRV--RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVAS 329 (1784)
Q Consensus 252 ~~~~~~~~~k~l~tL--~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLAS 329 (1784)
...|++.++...+.| ..-...|+|++-+++.-.||.|-.||.|+||+..++..+.++.||...|+++.|...|..||+
T Consensus 45 vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaS 124 (888)
T KOG0306|consen 45 VNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLAS 124 (888)
T ss_pred EeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEee
Confidence 345666666433333 234468999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCC
Q 000251 330 ASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 409 (1784)
Q Consensus 330 GS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~ 409 (1784)
||.|+.|.|||+-...-+..+.||...|+.+-|....+ .|++.+.|+.|++||+.+..+..+..
T Consensus 125 GskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~---~lvS~sKDs~iK~WdL~tqhCf~Thv------------- 188 (888)
T KOG0306|consen 125 GSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDS---FLVSVSKDSMIKFWDLETQHCFETHV------------- 188 (888)
T ss_pred cCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCe---EEEEeccCceEEEEecccceeeeEEe-------------
Confidence 99999999999987777889999999999999998655 89999999999999999988877763
Q ss_pred CCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCC---Ccceee-ecCCCCCceEEEEccCcccc
Q 000251 410 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQP---NHEIDV-LSGHENDVNYVQFSGCAVAS 485 (1784)
Q Consensus 410 ~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~---~~~i~~-l~gH~~~V~sLafSpdglas 485 (1784)
.|.+.++.+++.+ +.+++++.|+.++||++........... .+.... .....+....+...++
T Consensus 189 -------d~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s---- 255 (888)
T KOG0306|consen 189 -------DHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFS---- 255 (888)
T ss_pred -------cccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCc----
Confidence 4788899999987 7899999999999999933211000000 000000 0000111111111111
Q ss_pred cccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCC--------------cc------------------
Q 000251 486 RFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH--------------PK------------------ 533 (1784)
Q Consensus 486 ~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~--------------~~------------------ 533 (1784)
+.++++-+.|..+.++.+.+.... ..
T Consensus 256 ----------------------~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r 313 (888)
T KOG0306|consen 256 ----------------------DRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKR 313 (888)
T ss_pred ----------------------ccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHH
Confidence 122333333333333333221000 00
Q ss_pred -----------ccccc-----------------ccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEE
Q 000251 534 -----------AARWT-----------------QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 585 (1784)
Q Consensus 534 -----------~~~w~-----------------~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSg 585 (1784)
...|. .-+.+.. ..... ..+.......+.+|...|.++++|.+...+++|
T Consensus 314 ~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~-s~~~~-p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg 391 (888)
T KOG0306|consen 314 LETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLEN-SGKTS-PEADRTSNIEIGGHRSDVRSLCVSSDSILLASG 391 (888)
T ss_pred HHheechhheeEEEEEecCCcceeEEEeecCceEEEEecc-CCCCC-ccccccceeeeccchhheeEEEeecCceeeeec
Confidence 00000 0000000 00000 111112234567899999999999999888887
Q ss_pred ecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCC
Q 000251 586 IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGA 665 (1784)
Q Consensus 586 s~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk 665 (1784)
+. +.|+||+..++++++++... .+.+..|.| +.+++++|...|.+.|||+.+..++.++..|.+.|++++.+||++
T Consensus 392 a~-~SikiWn~~t~kciRTi~~~--y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~ 467 (888)
T KOG0306|consen 392 AG-ESIKIWNRDTLKCIRTITCG--YILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNK 467 (888)
T ss_pred CC-CcEEEEEccCcceeEEeccc--cEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCC
Confidence 64 68999999999999999743 788999999 889999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCeEEEEECCC-----Ccccc-------------ccccceeecCCCcceEEccCCceeecccccccCcCCCCC
Q 000251 666 SIILSDDVGQLYILNTGQ-----GESQK-------------DAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQD 727 (1784)
Q Consensus 666 ~LAsgs~DG~I~IWdl~s-----Ge~~~-------------~~~~~~~fs~D~r~Lv~d~~g~vld~~tql~phl~~l~~ 727 (1784)
.+++|+.|.+|++|++.- |...+ .-.....++||++.|+..--.+.+. --.+-.+.-
T Consensus 468 g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVk-----VyflDtlKF 542 (888)
T KOG0306|consen 468 GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVK-----VYFLDTLKF 542 (888)
T ss_pred ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEE-----EEEecceee
Confidence 999999999999999742 11101 1112337889999887544332111 000001111
Q ss_pred cccCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeecCCCcccccC--CCccccceeeeCCCCC
Q 000251 728 PLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMID--PLPEFIDVMDWEPENE 805 (1784)
Q Consensus 728 ~L~D~~~~p~p~~~Q~l~~~rr~~v~~iAfSPDG~~LAvg~d~s~~~~v~lw~l~~~~~li~--plp~~i~~~~wsPDg~ 805 (1784)
+..| -||.+.|.+|..|||+.+++++ +.+..+.+|.+.-++..-. ...+.+..+.|-|+.-
T Consensus 543 -------------flsL-YGHkLPV~smDIS~DSklivTg---SADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~ 605 (888)
T KOG0306|consen 543 -------------FLSL-YGHKLPVLSMDISPDSKLIVTG---SADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTH 605 (888)
T ss_pred -------------eeee-cccccceeEEeccCCcCeEEec---cCCCceEEeccccchhhhhhhcccCceeEEEEcccce
Confidence 2223 3788899999999999999999 9999999999987765533 3447778888999754
Q ss_pred cc
Q 000251 806 VQ 807 (1784)
Q Consensus 806 ~l 807 (1784)
.+
T Consensus 606 ~F 607 (888)
T KOG0306|consen 606 LF 607 (888)
T ss_pred eE
Confidence 43
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=274.89 Aligned_cols=296 Identities=15% Similarity=0.265 Sum_probs=257.7
Q ss_pred chhhhcccccccccccccceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCe--EEEEEecCCCCeEEEE
Q 000251 242 SIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY--CLASCRGHEGDITDLA 319 (1784)
Q Consensus 242 ~l~s~~~~~~~~~~~~~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk--~l~tL~gH~~~VtsLa 319 (1784)
.|.+++|+..+.-|...++.+.++++...+.|+.+.+.||++.||+|+. ..|++||+.++. ++.++.+|...|+++.
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVg 90 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVG 90 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEE
Confidence 4667889999999999999999999999999999999999999999976 579999998875 5889999999999999
Q ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCC
Q 000251 320 VSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR 399 (1784)
Q Consensus 320 fSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~ 399 (1784)
|..+|+.+++|+.||+++|||++...+-+.++ |..+|++|..+|+.. .|++|..+|.|++||+....+...+.
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQt---eLis~dqsg~irvWDl~~~~c~~~li--- 163 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQT---ELISGDQSGNIRVWDLGENSCTHELI--- 163 (311)
T ss_pred EeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcc---eEEeecCCCcEEEEEccCCccccccC---
Confidence 99999999999999999999999866555555 779999999999876 89999999999999999876655442
Q ss_pred CCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEc
Q 000251 400 PSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 479 (1784)
Q Consensus 400 ~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafS 479 (1784)
......|.+++..|||..++.+...|..++|++-... ......++..+..|.+-+..+.++
T Consensus 164 ----------------Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~---~~s~l~P~~k~~ah~~~il~C~lS 224 (311)
T KOG0315|consen 164 ----------------PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ---TASELEPVHKFQAHNGHILRCLLS 224 (311)
T ss_pred ----------------CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC---ccccceEhhheecccceEEEEEEC
Confidence 1123568999999999999999999999999996632 233455677789999999999999
Q ss_pred cCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCC
Q 000251 480 GCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 559 (1784)
Q Consensus 480 pdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~ 559 (1784)
|++ .+|+++|.|.+++||+..+- ...
T Consensus 225 Pd~--------------------------k~lat~ssdktv~iwn~~~~----------------------------~kl 250 (311)
T KOG0315|consen 225 PDV--------------------------KYLATCSSDKTVKIWNTDDF----------------------------FKL 250 (311)
T ss_pred CCC--------------------------cEEEeecCCceEEEEecCCc----------------------------eee
Confidence 997 79999999999999998851 122
Q ss_pred ceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEe
Q 000251 560 RQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH 618 (1784)
Q Consensus 560 ~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafS 618 (1784)
...+.+|...+..++||.||.||++|+.|+.+++|++..++.++.+.||.....|++..
T Consensus 251 e~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 251 ELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 34567788899999999999999999999999999999999999999998887777653
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=274.00 Aligned_cols=294 Identities=22% Similarity=0.378 Sum_probs=248.2
Q ss_pred ceEEEEEccCCCCEEEEEECCC-CCEEEEEcCCcEEEEEECCC---CeEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCC
Q 000251 260 MQNIKRVRGHRNAVYCAIFDRS-GRYVITGSDDRLVKIWSMET---AYCLASCR-GHEGDITDLAVSSNNALVASASNDC 334 (1784)
Q Consensus 260 ~k~l~tL~GH~~~Vt~VaFSPD-G~~LATGS~DGtIkIWDl~T---gk~l~tL~-gH~~~VtsLafSpDg~lLASGS~DG 334 (1784)
+-.++++.||.+.|..+||+|- |..|||+|.|..|+||+... ..+...+. +|...|+++||+|.|++||+|+.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4567889999999999999998 99999999999999999884 34444443 7999999999999999999999999
Q ss_pred EEEEEECCCC--CeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCC
Q 000251 335 IIRVWRLPDG--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 412 (1784)
Q Consensus 335 tIrVWDl~tg--k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~ 412 (1784)
++.||.-..+ +++.++.||...|.|++|+++|. +||+++.|..|-||.+..+..... .
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~---~LATCSRDKSVWiWe~deddEfec-----------------~ 143 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN---YLATCSRDKSVWIWEIDEDDEFEC-----------------I 143 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC---EEEEeeCCCeEEEEEecCCCcEEE-----------------E
Confidence 9999986554 68899999999999999999998 999999999999999875543222 2
Q ss_pred CCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCC
Q 000251 413 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 492 (1784)
Q Consensus 413 ~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s 492 (1784)
..+.+|...|..+.|+|...+|++++.|.+|++|.-.. ......+..+.+|...|.+++|.+.|
T Consensus 144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~------dddW~c~~tl~g~~~TVW~~~F~~~G---------- 207 (312)
T KOG0645|consen 144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED------DDDWECVQTLDGHENTVWSLAFDNIG---------- 207 (312)
T ss_pred eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC------CCCeeEEEEecCccceEEEEEecCCC----------
Confidence 34567999999999999999999999999999998742 34467889999999999999999987
Q ss_pred CCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeE
Q 000251 493 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 572 (1784)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 572 (1784)
..|++++.|++++||...+. ....|...+..
T Consensus 208 ----------------~rl~s~sdD~tv~Iw~~~~~---------------------------------~~~~~sr~~Y~ 238 (312)
T KOG0645|consen 208 ----------------SRLVSCSDDGTVSIWRLYTD---------------------------------LSGMHSRALYD 238 (312)
T ss_pred ----------------ceEEEecCCcceEeeeeccC---------------------------------cchhcccceEe
Confidence 69999999999999965420 01235677888
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCC------ceE-EEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000251 573 IVWSLDNRFVLAAIMDCRICVWNAADG------SLV-HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 640 (1784)
Q Consensus 573 VafSPDG~~LaSgs~DGsI~VWDl~tg------klv-~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 640 (1784)
++|. ...|++++.|+.|+||....+ +++ ..-..|...|++++|.|....+|++|+.||.|++|.+.
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9998 568999999999999987643 111 23346888999999999657889999999999999874
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=277.62 Aligned_cols=299 Identities=21% Similarity=0.306 Sum_probs=230.7
Q ss_pred CccccccccccccccCC-ccccccCCcchhhhcccccccccccccceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEE
Q 000251 216 HMYADQVRGLGLREIGG-GFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLV 294 (1784)
Q Consensus 216 ~~~~~~V~~l~~r~~Gg-~~~~~~~~~~l~s~~~~~~~~~~~~~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtI 294 (1784)
.+|.+.|.++.....+- .+...+++..+..... ...+...+.+++.|.||...|..++.++||.+.++++.|+++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L----~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKL----TSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEe----ccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 46777887776665421 2222223322222111 112455678899999999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecC--CCCceEEEEecCCCCccEEE
Q 000251 295 KIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG--HTAAVTAIAFSPRPGSVYQL 372 (1784)
Q Consensus 295 kIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~g--H~~~VtsLafSPdg~~~~~L 372 (1784)
++||+.+|+..+.|.||...|.+++|++|++.|++|+.|.+|.+|++..+ +..++.. |...|.|+.|+|+... .+|
T Consensus 88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~-p~I 165 (315)
T KOG0279|consen 88 RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESN-PII 165 (315)
T ss_pred EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCC-cEE
Confidence 99999999999999999999999999999999999999999999998654 4444433 3789999999998533 399
Q ss_pred EEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCC
Q 000251 373 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPN 452 (1784)
Q Consensus 373 aSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~ 452 (1784)
++++.|++|++||+++-+....+ .+|.+.++.+++||||.++++|+.||.+.+||++.++
T Consensus 166 vs~s~DktvKvWnl~~~~l~~~~--------------------~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 166 VSASWDKTVKVWNLRNCQLRTTF--------------------IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred EEccCCceEEEEccCCcchhhcc--------------------ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence 99999999999999987654443 3689999999999999999999999999999997532
Q ss_pred CCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCc
Q 000251 453 TDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHP 532 (1784)
Q Consensus 453 ~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~ 532 (1784)
.+ ....|...|.+++|+|+. +.++...+..|+|||+.++....
T Consensus 226 ---------~l-ysl~a~~~v~sl~fspnr---------------------------ywL~~at~~sIkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 226 ---------NL-YSLEAFDIVNSLCFSPNR---------------------------YWLCAATATSIKIWDLESKAVVE 268 (315)
T ss_pred ---------ee-EeccCCCeEeeEEecCCc---------------------------eeEeeccCCceEEEeccchhhhh
Confidence 33 345678899999999974 66666777779999999755321
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECC
Q 000251 533 KAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAA 597 (1784)
Q Consensus 533 ~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~ 597 (1784)
.. .+... ++ ..........+++||+||..|++|..|+.|++|.+.
T Consensus 269 ~l-------~~d~~-----------g~--s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 269 EL-------KLDGI-----------GP--SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hc-------ccccc-----------cc--ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 11 11110 00 111223345678999999999999999999999874
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-29 Score=301.66 Aligned_cols=368 Identities=20% Similarity=0.269 Sum_probs=289.2
Q ss_pred ccccccCCcchhhhcccccccccccccceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCC
Q 000251 233 GFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHE 312 (1784)
Q Consensus 233 ~~~~~~~~~~l~s~~~~~~~~~~~~~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~ 312 (1784)
++++|+..|.+.++..+..+.-|++.-+.++.+|.+|.++|..|+|+|++.++++|++|..|+||+..+.+++.+|.||-
T Consensus 14 glsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHl 93 (1202)
T KOG0292|consen 14 GLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHL 93 (1202)
T ss_pred ceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCccc
Q 000251 313 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 392 (1784)
Q Consensus 313 ~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l 392 (1784)
+.|+.+.|++.-.+|+|+|.|.+|+||++++++++..+.||...|.|.+|+|... .+++++-|-+|++||+..-+..
T Consensus 94 DYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED---lIVSaSLDQTVRVWDisGLRkk 170 (1202)
T KOG0292|consen 94 DYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED---LIVSASLDQTVRVWDISGLRKK 170 (1202)
T ss_pred ceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc---eEEEecccceEEEEeecchhcc
Confidence 9999999999999999999999999999999999999999999999999999776 8999999999999999754322
Q ss_pred ceeec--CCCCC-------cccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcce
Q 000251 393 PRIYI--PRPSD-------AVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 463 (1784)
Q Consensus 393 ~~i~l--~~~~~-------~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i 463 (1784)
..-.. +.... ...+..........+|...|+-++|+|.-.+|++|+.|..|++|.+...+ .-++
T Consensus 171 ~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-------aWEv 243 (1202)
T KOG0292|consen 171 NKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-------AWEV 243 (1202)
T ss_pred CCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc-------ceee
Confidence 11100 00000 00011122244567899999999999999999999999999999985432 3467
Q ss_pred eeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccc
Q 000251 464 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 543 (1784)
Q Consensus 464 ~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l 543 (1784)
.+..+|.+.|.++-|+|.. +.|++.|.|++|+|||+..++
T Consensus 244 DtcrgH~nnVssvlfhp~q--------------------------~lIlSnsEDksirVwDm~kRt-------------- 283 (1202)
T KOG0292|consen 244 DTCRGHYNNVSSVLFHPHQ--------------------------DLILSNSEDKSIRVWDMTKRT-------------- 283 (1202)
T ss_pred hhhhcccCCcceEEecCcc--------------------------ceeEecCCCccEEEEeccccc--------------
Confidence 7889999999999999975 799999999999999998533
Q ss_pred cCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCc
Q 000251 544 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 623 (1784)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~ 623 (1784)
..+.+.......+.++-+|..+++++|. |+-+.||-+.. ..++.++ + ++.
T Consensus 284 ---------------~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleR----------Erpa~~v--~--~n~ 333 (1202)
T KOG0292|consen 284 ---------------SVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLER----------ERPAYAV--N--GNG 333 (1202)
T ss_pred ---------------ceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEcc----------cCceEEE--c--CCE
Confidence 2333344566789999999999888775 44556666532 2233333 2 344
Q ss_pred EEEEEeCCCcEEEEeCCCCceE--EEEecc---CcceEEEEEcCCCCEEE-EEe-CCCeEEEEECC
Q 000251 624 IAMSAGYDGKTIVWDIWEGIPI--RIYEIS---RFRLVDGKFSPDGASII-LSD-DVGQLYILNTG 682 (1784)
Q Consensus 624 lLaSgs~DG~IrIWDl~tG~~l--~tl~~~---~~~ItslafSPDGk~LA-sgs-~DG~I~IWdl~ 682 (1784)
++.. .|..|+-+|+.+.+-+ ..+... ..++.++.++|-...+. ++. +.|..-++.+.
T Consensus 334 LfYv--kd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ip 397 (1202)
T KOG0292|consen 334 LFYV--KDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIP 397 (1202)
T ss_pred EEEE--ccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEec
Confidence 4443 3889999999885433 334322 24678899999765544 433 34455555554
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=317.60 Aligned_cols=293 Identities=31% Similarity=0.517 Sum_probs=253.9
Q ss_pred EEEEEccC-CCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEE
Q 000251 262 NIKRVRGH-RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY--CLASCRGHEGDITDLAVSSNNALVASASNDCIIRV 338 (1784)
Q Consensus 262 ~l~tL~GH-~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk--~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrV 338 (1784)
....+.+| ...|.|+.|+++|++|++++.++.|++|++.+++ .+..+.+|...|.+++|+|++++|++|+.|++|+|
T Consensus 150 ~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 150 LEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence 35666665 8899999999999999999999999999998888 78888999999999999999999999999999999
Q ss_pred EEC-CCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCC
Q 000251 339 WRL-PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 417 (1784)
Q Consensus 339 WDl-~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~ 417 (1784)
||+ ..+..++++.+|...|++++|+|+++ ++++|+.|++|+|||++++++...+ ..
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~---~i~Sgs~D~tvriWd~~~~~~~~~l--------------------~~ 286 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGN---LLVSGSDDGTVRIWDVRTGECVRKL--------------------KG 286 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCC---EEEEecCCCcEEEEeccCCeEEEee--------------------ec
Confidence 999 56689999999999999999999996 9999999999999999998876665 35
Q ss_pred CCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCC--ceEEEEccCcccccccccCCCCC
Q 000251 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND--VNYVQFSGCAVASRFSLADSSKE 495 (1784)
Q Consensus 418 h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~--V~sLafSpdglas~~~~~~s~~~ 495 (1784)
|...|++++|+++|.+|++++.|+.|+|||+.++... .+..+.++... +++++|+|++
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~~~~fsp~~------------- 346 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-------CLKLLSGAENSAPVTSVQFSPNG------------- 346 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-------eeecccCCCCCCceeEEEECCCC-------------
Confidence 8889999999999999999999999999999874311 33455555555 9999999997
Q ss_pred CCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCC---CeeE
Q 000251 496 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR---GVNM 572 (1784)
Q Consensus 496 ~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~---~Vts 572 (1784)
.+|++++.|+.+++||+..... .....+|.. .+..
T Consensus 347 -------------~~ll~~~~d~~~~~w~l~~~~~-----------------------------~~~~~~~~~~~~~~~~ 384 (456)
T KOG0266|consen 347 -------------KYLLSASLDRTLKLWDLRSGKS-----------------------------VGTYTGHSNLVRCIFS 384 (456)
T ss_pred -------------cEEEEecCCCeEEEEEccCCcc-----------------------------eeeecccCCcceeEec
Confidence 7999999999999999996432 122222332 4455
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecC-CCCeEEEEEecCCCcEEEEEe--CCCcEEEEeCC
Q 000251 573 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH-TESTYVLDVHPFNPRIAMSAG--YDGKTIVWDIW 640 (1784)
Q Consensus 573 VafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH-~~~VtsLafSPdd~~lLaSgs--~DG~IrIWDl~ 640 (1784)
..+++.+.++++|+.|+.|++|++.++..+..+.+| ...|..+.++| ...++++++ .|+.|++|...
T Consensus 385 ~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 385 PTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-TENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC-CcCeeeecCcCCCceEEEecCC
Confidence 566889999999999999999999999999999999 88999999999 778888887 78999999753
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-29 Score=296.99 Aligned_cols=523 Identities=16% Similarity=0.174 Sum_probs=337.8
Q ss_pred cccccceEEEEEccCCCCEEEEEECCCCCEEEEEc--CCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 000251 255 TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGS--DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN 332 (1784)
Q Consensus 255 ~~~~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS--~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~ 332 (1784)
....+....+.+..|..+++|||||++|+|+|||- ....++||++..-..+..|..|.-.|+|++|+|.+++|++.+.
T Consensus 63 fn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGs 142 (1080)
T KOG1408|consen 63 FNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGS 142 (1080)
T ss_pred EcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeecc
Confidence 44455666677888999999999999999999984 6778999999999899999999999999999999999997665
Q ss_pred --CCEEEEEECCCCCeeEEecCCCCceEEEEecCCCC-------------------------------------------
Q 000251 333 --DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG------------------------------------------- 367 (1784)
Q Consensus 333 --DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~------------------------------------------- 367 (1784)
|-.|.+||++.......-+ -...|..++|+.++.
T Consensus 143 QHDMIVnv~dWr~N~~~asnk-iss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~ 221 (1080)
T KOG1408|consen 143 QHDMIVNVNDWRVNSSGASNK-ISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFL 221 (1080)
T ss_pred ccceEEEhhhhhhcccccccc-cceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhh
Confidence 4455666543211100000 011122222222211
Q ss_pred -----------------------------------------------ccEEEEEEeCCCcEEEEecCCCcccceeecCCC
Q 000251 368 -----------------------------------------------SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 400 (1784)
Q Consensus 368 -----------------------------------------------~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~ 400 (1784)
+..++++|+.+|+|++|+..+.....++..+..
T Consensus 222 avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~ha 301 (1080)
T KOG1408|consen 222 AVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHA 301 (1080)
T ss_pred hhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccc
Confidence 012677888888888888777666555533222
Q ss_pred CCcccCCCCCC----CCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEE
Q 000251 401 SDAVAGRNMAP----SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 476 (1784)
Q Consensus 401 ~~~~~g~~~~~----~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sL 476 (1784)
...-......+ .......--...++.|++....|.+...|..|+|||++..+. ......+..|...|+.|
T Consensus 302 lg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~k------vgk~~s~lyHS~ciW~V 375 (1080)
T KOG1408|consen 302 LGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNK------VGKCSSMLYHSACIWDV 375 (1080)
T ss_pred cccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccccc------ccceeeeeeccceeeee
Confidence 11100000001 011111122345778999999999999999999999986432 22345667899999999
Q ss_pred EEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccccccc-ccccccCCCCC-----C
Q 000251 477 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT-QAYHLKVPPPP-----M 550 (1784)
Q Consensus 477 afSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~-~~~~l~~~~~~-----~ 550 (1784)
...|...-.. ...-.....|++|+.|++|++|++....-.....+-. ..-.++.+... +
T Consensus 376 e~~p~nv~~~---------------~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~ 440 (1080)
T KOG1408|consen 376 ENLPCNVHSP---------------TAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIM 440 (1080)
T ss_pred ccccccccCc---------------ccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhh
Confidence 8777431100 0001113469999999999999998522110000000 00000000000 0
Q ss_pred CC--CCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecC--CCcEEE
Q 000251 551 PP--QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPF--NPRIAM 626 (1784)
Q Consensus 551 ~~--~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPd--d~~lLa 626 (1784)
.. ................++.+++.||+|++||+|..-|.|+||++..-+....+..|...|.|+.|+-- ..++||
T Consensus 441 ~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLA 520 (1080)
T KOG1408|consen 441 HDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLA 520 (1080)
T ss_pred hhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhh
Confidence 00 00001112233445567999999999999999999999999999999999999999999999999742 347999
Q ss_pred EEeCCCcEEEEeCCCC-ceEEEEeccCcceEEEEEcCCC--CEEEEEeCCCeEEEEECC---CC--------cccccccc
Q 000251 627 SAGYDGKTIVWDIWEG-IPIRIYEISRFRLVDGKFSPDG--ASIILSDDVGQLYILNTG---QG--------ESQKDAKY 692 (1784)
Q Consensus 627 Sgs~DG~IrIWDl~tG-~~l~tl~~~~~~ItslafSPDG--k~LAsgs~DG~I~IWdl~---sG--------e~~~~~~~ 692 (1784)
+++.|..|.|+|+... .++.++.+|...|++++|.-.| ..+++++.|..|++=-.. .| ..-+...|
T Consensus 521 SasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlY 600 (1080)
T KOG1408|consen 521 SASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLY 600 (1080)
T ss_pred hccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEE
Confidence 9999999999999643 5677888888889999988877 667777777655432211 12 22234456
Q ss_pred ceeecCCCcceEEcc---CCceeecccccccCcCCCCCcccCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeC
Q 000251 693 DQFFLGDYRPLVQDT---YGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPD 769 (1784)
Q Consensus 693 ~~~fs~D~r~Lv~d~---~g~vld~~tql~phl~~l~~~L~D~~~~p~p~~~Q~l~~~rr~~v~~iAfSPDG~~LAvg~d 769 (1784)
+....|....+++.. +-++++.+.. .....|--+ +++.-....+...|.|.|||+.
T Consensus 601 Dm~Vdp~~k~v~t~cQDrnirif~i~sg-----Kq~k~FKgs--------------~~~eG~lIKv~lDPSgiY~atS-- 659 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVCQDRNIRIFDIESG-----KQVKSFKGS--------------RDHEGDLIKVILDPSGIYLATS-- 659 (1080)
T ss_pred EeeeCCCcceEEEEecccceEEEecccc-----ceeeeeccc--------------ccCCCceEEEEECCCccEEEEe--
Confidence 777777777666433 3334432211 111111100 0111123356679999999999
Q ss_pred CCCCCceEeecCCCcccccC--CCccccceeeeCCCCCcccCCCCCcccccccC
Q 000251 770 FSLDQGYQLQPLADLDVMID--PLPEFIDVMDWEPENEVQSDDNDSEYNVAEEY 821 (1784)
Q Consensus 770 ~s~~~~v~lw~l~~~~~li~--plp~~i~~~~wsPDg~~ls~~~~s~~~~~e~~ 821 (1784)
..+..+-+++..+++.+.. ...++++.|-|++|=+.|-....++.+.-|-.
T Consensus 660 -csdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 660 -CSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred -ecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence 8899999999999987754 45789999999999888776666666665543
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=285.56 Aligned_cols=321 Identities=19% Similarity=0.287 Sum_probs=268.2
Q ss_pred chhhhcccccccccccccceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEc
Q 000251 242 SIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVS 321 (1784)
Q Consensus 242 ~l~s~~~~~~~~~~~~~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafS 321 (1784)
.+++.+.+-..-.|...++..+..+.||...|+|+.||.||.+||||..+|.|+||...+|.....+...-..|.-|.|+
T Consensus 78 l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WH 157 (399)
T KOG0296|consen 78 LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWH 157 (399)
T ss_pred eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEec
Confidence 34444443334456677788899999999999999999999999999999999999999999999887777889999999
Q ss_pred CCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCC
Q 000251 322 SNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 401 (1784)
Q Consensus 322 pDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~ 401 (1784)
|-+.+|+.|+.||.|.+|.+.++...+.+.||..++++=.|.|+|+ .++++..||+|++|++.+++.+..+..
T Consensus 158 p~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK---r~~tgy~dgti~~Wn~ktg~p~~~~~~---- 230 (399)
T KOG0296|consen 158 PRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK---RILTGYDDGTIIVWNPKTGQPLHKITQ---- 230 (399)
T ss_pred ccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc---eEEEEecCceEEEEecCCCceeEEecc----
Confidence 9999999999999999999999889999999999999999999998 899999999999999999987666531
Q ss_pred CcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccC
Q 000251 402 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 481 (1784)
Q Consensus 402 ~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpd 481 (1784)
.......++.++..+..++.|..++.+++-+..+++......+ ........+...+.+|.+.|.
T Consensus 231 ---------------~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~-~~~~l~~~~e~~~esve~~~~ 294 (399)
T KOG0296|consen 231 ---------------AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG-TVPELKPSQEELDESVESIPS 294 (399)
T ss_pred ---------------cccCcCCccccccccceeEeccCCccEEEEccccceEEEecCC-CCccccccchhhhhhhhhccc
Confidence 1133467888899999999999999999888876654322221 122233456666777777654
Q ss_pred cccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCce
Q 000251 482 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 561 (1784)
Q Consensus 482 glas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~ 561 (1784)
... -.+.++|+-||+|.|||+...+ .+
T Consensus 295 ss~-----------------------lpL~A~G~vdG~i~iyD~a~~~------------------------------~R 321 (399)
T KOG0296|consen 295 SSK-----------------------LPLAACGSVDGTIAIYDLAAST------------------------------LR 321 (399)
T ss_pred ccc-----------------------cchhhcccccceEEEEecccch------------------------------hh
Confidence 310 1478899999999999998522 23
Q ss_pred eccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000251 562 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 640 (1784)
Q Consensus 562 ~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 640 (1784)
....|..+|+.+.|-+ ..+|++++.+|.|++||.++|+++.++.||...|.+++++| +.++++|++.|++.+||++.
T Consensus 322 ~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 322 HICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 4456888899999999 78999999999999999999999999999999999999999 78899999999999999874
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=298.84 Aligned_cols=285 Identities=19% Similarity=0.290 Sum_probs=250.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCc
Q 000251 311 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 390 (1784)
Q Consensus 311 H~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~ 390 (1784)
-...|..|.|.|+|+.|++|+..|.+.+|+..+-..-..++.|..+|.++.|++++. ++++|+.+|.|++|+..-..
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~---wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGT---WMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCC---EEEEcCCCceEEecccchhh
Confidence 346799999999999999999999999999755444455689999999999999997 99999999999999986443
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCC
Q 000251 391 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 470 (1784)
Q Consensus 391 ~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~ 470 (1784)
.. .+ ...|...|.+++|+|+...|++++.||+|+|||...+ ++-..+.+|.
T Consensus 172 Vk-~~-------------------~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~---------kee~vL~GHg 222 (464)
T KOG0284|consen 172 VK-II-------------------QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP---------KEERVLRGHG 222 (464)
T ss_pred hH-Hh-------------------hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC---------chhheeccCC
Confidence 21 11 1235588999999999999999999999999999653 3445679999
Q ss_pred CCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCC
Q 000251 471 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 550 (1784)
Q Consensus 471 ~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~ 550 (1784)
-.|.++.|+|.. ..|++|+.|..|++||.++
T Consensus 223 wdVksvdWHP~k--------------------------gLiasgskDnlVKlWDprS----------------------- 253 (464)
T KOG0284|consen 223 WDVKSVDWHPTK--------------------------GLIASGSKDNLVKLWDPRS----------------------- 253 (464)
T ss_pred CCcceeccCCcc--------------------------ceeEEccCCceeEeecCCC-----------------------
Confidence 999999999975 6899999999999999996
Q ss_pred CCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeC
Q 000251 551 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY 630 (1784)
Q Consensus 551 ~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~ 630 (1784)
+.++..+..|...|..+.|++++.+|++++.|..++++|+++.+.+.++++|...|++++|||-...+|++||.
T Consensus 254 ------g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~ 327 (464)
T KOG0284|consen 254 ------GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGS 327 (464)
T ss_pred ------cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccC
Confidence 44566778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCceEEEEe-ccCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000251 631 DGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 682 (1784)
Q Consensus 631 DG~IrIWDl~tG~~l~tl~-~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~ 682 (1784)
||.|..|.+...+++..+. .|...|++++|+|=|.+||+|+.|.++++|.-.
T Consensus 328 Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 328 DGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred CCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 9999999998566655554 677899999999999999999999999999753
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-29 Score=289.75 Aligned_cols=288 Identities=18% Similarity=0.319 Sum_probs=251.8
Q ss_pred CCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEe
Q 000251 271 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 350 (1784)
Q Consensus 271 ~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L 350 (1784)
..|++|+|+.+|..||+|+.||.++||+.. |.++.+|..|.++|.+|.|+..|++|++++.|+++.+||..+|.....+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence 579999999999999999999999999965 7888999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCC
Q 000251 351 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 430 (1784)
Q Consensus 351 ~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpd 430 (1784)
.-|..+-..|.|-.+. .|++.+.||.|+++.+.....+.++ .+|.+.|.++.|+|.
T Consensus 315 ~~~s~~~lDVdW~~~~----~F~ts~td~~i~V~kv~~~~P~~t~--------------------~GH~g~V~alk~n~t 370 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSND----EFATSSTDGCIHVCKVGEDRPVKTF--------------------IGHHGEVNALKWNPT 370 (524)
T ss_pred eeccCCccceEEecCc----eEeecCCCceEEEEEecCCCcceee--------------------ecccCceEEEEECCC
Confidence 9899887889998876 6999999999999998766544443 459999999999999
Q ss_pred CCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCe
Q 000251 431 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 510 (1784)
Q Consensus 431 G~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~ 510 (1784)
|.+|++++.|++++||++.. ......+.+|...|..+.|+|.+-. ......+..
T Consensus 371 g~LLaS~SdD~TlkiWs~~~---------~~~~~~l~~Hskei~t~~wsp~g~v-----------------~~n~~~~~~ 424 (524)
T KOG0273|consen 371 GSLLASCSDDGTLKIWSMGQ---------SNSVHDLQAHSKEIYTIKWSPTGPV-----------------TSNPNMNLM 424 (524)
T ss_pred CceEEEecCCCeeEeeecCC---------CcchhhhhhhccceeeEeecCCCCc-----------------cCCCcCCce
Confidence 99999999999999999854 3356678899999999999998721 011122458
Q ss_pred EEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCe
Q 000251 511 IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCR 590 (1784)
Q Consensus 511 LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGs 590 (1784)
+++++.|++|++||+.. +.++..+..|..+|.+++|||+|+|+|+|+.||.
T Consensus 425 l~sas~dstV~lwdv~~-----------------------------gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~ 475 (524)
T KOG0273|consen 425 LASASFDSTVKLWDVES-----------------------------GVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC 475 (524)
T ss_pred EEEeecCCeEEEEEccC-----------------------------CceeEeeccCCCceEEEEecCCCcEEEecCCCCe
Confidence 99999999999999985 4566677889999999999999999999999999
Q ss_pred EEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000251 591 ICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 640 (1784)
Q Consensus 591 I~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 640 (1784)
|.||+..++++++.+.+. +.|..|+|+..+ ..|..+-.||.+++-|+.
T Consensus 476 V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G-~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 476 VHIWSTKTGKLVKSYQGT-GGIFELCWNAAG-DKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEeccccchheeEeecCC-CeEEEEEEcCCC-CEEEEEecCCCceEEEec
Confidence 999999999999999864 459999999955 566666679999999874
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=287.53 Aligned_cols=290 Identities=21% Similarity=0.329 Sum_probs=261.9
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEE
Q 000251 303 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 382 (1784)
Q Consensus 303 k~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIr 382 (1784)
.+.+.+.+|...|+.+-|.|+-.++|+++.|++|++||..+|+....++||+..|..|+|+..|+ +|++++.|=.+.
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk---~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGK---YLATCSSDLSAK 175 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCcc---EEEecCCccchh
Confidence 34566778999999999999999999999999999999999999999999999999999999987 999999999999
Q ss_pred EEecCCC-cccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCc
Q 000251 383 IWDARYS-QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 461 (1784)
Q Consensus 383 IWDl~tg-~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~ 461 (1784)
+||..+- +++. ...+|...|.+++|-|.|.+|++++.|.+|+.|++.+ +.
T Consensus 176 LWd~~~~~~c~k--------------------s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t---------g~ 226 (406)
T KOG0295|consen 176 LWDFDTFFRCIK--------------------SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT---------GY 226 (406)
T ss_pred heeHHHHHHHHH--------------------HhcCcccceeeEEEEecCCeeeecccccceeEEeccc---------ce
Confidence 9999763 2221 2346888999999999999999999999999999976 56
Q ss_pred ceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccc
Q 000251 462 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 541 (1784)
Q Consensus 462 ~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~ 541 (1784)
++.++.+|...|..+..+.+| ..+++|+.|.++++|-+.+++
T Consensus 227 cv~t~~~h~ewvr~v~v~~DG--------------------------ti~As~s~dqtl~vW~~~t~~------------ 268 (406)
T KOG0295|consen 227 CVKTFPGHSEWVRMVRVNQDG--------------------------TIIASCSNDQTLRVWVVATKQ------------ 268 (406)
T ss_pred eEEeccCchHhEEEEEecCCe--------------------------eEEEecCCCceEEEEEeccch------------
Confidence 789999999999999999887 689999999999999887632
Q ss_pred cccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcC---------------CCCEEEEEecCCeEEEEECCCCceEEEEe
Q 000251 542 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL---------------DNRFVLAAIMDCRICVWNAADGSLVHSLT 606 (1784)
Q Consensus 542 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP---------------DG~~LaSgs~DGsI~VWDl~tgklv~~L~ 606 (1784)
+...+..|..+|-+++|.| .+.++++++.|++|++||+.+|.++.+|.
T Consensus 269 -----------------~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ 331 (406)
T KOG0295|consen 269 -----------------CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV 331 (406)
T ss_pred -----------------hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe
Confidence 2344556778888888866 24699999999999999999999999999
Q ss_pred cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000251 607 GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 680 (1784)
Q Consensus 607 gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWd 680 (1784)
||...|..++|+| +++||+|+..|++++|||+.+++|.+++..|..-++++.|..+-.++++|+-|..+++|.
T Consensus 332 ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 332 GHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred cccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999996
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=311.87 Aligned_cols=281 Identities=20% Similarity=0.311 Sum_probs=238.4
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEE
Q 000251 304 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383 (1784)
Q Consensus 304 ~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrI 383 (1784)
+..++..-...++|+.|++|+++||.|..|..|++|.+... .++.+++ ..+.. .+=+.+.|-.+.+
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~-------~~~l~------~~d~~sad~~~~~ 435 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKD-------ASDLS------NIDTESADVDVDM 435 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccc-------hhhhc------cccccccchhhhh
Confidence 34455555678999999999999999999999999998644 3333331 11221 1223344444555
Q ss_pred EecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcce
Q 000251 384 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 463 (1784)
Q Consensus 384 WDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i 463 (1784)
.|-..+....+ ..+|.++|..+.|+|+.++|++++.|++||+|.+.+ ...+
T Consensus 436 ~D~~~~~~~~~--------------------L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t---------~s~~ 486 (707)
T KOG0263|consen 436 LDDDSSGTSRT--------------------LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT---------WSCL 486 (707)
T ss_pred ccccCCceeEE--------------------eecCCCceeeeeecccccceeeccCCcceeeeeccc---------ceeE
Confidence 55544432222 347999999999999999999999999999999976 5567
Q ss_pred eeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccc
Q 000251 464 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 543 (1784)
Q Consensus 464 ~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l 543 (1784)
....||..+|+.+.|+|.| -+|||+|.|++.++|....
T Consensus 487 V~y~GH~~PVwdV~F~P~G--------------------------yYFatas~D~tArLWs~d~---------------- 524 (707)
T KOG0263|consen 487 VIYKGHLAPVWDVQFAPRG--------------------------YYFATASHDQTARLWSTDH---------------- 524 (707)
T ss_pred EEecCCCcceeeEEecCCc--------------------------eEEEecCCCceeeeeeccc----------------
Confidence 7889999999999999987 5999999999999997763
Q ss_pred cCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCc
Q 000251 544 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 623 (1784)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~ 623 (1784)
..+.+.+.+|...|.|+.|+|+..|+++|+.|.+|++||+.+|..++.|.||.++|++|+||| +++
T Consensus 525 -------------~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~Gr 590 (707)
T KOG0263|consen 525 -------------NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-CGR 590 (707)
T ss_pred -------------CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-CCc
Confidence 456677889999999999999999999999999999999999999999999999999999999 899
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000251 624 IAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 683 (1784)
Q Consensus 624 lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~s 683 (1784)
+|++|+.||.|+|||+.+|.++..+.+|.+.|.++.||.||..||+|+.|..|.+||+..
T Consensus 591 ~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 591 YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 999999999999999999999999999999999999999999999999999999999864
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=294.57 Aligned_cols=282 Identities=21% Similarity=0.360 Sum_probs=243.1
Q ss_pred CCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeE
Q 000251 269 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 348 (1784)
Q Consensus 269 H~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~ 348 (1784)
-...|..|.|.|+|++|++|+..|.+.+|+..+......+..|...|+++.|++++.+++||+.+|.|++|+..- ..+.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk 173 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVK 173 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhH
Confidence 346799999999999999999999999999855444444568999999999999999999999999999999643 4445
Q ss_pred EecCCC-CceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEE
Q 000251 349 VLRGHT-AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 427 (1784)
Q Consensus 349 ~L~gH~-~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLaf 427 (1784)
.+.+|. ..|++++|+|+.. .|++++.||+|+|||....+.... +.+|...|.|++|
T Consensus 174 ~~~ahh~eaIRdlafSpnDs---kF~t~SdDg~ikiWdf~~~kee~v--------------------L~GHgwdVksvdW 230 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDS---KFLTCSDDGTIKIWDFRMPKEERV--------------------LRGHGWDVKSVDW 230 (464)
T ss_pred HhhHhhhhhhheeccCCCCc---eeEEecCCCeEEEEeccCCchhhe--------------------eccCCCCcceecc
Confidence 555554 8999999999776 899999999999999986653332 2578899999999
Q ss_pred CCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCcccccccc
Q 000251 428 NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 507 (1784)
Q Consensus 428 SpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~ 507 (1784)
+|...+||+|+.|..|++||.++ +.++..+.+|...|..+.|++++
T Consensus 231 HP~kgLiasgskDnlVKlWDprS---------g~cl~tlh~HKntVl~~~f~~n~------------------------- 276 (464)
T KOG0284|consen 231 HPTKGLIASGSKDNLVKLWDPRS---------GSCLATLHGHKNTVLAVKFNPNG------------------------- 276 (464)
T ss_pred CCccceeEEccCCceeEeecCCC---------cchhhhhhhccceEEEEEEcCCC-------------------------
Confidence 99999999999999999999987 45788899999999999999987
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC-CEEEEEe
Q 000251 508 HDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN-RFVLAAI 586 (1784)
Q Consensus 508 ~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG-~~LaSgs 586 (1784)
++|+++|.|..++++|+++ ...+..+.+|...|++++|+|-. .+|.+|+
T Consensus 277 -N~Llt~skD~~~kv~DiR~-----------------------------mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg 326 (464)
T KOG0284|consen 277 -NWLLTGSKDQSCKVFDIRT-----------------------------MKELFTYRGHKKDVTSLTWHPLNESLFTSGG 326 (464)
T ss_pred -CeeEEccCCceEEEEehhH-----------------------------hHHHHHhhcchhhheeeccccccccceeecc
Confidence 7999999999999999985 23455667899999999999965 5677899
Q ss_pred cCCeEEEEECCCCceEEEE-ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000251 587 MDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639 (1784)
Q Consensus 587 ~DGsI~VWDl~tgklv~~L-~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 639 (1784)
.||.|..|.+..-+++..+ .+|...|++++|+| -+.+|++|+.|.++++|.-
T Consensus 327 ~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 327 SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHILATGSNDRTVRFWTR 379 (464)
T ss_pred CCCceEEEeccccccccCCCcccccceeeeeccc-cceeEeecCCCcceeeecc
Confidence 9999999999855555544 47999999999999 7899999999999999975
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=292.58 Aligned_cols=295 Identities=18% Similarity=0.258 Sum_probs=264.9
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEe
Q 000251 306 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 385 (1784)
Q Consensus 306 ~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWD 385 (1784)
+++..++..|.++.|+|....++++-.+|.|.||+.++...++.+.-..-+|.+..|-+..+ .+++|+.|..|++|+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRkn---Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKN---WIVTGSDDMQIRVFN 83 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccc---eEEEecCCceEEEEe
Confidence 34556889999999999999999999999999999999999999998889999999999765 999999999999999
Q ss_pred cCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceee
Q 000251 386 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 465 (1784)
Q Consensus 386 l~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~ 465 (1784)
..++..+..+. .|...|.|++.+|...++++++.|-+|++||... ...+.+.
T Consensus 84 ynt~ekV~~Fe--------------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~--------~wa~~qt 135 (794)
T KOG0276|consen 84 YNTGEKVKTFE--------------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN--------EWACEQT 135 (794)
T ss_pred cccceeeEEee--------------------ccccceeeeeecCCCCeEEecCCccEEEEeeccC--------ceeeeeE
Confidence 99998776663 5899999999999999999999999999999964 3778899
Q ss_pred ecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccC
Q 000251 466 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKV 545 (1784)
Q Consensus 466 l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~ 545 (1784)
+.||+.-|..++|+|.. .+.+++++-|++|+||.+.+
T Consensus 136 feGH~HyVMqv~fnPkD-------------------------~ntFaS~sLDrTVKVWslgs------------------ 172 (794)
T KOG0276|consen 136 FEGHEHYVMQVAFNPKD-------------------------PNTFASASLDRTVKVWSLGS------------------ 172 (794)
T ss_pred EcCcceEEEEEEecCCC-------------------------ccceeeeeccccEEEEEcCC------------------
Confidence 99999999999999975 47999999999999998874
Q ss_pred CCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC--CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCc
Q 000251 546 PPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN--RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 623 (1784)
Q Consensus 546 ~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG--~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~ 623 (1784)
..+..++.+|..+|+||.|-+.| .+|++|+.|.+|+|||.++..|+++|.||...|..+.|+| .--
T Consensus 173 -----------~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp-~lp 240 (794)
T KOG0276|consen 173 -----------PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP-ELP 240 (794)
T ss_pred -----------CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC-CCc
Confidence 34556778999999999998755 6999999999999999999999999999999999999999 667
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 000251 624 IAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 687 (1784)
Q Consensus 624 lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~~ 687 (1784)
+++||+.||+|+||+..+-++..++.-+-.+|++++-.+.+..+++|.+.|.| +..++.+++.
T Consensus 241 iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i-~v~lgreeP~ 303 (794)
T KOG0276|consen 241 IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSV-TVKLGREEPA 303 (794)
T ss_pred EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcE-EEEccCCCCc
Confidence 88999999999999999999999998888999999999999999998887766 4466665554
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=287.43 Aligned_cols=278 Identities=23% Similarity=0.458 Sum_probs=240.3
Q ss_pred CCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeE
Q 000251 269 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 348 (1784)
Q Consensus 269 H~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~ 348 (1784)
....|+|+.+. ...+++|..|.+|+|||..+..+++.+.||++.|.|+.| +.+.|++|+.|.+|+|||+++|+++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhh
Confidence 45789999996 447999999999999999999999999999999999999 56799999999999999999999999
Q ss_pred EecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEC
Q 000251 349 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 428 (1784)
Q Consensus 349 ~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafS 428 (1784)
++.+|...|..+.|+.. ++++++.|.+|.+||+.....+.. .....+|...|+.+.|+
T Consensus 272 tlihHceaVLhlrf~ng-----~mvtcSkDrsiaVWdm~sps~it~-----------------rrVLvGHrAaVNvVdfd 329 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSNG-----YMVTCSKDRSIAVWDMASPTDITL-----------------RRVLVGHRAAVNVVDFD 329 (499)
T ss_pred HHhhhcceeEEEEEeCC-----EEEEecCCceeEEEeccCchHHHH-----------------HHHHhhhhhheeeeccc
Confidence 99999999999999874 899999999999999976542211 12245688889999995
Q ss_pred CCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccC
Q 000251 429 ANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 508 (1784)
Q Consensus 429 pdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~ 508 (1784)
.++|++++.|.+|++|++.+ ...+.++.+|...|-|+++..
T Consensus 330 --~kyIVsASgDRTikvW~~st---------~efvRtl~gHkRGIAClQYr~---------------------------- 370 (499)
T KOG0281|consen 330 --DKYIVSASGDRTIKVWSTST---------CEFVRTLNGHKRGIACLQYRD---------------------------- 370 (499)
T ss_pred --cceEEEecCCceEEEEeccc---------eeeehhhhcccccceehhccC----------------------------
Confidence 45999999999999999976 557889999999999998863
Q ss_pred CeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecC
Q 000251 509 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD 588 (1784)
Q Consensus 509 ~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~D 588 (1784)
..+++|+.|.+|++||+.. +.....+.+|..-|.++.| |.+.|++|+.|
T Consensus 371 rlvVSGSSDntIRlwdi~~-----------------------------G~cLRvLeGHEeLvRciRF--d~krIVSGaYD 419 (499)
T KOG0281|consen 371 RLVVSGSSDNTIRLWDIEC-----------------------------GACLRVLEGHEELVRCIRF--DNKRIVSGAYD 419 (499)
T ss_pred eEEEecCCCceEEEEeccc-----------------------------cHHHHHHhchHHhhhheee--cCceeeecccc
Confidence 5899999999999999985 4455667889999999998 57799999999
Q ss_pred CeEEEEECCCCc---------eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000251 589 CRICVWNAADGS---------LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 645 (1784)
Q Consensus 589 GsI~VWDl~tgk---------lv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l 645 (1784)
|+|+|||+.++. ++.++..|++.|..+.| +...++++++|.+|.|||+.++-+-
T Consensus 420 GkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF---D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 420 GKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF---DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ceEEEEecccccCCcccccchHHHhhhhccceeEEEee---cceEEEeccCCCeEEEEEcCCCCcc
Confidence 999999998764 44566779999999999 4577889999999999999877544
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-28 Score=322.36 Aligned_cols=290 Identities=20% Similarity=0.324 Sum_probs=237.1
Q ss_pred EccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCC----e----EEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCEE
Q 000251 266 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA----Y----CLASCRGHEGDITDLAVSS-NNALVASASNDCII 336 (1784)
Q Consensus 266 L~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tg----k----~l~tL~gH~~~VtsLafSp-Dg~lLASGS~DGtI 336 (1784)
+.+|.+.|++++|+|+|++||+|+.|+.|+||++.+. . .+..+. +...|.+++|++ ++.+||+++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997532 1 223333 356899999987 47899999999999
Q ss_pred EEEECCCCCeeEEecCCCCceEEEEecC-CCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCC
Q 000251 337 RVWRLPDGLPISVLRGHTAAVTAIAFSP-RPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 415 (1784)
Q Consensus 337 rVWDl~tgk~i~~L~gH~~~VtsLafSP-dg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~ 415 (1784)
+|||+.+++.+..+.+|.+.|++++|+| ++. +|++|+.||+|++||+.++..+..+.
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~---~L~Sgs~Dg~v~iWd~~~~~~~~~~~------------------- 615 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPT---LLASGSDDGSVKLWSINQGVSIGTIK------------------- 615 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCC---EEEEEcCCCEEEEEECCCCcEEEEEe-------------------
Confidence 9999999999999999999999999997 555 89999999999999999877654442
Q ss_pred CCCCCceEEEEEC-CCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCC
Q 000251 416 GPQSHQIFCCAFN-ANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 494 (1784)
Q Consensus 416 ~~h~~~V~sLafS-pdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~ 494 (1784)
+...|.++.|+ ++|.+|++|+.||.|++||+++.. ..+..+.+|...|.++.|.+ +
T Consensus 616 --~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~--------~~~~~~~~h~~~V~~v~f~~-~------------ 672 (793)
T PLN00181 616 --TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK--------LPLCTMIGHSKTVSYVRFVD-S------------ 672 (793)
T ss_pred --cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC--------ccceEecCCCCCEEEEEEeC-C------------
Confidence 12458899995 579999999999999999996532 23456779999999999973 2
Q ss_pred CCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEE
Q 000251 495 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 574 (1784)
Q Consensus 495 ~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 574 (1784)
..|++++.|++|+|||+..... .....+...+.+|...+.+++
T Consensus 673 --------------~~lvs~s~D~~ikiWd~~~~~~-----------------------~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 673 --------------STLVSSSTDNTLKLWDLSMSIS-----------------------GINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred --------------CEEEEEECCCEEEEEeCCCCcc-----------------------ccCCcceEEEcCCCCCeeEEE
Confidence 5899999999999999874210 001234456677888899999
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCceEEEE-------------ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000251 575 WSLDNRFVLAAIMDCRICVWNAADGSLVHSL-------------TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639 (1784)
Q Consensus 575 fSPDG~~LaSgs~DGsI~VWDl~tgklv~~L-------------~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 639 (1784)
|++++.+|++|+.|+.|+||+...+..+..+ ..|...|.+++|+| ++.+|++|+.||.|+||++
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 9999999999999999999998766544322 23456799999999 6778889999999999996
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=262.54 Aligned_cols=287 Identities=24% Similarity=0.376 Sum_probs=233.5
Q ss_pred eEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEE
Q 000251 261 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 340 (1784)
Q Consensus 261 k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWD 340 (1784)
+.++.|.+|.++|.++.|+-||+|.+|++.|.+|++|+...|.+++++.+|...|.+++.+.|+..+++|+.|..|.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCC
Q 000251 341 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 420 (1784)
Q Consensus 341 l~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~ 420 (1784)
+.+|+.++.+.+|.+.|+.++|..+.. .+++|+.|.+|++||.+.....+. ..+....
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesS---Vv~SgsfD~s~r~wDCRS~s~ePi------------------Qildea~- 145 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESS---VVASGSFDSSVRLWDCRSRSFEPI------------------QILDEAK- 145 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcce---EEEeccccceeEEEEcccCCCCcc------------------chhhhhc-
Confidence 999999999999999999999999876 899999999999999876542111 1111112
Q ss_pred ceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCc
Q 000251 421 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 500 (1784)
Q Consensus 421 ~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~ 500 (1784)
..|.+|..+.
T Consensus 146 --------------------------------------------------D~V~Si~v~~-------------------- 155 (307)
T KOG0316|consen 146 --------------------------------------------------DGVSSIDVAE-------------------- 155 (307)
T ss_pred --------------------------------------------------CceeEEEecc--------------------
Confidence 2233333321
Q ss_pred cccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC
Q 000251 501 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 580 (1784)
Q Consensus 501 ~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 580 (1784)
..|++|+.||+++.||++.+... ..-...+|++++||+||+
T Consensus 156 --------heIvaGS~DGtvRtydiR~G~l~-------------------------------sDy~g~pit~vs~s~d~n 196 (307)
T KOG0316|consen 156 --------HEIVAGSVDGTVRTYDIRKGTLS-------------------------------SDYFGHPITSVSFSKDGN 196 (307)
T ss_pred --------cEEEeeccCCcEEEEEeecceee-------------------------------hhhcCCcceeEEecCCCC
Confidence 35566666666666666642210 011235799999999999
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEE--ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcc-eEE
Q 000251 581 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV--HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR-LVD 657 (1784)
Q Consensus 581 ~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLaf--SPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~-Its 657 (1784)
.+++++.|++|++.|-.+|+++..+.||.+.-+.+.. .. ....+++|+.||.|.+||+.++..+..+..+... |.+
T Consensus 197 c~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q-sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~d 275 (307)
T KOG0316|consen 197 CSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ-SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTD 275 (307)
T ss_pred EEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc-cceeEEeccCCceEEEEEeccceeeeeeccCCceeEEe
Confidence 9999999999999999999999999999887665543 33 4468889999999999999999999999877766 789
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEE
Q 000251 658 GKFSPDGASIILSDDVGQLYILN 680 (1784)
Q Consensus 658 lafSPDGk~LAsgs~DG~I~IWd 680 (1784)
+.++|.-..|+++...+ +..|-
T Consensus 276 l~~hp~~~~f~~A~~~~-~~~~~ 297 (307)
T KOG0316|consen 276 LSCHPTMDDFITATGHG-DLFWY 297 (307)
T ss_pred eecccCccceeEecCCc-eecee
Confidence 99999988888776644 44443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=317.68 Aligned_cols=303 Identities=15% Similarity=0.279 Sum_probs=244.7
Q ss_pred CcEEEEEECCCCeEEEEE-----ecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCC----C----eeEEecCCCCce
Q 000251 291 DRLVKIWSMETAYCLASC-----RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG----L----PISVLRGHTAAV 357 (1784)
Q Consensus 291 DGtIkIWDl~Tgk~l~tL-----~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg----k----~i~~L~gH~~~V 357 (1784)
+|.+++|+..+......+ ..|.+.|++++|+|+|++||+|+.|+.|+||++.+. . ++..+. +...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 678999998876665443 358999999999999999999999999999997532 1 233333 35689
Q ss_pred EEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECC-CCCEEEE
Q 000251 358 TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVT 436 (1784)
Q Consensus 358 tsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSp-dG~~Las 436 (1784)
.+++|++... .+|++++.||+|++||+.+++.+..+ ..|...|++++|+| ++.+|++
T Consensus 536 ~~l~~~~~~~--~~las~~~Dg~v~lWd~~~~~~~~~~--------------------~~H~~~V~~l~~~p~~~~~L~S 593 (793)
T PLN00181 536 SGICWNSYIK--SQVASSNFEGVVQVWDVARSQLVTEM--------------------KEHEKRVWSIDYSSADPTLLAS 593 (793)
T ss_pred eeEEeccCCC--CEEEEEeCCCeEEEEECCCCeEEEEe--------------------cCCCCCEEEEEEcCCCCCEEEE
Confidence 9999998643 28999999999999999887654443 35788899999997 7899999
Q ss_pred eeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeC
Q 000251 437 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR 516 (1784)
Q Consensus 437 Gs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~ 516 (1784)
|+.||.|++||+.++ ..+..+..+ ..|.++.|.+.. +..|++|+.
T Consensus 594 gs~Dg~v~iWd~~~~---------~~~~~~~~~-~~v~~v~~~~~~-------------------------g~~latgs~ 638 (793)
T PLN00181 594 GSDDGSVKLWSINQG---------VSIGTIKTK-ANICCVQFPSES-------------------------GRSLAFGSA 638 (793)
T ss_pred EcCCCEEEEEECCCC---------cEEEEEecC-CCeEEEEEeCCC-------------------------CCEEEEEeC
Confidence 999999999999753 234445444 578899986432 268999999
Q ss_pred CCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEEC
Q 000251 517 DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 596 (1784)
Q Consensus 517 DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl 596 (1784)
||.|++||+++.. .+...+.+|...|.++.|. ++.+|++++.|+.|+|||+
T Consensus 639 dg~I~iwD~~~~~----------------------------~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 639 DHKVYYYDLRNPK----------------------------LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred CCeEEEEECCCCC----------------------------ccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeC
Confidence 9999999987522 1223445788899999997 7889999999999999999
Q ss_pred CC------CceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-------------ccCcceEE
Q 000251 597 AD------GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE-------------ISRFRLVD 657 (1784)
Q Consensus 597 ~t------gklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~-------------~~~~~Its 657 (1784)
.. +.++..+.+|...+.+++|+| ++.+|++|+.||.|+||+...+.++..+. .+...|.+
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence 74 367889999999999999999 56799999999999999987765554332 12345899
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEC
Q 000251 658 GKFSPDGASIILSDDVGQLYILNT 681 (1784)
Q Consensus 658 lafSPDGk~LAsgs~DG~I~IWdl 681 (1784)
++|+|+|.+|++|+.+|.|+||++
T Consensus 769 v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999999986
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=292.76 Aligned_cols=328 Identities=20% Similarity=0.345 Sum_probs=274.3
Q ss_pred EEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCC
Q 000251 265 RVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 344 (1784)
Q Consensus 265 tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg 344 (1784)
.|..-+..|..++|+|...+++++-..|.|++||..-+.++..|..|.++|+.|+|+|.+.+++||+.|-.|+||+..+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 35556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEE
Q 000251 345 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC 424 (1784)
Q Consensus 345 k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~s 424 (1784)
+++.++.||-..|..+.|++.-. .+++++.|.+|+||++.+++++..+ .+|.+.|.|
T Consensus 84 rclftL~GHlDYVRt~~FHheyP---WIlSASDDQTIrIWNwqsr~~iavl--------------------tGHnHYVMc 140 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHHEYP---WILSASDDQTIRIWNWQSRKCIAVL--------------------TGHNHYVMC 140 (1202)
T ss_pred eehhhhccccceeEEeeccCCCc---eEEEccCCCeEEEEeccCCceEEEE--------------------ecCceEEEe
Confidence 99999999999999999999876 9999999999999999999887766 369999999
Q ss_pred EEECCCCCEEEEeeCCceEEEEcCCCCCCC---CC---------------C-C-CCcceeeecCCCCCceEEEEccCccc
Q 000251 425 CAFNANGTVFVTGSSDTLARVWNACKPNTD---DS---------------D-Q-PNHEIDVLSGHENDVNYVQFSGCAVA 484 (1784)
Q Consensus 425 LafSpdG~~LasGs~DG~IrVWDl~tg~~~---~s---------------~-~-~~~~i~~l~gH~~~V~sLafSpdgla 484 (1784)
..|+|....+++++-|.+|+|||+..-... .. . + ..-....+.||...|+.++|.|..
T Consensus 141 AqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-- 218 (1202)
T KOG0292|consen 141 AQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-- 218 (1202)
T ss_pred eccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc--
Confidence 999999999999999999999998432110 00 0 0 011224678999999999999875
Q ss_pred ccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceecc
Q 000251 485 SRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 564 (1784)
Q Consensus 485 s~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~ 564 (1784)
..|++|+.|..|++|.+...+ ........
T Consensus 219 ------------------------pliVSG~DDRqVKlWrmnetK---------------------------aWEvDtcr 247 (1202)
T KOG0292|consen 219 ------------------------PLIVSGADDRQVKLWRMNETK---------------------------AWEVDTCR 247 (1202)
T ss_pred ------------------------ceEEecCCcceeeEEEecccc---------------------------ceeehhhh
Confidence 699999999999999887411 22344567
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 000251 565 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 644 (1784)
Q Consensus 565 ~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~ 644 (1784)
+|...|.++.|+|...+|++.+.|++|+|||+...+.+++++...+..+.++.+| ...++ .+++|+-+.||.++..++
T Consensus 248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP-~lNLf-AAgHDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHP-ELNLF-AAGHDSGMIVFKLERERP 325 (1202)
T ss_pred cccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecC-Cccee-eeecCCceEEEEEcccCc
Confidence 8999999999999999999999999999999999999999988888899999999 55555 567898899998865444
Q ss_pred EEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 000251 645 IRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 685 (1784)
Q Consensus 645 l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe 685 (1784)
...+. +..|...- +..|+-+|+.+.+
T Consensus 326 a~~v~--------------~n~LfYvk-d~~i~~~d~~t~~ 351 (1202)
T KOG0292|consen 326 AYAVN--------------GNGLFYVK-DRFIRSYDLRTQK 351 (1202)
T ss_pred eEEEc--------------CCEEEEEc-cceEEeeeccccc
Confidence 33222 22333333 5667777776643
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=289.87 Aligned_cols=436 Identities=17% Similarity=0.213 Sum_probs=340.6
Q ss_pred cccccccccccceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EE
Q 000251 249 AIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA-LV 327 (1784)
Q Consensus 249 ~~~~~~~~~~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~-lL 327 (1784)
......|.+.+.+.+.+++++...|+++.=+|-=..+|.|..+|+|.|+++..++.+.+++...+.|++++|..||. +|
T Consensus 181 ~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~l 260 (910)
T KOG1539|consen 181 QGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLL 260 (910)
T ss_pred CCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeE
Confidence 33445678889999999999999999999999999999999999999999999999999995569999999999998 66
Q ss_pred EEEeCCCEEEEEECCCCCeeEEec-CCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccC
Q 000251 328 ASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAG 406 (1784)
Q Consensus 328 ASGS~DGtIrVWDl~tgk~i~~L~-gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g 406 (1784)
|+|+..|.+.+||++..+.+..+. .|.+.|..+.|.|... .|++++.|..+++|=.+++.-.+++
T Consensus 261 as~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep---Vl~ta~~DnSlk~~vfD~~dg~pR~----------- 326 (910)
T KOG1539|consen 261 ASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP---VLVTAGADNSLKVWVFDSGDGVPRL----------- 326 (910)
T ss_pred EeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc---eEeeccCCCceeEEEeeCCCCcchh-----------
Confidence 778888999999999888777665 7989999999999876 9999999999999977765543333
Q ss_pred CCCCCCCCCCCCCCceEEEEEC-CCCCEEEEeeCCceEEEEcCCCCCCCCCCCC------Cccee---eecCCCCCceEE
Q 000251 407 RNMAPSSSAGPQSHQIFCCAFN-ANGTVFVTGSSDTLARVWNACKPNTDDSDQP------NHEID---VLSGHENDVNYV 476 (1784)
Q Consensus 407 ~~~~~~~s~~~h~~~V~sLafS-pdG~~LasGs~DG~IrVWDl~tg~~~~s~~~------~~~i~---~l~gH~~~V~sL 476 (1784)
.....+|..+..|+.|. .+|.++.+++.|++.+.+++........... .+.+. .....-.+|..+
T Consensus 327 -----LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~f 401 (910)
T KOG1539|consen 327 -----LRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEF 401 (910)
T ss_pred -----eeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceee
Confidence 22345789999999998 6899999999999999998854221111100 00000 111112334444
Q ss_pred EEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCC
Q 000251 477 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 556 (1784)
Q Consensus 477 afSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~ 556 (1784)
++...- ...| .+.+++.-.+..++.|+++.... +.|.- .
T Consensus 402 a~~~~R-------------------E~~W--~Nv~~~h~~~~~~~tW~~~n~~~----G~~~L----~------------ 440 (910)
T KOG1539|consen 402 AFENAR-------------------EKEW--DNVITAHKGKRSAYTWNFRNKTS----GRHVL----D------------ 440 (910)
T ss_pred ecccch-------------------hhhh--cceeEEecCcceEEEEeccCccc----ccEEe----c------------
Confidence 443211 1122 34556666778899999986331 11110 0
Q ss_pred CCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEE---ecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 000251 557 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL---TGHTESTYVLDVHPFNPRIAMSAGYDGK 633 (1784)
Q Consensus 557 ~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L---~gH~~~VtsLafSPdd~~lLaSgs~DG~ 633 (1784)
..++......+++++.+++|++.+.|+..|.|-+|++++|-....+ ..|.++|++++..- -++.+++++.+|.
T Consensus 441 ---~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gi 516 (910)
T KOG1539|consen 441 ---PKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGI 516 (910)
T ss_pred ---CccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcce
Confidence 0111124467899999999999999999999999999999999988 58999999999976 5678999999999
Q ss_pred EEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccccceeecCCCcceEEccCCceee
Q 000251 634 TIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLD 713 (1784)
Q Consensus 634 IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~~~~~~~~~~fs~D~r~Lv~d~~g~vld 713 (1784)
+++||..++.++..+. -...+..+..+.....+|++.+|-.|.++|+.+.+.+
T Consensus 517 lkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv-------------------------- 569 (910)
T KOG1539|consen 517 LKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV-------------------------- 569 (910)
T ss_pred EEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh--------------------------
Confidence 9999999999888887 4456788888989999999999999999998764322
Q ss_pred cccccccCcCCCCCcccCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeecCCCcccccC--CC
Q 000251 714 QETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMID--PL 791 (1784)
Q Consensus 714 ~~tql~phl~~l~~~L~D~~~~p~p~~~Q~l~~~rr~~v~~iAfSPDG~~LAvg~d~s~~~~v~lw~l~~~~~li~--pl 791 (1784)
+.+.||...+..++|||||+||+++ +.+..+++|++.++..+ + .+
T Consensus 570 -----------------------------R~f~gh~nritd~~FS~DgrWlisa---smD~tIr~wDlpt~~lI-D~~~v 616 (910)
T KOG1539|consen 570 -----------------------------REFWGHGNRITDMTFSPDGRWLISA---SMDSTIRTWDLPTGTLI-DGLLV 616 (910)
T ss_pred -----------------------------HHhhccccceeeeEeCCCCcEEEEe---ecCCcEEEEeccCccee-eeEec
Confidence 2234556677899999999999999 99999999999988754 4 45
Q ss_pred ccccceeeeCCCCCccc
Q 000251 792 PEFIDVMDWEPENEVQS 808 (1784)
Q Consensus 792 p~~i~~~~wsPDg~~ls 808 (1784)
+.....|.|+|.|.+|+
T Consensus 617 d~~~~sls~SPngD~LA 633 (910)
T KOG1539|consen 617 DSPCTSLSFSPNGDFLA 633 (910)
T ss_pred CCcceeeEECCCCCEEE
Confidence 77788999999999998
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-29 Score=282.11 Aligned_cols=276 Identities=24% Similarity=0.405 Sum_probs=239.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCc
Q 000251 311 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 390 (1784)
Q Consensus 311 H~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~ 390 (1784)
....|.|+.+ |...+++|..|.+|+|||..+-.++..+.||++.|.|+.|... .|++|+.|.+|++||+.+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r-----viisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER-----VIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce-----EEEecCCCceEEEEeccCCc
Confidence 4567999988 5668999999999999999999999999999999999999763 89999999999999999999
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCC
Q 000251 391 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 470 (1784)
Q Consensus 391 ~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~ 470 (1784)
++.++. .|...|..+.|+. .++++++.|.+|.|||+..+. .......+.||.
T Consensus 269 ~l~tli--------------------hHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps------~it~rrVLvGHr 320 (499)
T KOG0281|consen 269 PLNTLI--------------------HHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPT------DITLRRVLVGHR 320 (499)
T ss_pred hhhHHh--------------------hhcceeEEEEEeC--CEEEEecCCceeEEEeccCch------HHHHHHHHhhhh
Confidence 877763 4778899999973 489999999999999997543 244567889999
Q ss_pred CCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCC
Q 000251 471 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 550 (1784)
Q Consensus 471 ~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~ 550 (1784)
..|+.+.|+. .++++++.|.+|++|++.+
T Consensus 321 AaVNvVdfd~----------------------------kyIVsASgDRTikvW~~st----------------------- 349 (499)
T KOG0281|consen 321 AAVNVVDFDD----------------------------KYIVSASGDRTIKVWSTST----------------------- 349 (499)
T ss_pred hheeeecccc----------------------------ceEEEecCCceEEEEeccc-----------------------
Confidence 9999999973 5999999999999999986
Q ss_pred CCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeC
Q 000251 551 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY 630 (1784)
Q Consensus 551 ~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~ 630 (1784)
...+..+.+|..+|-|+.+ .|+++++|+.|.+|++||+..|.+++.++||..-|.++.| +..-+++|++
T Consensus 350 ------~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF---d~krIVSGaY 418 (499)
T KOG0281|consen 350 ------CEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAY 418 (499)
T ss_pred ------eeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee---cCceeeeccc
Confidence 3345667789999988876 7899999999999999999999999999999999999999 4467789999
Q ss_pred CCcEEEEeCCCCc---------eEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 000251 631 DGKTIVWDIWEGI---------PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 685 (1784)
Q Consensus 631 DG~IrIWDl~tG~---------~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe 685 (1784)
||+|+|||+.++. |+.++..|.+.|..+.|. ...|++++.|.+|.|||+-.|-
T Consensus 419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred cceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCC
Confidence 9999999998763 455566788899999985 5678999999999999997653
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=301.48 Aligned_cols=291 Identities=26% Similarity=0.409 Sum_probs=251.9
Q ss_pred EEEec-CCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCC--eeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEE
Q 000251 306 ASCRG-HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 382 (1784)
Q Consensus 306 ~tL~g-H~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk--~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIr 382 (1784)
..+.+ |...|.++.|+++|++|++++.++.|++|++.++. .+..+.+|...|.+++|+|++. ++++++.|++|+
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~---~l~s~s~D~tir 228 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS---YLLSGSDDKTLR 228 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc---EEEEecCCceEE
Confidence 34444 47889999999999999999999999999998877 7788889999999999999998 999999999999
Q ss_pred EEecC-CCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCc
Q 000251 383 IWDAR-YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 461 (1784)
Q Consensus 383 IWDl~-tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~ 461 (1784)
+||+. .+..+.++ .+|...|++++|+|+|+++++|+.|++|+|||+++ +.
T Consensus 229 iwd~~~~~~~~~~l--------------------~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~---------~~ 279 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTL--------------------KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT---------GE 279 (456)
T ss_pred EeeccCCCeEEEEe--------------------cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC---------Ce
Confidence 99994 33444444 46899999999999999999999999999999976 45
Q ss_pred ceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccc
Q 000251 462 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 541 (1784)
Q Consensus 462 ~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~ 541 (1784)
.+..+.+|.+.|++++|++++ ..|++++.||.|+|||+.++...
T Consensus 280 ~~~~l~~hs~~is~~~f~~d~--------------------------~~l~s~s~d~~i~vwd~~~~~~~---------- 323 (456)
T KOG0266|consen 280 CVRKLKGHSDGISGLAFSPDG--------------------------NLLVSASYDGTIRVWDLETGSKL---------- 323 (456)
T ss_pred EEEeeeccCCceEEEEECCCC--------------------------CEEEEcCCCccEEEEECCCCcee----------
Confidence 788999999999999999987 79999999999999999974411
Q ss_pred cccCCCCCCCCCCCCCCCceeccCCCC--CeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeE---EEE
Q 000251 542 HLKVPPPPMPPQPPRGGPRQRILPTPR--GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTY---VLD 616 (1784)
Q Consensus 542 ~l~~~~~~~~~~~~~~~~~~~l~~h~~--~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~Vt---sLa 616 (1784)
....+..+.. .+++++|+|++.+|++++.|+.+++||+..+..+..+.+|...+. +..
T Consensus 324 -----------------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 324 -----------------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred -----------------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 1112222322 589999999999999999999999999999999999999988643 334
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEecc-CcceEEEEEcCCCCEEEEEe--CCCeEEEEECC
Q 000251 617 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS-RFRLVDGKFSPDGASIILSD--DVGQLYILNTG 682 (1784)
Q Consensus 617 fSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~-~~~ItslafSPDGk~LAsgs--~DG~I~IWdl~ 682 (1784)
.++ ++.++++|+.|+.|++|++.++..+..+.+| ...+..+.|+|...++++++ .|+.|++|...
T Consensus 387 ~~~-~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 387 LST-GGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccC-CCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 455 7889999999999999999999999999988 78899999999999999987 78999999753
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-28 Score=275.57 Aligned_cols=291 Identities=19% Similarity=0.293 Sum_probs=244.5
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCC---CeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcE
Q 000251 305 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 381 (1784)
Q Consensus 305 l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg---k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtI 381 (1784)
.+.+..|...|+-+.||++|++||+++.|.+..+|.+... +...++.+|..+|..|.||||.. +|++++.|..+
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr---yLlaCg~~e~~ 293 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR---YLLACGFDEVL 293 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC---eEEecCchHhe
Confidence 4556789999999999999999999999999999987544 44778899999999999999987 99999999999
Q ss_pred EEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCc
Q 000251 382 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 461 (1784)
Q Consensus 382 rIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~ 461 (1784)
.+||+.+|.+...+. .++...+.+++|.|||..|++|+.|+.|..||+.. .
T Consensus 294 ~lwDv~tgd~~~~y~-------------------~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg----------n 344 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYP-------------------SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG----------N 344 (519)
T ss_pred eeccCCcchhhhhcc-------------------cCcCCCcceeEEccCCceeEecCCCCcEEEecCCc----------c
Confidence 999999998665542 12456789999999999999999999999999953 1
Q ss_pred ceeeecCC-CCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccccccccc
Q 000251 462 EIDVLSGH-ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 540 (1784)
Q Consensus 462 ~i~~l~gH-~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~ 540 (1784)
.+....+- ...|.+++..++| ..+++...|..|++++..+...
T Consensus 345 ~~~~W~gvr~~~v~dlait~Dg--------------------------k~vl~v~~d~~i~l~~~e~~~d---------- 388 (519)
T KOG0293|consen 345 ILGNWEGVRDPKVHDLAITYDG--------------------------KYVLLVTVDKKIRLYNREARVD---------- 388 (519)
T ss_pred hhhcccccccceeEEEEEcCCC--------------------------cEEEEEecccceeeechhhhhh----------
Confidence 22223322 2568999999987 6888888999999998875221
Q ss_pred ccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeE--EEEEe
Q 000251 541 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTY--VLDVH 618 (1784)
Q Consensus 541 ~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~Vt--sLafS 618 (1784)
..+.....+|+++++|.||+++++.-.+..|++||+....+++.+.||...-+ .-+|-
T Consensus 389 --------------------r~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg 448 (519)
T KOG0293|consen 389 --------------------RGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG 448 (519)
T ss_pred --------------------hccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence 11344567899999999999999999999999999999999999999976533 33454
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCC-CEEEEEeCCCeEEEEECCC
Q 000251 619 PFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDG-ASIILSDDVGQLYILNTGQ 683 (1784)
Q Consensus 619 Pdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDG-k~LAsgs~DG~I~IWdl~s 683 (1784)
-.+..++++|+.|+.|+||+..+|+++..+.+|...|.+++|+|.. .++|++++||+|+||....
T Consensus 449 g~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 4345899999999999999999999999999999999999999965 5788999999999998753
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=287.97 Aligned_cols=291 Identities=19% Similarity=0.305 Sum_probs=251.7
Q ss_pred CeEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCEEEEEECCC-CCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCC
Q 000251 302 AYCLASCRGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG 379 (1784)
Q Consensus 302 gk~l~tL~gH~~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~t-gk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DG 379 (1784)
.+.+.++.||...|+++.|.| .+.+|++++.|+.|+||++-. +.+++++.+|..+|.+++|++++. .|++++.|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~---~fLS~sfD~ 280 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT---SFLSASFDR 280 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC---eeeeeecce
Confidence 356778899999999999999 889999999999999999876 899999999999999999999997 899999999
Q ss_pred cEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCC-CEEEEeeCCceEEEEcCCCCCCCCCCC
Q 000251 380 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQ 458 (1784)
Q Consensus 380 tIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG-~~LasGs~DG~IrVWDl~tg~~~~s~~ 458 (1784)
.|++||+++|+++.++.. ...++|+.|.|++ +.|++|+.|+.|+.||+++
T Consensus 281 ~lKlwDtETG~~~~~f~~---------------------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-------- 331 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHL---------------------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-------- 331 (503)
T ss_pred eeeeeccccceEEEEEec---------------------CCCceeeecCCCCCcEEEEecCCCcEEEEeccc--------
Confidence 999999999999888753 4458899999998 8999999999999999987
Q ss_pred CCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccccccc
Q 000251 459 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 538 (1784)
Q Consensus 459 ~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~ 538 (1784)
+..++.+..|-+.|..+.|-+.+ ..+++.+.|++++||+....-.+.
T Consensus 332 -~kvvqeYd~hLg~i~~i~F~~~g--------------------------~rFissSDdks~riWe~~~~v~ik------ 378 (503)
T KOG0282|consen 332 -GKVVQEYDRHLGAILDITFVDEG--------------------------RRFISSSDDKSVRIWENRIPVPIK------ 378 (503)
T ss_pred -hHHHHHHHhhhhheeeeEEccCC--------------------------ceEeeeccCccEEEEEcCCCccch------
Confidence 44677888999999999999987 799999999999999887422110
Q ss_pred ccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCC---ceEEEEecCCC--CeE
Q 000251 539 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG---SLVHSLTGHTE--STY 613 (1784)
Q Consensus 539 ~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tg---klv~~L~gH~~--~Vt 613 (1784)
.....+.....++..+|++.++++-+.|+.|.++.+... .....+.||.. --.
T Consensus 379 ----------------------~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 379 ----------------------NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC 436 (503)
T ss_pred ----------------------hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence 011122344678899999999999999999999997543 23346778854 355
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCC-CEEEEEeCCCeEEEEE
Q 000251 614 VLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDG-ASIILSDDVGQLYILN 680 (1784)
Q Consensus 614 sLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDG-k~LAsgs~DG~I~IWd 680 (1784)
.+.||| ++.+|++|+.||.+.+||..+-+++..+..|...++.+.|+|-. ..||+++.+|.|++|+
T Consensus 437 ~v~fSp-DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 437 QVDFSP-DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEcC-CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 689999 88899999999999999999999999999999999999999975 5788899999999996
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=268.31 Aligned_cols=314 Identities=22% Similarity=0.365 Sum_probs=250.2
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcE
Q 000251 302 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 381 (1784)
Q Consensus 302 gk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtI 381 (1784)
.++.+.+.+|.++|.|+++.|.+.++++|+.|++|+|||+.+|++..++.||-..|..+++|+-.. ||++++.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHp---YlFs~gedk~V 217 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHP---YLFSAGEDKQV 217 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCc---eEEEecCCCee
Confidence 456677889999999999999999999999999999999999999999999999999999999876 99999999999
Q ss_pred EEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCc
Q 000251 382 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 461 (1784)
Q Consensus 382 rIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~ 461 (1784)
+.||+...+.+... .+|-..|.|++.+|.-..|++|+.|.+++|||
T Consensus 218 KCwDLe~nkvIR~Y--------------------hGHlS~V~~L~lhPTldvl~t~grDst~RvWD-------------- 263 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHY--------------------HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWD-------------- 263 (460)
T ss_pred EEEechhhhhHHHh--------------------ccccceeEEEeccccceeEEecCCcceEEEee--------------
Confidence 99999877655443 23555566666655555555555555555554
Q ss_pred ceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccc
Q 000251 462 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 541 (1784)
Q Consensus 462 ~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~ 541 (1784)
+++
T Consensus 264 ---------------------------------------------------------------iRt-------------- 266 (460)
T KOG0285|consen 264 ---------------------------------------------------------------IRT-------------- 266 (460)
T ss_pred ---------------------------------------------------------------ecc--------------
Confidence 443
Q ss_pred cccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCC
Q 000251 542 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 621 (1784)
Q Consensus 542 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd 621 (1784)
...+..+.+|...|..+.+.|-...+++|+.|++|++||+..|+...++..|...|.+++.+| .
T Consensus 267 ---------------r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP-~ 330 (460)
T KOG0285|consen 267 ---------------RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP-K 330 (460)
T ss_pred ---------------cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCC-c
Confidence 122344567889999999999999999999999999999999999999999999999999999 7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccccceeecCCCc
Q 000251 622 PRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYR 701 (1784)
Q Consensus 622 ~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~~~~~~~~~~fs~D~r 701 (1784)
...+|+++.| .|+-|++..|..+..+.+|..-|.+++...|| ++++|++.|.|.+||..+|-..+..
T Consensus 331 e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~----------- 397 (460)
T KOG0285|consen 331 ENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRG----------- 397 (460)
T ss_pred hhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccc-----------
Confidence 7888898877 59999999999999999999999999998887 6778889999999999887443321
Q ss_pred ceEEccCCceeecccccccCcCCCCCcccCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeecC
Q 000251 702 PLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPL 781 (1784)
Q Consensus 702 ~Lv~d~~g~vld~~tql~phl~~l~~~L~D~~~~p~p~~~Q~l~~~rr~~v~~iAfSPDG~~LAvg~d~s~~~~v~lw~l 781 (1784)
++...|... .+..++.+.+|...|..|.++ ..+..+.+|.-
T Consensus 398 -------------~t~vqpGSl-----------------------~sEagI~as~fDktg~rlit~---eadKtIk~~ke 438 (460)
T KOG0285|consen 398 -------------QTIVQPGSL-----------------------ESEAGIFASCFDKTGSRLITG---EADKTIKMYKE 438 (460)
T ss_pred -------------cccccCCcc-----------------------ccccceeEEeecccCceEEec---cCCcceEEEec
Confidence 111111111 123567889999999999999 88999999976
Q ss_pred CCcccccCCCccccceeeeCCC
Q 000251 782 ADLDVMIDPLPEFIDVMDWEPE 803 (1784)
Q Consensus 782 ~~~~~li~plp~~i~~~~wsPD 803 (1784)
.+.. .++-. .+.|-|+
T Consensus 439 De~a-----T~Eth-Pl~w~P~ 454 (460)
T KOG0285|consen 439 DEHA-----TEETH-PLNWKPE 454 (460)
T ss_pred cccc-----CcccC-CcCCCCc
Confidence 3221 12211 2677776
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-27 Score=256.02 Aligned_cols=294 Identities=19% Similarity=0.279 Sum_probs=242.7
Q ss_pred eEEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCEEEEEECCCC---CeeEEe-cCCCCceEEEEecCCCCccEEEEEEeC
Q 000251 303 YCLASCRGHEGDITDLAVSSN-NALVASASNDCIIRVWRLPDG---LPISVL-RGHTAAVTAIAFSPRPGSVYQLLSSSD 377 (1784)
Q Consensus 303 k~l~tL~gH~~~VtsLafSpD-g~lLASGS~DGtIrVWDl~tg---k~i~~L-~gH~~~VtsLafSPdg~~~~~LaSgs~ 377 (1784)
..++.+.+|.+.|..+||+|- |..||+|+.|..|+||+...+ .+...+ .+|+..|.+++|+|.++ +|++|+.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~---~La~aSF 81 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR---YLASASF 81 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc---EEEEeec
Confidence 346778899999999999998 889999999999999998753 333344 47999999999999998 9999999
Q ss_pred CCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCC
Q 000251 378 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 457 (1784)
Q Consensus 378 DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~ 457 (1784)
|+++.||.-..+.+.. ...+.+|...|.|++|+++|.+||+++.|..|-||.+.. .
T Consensus 82 D~t~~Iw~k~~~efec------------------v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de------d 137 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFEC------------------VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE------D 137 (312)
T ss_pred cceEEEeecCCCceeE------------------EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC------C
Confidence 9999999876655432 223467899999999999999999999999999999853 3
Q ss_pred CCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccc
Q 000251 458 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 537 (1784)
Q Consensus 458 ~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w 537 (1784)
.....+..+..|...|..+.|+|.. ++|++++.|.+|++|.-..
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~--------------------------dlL~S~SYDnTIk~~~~~~---------- 181 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTE--------------------------DLLFSCSYDNTIKVYRDED---------- 181 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCc--------------------------ceeEEeccCCeEEEEeecC----------
Confidence 4467788999999999999999975 7999999999999997552
Q ss_pred cccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEE
Q 000251 538 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 617 (1784)
Q Consensus 538 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLaf 617 (1784)
...-...+.+.+|...|.+++|++.|..|++++.|++|+||-..+.- -.-|...++.++|
T Consensus 182 ----------------dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W 241 (312)
T KOG0645|consen 182 ----------------DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPW 241 (312)
T ss_pred ----------------CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeee
Confidence 11234566778888899999999999999999999999999965321 1237788999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCC------ceEE-EEeccCcceEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q 000251 618 HPFNPRIAMSAGYDGKTIVWDIWEG------IPIR-IYEISRFRLVDGKFSPD-GASIILSDDVGQLYILNTG 682 (1784)
Q Consensus 618 SPdd~~lLaSgs~DG~IrIWDl~tG------~~l~-tl~~~~~~ItslafSPD-Gk~LAsgs~DG~I~IWdl~ 682 (1784)
. .-+|+|++.|+.|+|+.-..+ .++. .-..|...|.+++|.|. ..+|+++++||.|.+|.+.
T Consensus 242 ~---~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 242 D---NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred c---ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 6 457899999999999987643 1111 22356678999999995 6789999999999999864
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=269.22 Aligned_cols=288 Identities=23% Similarity=0.387 Sum_probs=247.5
Q ss_pred cCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEe--------cCCCCeEEEEEcCCCCEEEEEeCCCEEEEE
Q 000251 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR--------GHEGDITDLAVSSNNALVASASNDCIIRVW 339 (1784)
Q Consensus 268 GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~--------gH~~~VtsLafSpDg~lLASGS~DGtIrVW 339 (1784)
|..+.+-|..|||||+||++|+.||-|.|||..+|++.+.++ -+...|.|+.|+.|..+||+|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 667889999999999999999999999999999998766543 478899999999999999999999999999
Q ss_pred ECCCCCeeEEec-CCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCC
Q 000251 340 RLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 418 (1784)
Q Consensus 340 Dl~tgk~i~~L~-gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h 418 (1784)
.+.+|.+++.+. .|+..|+|+.|+.|+. .+++++.|.++++--+..|+++..+ .+|
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~S---qiLS~sfD~tvRiHGlKSGK~LKEf--------------------rGH 347 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNS---QILSASFDQTVRIHGLKSGKCLKEF--------------------RGH 347 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcc---hhhcccccceEEEeccccchhHHHh--------------------cCc
Confidence 999999999986 8999999999999987 8999999999999999999988776 468
Q ss_pred CCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCC
Q 000251 419 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 498 (1784)
Q Consensus 419 ~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~ 498 (1784)
...|+...|.++|..+++++.||+|+||+..+..+..+..+ .+..-.|+.+...|..
T Consensus 348 sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~-------~~~d~~vnsv~~~PKn---------------- 404 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP-------LGTDYPVNSVILLPKN---------------- 404 (508)
T ss_pred cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC-------CCCcccceeEEEcCCC----------------
Confidence 89999999999999999999999999999988665433332 2345678888877764
Q ss_pred CccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC
Q 000251 499 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 578 (1784)
Q Consensus 499 ~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD 578 (1784)
+..+++|....+|.|.++...- .+.+. .+ ....+...+.+.||.
T Consensus 405 ---------peh~iVCNrsntv~imn~qGQv--------Vrsfs-------------SG------kREgGdFi~~~lSpk 448 (508)
T KOG0275|consen 405 ---------PEHFIVCNRSNTVYIMNMQGQV--------VRSFS-------------SG------KREGGDFINAILSPK 448 (508)
T ss_pred ---------CceEEEEcCCCeEEEEeccceE--------Eeeec-------------cC------CccCCceEEEEecCC
Confidence 4689999999999999877311 00000 00 112345667789999
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000251 579 NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638 (1784)
Q Consensus 579 G~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD 638 (1784)
|.++.+.+.|+.++.|.+.+|++.+++.-|...|..++-+| ...++|+-+.||.+++|.
T Consensus 449 GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCc-ccchhhhhcccchhhhcC
Confidence 99999999999999999999999999999999999999999 778999999999999995
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=258.87 Aligned_cols=286 Identities=20% Similarity=0.286 Sum_probs=243.2
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEC-CCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEE
Q 000251 306 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL-PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 384 (1784)
Q Consensus 306 ~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl-~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIW 384 (1784)
..+.+|.+.|..+.|+|+|.+||+|+.|..|.+|++ ...+-..++++|.+.|..+.|.+|++ .|++++.|.+|+.|
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s---~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGS---HILSCGTDKTVRGW 117 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCC---EEEEecCCceEEEE
Confidence 346799999999999999999999999999999995 34466778899999999999999998 99999999999999
Q ss_pred ecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCC-CEEEEeeCCceEEEEcCCCCCCCCCCCCCcce
Q 000251 385 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 463 (1784)
Q Consensus 385 Dl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG-~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i 463 (1784)
|+++|+....+. .|..-|+++.-+.-| .++.+|+.|++++|||+++... +
T Consensus 118 D~~tG~~~rk~k--------------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~---------~ 168 (338)
T KOG0265|consen 118 DAETGKRIRKHK--------------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA---------I 168 (338)
T ss_pred ecccceeeehhc--------------------cccceeeecCccccCCeEEEecCCCceEEEEeecccch---------h
Confidence 999999776653 477778888855555 4667788899999999986322 2
Q ss_pred eeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccc
Q 000251 464 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 543 (1784)
Q Consensus 464 ~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l 543 (1784)
.. ....-.++++.|...+ +.+++|+-|+.|++||++.
T Consensus 169 ~t-~~~kyqltAv~f~d~s--------------------------~qv~sggIdn~ikvWd~r~---------------- 205 (338)
T KOG0265|consen 169 KT-FENKYQLTAVGFKDTS--------------------------DQVISGGIDNDIKVWDLRK---------------- 205 (338)
T ss_pred hc-cccceeEEEEEecccc--------------------------cceeeccccCceeeecccc----------------
Confidence 22 2234568899998765 7899999999999999984
Q ss_pred cCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCC----CceEEEEecCCC----CeEEE
Q 000251 544 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD----GSLVHSLTGHTE----STYVL 615 (1784)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~t----gklv~~L~gH~~----~VtsL 615 (1784)
......+.+|...|+.+..+++|.++.+-++|.++++||++. ..++..+.+|.. ....+
T Consensus 206 -------------~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c 272 (338)
T KOG0265|consen 206 -------------NDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC 272 (338)
T ss_pred -------------CcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhccee
Confidence 334566788999999999999999999999999999999975 345888888754 34567
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000251 616 DVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 680 (1784)
Q Consensus 616 afSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWd 680 (1784)
+|+| +...+.+|+.|..+++||......+..+.+|.+.|.++.|+|....|.+++.|.+|++=.
T Consensus 273 swsp-~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 273 SWSP-NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eccC-CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 8999 778888999999999999988899999999999999999999999999999999998743
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=263.19 Aligned_cols=295 Identities=21% Similarity=0.359 Sum_probs=248.4
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCC
Q 000251 310 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 389 (1784)
Q Consensus 310 gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg 389 (1784)
.|.+.|.+|... +++|++|++||.++|||. .|+.+..+.||.++|.+++|.-.+.....|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488999999887 779999999999999995 79999999999999998888655443347999999999999999877
Q ss_pred cccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCC----------------C
Q 000251 390 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPN----------------T 453 (1784)
Q Consensus 390 ~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~----------------~ 453 (1784)
...-... ....+|...|-+++..++|..+++|+.|.+|.||+..+.. .
T Consensus 180 ~~~~~~~----------------~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~ 243 (423)
T KOG0313|consen 180 ENKVKAL----------------KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKR 243 (423)
T ss_pred hhhhhHH----------------hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhh
Confidence 6433221 1123799999999999999999999999999999932211 0
Q ss_pred CCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcc
Q 000251 454 DDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPK 533 (1784)
Q Consensus 454 ~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~ 533 (1784)
........++..+.||..+|.+|.|++. ..+++++.|.+|+.||+.++...
T Consensus 244 ~~~~~~r~P~vtl~GHt~~Vs~V~w~d~---------------------------~v~yS~SwDHTIk~WDletg~~~-- 294 (423)
T KOG0313|consen 244 EKEGGTRTPLVTLEGHTEPVSSVVWSDA---------------------------TVIYSVSWDHTIKVWDLETGGLK-- 294 (423)
T ss_pred hhcccccCceEEecccccceeeEEEcCC---------------------------CceEeecccceEEEEEeecccce--
Confidence 1122345567789999999999999974 48999999999999999974421
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCc---eEEEEecCCC
Q 000251 534 AARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGS---LVHSLTGHTE 610 (1784)
Q Consensus 534 ~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgk---lv~~L~gH~~ 610 (1784)
........++++..+|..++|++|+.|..|++||.+++. ..++|.||.+
T Consensus 295 ----------------------------~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n 346 (423)
T KOG0313|consen 295 ----------------------------STLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN 346 (423)
T ss_pred ----------------------------eeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh
Confidence 122345678999999999999999999999999998753 4568999999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000251 611 STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI-PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 681 (1784)
Q Consensus 611 ~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~-~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl 681 (1784)
.|.++.|+|.+..+|++|++|+++++||+.+.. ++..+.+|...|.++.|.. |.+|++|+.|.+|+|+..
T Consensus 347 wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 347 WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEecc
Confidence 999999999999999999999999999999887 9999999999999999984 678999999999999974
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-27 Score=253.92 Aligned_cols=291 Identities=23% Similarity=0.318 Sum_probs=253.8
Q ss_pred EEEecCCCCeEEEEEcC---CCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEE
Q 000251 306 ASCRGHEGDITDLAVSS---NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 382 (1784)
Q Consensus 306 ~tL~gH~~~VtsLafSp---Dg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIr 382 (1784)
.++.||..+|..++||| +|-+|++++.||.-.+-+-.+|.-+.++.+|.+.|++.....+.. ..++++.|-+-+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~---~aasaaadftak 84 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNAT---RAASAAADFTAK 84 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhh---hhhhhcccchhh
Confidence 46789999999999985 899999999999999999999999999999999999999988764 778999999999
Q ss_pred EEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcc
Q 000251 383 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHE 462 (1784)
Q Consensus 383 IWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~ 462 (1784)
+||.-+|..+..+ .|.+.|.+++|+.|.++|++|+.+..++|||+..+ ..+
T Consensus 85 vw~a~tgdelhsf---------------------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p--------~Ap 135 (334)
T KOG0278|consen 85 VWDAVTGDELHSF---------------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP--------KAP 135 (334)
T ss_pred hhhhhhhhhhhhh---------------------hhhheeeeEEecccchhhhccchHHHhhhhhccCC--------CCC
Confidence 9999998866655 47888999999999999999999999999999653 445
Q ss_pred eeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccccccccccc
Q 000251 463 IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 542 (1784)
Q Consensus 463 i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~ 542 (1784)
...+.+|.+.|..+.|.... ..|++.+.|++|++||.+++..
T Consensus 136 p~E~~ghtg~Ir~v~wc~eD--------------------------~~iLSSadd~tVRLWD~rTgt~------------ 177 (334)
T KOG0278|consen 136 PKEISGHTGGIRTVLWCHED--------------------------KCILSSADDKTVRLWDHRTGTE------------ 177 (334)
T ss_pred chhhcCCCCcceeEEEeccC--------------------------ceEEeeccCCceEEEEeccCcE------------
Confidence 67789999999999998653 6788889999999999997441
Q ss_pred ccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCC
Q 000251 543 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 622 (1784)
Q Consensus 543 l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~ 622 (1784)
.........|+++-++++|++|.++. .+.|.+||..+..+++.+.-. ..|.+..++| +.
T Consensus 178 ------------------v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P-~k 236 (334)
T KOG0278|consen 178 ------------------VQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMP-CNVESASLHP-KK 236 (334)
T ss_pred ------------------EEEEecCCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccCc-cccccccccC-CC
Confidence 12233556799999999999887764 468999999999999887743 4488999999 66
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEE-eccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 000251 623 RIAMSAGYDGKTIVWDIWEGIPIRIY-EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 687 (1784)
Q Consensus 623 ~lLaSgs~DG~IrIWDl~tG~~l~tl-~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~~ 687 (1784)
.++++|+.|..++.||..+|..+..+ .+|.++|.++.|+|||...|+|+.||+|+||.+..++..
T Consensus 237 ~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 237 EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 88889999999999999999999997 889999999999999999999999999999999876543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-24 Score=261.58 Aligned_cols=432 Identities=16% Similarity=0.144 Sum_probs=308.2
Q ss_pred ccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeE-EEEEecC-CCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCC
Q 000251 267 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC-LASCRGH-EGDITDLAVSSNNALVASASNDCIIRVWRLPDG 344 (1784)
Q Consensus 267 ~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~-l~tL~gH-~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg 344 (1784)
.--..+|.|+||+.+.+.||.+-.||.|-||++..+-. ...+.++ ...|.+++|+ ++..|++.+.+|.|.-||+.++
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccC
Confidence 33457899999999999999999999999999987644 3445554 4679999999 5567888889999999999999
Q ss_pred CeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEE
Q 000251 345 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC 424 (1784)
Q Consensus 345 k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~s 424 (1784)
+++..+....+.|++++.+|.+. .++.|+.||.+.+++...+.......+ ....+.|.+
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~---~l~IgcddGvl~~~s~~p~~I~~~r~l------------------~rq~sRvLs 159 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENT---ILAIGCDDGVLYDFSIGPDKITYKRSL------------------MRQKSRVLS 159 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccc---eEEeecCCceEEEEecCCceEEEEeec------------------ccccceEEE
Confidence 99999999999999999999987 899999999888888877765544432 224678999
Q ss_pred EEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeee-cCCCCCceEEEEccCcccccccccCCCCCCCCCcccc
Q 000251 425 CAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL-SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 503 (1784)
Q Consensus 425 LafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l-~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~ 503 (1784)
++|+|++..|++|+.||.|++||+.++..... . ...+..+ .+...-|+++.|..+
T Consensus 160 lsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~-~-~~~~d~l~k~~~~iVWSv~~Lrd---------------------- 215 (691)
T KOG2048|consen 160 LSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHI-I-TMQLDRLSKREPTIVWSVLFLRD---------------------- 215 (691)
T ss_pred EEecCCccEEEecccCceEEEEEcCCCceEEE-e-eecccccccCCceEEEEEEEeec----------------------
Confidence 99999999999999999999999977543210 0 0001111 123345677777654
Q ss_pred ccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEE
Q 000251 504 SWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVL 583 (1784)
Q Consensus 504 ~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~La 583 (1784)
..|++|..-|+|.+||... +...+....|...|.+++.++++.+++
T Consensus 216 -----~tI~sgDS~G~V~FWd~~~-----------------------------gTLiqS~~~h~adVl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 216 -----STIASGDSAGTVTFWDSIF-----------------------------GTLIQSHSCHDADVLALAVADNEDRVF 261 (691)
T ss_pred -----CcEEEecCCceEEEEcccC-----------------------------cchhhhhhhhhcceeEEEEcCCCCeEE
Confidence 4899999999999999885 334555667889999999999999999
Q ss_pred EEecCCeEEEEECCCCce----EEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC--------------------
Q 000251 584 AAIMDCRICVWNAADGSL----VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI-------------------- 639 (1784)
Q Consensus 584 Sgs~DGsI~VWDl~tgkl----v~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl-------------------- 639 (1784)
+++.|+.|..|...+++. ......|...|.+++..++ .+++||.|..+.+-..
T Consensus 262 saGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v 338 (691)
T KOG2048|consen 262 SAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRV 338 (691)
T ss_pred EccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc---eEEecceeeEEEEccccccCchhhhcccccccccee
Confidence 999999999998876643 2234578888999988762 7778888776555322
Q ss_pred ----------------------CCC---------ceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 000251 640 ----------------------WEG---------IPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688 (1784)
Q Consensus 640 ----------------------~tG---------~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~~~ 688 (1784)
.+. .+++........|.+.+.||||++||.+.- ..++||.+...-.++
T Consensus 339 ~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk 417 (691)
T KOG2048|consen 339 SVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVK 417 (691)
T ss_pred ecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCccee
Confidence 111 111222233457889999999999998764 456677665422221
Q ss_pred ccc-----------cceeecCCCcceEEccCC--c--eeecccccccCcCCCCCcccCCCCCCCCCcchhhhhccccccc
Q 000251 689 DAK-----------YDQFFLGDYRPLVQDTYG--N--VLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGAL 753 (1784)
Q Consensus 689 ~~~-----------~~~~fs~D~r~Lv~d~~g--~--vld~~tql~phl~~l~~~L~D~~~~p~p~~~Q~l~~~rr~~v~ 753 (1784)
... ....|.-|..-++..... . .++.++...-++..+++ | +.-..+.
T Consensus 418 ~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~--------------~----~~~~~I~ 479 (691)
T KOG2048|consen 418 VINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQS--------------Q----AKCPSIS 479 (691)
T ss_pred EEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhcccc--------------c----cCCCcce
Confidence 111 122445455444433311 1 12222222222222111 1 1223566
Q ss_pred ceEECCCCCeEEEeeCCCCCCceEeecCCCcccc--cCCCccccceeeeCCC
Q 000251 754 GIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVM--IDPLPEFIDVMDWEPE 803 (1784)
Q Consensus 754 ~iAfSPDG~~LAvg~d~s~~~~v~lw~l~~~~~l--i~plp~~i~~~~wsPD 803 (1784)
.|+-||||.|||+. +..+.+-+|.+.+.+.- ..-++..++.++|+|.
T Consensus 480 ~l~~SsdG~yiaa~---~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~ 528 (691)
T KOG2048|consen 480 RLVVSSDGNYIAAI---STRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPF 528 (691)
T ss_pred eEEEcCCCCEEEEE---eccceEEEEEcccceeecchhccCcceeeeecccc
Confidence 78899999999999 78899999999876533 2245678999999977
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-26 Score=284.36 Aligned_cols=288 Identities=25% Similarity=0.463 Sum_probs=251.0
Q ss_pred EEEcc-CCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEC
Q 000251 264 KRVRG-HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS-CRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 341 (1784)
Q Consensus 264 ~tL~G-H~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~t-L~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl 341 (1784)
+.+.+ |...|.|..|. +.++++++.+++|++|+..++..+.. +.||.+.|++++|..-+.+|++|+.|.+++|||+
T Consensus 201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC 278 (537)
T ss_pred eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence 34444 67789999998 56899999999999999999999998 9999999999999887889999999999999999
Q ss_pred CCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCc
Q 000251 342 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 421 (1784)
Q Consensus 342 ~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~ 421 (1784)
.+|.++.++.+|...|.++...+. ++++|+.|.+|++|++.++.++..+ .+|...
T Consensus 279 ~sg~C~~~l~gh~stv~~~~~~~~-----~~~sgs~D~tVkVW~v~n~~~l~l~--------------------~~h~~~ 333 (537)
T KOG0274|consen 279 STGECTHSLQGHTSSVRCLTIDPF-----LLVSGSRDNTVKVWDVTNGACLNLL--------------------RGHTGP 333 (537)
T ss_pred CCCcEEEEecCCCceEEEEEccCc-----eEeeccCCceEEEEeccCcceEEEe--------------------cccccc
Confidence 999999999999999999999875 7889999999999999988877665 238889
Q ss_pred eEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCcc
Q 000251 422 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 501 (1784)
Q Consensus 422 V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~ 501 (1784)
|.++.++ +.++++|+.|++|+||++.+ .+.+..+.+|.+.|.++.+.+.
T Consensus 334 V~~v~~~--~~~lvsgs~d~~v~VW~~~~---------~~cl~sl~gH~~~V~sl~~~~~-------------------- 382 (537)
T KOG0274|consen 334 VNCVQLD--EPLLVSGSYDGTVKVWDPRT---------GKCLKSLSGHTGRVYSLIVDSE-------------------- 382 (537)
T ss_pred EEEEEec--CCEEEEEecCceEEEEEhhh---------ceeeeeecCCcceEEEEEecCc--------------------
Confidence 9999997 88999999999999999975 5678999999999999988753
Q ss_pred ccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCE
Q 000251 502 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF 581 (1784)
Q Consensus 502 ~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~ 581 (1784)
..+++|+.|++|++||+.+.. .++..+..|..-|..+ ...+++
T Consensus 383 -------~~~~Sgs~D~~IkvWdl~~~~----------------------------~c~~tl~~h~~~v~~l--~~~~~~ 425 (537)
T KOG0274|consen 383 -------NRLLSGSLDTTIKVWDLRTKR----------------------------KCIHTLQGHTSLVSSL--LLRDNF 425 (537)
T ss_pred -------ceEEeeeeccceEeecCCchh----------------------------hhhhhhcCCccccccc--ccccce
Confidence 489999999999999999631 2344455566666444 346789
Q ss_pred EEEEecCCeEEEEECCCCceEEEEec-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe
Q 000251 582 VLAAIMDCRICVWNAADGSLVHSLTG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE 649 (1784)
Q Consensus 582 LaSgs~DGsI~VWDl~tgklv~~L~g-H~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~ 649 (1784)
|++++.|++|++||..++++++++.+ |...|+.+++. ...+++++.||.+++||+.++++++.+.
T Consensus 426 Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~~~~~l~ 491 (537)
T KOG0274|consen 426 LVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGTLIRTLL 491 (537)
T ss_pred eEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCchhhhhh
Confidence 99999999999999999999999999 67888888875 3567788999999999999999988774
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=254.56 Aligned_cols=478 Identities=16% Similarity=0.189 Sum_probs=332.9
Q ss_pred EEEEEccCCCCEEEEEECCCCCEEEEEcCCc--------EEEEEECCCCeEEEEEecCCCCeEEEEEcC--CCCEEEEE-
Q 000251 262 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDR--------LVKIWSMETAYCLASCRGHEGDITDLAVSS--NNALVASA- 330 (1784)
Q Consensus 262 ~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DG--------tIkIWDl~Tgk~l~tL~gH~~~VtsLafSp--Dg~lLASG- 330 (1784)
..+.+.||+..|.|++.+||.-++|+|-.-| .|+|||..+...++.+-.....|+|++|++ .|.+|+..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence 4467889999999999999999999885554 599999988888888887888999999998 34455554
Q ss_pred -eCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCC
Q 000251 331 -SNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 409 (1784)
Q Consensus 331 -S~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~ 409 (1784)
+.+..+.|||.+.+......+.....|....|+|.+. .|+.....|.+.+|+++++.+..+.-+-
T Consensus 176 ~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~---nliit~Gk~H~~Fw~~~~~~l~k~~~~f----------- 241 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDP---NLIITCGKGHLYFWTLRGGSLVKRQGIF----------- 241 (626)
T ss_pred CCCccccchhhchhhhccCcceeccceEEEEEeccCCC---cEEEEeCCceEEEEEccCCceEEEeecc-----------
Confidence 3456789999999888777777778899999999887 4555566789999999998876654221
Q ss_pred CCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccc
Q 000251 410 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 489 (1784)
Q Consensus 410 ~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~ 489 (1784)
.......|.|++|.++|. +++|.++|.|.||+..+ .+.......|.+.|.+++...+|
T Consensus 242 -----ek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~---------~~~~k~~~aH~ggv~~L~~lr~G------- 299 (626)
T KOG2106|consen 242 -----EKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGT---------NRISKQVHAHDGGVFSLCMLRDG------- 299 (626)
T ss_pred -----ccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCC---------ceEEeEeeecCCceEEEEEecCc-------
Confidence 112236799999999997 78899999999999854 23344445999999999998876
Q ss_pred cCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCC--cccccc--cc-------cccccCCCCCCCCCCCCCC
Q 000251 490 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH--PKAARW--TQ-------AYHLKVPPPPMPPQPPRGG 558 (1784)
Q Consensus 490 ~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~--~~~~~w--~~-------~~~l~~~~~~~~~~~~~~~ 558 (1784)
.|++|+.|..|..||-.-.+.. ...... .+ .+.+...............
T Consensus 300 --------------------tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 300 --------------------TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG 359 (626)
T ss_pred --------------------cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence 7888999999999993321110 000000 00 0000000001111112233
Q ss_pred CceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000251 559 PRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638 (1784)
Q Consensus 559 ~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD 638 (1784)
......+|......++.+|+...+++++.|+.+++|+ ..+++.+.. -..++.++.|+|.+ .+|.|...|...+.|
T Consensus 360 f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d 434 (626)
T KOG2106|consen 360 FTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG--VVAVGTATGRWFVLD 434 (626)
T ss_pred ceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc--eEEEeeccceEEEEe
Confidence 4445677888899999999999999999999999999 555555443 34668899999954 888999999999999
Q ss_pred CCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc--------ccccccceeecCCCcceEEccCCc
Q 000251 639 IWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES--------QKDAKYDQFFLGDYRPLVQDTYGN 710 (1784)
Q Consensus 639 l~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~--------~~~~~~~~~fs~D~r~Lv~d~~g~ 710 (1784)
.++...+..-. ...++..++|+|+|.+||+|+.|+.|+||.+..+.. .......+.|++|...|...+.+.
T Consensus 435 ~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~ 513 (626)
T KOG2106|consen 435 TETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDY 513 (626)
T ss_pred cccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCce
Confidence 99866655544 488999999999999999999999999999876432 223335668999999988766554
Q ss_pred -eeecccccccCcCCCCCcccCCCCCCCCCcchhhhhc--ccccccceEECCCCCeEEEeeCCCCCCceEeecCCCccc-
Q 000251 711 -VLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQ--RRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDV- 786 (1784)
Q Consensus 711 -vld~~tql~phl~~l~~~L~D~~~~p~p~~~Q~l~~~--rr~~v~~iAfSPDG~~LAvg~d~s~~~~v~lw~l~~~~~- 786 (1784)
++-.....++...++.+.-|-. +.-.+--.+.+ ....+.+++-|.+..+||+| ...+.++++...=-..
T Consensus 514 eiLyW~~~~~~~~ts~kDvkW~t----~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~g---dd~g~v~lf~yPc~s~r 586 (626)
T KOG2106|consen 514 EILYWKPSECKQITSVKDVKWAT----YTCTLGFEVFGGSDGTDINAVARSHCEKLLASG---DDFGKVHLFSYPCSSPR 586 (626)
T ss_pred EEEEEccccCcccceecceeeee----eEEEEEEEEecccCCchHHHhhhhhhhhhhhcc---ccCceEEEEccccCCCc
Confidence 2222222233222222222211 11111101111 12236677889999999999 4556677765521110
Q ss_pred --c--cCCCccccceeeeCCCCCccc
Q 000251 787 --M--IDPLPEFIDVMDWEPENEVQS 808 (1784)
Q Consensus 787 --l--i~plp~~i~~~~wsPDg~~ls 808 (1784)
. ......+++.++|.-+.-.+.
T Consensus 587 A~~he~~ghs~~vt~V~Fl~~d~~li 612 (626)
T KOG2106|consen 587 APSHEYGGHSSHVTNVAFLCKDSHLI 612 (626)
T ss_pred ccceeeccccceeEEEEEeeCCceEE
Confidence 1 113357788999998865554
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=244.49 Aligned_cols=294 Identities=18% Similarity=0.245 Sum_probs=237.2
Q ss_pred EEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCC
Q 000251 265 RVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 344 (1784)
Q Consensus 265 tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg 344 (1784)
.|+||..+++-|.|+.+|.+|++++.|.++.||-..+|+.+.++.||.+.|+|++..-+.++|++|+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEecCCCCceEEEEecCCCCccEEEEEEe-----CCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000251 345 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS-----DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 419 (1784)
Q Consensus 345 k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs-----~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~ 419 (1784)
+++..+. -..+|..+.|+++++ +++... ..+.|.++|++....... ...+......+.
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn---~~l~~tD~~mg~~~~v~~fdi~~~~~~~~-------------s~ep~~kI~t~~ 147 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGN---LILASTDKQMGYTCFVSVFDIRDDSSDID-------------SEEPYLKIPTPD 147 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCc---EEEEEehhhcCcceEEEEEEccCChhhhc-------------ccCceEEecCCc
Confidence 9999997 568899999999986 444433 346789999874331000 001111122345
Q ss_pred CceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCC
Q 000251 420 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 499 (1784)
Q Consensus 420 ~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~ 499 (1784)
..++.+.|.|-+.+|++|..||.|.+||++++. ..+.....|...|+.++++++.
T Consensus 148 skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~--------~~v~s~~~h~~~Ind~q~s~d~----------------- 202 (327)
T KOG0643|consen 148 SKITSALWGPLGETIIAGHEDGSISIYDARTGK--------ELVDSDEEHSSKINDLQFSRDR----------------- 202 (327)
T ss_pred cceeeeeecccCCEEEEecCCCcEEEEEcccCc--------eeeechhhhccccccccccCCc-----------------
Confidence 779999999999999999999999999998753 3455667789999999999986
Q ss_pred ccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC
Q 000251 500 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 579 (1784)
Q Consensus 500 ~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG 579 (1784)
.++++++.|.+.++||+.+.. .........+|++.+++|-.
T Consensus 203 ---------T~FiT~s~Dttakl~D~~tl~------------------------------v~Kty~te~PvN~aaisP~~ 243 (327)
T KOG0643|consen 203 ---------TYFITGSKDTTAKLVDVRTLE------------------------------VLKTYTTERPVNTAAISPLL 243 (327)
T ss_pred ---------ceEEecccCccceeeecccee------------------------------eEEEeeecccccceeccccc
Confidence 799999999999999998633 22333456789999999998
Q ss_pred CEEEEEecCCeEEE--EECCCC------------ceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000251 580 RFVLAAIMDCRICV--WNAADG------------SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 640 (1784)
Q Consensus 580 ~~LaSgs~DGsI~V--WDl~tg------------klv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 640 (1784)
.+++.|+.....-| =..+.| +.+..++||-++|++|+||| ++...+|||.||.|+|.-..
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEEEEEec
Confidence 88888764322211 111222 34667889999999999999 67777899999999997653
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-26 Score=248.34 Aligned_cols=291 Identities=20% Similarity=0.327 Sum_probs=251.7
Q ss_pred EEEccCCCCEEEEEECC---CCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEE
Q 000251 264 KRVRGHRNAVYCAIFDR---SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 340 (1784)
Q Consensus 264 ~tL~GH~~~Vt~VaFSP---DG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWD 340 (1784)
.+..||+.+|..++||| +|-+|++++.||.-.+-+-+||..+.++.||.+.|++..+..+-...|+++.|-+.+|||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 45679999999999986 899999999999999999999999999999999999999999988999999999999999
Q ss_pred CCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCC
Q 000251 341 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 420 (1784)
Q Consensus 341 l~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~ 420 (1784)
.-+|..+..+. |...|.+++|+.|.. +|++|+.+..++|||++..+. +.....+|.+
T Consensus 88 a~tgdelhsf~-hkhivk~~af~~ds~---~lltgg~ekllrvfdln~p~A-------------------pp~E~~ghtg 144 (334)
T KOG0278|consen 88 AVTGDELHSFE-HKHIVKAVAFSQDSN---YLLTGGQEKLLRVFDLNRPKA-------------------PPKEISGHTG 144 (334)
T ss_pred hhhhhhhhhhh-hhheeeeEEecccch---hhhccchHHHhhhhhccCCCC-------------------CchhhcCCCC
Confidence 99999998887 899999999999987 899999999999999976542 2223457889
Q ss_pred ceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCc
Q 000251 421 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 500 (1784)
Q Consensus 421 ~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~ 500 (1784)
.|..+.|....+.|++...|++||+||.+++. .+..+. ....|+++.++++|
T Consensus 145 ~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt---------~v~sL~-~~s~VtSlEvs~dG------------------ 196 (334)
T KOG0278|consen 145 GIRTVLWCHEDKCILSSADDKTVRLWDHRTGT---------EVQSLE-FNSPVTSLEVSQDG------------------ 196 (334)
T ss_pred cceeEEEeccCceEEeeccCCceEEEEeccCc---------EEEEEe-cCCCCcceeeccCC------------------
Confidence 99999999999999999999999999998754 343333 35678999999886
Q ss_pred cccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC
Q 000251 501 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 580 (1784)
Q Consensus 501 ~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 580 (1784)
.+++....+.|.+||..+-... .....+..|.+..++|+..
T Consensus 197 ---------~ilTia~gssV~Fwdaksf~~l------------------------------Ks~k~P~nV~SASL~P~k~ 237 (334)
T KOG0278|consen 197 ---------RILTIAYGSSVKFWDAKSFGLL------------------------------KSYKMPCNVESASLHPKKE 237 (334)
T ss_pred ---------CEEEEecCceeEEeccccccce------------------------------eeccCccccccccccCCCc
Confidence 7888888899999998863211 1112345688889999999
Q ss_pred EEEEEecCCeEEEEECCCCceEEEE-ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000251 581 FVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 645 (1784)
Q Consensus 581 ~LaSgs~DGsI~VWDl~tgklv~~L-~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l 645 (1784)
++++|+.|+.++.||..+|..+..+ ++|.++|.||.|+| ++.+.++|+.||+|+||....++.-
T Consensus 238 ~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999999999886 89999999999999 7788899999999999998766543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=242.67 Aligned_cols=295 Identities=19% Similarity=0.282 Sum_probs=242.1
Q ss_pred cceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC--CCEE
Q 000251 259 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN--DCII 336 (1784)
Q Consensus 259 ~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~--DGtI 336 (1784)
.+++.+.|+.-.+.|+++.|+++|.+|++++.|-+|+|||..+|+.++++..+.-.|..++|......++.++. |.+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 45666777777889999999999999999999999999999999999999998889999999988777777776 8899
Q ss_pred EEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCC
Q 000251 337 RVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 416 (1784)
Q Consensus 337 rVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~ 416 (1784)
+..++.+.+.++.+.||...|++|+.+|-+. .+++++.|++|++||++..++...+.+.
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d---~FlS~S~D~tvrLWDlR~~~cqg~l~~~------------------ 141 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDD---TFLSSSLDKTVRLWDLRVKKCQGLLNLS------------------ 141 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCC---eEEecccCCeEEeeEecCCCCceEEecC------------------
Confidence 9999999999999999999999999999886 8999999999999999988776665331
Q ss_pred CCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCC
Q 000251 417 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 496 (1784)
Q Consensus 417 ~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~ 496 (1784)
.-..+||.|.|-++|++.....|++||++... ..|..............+.|.|+|+|
T Consensus 142 ----~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~d----kgPF~tf~i~~~~~~ew~~l~FS~dG-------------- 199 (311)
T KOG1446|consen 142 ----GRPIAAFDPEGLIFALANGSELIKLYDLRSFD----KGPFTTFSITDNDEAEWTDLEFSPDG-------------- 199 (311)
T ss_pred ----CCcceeECCCCcEEEEecCCCeEEEEEecccC----CCCceeEccCCCCccceeeeEEcCCC--------------
Confidence 23467999999999999988899999998632 12222222223556788999999998
Q ss_pred CCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCC---CeeEE
Q 000251 497 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR---GVNMI 573 (1784)
Q Consensus 497 ~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~---~VtsV 573 (1784)
..++.+...+.+.+.|.-++..... +..+.. --...
T Consensus 200 ------------K~iLlsT~~s~~~~lDAf~G~~~~t-----------------------------fs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 200 ------------KSILLSTNASFIYLLDAFDGTVKST-----------------------------FSGYPNAGNLPLSA 238 (311)
T ss_pred ------------CEEEEEeCCCcEEEEEccCCcEeee-----------------------------EeeccCCCCcceeE
Confidence 6888889999999998776442111 111111 12467
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCceEEEEec-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000251 574 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 640 (1784)
Q Consensus 574 afSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~g-H~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 640 (1784)
+|+||+++|++|+.||+|.+|++.+|..+..+.+ +.+++.++.|.| .-.+++ +.+..+.+|=..
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP-~~~mf~--sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP-RYAMFV--SASSNLVFWLPD 303 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC-ceeeee--ecCceEEEEecc
Confidence 8999999999999999999999999999999998 789999999988 444444 456778898654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=258.97 Aligned_cols=302 Identities=21% Similarity=0.310 Sum_probs=233.0
Q ss_pred ceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCe----EEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCC
Q 000251 260 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY----CLASCR-GHEGDITDLAVSSNNALVASASNDC 334 (1784)
Q Consensus 260 ~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk----~l~tL~-gH~~~VtsLafSpDg~lLASGS~DG 334 (1784)
...-..|.+|+..|.++++.|.|-+|++||.|.+|++||+.... ..+.|. .....|.++.|++.|..|++.+...
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 34456789999999999999999999999999999999986432 122222 2345799999999999888888888
Q ss_pred EEEEEECCCCCeeE-------------EecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCC
Q 000251 335 IIRVWRLPDGLPIS-------------VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 401 (1784)
Q Consensus 335 tIrVWDl~tgk~i~-------------~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~ 401 (1784)
.++|+|- .|..+. ..+||...++|.+|+|+.+ ..|++++.||+++|||+...+....+..+.
T Consensus 237 qakl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k--~~FlT~s~DgtlRiWdv~~~k~q~qVik~k-- 311 (641)
T KOG0772|consen 237 QAKLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK--EEFLTCSYDGTLRIWDVNNTKSQLQVIKTK-- 311 (641)
T ss_pred ceeEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcc--cceEEecCCCcEEEEecCCchhheeEEeec--
Confidence 9999994 453332 2368999999999999976 379999999999999998765333332211
Q ss_pred CcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCC--CceEEEEc
Q 000251 402 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN--DVNYVQFS 479 (1784)
Q Consensus 402 ~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~--~V~sLafS 479 (1784)
...+..-.++.|+|+++|++||+|+.||.|.+|+..... ....+..-.+|.. .|++|.|+
T Consensus 312 ------------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~------v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 312 ------------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT------VRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred ------------cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcc------cccceEeeeccCCCCceeEEEec
Confidence 122455678999999999999999999999999985421 1223445567877 99999999
Q ss_pred cCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCC
Q 000251 480 GCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 559 (1784)
Q Consensus 480 pdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~ 559 (1784)
++| ++|++-+.|+++++||++..+.. +.
T Consensus 374 ~dg--------------------------~~LlSRg~D~tLKvWDLrq~kkp---------L~----------------- 401 (641)
T KOG0772|consen 374 YDG--------------------------NYLLSRGFDDTLKVWDLRQFKKP---------LN----------------- 401 (641)
T ss_pred ccc--------------------------chhhhccCCCceeeeeccccccc---------hh-----------------
Confidence 997 79999999999999999963310 00
Q ss_pred ceeccCCCCCeeEEEEcCCCCEEEEEe------cCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 000251 560 RQRILPTPRGVNMIVWSLDNRFVLAAI------MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK 633 (1784)
Q Consensus 560 ~~~l~~h~~~VtsVafSPDG~~LaSgs------~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~ 633 (1784)
...-+.....-+.++|||+.++|++|+ ..|.+.+||..+...+..+.-....|..+.|||--++++ .|+.||+
T Consensus 402 ~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~-~gsgdG~ 480 (641)
T KOG0772|consen 402 VRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF-AGSGDGT 480 (641)
T ss_pred hhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee-eecCCCc
Confidence 001112234456789999999999976 357899999999999999988888899999999544554 5677899
Q ss_pred EEEE
Q 000251 634 TIVW 637 (1784)
Q Consensus 634 IrIW 637 (1784)
++||
T Consensus 481 ~~vy 484 (641)
T KOG0772|consen 481 AHVY 484 (641)
T ss_pred eEEE
Confidence 9876
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=277.21 Aligned_cols=295 Identities=19% Similarity=0.364 Sum_probs=218.8
Q ss_pred ccccceEEEEEc-cCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecC----------CCCeEEEEEcC--
Q 000251 256 MVQKMQNIKRVR-GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGH----------EGDITDLAVSS-- 322 (1784)
Q Consensus 256 ~~~~~k~l~tL~-GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH----------~~~VtsLafSp-- 322 (1784)
.+......+.+. +|.++|+|+.||+||+|||+||.||.|+||.+........-.+. .+.+..+..++
T Consensus 252 elsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~ 331 (712)
T KOG0283|consen 252 ELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEK 331 (712)
T ss_pred cceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccc
Confidence 344455566777 99999999999999999999999999999998653321110000 01111111111
Q ss_pred -CCC--EEEEEeCCCEEEEEECC----CCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCccccee
Q 000251 323 -NNA--LVASASNDCIIRVWRLP----DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 395 (1784)
Q Consensus 323 -Dg~--lLASGS~DGtIrVWDl~----tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i 395 (1784)
.++ ..-.+.....+ +.... ..+++..+.||.+.|..|.|+.++ +|++++.|.||++|++....++..+
T Consensus 332 ~~~~~s~~~~~~~s~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~----fLLSSSMDKTVRLWh~~~~~CL~~F 406 (712)
T KOG0283|consen 332 ISSRTSSSRKGSQSPCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN----FLLSSSMDKTVRLWHPGRKECLKVF 406 (712)
T ss_pred ccccccccccccCCccc-cCCCccccccccchhhhhccchhheecccccCC----eeEeccccccEEeecCCCcceeeEE
Confidence 011 12222222222 22221 246788899999999999999986 8999999999999999999888877
Q ss_pred ecCCCCCcccCCCCCCCCCCCCCCCceEEEEECC-CCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCce
Q 000251 396 YIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVN 474 (1784)
Q Consensus 396 ~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSp-dG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~ 474 (1784)
.|...|+|++|+| |.++|++|+-||.|+||++..
T Consensus 407 ---------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d------------------------ 441 (712)
T KOG0283|consen 407 ---------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD------------------------ 441 (712)
T ss_pred ---------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCc------------------------
Confidence 3888999999999 779999999999999999831
Q ss_pred EEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCC
Q 000251 475 YVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQP 554 (1784)
Q Consensus 475 sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~ 554 (1784)
..|..|.=
T Consensus 442 -------------------------------------------~~Vv~W~D----------------------------- 449 (712)
T KOG0283|consen 442 -------------------------------------------KKVVDWND----------------------------- 449 (712)
T ss_pred -------------------------------------------CeeEeehh-----------------------------
Confidence 12233310
Q ss_pred CCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEe--cC------CCCeEEEEEecCCCcEEE
Q 000251 555 PRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GH------TESTYVLDVHPFNPRIAM 626 (1784)
Q Consensus 555 ~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~--gH------~~~VtsLafSPdd~~lLa 626 (1784)
-..-|++++|+|||++.++|+.+|.+++|++...+++..+. -| ...|+++.|.|.+..-|+
T Consensus 450 -----------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vL 518 (712)
T KOG0283|consen 450 -----------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVL 518 (712)
T ss_pred -----------hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEE
Confidence 11358899999999999999999999999988777665432 11 227999999996665455
Q ss_pred EEeCCCcEEEEeCCCCceEEEEeccCc--ceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000251 627 SAGYDGKTIVWDIWEGIPIRIYEISRF--RLVDGKFSPDGASIILSDDVGQLYILNTGQ 683 (1784)
Q Consensus 627 Sgs~DG~IrIWDl~tG~~l~tl~~~~~--~ItslafSPDGk~LAsgs~DG~I~IWdl~s 683 (1784)
..+.|..|+|+|+.+..++..|++... .-....|+.||++|+++++|..|+||+...
T Consensus 519 VTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 519 VTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred EecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 668899999999999999998886543 334679999999999999999999999854
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=244.36 Aligned_cols=294 Identities=15% Similarity=0.227 Sum_probs=244.6
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecC
Q 000251 308 CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387 (1784)
Q Consensus 308 L~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~ 387 (1784)
+.||..+++.|.++.+|.+|++++.|.++.||-..+|+.+.++.||++.|+|+...-+.+ +|++|+.|.++++||+.
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~---~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSK---HLITGSADQTAKLWDVE 82 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcc---eeeeccccceeEEEEcC
Confidence 578999999999999999999999999999999889999999999999999999998887 89999999999999999
Q ss_pred CCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeC-----CceEEEEcCCCCCCCCCCCCCcc
Q 000251 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-----DTLARVWNACKPNTDDSDQPNHE 462 (1784)
Q Consensus 388 tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~-----DG~IrVWDl~tg~~~~s~~~~~~ 462 (1784)
+|+++..+.. ...|..+.|+++|++++.... .+.|.++|++.... ......+
T Consensus 83 tGk~la~~k~---------------------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~--~~~s~ep 139 (327)
T KOG0643|consen 83 TGKQLATWKT---------------------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS--DIDSEEP 139 (327)
T ss_pred CCcEEEEeec---------------------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh--hhcccCc
Confidence 9998887743 456899999999998887654 46899999975332 1122344
Q ss_pred eeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccccccccccc
Q 000251 463 IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 542 (1784)
Q Consensus 463 i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~ 542 (1784)
+..+..+...++.+.|.|.+ +.|++|..||.|.+||++++..
T Consensus 140 ~~kI~t~~skit~a~Wg~l~--------------------------~~ii~Ghe~G~is~~da~~g~~------------ 181 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGPLG--------------------------ETIIAGHEDGSISIYDARTGKE------------ 181 (327)
T ss_pred eEEecCCccceeeeeecccC--------------------------CEEEEecCCCcEEEEEcccCce------------
Confidence 67778888999999999876 7999999999999999997441
Q ss_pred ccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCC
Q 000251 543 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 622 (1784)
Q Consensus 543 l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~ 622 (1784)
.+.....|...|+.+++++|..++++++.|.+.++||+.+-++++++.. ..+|++.+++|...
T Consensus 182 ----------------~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~~d 244 (327)
T KOG0643|consen 182 ----------------LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPLLD 244 (327)
T ss_pred ----------------eeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-cccccceecccccc
Confidence 1222345777999999999999999999999999999999999999874 56799999999665
Q ss_pred cEEEEEeCCCc-E------------EEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000251 623 RIAMSAGYDGK-T------------IVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 682 (1784)
Q Consensus 623 ~lLaSgs~DG~-I------------rIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~ 682 (1784)
.+++.||.+-. | ++|++-..+.+..+++|-++|.+++|+|||+..++|+.||.|++.-+.
T Consensus 245 ~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 245 HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 66555554321 1 222222234567788999999999999999999999999999998664
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-25 Score=252.15 Aligned_cols=299 Identities=21% Similarity=0.369 Sum_probs=239.9
Q ss_pred CCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC---EEEEEeCCCEEEEEECCCCC
Q 000251 269 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA---LVASASNDCIIRVWRLPDGL 345 (1784)
Q Consensus 269 H~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~---lLASGS~DGtIrVWDl~tgk 345 (1784)
|.+.|.+|... ++.|+||+.||+++|||.. |+...++.||.++|.+++|.--+. .+++++.|.++++|.++.+.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 88889988887 7899999999999999976 899999999999999988864333 69999999999999988774
Q ss_pred e----eEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceee---cC---CCCCcccCCCCCCCCCC
Q 000251 346 P----ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY---IP---RPSDAVAGRNMAPSSSA 415 (1784)
Q Consensus 346 ~----i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~---l~---~~~~~~~g~~~~~~~s~ 415 (1784)
. +...+||...|.+|...+++. .+++|+.|.+|.||+..+.. ...+. .. .......+....+....
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~sgt---r~~SgS~D~~lkiWs~~~~~-~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDSSGT---RFCSGSWDTMLKIWSVETDE-EDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred hhhhHHhHhcccccceeEEEecCCCC---eEEeecccceeeecccCCCc-cccccccchhhhhhhhhhhcccccCceEEe
Confidence 3 344569999999999999997 99999999999999933221 11110 00 00001113334556677
Q ss_pred CCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCC
Q 000251 416 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 495 (1784)
Q Consensus 416 ~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~ 495 (1784)
.+|...|.++.|++ ...+++++.|.+|++||+.++.. +..+. -...++++.++|..
T Consensus 257 ~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~---------~~~~~-~~ksl~~i~~~~~~------------- 312 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL---------KSTLT-TNKSLNCISYSPLS------------- 312 (423)
T ss_pred cccccceeeEEEcC-CCceEeecccceEEEEEeecccc---------eeeee-cCcceeEeeccccc-------------
Confidence 89999999999997 66899999999999999987532 22222 23457788888754
Q ss_pred CCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEE
Q 000251 496 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 575 (1784)
Q Consensus 496 ~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf 575 (1784)
.+|++|+.|..|++||++++. .....+.+.+|...|.++.|
T Consensus 313 -------------~Ll~~gssdr~irl~DPR~~~--------------------------gs~v~~s~~gH~nwVssvkw 353 (423)
T KOG0313|consen 313 -------------KLLASGSSDRHIRLWDPRTGD--------------------------GSVVSQSLIGHKNWVSSVKW 353 (423)
T ss_pred -------------ceeeecCCCCceeecCCCCCC--------------------------CceeEEeeecchhhhhheec
Confidence 699999999999999999743 12345678899999999999
Q ss_pred cCCCCE-EEEEecCCeEEEEECCCCc-eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000251 576 SLDNRF-VLAAIMDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639 (1784)
Q Consensus 576 SPDG~~-LaSgs~DGsI~VWDl~tgk-lv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 639 (1784)
+|...+ |++|+.|+++++||+++.+ ++..+.+|...|.++.|.. +.++++||.|.+|+|+.-
T Consensus 354 sp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 354 SPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--CceEEeccCcceEEEecc
Confidence 997765 6789999999999999887 9999999999999999975 668899999999999864
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-26 Score=262.73 Aligned_cols=288 Identities=23% Similarity=0.320 Sum_probs=241.0
Q ss_pred EEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEE
Q 000251 263 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY--CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 340 (1784)
Q Consensus 263 l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk--~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWD 340 (1784)
...+..|.+.|..+.|-++...|+||+.|..|++|++..++ .+.+|.|..+.|+++.|.++++++++++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 45678899999999999998999999999999999997766 6778889999999999999999999999999999999
Q ss_pred CCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCC
Q 000251 341 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 420 (1784)
Q Consensus 341 l~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~ 420 (1784)
+..++...+|.||+..|+++.|.-... .+++|+.|.+|++||+....+..++.. ..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~~---~vVsgs~DRtiK~WDl~k~~C~kt~l~---------------------~S 303 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSHS---RVVSGSADRTIKLWDLQKAYCSKTVLP---------------------GS 303 (459)
T ss_pred ccchhhhhhhcccccceeeehhhcccc---ceeeccccchhhhhhhhhhheeccccc---------------------cc
Confidence 999999999999999999999998764 599999999999999998877666532 23
Q ss_pred ceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCc
Q 000251 421 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 500 (1784)
Q Consensus 421 ~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~ 500 (1784)
.+..|+.+ +..+++|..|+.|++||++++ ........+. .|+++..++++
T Consensus 304 ~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~---------~~~~sv~~gg-~vtSl~ls~~g------------------ 353 (459)
T KOG0288|consen 304 QCNDIVCS--ISDVISGHFDKKVRFWDIRSA---------DKTRSVPLGG-RVTSLDLSMDG------------------ 353 (459)
T ss_pred cccceEec--ceeeeecccccceEEEeccCC---------ceeeEeecCc-ceeeEeeccCC------------------
Confidence 35555555 567899999999999999764 3444555554 89999999887
Q ss_pred cccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC
Q 000251 501 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 580 (1784)
Q Consensus 501 ~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 580 (1784)
..|.+++.|.++.+.|+++......... .-.......+.++|||++.
T Consensus 354 --------~~lLsssRDdtl~viDlRt~eI~~~~sA-------------------------~g~k~asDwtrvvfSpd~~ 400 (459)
T KOG0288|consen 354 --------LELLSSSRDDTLKVIDLRTKEIRQTFSA-------------------------EGFKCASDWTRVVFSPDGS 400 (459)
T ss_pred --------eEEeeecCCCceeeeecccccEEEEeec-------------------------cccccccccceeEECCCCc
Confidence 5788889999999999997442211100 0011223488999999999
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEecCCC--CeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000251 581 FVLAAIMDCRICVWNAADGSLVHSLTGHTE--STYVLDVHPFNPRIAMSAGYDGKTIVWD 638 (1784)
Q Consensus 581 ~LaSgs~DGsI~VWDl~tgklv~~L~gH~~--~VtsLafSPdd~~lLaSgs~DG~IrIWD 638 (1784)
|+++|+.||.|+||++.+|++...+..... .|++++|+| .+..|++++.++.+.+|.
T Consensus 401 YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 401 YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEecC
Confidence 999999999999999999999998876554 499999999 677888999999999993
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=263.60 Aligned_cols=369 Identities=18% Similarity=0.233 Sum_probs=288.7
Q ss_pred cccccccccccccceEEEEEccCCCCEEEEEECCCCCE-EEEEcCCcEEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCC
Q 000251 247 CYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRY-VITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSNN 324 (1784)
Q Consensus 247 ~~~~~~~~~~~~~~k~l~tL~GH~~~Vt~VaFSPDG~~-LATGS~DGtIkIWDl~Tgk~l~tL~-gH~~~VtsLafSpDg 324 (1784)
+.+..+....+...+.+.+|+.-.+.|+.++|.-||.. ||+|+..|.+.+||++..+++..++ .|.+.|..+.|.+..
T Consensus 221 ~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e 300 (910)
T KOG1539|consen 221 LENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE 300 (910)
T ss_pred ccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC
Confidence 34455566677788889999866799999999999975 5677778999999999988887776 799999999999999
Q ss_pred CEEEEEeCCCEEEEEECC--CC--CeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeec---
Q 000251 325 ALVASASNDCIIRVWRLP--DG--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI--- 397 (1784)
Q Consensus 325 ~lLASGS~DGtIrVWDl~--tg--k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l--- 397 (1784)
..|++++.|..+++|=.. +| +.++.-.||..+..||.|..... +.+++++.|++++.+++......+.+..
T Consensus 301 pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g--~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~ 378 (910)
T KOG1539|consen 301 PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQG--HFILSAKQDRTLRSFSVISESQSQELGQLHN 378 (910)
T ss_pred ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCc--EEEEecccCcchhhhhhhHHHHhHhhccccc
Confidence 999999999999988544 44 45667789999999999985433 5899999999999888753221111100
Q ss_pred ---------------CCCCCc-cc--------------------------------CCCCCCCCCCCCCCCceEEEEECC
Q 000251 398 ---------------PRPSDA-VA--------------------------------GRNMAPSSSAGPQSHQIFCCAFNA 429 (1784)
Q Consensus 398 ---------------~~~~~~-~~--------------------------------g~~~~~~~s~~~h~~~V~sLafSp 429 (1784)
.-++.. .. |...............+++++.++
T Consensus 379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF 458 (910)
T ss_pred ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence 000000 00 111111111222446789999999
Q ss_pred CCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCC
Q 000251 430 NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 509 (1784)
Q Consensus 430 dG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~ 509 (1784)
.|++.+.|+..|.|-+|++.++-.. .....-..|...|+.++..... .
T Consensus 459 CGNF~~IG~S~G~Id~fNmQSGi~r------~sf~~~~ah~~~V~gla~D~~n--------------------------~ 506 (910)
T KOG1539|consen 459 CGNFVFIGYSKGTIDRFNMQSGIHR------KSFGDSPAHKGEVTGLAVDGTN--------------------------R 506 (910)
T ss_pred cCceEEEeccCCeEEEEEcccCeee------cccccCccccCceeEEEecCCC--------------------------c
Confidence 9999999999999999999764321 1111236899999999987543 6
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCC
Q 000251 510 NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC 589 (1784)
Q Consensus 510 ~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DG 589 (1784)
.+++++.+|.+++||+..... .....-...+.++..+.....++.+..|-
T Consensus 507 ~~vsa~~~Gilkfw~f~~k~l------------------------------~~~l~l~~~~~~iv~hr~s~l~a~~~ddf 556 (910)
T KOG1539|consen 507 LLVSAGADGILKFWDFKKKVL------------------------------KKSLRLGSSITGIVYHRVSDLLAIALDDF 556 (910)
T ss_pred eEEEccCcceEEEEecCCcce------------------------------eeeeccCCCcceeeeeehhhhhhhhcCce
Confidence 899999999999999985321 11112335677888888888999999999
Q ss_pred eEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEE
Q 000251 590 RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIIL 669 (1784)
Q Consensus 590 sI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAs 669 (1784)
.|+|+|+.+.+.++.|.||.+.|++++||| ++++|++++.|++|++||+.++.++-.+. -..+.+.+.|||+|.+||+
T Consensus 557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT 634 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLAT 634 (910)
T ss_pred eEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEE
Confidence 999999999999999999999999999999 88999999999999999999999998886 5668899999999999999
Q ss_pred EeCC-CeEEEEEC
Q 000251 670 SDDV-GQLYILNT 681 (1784)
Q Consensus 670 gs~D-G~I~IWdl 681 (1784)
+..| ..|++|.-
T Consensus 635 ~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 635 VHVDQNGIYLWSN 647 (910)
T ss_pred EEecCceEEEEEc
Confidence 9776 78999974
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=236.03 Aligned_cols=287 Identities=19% Similarity=0.237 Sum_probs=241.7
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEE--ecCCCCceEEEEecCCCCccEEEEEEeCCCcEEE
Q 000251 306 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV--LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383 (1784)
Q Consensus 306 ~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~--L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrI 383 (1784)
+.+++|.+.|.+|+|+.+|..||+|+.|+++.||++..++.... ..+|++.|-.++|.|... ..|++++.|.+|++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~--d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP--DLFATASGDKTIRI 91 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC--cceEEecCCceEEE
Confidence 44678999999999999999999999999999999987755543 468999999999999765 48999999999999
Q ss_pred EecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcce
Q 000251 384 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 463 (1784)
Q Consensus 384 WDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i 463 (1784)
||++.+++...+.. ...=.-++|+|+|.++++|+.|..|.+.|.++.+..
T Consensus 92 wd~r~~k~~~~i~~---------------------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~--------- 141 (313)
T KOG1407|consen 92 WDIRSGKCTARIET---------------------KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIV--------- 141 (313)
T ss_pred EEeccCcEEEEeec---------------------cCcceEEEEcCCCCEEEEecCcccEEEEEeccccee---------
Confidence 99999998877643 222346889999999999999999999999864321
Q ss_pred eeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccc
Q 000251 464 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 543 (1784)
Q Consensus 464 ~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l 543 (1784)
.-....-.+..++|+.. +++++....-|+|.|.....
T Consensus 142 -~~~~~~~e~ne~~w~~~--------------------------nd~Fflt~GlG~v~ILsyps---------------- 178 (313)
T KOG1407|consen 142 -NEEQFKFEVNEISWNNS--------------------------NDLFFLTNGLGCVEILSYPS---------------- 178 (313)
T ss_pred -ehhcccceeeeeeecCC--------------------------CCEEEEecCCceEEEEeccc----------------
Confidence 11223345667777743 36777777789999976553
Q ss_pred cCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCc
Q 000251 544 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 623 (1784)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~ 623 (1784)
..+...+..|.....||.|+|+|+|||+|+.|..+-+||+..--+++.+..+.-+|..|.|+. +++
T Consensus 179 -------------Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~ 244 (313)
T KOG1407|consen 179 -------------LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGR 244 (313)
T ss_pred -------------cccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-Ccc
Confidence 345667788999999999999999999999999999999999999999999999999999998 889
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCC---------CeEEEEECC
Q 000251 624 IAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDV---------GQLYILNTG 682 (1784)
Q Consensus 624 lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~D---------G~I~IWdl~ 682 (1784)
+||+|+.|..|-|=++.+|..+..++ +.++...++|+|...+||.+++| |.|++|.+.
T Consensus 245 ~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 99999999999999999999999997 78889999999999999987543 577777654
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=235.16 Aligned_cols=285 Identities=19% Similarity=0.284 Sum_probs=239.8
Q ss_pred EEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEE--EecCCCCeEEEEEcC-CCCEEEEEeCCCEEEEEE
Q 000251 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS--CRGHEGDITDLAVSS-NNALVASASNDCIIRVWR 340 (1784)
Q Consensus 264 ~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~t--L~gH~~~VtsLafSp-Dg~lLASGS~DGtIrVWD 340 (1784)
+.+++|...|.+|+|+-+|..||+|+.|+++.||+++.++.+.. .++|.+.|-.++|.| ...++++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 66889999999999999999999999999999999988766554 468999999999998 456899999999999999
Q ss_pred CCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCC
Q 000251 341 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 420 (1784)
Q Consensus 341 l~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~ 420 (1784)
+..++++.......+.| -+.|+|++. ++++++.|..|.+.|.++.+..... ....
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~---~~~~~~kdD~it~id~r~~~~~~~~---------------------~~~~ 148 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGE---YIAVGNKDDRITFIDARTYKIVNEE---------------------QFKF 148 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCC---EEEEecCcccEEEEEecccceeehh---------------------cccc
Confidence 99999999887554544 478999998 9999999999999999887654433 2344
Q ss_pred ceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCc
Q 000251 421 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 500 (1784)
Q Consensus 421 ~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~ 500 (1784)
.+.-++|+-++.+|+.....|.|.|..... .+++..+.+|.....||.|+|+|
T Consensus 149 e~ne~~w~~~nd~Fflt~GlG~v~ILsyps---------Lkpv~si~AH~snCicI~f~p~G------------------ 201 (313)
T KOG1407|consen 149 EVNEISWNNSNDLFFLTNGLGCVEILSYPS---------LKPVQSIKAHPSNCICIEFDPDG------------------ 201 (313)
T ss_pred eeeeeeecCCCCEEEEecCCceEEEEeccc---------cccccccccCCcceEEEEECCCC------------------
Confidence 577889998888777777789999988742 56788899999999999999998
Q ss_pred cccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC
Q 000251 501 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 580 (1784)
Q Consensus 501 ~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 580 (1784)
.+|++|+.|..+.+||+.. .-+...+..+.-+|..+.||.||+
T Consensus 202 --------ryfA~GsADAlvSLWD~~E-----------------------------LiC~R~isRldwpVRTlSFS~dg~ 244 (313)
T KOG1407|consen 202 --------RYFATGSADALVSLWDVDE-----------------------------LICERCISRLDWPVRTLSFSHDGR 244 (313)
T ss_pred --------ceEeeccccceeeccChhH-----------------------------hhhheeeccccCceEEEEeccCcc
Confidence 7999999999999999884 123344555778899999999999
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCC---------CcEEEEeC
Q 000251 581 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD---------GKTIVWDI 639 (1784)
Q Consensus 581 ~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~D---------G~IrIWDl 639 (1784)
+||+|+.|..|-|=++.+|..++.+. +.++.+.|+||| ...+||-++.| |.|+||-+
T Consensus 245 ~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred eeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecCCCCccccccceeEEecC
Confidence 99999999999999999999999987 678889999999 66666665544 45666544
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=252.79 Aligned_cols=375 Identities=17% Similarity=0.248 Sum_probs=282.4
Q ss_pred ccceEEEEEccCCCCEEEEEECCCCC---EEEEEcCCcEEEEEECCCCe---------------------EEEE------
Q 000251 258 QKMQNIKRVRGHRNAVYCAIFDRSGR---YVITGSDDRLVKIWSMETAY---------------------CLAS------ 307 (1784)
Q Consensus 258 ~~~k~l~tL~GH~~~Vt~VaFSPDG~---~LATGS~DGtIkIWDl~Tgk---------------------~l~t------ 307 (1784)
.+++.+..|.||.+.|..++|...+. +||++|.|..|+||.+.-+. .+..
T Consensus 179 d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is 258 (764)
T KOG1063|consen 179 DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS 258 (764)
T ss_pred cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe
Confidence 36789999999999999999998665 88999999999999874221 1111
Q ss_pred ----EecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCC--Ce-----eEEecCCCCceEEEEecCCCCccEEEEEEe
Q 000251 308 ----CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG--LP-----ISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 376 (1784)
Q Consensus 308 ----L~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg--k~-----i~~L~gH~~~VtsLafSPdg~~~~~LaSgs 376 (1784)
+.||.+.|.++.|+|.+..|++++.|.++.+|...+. -- +..+.+..+..++..|+|+++ .+++-+
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~---~ii~~g 335 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN---VIIAHG 335 (764)
T ss_pred hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC---EEEEec
Confidence 2399999999999999999999999999999976543 21 222334556789999999986 899999
Q ss_pred CCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCC
Q 000251 377 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDS 456 (1784)
Q Consensus 377 ~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s 456 (1784)
..|-.++|....... ........+|...|..++|.|.|.+|++.+.|.+-|||-.- + .
T Consensus 336 ~~Gg~hlWkt~d~~~-----------------w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g----~ 393 (764)
T KOG1063|consen 336 RTGGFHLWKTKDKTF-----------------WTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-G----R 393 (764)
T ss_pred ccCcEEEEeccCccc-----------------eeeccccccccccceeeeecCCCCEEEEeccccceeeeccc-c----c
Confidence 999999998322111 11123345789999999999999999999999999999764 1 1
Q ss_pred CCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCC-------
Q 000251 457 DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR------- 529 (1784)
Q Consensus 457 ~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~------- 529 (1784)
.....++..-+-|...++|++|-+.. -.|++|.....+++|++...-
T Consensus 394 q~~wHEiaRPQiHGyDl~c~~~vn~~--------------------------~~FVSgAdEKVlRvF~aPk~fv~~l~~i 447 (764)
T KOG1063|consen 394 QQEWHEIARPQIHGYDLTCLSFVNED--------------------------LQFVSGADEKVLRVFEAPKSFVKSLMAI 447 (764)
T ss_pred ccceeeecccccccccceeeehccCC--------------------------ceeeecccceeeeeecCcHHHHHHHHHH
Confidence 23367777778899999999998632 478889888999998765210
Q ss_pred ----CCcc----ccccccccccc------------------------CCCCCCCCCC--------CCCCCceeccCCCCC
Q 000251 530 ----SHPK----AARWTQAYHLK------------------------VPPPPMPPQP--------PRGGPRQRILPTPRG 569 (1784)
Q Consensus 530 ----~~~~----~~~w~~~~~l~------------------------~~~~~~~~~~--------~~~~~~~~l~~h~~~ 569 (1784)
.... .+.-...+.+. ..+..+...+ ..-.....+.+|...
T Consensus 448 ~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyE 527 (764)
T KOG1063|consen 448 CGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYE 527 (764)
T ss_pred hCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCcee
Confidence 0000 00000000000 0000000000 011244567889999
Q ss_pred eeEEEEcCCCCEEEEEecC-----CeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 000251 570 VNMIVWSLDNRFVLAAIMD-----CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 644 (1784)
Q Consensus 570 VtsVafSPDG~~LaSgs~D-----GsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~ 644 (1784)
|.+++.+|+|+++|+++.. ..|++|+..+...+..+.+|+-.|+.|+||| ++++|++++.|.++.+|....+..
T Consensus 528 v~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~ 606 (764)
T KOG1063|consen 528 VYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIK 606 (764)
T ss_pred EEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccc
Confidence 9999999999999998754 3599999999999999999999999999999 788999999999999998865422
Q ss_pred ----EEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000251 645 ----IRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 684 (1784)
Q Consensus 645 ----l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sG 684 (1784)
....+.|.--|+++.|+||+.++|+++.|..|.||....+
T Consensus 607 ~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 607 DEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred hhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 2335567777899999999999999999999999999877
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=253.49 Aligned_cols=470 Identities=16% Similarity=0.205 Sum_probs=322.7
Q ss_pred cceEEEEEccCCCCEEEEEECCCCC---EEEEEcCCcEEEEEECCCC--eEEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 000251 259 KMQNIKRVRGHRNAVYCAIFDRSGR---YVITGSDDRLVKIWSMETA--YCLASCRGHEGDITDLAVSSNNALVASASND 333 (1784)
Q Consensus 259 ~~k~l~tL~GH~~~Vt~VaFSPDG~---~LATGS~DGtIkIWDl~Tg--k~l~tL~gH~~~VtsLafSpDg~lLASGS~D 333 (1784)
+...+.++.||.+.|+|+.|-|+.. ++++|+.|+.|++|.+... .++.++.+|...+.|+ ......+.+.+.|
T Consensus 43 k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv--~a~~~~~~~~~ad 120 (764)
T KOG1063|consen 43 KILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCV--VARSSVMTCKAAD 120 (764)
T ss_pred cceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEE--EeeeeEEEeeccC
Confidence 3356788999999999999999888 8999999999999999743 3455666665555444 3222233333567
Q ss_pred CEEEEEECCCC--------------------------------------------------CeeEEecCCCCceEEEEec
Q 000251 334 CIIRVWRLPDG--------------------------------------------------LPISVLRGHTAAVTAIAFS 363 (1784)
Q Consensus 334 GtIrVWDl~tg--------------------------------------------------k~i~~L~gH~~~VtsLafS 363 (1784)
+++.+||.+.. +.+..+.||...|.+|+|.
T Consensus 121 ~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~ 200 (764)
T KOG1063|consen 121 GTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFA 200 (764)
T ss_pred ceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhh
Confidence 77888876211 2345577999999999999
Q ss_pred CCCCccEEEEEEeCCCcEEEEecCCCcccc----eeecCCCCCc---ccCC----CCCCCCCCCCCCCceEEEEECCCCC
Q 000251 364 PRPGSVYQLLSSSDDGTCRIWDARYSQFSP----RIYIPRPSDA---VAGR----NMAPSSSAGPQSHQIFCCAFNANGT 432 (1784)
Q Consensus 364 Pdg~~~~~LaSgs~DGtIrIWDl~tg~~l~----~i~l~~~~~~---~~g~----~~~~~~s~~~h~~~V~sLafSpdG~ 432 (1784)
..+.+..+|++++.|..|+||.+.-+.... .......... .... .........+|...|.++-|+|.+.
T Consensus 201 ~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~ 280 (764)
T KOG1063|consen 201 RLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGL 280 (764)
T ss_pred ccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchh
Confidence 877656799999999999999886544221 1111000000 0000 0011233458999999999999999
Q ss_pred EEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEE
Q 000251 433 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIV 512 (1784)
Q Consensus 433 ~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LV 512 (1784)
.|++++.|.++.+|.-.+..-. ......+..+.+.........|+|++ +.++
T Consensus 281 ~LLSASaDksmiiW~pd~~tGi--Wv~~vRlGe~gg~a~GF~g~lw~~n~--------------------------~~ii 332 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGI--WVDVVRLGEVGGSAGGFWGGLWSPNS--------------------------NVII 332 (764)
T ss_pred hheecccCcceEEEecCCccce--EEEEEEeecccccccceeeEEEcCCC--------------------------CEEE
Confidence 9999999999999987542100 00011122333555667888888876 6889
Q ss_pred EEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEE
Q 000251 513 TCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRIC 592 (1784)
Q Consensus 513 SgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~ 592 (1784)
+-+..|..++|.... ...|. +...+.+|...|..|+|+|.|.||++.+.|.+-+
T Consensus 333 ~~g~~Gg~hlWkt~d------~~~w~--------------------~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTR 386 (764)
T KOG1063|consen 333 AHGRTGGFHLWKTKD------KTFWT--------------------QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTR 386 (764)
T ss_pred EecccCcEEEEeccC------cccee--------------------eccccccccccceeeeecCCCCEEEEecccccee
Confidence 999999999997221 11222 2334568999999999999999999999999999
Q ss_pred EEECCCC-c---eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC---------------------------
Q 000251 593 VWNAADG-S---LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE--------------------------- 641 (1784)
Q Consensus 593 VWDl~tg-k---lv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t--------------------------- 641 (1784)
||-.-.. . .+..-+-|...++|++|-+ +...+++|.....+++|+...
T Consensus 387 lFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~Vp 465 (764)
T KOG1063|consen 387 LFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVP 465 (764)
T ss_pred eecccccccceeeecccccccccceeeehcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccc
Confidence 9876411 1 2223345778899999987 567778888888889997521
Q ss_pred ----------------Cce---------------------------------EEEEeccCcceEEEEEcCCCCEEEEEeC
Q 000251 642 ----------------GIP---------------------------------IRIYEISRFRLVDGKFSPDGASIILSDD 672 (1784)
Q Consensus 642 ----------------G~~---------------------------------l~tl~~~~~~ItslafSPDGk~LAsgs~ 672 (1784)
|.. ++.+.+|...|++++.+|+|++||+++.
T Consensus 466 aLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCK 545 (764)
T KOG1063|consen 466 ALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACK 545 (764)
T ss_pred cccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhh
Confidence 000 1122367779999999999999999855
Q ss_pred -----CCeEEEEECCCCccccccc------cceeecCCCcceEEccCCceeecccccccCcCCCCCcccCCCCCCCCCcc
Q 000251 673 -----VGQLYILNTGQGESQKDAK------YDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPY 741 (1784)
Q Consensus 673 -----DG~I~IWdl~sGe~~~~~~------~~~~fs~D~r~Lv~d~~g~vld~~tql~phl~~l~~~L~D~~~~p~p~~~ 741 (1784)
...|++|++.+-...+.+. ..+.|++|++.|+.....+.+..-.++ .. +.+. -.+
T Consensus 546 S~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~----~~----~~~e------~~f 611 (764)
T KOG1063|consen 546 SSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQ----ED----IKDE------FRF 611 (764)
T ss_pred hCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeee----cc----cchh------hhh
Confidence 3479999998765554332 456999999999976666543211111 00 0000 001
Q ss_pred hhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeecCCCc--ccccC----CCccccceeeeCCC
Q 000251 742 QTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADL--DVMID----PLPEFIDVMDWEPE 803 (1784)
Q Consensus 742 Q~l~~~rr~~v~~iAfSPDG~~LAvg~d~s~~~~v~lw~l~~~--~~li~----plp~~i~~~~wsPD 803 (1784)
- ....|+.-++.+.|+||+.++|++ +.|..+.+|...+. +.+-. ++...+++++|.|-
T Consensus 612 a-~~k~HtRIIWdcsW~pde~~FaTa---SRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 612 A-CLKAHTRIIWDCSWSPDEKYFATA---SRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPV 675 (764)
T ss_pred c-cccccceEEEEcccCcccceeEEe---cCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecc
Confidence 1 134566679999999999999999 99999999998766 33322 45577888888775
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=240.93 Aligned_cols=297 Identities=24% Similarity=0.436 Sum_probs=251.7
Q ss_pred cceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEE
Q 000251 259 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRV 338 (1784)
Q Consensus 259 ~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrV 338 (1784)
..++++.|.||.+.|+.|+.......+.+++.|.+.+||.+++|.|+.++.||.+.|.+|.|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 56788899999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred EEC------CC------------------------------C----CeeEEecCCCCceEEEEecCCCCccEEEEEEeCC
Q 000251 339 WRL------PD------------------------------G----LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD 378 (1784)
Q Consensus 339 WDl------~t------------------------------g----k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~D 378 (1784)
|.. .. | .++..|.+|.+.|.+..|...++ .+++++.|
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~---Q~vTaSWD 293 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ---QMVTASWD 293 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc---eeeeeecc
Confidence 962 10 1 24556789999999999999887 89999999
Q ss_pred CcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCC
Q 000251 379 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 458 (1784)
Q Consensus 379 GtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~ 458 (1784)
.+..+||++++..+..+ .+|....+.++-+|..+++++.+.|.+.++||++.
T Consensus 294 RTAnlwDVEtge~v~~L--------------------tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe-------- 345 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNIL--------------------TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE-------- 345 (481)
T ss_pred ccceeeeeccCceeccc--------------------cCcchhccccccCCcceEEEEeccCceeEeccchh--------
Confidence 99999999999866544 46888899999999999999999999999999973
Q ss_pred CCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccccccc
Q 000251 459 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 538 (1784)
Q Consensus 459 ~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~ 538 (1784)
....+..+.||...|+++.|.-+ +.+++|+.|.+|+|||+++-+.
T Consensus 346 aI~sV~VFQGHtdtVTS~vF~~d---------------------------d~vVSgSDDrTvKvWdLrNMRs-------- 390 (481)
T KOG0300|consen 346 AIQSVAVFQGHTDTVTSVVFNTD---------------------------DRVVSGSDDRTVKVWDLRNMRS-------- 390 (481)
T ss_pred hcceeeeecccccceeEEEEecC---------------------------CceeecCCCceEEEeeeccccC--------
Confidence 25567889999999999999865 5899999999999999996321
Q ss_pred ccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEE----EEecCCCCeEE
Q 000251 539 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH----SLTGHTESTYV 614 (1784)
Q Consensus 539 ~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~----~L~gH~~~Vts 614 (1784)
++ .......+++.++.+..+..|+.-..+..|++||+....+.+ .-.||...|+|
T Consensus 391 --------------------pl-ATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c 449 (481)
T KOG0300|consen 391 --------------------PL-ATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTC 449 (481)
T ss_pred --------------------cc-eeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeee
Confidence 11 122345678999999999999998888999999996443322 33589999999
Q ss_pred EEEecCCC-cEEEEEeCCCcEEEEeCCCC
Q 000251 615 LDVHPFNP-RIAMSAGYDGKTIVWDIWEG 642 (1784)
Q Consensus 615 LafSPdd~-~lLaSgs~DG~IrIWDl~tG 642 (1784)
++|..... .-|+++|.|..+.=|.+...
T Consensus 450 ~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 450 CAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeccccCcccccccccccceeeeeEeccc
Confidence 99965322 34668999999999998643
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=261.67 Aligned_cols=340 Identities=20% Similarity=0.317 Sum_probs=266.1
Q ss_pred CCCCEE---EEEEC-CCCCEEEEEcCCcEEEEEECCCCe------EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEE
Q 000251 269 HRNAVY---CAIFD-RSGRYVITGSDDRLVKIWSMETAY------CLASCRGHEGDITDLAVSSNNALVASASNDCIIRV 338 (1784)
Q Consensus 269 H~~~Vt---~VaFS-PDG~~LATGS~DGtIkIWDl~Tgk------~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrV 338 (1784)
|...|. ++..+ |.+++|+|||.||.|++|++..-. .+.++..|.++|.+++...+++.|+++|.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 444555 44444 456789999999999999985432 46778899999999999999999999999999999
Q ss_pred EECCCC--CeeEEecCCCCceEEEEe-cCCCCccEEEEEEeCCCcEEEEecCCCcc--cceeecCCCCCcccCCCCCCCC
Q 000251 339 WRLPDG--LPISVLRGHTAAVTAIAF-SPRPGSVYQLLSSSDDGTCRIWDARYSQF--SPRIYIPRPSDAVAGRNMAPSS 413 (1784)
Q Consensus 339 WDl~tg--k~i~~L~gH~~~VtsLaf-SPdg~~~~~LaSgs~DGtIrIWDl~tg~~--l~~i~l~~~~~~~~g~~~~~~~ 413 (1784)
|+...+ -++.++..|...|.|+++ .++.. ++|+||-|+.|.+||+.++.. +..+. .....
T Consensus 100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~---lvaSgGLD~~IflWDin~~~~~l~~s~n------------~~t~~ 164 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNE---LVASGGLDRKIFLWDINTGTATLVASFN------------NVTVN 164 (735)
T ss_pred eecccCcchhHhhhhcccchheeeeecccCce---eEEecCCCccEEEEEccCcchhhhhhcc------------ccccc
Confidence 999877 678889999999999999 55554 899999999999999998832 22221 11112
Q ss_pred CCC-CCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCC
Q 000251 414 SAG-PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 492 (1784)
Q Consensus 414 s~~-~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s 492 (1784)
... ++...|++++.++.|..|++|+..+.|++||.++ .+.+..+.||+..|.++..+.+|
T Consensus 165 sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt---------~~kimkLrGHTdNVr~ll~~dDG---------- 225 (735)
T KOG0308|consen 165 SLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT---------CKKIMKLRGHTDNVRVLLVNDDG---------- 225 (735)
T ss_pred cCCCCCccceeeeecCCcceEEEecCcccceEEecccc---------ccceeeeeccccceEEEEEcCCC----------
Confidence 222 7788899999999999999999999999999987 45677888999999999999987
Q ss_pred CCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeE
Q 000251 493 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 572 (1784)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 572 (1784)
..++++|.||+|++||+...+ ++..+..|...|++
T Consensus 226 ----------------t~~ls~sSDgtIrlWdLgqQr-----------------------------Cl~T~~vH~e~VWa 260 (735)
T KOG0308|consen 226 ----------------TRLLSASSDGTIRLWDLGQQR-----------------------------CLATYIVHKEGVWA 260 (735)
T ss_pred ----------------CeEeecCCCceEEeeeccccc-----------------------------eeeeEEeccCceEE
Confidence 799999999999999998533 34456678888999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-------CceE
Q 000251 573 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE-------GIPI 645 (1784)
Q Consensus 573 VafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t-------G~~l 645 (1784)
+..+|+-.++++|+.||.|..=|+.+......+-....+|..+..+..+..+ -++..|+.|+-|-+.- +.+.
T Consensus 261 L~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~-WvtTtds~I~rW~~~~~~~l~~s~~~~ 339 (735)
T KOG0308|consen 261 LQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSV-WVTTTDSSIKRWKLEPDIALSVSGDLD 339 (735)
T ss_pred EeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCc-eeeeccccceecCCccccccccCCCCC
Confidence 9999999999999999999999999854433333355667777776544443 4567899999996532 1111
Q ss_pred ------------------EEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccc
Q 000251 646 ------------------RIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKD 689 (1784)
Q Consensus 646 ------------------~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~~~~ 689 (1784)
.++. +..+|...++-.|.+++++-+..|.+.+||+-.+..+..
T Consensus 340 ~~~T~~~~~~~~~~~tp~~vi~-Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d 400 (735)
T KOG0308|consen 340 FFSTDSNNHSCDLTNTPDSVIP-GGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVED 400 (735)
T ss_pred cccccCCCccccccCCCceecc-CchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhh
Confidence 0111 223455556667889999999999999999977665543
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=252.42 Aligned_cols=331 Identities=18% Similarity=0.265 Sum_probs=263.2
Q ss_pred EEEEEECCCCCEEEEEcCCcEEEEEECCCCeEE---EEEecCCCCeEEEEEcCC-----------CCEEEEEeCCCEEEE
Q 000251 273 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL---ASCRGHEGDITDLAVSSN-----------NALVASASNDCIIRV 338 (1784)
Q Consensus 273 Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l---~tL~gH~~~VtsLafSpD-----------g~lLASGS~DGtIrV 338 (1784)
..++.|++....|...-.|..|+|||+.+-..+ ..+-.|...|+++.--|. ...+++++.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 456789999999999999999999999764433 234469999998876652 125889999999999
Q ss_pred EECCCCCeeEE-------------------------------------ecCCCCceEEEEecCCCCccEEEEEEeCCCcE
Q 000251 339 WRLPDGLPISV-------------------------------------LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 381 (1784)
Q Consensus 339 WDl~tgk~i~~-------------------------------------L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtI 381 (1784)
|++..+.--.+ .-+....|.+|+.+|+++ +|++|..-|+|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq---hLAsGDr~Gnl 483 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ---HLASGDRGGNL 483 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc---eecccCccCce
Confidence 99865311000 001234589999999998 99999999999
Q ss_pred EEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECC---CCCEEEEeeCCceEEEEcCCCCCCCCCCC
Q 000251 382 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA---NGTVFVTGSSDTLARVWNACKPNTDDSDQ 458 (1784)
Q Consensus 382 rIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSp---dG~~LasGs~DG~IrVWDl~tg~~~~s~~ 458 (1784)
++|++........+ ..|...|.|+.|+. ..++||+++.|..|.|||+..
T Consensus 484 rVy~Lq~l~~~~~~--------------------eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r-------- 535 (1080)
T KOG1408|consen 484 RVYDLQELEYTCFM--------------------EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR-------- 535 (1080)
T ss_pred EEEEehhhhhhhhe--------------------ecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc--------
Confidence 99999876544433 45889999999986 347899999999999999953
Q ss_pred CCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccccccc
Q 000251 459 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 538 (1784)
Q Consensus 459 ~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~ 538 (1784)
....+.++.+|...|++|.|...++ +..+++++.|..|.+--... . ...
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gl------------------------n~~MiscGADksimFr~~qk-~--~~g---- 584 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGL------------------------NRKMISCGADKSIMFRVNQK-A--SSG---- 584 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCC------------------------ceEEEeccCchhhheehhcc-c--cCc----
Confidence 3557788999999999999998763 24788999998876532110 0 000
Q ss_pred ccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEec---CCCCeEEE
Q 000251 539 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG---HTESTYVL 615 (1784)
Q Consensus 539 ~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~g---H~~~VtsL 615 (1784)
...+..........+..++..|..+++++++.|..|+||++.+|+.++.|+| |.+....+
T Consensus 585 -----------------~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv 647 (1080)
T KOG1408|consen 585 -----------------RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKV 647 (1080)
T ss_pred -----------------eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEE
Confidence 0011111122334588899999999999999999999999999999999975 66778888
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000251 616 DVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 683 (1784)
Q Consensus 616 afSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~s 683 (1784)
...| .+.+||+...|.++.++|..+|+++....+|...|+.+.|++|-++|++++.||.|+||.+..
T Consensus 648 ~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 648 ILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 8999 788999999999999999999999999999999999999999999999999999999999854
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.7e-24 Score=266.64 Aligned_cols=281 Identities=25% Similarity=0.418 Sum_probs=246.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEE-ecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCC
Q 000251 311 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV-LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 389 (1784)
Q Consensus 311 H~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~-L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg 389 (1784)
+...|.+..|. ..++++++.+++|++|+..++..+.. +.||.+.|++++|..-+. +|++|+.|.++++||..+|
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~---~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGD---KLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCC---EEEEEecCCcEEeEecCCC
Confidence 56778888887 55899999999999999999999988 999999999999987443 8999999999999999999
Q ss_pred cccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCC
Q 000251 390 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 469 (1784)
Q Consensus 390 ~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH 469 (1784)
.+...+. +|...|.++... +..+++|+.|.+|+||++.+ +..+..+.+|
T Consensus 282 ~C~~~l~--------------------gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n---------~~~l~l~~~h 330 (537)
T KOG0274|consen 282 ECTHSLQ--------------------GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTN---------GACLNLLRGH 330 (537)
T ss_pred cEEEEec--------------------CCCceEEEEEcc--CceEeeccCCceEEEEeccC---------cceEEEeccc
Confidence 9887763 577788888764 45788899999999999965 5577888889
Q ss_pred CCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCC
Q 000251 470 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 549 (1784)
Q Consensus 470 ~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~ 549 (1784)
.+.|.++.... +.+++|+.||+|++||+.+
T Consensus 331 ~~~V~~v~~~~----------------------------~~lvsgs~d~~v~VW~~~~---------------------- 360 (537)
T KOG0274|consen 331 TGPVNCVQLDE----------------------------PLLVSGSYDGTVKVWDPRT---------------------- 360 (537)
T ss_pred cccEEEEEecC----------------------------CEEEEEecCceEEEEEhhh----------------------
Confidence 99999999872 5999999999999999985
Q ss_pred CCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCC-ceEEEEecCCCCeEEEEEecCCCcEEEEE
Q 000251 550 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSA 628 (1784)
Q Consensus 550 ~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tg-klv~~L~gH~~~VtsLafSPdd~~lLaSg 628 (1784)
+.++..+.+|...|.++.+... ..+++|+.|++|++||+.++ +++.++.+|...|..+.+ ...+|+++
T Consensus 361 -------~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~---~~~~Lvs~ 429 (537)
T KOG0274|consen 361 -------GKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL---RDNFLVSS 429 (537)
T ss_pred -------ceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc---ccceeEec
Confidence 4456677889999999988776 89999999999999999999 999999999999988876 44788999
Q ss_pred eCCCcEEEEeCCCCceEEEEec-cCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccccc
Q 000251 629 GYDGKTIVWDIWEGIPIRIYEI-SRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDA 690 (1784)
Q Consensus 629 s~DG~IrIWDl~tG~~l~tl~~-~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~~~~~ 690 (1784)
+.|++|++||+.++.+++++.+ +.+.|..+++. ...+++++.+|.+.+||+.+++.....
T Consensus 430 ~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 430 SADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 9999999999999999999998 56888888887 567888999999999999998877644
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-23 Score=257.69 Aligned_cols=266 Identities=21% Similarity=0.279 Sum_probs=204.6
Q ss_pred CCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEE-------------EEEecCCCCeEEEEEcC-CCCEEEEEeCCC
Q 000251 269 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL-------------ASCRGHEGDITDLAVSS-NNALVASASNDC 334 (1784)
Q Consensus 269 H~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l-------------~tL~gH~~~VtsLafSp-Dg~lLASGS~DG 334 (1784)
|-..|....+++++..+++++.+..+..|+...|..+ ..+.+|.+.|++++|+| ++.+||+|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3345666777778777777777777778876544332 13678999999999999 889999999999
Q ss_pred EEEEEECCCC-------CeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCC
Q 000251 335 IIRVWRLPDG-------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 407 (1784)
Q Consensus 335 tIrVWDl~tg-------k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~ 407 (1784)
+|+|||+.++ .++..+.+|...|.+++|+|++. .+|++++.|++|+|||+.++.....+
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~--~iLaSgs~DgtVrIWDl~tg~~~~~l------------ 164 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM--NVLASAGADMVVNVWDVERGKAVEVI------------ 164 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC--CEEEEEeCCCEEEEEECCCCeEEEEE------------
Confidence 9999999765 35778899999999999999863 28999999999999999987654433
Q ss_pred CCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCc-eEEEEccCccccc
Q 000251 408 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDV-NYVQFSGCAVASR 486 (1784)
Q Consensus 408 ~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V-~sLafSpdglas~ 486 (1784)
..|...|.+++|+|+|.+|++|+.|+.|+|||++++ ..+..+.+|.+.+ ..+.|.+++
T Consensus 165 --------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg---------~~v~tl~~H~~~~~~~~~w~~~~---- 223 (493)
T PTZ00421 165 --------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG---------TIVSSVEAHASAKSQRCLWAKRK---- 223 (493)
T ss_pred --------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC---------cEEEEEecCCCCcceEEEEcCCC----
Confidence 246778999999999999999999999999999763 3566677887653 456677654
Q ss_pred ccccCCCCCCCCCccccccccCCeEEEEe----CCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCcee
Q 000251 487 FSLADSSKEDSTPKFKNSWFCHDNIVTCS----RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 562 (1784)
Q Consensus 487 ~~~~~s~~~~~~~~~~~~~~~~~~LVSgS----~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~ 562 (1784)
..+++++ .|+.|++||+++... +...
T Consensus 224 ----------------------~~ivt~G~s~s~Dr~VklWDlr~~~~----------------------------p~~~ 253 (493)
T PTZ00421 224 ----------------------DLIITLGCSKSQQRQIMLWDTRKMAS----------------------------PYST 253 (493)
T ss_pred ----------------------CeEEEEecCCCCCCeEEEEeCCCCCC----------------------------ceeE
Confidence 4555543 589999999985220 1111
Q ss_pred c-cCCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEECCCCceEEEEec-CCCCeEEEEEec
Q 000251 563 I-LPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADGSLVHSLTG-HTESTYVLDVHP 619 (1784)
Q Consensus 563 l-~~h~~~VtsVafSPDG~~LaSgs-~DGsI~VWDl~tgklv~~L~g-H~~~VtsLafSP 619 (1784)
. ......+....|++++.+|++|+ .|+.|++||+.+++++..+.. +...+..++|.|
T Consensus 254 ~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 254 VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 1 12234566778999999999887 599999999999988876654 445677888887
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-24 Score=269.37 Aligned_cols=313 Identities=20% Similarity=0.283 Sum_probs=244.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEe--CCCEEEEEECCC------------CCeeEEecCCCCceEEEEecCCCCccEEEEEEe
Q 000251 311 HEGDITDLAVSSNNALVASAS--NDCIIRVWRLPD------------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 376 (1784)
Q Consensus 311 H~~~VtsLafSpDg~lLASGS--~DGtIrVWDl~t------------gk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs 376 (1784)
+...|.+|+.+|||..+|||+ .||.++||+... .+.+.++..|.+.|+|+.|+|||. +||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~---~lAsGS 88 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS---YLASGS 88 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC---eEeecc
Confidence 345689999999999999999 899999998632 244567778999999999999998 999999
Q ss_pred CCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCC
Q 000251 377 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDS 456 (1784)
Q Consensus 377 ~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s 456 (1784)
+|+.|.||..... ...... ...........+.......+|...|..++|+|++.+||+++.|++|.||+..+
T Consensus 89 DD~~v~iW~~~~~-~~~~~f-gs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t------ 160 (942)
T KOG0973|consen 89 DDRLVMIWERAEI-GSGTVF-GSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT------ 160 (942)
T ss_pred CcceEEEeeeccc-CCcccc-cccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc------
Confidence 9999999998741 111111 00001111222333455677999999999999999999999999999999976
Q ss_pred CCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccccc
Q 000251 457 DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 536 (1784)
Q Consensus 457 ~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~ 536 (1784)
...+..+.+|.+.|..+.|.|-| .+|++-+.|++|+||++.+-.
T Consensus 161 ---F~~~~vl~~H~s~VKGvs~DP~G--------------------------ky~ASqsdDrtikvwrt~dw~------- 204 (942)
T KOG0973|consen 161 ---FELLKVLRGHQSLVKGVSWDPIG--------------------------KYFASQSDDRTLKVWRTSDWG------- 204 (942)
T ss_pred ---ceeeeeeecccccccceEECCcc--------------------------CeeeeecCCceEEEEEcccce-------
Confidence 45788999999999999999987 799999999999999865411
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe----cCCeEEEEECCCCceEEEEecCCCCe
Q 000251 537 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI----MDCRICVWNAADGSLVHSLTGHTEST 612 (1784)
Q Consensus 537 w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs----~DGsI~VWDl~tgklv~~L~gH~~~V 612 (1784)
....+. .+. .-.....-+..+.|||||.+|++.. .-.++.|.+-.+.+.-..|-||.+++
T Consensus 205 --i~k~It-------------~pf-~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~ 268 (942)
T KOG0973|consen 205 --IEKSIT-------------KPF-EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPV 268 (942)
T ss_pred --eeEeec-------------cch-hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCce
Confidence 111100 000 0011234577889999999999843 22368899988888888999999999
Q ss_pred EEEEEecC------C------C----cEEEEEeCCCcEEEEeCCCCceEEEEe-ccCcceEEEEEcCCCCEEEEEeCCCe
Q 000251 613 YVLDVHPF------N------P----RIAMSAGYDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQ 675 (1784)
Q Consensus 613 tsLafSPd------d------~----~lLaSgs~DG~IrIWDl~tG~~l~tl~-~~~~~ItslafSPDGk~LAsgs~DG~ 675 (1784)
.++.|+|. . . .++|+|+.|++|-||.....+++..+. .....|.+++|+|||..|++++.||+
T Consensus 269 evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGt 348 (942)
T KOG0973|consen 269 EVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGT 348 (942)
T ss_pred EEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCe
Confidence 99999972 1 1 178999999999999998777776554 23458999999999999999999999
Q ss_pred EEEEECCCCcc
Q 000251 676 LYILNTGQGES 686 (1784)
Q Consensus 676 I~IWdl~sGe~ 686 (1784)
|.++.+...+.
T Consensus 349 V~~i~Fee~El 359 (942)
T KOG0973|consen 349 VALIHFEEKEL 359 (942)
T ss_pred EEEEEcchHHh
Confidence 99999987543
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=246.04 Aligned_cols=298 Identities=19% Similarity=0.303 Sum_probs=241.9
Q ss_pred EEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEE----E-------------E-ecCCCCeEEEEEcCCC
Q 000251 263 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLA----S-------------C-RGHEGDITDLAVSSNN 324 (1784)
Q Consensus 263 l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~----t-------------L-~gH~~~VtsLafSpDg 324 (1784)
++.+..|.-+|.||+++|+++++++++.+|+|.=|++.+|+... + - ++|...|.++++++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 56778899999999999999999999999999999998887431 1 1 2788999999999999
Q ss_pred CEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcc
Q 000251 325 ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 404 (1784)
Q Consensus 325 ~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~ 404 (1784)
++||+|+.|..|.||+..+++.+..+.+|.+.|.+++|-.... .|++++.|++|++|++.....+.++
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~---~lys~s~Drsvkvw~~~~~s~vetl--------- 282 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTS---ELYSASADRSVKVWSIDQLSYVETL--------- 282 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCcc---ceeeeecCCceEEEehhHhHHHHHH---------
Confidence 9999999999999999999999999999999999999987665 8999999999999999877665554
Q ss_pred cCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccc
Q 000251 405 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVA 484 (1784)
Q Consensus 405 ~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdgla 484 (1784)
.+|...|..|....-++.+.+|+.|+++++|++.. .....+.+|.+.+.|++|-.+
T Consensus 283 -----------yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e----------esqlifrg~~~sidcv~~In~--- 338 (479)
T KOG0299|consen 283 -----------YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE----------ESQLIFRGGEGSIDCVAFIND--- 338 (479)
T ss_pred -----------hCCccceeeechhcccceEEeccccceeEEEeccc----------cceeeeeCCCCCeeeEEEecc---
Confidence 46889999999998899999999999999999932 223467888999999999865
Q ss_pred ccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceecc
Q 000251 485 SRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 564 (1784)
Q Consensus 485 s~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~ 564 (1784)
..|++|+.+|.|.+|++...++...... ...+ .+.....
T Consensus 339 ------------------------~HfvsGSdnG~IaLWs~~KKkplf~~~~-----AHgv------------~~~~~~~ 377 (479)
T KOG0299|consen 339 ------------------------EHFVSGSDNGSIALWSLLKKKPLFTSRL-----AHGV------------IPELDPV 377 (479)
T ss_pred ------------------------cceeeccCCceEEEeeecccCceeEeec-----cccc------------cCCcccc
Confidence 5999999999999999986553221110 0000 0000112
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCC----ceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000251 565 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG----SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638 (1784)
Q Consensus 565 ~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tg----klv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD 638 (1784)
.+...|++++..|...++++|+.+|.|++|-+..| .++..+. -.+-|++|+|++++.++++..|....+-=|-
T Consensus 378 ~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 378 NGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred ccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceee
Confidence 23368999999999999999999999999999887 4455555 5678999999996666777777666654443
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=253.86 Aligned_cols=277 Identities=19% Similarity=0.337 Sum_probs=236.8
Q ss_pred EEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecC-C
Q 000251 275 CAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG-H 353 (1784)
Q Consensus 275 ~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~g-H 353 (1784)
-+.|+ ....||+|.. ..|.+|+..++........+...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |
T Consensus 182 lldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred Hhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 34577 4457777753 5799999999997777666689999999999999999999999999999999999999998 9
Q ss_pred CCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCE
Q 000251 354 TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV 433 (1784)
Q Consensus 354 ~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~ 433 (1784)
...|-+++|... .+.+|+.||.|.++|++..+.... ...+|...|..+.|++|+.+
T Consensus 260 ~~rvg~laW~~~-----~lssGsr~~~I~~~dvR~~~~~~~-------------------~~~~H~qeVCgLkws~d~~~ 315 (484)
T KOG0305|consen 260 ASRVGSLAWNSS-----VLSSGSRDGKILNHDVRISQHVVS-------------------TLQGHRQEVCGLKWSPDGNQ 315 (484)
T ss_pred CceeEEEeccCc-----eEEEecCCCcEEEEEEecchhhhh-------------------hhhcccceeeeeEECCCCCe
Confidence 999999999943 799999999999999987764332 14568999999999999999
Q ss_pred EEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEE
Q 000251 434 FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT 513 (1784)
Q Consensus 434 LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVS 513 (1784)
||+|+.|+.+.|||... ..++..+..|...|.+++|+|-. ...||+
T Consensus 316 lASGgnDN~~~Iwd~~~---------~~p~~~~~~H~aAVKA~awcP~q-------------------------~~lLAs 361 (484)
T KOG0305|consen 316 LASGGNDNVVFIWDGLS---------PEPKFTFTEHTAAVKALAWCPWQ-------------------------SGLLAT 361 (484)
T ss_pred eccCCCccceEeccCCC---------ccccEEEeccceeeeEeeeCCCc-------------------------cCceEE
Confidence 99999999999999943 34567889999999999999864 468888
Q ss_pred Ee--CCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE--EecCC
Q 000251 514 CS--RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA--AIMDC 589 (1784)
Q Consensus 514 gS--~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS--gs~DG 589 (1784)
|+ .|++|++||..++.. .........|..|.|++..+-|++ |..++
T Consensus 362 GGGs~D~~i~fwn~~~g~~------------------------------i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 362 GGGSADRCIKFWNTNTGAR------------------------------IDSVDTGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred cCCCcccEEEEEEcCCCcE------------------------------ecccccCCceeeEEEcCCCCEEEEecCCCCC
Confidence 64 599999999986442 223345678999999999987776 55677
Q ss_pred eEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 000251 590 RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 642 (1784)
Q Consensus 590 sI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG 642 (1784)
.|.||+..+.+.+..+.+|...|..++++| ++..+++|+.|.++++|++-..
T Consensus 412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cEEEEeccccceeeeecCCcceeEEEEECC-CCCEEEEecccCcEEeccccCC
Confidence 899999999999999999999999999999 6788899999999999999764
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-24 Score=238.50 Aligned_cols=285 Identities=19% Similarity=0.296 Sum_probs=243.3
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEec--------CCCCceEEEEecCCCCccEEEEEEeCCCcE
Q 000251 310 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR--------GHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 381 (1784)
Q Consensus 310 gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~--------gH~~~VtsLafSPdg~~~~~LaSgs~DGtI 381 (1784)
+....+.|..|+|||++|++|+.||.|.||+..+|+..+.++ -+..+|.|+.|+.|.. .|++|+.||.|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE---MlAsGsqDGkI 287 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE---MLASGSQDGKI 287 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH---HhhccCcCCcE
Confidence 456678899999999999999999999999999997655442 4678999999999987 89999999999
Q ss_pred EEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCc
Q 000251 382 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 461 (1784)
Q Consensus 382 rIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~ 461 (1784)
++|.+.+|.++.++. ..|...|+|+.|+.|+..+++++.|.+++|.-+.+ ++
T Consensus 288 KvWri~tG~ClRrFd-------------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS---------GK 339 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFD-------------------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS---------GK 339 (508)
T ss_pred EEEEEecchHHHHhh-------------------hhhccCeeEEEEccCcchhhcccccceEEEecccc---------ch
Confidence 999999999988873 35888899999999999999999999999998865 55
Q ss_pred ceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccc
Q 000251 462 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 541 (1784)
Q Consensus 462 ~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~ 541 (1784)
.+..+.||..-|+...|.++| ..+++++.||+|++|+..+.++...+
T Consensus 340 ~LKEfrGHsSyvn~a~ft~dG--------------------------~~iisaSsDgtvkvW~~KtteC~~Tf------- 386 (508)
T KOG0275|consen 340 CLKEFRGHSSYVNEATFTDDG--------------------------HHIISASSDGTVKVWHGKTTECLSTF------- 386 (508)
T ss_pred hHHHhcCccccccceEEcCCC--------------------------CeEEEecCCccEEEecCcchhhhhhc-------
Confidence 788899999999999999997 79999999999999999875532211
Q ss_pred cccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC-CCEEEEEecCCeEEEEECCCCceEEEEecC---CCCeEEEEE
Q 000251 542 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD-NRFVLAAIMDCRICVWNAADGSLVHSLTGH---TESTYVLDV 617 (1784)
Q Consensus 542 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD-G~~LaSgs~DGsI~VWDl~tgklv~~L~gH---~~~VtsLaf 617 (1784)
+..+....|+.+..-|. -..++++...++|+|.++ .|+.++.+... .+...+.+.
T Consensus 387 --------------------k~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 387 --------------------KPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred --------------------cCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEe
Confidence 11224456777766664 457788888889999997 58888888532 345667788
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000251 618 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 680 (1784)
Q Consensus 618 SPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWd 680 (1784)
+| .+.++.+.+.|+.++.|.+.+|.+-+++..|...+..++-+|..+.||+-+.||.+++|.
T Consensus 446 Sp-kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SP-KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cC-CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 99 778888999999999999999999999999999999999999999999999999999995
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-24 Score=230.81 Aligned_cols=282 Identities=23% Similarity=0.381 Sum_probs=230.5
Q ss_pred EEEEECC--CCCEE-EEE-----cCCcEEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCC-CEEEEEeCCCEEEEEECC
Q 000251 274 YCAIFDR--SGRYV-ITG-----SDDRLVKIWSMETAYCLASCR--GHEGDITDLAVSSNN-ALVASASNDCIIRVWRLP 342 (1784)
Q Consensus 274 t~VaFSP--DG~~L-ATG-----S~DGtIkIWDl~Tgk~l~tL~--gH~~~VtsLafSpDg-~lLASGS~DGtIrVWDl~ 342 (1784)
+++.||| .+++. |++ ...|.+.|-++..++-+..+. .-.+.+.+++|+++. ..+++++.||+++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 6788999 34332 232 236899999997555555544 246789999999864 478888899999999964
Q ss_pred C-CCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCc
Q 000251 343 D-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 421 (1784)
Q Consensus 343 t-gk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~ 421 (1784)
- ..++..++.|...|.++.|.+..+ ..+++++.||+|++|+...++-+.++ .+|...
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r--~~~ltsSWD~TiKLW~~~r~~Sv~Tf--------------------~gh~~~ 149 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRR--RIFLTSSWDGTIKLWDPNRPNSVQTF--------------------NGHNSC 149 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccc--eeEEeeccCCceEeecCCCCcceEee--------------------cCCccE
Confidence 3 368999999999999999999765 47888899999999999877655554 458889
Q ss_pred eEEEEECC-CCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCc
Q 000251 422 IFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 500 (1784)
Q Consensus 422 V~sLafSp-dG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~ 500 (1784)
|...+|+| .+++|++++.|+++++||++.+ ++.+. +..|...|.++.|+.-.
T Consensus 150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~--------gk~~~-i~ah~~Eil~cdw~ky~------------------ 202 (311)
T KOG0277|consen 150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSP--------GKFMS-IEAHNSEILCCDWSKYN------------------ 202 (311)
T ss_pred EEEEecCCCCCCeEEEccCCceEEEEEecCC--------CceeE-EEeccceeEeecccccC------------------
Confidence 99999999 6789999999999999999742 33443 88999999999998643
Q ss_pred cccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC-
Q 000251 501 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN- 579 (1784)
Q Consensus 501 ~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG- 579 (1784)
+..++||+.|+.|++||++..+ .++..+.+|.-.|..|.|||..
T Consensus 203 -------~~vl~Tg~vd~~vr~wDir~~r----------------------------~pl~eL~gh~~AVRkvk~Sph~~ 247 (311)
T KOG0277|consen 203 -------HNVLATGGVDNLVRGWDIRNLR----------------------------TPLFELNGHGLAVRKVKFSPHHA 247 (311)
T ss_pred -------CcEEEecCCCceEEEEehhhcc----------------------------ccceeecCCceEEEEEecCcchh
Confidence 5789999999999999999622 3456678899999999999965
Q ss_pred CEEEEEecCCeEEEEECCCC-ceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000251 580 RFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639 (1784)
Q Consensus 580 ~~LaSgs~DGsI~VWDl~tg-klv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 639 (1784)
..|++++.|-+++|||...+ .++.+...|+.-|..+.|++..+.++|+++.|+.++||+.
T Consensus 248 ~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 248 SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 57789999999999999854 4566777899999999999999999999999999999984
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=233.12 Aligned_cols=295 Identities=18% Similarity=0.243 Sum_probs=234.1
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCC------------C------CeeEEecCCCCceEEEEecCCCC
Q 000251 306 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD------------G------LPISVLRGHTAAVTAIAFSPRPG 367 (1784)
Q Consensus 306 ~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~t------------g------k~i~~L~gH~~~VtsLafSPdg~ 367 (1784)
..+..|.+++.+.+|++||.++|+|+.|..|+|.|++. | -.+++|-.|...|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 34567999999999999999999999999999999851 1 24678888999999999999876
Q ss_pred ccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEc
Q 000251 368 SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447 (1784)
Q Consensus 368 ~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWD 447 (1784)
.|++|+.|++|++||+........+.. ......|.++.|+|.|.+|++|....++++||
T Consensus 186 ---ILiS~srD~tvKlFDfsK~saKrA~K~------------------~qd~~~vrsiSfHPsGefllvgTdHp~~rlYd 244 (430)
T KOG0640|consen 186 ---ILISGSRDNTVKLFDFSKTSAKRAFKV------------------FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYD 244 (430)
T ss_pred ---eEEeccCCCeEEEEecccHHHHHHHHH------------------hhccceeeeEeecCCCceEEEecCCCceeEEe
Confidence 999999999999999975543322211 12345699999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCC
Q 000251 448 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 527 (1784)
Q Consensus 448 l~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t 527 (1784)
+.+.++..... .-.+|.+.|+++.+++.+ .+.++++.||.|+|||--+
T Consensus 245 v~T~Qcfvsan------Pd~qht~ai~~V~Ys~t~--------------------------~lYvTaSkDG~IklwDGVS 292 (430)
T KOG0640|consen 245 VNTYQCFVSAN------PDDQHTGAITQVRYSSTG--------------------------SLYVTASKDGAIKLWDGVS 292 (430)
T ss_pred ccceeEeeecC------cccccccceeEEEecCCc--------------------------cEEEEeccCCcEEeecccc
Confidence 98765533222 235799999999999987 7899999999999999776
Q ss_pred CCCCcccccccccccccCCCCCCCCCCCCCCCceeccCC-CCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 000251 528 RRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT-PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT 606 (1784)
Q Consensus 528 ~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h-~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~ 606 (1784)
.++...+. ..| ...|.+..|+.+|+||++.+.|..+++|.+.+|+++..+.
T Consensus 293 ~rCv~t~~----------------------------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 293 NRCVRTIG----------------------------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred HHHHHHHH----------------------------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence 44322111 123 3469999999999999999999999999999999999987
Q ss_pred cCC--C---CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-ccCcceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000251 607 GHT--E---STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILN 680 (1784)
Q Consensus 607 gH~--~---~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~-~~~~~ItslafSPDGk~LAsgs~DG~I~IWd 680 (1784)
|-. + --+...|......+|.---..+.++-||..++..+..+. +|.+.+..+.-||.+.-+.+++.|-.+++|-
T Consensus 345 GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 345 GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred cCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 642 1 123344554333344333345679999999987776654 5778899999999999999999999999996
Q ss_pred C
Q 000251 681 T 681 (1784)
Q Consensus 681 l 681 (1784)
-
T Consensus 425 r 425 (430)
T KOG0640|consen 425 R 425 (430)
T ss_pred e
Confidence 4
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-23 Score=249.61 Aligned_cols=282 Identities=23% Similarity=0.383 Sum_probs=243.2
Q ss_pred ceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEE--EEecCCCCeEE-EEEcC-CCCEEEEEeCCCE
Q 000251 260 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLA--SCRGHEGDITD-LAVSS-NNALVASASNDCI 335 (1784)
Q Consensus 260 ~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~--tL~gH~~~Vts-LafSp-Dg~lLASGS~DGt 335 (1784)
+++-+.|.||...|..+++.+.. .++++|.||+++||+-..+..+. .+.+|.+.|.+ +++-+ ++-.|++|+.|++
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 56778999999999999987655 89999999999999987665554 46778888887 88875 5557999999999
Q ss_pred EEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCC
Q 000251 336 IRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 415 (1784)
Q Consensus 336 IrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~ 415 (1784)
|.+|.+.+..++.+|.+|...|.++....++ .|++|+.|.++++|-...-. ...
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~----~~iSgSWD~TakvW~~~~l~----------------------~~l 136 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG----TLISGSWDSTAKVWRIGELV----------------------YSL 136 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcC----ceEecccccceEEecchhhh----------------------ccc
Confidence 9999999999999999999999999988776 59999999999999764321 124
Q ss_pred CCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCC
Q 000251 416 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 495 (1784)
Q Consensus 416 ~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~ 495 (1784)
.+|...|+++++-|++ .+++|+.|.+|++|.- +..+.++.+|.+.|..+++-+++
T Consensus 137 ~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-----------~~~l~tf~gHtD~VRgL~vl~~~------------- 191 (745)
T KOG0301|consen 137 QGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-----------GTLLKTFSGHTDCVRGLAVLDDS------------- 191 (745)
T ss_pred CCcchheeeeeecCCC-cEEeccCcceeeeccC-----------CchhhhhccchhheeeeEEecCC-------------
Confidence 6799999999999988 8999999999999987 44788999999999999998864
Q ss_pred CCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEE
Q 000251 496 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 575 (1784)
Q Consensus 496 ~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf 575 (1784)
.|++|+.||.|++|++. +..+.+..+|..-|.++..
T Consensus 192 --------------~flScsNDg~Ir~w~~~------------------------------ge~l~~~~ghtn~vYsis~ 227 (745)
T KOG0301|consen 192 --------------HFLSCSNDGSIRLWDLD------------------------------GEVLLEMHGHTNFVYSISM 227 (745)
T ss_pred --------------CeEeecCCceEEEEecc------------------------------CceeeeeeccceEEEEEEe
Confidence 89999999999999985 4566778899999999999
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000251 576 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 641 (1784)
Q Consensus 576 SPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t 641 (1784)
..++..|++++.|++++||+.. .+++.+.-..-.|+++.+-+ ++.+ ++|+.||.|+||....
T Consensus 228 ~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~-NgDI-vvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL-NGDI-VVGGSDGRVRVFTVDK 289 (745)
T ss_pred cCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee-CCCE-EEeccCceEEEEEecc
Confidence 9999999999999999999975 88888886666899999887 5555 4788999999998763
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-23 Score=238.01 Aligned_cols=284 Identities=21% Similarity=0.327 Sum_probs=244.3
Q ss_pred CCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEe
Q 000251 271 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 350 (1784)
Q Consensus 271 ~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L 350 (1784)
..|.++...|....++||+.|.++.++|..+++.+.++.||...|+.+.|+++...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46888888888789999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred cCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCC
Q 000251 351 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 430 (1784)
Q Consensus 351 ~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpd 430 (1784)
..|..+|+.+..+|.|. ||++++.||+..+.|++++.++...... ...-.+++++|+||
T Consensus 300 ~~h~~~V~~ls~h~tge---YllsAs~d~~w~Fsd~~~g~~lt~vs~~------------------~s~v~~ts~~fHpD 358 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGE---YLLSASNDGTWAFSDISSGSQLTVVSDE------------------TSDVEYTSAAFHPD 358 (506)
T ss_pred ccccccceeeeeccCCc---EEEEecCCceEEEEEccCCcEEEEEeec------------------cccceeEEeeEcCC
Confidence 99999999999999998 9999999999999999999876655321 12345899999999
Q ss_pred CCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCe
Q 000251 431 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 510 (1784)
Q Consensus 431 G~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~ 510 (1784)
|.+|++|..||.|+|||+..+ ..+..+.+|+++|..|+|+-+| -+
T Consensus 359 gLifgtgt~d~~vkiwdlks~---------~~~a~Fpght~~vk~i~FsENG--------------------------Y~ 403 (506)
T KOG0289|consen 359 GLIFGTGTPDGVVKIWDLKSQ---------TNVAKFPGHTGPVKAISFSENG--------------------------YW 403 (506)
T ss_pred ceEEeccCCCceEEEEEcCCc---------cccccCCCCCCceeEEEeccCc--------------------------eE
Confidence 999999999999999999653 3567889999999999999988 48
Q ss_pred EEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCe
Q 000251 511 IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCR 590 (1784)
Q Consensus 511 LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGs 590 (1784)
|++++.|+.|++||++..+... .........|.++.|.+.|++|+.++.|-.
T Consensus 404 Lat~add~~V~lwDLRKl~n~k----------------------------t~~l~~~~~v~s~~fD~SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 404 LATAADDGSVKLWDLRKLKNFK----------------------------TIQLDEKKEVNSLSFDQSGTYLGIAGSDLQ 455 (506)
T ss_pred EEEEecCCeEEEEEehhhcccc----------------------------eeeccccccceeEEEcCCCCeEEeecceeE
Confidence 9999999999999999532110 011123347999999999999999988877
Q ss_pred EEEEECC--CCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000251 591 ICVWNAA--DGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639 (1784)
Q Consensus 591 I~VWDl~--tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 639 (1784)
|++++-. +..++..+..|.+..+++.|.. ..++++++|.|..++|+.+
T Consensus 456 Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~-~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 456 VYICKKKTKSWTEIKELADHSGLSTGVRFGE-HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEEecccccceeeehhhhcccccceeeecc-cceEEeeccchhheEEeec
Confidence 7777643 4677888888998899999977 6789999999999888764
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-24 Score=242.54 Aligned_cols=291 Identities=20% Similarity=0.327 Sum_probs=236.0
Q ss_pred EEEEecCCCCeEEEEEcCCC-CEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEE
Q 000251 305 LASCRGHEGDITDLAVSSNN-ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383 (1784)
Q Consensus 305 l~tL~gH~~~VtsLafSpDg-~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrI 383 (1784)
+..|.||..+|.|++=+|.. ..+|+|+.||.|+|||+.+-.++.++..|.+.|.+|++... .+++++.|.+|+.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~-----~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQT-----SFFTVGDDKTVKQ 133 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEeccc-----ceEEecCCcceee
Confidence 44567899999999999987 68999999999999999999999999999999999999882 6899999999999
Q ss_pred EecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcce
Q 000251 384 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 463 (1784)
Q Consensus 384 WDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i 463 (1784)
|-+... ...++. ....+..|.-+..+..++++|.+ |.|||... ..++
T Consensus 134 wk~~~~-p~~til---------------------g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R---------~~Pv 180 (433)
T KOG0268|consen 134 WKIDGP-PLHTIL---------------------GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQR---------DNPV 180 (433)
T ss_pred eeccCC-cceeee---------------------ccccccccccccccccccccCce--eeeccccc---------CCcc
Confidence 988652 222221 23345666666677888888765 99999854 3456
Q ss_pred eeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccc
Q 000251 464 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 543 (1784)
Q Consensus 464 ~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l 543 (1784)
..+.--...|.++.|+|.. ...|++|+.|+.|.+||+++..+..++
T Consensus 181 ~smswG~Dti~svkfNpvE-------------------------TsILas~~sDrsIvLyD~R~~~Pl~KV--------- 226 (433)
T KOG0268|consen 181 SSMSWGADSISSVKFNPVE-------------------------TSILASCASDRSIVLYDLRQASPLKKV--------- 226 (433)
T ss_pred ceeecCCCceeEEecCCCc-------------------------chheeeeccCCceEEEecccCCcccee---------
Confidence 6677777889999999865 258899999999999999974422111
Q ss_pred cCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCC-CceEEEEecCCCCeEEEEEecCCC
Q 000251 544 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNP 622 (1784)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~t-gklv~~L~gH~~~VtsLafSPdd~ 622 (1784)
. ....-+.|+|+|.+-.+++|+.|..++.||+.. ..++....+|...|.+++||| -|
T Consensus 227 --------------------i-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-tG 284 (433)
T KOG0268|consen 227 --------------------I-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-TG 284 (433)
T ss_pred --------------------e-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC-Cc
Confidence 1 123457899999888889999999999999987 457788899999999999999 55
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEeccC-cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccc
Q 000251 623 RIAMSAGYDGKTIVWDIWEGIPIRIYEISR-FRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKD 689 (1784)
Q Consensus 623 ~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~-~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~~~~ 689 (1784)
+-+++|+.|.+|+||.+..+....++.... ..|.++.||.|.+++++|++|+.|++|.....+.+..
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv 352 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGV 352 (433)
T ss_pred chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCC
Confidence 667799999999999998887665554322 3699999999999999999999999999877666543
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=226.83 Aligned_cols=282 Identities=18% Similarity=0.304 Sum_probs=228.4
Q ss_pred EEEEEcC--CCCEEEEE------eCCCEEEEEECCCCCeeEEecC--CCCceEEEEecCCCCccEEEEEEeCCCcEEEEe
Q 000251 316 TDLAVSS--NNALVASA------SNDCIIRVWRLPDGLPISVLRG--HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 385 (1784)
Q Consensus 316 tsLafSp--Dg~lLASG------S~DGtIrVWDl~tgk~i~~L~g--H~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWD 385 (1784)
.++.||| .+++.+++ ...|.+.|.++..++-+..+.. -...+..++|++... ..+++++.||++++||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e--~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHE--NQVIAASGDGSLRLFD 89 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCc--ceEEEEecCceEEEec
Confidence 5788998 44433322 2368999999876655554432 356799999999865 4899999999999999
Q ss_pred cCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECC-CCCEEEEeeCCceEEEEcCCCCCCCCCCCCCccee
Q 000251 386 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 464 (1784)
Q Consensus 386 l~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSp-dG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~ 464 (1784)
+.... .|....+.|...|.++.|++ ++..+++++-|++|++|+... ...+.
T Consensus 90 ~~~~s-------------------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r---------~~Sv~ 141 (311)
T KOG0277|consen 90 LTMPS-------------------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR---------PNSVQ 141 (311)
T ss_pred cCCCC-------------------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC---------CcceE
Confidence 54222 23445667899999999998 566788889999999999854 34577
Q ss_pred eecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccccccccccccc
Q 000251 465 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 544 (1784)
Q Consensus 465 ~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~ 544 (1784)
++.+|...|...+|+|.. ++.++++|.||++++||++.
T Consensus 142 Tf~gh~~~Iy~a~~sp~~-------------------------~nlfas~Sgd~~l~lwdvr~----------------- 179 (311)
T KOG0277|consen 142 TFNGHNSCIYQAAFSPHI-------------------------PNLFASASGDGTLRLWDVRS----------------- 179 (311)
T ss_pred eecCCccEEEEEecCCCC-------------------------CCeEEEccCCceEEEEEecC-----------------
Confidence 899999999999999975 57999999999999999884
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCeeEEEEcC-CCCEEEEEecCCeEEEEECCCC-ceEEEEecCCCCeEEEEEecCCC
Q 000251 545 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNP 622 (1784)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP-DG~~LaSgs~DGsI~VWDl~tg-klv~~L~gH~~~VtsLafSPdd~ 622 (1784)
.+....+..|...|.++.|+. +...|+||+.|+.|++||+++- .++..+.+|.-.|..|.|||...
T Consensus 180 ------------~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~ 247 (311)
T KOG0277|consen 180 ------------PGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA 247 (311)
T ss_pred ------------CCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh
Confidence 122233667888999999997 5567789999999999999874 57889999999999999999888
Q ss_pred cEEEEEeCCCcEEEEeCCCC-ceEEEEeccCcceEEEEEcC-CCCEEEEEeCCCeEEEEEC
Q 000251 623 RIAMSAGYDGKTIVWDIWEG-IPIRIYEISRFRLVDGKFSP-DGASIILSDDVGQLYILNT 681 (1784)
Q Consensus 623 ~lLaSgs~DG~IrIWDl~tG-~~l~tl~~~~~~ItslafSP-DGk~LAsgs~DG~I~IWdl 681 (1784)
.+||+++.|-+++|||...+ .++.++..|..-+..+.||+ ++.++|+++-|+.++||+.
T Consensus 248 ~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 248 SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99999999999999999844 56677776777788899988 5779999999999999984
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=221.09 Aligned_cols=290 Identities=16% Similarity=0.236 Sum_probs=236.3
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeC--CCc
Q 000251 303 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD--DGT 380 (1784)
Q Consensus 303 k~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~--DGt 380 (1784)
+..+.+....+.|.+|.|+++|.+|++++.|.+|+|||..+|+.+.++..+...|..++|..... .++.++. |.+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~---~~i~sStk~d~t 81 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSN---TVIHSSTKEDDT 81 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCc---eEEEccCCCCCc
Confidence 34455666678999999999999999999999999999999999999998888899999987765 5666655 889
Q ss_pred EEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCC
Q 000251 381 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 460 (1784)
Q Consensus 381 IrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~ 460 (1784)
|+..++.+.+.++.+ .+|...|.+|+.+|-+..+++++.|++|++||++..++.
T Consensus 82 IryLsl~dNkylRYF--------------------~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq------ 135 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYF--------------------PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ------ 135 (311)
T ss_pred eEEEEeecCceEEEc--------------------CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc------
Confidence 999999998877665 479999999999999999999999999999999864431
Q ss_pred cceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccccccccc
Q 000251 461 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 540 (1784)
Q Consensus 461 ~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~ 540 (1784)
..+ +...-..++|.|.| -++|++.....|++||++.-.
T Consensus 136 ---g~l--~~~~~pi~AfDp~G--------------------------LifA~~~~~~~IkLyD~Rs~d----------- 173 (311)
T KOG1446|consen 136 ---GLL--NLSGRPIAAFDPEG--------------------------LIFALANGSELIKLYDLRSFD----------- 173 (311)
T ss_pred ---eEE--ecCCCcceeECCCC--------------------------cEEEEecCCCeEEEEEecccC-----------
Confidence 111 12223457888887 367777777799999999622
Q ss_pred ccccCCCCCCCCCCCCCCCceecc---CCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCe---EE
Q 000251 541 YHLKVPPPPMPPQPPRGGPRQRIL---PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTEST---YV 614 (1784)
Q Consensus 541 ~~l~~~~~~~~~~~~~~~~~~~l~---~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~V---ts 614 (1784)
.++...+. ......+.+.|||||++|+.++..+.+++.|.-+|..+.++.++...- ..
T Consensus 174 ----------------kgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 174 ----------------KGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred ----------------CCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 11111111 335678999999999999999999999999999999999998876543 46
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEec-cCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000251 615 LDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI-SRFRLVDGKFSPDGASIILSDDVGQLYILNTG 682 (1784)
Q Consensus 615 LafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~-~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~ 682 (1784)
..|+| +++++++|+.||+|.+|++.+|..+..+.+ +.+++.++.|+|.-.++|+++. .+.+|=..
T Consensus 238 a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw~p~ 303 (311)
T KOG1446|consen 238 ATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFWLPD 303 (311)
T ss_pred EEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEEecc
Confidence 78899 788999999999999999999999999997 4778999999998877777765 56666544
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.6e-23 Score=220.20 Aligned_cols=253 Identities=19% Similarity=0.295 Sum_probs=219.7
Q ss_pred eeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEE
Q 000251 346 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 425 (1784)
Q Consensus 346 ~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sL 425 (1784)
.+..+.++.++|.++.|.-+|+ +.++++.|.+|++|+...+.++.+. .+|...|..+
T Consensus 9 r~~~l~~~qgaV~avryN~dGn---Y~ltcGsdrtvrLWNp~rg~liktY--------------------sghG~EVlD~ 65 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGN---YCLTCGSDRTVRLWNPLRGALIKTY--------------------SGHGHEVLDA 65 (307)
T ss_pred hceeecccccceEEEEEccCCC---EEEEcCCCceEEeecccccceeeee--------------------cCCCceeeec
Confidence 4567788999999999999998 9999999999999999999887766 3688999999
Q ss_pred EECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCcccccc
Q 000251 426 AFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 505 (1784)
Q Consensus 426 afSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~ 505 (1784)
+.+.|...|++|+.|..|.+||+.+ ++.++.+.+|.+.|+.++|+...
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~T---------Gkv~Rr~rgH~aqVNtV~fNees----------------------- 113 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNT---------GKVDRRFRGHLAQVNTVRFNEES----------------------- 113 (307)
T ss_pred cccccccccccCCCCceEEEEEccc---------CeeeeecccccceeeEEEecCcc-----------------------
Confidence 9999999999999999999999987 55788999999999999999765
Q ss_pred ccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEE
Q 000251 506 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 585 (1784)
Q Consensus 506 ~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSg 585 (1784)
..+++|+.|.++++||.++.. ..|++.+......|.+|..+ +..|++|
T Consensus 114 ---SVv~SgsfD~s~r~wDCRS~s---------------------------~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 114 ---SVVASGSFDSSVRLWDCRSRS---------------------------FEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred ---eEEEeccccceeEEEEcccCC---------------------------CCccchhhhhcCceeEEEec--ccEEEee
Confidence 689999999999999998633 34556666677788888774 5689999
Q ss_pred ecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcce--EEEEEcCC
Q 000251 586 IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRL--VDGKFSPD 663 (1784)
Q Consensus 586 s~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~I--tslafSPD 663 (1784)
+.||+++.||++.|++..-+-+| +|+++.|++ ++..++.++.|++|++.|-.+|++++.+.+|...- .+++++..
T Consensus 162 S~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qs 238 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQS 238 (307)
T ss_pred ccCCcEEEEEeecceeehhhcCC--cceeEEecC-CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccc
Confidence 99999999999999887776654 699999999 66677778999999999999999999999887643 46688888
Q ss_pred CCEEEEEeCCCeEEEEECCCCcccc
Q 000251 664 GASIILSDDVGQLYILNTGQGESQK 688 (1784)
Q Consensus 664 Gk~LAsgs~DG~I~IWdl~sGe~~~ 688 (1784)
...+++|++||.|++||+..+..+.
T Consensus 239 dthV~sgSEDG~Vy~wdLvd~~~~s 263 (307)
T KOG0316|consen 239 DTHVFSGSEDGKVYFWDLVDETQIS 263 (307)
T ss_pred ceeEEeccCCceEEEEEeccceeee
Confidence 8999999999999999998776543
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-22 Score=249.59 Aligned_cols=250 Identities=17% Similarity=0.207 Sum_probs=189.5
Q ss_pred EcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCEEEEEECCCCC--------eeEEecCCCCceE
Q 000251 288 GSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN-NALVASASNDCIIRVWRLPDGL--------PISVLRGHTAAVT 358 (1784)
Q Consensus 288 GS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpD-g~lLASGS~DGtIrVWDl~tgk--------~i~~L~gH~~~Vt 358 (1784)
|+.++.|+||+......+..+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667899999999888889999999999999999996 7899999999999999997642 3456789999999
Q ss_pred EEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEee
Q 000251 359 AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 438 (1784)
Q Consensus 359 sLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs 438 (1784)
+++|+|++. .+|++++.||+|+|||+++++....+. +...|.+++|+++|.+|++++
T Consensus 130 sVaf~P~g~--~iLaSgS~DgtIrIWDl~tg~~~~~i~---------------------~~~~V~SlswspdG~lLat~s 186 (568)
T PTZ00420 130 IIDWNPMNY--YIMCSSGFDSFVNIWDIENEKRAFQIN---------------------MPKKLSSLKWNIKGNLLSGTC 186 (568)
T ss_pred EEEECCCCC--eEEEEEeCCCeEEEEECCCCcEEEEEe---------------------cCCcEEEEEECCCCCEEEEEe
Confidence 999999875 356899999999999999886543331 234699999999999999999
Q ss_pred CCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCC
Q 000251 439 SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG 518 (1784)
Q Consensus 439 ~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DG 518 (1784)
.|+.|+|||++++ ..+..+.+|.+.+....+...++. ....+|++++.|+
T Consensus 187 ~D~~IrIwD~Rsg---------~~i~tl~gH~g~~~s~~v~~~~fs---------------------~d~~~IlTtG~d~ 236 (568)
T PTZ00420 187 VGKHMHIIDPRKQ---------EIASSFHIHDGGKNTKNIWIDGLG---------------------GDDNYILSTGFSK 236 (568)
T ss_pred cCCEEEEEECCCC---------cEEEEEecccCCceeEEEEeeeEc---------------------CCCCEEEEEEcCC
Confidence 9999999999763 356678889887655443321100 0125788877664
Q ss_pred ----cEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCcee--ccCCCCCeeEEEEcCCCCEEEEEecCCeEE
Q 000251 519 ----SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR--ILPTPRGVNMIVWSLDNRFVLAAIMDCRIC 592 (1784)
Q Consensus 519 ----tIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~--l~~h~~~VtsVafSPDG~~LaSgs~DGsI~ 592 (1784)
+|+|||++... .++.. +..+...+......++|.++++|+.|+.|+
T Consensus 237 ~~~R~VkLWDlr~~~----------------------------~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 237 NNMREMKLWDLKNTT----------------------------SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred CCccEEEEEECCCCC----------------------------CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 79999998411 11111 112223333444456799999999999999
Q ss_pred EEECCCCceEEEEe--cCCCCeEEEEEec
Q 000251 593 VWNAADGSLVHSLT--GHTESTYVLDVHP 619 (1784)
Q Consensus 593 VWDl~tgklv~~L~--gH~~~VtsLafSP 619 (1784)
+|++..+.+ +.+. .+..++.+++|.|
T Consensus 289 ~~e~~~~~~-~~l~~~~s~~p~~g~~f~P 316 (568)
T PTZ00420 289 YYQHSLGSI-RKVNEYKSCSPFRSFGFLP 316 (568)
T ss_pred EEEccCCcE-EeecccccCCCccceEEcc
Confidence 999987743 3332 2456788899988
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-20 Score=220.39 Aligned_cols=362 Identities=14% Similarity=0.228 Sum_probs=259.0
Q ss_pred cccccccceEEEEEccCCCCEEEEEECC--CCCEEEEE--cCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 000251 253 PSTMVQKMQNIKRVRGHRNAVYCAIFDR--SGRYVITG--SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVA 328 (1784)
Q Consensus 253 ~~~~~~~~k~l~tL~GH~~~Vt~VaFSP--DG~~LATG--S~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLA 328 (1784)
..|+..++..++.|..-...|.||+||+ .|.+|+.. +.+..+.|||++.+..+...+.-...|..+.|.|.+.-|+
T Consensus 137 riWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nli 216 (626)
T KOG2106|consen 137 RIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLI 216 (626)
T ss_pred eecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEE
Confidence 4567777888888888889999999998 35555554 4567899999999888888887788899999999777666
Q ss_pred EEeCCCEEEEEECCCCCeeEE---ecCC-CCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcc
Q 000251 329 SASNDCIIRVWRLPDGLPISV---LRGH-TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 404 (1784)
Q Consensus 329 SGS~DGtIrVWDl~tgk~i~~---L~gH-~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~ 404 (1784)
..+..|.+.+|+++.+...+. +..+ ...|.|++|.+++. +++|..+|.|.||+..+.+..+...
T Consensus 217 it~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd----viTgDS~G~i~Iw~~~~~~~~k~~~-------- 284 (626)
T KOG2106|consen 217 ITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD----VITGDSGGNILIWSKGTNRISKQVH-------- 284 (626)
T ss_pred EEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC----EEeecCCceEEEEeCCCceEEeEee--------
Confidence 666678999999988865543 3332 36799999999985 9999999999999997766544432
Q ss_pred cCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCC---CCCCcceeeecCCCCCceEEEEccC
Q 000251 405 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDS---DQPNHEIDVLSGHENDVNYVQFSGC 481 (1784)
Q Consensus 405 ~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s---~~~~~~i~~l~gH~~~V~sLafSpd 481 (1784)
.|.+.|.+++...+|.+|- |+.|..|..||-.-.+.... .+.+.......++.+ ..|--+.+
T Consensus 285 ------------aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN 349 (626)
T KOG2106|consen 285 ------------AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRN 349 (626)
T ss_pred ------------ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCc--EEEeeccc
Confidence 5889999999999997555 99999999999432111110 011111112222222 00100100
Q ss_pred cccccccccCCCCCCCCC----cccccc-----ccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCC
Q 000251 482 AVASRFSLADSSKEDSTP----KFKNSW-----FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 552 (1784)
Q Consensus 482 glas~~~~~~s~~~~~~~----~~~~~~-----~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~ 552 (1784)
.+ +........++ .....| .+.+.+++++.|+.+++|+-. ...|...
T Consensus 350 ~i-----L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~-------k~~wt~~------------ 405 (626)
T KOG2106|consen 350 FI-----LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH-------KLEWTKI------------ 405 (626)
T ss_pred eE-----EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCC-------ceeEEEE------------
Confidence 00 00000000000 000111 345789999999999999821 1233322
Q ss_pred CCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCC
Q 000251 553 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG 632 (1784)
Q Consensus 553 ~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG 632 (1784)
...++.|+.|+|.| .||.|+..|...|.|.++..++..-.. ..+++++.|+| ++.+||.|+.|+
T Consensus 406 -------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 406 -------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDN 469 (626)
T ss_pred -------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCC
Confidence 23567899999999 999999999999999999777666555 88999999999 788999999999
Q ss_pred cEEEEeCCC-CceEEEEe-ccCcceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000251 633 KTIVWDIWE-GIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNT 681 (1784)
Q Consensus 633 ~IrIWDl~t-G~~l~tl~-~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl 681 (1784)
.|+||.+.. |.....+. .+..+|+.+.||+|+++|.+-+.|-.|..|..
T Consensus 470 ~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 470 HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred eEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 999999975 44443333 22378999999999999999999999999943
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=237.31 Aligned_cols=283 Identities=18% Similarity=0.260 Sum_probs=234.0
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCc
Q 000251 312 EGDITDLAVSSNNA-LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 390 (1784)
Q Consensus 312 ~~~VtsLafSpDg~-lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~ 390 (1784)
.+.|.+|+|+|... -+|+++ .-.+.||+..+...++++......|.++.|..||. +|++|+..|.|++||+.+..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~---LlaaGD~sG~V~vfD~k~r~ 101 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGR---LLAAGDESGHVKVFDMKSRV 101 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCe---EEEccCCcCcEEEeccccHH
Confidence 46899999999554 244443 34799999988888888877889999999999997 89999999999999976543
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCC-CCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCC
Q 000251 391 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 469 (1784)
Q Consensus 391 ~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpd-G~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH 469 (1784)
.+..+ ..|..+|..+.|+|. +..|++|+.|+.+++||+.+. .....+.+|
T Consensus 102 iLR~~--------------------~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a---------~v~~~l~~h 152 (487)
T KOG0310|consen 102 ILRQL--------------------YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA---------YVQAELSGH 152 (487)
T ss_pred HHHHH--------------------hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc---------EEEEEecCC
Confidence 33333 458889999999995 467888888999999999752 235578999
Q ss_pred CCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCC
Q 000251 470 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 549 (1784)
Q Consensus 470 ~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~ 549 (1784)
++.|.+.+|+|.. +.+++|||.||.|++||+++..
T Consensus 153 tDYVR~g~~~~~~-------------------------~hivvtGsYDg~vrl~DtR~~~-------------------- 187 (487)
T KOG0310|consen 153 TDYVRCGDISPAN-------------------------DHIVVTGSYDGKVRLWDTRSLT-------------------- 187 (487)
T ss_pred cceeEeeccccCC-------------------------CeEEEecCCCceEEEEEeccCC--------------------
Confidence 9999999999864 3589999999999999999521
Q ss_pred CCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCc-eEEEEecCCCCeEEEEEecCCCcEEEEE
Q 000251 550 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSA 628 (1784)
Q Consensus 550 ~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgk-lv~~L~gH~~~VtsLafSPdd~~lLaSg 628 (1784)
.......|..+|..+.+-|.|..||+++. ..|+|||+.+|. ++..+..|...|+|+.+.. ++.-|+||
T Consensus 188 ---------~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~ 256 (487)
T KOG0310|consen 188 ---------SRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSG 256 (487)
T ss_pred ---------ceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeec
Confidence 22334568889999999999999999876 489999999654 4555555999999999988 56777899
Q ss_pred eCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000251 629 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 684 (1784)
Q Consensus 629 s~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sG 684 (1784)
|-|+.|+|||+.+-+.+..+. -.++|.+++.+||++.+++|-.+|.+.+-+....
T Consensus 257 sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 257 SLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred ccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 999999999998999998887 7789999999999999999999999988855443
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=225.40 Aligned_cols=274 Identities=19% Similarity=0.289 Sum_probs=202.5
Q ss_pred cCCCCEEEEEECC-CCCEEEEEcCCcEEEEEECCC-CeEEE-EEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCC
Q 000251 268 GHRNAVYCAIFDR-SGRYVITGSDDRLVKIWSMET-AYCLA-SCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 344 (1784)
Q Consensus 268 GH~~~Vt~VaFSP-DG~~LATGS~DGtIkIWDl~T-gk~l~-tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg 344 (1784)
.-.+.|.+|+||| ...+|+.||.||+|++|+++. |..+- ....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3567899999999 556677999999999999976 44433 34579999999999999999999999999999999999
Q ss_pred CeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEE
Q 000251 345 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC 424 (1784)
Q Consensus 345 k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~s 424 (1784)
+ +..+..|.++|.++.|-+.... ..|++|+.|.+|++||.+....+.++.++ ..+.+
T Consensus 105 Q-~~~v~~Hd~pvkt~~wv~~~~~-~cl~TGSWDKTlKfWD~R~~~pv~t~~LP---------------------eRvYa 161 (347)
T KOG0647|consen 105 Q-VSQVAAHDAPVKTCHWVPGMNY-QCLVTGSWDKTLKFWDTRSSNPVATLQLP---------------------ERVYA 161 (347)
T ss_pred C-eeeeeecccceeEEEEecCCCc-ceeEecccccceeecccCCCCeeeeeecc---------------------ceeee
Confidence 4 5567779999999999987643 37999999999999999987776666542 23444
Q ss_pred EEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccc
Q 000251 425 CAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNS 504 (1784)
Q Consensus 425 LafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~ 504 (1784)
+..- ..+++++..+..|.+|+++.+.. .+..+..+
T Consensus 162 ~Dv~--~pm~vVata~r~i~vynL~n~~t-----------e~k~~~Sp-------------------------------- 196 (347)
T KOG0647|consen 162 ADVL--YPMAVVATAERHIAVYNLENPPT-----------EFKRIESP-------------------------------- 196 (347)
T ss_pred hhcc--CceeEEEecCCcEEEEEcCCCcc-----------hhhhhcCc--------------------------------
Confidence 4432 34677777788888888854321 11111110
Q ss_pred cccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE
Q 000251 505 WFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 584 (1784)
Q Consensus 505 ~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS 584 (1784)
..-.+.||+...|....+.
T Consensus 197 -------------------------------------------------------------Lk~Q~R~va~f~d~~~~al 215 (347)
T KOG0647|consen 197 -------------------------------------------------------------LKWQTRCVACFQDKDGFAL 215 (347)
T ss_pred -------------------------------------------------------------ccceeeEEEEEecCCceEe
Confidence 1112444554455555555
Q ss_pred EecCCeEEEEECCCC--ceEEEEecCC---------CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCc
Q 000251 585 AIMDCRICVWNAADG--SLVHSLTGHT---------ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF 653 (1784)
Q Consensus 585 gs~DGsI~VWDl~tg--klv~~L~gH~---------~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~ 653 (1784)
|+-+|.+.|..+..+ +.-.+|+.|. -.|++|+|+| -...|+|+|.||++.+||-.....+.....+..
T Consensus 216 GsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q 294 (347)
T KOG0647|consen 216 GSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ 294 (347)
T ss_pred eeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEEEecchhhhhhhccCcCCC
Confidence 555555555555544 2223333343 1377899999 556778999999999999999999999998999
Q ss_pred ceEEEEEcCCCCEEEEEe
Q 000251 654 RLVDGKFSPDGASIILSD 671 (1784)
Q Consensus 654 ~ItslafSPDGk~LAsgs 671 (1784)
+|+++.|+.+|.++|.+.
T Consensus 295 pItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 295 PITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ccceeEecCCCCEEEEEe
Confidence 999999999999999763
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=225.79 Aligned_cols=296 Identities=21% Similarity=0.345 Sum_probs=229.0
Q ss_pred EEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCC------------------CeEEEEEecCCCCeEEEEEcCCC
Q 000251 263 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET------------------AYCLASCRGHEGDITDLAVSSNN 324 (1784)
Q Consensus 263 l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~T------------------gk~l~tL~gH~~~VtsLafSpDg 324 (1784)
...+..|.+++.|.+|++||.++|||+.|..|+|.|++. --.+++|-.|...|+++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 456888999999999999999999999999999999861 13577888999999999999999
Q ss_pred CEEEEEeCCCEEEEEECCCCCee---EEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCC
Q 000251 325 ALVASASNDCIIRVWRLPDGLPI---SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 401 (1784)
Q Consensus 325 ~lLASGS~DGtIrVWDl~tgk~i---~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~ 401 (1784)
.+|++|+.|++|+++|+...... +.+ ....+|.+|.|+|.|. +|++|..-.++++||+.+-++.-.-
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe---fllvgTdHp~~rlYdv~T~Qcfvsa------ 254 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE---FLLVGTDHPTLRLYDVNTYQCFVSA------ 254 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc---eEEEecCCCceeEEeccceeEeeec------
Confidence 99999999999999998654322 223 2567899999999998 8999999999999999987653221
Q ss_pred CcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeee-cCCCC-CceEEEEc
Q 000251 402 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL-SGHEN-DVNYVQFS 479 (1784)
Q Consensus 402 ~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l-~gH~~-~V~sLafS 479 (1784)
.....|.+.|+++.+++.|++.++|+.||.|++||--+. +++..+ ..|.+ .|.+..|.
T Consensus 255 -----------nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~---------rCv~t~~~AH~gsevcSa~Ft 314 (430)
T KOG0640|consen 255 -----------NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN---------RCVRTIGNAHGGSEVCSAVFT 314 (430)
T ss_pred -----------CcccccccceeEEEecCCccEEEEeccCCcEEeeccccH---------HHHHHHHhhcCCceeeeEEEc
Confidence 123468899999999999999999999999999998553 334333 35544 68888898
Q ss_pred cCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCC
Q 000251 480 GCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 559 (1784)
Q Consensus 480 pdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~ 559 (1784)
.++ .++++.+.|..+++|.+.+++.......-. ..+..
T Consensus 315 kn~--------------------------kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg----------------~tgrq 352 (430)
T KOG0640|consen 315 KNG--------------------------KYILSSGKDSTVKLWEISTGRMLKEYTGAG----------------TTGRQ 352 (430)
T ss_pred cCC--------------------------eEEeecCCcceeeeeeecCCceEEEEecCC----------------cccch
Confidence 876 799999999999999999866432211000 00000
Q ss_pred ceeccCCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEECCCCceEEEE-ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 000251 560 RQRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 637 (1784)
Q Consensus 560 ~~~l~~h~~~VtsVafSPDG~~LaSgs-~DGsI~VWDl~tgklv~~L-~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIW 637 (1784)
.--+...|.....|++.-. ..+.++-||.+++..+..+ .||.+.+..+.-|| ..-.+++|+.|..+++|
T Consensus 353 --------~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP-~~p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 353 --------KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP-VEPAFMTCSDDFRARFW 423 (430)
T ss_pred --------hhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCC-CCCceeeecccceeeee
Confidence 0112234555555655532 3467999999998776655 48999999999999 55566799999999999
Q ss_pred eC
Q 000251 638 DI 639 (1784)
Q Consensus 638 Dl 639 (1784)
--
T Consensus 424 yr 425 (430)
T KOG0640|consen 424 YR 425 (430)
T ss_pred ee
Confidence 54
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=224.51 Aligned_cols=305 Identities=19% Similarity=0.256 Sum_probs=222.0
Q ss_pred EEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEE--EEEe--cCCCCeEEEEEcCCCCEE-EEEeCCCEEE
Q 000251 263 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL--ASCR--GHEGDITDLAVSSNNALV-ASASNDCIIR 337 (1784)
Q Consensus 263 l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l--~tL~--gH~~~VtsLafSpDg~lL-ASGS~DGtIr 337 (1784)
+.+|+||.+.|+|++|+.||++|||++.|++|+||++.+.... +.++ -.-+.-+.++|+||-+-+ ++.-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4578999999999999999999999999999999999764321 1111 112356889999998754 4445567899
Q ss_pred EEECCC---CCeeE---------EecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCccc
Q 000251 338 VWRLPD---GLPIS---------VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 405 (1784)
Q Consensus 338 VWDl~t---gk~i~---------~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~ 405 (1784)
+|.+.. |.... .-+.|.-.|..+-....+. +|++++.|..|++|++. |+.+..+..
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k---~imsas~dt~i~lw~lk-Gq~L~~idt-------- 226 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK---YIMSASLDTKICLWDLK-GQLLQSIDT-------- 226 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCce---EEEEecCCCcEEEEecC-Cceeeeecc--------
Confidence 997632 22111 1134566777777777665 99999999999999998 877776632
Q ss_pred CCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccc
Q 000251 406 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVAS 485 (1784)
Q Consensus 406 g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas 485 (1784)
....-+..+.||+|++|++++..-.|+||.+.-.+ ..+.+....+..+.||...|.+++|+++.
T Consensus 227 ------------nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k-dG~fqev~rvf~LkGH~saV~~~aFsn~S--- 290 (420)
T KOG2096|consen 227 ------------NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK-DGTFQEVKRVFSLKGHQSAVLAAAFSNSS--- 290 (420)
T ss_pred ------------ccccccceeeCCCCcEEEEecCCCCceEEEEEecc-CcchhhhhhhheeccchhheeeeeeCCCc---
Confidence 22234567899999999999998999999985332 23344556677899999999999999986
Q ss_pred cccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccC
Q 000251 486 RFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 565 (1784)
Q Consensus 486 ~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 565 (1784)
..+++.+.||+++|||..-...... ....++. .+. -+..
T Consensus 291 -----------------------~r~vtvSkDG~wriwdtdVrY~~~q-----Dpk~Lk~------------g~~-pl~a 329 (420)
T KOG2096|consen 291 -----------------------TRAVTVSKDGKWRIWDTDVRYEAGQ-----DPKILKE------------GSA-PLHA 329 (420)
T ss_pred -----------------------ceeEEEecCCcEEEeeccceEecCC-----CchHhhc------------CCc-chhh
Confidence 6999999999999999873211100 0001111 110 0111
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEe-cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000251 566 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT-GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639 (1784)
Q Consensus 566 h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~-gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 639 (1784)
.......+.++|.|+.||.+.. ..|++|..++|+..-.++ .|...|.+|+|++ ++++++++| |..+++..-
T Consensus 330 ag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 330 AGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred cCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-ceeeeeecC
Confidence 1223347899999999987654 579999999998877664 6899999999999 788988876 777888764
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=237.27 Aligned_cols=290 Identities=16% Similarity=0.280 Sum_probs=230.8
Q ss_pred EEEEEccCCCCEEEEEECCCC-CEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEE
Q 000251 262 NIKRVRGHRNAVYCAIFDRSG-RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 340 (1784)
Q Consensus 262 ~l~tL~GH~~~Vt~VaFSPDG-~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWD 340 (1784)
.+..|.||.+.|.|+|=+|.. ..+|+|+.||.|+|||+.+..++.++..|.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 356689999999999999987 7899999999999999999999999999999999999986 6788999999999999
Q ss_pred CCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCC
Q 000251 341 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 420 (1784)
Q Consensus 341 l~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~ 420 (1784)
+.- .++.++.+ .+.+..|.-+..+. .++++|.+ |.|||......+..+.. ...
T Consensus 136 ~~~-~p~~tilg-~s~~~gIdh~~~~~---~FaTcGe~--i~IWD~~R~~Pv~smsw--------------------G~D 188 (433)
T KOG0268|consen 136 IDG-PPLHTILG-KSVYLGIDHHRKNS---VFATCGEQ--IDIWDEQRDNPVSSMSW--------------------GAD 188 (433)
T ss_pred ccC-Ccceeeec-cccccccccccccc---cccccCce--eeecccccCCccceeec--------------------CCC
Confidence 754 56666653 35566776666554 78888865 99999987665555532 345
Q ss_pred ceEEEEECCCC-CEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCC
Q 000251 421 QIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 499 (1784)
Q Consensus 421 ~V~sLafSpdG-~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~ 499 (1784)
.|.++.|+|.. ..|++++.|+.|.+||++..... +.+. ..-.-+.|+|+|.+
T Consensus 189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl------~KVi----~~mRTN~IswnPea----------------- 241 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASDRSIVLYDLRQASPL------KKVI----LTMRTNTICWNPEA----------------- 241 (433)
T ss_pred ceeEEecCCCcchheeeeccCCceEEEecccCCcc------ceee----eeccccceecCccc-----------------
Confidence 58999999965 56777779999999999875431 1111 12234678999965
Q ss_pred ccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC
Q 000251 500 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 579 (1784)
Q Consensus 500 ~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG 579 (1784)
-.|++|+.|..+..+|++.. ..+.....+|...|..|.|||.|
T Consensus 242 ---------fnF~~a~ED~nlY~~DmR~l----------------------------~~p~~v~~dhvsAV~dVdfsptG 284 (433)
T KOG0268|consen 242 ---------FNFVAANEDHNLYTYDMRNL----------------------------SRPLNVHKDHVSAVMDVDFSPTG 284 (433)
T ss_pred ---------cceeeccccccceehhhhhh----------------------------cccchhhcccceeEEEeccCCCc
Confidence 58999999999999999852 23455667899999999999999
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEEe-cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000251 580 RFVLAAIMDCRICVWNAADGSLVHSLT-GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 645 (1784)
Q Consensus 580 ~~LaSgs~DGsI~VWDl~tgklv~~L~-gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l 645 (1784)
+-+++|+.|.+|+||.+..+...-.+. ..-..|.|+.||. +.+++++|+.|+.|++|.....+.+
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeeeecchhhhc
Confidence 999999999999999998775443321 1123589999999 8899999999999999987654443
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=223.69 Aligned_cols=248 Identities=18% Similarity=0.287 Sum_probs=205.9
Q ss_pred cceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC--EEEEEeCCCEE
Q 000251 259 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA--LVASASNDCII 336 (1784)
Q Consensus 259 ~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~--lLASGS~DGtI 336 (1784)
++.++..+..|.+.|+|||.+ |.++|+||.|-+|+|||+.+...+..+-.|.+.|+++.|.++-. .|++|+.||.|
T Consensus 32 ~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 32 TLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred eeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence 455677889999999999996 88999999999999999999999999999999999999998776 89999999999
Q ss_pred EEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCC
Q 000251 337 RVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 416 (1784)
Q Consensus 337 rVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~ 416 (1784)
.+|+.....++..+++|.+.|+.|+++|.++ +.++.+.|+.+++||+-.|+......+
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K---LALsVg~D~~lr~WNLV~Gr~a~v~~L------------------- 167 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGK---LALSVGGDQVLRTWNLVRGRVAFVLNL------------------- 167 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEecCCCc---eEEEEcCCceeeeehhhcCccceeecc-------------------
Confidence 9999999999999999999999999999997 888999999999999998876554432
Q ss_pred CCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCC
Q 000251 417 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 496 (1784)
Q Consensus 417 ~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~ 496 (1784)
....+.+.|+|.|.+|++++.++ |-||.+.+... +..+ .....+.++.|..
T Consensus 168 --~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v---------~~~i-~~~~r~l~~~~l~---------------- 218 (362)
T KOG0294|consen 168 --KNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASV---------FREI-ENPKRILCATFLD---------------- 218 (362)
T ss_pred --CCcceeeEEcCCCCEEEEEeccE-EEEEecccHhH---------hhhh-hccccceeeeecC----------------
Confidence 22234589999999999888765 88998864321 1111 1123355555543
Q ss_pred CCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEE-
Q 000251 497 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW- 575 (1784)
Q Consensus 497 ~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf- 575 (1784)
...|++|+.|+.|.+||..+ ..+...+.+|...|-.+.+
T Consensus 219 -----------~~~L~vG~d~~~i~~~D~ds-----------------------------~~~~~~~~AH~~RVK~i~~~ 258 (362)
T KOG0294|consen 219 -----------GSELLVGGDNEWISLKDTDS-----------------------------DTPLTEFLAHENRVKDIASY 258 (362)
T ss_pred -----------CceEEEecCCceEEEeccCC-----------------------------CccceeeecchhheeeeEEE
Confidence 35899999999999999874 3345567789999998874
Q ss_pred -cCCCCEEEEEecCCeEEEEECCCC
Q 000251 576 -SLDNRFVLAAIMDCRICVWNAADG 599 (1784)
Q Consensus 576 -SPDG~~LaSgs~DGsI~VWDl~tg 599 (1784)
.|++.+|++++.||.|+|||+...
T Consensus 259 ~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 259 TNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ecCCceEEEEeccCceEEEEEcccc
Confidence 578899999999999999999765
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=243.38 Aligned_cols=279 Identities=19% Similarity=0.269 Sum_probs=234.8
Q ss_pred EEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCccccee
Q 000251 316 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 395 (1784)
Q Consensus 316 tsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i 395 (1784)
.-+.|+. .+.||+|. ...|.+|+..++........+...|+++.|+++|. +|++|..+|.|.|||....+.+..+
T Consensus 181 nlldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~---~LavG~~~g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 181 NLLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGS---HLAVGTSDGTVQIWDVKEQKKTRTL 255 (484)
T ss_pred hHhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCC---EEEEeecCCeEEEEehhhccccccc
Confidence 3467873 44677765 44799999999987666666689999999999998 9999999999999999877655554
Q ss_pred ecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceE
Q 000251 396 YIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNY 475 (1784)
Q Consensus 396 ~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~s 475 (1784)
. ..|...|-+++|. +..+.+|+.++.|.++|++.... .+..+.+|...|..
T Consensus 256 ~-------------------~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~--------~~~~~~~H~qeVCg 306 (484)
T KOG0305|consen 256 R-------------------GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH--------VVSTLQGHRQEVCG 306 (484)
T ss_pred c-------------------CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh--------hhhhhhcccceeee
Confidence 2 1278889999998 67899999999999999986432 22248899999999
Q ss_pred EEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCC
Q 000251 476 VQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 555 (1784)
Q Consensus 476 LafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~ 555 (1784)
+.|++++ .++++|+.|+.+.|||...
T Consensus 307 Lkws~d~--------------------------~~lASGgnDN~~~Iwd~~~---------------------------- 332 (484)
T KOG0305|consen 307 LKWSPDG--------------------------NQLASGGNDNVVFIWDGLS---------------------------- 332 (484)
T ss_pred eEECCCC--------------------------CeeccCCCccceEeccCCC----------------------------
Confidence 9999997 7999999999999999853
Q ss_pred CCCCceeccCCCCCeeEEEEcCC-CCEEEEE--ecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEe-CC
Q 000251 556 RGGPRQRILPTPRGVNMIVWSLD-NRFVLAA--IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG-YD 631 (1784)
Q Consensus 556 ~~~~~~~l~~h~~~VtsVafSPD-G~~LaSg--s~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs-~D 631 (1784)
..+...+..|...|.+++|+|- ...||+| +.|+.|++||..+|+.+..+.. ...|..|.|++....++.+-| .+
T Consensus 333 -~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~ 410 (484)
T KOG0305|consen 333 -PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSE 410 (484)
T ss_pred -ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCC
Confidence 3456778889999999999995 4567774 5799999999999999998874 456999999996666666544 56
Q ss_pred CcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000251 632 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 684 (1784)
Q Consensus 632 G~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sG 684 (1784)
+.|.||+..+.+++..+.+|...|..+++||||..|++|+.|.++++|++-..
T Consensus 411 n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 411 NQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 78999999999999999999999999999999999999999999999998653
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=237.58 Aligned_cols=281 Identities=19% Similarity=0.258 Sum_probs=232.6
Q ss_pred CCCEEEEEECCCCC--EEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCee
Q 000251 270 RNAVYCAIFDRSGR--YVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 347 (1784)
Q Consensus 270 ~~~Vt~VaFSPDG~--~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i 347 (1784)
.+.|.+++|+|... +.+|+| -.|.||+..+...++++......|.++.|-.||++||+|...|.|+|+|+.+...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 36799999999543 344444 47999999998888888888899999999999999999999999999998776678
Q ss_pred EEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEE
Q 000251 348 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 427 (1784)
Q Consensus 348 ~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLaf 427 (1784)
+.+.+|+.+|..+.|+|.++ ..|++|+.|+.+++||+.+... .+. ..+|...|.|.+|
T Consensus 104 R~~~ah~apv~~~~f~~~d~--t~l~s~sDd~v~k~~d~s~a~v--~~~------------------l~~htDYVR~g~~ 161 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDN--TMLVSGSDDKVVKYWDLSTAYV--QAE------------------LSGHTDYVRCGDI 161 (487)
T ss_pred HHHhhccCceeEEEecccCC--eEEEecCCCceEEEEEcCCcEE--EEE------------------ecCCcceeEeecc
Confidence 88999999999999999876 4889999999999999998763 221 2468999999999
Q ss_pred CCC-CCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccc
Q 000251 428 NAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWF 506 (1784)
Q Consensus 428 Spd-G~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~ 506 (1784)
+|. +..+++|+.||.|++||++... ....-..|..+|..+.+-|.|
T Consensus 162 ~~~~~hivvtGsYDg~vrl~DtR~~~---------~~v~elnhg~pVe~vl~lpsg------------------------ 208 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDGKVRLWDTRSLT---------SRVVELNHGCPVESVLALPSG------------------------ 208 (487)
T ss_pred ccCCCeEEEecCCCceEEEEEeccCC---------ceeEEecCCCceeeEEEcCCC------------------------
Confidence 994 5689999999999999997631 122334688999999999986
Q ss_pred cCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe
Q 000251 507 CHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI 586 (1784)
Q Consensus 507 ~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs 586 (1784)
..|++++ ...|+|||+.++. ........|...|+|+++..+++.|++|+
T Consensus 209 --s~iasAg-Gn~vkVWDl~~G~----------------------------qll~~~~~H~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 209 --SLIASAG-GNSVKVWDLTTGG----------------------------QLLTSMFNHNKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred --CEEEEcC-CCeEEEEEecCCc----------------------------eehhhhhcccceEEEEEeecCCceEeecc
Confidence 4666655 4589999998533 22233344888999999999999999999
Q ss_pred cCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000251 587 MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 640 (1784)
Q Consensus 587 ~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 640 (1784)
-|+.|+|||+.+.+.++.+. -.++|.+++.+| ++..++.|..+|.+.+-+..
T Consensus 258 LD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~-dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 258 LDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSP-DDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred cccceEEEEccceEEEEeee-cccceeeEEecC-CCceEEEecccceeeeehhh
Confidence 99999999999999999887 567899999999 67778889999988777443
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=255.13 Aligned_cols=288 Identities=18% Similarity=0.289 Sum_probs=227.4
Q ss_pred CCCCEEEEEECCCCCEEEEEc--CCcEEEEEECCC------------CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 000251 269 HRNAVYCAIFDRSGRYVITGS--DDRLVKIWSMET------------AYCLASCRGHEGDITDLAVSSNNALVASASNDC 334 (1784)
Q Consensus 269 H~~~Vt~VaFSPDG~~LATGS--~DGtIkIWDl~T------------gk~l~tL~gH~~~VtsLafSpDg~lLASGS~DG 334 (1784)
+...|.++..+|||..+|||+ .||.++||+.+. .+.+.+...|.+.|.|+.|+|||++||+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 455699999999999999999 899999998642 244567778999999999999999999999999
Q ss_pred EEEEEECCC------------------CCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceee
Q 000251 335 IIRVWRLPD------------------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY 396 (1784)
Q Consensus 335 tIrVWDl~t------------------gk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~ 396 (1784)
.|.||.... .+.+..+.+|.+.|..++|+|++. +|++++.|++|.+|+..+...+..+
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~---~lvS~s~DnsViiwn~~tF~~~~vl- 167 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS---LLVSVSLDNSVIIWNAKTFELLKVL- 167 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc---EEEEecccceEEEEccccceeeeee-
Confidence 999998762 136778899999999999999987 9999999999999999988665554
Q ss_pred cCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecC------CC
Q 000251 397 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG------HE 470 (1784)
Q Consensus 397 l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~g------H~ 470 (1784)
.+|...|..+.|.|-|++||+-+.|++|+||.+.+-. ....+.. -.
T Consensus 168 -------------------~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~---------i~k~It~pf~~~~~~ 219 (942)
T KOG0973|consen 168 -------------------RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG---------IEKSITKPFEESPLT 219 (942)
T ss_pred -------------------ecccccccceEECCccCeeeeecCCceEEEEEcccce---------eeEeeccchhhCCCc
Confidence 4688899999999999999999999999999975421 1222222 23
Q ss_pred CCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeC----CCcEEEEeCCCCCCCcccccccccccccCC
Q 000251 471 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR----DGSAIIWIPRSRRSHPKAARWTQAYHLKVP 546 (1784)
Q Consensus 471 ~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~----DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~ 546 (1784)
..+.-+.|+|+| .+|++.-. -.++.|.+-.+ |
T Consensus 220 T~f~RlSWSPDG--------------------------~~las~nA~n~~~~~~~IieR~t---------W--------- 255 (942)
T KOG0973|consen 220 TFFLRLSWSPDG--------------------------HHLASPNAVNGGKSTIAIIERGT---------W--------- 255 (942)
T ss_pred ceeeecccCCCc--------------------------CeecchhhccCCcceeEEEecCC---------c---------
Confidence 456778899998 56655422 23444543321 2
Q ss_pred CCCCCCCCCCCCCceeccCCCCCeeEEEEcCC-------------CC----EEEEEecCCeEEEEECCCCceEEEEe-cC
Q 000251 547 PPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD-------------NR----FVLAAIMDCRICVWNAADGSLVHSLT-GH 608 (1784)
Q Consensus 547 ~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD-------------G~----~LaSgs~DGsI~VWDl~tgklv~~L~-gH 608 (1784)
.....+.+|..++.++.|+|. +. .+|+|+.|++|-||.....+++.... -.
T Consensus 256 -----------k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf 324 (942)
T KOG0973|consen 256 -----------KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF 324 (942)
T ss_pred -----------eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh
Confidence 223456789999999999981 11 57889999999999998887766543 23
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 000251 609 TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 644 (1784)
Q Consensus 609 ~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~ 644 (1784)
...|..++|+| ++..|+.++.||+|.+..++..+.
T Consensus 325 ~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 325 NKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred cCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHh
Confidence 55799999999 777788899999999999876543
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-23 Score=238.93 Aligned_cols=286 Identities=18% Similarity=0.343 Sum_probs=236.9
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCC--eeEEecCCCCceEEEEecCCCCccEEEEEEeCCCc
Q 000251 303 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 380 (1784)
Q Consensus 303 k~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk--~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGt 380 (1784)
.....+..|.+.|..+.|-++...|++|+.|..|++|++..++ .+.+|.|..+.|+.+.|.+++. ++++++.|+.
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~---~~iAas~d~~ 242 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNK---HVIAASNDKN 242 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCc---eEEeecCCCc
Confidence 3445567899999999999998999999999999999987665 6788888999999999999987 8999999999
Q ss_pred EEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCC
Q 000251 381 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 460 (1784)
Q Consensus 381 IrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~ 460 (1784)
+++|++...+...++ .+|...|+++.|......+++|+.|.+|++||+.+..+.
T Consensus 243 ~r~Wnvd~~r~~~TL--------------------sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~------ 296 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHTL--------------------SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCS------ 296 (459)
T ss_pred eeeeeccchhhhhhh--------------------cccccceeeehhhccccceeeccccchhhhhhhhhhhee------
Confidence 999999988766554 459999999999987777999999999999999653321
Q ss_pred cceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccccccccc
Q 000251 461 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 540 (1784)
Q Consensus 461 ~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~ 540 (1784)
..+ -....+..|..++ ..+++|-.|+.|++||.++..
T Consensus 297 ---kt~-l~~S~cnDI~~~~----------------------------~~~~SgH~DkkvRfwD~Rs~~----------- 333 (459)
T KOG0288|consen 297 ---KTV-LPGSQCNDIVCSI----------------------------SDVISGHFDKKVRFWDIRSAD----------- 333 (459)
T ss_pred ---ccc-cccccccceEecc----------------------------eeeeecccccceEEEeccCCc-----------
Confidence 111 1122344444431 368899999999999988632
Q ss_pred ccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecC----CCCeEEEE
Q 000251 541 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH----TESTYVLD 616 (1784)
Q Consensus 541 ~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH----~~~VtsLa 616 (1784)
+ ....+..+.|+++..+++|..|.+++.|.++.+.|+.+.+..+.+... ....+.+.
T Consensus 334 ------------------~-~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 334 ------------------K-TRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred ------------------e-eeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 1 122233458999999999999999999999999999999988887642 23478999
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcc--eEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000251 617 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR--LVDGKFSPDGASIILSDDVGQLYILN 680 (1784)
Q Consensus 617 fSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~--ItslafSPDGk~LAsgs~DG~I~IWd 680 (1784)
||| ++.|+++||.||.|+||++.+|++...+...... |++++|+|-|..|++++.++.+.+|.
T Consensus 395 fSp-d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 395 FSP-DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ECC-CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999 8899999999999999999999999998866554 99999999999999999999999993
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.1e-21 Score=223.71 Aligned_cols=295 Identities=16% Similarity=0.181 Sum_probs=211.9
Q ss_pred CCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE-EEEeCCCEEEEEECCCCCeeEEecCCCCceEEE
Q 000251 282 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV-ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAI 360 (1784)
Q Consensus 282 G~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lL-ASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsL 360 (1784)
+..+++++.|+.|++||+.+++.+..+..+. .+.+++|+|+++.| ++++.++.|++||+.+++.+..+..+.. +..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 3578899999999999999999999988654 46789999999976 5667889999999999988877765544 5678
Q ss_pred EecCCCCccEEE-EEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeC
Q 000251 361 AFSPRPGSVYQL-LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS 439 (1784)
Q Consensus 361 afSPdg~~~~~L-aSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~ 439 (1784)
+|+|+++ .| ++++.++.|.+||+.++..+..+. ....+.+++|+|+|.+++++..
T Consensus 79 ~~~~~g~---~l~~~~~~~~~l~~~d~~~~~~~~~~~---------------------~~~~~~~~~~~~dg~~l~~~~~ 134 (300)
T TIGR03866 79 ALHPNGK---ILYIANEDDNLVTVIDIETRKVLAEIP---------------------VGVEPEGMAVSPDGKIVVNTSE 134 (300)
T ss_pred EECCCCC---EEEEEcCCCCeEEEEECCCCeEEeEee---------------------CCCCcceEEECCCCCEEEEEec
Confidence 9999986 45 455678999999998866444331 1223578999999999999887
Q ss_pred Cc-eEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeE-EEEeCC
Q 000251 440 DT-LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI-VTCSRD 517 (1784)
Q Consensus 440 DG-~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~L-VSgS~D 517 (1784)
++ .+.+||..++. .+..+. ....+..++|++++ ..| +++..+
T Consensus 135 ~~~~~~~~d~~~~~---------~~~~~~-~~~~~~~~~~s~dg--------------------------~~l~~~~~~~ 178 (300)
T TIGR03866 135 TTNMAHFIDTKTYE---------IVDNVL-VDQRPRFAEFTADG--------------------------KELWVSSEIG 178 (300)
T ss_pred CCCeEEEEeCCCCe---------EEEEEE-cCCCccEEEECCCC--------------------------CEEEEEcCCC
Confidence 65 56778885432 222221 22345678899886 455 455679
Q ss_pred CcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE-EecCCeEEEEEC
Q 000251 518 GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA-AIMDCRICVWNA 596 (1784)
Q Consensus 518 GtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS-gs~DGsI~VWDl 596 (1784)
+.|.+||+.+++..... ..... . ..........++|+|+|+++++ .+.++.|.+||+
T Consensus 179 ~~v~i~d~~~~~~~~~~-------~~~~~----------~-----~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKI-------TFEIP----------G-----VHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred CEEEEEEcCcceeeeee-------eeccc----------c-----cccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence 99999999874421110 00000 0 0000112346889999998655 345678999999
Q ss_pred CCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcC
Q 000251 597 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSP 662 (1784)
Q Consensus 597 ~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSP 662 (1784)
.+++.+..+. +...+.+++|+|++..++++++.+|.|+|||+.+++++..+..+ ...+.++|+|
T Consensus 237 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 237 KTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 9998877654 34578999999955444444467999999999999999999854 5568888875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-22 Score=238.60 Aligned_cols=282 Identities=19% Similarity=0.295 Sum_probs=237.4
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCee--EEecCCCCceEE-EEecCCCCccEEEEEEeCCC
Q 000251 303 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI--SVLRGHTAAVTA-IAFSPRPGSVYQLLSSSDDG 379 (1784)
Q Consensus 303 k~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i--~~L~gH~~~Vts-LafSPdg~~~~~LaSgs~DG 379 (1784)
++-+.+.+|...|..+++.+.. .++++|.||++++|+-..++.+ ..+.+|.+.|.+ +++.+..+ -.|++|+.|+
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~--~~l~~g~~D~ 81 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDK--GRLVVGGMDT 81 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccC--cceEeecccc
Confidence 4567889999999999987544 8999999999999997555433 456778888877 88876322 2699999999
Q ss_pred cEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCC
Q 000251 380 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQP 459 (1784)
Q Consensus 380 tIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~ 459 (1784)
+|.+|.+.+...... +.+|...|.|++...++. +++|+-|.+++||-.
T Consensus 82 ~i~v~~~~~~~P~~~--------------------LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~----------- 129 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYT--------------------LKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI----------- 129 (745)
T ss_pred eEEEEecCCCCchhh--------------------hhccccceeeeecCCcCc-eEecccccceEEecc-----------
Confidence 999999877654443 457999999999888887 999999999999987
Q ss_pred CcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccc
Q 000251 460 NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQ 539 (1784)
Q Consensus 460 ~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~ 539 (1784)
+.....+.+|+..|+++++.|. +.++||+.|.+|++|.-.
T Consensus 130 ~~l~~~l~gH~asVWAv~~l~e---------------------------~~~vTgsaDKtIklWk~~------------- 169 (745)
T KOG0301|consen 130 GELVYSLQGHTASVWAVASLPE---------------------------NTYVTGSADKTIKLWKGG------------- 169 (745)
T ss_pred hhhhcccCCcchheeeeeecCC---------------------------CcEEeccCcceeeeccCC-------------
Confidence 3456669999999999999886 389999999999999543
Q ss_pred cccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEec
Q 000251 540 AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 619 (1784)
Q Consensus 540 ~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSP 619 (1784)
.....+.+|...|+.+++-+++ .+++++.||.|++|++ +|+++..+.||+.-|+++...+
T Consensus 170 ------------------~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~ 229 (745)
T KOG0301|consen 170 ------------------TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL 229 (745)
T ss_pred ------------------chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC
Confidence 3456678899999999998775 5778899999999999 8999999999999999999666
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000251 620 FNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 683 (1784)
Q Consensus 620 dd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~s 683 (1784)
+..+++|+|.|++++||+.. .+.+.+......|+++++-++|. |++|+.||.|+||....
T Consensus 230 -~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 230 -SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred -CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 66788999999999999985 88888886666899999999887 67788889999999764
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-22 Score=234.90 Aligned_cols=310 Identities=17% Similarity=0.208 Sum_probs=233.3
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCC----CeeEEe-cCCCCceEEEEecCCCCccEEEEEEe
Q 000251 302 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG----LPISVL-RGHTAAVTAIAFSPRPGSVYQLLSSS 376 (1784)
Q Consensus 302 gk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg----k~i~~L-~gH~~~VtsLafSPdg~~~~~LaSgs 376 (1784)
+.....+.+|+..|.++++.|.|..|++|+.|-+|++||+... +..+.+ ......|.+++|++.+. .|++.+
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~---~iLvvs 233 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD---QILVVS 233 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC---eEEEEe
Confidence 4445567889999999999999999999999999999998643 112222 23556899999999987 777777
Q ss_pred CCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCC-CEEEEeeCCceEEEEcCCCCCCCC
Q 000251 377 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDD 455 (1784)
Q Consensus 377 ~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG-~~LasGs~DG~IrVWDl~tg~~~~ 455 (1784)
.....+|+|-.......... ..+ -..-.....+|...++|.+|+|.. ..|++++.||+++||++...+..
T Consensus 234 g~aqakl~DRdG~~~~e~~K---GDQ-----YI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q- 304 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSK---GDQ-----YIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ- 304 (641)
T ss_pred cCcceeEEccCCceeeeeec---cch-----hhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh-
Confidence 78889999976544332221 000 011123456899999999999965 67899999999999999754311
Q ss_pred CCCCCcce--eeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcc
Q 000251 456 SDQPNHEI--DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPK 533 (1784)
Q Consensus 456 s~~~~~~i--~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~ 533 (1784)
...+ ....+..-.++.++|++++ ..|++|..||.|.+|+..+.....
T Consensus 305 ----~qVik~k~~~g~Rv~~tsC~~nrdg--------------------------~~iAagc~DGSIQ~W~~~~~~v~p- 353 (641)
T KOG0772|consen 305 ----LQVIKTKPAGGKRVPVTSCAWNRDG--------------------------KLIAAGCLDGSIQIWDKGSRTVRP- 353 (641)
T ss_pred ----eeEEeeccCCCcccCceeeecCCCc--------------------------chhhhcccCCceeeeecCCccccc-
Confidence 1111 1122445578899999987 689999999999999986422110
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeccCCCC--CeeEEEEcCCCCEEEEEecCCeEEEEECCCC-ceEEEEecCC-
Q 000251 534 AARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR--GVNMIVWSLDNRFVLAAIMDCRICVWNAADG-SLVHSLTGHT- 609 (1784)
Q Consensus 534 ~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~--~VtsVafSPDG~~LaSgs~DGsI~VWDl~tg-klv~~L~gH~- 609 (1784)
....-..|.. .|+||+||+||++|++-+.|++++|||++.. +++.+..+-.
T Consensus 354 -------------------------~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t 408 (641)
T KOG0772|consen 354 -------------------------VMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT 408 (641)
T ss_pred -------------------------ceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCc
Confidence 1111233444 7999999999999999999999999999874 4555554432
Q ss_pred -CCeEEEEEecCCCcEEEEEe------CCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000251 610 -ESTYVLDVHPFNPRIAMSAG------YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 680 (1784)
Q Consensus 610 -~~VtsLafSPdd~~lLaSgs------~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWd 680 (1784)
-.-+.++||| +.++|++|. ..|++.+||..+-..+..+......|..+.|+|-=+.|++|+.||.++||=
T Consensus 409 ~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 409 PFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred cCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 2356789999 677888875 357899999999999999888888899999999999999999999999874
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-22 Score=241.50 Aligned_cols=283 Identities=17% Similarity=0.274 Sum_probs=232.3
Q ss_pred CCCCEEEEEeCCCEEEEEECCCCC------eeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCccccee
Q 000251 322 SNNALVASASNDCIIRVWRLPDGL------PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 395 (1784)
Q Consensus 322 pDg~lLASGS~DGtIrVWDl~tgk------~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i 395 (1784)
|.+++|++|+.||.|++|++.... .+..+..|..+|..++...+++ .|++++.|-+|++|+...+..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~---tlIS~SsDtTVK~W~~~~~~~---- 107 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK---TLISASSDTTVKVWNAHKDNT---- 107 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC---ceEEecCCceEEEeecccCcc----
Confidence 467789999999999999985432 3778889999999999999987 899999999999999876630
Q ss_pred ecCCCCCcccCCCCCCCCCCCCCCCceEEEEE-CCCCCEEEEeeCCceEEEEcCCCCCC--CCCCCCCcceeeec-CCCC
Q 000251 396 YIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF-NANGTVFVTGSSDTLARVWNACKPNT--DDSDQPNHEIDVLS-GHEN 471 (1784)
Q Consensus 396 ~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLaf-SpdG~~LasGs~DG~IrVWDl~tg~~--~~s~~~~~~i~~l~-gH~~ 471 (1784)
......+.|...|.|+++ -++..++|+||-|+.|.|||+.++.. ....... ....+. |+..
T Consensus 108 --------------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~-t~~sl~sG~k~ 172 (735)
T KOG0308|consen 108 --------------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV-TVNSLGSGPKD 172 (735)
T ss_pred --------------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc-ccccCCCCCcc
Confidence 112234568999999999 77888999999999999999987632 1111211 122233 8889
Q ss_pred CceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCC
Q 000251 472 DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMP 551 (1784)
Q Consensus 472 ~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~ 551 (1784)
.|.+++-++.+ ..|++|+..+.+++||.++.+
T Consensus 173 siYSLA~N~t~--------------------------t~ivsGgtek~lr~wDprt~~---------------------- 204 (735)
T KOG0308|consen 173 SIYSLAMNQTG--------------------------TIIVSGGTEKDLRLWDPRTCK---------------------- 204 (735)
T ss_pred ceeeeecCCcc--------------------------eEEEecCcccceEEecccccc----------------------
Confidence 99999998876 589999999999999999733
Q ss_pred CCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCC
Q 000251 552 PQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD 631 (1784)
Q Consensus 552 ~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~D 631 (1784)
.+..+.+|...|..+..+.||+.+++++.||+|++||+...++++++..|...|+++..+| +=..+++|+.|
T Consensus 205 -------kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd 276 (735)
T KOG0308|consen 205 -------KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRD 276 (735)
T ss_pred -------ceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCC
Confidence 4456679999999999999999999999999999999999999999999999999999998 66788999999
Q ss_pred CcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000251 632 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 682 (1784)
Q Consensus 632 G~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~ 682 (1784)
|.|..=|+.+......+.....+|..+..+....-+-+++.|+.|.-|...
T Consensus 277 ~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 277 GNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred CcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 999999998854443444466788888887666666777888999999864
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-21 Score=206.53 Aligned_cols=300 Identities=22% Similarity=0.357 Sum_probs=234.5
Q ss_pred cccccccccccCCccccccCCcchhhhcccccc-ccc-----ccccceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcE
Q 000251 220 DQVRGLGLREIGGGFTRHHRAPSIRAACYAIAK-PST-----MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRL 293 (1784)
Q Consensus 220 ~~V~~l~~r~~Gg~~~~~~~~~~l~s~~~~~~~-~~~-----~~~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGt 293 (1784)
..|+.+.|-+.|+.++...+...++...|...+ +.. .....-..++-+.|.+.|+|++|||+|.+||||+.|.+
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence 457788899999888887777776666563222 211 11223344666789999999999999999999999999
Q ss_pred EEEEECCCCeEE-----EEEecCCCCeEEEEEcCC----CCEEEEEeC-CCEEEEEECCCCCeeEEecCCCCceEEEE-e
Q 000251 294 VKIWSMETAYCL-----ASCRGHEGDITDLAVSSN----NALVASASN-DCIIRVWRLPDGLPISVLRGHTAAVTAIA-F 362 (1784)
Q Consensus 294 IkIWDl~Tgk~l-----~tL~gH~~~VtsLafSpD----g~lLASGS~-DGtIrVWDl~tgk~i~~L~gH~~~VtsLa-f 362 (1784)
|++.-.....+. ..+.-|.+.|.+++|-.+ +.+|++++. |..|.+-|..+|+....+.+|++-|.++- |
T Consensus 113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalysw 192 (350)
T KOG0641|consen 113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSW 192 (350)
T ss_pred EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEe
Confidence 999765433322 346679999999999753 557887754 78888999999999999999999998874 4
Q ss_pred cCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCce
Q 000251 363 SPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 442 (1784)
Q Consensus 363 SPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~ 442 (1784)
+. - .+++|+.|.+|++||++-..++.++...... ..-....|.+++..|.|++|++|..|..
T Consensus 193 n~--~---m~~sgsqdktirfwdlrv~~~v~~l~~~~~~-------------~glessavaav~vdpsgrll~sg~~dss 254 (350)
T KOG0641|consen 193 NG--A---MFASGSQDKTIRFWDLRVNSCVNTLDNDFHD-------------GGLESSAVAAVAVDPSGRLLASGHADSS 254 (350)
T ss_pred cC--c---EEEccCCCceEEEEeeeccceeeeccCcccC-------------CCcccceeEEEEECCCcceeeeccCCCc
Confidence 32 2 8999999999999999987776665321111 1123467999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEE
Q 000251 443 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAII 522 (1784)
Q Consensus 443 IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrI 522 (1784)
..+||++. +..++.+..|...|.++.|+|.. .++++|+.|..|++
T Consensus 255 c~lydirg---------~r~iq~f~phsadir~vrfsp~a--------------------------~yllt~syd~~ikl 299 (350)
T KOG0641|consen 255 CMLYDIRG---------GRMIQRFHPHSADIRCVRFSPGA--------------------------HYLLTCSYDMKIKL 299 (350)
T ss_pred eEEEEeeC---------CceeeeeCCCccceeEEEeCCCc--------------------------eEEEEecccceEEE
Confidence 99999975 56788899999999999999976 69999999999999
Q ss_pred EeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECC
Q 000251 523 WIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAA 597 (1784)
Q Consensus 523 WDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~ 597 (1784)
-|+...- ...-++..+..|...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 300 tdlqgdl-------------------------a~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 300 TDLQGDL-------------------------AHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eecccch-------------------------hhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 9887411 0122344556788888999999999999999999999999763
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-22 Score=221.77 Aligned_cols=324 Identities=20% Similarity=0.278 Sum_probs=252.3
Q ss_pred EEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecC
Q 000251 285 VITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 364 (1784)
Q Consensus 285 LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSP 364 (1784)
|++.-.+++++ .++++.+.||...|+.++.......+.+++.|.+.+||.+++|+++..+.||.+.|++|+|++
T Consensus 127 ivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~ 200 (481)
T KOG0300|consen 127 IVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN 200 (481)
T ss_pred heeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecc
Confidence 44444556533 345677889999999999987777999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCC--------------C-----cccC-CCCCCCCCCCCCCCceEE
Q 000251 365 RPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS--------------D-----AVAG-RNMAPSSSAGPQSHQIFC 424 (1784)
Q Consensus 365 dg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~--------------~-----~~~g-~~~~~~~s~~~h~~~V~s 424 (1784)
.+. ++++++.|++-.||...-.-.++.-..+... . ...+ ....+...+.+|...|.+
T Consensus 201 s~~---L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 201 SGL---LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred ccc---eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 886 8999999999999974211111110000000 0 0000 111233445678899999
Q ss_pred EEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccc
Q 000251 425 CAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNS 504 (1784)
Q Consensus 425 LafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~ 504 (1784)
+.|...|+.+++++-|.+..+||+.+ +..+..+.||....+.++-.|..
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEt---------ge~v~~LtGHd~ELtHcstHptQ---------------------- 326 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVET---------GEVVNILTGHDSELTHCSTHPTQ---------------------- 326 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeecc---------CceeccccCcchhccccccCCcc----------------------
Confidence 99999999999999999999999987 45678899999999998888864
Q ss_pred cccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE
Q 000251 505 WFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 584 (1784)
Q Consensus 505 ~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS 584 (1784)
.++++.+.|.+.++||++. .......+.+|...|+++.|..+. .+++
T Consensus 327 ----rLVvTsSrDtTFRLWDFRe----------------------------aI~sV~VFQGHtdtVTS~vF~~dd-~vVS 373 (481)
T KOG0300|consen 327 ----RLVVTSSRDTTFRLWDFRE----------------------------AIQSVAVFQGHTDTVTSVVFNTDD-RVVS 373 (481)
T ss_pred ----eEEEEeccCceeEeccchh----------------------------hcceeeeecccccceeEEEEecCC-ceee
Confidence 6888999999999999983 123345678899999999998765 5889
Q ss_pred EecCCeEEEEECCCCc-eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-----ccCcceEEE
Q 000251 585 AIMDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE-----ISRFRLVDG 658 (1784)
Q Consensus 585 gs~DGsI~VWDl~tgk-lv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~-----~~~~~Itsl 658 (1784)
|+.|.+|+|||+.+.. ++.++.. ..+++.++.+. +..+++.--.+..|+|||+ +|..+..+. +|..-|+|+
T Consensus 374 gSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~-g~~iIAiPhDNRqvRlfDl-nG~RlaRlPrtsRqgHrRMV~c~ 450 (481)
T KOG0300|consen 374 GSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSK-GHPIIAIPHDNRQVRLFDL-NGNRLARLPRTSRQGHRRMVTCC 450 (481)
T ss_pred cCCCceEEEeeeccccCcceeeec-CCccceeEeec-CCceEEeccCCceEEEEec-CCCccccCCcccccccceeeeee
Confidence 9999999999998854 5666663 56688999988 7778888778889999999 565554443 566678999
Q ss_pred EEcCCC--CEEEEEeCCCeEEEEECCCC
Q 000251 659 KFSPDG--ASIILSDDVGQLYILNTGQG 684 (1784)
Q Consensus 659 afSPDG--k~LAsgs~DG~I~IWdl~sG 684 (1784)
+|..+- .-|++++.|..+.-|.+...
T Consensus 451 AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 451 AWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eccccCcccccccccccceeeeeEeccc
Confidence 998764 45788999999999998653
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=227.06 Aligned_cols=399 Identities=12% Similarity=0.153 Sum_probs=274.8
Q ss_pred cchhhhcccccccccccccceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEE--EecCCCCeEEE
Q 000251 241 PSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS--CRGHEGDITDL 318 (1784)
Q Consensus 241 ~~l~s~~~~~~~~~~~~~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~t--L~gH~~~VtsL 318 (1784)
..|++++..+.+..|++.+++++..+..-.++|++++.+|.+..++.|++||.+...+...+..... |.-..+.|.++
T Consensus 81 ~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsl 160 (691)
T KOG2048|consen 81 GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSL 160 (691)
T ss_pred CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEE
Confidence 3577778888899999999999999999999999999999999999999999888899888877654 33456899999
Q ss_pred EEcCCCCEEEEEeCCCEEEEEECCCCCeeEEe-------c-CCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCc
Q 000251 319 AVSSNNALVASASNDCIIRVWRLPDGLPISVL-------R-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 390 (1784)
Q Consensus 319 afSpDg~lLASGS~DGtIrVWDl~tgk~i~~L-------~-gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~ 390 (1784)
+|+|++..||+|+.||.|++||+.++..+... . +...-|+++.|..++ .|++|..-|+|.+||...+.
T Consensus 161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~----tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS----TIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC----cEEEecCCceEEEEcccCcc
Confidence 99999999999999999999999999776621 1 234568999999876 79999999999999999988
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCC
Q 000251 391 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 470 (1784)
Q Consensus 391 ~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~ 470 (1784)
+++.+. .|...|.|++..+++..+++++.|+.|..|...+... .+........|.
T Consensus 237 LiqS~~--------------------~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~-----~wv~~~~r~~h~ 291 (691)
T KOG2048|consen 237 LIQSHS--------------------CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS-----EWVINSRRDLHA 291 (691)
T ss_pred hhhhhh--------------------hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc-----ceeeeccccCCc
Confidence 776653 4788899999999999999999999999998865432 133344567889
Q ss_pred CCceEEEEccCccccccc-----ccCCCCC-CCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccccccccccccc
Q 000251 471 NDVNYVQFSGCAVASRFS-----LADSSKE-DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 544 (1784)
Q Consensus 471 ~~V~sLafSpdglas~~~-----~~~s~~~-~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~ 544 (1784)
..|.+++..++.+.+... ....... .........+.....++++..+..+.+|...... .|.. .
T Consensus 292 hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~------lwrl----G 361 (691)
T KOG2048|consen 292 HDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVD------LWRL----G 361 (691)
T ss_pred ccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEecccccc------ceec----c
Confidence 999999988653211110 0000000 0000011111112222223333333334222110 0100 0
Q ss_pred CCCCCCCC-CCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCC-------------------------
Q 000251 545 VPPPPMPP-QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD------------------------- 598 (1784)
Q Consensus 545 ~~~~~~~~-~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~t------------------------- 598 (1784)
..... ........+........|.+.+.||+|++|+.+.- ..++||.+..
T Consensus 362 ---S~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ft 437 (691)
T KOG2048|consen 362 ---SVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFT 437 (691)
T ss_pred ---CcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEE
Confidence 00000 00111122233445567889999999999988762 1233333221
Q ss_pred -----------------------C--ceEEEE--ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEecc
Q 000251 599 -----------------------G--SLVHSL--TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 651 (1784)
Q Consensus 599 -----------------------g--klv~~L--~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~ 651 (1784)
+ +.+..+ ++....|..|+.+| ++.++|+.+.+|.|.+|++.+++.-.....-
T Consensus 438 id~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss-dG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl 516 (691)
T KOG2048|consen 438 IDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS-DGNYIAAISTRGQIFVYNLETLESHLLKVRL 516 (691)
T ss_pred ecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC-CCCEEEEEeccceEEEEEcccceeecchhcc
Confidence 0 000001 12345688899999 6777788889999999999888765555445
Q ss_pred CcceEEEEEc-CCCCEEEEEeCCCeEEEEECCC
Q 000251 652 RFRLVDGKFS-PDGASIILSDDVGQLYILNTGQ 683 (1784)
Q Consensus 652 ~~~ItslafS-PDGk~LAsgs~DG~I~IWdl~s 683 (1784)
...|+.++|+ ++-..|+++..+++|+-||+..
T Consensus 517 n~~vTa~~~~~~~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 517 NIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred CcceeeeeccccccCcEEEEecCCeEEEEecch
Confidence 5789999999 4667899999999999999843
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-20 Score=198.83 Aligned_cols=293 Identities=15% Similarity=0.218 Sum_probs=225.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEECC------CC-----Ce----eEEecCCCCceEEEEecCCCCccEEEEEE
Q 000251 311 HEGDITDLAVSSNNALVASASNDCIIRVWRLP------DG-----LP----ISVLRGHTAAVTAIAFSPRPGSVYQLLSS 375 (1784)
Q Consensus 311 H~~~VtsLafSpDg~lLASGS~DGtIrVWDl~------tg-----k~----i~~L~gH~~~VtsLafSPdg~~~~~LaSg 375 (1784)
....|.+++|.|.|.+.|+|+...+++|--.. .+ .+ .+.-+.|.+.|+|.+|+|.|. +|++|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge---liatg 107 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE---LIATG 107 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC---eEEec
Confidence 56789999999999999999999999987432 22 11 122356899999999999998 99999
Q ss_pred eCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECC----CCCEEEEeeC-CceEEEEcCCC
Q 000251 376 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA----NGTVFVTGSS-DTLARVWNACK 450 (1784)
Q Consensus 376 s~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSp----dG~~LasGs~-DG~IrVWDl~t 450 (1784)
+.|.+|++.-++...+.. ..+...+..|.+.|..++|-. .|.+|++++. |..|++-|..+
T Consensus 108 sndk~ik~l~fn~dt~~~---------------~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~ 172 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNA---------------TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR 172 (350)
T ss_pred CCCceEEEEecccccccc---------------cCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence 999999997665433211 112223456889999999964 3456776653 56677767644
Q ss_pred CCCCCCCCCCcceeeecCCCCCceEEE-EccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCC
Q 000251 451 PNTDDSDQPNHEIDVLSGHENDVNYVQ-FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 529 (1784)
Q Consensus 451 g~~~~s~~~~~~i~~l~gH~~~V~sLa-fSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~ 529 (1784)
+..+..+.+|++.|.++- |+ +-++++|+.|.+|++||++-..
T Consensus 173 ---------g~~~~a~sghtghilalyswn----------------------------~~m~~sgsqdktirfwdlrv~~ 215 (350)
T KOG0641|consen 173 ---------GQGFHALSGHTGHILALYSWN----------------------------GAMFASGSQDKTIRFWDLRVNS 215 (350)
T ss_pred ---------CCcceeecCCcccEEEEEEec----------------------------CcEEEccCCCceEEEEeeeccc
Confidence 556788999999998773 33 2489999999999999998432
Q ss_pred CCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCC
Q 000251 530 SHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHT 609 (1784)
Q Consensus 530 ~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~ 609 (1784)
....... ....--.....|.+++..|.|++|++|-.|....+||++.|+.++.+..|+
T Consensus 216 ~v~~l~~----------------------~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phs 273 (350)
T KOG0641|consen 216 CVNTLDN----------------------DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHS 273 (350)
T ss_pred eeeeccC----------------------cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCc
Confidence 1111100 000000123569999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC----ceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000251 610 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG----IPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 681 (1784)
Q Consensus 610 ~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG----~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl 681 (1784)
..|.++.|+| +..++++++.|..|++-|+.-. -++.....|...+..+.|+|..-.+++.+.|.++.+|-+
T Consensus 274 adir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 274 ADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred cceeEEEeCC-CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 9999999999 8899999999999999998532 234445567888889999999999999999999999975
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-22 Score=214.88 Aligned_cols=260 Identities=23% Similarity=0.356 Sum_probs=208.8
Q ss_pred EEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCC---eEEEEEecCCCCeEEEEEcC--CCCEEEEEeCCCEEEEE
Q 000251 265 RVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---YCLASCRGHEGDITDLAVSS--NNALVASASNDCIIRVW 339 (1784)
Q Consensus 265 tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tg---k~l~tL~gH~~~VtsLafSp--Dg~lLASGS~DGtIrVW 339 (1784)
.-.+|.+.|..+..+--|++|||++.|++|+|+.+... +++.+|.||.++|+.++|.. -|.+||+++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34679999999999999999999999999999999754 57889999999999999987 89999999999999999
Q ss_pred ECCCCC--eeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCC
Q 000251 340 RLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 417 (1784)
Q Consensus 340 Dl~tgk--~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~ 417 (1784)
.-.+|+ .......|...|++|+|.|.+- ...|++++.||.|.|.+++....-. .......
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~waphey-gl~LacasSDG~vsvl~~~~~g~w~-----------------t~ki~~a 147 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEY-GLLLACASSDGKVSVLTYDSSGGWT-----------------TSKIVFA 147 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeeccccccc-ceEEEEeeCCCcEEEEEEcCCCCcc-----------------chhhhhc
Confidence 988774 3456678999999999999864 3489999999999999887542111 1122345
Q ss_pred CCCceEEEEECCC---C-----------CEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcc
Q 000251 418 QSHQIFCCAFNAN---G-----------TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 483 (1784)
Q Consensus 418 h~~~V~sLafSpd---G-----------~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdgl 483 (1784)
|.-.|++++|.|. | +.|++|+.|..|+||+...+ ....-..+.+|.+.|..++|.|.--
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-------~w~~e~~l~~H~dwVRDVAwaP~~g 220 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-------SWKLERTLEGHKDWVRDVAWAPSVG 220 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc-------chhhhhhhhhcchhhhhhhhccccC
Confidence 7888999999985 5 56999999999999999653 2344455899999999999999641
Q ss_pred cccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceec
Q 000251 484 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 563 (1784)
Q Consensus 484 as~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l 563 (1784)
+....|++|+.||++.||-... ....|.. ..+
T Consensus 221 ----------------------l~~s~iAS~SqDg~viIwt~~~-----e~e~wk~---------------------tll 252 (299)
T KOG1332|consen 221 ----------------------LPKSTIASCSQDGTVIIWTKDE-----EYEPWKK---------------------TLL 252 (299)
T ss_pred ----------------------CCceeeEEecCCCcEEEEEecC-----ccCcccc---------------------ccc
Confidence 1135899999999999996652 1122221 112
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECC
Q 000251 564 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAA 597 (1784)
Q Consensus 564 ~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~ 597 (1784)
......+..+.||..|..|++++.|+.|.+|--.
T Consensus 253 ~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 253 EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 2345679999999999999999999999999753
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-21 Score=240.25 Aligned_cols=268 Identities=16% Similarity=0.186 Sum_probs=200.4
Q ss_pred CceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECC-CCCE
Q 000251 355 AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTV 433 (1784)
Q Consensus 355 ~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSp-dG~~ 433 (1784)
..|....+++++. .+++++.+.....|+...+..+ +.... .|+.........+|.+.|++++|+| ++.+
T Consensus 21 ~~i~~~~~~~d~~---~~~~~n~~~~a~~w~~~gg~~v--~~~~~-----~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~ 90 (493)
T PTZ00421 21 LNVTPSTALWDCS---NTIACNDRFIAVPWQQLGSTAV--LKHTD-----YGKLASNPPILLGQEGPIIDVAFNPFDPQK 90 (493)
T ss_pred eccccccccCCCC---CcEeECCceEEEEEecCCceEE--eeccc-----cccCCCCCceEeCCCCCEEEEEEcCCCCCE
Confidence 4456666777755 5788888888888987655321 11111 1111111233567899999999999 8899
Q ss_pred EEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEE
Q 000251 434 FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT 513 (1784)
Q Consensus 434 LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVS 513 (1784)
|++|+.|++|+|||+.+.... ......+..+.+|...|.+++|+|.+ .++|++
T Consensus 91 LaSgS~DgtIkIWdi~~~~~~--~~~~~~l~~L~gH~~~V~~l~f~P~~-------------------------~~iLaS 143 (493)
T PTZ00421 91 LFTASEDGTIMGWGIPEEGLT--QNISDPIVHLQGHTKKVGIVSFHPSA-------------------------MNVLAS 143 (493)
T ss_pred EEEEeCCCEEEEEecCCCccc--cccCcceEEecCCCCcEEEEEeCcCC-------------------------CCEEEE
Confidence 999999999999999653211 11224567789999999999999875 258999
Q ss_pred EeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEE
Q 000251 514 CSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICV 593 (1784)
Q Consensus 514 gS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~V 593 (1784)
|+.|++|+|||+.++. ....+..|...|.+++|+|+|.+|++++.|+.|+|
T Consensus 144 gs~DgtVrIWDl~tg~-----------------------------~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrI 194 (493)
T PTZ00421 144 AGADMVVNVWDVERGK-----------------------------AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNI 194 (493)
T ss_pred EeCCCEEEEEECCCCe-----------------------------EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEE
Confidence 9999999999998532 23345567888999999999999999999999999
Q ss_pred EECCCCceEEEEecCCCC-eEEEEEecCCCcEEEEE---eCCCcEEEEeCCCCc-eEEEEeccC-cceEEEEEcCCCCEE
Q 000251 594 WNAADGSLVHSLTGHTES-TYVLDVHPFNPRIAMSA---GYDGKTIVWDIWEGI-PIRIYEISR-FRLVDGKFSPDGASI 667 (1784)
Q Consensus 594 WDl~tgklv~~L~gH~~~-VtsLafSPdd~~lLaSg---s~DG~IrIWDl~tG~-~l~tl~~~~-~~ItslafSPDGk~L 667 (1784)
||+.+++.+..+.+|.+. +..+.|++.++.++.+| +.|+.|+|||+.+.. ++.....+. ..+....|++|+.+|
T Consensus 195 wD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L 274 (493)
T PTZ00421 195 IDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLL 274 (493)
T ss_pred EECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEE
Confidence 999999999999999875 34678888555554444 248999999998754 444443333 345567899999999
Q ss_pred EEEe-CCCeEEEEECCCCcccc
Q 000251 668 ILSD-DVGQLYILNTGQGESQK 688 (1784)
Q Consensus 668 Asgs-~DG~I~IWdl~sGe~~~ 688 (1784)
++++ .||.|++|++..++.+.
T Consensus 275 ~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 275 YIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred EEEEeCCCeEEEEEeeCCceEE
Confidence 9887 59999999998876543
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=225.44 Aligned_cols=274 Identities=18% Similarity=0.256 Sum_probs=224.3
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeE----E-------------e-cCCCCceEEEEecCCCC
Q 000251 306 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS----V-------------L-RGHTAAVTAIAFSPRPG 367 (1784)
Q Consensus 306 ~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~----~-------------L-~gH~~~VtsLafSPdg~ 367 (1784)
..+..|.-.|++|+++|+++++++++.+|+|.-|++.+|+... . - .+|...|.+++.++|++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 3456799999999999999999999999999999998886331 1 1 26888999999999998
Q ss_pred ccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEc
Q 000251 368 SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447 (1784)
Q Consensus 368 ~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWD 447 (1784)
+|++|+.|..|.||+.++.+.+..+ .+|.+.|.+++|-.....+++++.|..|++|+
T Consensus 216 ---ylatgg~d~~v~Iw~~~t~ehv~~~--------------------~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~ 272 (479)
T KOG0299|consen 216 ---YLATGGRDRHVQIWDCDTLEHVKVF--------------------KGHRGAVSSLAFRKGTSELYSASADRSVKVWS 272 (479)
T ss_pred ---EEEecCCCceEEEecCcccchhhcc--------------------cccccceeeeeeecCccceeeeecCCceEEEe
Confidence 9999999999999999988765543 46889999999998888999999999999999
Q ss_pred CCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCC
Q 000251 448 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 527 (1784)
Q Consensus 448 l~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t 527 (1784)
+.. ...+.++.+|.+.|..|...... ..+-+|+.|+++++|++..
T Consensus 273 ~~~---------~s~vetlyGHqd~v~~IdaL~re--------------------------R~vtVGgrDrT~rlwKi~e 317 (479)
T KOG0299|consen 273 IDQ---------LSYVETLYGHQDGVLGIDALSRE--------------------------RCVTVGGRDRTVRLWKIPE 317 (479)
T ss_pred hhH---------hHHHHHHhCCccceeeechhccc--------------------------ceEEeccccceeEEEeccc
Confidence 953 45677889999999998776543 3444566999999999853
Q ss_pred CCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEe-
Q 000251 528 RRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT- 606 (1784)
Q Consensus 528 ~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~- 606 (1784)
.....+.++...+-|++|-.+ ..+++|+.+|.|.+|++...+++.+..
T Consensus 318 ------------------------------esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 318 ------------------------------ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred ------------------------------cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeec
Confidence 112234456778899998654 578999999999999999998887653
Q ss_pred cC-----------CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC----ceEEEEeccCcceEEEEEcCCCCEEEEE
Q 000251 607 GH-----------TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG----IPIRIYEISRFRLVDGKFSPDGASIILS 670 (1784)
Q Consensus 607 gH-----------~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG----~~l~tl~~~~~~ItslafSPDGk~LAsg 670 (1784)
.| ...|++|+..| +..++++|+.+|.|++|-+.+| .++..+. -.+-|..++|+++|+.|++|
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cccccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEe
Confidence 22 12789999999 8899999999999999999988 3444444 45678999999999977776
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=228.24 Aligned_cols=299 Identities=20% Similarity=0.300 Sum_probs=236.1
Q ss_pred EEcCC-cEEEEEECCCCeEEEEEecC-CCCeEEEEEcCCCCEEEEEeC-CCEEEEEECCCCCeeEEecCCCCceEEEEec
Q 000251 287 TGSDD-RLVKIWSMETAYCLASCRGH-EGDITDLAVSSNNALVASASN-DCIIRVWRLPDGLPISVLRGHTAAVTAIAFS 363 (1784)
Q Consensus 287 TGS~D-GtIkIWDl~Tgk~l~tL~gH-~~~VtsLafSpDg~lLASGS~-DGtIrVWDl~tgk~i~~L~gH~~~VtsLafS 363 (1784)
+++.| ..+.+||+.||..+.++++. ...-.++..- .+.+++++.. ...|.+|.+..........--.++|.+++-+
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 33444 46999999999999998865 2222222222 2356666543 5679999986654444333456889999999
Q ss_pred CCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceE
Q 000251 364 PRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 443 (1784)
Q Consensus 364 Pdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~I 443 (1784)
|.|. +|+.|+..|.|.+|.+.+|.++..+ ..|-..|+|+.|+-||.+|++|+.||.|
T Consensus 91 n~G~---~l~ag~i~g~lYlWelssG~LL~v~--------------------~aHYQ~ITcL~fs~dgs~iiTgskDg~V 147 (476)
T KOG0646|consen 91 NLGY---FLLAGTISGNLYLWELSSGILLNVL--------------------SAHYQSITCLKFSDDGSHIITGSKDGAV 147 (476)
T ss_pred CCce---EEEeecccCcEEEEEeccccHHHHH--------------------HhhccceeEEEEeCCCcEEEecCCCccE
Confidence 9985 7777779999999999999987665 2478889999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEE
Q 000251 444 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 523 (1784)
Q Consensus 444 rVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIW 523 (1784)
.+|.+...-.........++..+..|.-+|+.+...+.+. ..+|+|+|.|.++++|
T Consensus 148 ~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~------------------------~~rl~TaS~D~t~k~w 203 (476)
T KOG0646|consen 148 LVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGT------------------------NARLYTASEDRTIKLW 203 (476)
T ss_pred EEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCc------------------------cceEEEecCCceEEEE
Confidence 9999865333233335667888999999999999886641 3689999999999999
Q ss_pred eCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCC-----
Q 000251 524 IPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD----- 598 (1784)
Q Consensus 524 Dl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~t----- 598 (1784)
|+..+. .......+..+.+++.+|-++.+++|+.+|.|.+.++..
T Consensus 204 dlS~g~------------------------------LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~ 253 (476)
T KOG0646|consen 204 DLSLGV------------------------------LLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQS 253 (476)
T ss_pred Eeccce------------------------------eeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccc
Confidence 998633 122233456799999999999999999999999988743
Q ss_pred -----------CceEEEEecCCC--CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCC
Q 000251 599 -----------GSLVHSLTGHTE--STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDG 664 (1784)
Q Consensus 599 -----------gklv~~L~gH~~--~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDG 664 (1784)
+..+..+.||.+ .|+|++++- ++.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|--
T Consensus 254 ~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 254 AGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred ccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 235667889998 999999998 88999999999999999999999999998778899998887653
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=212.64 Aligned_cols=270 Identities=17% Similarity=0.256 Sum_probs=216.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCc
Q 000251 311 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 390 (1784)
Q Consensus 311 H~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~ 390 (1784)
....|.+|.|+|.+..|++++.||++++|++........+. |..++.+++|.++. .+++|+.||.|+.+|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~----~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADES----TIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCc----eEEEeccCceEEEEEecCCc
Confidence 46789999999999999999999999999998875555554 89999999999975 69999999999999999876
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCC
Q 000251 391 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 470 (1784)
Q Consensus 391 ~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~ 470 (1784)
... ...|...|.||.+++-...+++|+-|++|++||.+..... ..+ ...
T Consensus 87 ~~~---------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~---------~~~-d~~ 135 (323)
T KOG1036|consen 87 EDQ---------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV---------GTF-DQG 135 (323)
T ss_pred cee---------------------eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc---------ccc-ccC
Confidence 322 3458889999999998889999999999999999742111 111 122
Q ss_pred CCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCC
Q 000251 471 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 550 (1784)
Q Consensus 471 ~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~ 550 (1784)
..|.++... ++.|++|+.|..+.+||+++....
T Consensus 136 kkVy~~~v~----------------------------g~~LvVg~~~r~v~iyDLRn~~~~------------------- 168 (323)
T KOG1036|consen 136 KKVYCMDVS----------------------------GNRLVVGTSDRKVLIYDLRNLDEP------------------- 168 (323)
T ss_pred ceEEEEecc----------------------------CCEEEEeecCceEEEEEcccccch-------------------
Confidence 367777665 368999999999999999963310
Q ss_pred CCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCC----ceEEEEecCCC---------CeEEEEE
Q 000251 551 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG----SLVHSLTGHTE---------STYVLDV 617 (1784)
Q Consensus 551 ~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tg----klv~~L~gH~~---------~VtsLaf 617 (1784)
...+.......+.||++-|++.-+++++-||+|.+=.+... +....|+.|.. +|++|+|
T Consensus 169 --------~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 169 --------FQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred --------hhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence 01112233456899999999999999999999998777655 33345665632 6899999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeC
Q 000251 618 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDD 672 (1784)
Q Consensus 618 SPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~ 672 (1784)
|| -...|||||.||.|.+||+.+.+.+..+......|..++|+.||..||+++.
T Consensus 241 hp-~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 241 HP-IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cc-ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99 4678899999999999999999999998877778999999999999999865
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=209.83 Aligned_cols=248 Identities=23% Similarity=0.316 Sum_probs=196.9
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEE
Q 000251 304 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383 (1784)
Q Consensus 304 ~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrI 383 (1784)
.+..+..|.+.|+++|.+ +.++|+|+.|-+|+|||+.....+..+-.|.+.|+++.|.+.-.. ..|++|+.||.|.+
T Consensus 35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~-shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSK-SHLLSGSDDGHIII 111 (362)
T ss_pred ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcch-hheeeecCCCcEEE
Confidence 355667899999999995 899999999999999999999999999999999999999987532 27999999999999
Q ss_pred EecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcce
Q 000251 384 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 463 (1784)
Q Consensus 384 WDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i 463 (1784)
|+...-.++..+ .+|.++|+.++.+|.|++.++.+.|+.+++||+-.+.. ..+
T Consensus 112 w~~~~W~~~~sl--------------------K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~-------a~v 164 (362)
T KOG0294|consen 112 WRVGSWELLKSL--------------------KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV-------AFV 164 (362)
T ss_pred EEcCCeEEeeee--------------------cccccccceeEecCCCceEEEEcCCceeeeehhhcCcc-------cee
Confidence 999876555444 46888899999999999999999999999999976532 111
Q ss_pred eeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccc
Q 000251 464 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 543 (1784)
Q Consensus 464 ~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l 543 (1784)
..+. ..-+.|.|+|.| ++++.++.+ .|-||.+.+....
T Consensus 165 ~~L~---~~at~v~w~~~G--------------------------d~F~v~~~~-~i~i~q~d~A~v~------------ 202 (362)
T KOG0294|consen 165 LNLK---NKATLVSWSPQG--------------------------DHFVVSGRN-KIDIYQLDNASVF------------ 202 (362)
T ss_pred eccC---CcceeeEEcCCC--------------------------CEEEEEecc-EEEEEecccHhHh------------
Confidence 1121 222348899887 677777766 4778877642211
Q ss_pred cCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEec-CCC
Q 000251 544 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP-FNP 622 (1784)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSP-dd~ 622 (1784)
........+.++.|- ++.+|++|+.|+.|.+||..++.+...+.+|...|.++.+-- ..+
T Consensus 203 ------------------~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~ 263 (362)
T KOG0294|consen 203 ------------------REIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH 263 (362)
T ss_pred ------------------hhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc
Confidence 111112345555554 677899999999999999999999999999999999998532 256
Q ss_pred cEEEEEeCCCcEEEEeCCCC
Q 000251 623 RIAMSAGYDGKTIVWDIWEG 642 (1784)
Q Consensus 623 ~lLaSgs~DG~IrIWDl~tG 642 (1784)
.+|+|++.||.|+|||+...
T Consensus 264 ~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 264 EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEEeccCceEEEEEcccc
Confidence 89999999999999999765
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-20 Score=236.73 Aligned_cols=215 Identities=10% Similarity=0.198 Sum_probs=165.7
Q ss_pred cccccceEEEEEccCCCCEEEEEECCC-CCEEEEEcCCcEEEEEECCCCe--------EEEEEecCCCCeEEEEEcCCCC
Q 000251 255 TMVQKMQNIKRVRGHRNAVYCAIFDRS-GRYVITGSDDRLVKIWSMETAY--------CLASCRGHEGDITDLAVSSNNA 325 (1784)
Q Consensus 255 ~~~~~~k~l~tL~GH~~~Vt~VaFSPD-G~~LATGS~DGtIkIWDl~Tgk--------~l~tL~gH~~~VtsLafSpDg~ 325 (1784)
|...+...+..|.||.+.|.+++|+|+ +.+||||+.||+|+|||+.++. .+..+.+|...|.+|+|+|++.
T Consensus 59 ~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~ 138 (568)
T PTZ00420 59 ENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNY 138 (568)
T ss_pred eecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCC
Confidence 444445678899999999999999997 7899999999999999997642 3456789999999999999987
Q ss_pred E-EEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcc
Q 000251 326 L-VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 404 (1784)
Q Consensus 326 l-LASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~ 404 (1784)
. |++++.|++|+|||+.+++.+..+. |...|.+++|+|++. +|++++.|+.|+|||++++..+..+.
T Consensus 139 ~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~---lLat~s~D~~IrIwD~Rsg~~i~tl~-------- 206 (568)
T PTZ00420 139 YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN---LLSGTCVGKHMHIIDPRKQEIASSFH-------- 206 (568)
T ss_pred eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC---EEEEEecCCEEEEEECCCCcEEEEEe--------
Confidence 5 5789999999999999998877776 668899999999997 89999999999999999987665442
Q ss_pred cCCCCCCCCCCCCCCCc-----eEEEEECCCCCEEEEeeCCc----eEEEEcCCCCCCCCCCCCCcceeee--cCCCCCc
Q 000251 405 AGRNMAPSSSAGPQSHQ-----IFCCAFNANGTVFVTGSSDT----LARVWNACKPNTDDSDQPNHEIDVL--SGHENDV 473 (1784)
Q Consensus 405 ~g~~~~~~~s~~~h~~~-----V~sLafSpdG~~LasGs~DG----~IrVWDl~tg~~~~s~~~~~~i~~l--~gH~~~V 473 (1784)
+|.+. +....|++++.+|++++.++ .|+|||++.. ...+..+ ..+.+.+
T Consensus 207 ------------gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~--------~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 207 ------------IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT--------TSALVTMSIDNASAPL 266 (568)
T ss_pred ------------cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC--------CCceEEEEecCCccce
Confidence 23322 33445678999999988764 7999999742 1222222 2222222
Q ss_pred eEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCC
Q 000251 474 NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 527 (1784)
Q Consensus 474 ~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t 527 (1784)
...-..+. +.++++|+.|++|++|++..
T Consensus 267 ~p~~D~~t--------------------------g~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 267 IPHYDEST--------------------------GLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EEeeeCCC--------------------------CCEEEEEECCCeEEEEEccC
Confidence 22222222 25788999999999999875
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-19 Score=215.18 Aligned_cols=221 Identities=19% Similarity=0.186 Sum_probs=156.6
Q ss_pred CCCCeeEEEEcC-CCCEEEEEecCCeEEEEECCCC-------ceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 000251 566 TPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAADG-------SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 637 (1784)
Q Consensus 566 h~~~VtsVafSP-DG~~LaSgs~DGsI~VWDl~tg-------klv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIW 637 (1784)
....|+.+.|.| |...||+++.||.|+||.+..+ .+...+.+|...|+.+.|||--..+|+++++|-+|+||
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 345689999998 6778999999999999998764 45568899999999999999888899999999999999
Q ss_pred eCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc--------cccccceeecCCCcceEEccCC
Q 000251 638 DIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ--------KDAKYDQFFLGDYRPLVQDTYG 709 (1784)
Q Consensus 638 Dl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~~--------~~~~~~~~fs~D~r~Lv~d~~g 709 (1784)
|+.+++....+.+|...|.+++|||||+.+|+.+.||+|+||...+++.. ........|.-|++.++.....
T Consensus 706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred ehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 99999999999999999999999999999999999999999998876542 1222445788899988765544
Q ss_pred ceeecccccc----cCcCCCCCcccCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeecCCCcc
Q 000251 710 NVLDQETQLA----PHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLD 785 (1784)
Q Consensus 710 ~vld~~tql~----phl~~l~~~L~D~~~~p~p~~~Q~l~~~rr~~v~~iAfSPDG~~LAvg~d~s~~~~v~lw~l~~~~ 785 (1784)
.+-..+.++- -.+.++.....|+...+ |+| .+.+|+..|.+. .-.++.+.++.+..-.
T Consensus 786 k~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~-------LvP---------~YD~Ds~~lflt--GKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 786 KSSERQVQMYDAQTLDLRPLYTQVLDVAPSP-------LVP---------HYDYDSNVLFLT--GKGDRFVNMYEVIYES 847 (1012)
T ss_pred ccchhhhhhhhhhhccCCcceeeeecccCcc-------ccc---------cccCCCceEEEe--cCCCceEEEEEecCCC
Confidence 3322111110 11122222222222211 111 246676555444 1456777787775444
Q ss_pred cccCCC-----ccccceeeeCCCC
Q 000251 786 VMIDPL-----PEFIDVMDWEPEN 804 (1784)
Q Consensus 786 ~li~pl-----p~~i~~~~wsPDg 804 (1784)
.++-|+ |.....++|.+..
T Consensus 848 Py~lpl~~f~sp~~hqGl~fl~K~ 871 (1012)
T KOG1445|consen 848 PYLLPLAPFMSPVGHQGLAFLQKL 871 (1012)
T ss_pred ceeeecccccCCCcccceeeeccc
Confidence 444333 3445566777663
|
|
| >PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-22 Score=190.26 Aligned_cols=76 Identities=18% Similarity=0.491 Sum_probs=72.4
Q ss_pred CCceEEEEeCCCCCCCceEeehhhHHHHhcCCCCcCceeEEeecCCCCCCCcEEEEEEEEecCCCC-CCCCCCCceeE
Q 000251 1561 SNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSS-EFPDSPWERYT 1637 (1784)
Q Consensus 1561 ~~~~f~v~~~~~~~~~dFlV~~~~y~~a~~~~w~~g~rf~m~~e~e~~~~~~w~~G~I~~~~~~~p-~~P~S~W~~l~ 1637 (1784)
++..|.|+|+|+++.+||||++++|++|++.+|++||||||.||+||. ..++|+|||++|++.|| .||+|+||||+
T Consensus 7 ~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~~~~~~GmRfkM~fE~eds-~~~~~~GtI~~v~~~dp~~w~~S~WR~Lq 83 (83)
T PF06507_consen 7 TGSPFEVFYYPRASPSEFVVPASKYDKALNHPWSVGMRFKMRFETEDS-SERRWQGTIVGVSDLDPIRWPGSKWRMLQ 83 (83)
T ss_pred cCCeEEEEECCCCCCcceEEEHHHHHHHhcCCCCCCcEEEEEeccCCC-ccceeeeEEeEeeccCCCCCCCCCcccCc
Confidence 578899999999999999999999999999999999999999999998 66888999999999999 59999999996
|
The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-19 Score=212.79 Aligned_cols=276 Identities=12% Similarity=0.071 Sum_probs=200.8
Q ss_pred CCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCc
Q 000251 324 NALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 403 (1784)
Q Consensus 324 g~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~ 403 (1784)
+.++++++.|+.|++||+.+++.+..+..+.. +.+++|+|++. ..+++++.++.|++||+.+++....+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~--~l~~~~~~~~~v~~~d~~~~~~~~~~~------- 70 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGK--LLYVCASDSDTIQVIDLATGEVIGTLP------- 70 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCC--EEEEEECCCCeEEEEECCCCcEEEecc-------
Confidence 35788999999999999999999888876544 67899999986 234677889999999998876544331
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEe-eCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCc
Q 000251 404 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG-SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 482 (1784)
Q Consensus 404 ~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasG-s~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg 482 (1784)
....+..++|+|+|+.++++ +.++.|++||+.+. ..+..+. +...+.+++|+|++
T Consensus 71 --------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~---------~~~~~~~-~~~~~~~~~~~~dg 126 (300)
T TIGR03866 71 --------------SGPDPELFALHPNGKILYIANEDDNLVTVIDIETR---------KVLAEIP-VGVEPEGMAVSPDG 126 (300)
T ss_pred --------------CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCC---------eEEeEee-CCCCcceEEECCCC
Confidence 11224578999999877654 56899999999652 2233332 22346789999987
Q ss_pred ccccccccCCCCCCCCCccccccccCCeEEEEeCCC-cEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCce
Q 000251 483 VASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG-SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 561 (1784)
Q Consensus 483 las~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DG-tIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~ 561 (1784)
..+++++.++ .+.+||..+.... .
T Consensus 127 --------------------------~~l~~~~~~~~~~~~~d~~~~~~~-----------------------------~ 151 (300)
T TIGR03866 127 --------------------------KIVVNTSETTNMAHFIDTKTYEIV-----------------------------D 151 (300)
T ss_pred --------------------------CEEEEEecCCCeEEEEeCCCCeEE-----------------------------E
Confidence 5777777765 4667787643210 0
Q ss_pred eccCCCCCeeEEEEcCCCCEEEEE-ecCCeEEEEECCCCceEEEEecCCC-------CeEEEEEecCCCcEEEEEeCCCc
Q 000251 562 RILPTPRGVNMIVWSLDNRFVLAA-IMDCRICVWNAADGSLVHSLTGHTE-------STYVLDVHPFNPRIAMSAGYDGK 633 (1784)
Q Consensus 562 ~l~~h~~~VtsVafSPDG~~LaSg-s~DGsI~VWDl~tgklv~~L~gH~~-------~VtsLafSPdd~~lLaSgs~DG~ 633 (1784)
.. .....+..++|+++|++|+++ ..++.|++||+.+++.+..+..+.. ....++|+|++..++++.+.++.
T Consensus 152 ~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~ 230 (300)
T TIGR03866 152 NV-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR 230 (300)
T ss_pred EE-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe
Confidence 00 112235678999999988654 4689999999999988877653321 23468899955555555566778
Q ss_pred EEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCcccccc
Q 000251 634 TIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILS-DDVGQLYILNTGQGESQKDA 690 (1784)
Q Consensus 634 IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsg-s~DG~I~IWdl~sGe~~~~~ 690 (1784)
|.+||+.+++.+..+. +...+.+++|+|+|++|+++ ..+|.|.|||+.+++.+..+
T Consensus 231 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 231 VAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred EEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 9999999998877664 34578899999999999886 56899999999998876544
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-20 Score=205.63 Aligned_cols=281 Identities=16% Similarity=0.217 Sum_probs=212.9
Q ss_pred CCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEE
Q 000251 270 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 349 (1784)
Q Consensus 270 ~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~ 349 (1784)
...|..|.|+|.+..|+.++.||++++|++....+...++ |..++.+++|.+ ...+++|+.||.|+++|+.++... .
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~ 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-Q 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-e
Confidence 5789999999999999999999999999999886666665 899999999996 557899999999999999887654 4
Q ss_pred ecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECC
Q 000251 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA 429 (1784)
Q Consensus 350 L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSp 429 (1784)
+..|...|.||.+++..+ .+++|+.|++|++||.+.......+ .....|.|+..+
T Consensus 90 igth~~~i~ci~~~~~~~---~vIsgsWD~~ik~wD~R~~~~~~~~---------------------d~~kkVy~~~v~- 144 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVG---CVISGSWDKTIKFWDPRNKVVVGTF---------------------DQGKKVYCMDVS- 144 (323)
T ss_pred eccCCCceEEEEeeccCC---eEEEcccCccEEEEecccccccccc---------------------ccCceEEEEecc-
Confidence 556999999999998765 8999999999999999864333222 123368887764
Q ss_pred CCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCC
Q 000251 430 NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 509 (1784)
Q Consensus 430 dG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~ 509 (1784)
|..|++|+.+..|.+||+++..... ...-..-.-.+.+|++.|++ .
T Consensus 145 -g~~LvVg~~~r~v~iyDLRn~~~~~-------q~reS~lkyqtR~v~~~pn~--------------------------e 190 (323)
T KOG1036|consen 145 -GNRLVVGTSDRKVLIYDLRNLDEPF-------QRRESSLKYQTRCVALVPNG--------------------------E 190 (323)
T ss_pred -CCEEEEeecCceEEEEEcccccchh-------hhccccceeEEEEEEEecCC--------------------------C
Confidence 6789999999999999998643211 11122334567899998865 5
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCC
Q 000251 510 NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC 589 (1784)
Q Consensus 510 ~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DG 589 (1784)
-+++++.||.|.+=.+...... . .+.+.++..... ..-...-.+|++|+|+|-..+||||+.||
T Consensus 191 Gy~~sSieGRVavE~~d~s~~~-~----skkyaFkCHr~~-----------~~~~~~~yPVNai~Fhp~~~tfaTgGsDG 254 (323)
T KOG1036|consen 191 GYVVSSIEGRVAVEYFDDSEEA-Q----SKKYAFKCHRLS-----------EKDTEIIYPVNAIAFHPIHGTFATGGSDG 254 (323)
T ss_pred ceEEEeecceEEEEccCCchHH-h----hhceeEEeeecc-----------cCCceEEEEeceeEeccccceEEecCCCc
Confidence 7899999999988655542100 0 001111100000 00001124699999999999999999999
Q ss_pred eEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEe
Q 000251 590 RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG 629 (1784)
Q Consensus 590 sI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs 629 (1784)
.|.+||+.+.+.+..|......|..++|+- ++..||.|+
T Consensus 255 ~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~ 293 (323)
T KOG1036|consen 255 IVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIAS 293 (323)
T ss_pred eEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEe
Confidence 999999999999999988888899999998 566666664
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-20 Score=212.25 Aligned_cols=282 Identities=15% Similarity=0.192 Sum_probs=235.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcc
Q 000251 312 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 391 (1784)
Q Consensus 312 ~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~ 391 (1784)
...|+++...+....+++|+.|.++.++|...++.+..+.||...|+.+.|+|+.. .+++++.|-.|++|.......
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~---~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLD---TVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchh---heeecCCcceEEeeccccccC
Confidence 35688888888878999999999999999999999999999999999999999986 899999999999999875542
Q ss_pred cceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecC--C
Q 000251 392 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG--H 469 (1784)
Q Consensus 392 l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~g--H 469 (1784)
. ....+|...|+.+..+|.|.+|++++.||+..+.|++++. .+..... .
T Consensus 296 ~--------------------~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~---------~lt~vs~~~s 346 (506)
T KOG0289|consen 296 P--------------------TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS---------QLTVVSDETS 346 (506)
T ss_pred c--------------------cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc---------EEEEEeeccc
Confidence 2 2235688999999999999999999999999999997643 3332222 2
Q ss_pred CCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCC
Q 000251 470 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 549 (1784)
Q Consensus 470 ~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~ 549 (1784)
.-.+++.+|+|+| -.|.+|..||.|+|||+.++.
T Consensus 347 ~v~~ts~~fHpDg--------------------------Lifgtgt~d~~vkiwdlks~~-------------------- 380 (506)
T KOG0289|consen 347 DVEYTSAAFHPDG--------------------------LIFGTGTPDGVVKIWDLKSQT-------------------- 380 (506)
T ss_pred cceeEEeeEcCCc--------------------------eEEeccCCCceEEEEEcCCcc--------------------
Confidence 3458999999998 488999999999999998622
Q ss_pred CCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCC-CCeEEEEEecCCCcEEEEE
Q 000251 550 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHT-ESTYVLDVHPFNPRIAMSA 628 (1784)
Q Consensus 550 ~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~-~~VtsLafSPdd~~lLaSg 628 (1784)
....+.+|.++|..|+|+.+|-|||+++.|+.|++||++.-+...++.-.. ..|.++.|.+ .+.+|+.+
T Consensus 381 ---------~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~ 450 (506)
T KOG0289|consen 381 ---------NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIA 450 (506)
T ss_pred ---------ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEee
Confidence 334566799999999999999999999999999999999888777765332 3689999988 67788888
Q ss_pred eCCCcEEEEeCC--CCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000251 629 GYDGKTIVWDIW--EGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 681 (1784)
Q Consensus 629 s~DG~IrIWDl~--tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl 681 (1784)
|.|=.|++++-. +..++..+..|.+..+.+.|....++|++++.|..++++.+
T Consensus 451 g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 451 GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 877666666533 45677778778888899999999999999999988888754
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.3e-20 Score=204.04 Aligned_cols=308 Identities=15% Similarity=0.164 Sum_probs=217.5
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCC-----eeEEecCCCCceEEEEecCCCCccEEEEEEeCCCc
Q 000251 306 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL-----PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 380 (1784)
Q Consensus 306 ~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk-----~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGt 380 (1784)
..|++|.+.|++|+|+.||++||+++.|++|+||++.+-. +++.- -.-+-.+.++|+||.+. .+++.-...+
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s--~vv~~~~g~~ 156 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKS--VVVSVKRGNK 156 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcce--EEEEEccCCE
Confidence 3578999999999999999999999999999999987632 12111 11235678999999873 5666667778
Q ss_pred EEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCC
Q 000251 381 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 460 (1784)
Q Consensus 381 IrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~ 460 (1784)
+++|-+....-- .... .............|...+..+-...++.+|++++.|..|.+|+++ +
T Consensus 157 l~vyk~~K~~dG-~~~~-------~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk----------G 218 (420)
T KOG2096|consen 157 LCVYKLVKKTDG-SGSH-------HFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK----------G 218 (420)
T ss_pred EEEEEeeecccC-CCCc-------ccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC----------C
Confidence 999977533210 0000 000001111233466667778888889999999999999999996 3
Q ss_pred cceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccccccccc
Q 000251 461 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 540 (1784)
Q Consensus 461 ~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~ 540 (1784)
+.+..+......-+..+.+|+| ..|++++..-.|++|.+--.+ .+.+
T Consensus 219 q~L~~idtnq~~n~~aavSP~G--------------------------RFia~~gFTpDVkVwE~~f~k----dG~f--- 265 (420)
T KOG2096|consen 219 QLLQSIDTNQSSNYDAAVSPDG--------------------------RFIAVSGFTPDVKVWEPIFTK----DGTF--- 265 (420)
T ss_pred ceeeeeccccccccceeeCCCC--------------------------cEEEEecCCCCceEEEEEecc----Ccch---
Confidence 3455555555566677889987 788999999999999765211 0100
Q ss_pred ccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCC-------CceEEEE----ecCC
Q 000251 541 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD-------GSLVHSL----TGHT 609 (1784)
Q Consensus 541 ~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~t-------gklv~~L----~gH~ 609 (1784)
........+.+|...|..++||++...+++.+.||+++|||+.- .+.+++. ..-.
T Consensus 266 --------------qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag 331 (420)
T KOG2096|consen 266 --------------QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAG 331 (420)
T ss_pred --------------hhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcC
Confidence 01123445778999999999999999999999999999999742 2222222 1112
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-ccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000251 610 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 684 (1784)
Q Consensus 610 ~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~-~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sG 684 (1784)
+.-..++.+| .+..||. +....|+++..++|+....++ .|...|.+++|++||+++|++++ ..++++.-..|
T Consensus 332 ~~p~RL~lsP-~g~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd-r~vrv~~ntpg 404 (420)
T KOG2096|consen 332 SEPVRLELSP-SGDSLAV-SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD-RYVRVIRNTPG 404 (420)
T ss_pred CCceEEEeCC-CCcEEEe-ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc-eeeeeecCCCc
Confidence 2334799999 5555543 345579999999998877765 56778999999999999999876 67777764333
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.4e-20 Score=205.27 Aligned_cols=291 Identities=19% Similarity=0.300 Sum_probs=215.6
Q ss_pred EEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecC
Q 000251 273 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG 352 (1784)
Q Consensus 273 Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~g 352 (1784)
-.|+.|++-|.+||+|+.||.|.|||+.|...-+.+.+|..+|++++||+||+.|++++.|..|.+||+..|.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999888999999999999999999999999999999999999999998887
Q ss_pred CCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCC
Q 000251 353 HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 432 (1784)
Q Consensus 353 H~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~ 432 (1784)
..++|+.+.|+|...+ .+++.-.+..-.+-++..+. ... ++... ....+....+..|.+.|+
T Consensus 105 f~spv~~~q~hp~k~n--~~va~~~~~sp~vi~~s~~~--h~~-Lp~d~-------------d~dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRN--KCVATIMEESPVVIDFSDPK--HSV-LPKDD-------------DGDLNSSASHGVFDRRGK 166 (405)
T ss_pred ccCccceeeeccccCC--eEEEEEecCCcEEEEecCCc--eee-ccCCC-------------ccccccccccccccCCCC
Confidence 6799999999997653 34444444444444444321 111 11110 111122223447899999
Q ss_pred EEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCC-CCceEEEEccCcccccccccCCCCCCCCCccccccccCCeE
Q 000251 433 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE-NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 511 (1784)
Q Consensus 433 ~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~-~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~L 511 (1784)
+|++|...|.+.||+..+.+ .+..+.-.. ..|..+.|+-.| ..|
T Consensus 167 yIitGtsKGkllv~~a~t~e---------~vas~rits~~~IK~I~~s~~g--------------------------~~l 211 (405)
T KOG1273|consen 167 YIITGTSKGKLLVYDAETLE---------CVASFRITSVQAIKQIIVSRKG--------------------------RFL 211 (405)
T ss_pred EEEEecCcceEEEEecchhe---------eeeeeeechheeeeEEEEeccC--------------------------cEE
Confidence 99999999999999997633 343443333 677788888665 789
Q ss_pred EEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceecc--CCCCCeeEEEEcCCCCEEEEEe-cC
Q 000251 512 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL--PTPRGVNMIVWSLDNRFVLAAI-MD 588 (1784)
Q Consensus 512 VSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~--~h~~~VtsVafSPDG~~LaSgs-~D 588 (1784)
+.-+.|..|+.|++..-...+..+ ...+.+.+. -....-.+++||.+|.|+++|+ .-
T Consensus 212 iiNtsDRvIR~ye~~di~~~~r~~--------------------e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~a 271 (405)
T KOG1273|consen 212 IINTSDRVIRTYEISDIDDEGRDG--------------------EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARA 271 (405)
T ss_pred EEecCCceEEEEehhhhcccCccC--------------------CcChhHHHHHHHhhhhhhheeecCCccEEEeccccc
Confidence 999999999999887311000000 001111111 1223456789999999998876 44
Q ss_pred CeEEEEECCCCceEEEEecCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000251 589 CRICVWNAADGSLVHSLTGHT-ESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639 (1784)
Q Consensus 589 GsI~VWDl~tgklv~~L~gH~-~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 639 (1784)
..++||....|.+++.|.|.. .....+.|+| -.-++++- ..|.|+||..
T Consensus 272 HaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 272 HALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred eeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEEe
Confidence 679999999999999999987 5677899999 44455555 6789999986
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=220.45 Aligned_cols=240 Identities=19% Similarity=0.306 Sum_probs=199.8
Q ss_pred CCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECC-------
Q 000251 270 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP------- 342 (1784)
Q Consensus 270 ~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~------- 342 (1784)
.+.|.|++-+|+|.+|+.|+..|.|++|.+.+|.++..+.+|-..|+|+.|+.||.+|+||+.||.|.+|.+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred --CCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCC
Q 000251 343 --DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 420 (1784)
Q Consensus 343 --tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~ 420 (1784)
+-+++..+..|+-+|+.+...+.+.. .+|++++.|.+|++||+..|.++..+.+ ..
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~-~rl~TaS~D~t~k~wdlS~g~LLlti~f---------------------p~ 218 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTN-ARLYTASEDRTIKLWDLSLGVLLLTITF---------------------PS 218 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCcc-ceEEEecCCceEEEEEeccceeeEEEec---------------------CC
Confidence 34678899999999999999887533 3899999999999999999988887754 34
Q ss_pred ceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCc
Q 000251 421 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 500 (1784)
Q Consensus 421 ~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~ 500 (1784)
.+.+++.+|.+..+++|+.+|.|.+.++.+. .+....|..=.++..
T Consensus 219 si~av~lDpae~~~yiGt~~G~I~~~~~~~~---------------~~~~~~v~~k~~~~~------------------- 264 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYIGTEEGKIFQNLLFKL---------------SGQSAGVNQKGRHEE------------------- 264 (476)
T ss_pred cceeEEEcccccEEEecCCcceEEeeehhcC---------------Ccccccccccccccc-------------------
Confidence 5899999999999999999999999888431 111111110001100
Q ss_pred cccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCC--CeeEEEEcCC
Q 000251 501 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR--GVNMIVWSLD 578 (1784)
Q Consensus 501 ~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~--~VtsVafSPD 578 (1784)
+.....+.+|.. .|+|++++-|
T Consensus 265 --------------------------------------------------------~t~~~~~~Gh~~~~~ITcLais~D 288 (476)
T KOG0646|consen 265 --------------------------------------------------------NTQINVLVGHENESAITCLAISTD 288 (476)
T ss_pred --------------------------------------------------------cceeeeeccccCCcceeEEEEecC
Confidence 112233345555 8999999999
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCC
Q 000251 579 NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 621 (1784)
Q Consensus 579 G~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd 621 (1784)
|.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|.-
T Consensus 289 gtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 289 GTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred ccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 9999999999999999999999999998778899999997743
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-20 Score=215.72 Aligned_cols=263 Identities=22% Similarity=0.328 Sum_probs=207.1
Q ss_pred ccCCCCEEEEEECCCC-CEEEEEcCCcEEEEEECCCC----------eEEEEEecCCCCeEEEEEcCCCC-EEEEEeCCC
Q 000251 267 RGHRNAVYCAIFDRSG-RYVITGSDDRLVKIWSMETA----------YCLASCRGHEGDITDLAVSSNNA-LVASASNDC 334 (1784)
Q Consensus 267 ~GH~~~Vt~VaFSPDG-~~LATGS~DGtIkIWDl~Tg----------k~l~tL~gH~~~VtsLafSpDg~-lLASGS~DG 334 (1784)
--|.+.|+.+.+-|.. ..|||++..+.|.|||..+- .+-.+|.||...-++|+|++... +|++|+.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 3599999999999966 46677888999999998542 12237889999889999998544 899999999
Q ss_pred EEEEEECCCC-------CeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCC
Q 000251 335 IIRVWRLPDG-------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 407 (1784)
Q Consensus 335 tIrVWDl~tg-------k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~ 407 (1784)
+|++||+... .+...+.+|...|..++|++... .+|++++.|+.+.|||++++..
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~--~lF~sv~dd~~L~iwD~R~~~~---------------- 262 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE--DLFGSVGDDGKLMIWDTRSNTS---------------- 262 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccch--hhheeecCCCeEEEEEcCCCCC----------------
Confidence 9999999643 24567889999999999999765 3899999999999999996411
Q ss_pred CCCCCCCCCCCCCceEEEEECC-CCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccc
Q 000251 408 NMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 486 (1784)
Q Consensus 408 ~~~~~~s~~~h~~~V~sLafSp-dG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~ 486 (1784)
.+......|...|+|++|+| ++..||+|+.|++|++||+++. ...+..+.+|...|..|.|+|..
T Consensus 263 --~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL--------~~~lh~~e~H~dev~~V~WSPh~---- 328 (422)
T KOG0264|consen 263 --KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL--------NKPLHTFEGHEDEVFQVEWSPHN---- 328 (422)
T ss_pred --CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc--------ccCceeccCCCcceEEEEeCCCC----
Confidence 11223456899999999999 6678999999999999999864 34788999999999999999985
Q ss_pred ccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCC
Q 000251 487 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 566 (1784)
Q Consensus 487 ~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 566 (1784)
...|++++.|+.+.|||+..-... ..+..........+...-+|
T Consensus 329 ---------------------etvLASSg~D~rl~vWDls~ig~e---------------q~~eda~dgppEllF~HgGH 372 (422)
T KOG0264|consen 329 ---------------------ETVLASSGTDRRLNVWDLSRIGEE---------------QSPEDAEDGPPELLFIHGGH 372 (422)
T ss_pred ---------------------CceeEecccCCcEEEEeccccccc---------------cChhhhccCCcceeEEecCc
Confidence 368999999999999999841100 00001111112333455678
Q ss_pred CCCeeEEEEcCCCCEE-EEEecCCeEEEEECC
Q 000251 567 PRGVNMIVWSLDNRFV-LAAIMDCRICVWNAA 597 (1784)
Q Consensus 567 ~~~VtsVafSPDG~~L-aSgs~DGsI~VWDl~ 597 (1784)
...|..+.|+|+..++ ++.+.|+.+.||...
T Consensus 373 ~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 373 TAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 8999999999998865 568899999999975
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-20 Score=216.00 Aligned_cols=279 Identities=16% Similarity=0.294 Sum_probs=229.5
Q ss_pred ccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCC---eEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEC
Q 000251 267 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---YCLASCR--GHEGDITDLAVSSNNALVASASNDCIIRVWRL 341 (1784)
Q Consensus 267 ~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tg---k~l~tL~--gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl 341 (1784)
..|..-|.++++|...+++.||+. |.|+|||+..- ..+..|. .....|+++.+.|||+.|++|+.-.++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 469999999999999999999986 78999999532 2333333 34678999999999999999999999999999
Q ss_pred CCCCe--eEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000251 342 PDGLP--ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 419 (1784)
Q Consensus 342 ~tgk~--i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~ 419 (1784)
....+ ...+....-..++++.+||.+ ..++++.||.|.|||+.+...+..+ .+|.
T Consensus 495 AapTprikaeltssapaCyALa~spDak---vcFsccsdGnI~vwDLhnq~~Vrqf--------------------qGht 551 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAK---VCFSCCSDGNIAVWDLHNQTLVRQF--------------------QGHT 551 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccc---eeeeeccCCcEEEEEcccceeeecc--------------------cCCC
Confidence 76543 334444445678899999987 8899999999999999877655544 5789
Q ss_pred CceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCC--CCCceEEEEccCcccccccccCCCCCCC
Q 000251 420 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH--ENDVNYVQFSGCAVASRFSLADSSKEDS 497 (1784)
Q Consensus 420 ~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH--~~~V~sLafSpdglas~~~~~~s~~~~~ 497 (1784)
..+.||.+++||..|.+|+-|.+|+.||++.+.. +..| ...|.++.++|.+
T Consensus 552 DGascIdis~dGtklWTGGlDntvRcWDlregrq------------lqqhdF~SQIfSLg~cP~~--------------- 604 (705)
T KOG0639|consen 552 DGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ------------LQQHDFSSQIFSLGYCPTG--------------- 604 (705)
T ss_pred CCceeEEecCCCceeecCCCccceeehhhhhhhh------------hhhhhhhhhheecccCCCc---------------
Confidence 9999999999999999999999999999976432 2223 4678888888886
Q ss_pred CCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcC
Q 000251 498 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL 577 (1784)
Q Consensus 498 ~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP 577 (1784)
++|+.|-..+.+-|..... .....+..|...|.++.|++
T Consensus 605 -----------dWlavGMens~vevlh~sk------------------------------p~kyqlhlheScVLSlKFa~ 643 (705)
T KOG0639|consen 605 -----------DWLAVGMENSNVEVLHTSK------------------------------PEKYQLHLHESCVLSLKFAY 643 (705)
T ss_pred -----------cceeeecccCcEEEEecCC------------------------------ccceeecccccEEEEEEecc
Confidence 7999999999888775542 23445566889999999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000251 578 DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639 (1784)
Q Consensus 578 DG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 639 (1784)
.|+++++.+.|..+..|...-|..+...+. ...|.++.+|. +.++|+||+.|....||.+
T Consensus 644 cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 644 CGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCceeeecCchhhhhhccCccccceeeccc-cCcceeeeecc-CceEEEecCCCcceEEEEE
Confidence 999999999999999999999988877763 56689999988 7789999999998888865
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-20 Score=215.82 Aligned_cols=256 Identities=20% Similarity=0.316 Sum_probs=210.6
Q ss_pred cCCCCeEEEEEcCCCC-EEEEEeCCCEEEEEECCCC----------CeeEEecCCCCceEEEEecCCCCccEEEEEEeCC
Q 000251 310 GHEGDITDLAVSSNNA-LVASASNDCIIRVWRLPDG----------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD 378 (1784)
Q Consensus 310 gH~~~VtsLafSpDg~-lLASGS~DGtIrVWDl~tg----------k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~D 378 (1784)
.|.+.|..+..-|... +||+++..+.|.|||.... .+-..|.+|...-++|+|++... ..|++++.|
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~--g~Lls~~~d 199 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQE--GTLLSGSDD 199 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccc--eeEeeccCC
Confidence 5999999999999765 6677788899999997532 22337889999888999999865 389999999
Q ss_pred CcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECC-CCCEEEEeeCCceEEEEcCCCCCCCCCC
Q 000251 379 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSD 457 (1784)
Q Consensus 379 GtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSp-dG~~LasGs~DG~IrVWDl~tg~~~~s~ 457 (1784)
++|++||+....... ....+.....+|...|..++|++ +..+|++++.|+.+.|||+++.
T Consensus 200 ~~i~lwdi~~~~~~~-------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~------ 260 (422)
T KOG0264|consen 200 HTICLWDINAESKED-------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN------ 260 (422)
T ss_pred CcEEEEeccccccCC-------------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC------
Confidence 999999998654321 11233445667999999999999 5578899999999999999852
Q ss_pred CCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccc
Q 000251 458 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 537 (1784)
Q Consensus 458 ~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w 537 (1784)
..+......+|.+.|+|++|+|-. ...||+||.|++|.+||+++..
T Consensus 261 -~~~~~~~~~ah~~~vn~~~fnp~~-------------------------~~ilAT~S~D~tV~LwDlRnL~-------- 306 (422)
T KOG0264|consen 261 -TSKPSHSVKAHSAEVNCVAFNPFN-------------------------EFILATGSADKTVALWDLRNLN-------- 306 (422)
T ss_pred -CCCCcccccccCCceeEEEeCCCC-------------------------CceEEeccCCCcEEEeechhcc--------
Confidence 134556678999999999999865 4689999999999999999622
Q ss_pred cccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC-EEEEEecCCeEEEEECCC--------------CceE
Q 000251 538 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWNAAD--------------GSLV 602 (1784)
Q Consensus 538 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~-~LaSgs~DGsI~VWDl~t--------------gklv 602 (1784)
.+...+.+|...|..|.|||... .||+++.|+.+.|||+.. .+++
T Consensus 307 --------------------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEll 366 (422)
T KOG0264|consen 307 --------------------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELL 366 (422)
T ss_pred --------------------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCccee
Confidence 35667888999999999999765 567888999999999864 2345
Q ss_pred EEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000251 603 HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 640 (1784)
Q Consensus 603 ~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 640 (1784)
..-.||...|..+.|+|..+..++|++.|+.+.||...
T Consensus 367 F~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 367 FIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 67789999999999999999999999999999999985
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-17 Score=196.03 Aligned_cols=333 Identities=26% Similarity=0.502 Sum_probs=259.4
Q ss_pred EEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCe-EEEEEecCCC-CeEEEEE-cCCCC-EEEEEeC-CCEEEE
Q 000251 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY-CLASCRGHEG-DITDLAV-SSNNA-LVASASN-DCIIRV 338 (1784)
Q Consensus 264 ~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk-~l~tL~gH~~-~VtsLaf-SpDg~-lLASGS~-DGtIrV 338 (1784)
..+.+|...|.++.|.+.+..++.++.|+.|.+|+...+. .+..+.++.. .+..+.+ ++++. +++..+. |+.+.+
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 3577899999999999999999999999999999999887 7777776443 7888888 88887 5555444 999999
Q ss_pred EECCC-CCeeEEecCCCCceEEEEecCCCCccEEEEEEeC-CCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCC
Q 000251 339 WRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD-DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 416 (1784)
Q Consensus 339 WDl~t-gk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~-DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~ 416 (1784)
|++.. ......+..|...|.+++|+|++. .+++++. |+.+++|++..+.....+ .
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~ 195 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGK---LLASGSSLDGTIKLWDLRTGKPLSTL--------------------A 195 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCC---EEEecCCCCCceEEEEcCCCceEEee--------------------c
Confidence 99988 788888999999999999999987 7777775 999999999875444333 2
Q ss_pred CCCCceEEEEECCCCC-EEEEeeCCceEEEEcCCCCCCCCCCCCCccee-eecCCCCCceEEEEccCcccccccccCCCC
Q 000251 417 PQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEID-VLSGHENDVNYVQFSGCAVASRFSLADSSK 494 (1784)
Q Consensus 417 ~h~~~V~sLafSpdG~-~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~-~l~gH~~~V~sLafSpdglas~~~~~~s~~ 494 (1784)
.|...|.+++|+|++. .+++++.|+.|++||... ...+. .+.+|...+ ...|++++
T Consensus 196 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~---------~~~~~~~~~~~~~~~-~~~~~~~~------------ 253 (466)
T COG2319 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST---------GKLLRSTLSGHSDSV-VSSFSPDG------------ 253 (466)
T ss_pred cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC---------CcEEeeecCCCCcce-eEeECCCC------------
Confidence 3778899999999998 555558999999997752 33444 577787775 44777764
Q ss_pred CCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEE
Q 000251 495 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 574 (1784)
Q Consensus 495 ~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 574 (1784)
..+++++.|+.+++|++..... ....+..|...|.++.
T Consensus 254 --------------~~~~~~~~d~~~~~~~~~~~~~----------------------------~~~~~~~~~~~v~~~~ 291 (466)
T COG2319 254 --------------SLLASGSSDGTIRLWDLRSSSS----------------------------LLRTLSGHSSSVLSVA 291 (466)
T ss_pred --------------CEEEEecCCCcEEEeeecCCCc----------------------------EEEEEecCCccEEEEE
Confidence 4788999999999999885221 1111145678899999
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCceEEEEe--cCCCCeEEEEEecCC-CcEEEEEeCCCcEEEEeCCCCceEEEEecc
Q 000251 575 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GHTESTYVLDVHPFN-PRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 651 (1784)
Q Consensus 575 fSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~--gH~~~VtsLafSPdd-~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~ 651 (1784)
|+|++..+++++.|+.+.+|+..+........ .|...|..+.| +.+ ..++.++..|+.+.+|++.......... .
T Consensus 292 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~ 369 (466)
T COG2319 292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE-G 369 (466)
T ss_pred ECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCceeEEec-C
Confidence 99999999999999999999999888777776 88888999999 534 3444444688999999998887333333 2
Q ss_pred CcceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCcc
Q 000251 652 RFRLVDGKFSPDGASIIL-SDDVGQLYILNTGQGES 686 (1784)
Q Consensus 652 ~~~ItslafSPDGk~LAs-gs~DG~I~IWdl~sGe~ 686 (1784)
...+..+.+++ ...++. +..++.+.+|+......
T Consensus 370 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
T COG2319 370 HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSL 404 (466)
T ss_pred CceEEEEEECC-CCCEEEEecCCCceEEEecccCee
Confidence 22388899999 544444 68899999999876544
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=218.05 Aligned_cols=307 Identities=20% Similarity=0.285 Sum_probs=213.0
Q ss_pred EEECC---CCCEEEEEcCCcEEEEEECCCCeE------EEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCe
Q 000251 276 AIFDR---SGRYVITGSDDRLVKIWSMETAYC------LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP 346 (1784)
Q Consensus 276 VaFSP---DG~~LATGS~DGtIkIWDl~Tgk~------l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~ 346 (1784)
+.|++ ....||.+.+||.|.++|...... +.....|.+.|.++.|.|....|++++.|.+|++||+.++++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 45654 346889999999999999865432 244557999999999999667899999999999999999988
Q ss_pred eEE--ecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccc--e----eec-----CCCCCcccCCCCCCCC
Q 000251 347 ISV--LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSP--R----IYI-----PRPSDAVAGRNMAPSS 413 (1784)
Q Consensus 347 i~~--L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~--~----i~l-----~~~~~~~~g~~~~~~~ 413 (1784)
+.. +.||.+.|.+++|.|.+. ..|++|+.||.|.|||++...... . ++. +.+..... ....
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~--~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~----kr~~ 208 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNP--AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK----KRIR 208 (720)
T ss_pred ecceeecccccccchhhhccCCC--cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh----cccc
Confidence 776 899999999999999876 479999999999999998554110 0 000 00000000 0011
Q ss_pred CCCCCCCceEE---EEECCCCCEEEEeeC-CceEEEEcCCCCCCCCCCCCCcceeeecCC---CCCceEEEEccCccccc
Q 000251 414 SAGPQSHQIFC---CAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGH---ENDVNYVQFSGCAVASR 486 (1784)
Q Consensus 414 s~~~h~~~V~s---LafSpdG~~LasGs~-DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH---~~~V~sLafSpdglas~ 486 (1784)
....+...|.+ +.+..|...||+++. |+.|+|||+++........+.. ...+..| ...+.++.....|
T Consensus 209 k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~-~~~~~t~skrs~G~~nL~lDssG---- 283 (720)
T KOG0321|consen 209 KWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG-SDKYPTHSKRSVGQVNLILDSSG---- 283 (720)
T ss_pred ccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCc-ccCccCcccceeeeEEEEecCCC----
Confidence 12233444444 445567788888877 9999999999866543333322 1222223 2234444444333
Q ss_pred ccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCC
Q 000251 487 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 566 (1784)
Q Consensus 487 ~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 566 (1784)
.+|++.+.|+.|.+|++.+... .+...+.++
T Consensus 284 ----------------------t~L~AsCtD~sIy~ynm~s~s~---------------------------sP~~~~sg~ 314 (720)
T KOG0321|consen 284 ----------------------TYLFASCTDNSIYFYNMRSLSI---------------------------SPVAEFSGK 314 (720)
T ss_pred ----------------------CeEEEEecCCcEEEEeccccCc---------------------------CchhhccCc
Confidence 4555555599999999986331 111111111
Q ss_pred CCC--eeEEEEcCCCCEEEEEecCCeEEEEECCCCc-eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 000251 567 PRG--VNMIVWSLDNRFVLAAIMDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 642 (1784)
Q Consensus 567 ~~~--VtsVafSPDG~~LaSgs~DGsI~VWDl~tgk-lv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG 642 (1784)
... -..-..+||+.+|++|+.|...++|.+.+.+ ....+.||.-.|++++|.|..-.=+++++.|..++||++..+
T Consensus 315 ~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 315 LNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 111 1223568999999999999999999998865 456778999999999999865566778899999999999655
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-20 Score=200.44 Aligned_cols=264 Identities=19% Similarity=0.244 Sum_probs=203.8
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCC---CeeEEecCCCCceEEEEecC--CCCccEEEEEEeCCCcEEE
Q 000251 309 RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG---LPISVLRGHTAAVTAIAFSP--RPGSVYQLLSSSDDGTCRI 383 (1784)
Q Consensus 309 ~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg---k~i~~L~gH~~~VtsLafSP--dg~~~~~LaSgs~DGtIrI 383 (1784)
..|...|.++...-.|++||+++.|++|+|+.+... +++..|.||.++|+.++|.. .|. +|++++.||.|.|
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~---iLAScsYDgkVIi 84 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT---ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc---EeeEeecCceEEE
Confidence 468888999888889999999999999999998754 56889999999999999976 454 9999999999999
Q ss_pred EecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCC--CCEEEEeeCCceEEEEcCCCCCCCCCCCCCc
Q 000251 384 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN--GTVFVTGSSDTLARVWNACKPNTDDSDQPNH 461 (1784)
Q Consensus 384 WDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpd--G~~LasGs~DG~IrVWDl~tg~~~~s~~~~~ 461 (1784)
|.-.+++..+.. ....|...|++++|.|. |-.|++++.||.|.|.+.+.. ....
T Consensus 85 Wke~~g~w~k~~------------------e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~------g~w~ 140 (299)
T KOG1332|consen 85 WKEENGRWTKAY------------------EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS------GGWT 140 (299)
T ss_pred EecCCCchhhhh------------------hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC------CCcc
Confidence 998888654332 23458889999999995 578999999999999998652 1122
Q ss_pred ceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccc
Q 000251 462 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 541 (1784)
Q Consensus 462 ~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~ 541 (1784)
.......|.-.|++++|.|.... |.+. +
T Consensus 141 t~ki~~aH~~GvnsVswapa~~~---------------------------------g~~~--~----------------- 168 (299)
T KOG1332|consen 141 TSKIVFAHEIGVNSVSWAPASAP---------------------------------GSLV--D----------------- 168 (299)
T ss_pred chhhhhccccccceeeecCcCCC---------------------------------cccc--c-----------------
Confidence 33456789999999999986310 0000 0
Q ss_pred cccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCc--eEEEEecCCCCeEEEEEec
Q 000251 542 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGS--LVHSLTGHTESTYVLDVHP 619 (1784)
Q Consensus 542 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgk--lv~~L~gH~~~VtsLafSP 619 (1784)
+. .. ..-+.|++|+.|..|+||+..++. +.++|.+|.+.|..++|.|
T Consensus 169 ------------------------~~-~~------~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP 217 (299)
T KOG1332|consen 169 ------------------------QG-PA------AKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAP 217 (299)
T ss_pred ------------------------cC-cc------cccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhcc
Confidence 00 00 002467888888888888887753 3456899999999999999
Q ss_pred CCC---cEEEEEeCCCcEEEEeCCCC--c-eEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000251 620 FNP---RIAMSAGYDGKTIVWDIWEG--I-PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 682 (1784)
Q Consensus 620 dd~---~lLaSgs~DG~IrIWDl~tG--~-~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~ 682 (1784)
..+ ..||+++.||+|.||..... . ....+......+..+.||..|..|++++.|..|.+|.-.
T Consensus 218 ~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 218 SVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 643 68999999999999987522 1 122233345678999999999999999999999999853
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-19 Score=198.37 Aligned_cols=296 Identities=20% Similarity=0.305 Sum_probs=213.0
Q ss_pred ccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECC----CCeEEEEEecCCCCeEEEEEcC--CCCEEEEEeCCCEEEEEE
Q 000251 267 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME----TAYCLASCRGHEGDITDLAVSS--NNALVASASNDCIIRVWR 340 (1784)
Q Consensus 267 ~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~----Tgk~l~tL~gH~~~VtsLafSp--Dg~lLASGS~DGtIrVWD 340 (1784)
.+|.+-|.|+.|++.|+++|||+.|++|+|||.. +..+....+.|.+.|..|.|.+ -|+.+|+++.|++|.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 5799999999999999999999999999999963 3356667889999999999976 589999999999999997
Q ss_pred CC---------CCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCC
Q 000251 341 LP---------DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 411 (1784)
Q Consensus 341 l~---------tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~ 411 (1784)
-. ......++....+.|+.|.|.|..-+ ..|++++.||+|+||+.-..-.+....+.......
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlG-LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~------- 161 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLG-LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV------- 161 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcc-eEEEEeccCcEEEEEecCCccccccchhhhhhhhc-------
Confidence 42 11234566677889999999998644 38999999999999987655444433322211111
Q ss_pred CCCCCCCCCceEEEEECCC---CCEEEEeeCC-----ceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcc
Q 000251 412 SSSAGPQSHQIFCCAFNAN---GTVFVTGSSD-----TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 483 (1784)
Q Consensus 412 ~~s~~~h~~~V~sLafSpd---G~~LasGs~D-----G~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdgl 483 (1784)
......+.....|+.|+|. ..+||+|+.+ +.+.||..... ......+..+.+|..+|+.|+|.|+.-
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~-----~rKw~kva~L~d~~dpI~di~wAPn~G 236 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN-----GRKWLKVAELPDHTDPIRDISWAPNIG 236 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCC-----cceeeeehhcCCCCCcceeeeeccccC
Confidence 1122335566789999974 3578888866 47888877432 233566778889999999999999741
Q ss_pred cccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceec
Q 000251 484 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 563 (1784)
Q Consensus 484 as~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l 563 (1784)
. .-..|++++.|| |+||.+........ .. ... .+..........+..+
T Consensus 237 r----------------------~y~~lAvA~kDg-v~I~~v~~~~s~i~----~e--e~~---~~~~~~~l~v~~vs~~ 284 (361)
T KOG2445|consen 237 R----------------------SYHLLAVATKDG-VRIFKVKVARSAIE----EE--EVL---APDLMTDLPVEKVSEL 284 (361)
T ss_pred C----------------------ceeeEEEeecCc-EEEEEEeeccchhh----hh--ccc---CCCCccccceEEeeec
Confidence 1 125899999999 99999885321100 00 000 0000011122334456
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCC---CceEEEEec
Q 000251 564 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD---GSLVHSLTG 607 (1784)
Q Consensus 564 ~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~t---gklv~~L~g 607 (1784)
..|.+.|..+.|.-.|..|++.+.||.|++|...- .++...+..
T Consensus 285 ~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 285 DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKA 331 (361)
T ss_pred cCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEec
Confidence 78999999999999999999999999999997643 344545543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-19 Score=212.56 Aligned_cols=286 Identities=16% Similarity=0.244 Sum_probs=220.7
Q ss_pred EEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC--EEEEEeCCCEEEEE
Q 000251 262 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA--LVASASNDCIIRVW 339 (1784)
Q Consensus 262 ~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~--lLASGS~DGtIrVW 339 (1784)
+...++||++.|.||..+|.|.+||+|++||+|+||.+.||+|++++. ..+.|.||+|+|.+. .||++-.. .+.|-
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-CVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-ceEEe
Confidence 345678999999999999999999999999999999999999999987 456899999999766 45544333 24443
Q ss_pred ECCCC-------------------------------------CeeEEecCCCCceEEEEecCCCCccEEEEEEeCC---C
Q 000251 340 RLPDG-------------------------------------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD---G 379 (1784)
Q Consensus 340 Dl~tg-------------------------------------k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~D---G 379 (1784)
+..-| .-+...-.|...|..|.|+..|. ||++...+ .
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD---YlatV~~~~~~~ 546 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD---YLATVMPDSGNK 546 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc---eEEEeccCCCcc
Confidence 32111 01223335788899999999998 88877654 4
Q ss_pred cEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCC
Q 000251 380 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQP 459 (1784)
Q Consensus 380 tIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~ 459 (1784)
.|.|.++........ +....+.|.++.|+|...+|++++. ..|+|||+..
T Consensus 547 ~VliHQLSK~~sQ~P--------------------F~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~k--------- 596 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQSP--------------------FRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSK--------- 596 (733)
T ss_pred eEEEEecccccccCc--------------------hhhcCCceeEEEecCCCceEEEEec-cceEEEehhH---------
Confidence 578888765542211 2234667999999999988888875 5699999954
Q ss_pred CcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccc
Q 000251 460 NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQ 539 (1784)
Q Consensus 460 ~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~ 539 (1784)
...+..+......|..++++|.| +.|+.|+.|+.+..+|+.-
T Consensus 597 qelvKkL~tg~kwiS~msihp~G--------------------------Dnli~gs~d~k~~WfDldl------------ 638 (733)
T KOG0650|consen 597 QELVKKLLTGSKWISSMSIHPNG--------------------------DNLILGSYDKKMCWFDLDL------------ 638 (733)
T ss_pred HHHHHHHhcCCeeeeeeeecCCC--------------------------CeEEEecCCCeeEEEEccc------------
Confidence 33445555666788999999987 7999999999999999873
Q ss_pred cccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECC-------CC--ceEEEEecCCC
Q 000251 540 AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAA-------DG--SLVHSLTGHTE 610 (1784)
Q Consensus 540 ~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~-------tg--klv~~L~gH~~ 610 (1784)
...+.+++..|...+++|+|++.-.++++|+.||++.|+--. +. -++..|.||..
T Consensus 639 ----------------sskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~ 702 (733)
T KOG0650|consen 639 ----------------SSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK 702 (733)
T ss_pred ----------------CcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence 234556677789999999999999999999999999998532 11 24567888876
Q ss_pred C----eEEEEEecCCCcEEEEEeCCCcEEEE
Q 000251 611 S----TYVLDVHPFNPRIAMSAGYDGKTIVW 637 (1784)
Q Consensus 611 ~----VtsLafSPdd~~lLaSgs~DG~IrIW 637 (1784)
. |..+.||| ..-+|+++|.||+|++|
T Consensus 703 ~~~~gVLd~~wHP-~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 703 TNDLGVLDTIWHP-RQPWLFSAGADGTIRLF 732 (733)
T ss_pred ecccceEeecccC-CCceEEecCCCceEEee
Confidence 5 88899999 55677799999999998
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-19 Score=223.97 Aligned_cols=303 Identities=15% Similarity=0.193 Sum_probs=206.6
Q ss_pred EEec-CCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEE
Q 000251 348 SVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 426 (1784)
Q Consensus 348 ~~L~-gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLa 426 (1784)
+.+. .|.+.|+++.|++||+ |||+||.||.|+||.+..... .............. ......+..+.
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGK---yLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~---------~~~~s~~~p~~ 326 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGK---YLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFE---------YNANSQIEPST 326 (712)
T ss_pred eccccccCCcEEEEEeCCCCc---eeeecCCCceEEEEEEeccch-hcccccccchhhhh---------hhhccccCccc
Confidence 4455 8999999999999998 999999999999999875332 11100000000000 00000000000
Q ss_pred ECC-----CCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCcc
Q 000251 427 FNA-----NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 501 (1784)
Q Consensus 427 fSp-----dG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~ 501 (1784)
.++ .....-.+..... .+...... .-..+++..+.||.+.|..|.|+.+
T Consensus 327 s~~~~~~~~~s~~~~~~~s~~-~~~p~~~f-----~f~ekP~~ef~GHt~DILDlSWSKn-------------------- 380 (712)
T KOG0283|consen 327 SSEEKISSRTSSSRKGSQSPC-VLLPLKAF-----VFSEKPFCEFKGHTADILDLSWSKN-------------------- 380 (712)
T ss_pred cccccccccccccccccCCcc-ccCCCccc-----cccccchhhhhccchhheecccccC--------------------
Confidence 111 0001111111222 11211110 1124567889999999999999976
Q ss_pred ccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcC-CCC
Q 000251 502 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-DNR 580 (1784)
Q Consensus 502 ~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP-DG~ 580 (1784)
++|++++.|.+|++|++.... +..+..|..-|+||+|+| |.+
T Consensus 381 -------~fLLSSSMDKTVRLWh~~~~~------------------------------CL~~F~HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 381 -------NFLLSSSMDKTVRLWHPGRKE------------------------------CLKVFSHNDFVTCVAFNPVDDR 423 (712)
T ss_pred -------CeeEeccccccEEeecCCCcc------------------------------eeeEEecCCeeEEEEecccCCC
Confidence 499999999999999988532 345567999999999999 789
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEecc--------C
Q 000251 581 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS--------R 652 (1784)
Q Consensus 581 ~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~--------~ 652 (1784)
|+++|+-||.|+||++...+.+.-..-+ .-|++++|.| +|.+++.|+.+|.+++|+....+.+..+..+ +
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred cEeecccccceEEeecCcCeeEeehhhh-hhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 9999999999999999888777665544 7799999999 6888999999999999999877766555421 2
Q ss_pred cceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccccccccceeecCCCcceEEccCCceeecccccccCcCCCCCcccC
Q 000251 653 FRLVDGKFSPDGA-SIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCD 731 (1784)
Q Consensus 653 ~~ItslafSPDGk-~LAsgs~DG~I~IWdl~sGe~~~~~~~~~~fs~D~r~Lv~d~~g~vld~~tql~phl~~l~~~L~D 731 (1784)
..|+.+.|.|... .|++++.|..|+|+|..+-+.+..++...
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~------------------------------------- 544 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR------------------------------------- 544 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc-------------------------------------
Confidence 2799999987543 58888999999999986544433221000
Q ss_pred CCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeecCCCc
Q 000251 732 SAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADL 784 (1784)
Q Consensus 732 ~~~~p~p~~~Q~l~~~rr~~v~~iAfSPDG~~LAvg~d~s~~~~v~lw~l~~~ 784 (1784)
.........|+.||++|.++ +.+..|.+|.+...
T Consensus 545 ----------------n~~SQ~~Asfs~Dgk~IVs~---seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 545 ----------------NTSSQISASFSSDGKHIVSA---SEDSWVYIWKNDSF 578 (712)
T ss_pred ----------------cCCcceeeeEccCCCEEEEe---ecCceEEEEeCCCC
Confidence 00012245689999999999 78889999997443
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-19 Score=196.77 Aligned_cols=302 Identities=21% Similarity=0.334 Sum_probs=228.6
Q ss_pred EccCCCCEEEEEECC-CCCEEEEEcCCcEEEEEECCCCe-------EEEE--------EecCCCCeEEEEEcC-CCCEEE
Q 000251 266 VRGHRNAVYCAIFDR-SGRYVITGSDDRLVKIWSMETAY-------CLAS--------CRGHEGDITDLAVSS-NNALVA 328 (1784)
Q Consensus 266 L~GH~~~Vt~VaFSP-DG~~LATGS~DGtIkIWDl~Tgk-------~l~t--------L~gH~~~VtsLafSp-Dg~lLA 328 (1784)
.+-|.+.|+++.+.+ .|+++++|+.||.|.|||++... ..+. -.+|.-.|.++.|-| |..++.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 456899999999998 58999999999999999997543 1111 126888999999998 666888
Q ss_pred EEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCC
Q 000251 329 SASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN 408 (1784)
Q Consensus 329 SGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~ 408 (1784)
+++.|.+++|||..+-+....|. -.+.|++-+++|-.....++++|..|-.|++-|+..|.+...+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L------------- 184 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL------------- 184 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee-------------
Confidence 99999999999999988777776 5688999999997655557888899999999999999865554
Q ss_pred CCCCCCCCCCCCceEEEEECCCCC-EEEEeeCCceEEEEcCCCCC-CC---CCC--CCCcceeeecCCCCCceEEEEccC
Q 000251 409 MAPSSSAGPQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPN-TD---DSD--QPNHEIDVLSGHENDVNYVQFSGC 481 (1784)
Q Consensus 409 ~~~~~s~~~h~~~V~sLafSpdG~-~LasGs~DG~IrVWDl~tg~-~~---~s~--~~~~~i~~l~gH~~~V~sLafSpd 481 (1784)
.+|...|.++.|+|... .|++|+.||.|++||++... +. ... .....+..-..|.+.|+.++|..+
T Consensus 185 -------sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd 257 (397)
T KOG4283|consen 185 -------SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD 257 (397)
T ss_pred -------ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc
Confidence 47899999999999776 57889999999999998642 10 000 111222345688999999999988
Q ss_pred cccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCce
Q 000251 482 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 561 (1784)
Q Consensus 482 glas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~ 561 (1784)
+ .++++++.|..+++|+..+++..... ..++.
T Consensus 258 ~--------------------------~~l~~~gtd~r~r~wn~~~G~ntl~~----------------------~g~~~ 289 (397)
T KOG4283|consen 258 A--------------------------RYLASCGTDDRIRVWNMESGRNTLRE----------------------FGPII 289 (397)
T ss_pred c--------------------------hhhhhccCccceEEeecccCcccccc----------------------ccccc
Confidence 7 68999999999999999875521100 01111
Q ss_pred eccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000251 562 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639 (1784)
Q Consensus 562 ~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 639 (1784)
......-.+. +. +.+...++.--.++.+.++++-.|..++.+.+|...|.|.++-| +=....+|..|+.|..|-.
T Consensus 290 ~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~-~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 290 HNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRP-DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecC-chhhhhccccCCccccccc
Confidence 1111111122 22 33444454445568999999999999999999988899999988 4455678999999999976
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-19 Score=206.68 Aligned_cols=307 Identities=20% Similarity=0.263 Sum_probs=234.9
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEcCCC--CEEEEEeCCCEEEEEECCCC----CeeEEecCCCCceEEEEecCCCCccE
Q 000251 297 WSMETAYCLASCRGHEGDITDLAVSSNN--ALVASASNDCIIRVWRLPDG----LPISVLRGHTAAVTAIAFSPRPGSVY 370 (1784)
Q Consensus 297 WDl~Tgk~l~tL~gH~~~VtsLafSpDg--~lLASGS~DGtIrVWDl~tg----k~i~~L~gH~~~VtsLafSPdg~~~~ 370 (1784)
.|+.+-.....++.+.+.|++++|+|.. +++|+|..-|+|-+||+.+. .-+..+..|.++|.+|.|+|.+..
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s-- 248 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS-- 248 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh--
Confidence 4444455566677789999999999954 58899999999999999532 335677889999999999998753
Q ss_pred EEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCC
Q 000251 371 QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 450 (1784)
Q Consensus 371 ~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~t 450 (1784)
.+++.+.||+|++-|++.+.....+.+ ......+..+.|+.+...++.|..=|...+||+++
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~------------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~ 310 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSL------------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT 310 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhc------------------CccceeeeeccccCCCccEEEeecccceEEEEeec
Confidence 799999999999999987754332211 11234467788888887788888778999999987
Q ss_pred CCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCC
Q 000251 451 PNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS 530 (1784)
Q Consensus 451 g~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~ 530 (1784)
+. .....+.-|...|..|+++|.. +..|+|++.|++++|||++....
T Consensus 311 ~~--------s~~~~~~lh~kKI~sv~~NP~~-------------------------p~~laT~s~D~T~kIWD~R~l~~ 357 (498)
T KOG4328|consen 311 DG--------SEYENLRLHKKKITSVALNPVC-------------------------PWFLATASLDQTAKIWDLRQLRG 357 (498)
T ss_pred CC--------ccchhhhhhhcccceeecCCCC-------------------------chheeecccCcceeeeehhhhcC
Confidence 53 3455667788899999999975 46899999999999999995221
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECC----CCceEEEEe
Q 000251 531 HPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAA----DGSLVHSLT 606 (1784)
Q Consensus 531 ~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~----tgklv~~L~ 606 (1784)
. ..+......|...|.+..|||.|..|+|.+.|..|+|||.. .-.+..++.
T Consensus 358 K-------------------------~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 358 K-------------------------ASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred C-------------------------CCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence 0 11345567899999999999999999999999999999983 333333333
Q ss_pred cCCC------CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCc-ceEEE-EEcCCCCEEE-EEeCCCeEE
Q 000251 607 GHTE------STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF-RLVDG-KFSPDGASII-LSDDVGQLY 677 (1784)
Q Consensus 607 gH~~------~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~-~Itsl-afSPDGk~LA-sgs~DG~I~ 677 (1784)
|.. .....+|.| +..++++|-.-..|-|+|-..++.+..+..... .|.++ .|+|-+..++ .++..|.|+
T Consensus 413 -Hn~~t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 413 -HNNRTGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIY 490 (498)
T ss_pred -ccCcccccccchhheeCC-CccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEE
Confidence 221 245678999 778889999999999999988887877654433 56554 9999988455 557789999
Q ss_pred EEECCC
Q 000251 678 ILNTGQ 683 (1784)
Q Consensus 678 IWdl~s 683 (1784)
||....
T Consensus 491 vft~k~ 496 (498)
T KOG4328|consen 491 VFTNKK 496 (498)
T ss_pred EEecCC
Confidence 997543
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-19 Score=197.86 Aligned_cols=299 Identities=22% Similarity=0.302 Sum_probs=224.9
Q ss_pred ecCCCCeEEEEEcC-CCCEEEEEeCCCEEEEEECCCCC------------ee---EEecCCCCceEEEEecCCCCccEEE
Q 000251 309 RGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPDGL------------PI---SVLRGHTAAVTAIAFSPRPGSVYQL 372 (1784)
Q Consensus 309 ~gH~~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~tgk------------~i---~~L~gH~~~VtsLafSPdg~~~~~L 372 (1784)
+.|.+.|.++.+.+ .|+++++|+.||.|.|||+++.. ++ ..-.+|.-.|..+.|-|-..+ .+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG--mF 117 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG--MF 117 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc--ee
Confidence 46889999999987 68899999999999999997542 10 111468889999999997653 79
Q ss_pred EEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCC---CCEEEEeeCCceEEEEcCC
Q 000251 373 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN---GTVFVTGSSDTLARVWNAC 449 (1784)
Q Consensus 373 aSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpd---G~~LasGs~DG~IrVWDl~ 449 (1784)
.+++.|.++++||..+.+....+.+ .+.|.+-+++|= ..+||+|..+-.|++.|+.
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~m---------------------e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKM---------------------EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ecccccceEEEeecccceeeEEeec---------------------CceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 9999999999999998876665543 445777778773 4578899999999999997
Q ss_pred CCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCC
Q 000251 450 KPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 529 (1784)
Q Consensus 450 tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~ 529 (1784)
+ +.....+.||.+.|.++.|+|.. .-.|++|+.||.|++||++...
T Consensus 177 S---------Gs~sH~LsGHr~~vlaV~Wsp~~-------------------------e~vLatgsaDg~irlWDiRras 222 (397)
T KOG4283|consen 177 S---------GSFSHTLSGHRDGVLAVEWSPSS-------------------------EWVLATGSADGAIRLWDIRRAS 222 (397)
T ss_pred C---------CcceeeeccccCceEEEEeccCc-------------------------eeEEEecCCCceEEEEEeeccc
Confidence 6 44677899999999999999975 2378999999999999998421
Q ss_pred CCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEec--
Q 000251 530 SHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG-- 607 (1784)
Q Consensus 530 ~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~g-- 607 (1784)
+.+.. +..... ......+....|.+.|+.++|+.+|.++++++.|..+++|+..+|+....-.+
T Consensus 223 --gcf~~------lD~hn~------k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~ 288 (397)
T KOG4283|consen 223 --GCFRV------LDQHNT------KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPI 288 (397)
T ss_pred --ceeEE------eecccC------ccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccc
Confidence 11100 000000 00111223457889999999999999999999999999999988754221110
Q ss_pred -CCC----CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000251 608 -HTE----STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 681 (1784)
Q Consensus 608 -H~~----~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl 681 (1784)
|.. .+. +. +- +...++---.++.+.++++-+|..++.+.+|-..|.+.+|-|+=+.+.+++.|+.|+.|-.
T Consensus 289 ~~n~~~~~~~~-~~-~~-~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 289 IHNQTTSFAVH-IQ-SM-DSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cccccccceEE-Ee-ec-ccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 111 011 11 12 2233333345689999999999999999999778999999999999999999999999986
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-20 Score=224.53 Aligned_cols=286 Identities=18% Similarity=0.302 Sum_probs=222.4
Q ss_pred CEEEEEECCCCCEEEEEcCCcEEEEEECCCC----eEEEEEecCC---CCeEEEEEcC-CCCEEEEEeCCCEEEEEECCC
Q 000251 272 AVYCAIFDRSGRYVITGSDDRLVKIWSMETA----YCLASCRGHE---GDITDLAVSS-NNALVASASNDCIIRVWRLPD 343 (1784)
Q Consensus 272 ~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tg----k~l~tL~gH~---~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~t 343 (1784)
...+|...++-..|+.++. ..++||.+... .+...+++.. -.+.+|.|.. +.++||+++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 3456667788888888775 47888876432 2222222211 2345667764 466999999999999999976
Q ss_pred ---CCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCC
Q 000251 344 ---GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 420 (1784)
Q Consensus 344 ---gk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~ 420 (1784)
.+.+..|..|...|+++.|++... ++|++|+.||+|++||++...-..++ .+...
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep--~iliSGSQDg~vK~~DlR~~~S~~t~--------------------~~nSE 177 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEP--NILISGSQDGTVKCWDLRSKKSKSTF--------------------RSNSE 177 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCc--cEEEecCCCceEEEEeeecccccccc--------------------cccch
Confidence 566778899999999999999765 58999999999999999977654443 23566
Q ss_pred ceEEEEECC-CCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCC
Q 000251 421 QIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 499 (1784)
Q Consensus 421 ~V~sLafSp-dG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~ 499 (1784)
.|..+.|+| .+..|+++...|.+.+||++. +......+.+|.++|.++.|+|++
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq--------p~r~~~k~~AH~GpV~c~nwhPnr----------------- 232 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ--------PDRCEKKLTAHNGPVLCLNWHPNR----------------- 232 (839)
T ss_pred hhhceeeccCCCceEEEecCCceEEEeeccC--------chhHHHHhhcccCceEEEeecCCC-----------------
Confidence 799999999 578999999999999999985 355677889999999999999986
Q ss_pred ccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC
Q 000251 500 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 579 (1784)
Q Consensus 500 ~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG 579 (1784)
.+||||+.|+.|+|||+.+.+.. .........+|.+|.|-|..
T Consensus 233 ---------~~lATGGRDK~vkiWd~t~~~~~----------------------------~~~tInTiapv~rVkWRP~~ 275 (839)
T KOG0269|consen 233 ---------EWLATGGRDKMVKIWDMTDSRAK----------------------------PKHTINTIAPVGRVKWRPAR 275 (839)
T ss_pred ---------ceeeecCCCccEEEEeccCCCcc----------------------------ceeEEeecceeeeeeeccCc
Confidence 79999999999999999863311 11223455689999999988
Q ss_pred CEE-EEEe--cCCeEEEEECCCC-ceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 000251 580 RFV-LAAI--MDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 642 (1784)
Q Consensus 580 ~~L-aSgs--~DGsI~VWDl~tg-klv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG 642 (1784)
++. |+++ .|-.|+|||++.. -+.+++..|...++.++|-..+..++.+++.||+|..-.+.++
T Consensus 276 ~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 276 SYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred cchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 764 4444 5778999999764 4567889999999999997766788899999998876655544
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-19 Score=210.17 Aligned_cols=282 Identities=15% Similarity=0.203 Sum_probs=230.5
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCC---CeeEEecC--CCCceEEEEecCCCCccEEEEEEeCCCcEEEE
Q 000251 310 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG---LPISVLRG--HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 384 (1784)
Q Consensus 310 gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg---k~i~~L~g--H~~~VtsLafSPdg~~~~~LaSgs~DGtIrIW 384 (1784)
.|..-|.++++|...+++++|+ .|.|+|||+... .++..|.. ....|.++.++||+. .|++|+.-.+|.||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr---tLivGGeastlsiW 492 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR---TLIVGGEASTLSIW 492 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc---eEEeccccceeeee
Confidence 4888889999999999999997 468999999543 34444432 456799999999997 89999999999999
Q ss_pred ecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCccee
Q 000251 385 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 464 (1784)
Q Consensus 385 Dl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~ 464 (1784)
|+......-...+ ....-...+++.+||.++.++++.||.|.|||+.. ...++
T Consensus 493 DLAapTprikael------------------tssapaCyALa~spDakvcFsccsdGnI~vwDLhn---------q~~Vr 545 (705)
T KOG0639|consen 493 DLAAPTPRIKAEL------------------TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN---------QTLVR 545 (705)
T ss_pred eccCCCcchhhhc------------------CCcchhhhhhhcCCccceeeeeccCCcEEEEEccc---------ceeee
Confidence 9986542211111 11223467789999999999999999999999965 44688
Q ss_pred eecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccccccccccccc
Q 000251 465 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 544 (1784)
Q Consensus 465 ~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~ 544 (1784)
.+.||.+.+.||.++++| ..|.||+-|.+|+.||+++++...
T Consensus 546 qfqGhtDGascIdis~dG--------------------------tklWTGGlDntvRcWDlregrqlq------------ 587 (705)
T KOG0639|consen 546 QFQGHTDGASCIDISKDG--------------------------TKLWTGGLDNTVRCWDLREGRQLQ------------ 587 (705)
T ss_pred cccCCCCCceeEEecCCC--------------------------ceeecCCCccceeehhhhhhhhhh------------
Confidence 999999999999999987 689999999999999999744211
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcE
Q 000251 545 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRI 624 (1784)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~l 624 (1784)
-......|.++..+|.+.+|++|-.++.+.|... ++.....+.-|...|.++.|.+ .+++
T Consensus 588 ------------------qhdF~SQIfSLg~cP~~dWlavGMens~vevlh~-skp~kyqlhlheScVLSlKFa~-cGkw 647 (705)
T KOG0639|consen 588 ------------------QHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAY-CGKW 647 (705)
T ss_pred ------------------hhhhhhhheecccCCCccceeeecccCcEEEEec-CCccceeecccccEEEEEEecc-cCce
Confidence 0123356889999999999999999999988886 4555566777999999999999 6788
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000251 625 AMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 681 (1784)
Q Consensus 625 LaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl 681 (1784)
+++.|.|..+..|...-|..+...+ ....|.++.+|-|.+||++|+.|....||.+
T Consensus 648 fvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 8999999999999999998887765 5678999999999999999999988888864
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.2e-17 Score=193.50 Aligned_cols=345 Identities=27% Similarity=0.468 Sum_probs=262.5
Q ss_pred cccccccce-EEEEEccCCC-CEEEEEE-CCCCC-EEEEEcC-CcEEEEEECCC-CeEEEEEecCCCCeEEEEEcCCCCE
Q 000251 253 PSTMVQKMQ-NIKRVRGHRN-AVYCAIF-DRSGR-YVITGSD-DRLVKIWSMET-AYCLASCRGHEGDITDLAVSSNNAL 326 (1784)
Q Consensus 253 ~~~~~~~~k-~l~tL~GH~~-~Vt~VaF-SPDG~-~LATGS~-DGtIkIWDl~T-gk~l~tL~gH~~~VtsLafSpDg~l 326 (1784)
..|...... .+..+.++.. .+..+.+ ++++. +++..+. |+.+.+|++.+ +.....+..|...|.+++|+|++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 169 (466)
T COG2319 90 KLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKL 169 (466)
T ss_pred EEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCE
Confidence 334434343 6777777554 7888888 88888 5555444 99999999998 8888899999999999999999999
Q ss_pred EEEEeC-CCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCccc
Q 000251 327 VASASN-DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 405 (1784)
Q Consensus 327 LASGS~-DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~ 405 (1784)
+++++. |+.+++|++..+..+..+.+|...|.+++|+|++. ..+++++.|+.|.+||...+.....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~d~~i~~wd~~~~~~~~~----------- 236 (466)
T COG2319 170 LASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG--LLIASGSSDGTIRLWDLSTGKLLRS----------- 236 (466)
T ss_pred EEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc--eEEEEecCCCcEEEEECCCCcEEee-----------
Confidence 999886 99999999999999999999999999999998875 2455559999999998875544331
Q ss_pred CCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccc
Q 000251 406 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVAS 485 (1784)
Q Consensus 406 g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas 485 (1784)
....|...+ ...|++++.++++++.|+.+++|++..... .+..+.+|...|.++.|.|.+
T Consensus 237 --------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~--- 296 (466)
T COG2319 237 --------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--------LLRTLSGHSSSVLSVAFSPDG--- 296 (466)
T ss_pred --------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--------EEEEEecCCccEEEEEECCCC---
Confidence 112233333 238999998999999999999999965321 233336888999999999854
Q ss_pred cccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccC
Q 000251 486 RFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 565 (1784)
Q Consensus 486 ~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 565 (1784)
..+++++.|+.+.+|+..+...... .....
T Consensus 297 -----------------------~~~~~~~~d~~~~~~~~~~~~~~~~---------------------------~~~~~ 326 (466)
T COG2319 297 -----------------------KLLASGSSDGTVRLWDLETGKLLSS---------------------------LTLKG 326 (466)
T ss_pred -----------------------CEEEEeeCCCcEEEEEcCCCceEEE---------------------------eeecc
Confidence 5777788899999998775331100 00224
Q ss_pred CCCCeeEEEEcCCCCEEEEE-ecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEE-EeCCCcEEEEeCCCCc
Q 000251 566 TPRGVNMIVWSLDNRFVLAA-IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS-AGYDGKTIVWDIWEGI 643 (1784)
Q Consensus 566 h~~~VtsVafSPDG~~LaSg-s~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaS-gs~DG~IrIWDl~tG~ 643 (1784)
|...+..+.|.+++..++.+ ..|+.+.+|+............... +..+.+++ + ..+++ +..++.+.+|+.....
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 403 (466)
T COG2319 327 HEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGS 403 (466)
T ss_pred cCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECC-C-CCEEEEecCCCceEEEecccCe
Confidence 55568888884343556555 6888999999988873333333332 88999998 7 55554 7899999999999888
Q ss_pred eEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000251 644 PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 683 (1784)
Q Consensus 644 ~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~s 683 (1784)
....+......+..+.+++++.+++.++.++.+.+|+..+
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 404 LLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred eeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 8777764437888999999999999999999999999876
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=215.59 Aligned_cols=285 Identities=17% Similarity=0.243 Sum_probs=222.6
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCC-CeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecC
Q 000251 309 RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387 (1784)
Q Consensus 309 ~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg-k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~ 387 (1784)
.+|..+-+.|+|.|+|.+|++++.||.|++|+..+. ..-.++..+...|.+++.... +|++|+.+++|.+|.+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-----~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-----HFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-----ceEEeeccceEEEeeCC
Confidence 368999999999999999999999999999987655 333333337778888877553 79999999999999988
Q ss_pred CCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeec
Q 000251 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS 467 (1784)
Q Consensus 388 tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~ 467 (1784)
.+..-..+ ....-++.+++|+.+|+++|.|+.|-.|++.++.. ......+.
T Consensus 85 s~~~~~iL--------------------~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D---------~s~~~~lr 135 (933)
T KOG1274|consen 85 SGEEDTIL--------------------ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD---------SSQEKVLR 135 (933)
T ss_pred CCCcccee--------------------eeeeccceEEEEecCCcEEEeecCceeEEEEeccc---------cchheeec
Confidence 77643222 12345689999999999999999999999999865 33567889
Q ss_pred CCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCC
Q 000251 468 GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPP 547 (1784)
Q Consensus 468 gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~ 547 (1784)
+|..+|.+|.|+|.+ ..||+.+.||.|+||++.++............
T Consensus 136 gh~apVl~l~~~p~~--------------------------~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~------- 182 (933)
T KOG1274|consen 136 GHDAPVLQLSYDPKG--------------------------NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD------- 182 (933)
T ss_pred ccCCceeeeeEcCCC--------------------------CEEEEEecCceEEEEEcccchhhhhcccCCcc-------
Confidence 999999999999987 79999999999999999975532211110000
Q ss_pred CCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEec--CCCCeEEEEEecCCCcEE
Q 000251 548 PPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG--HTESTYVLDVHPFNPRIA 625 (1784)
Q Consensus 548 ~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~g--H~~~VtsLafSPdd~~lL 625 (1784)
.. ......++.++|+|+|..++..+.|+.|++|+..++.....|.. +...+.+++|+| .|.+|
T Consensus 183 ---------n~-----~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~Yi 247 (933)
T KOG1274|consen 183 ---------NE-----FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKYI 247 (933)
T ss_pred ---------cc-----ccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcEE
Confidence 00 00134577899999999999999999999999999998887753 444589999999 78999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q 000251 626 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYIL 679 (1784)
Q Consensus 626 aSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IW 679 (1784)
|+++.||.|.|||+++-.. ......|++++|-|++.-|-.....|...+|
T Consensus 248 AAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 248 AASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred eeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9999999999999987222 2234579999999999877666655554444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5e-18 Score=202.91 Aligned_cols=279 Identities=15% Similarity=0.255 Sum_probs=216.8
Q ss_pred CEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEec
Q 000251 272 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR 351 (1784)
Q Consensus 272 ~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~ 351 (1784)
.|+.++|-|||..|+.+.. ..+.|||+..|.++.++++|.+.|.|++|+.||+++|+|+.|..|.||.-.-...+ .+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY- 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY- 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee-
Confidence 8999999999998887754 46999999999999999999999999999999999999999999999985422222 22
Q ss_pred CCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCC
Q 000251 352 GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 431 (1784)
Q Consensus 352 gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG 431 (1784)
.|...|.|+.|.|-.. .|++++-. ..-+|........... ....+.+++|..||
T Consensus 91 SH~D~IQCMsFNP~~h---~LasCsLs-dFglWS~~qK~V~K~k----------------------ss~R~~~CsWtnDG 144 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITH---QLASCSLS-DFGLWSPEQKSVSKHK----------------------SSSRIICCSWTNDG 144 (1081)
T ss_pred ccCCeeeEeecCchHH---Hhhhcchh-hccccChhhhhHHhhh----------------------hheeEEEeeecCCC
Confidence 4999999999999764 67777653 4778887655432221 24568999999999
Q ss_pred CEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeE
Q 000251 432 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 511 (1784)
Q Consensus 432 ~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~L 511 (1784)
++|+.|-.+|+|.|-+.. ..+...+..-.|...+|++++|+|.... ...+.+
T Consensus 145 qylalG~~nGTIsiRNk~-------gEek~~I~Rpgg~Nspiwsi~~~p~sg~---------------------G~~di~ 196 (1081)
T KOG1538|consen 145 QYLALGMFNGTISIRNKN-------GEEKVKIERPGGSNSPIWSICWNPSSGE---------------------GRNDIL 196 (1081)
T ss_pred cEEEEeccCceEEeecCC-------CCcceEEeCCCCCCCCceEEEecCCCCC---------------------CccceE
Confidence 999999999999998652 2223344555677889999999987410 113577
Q ss_pred EEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeE
Q 000251 512 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRI 591 (1784)
Q Consensus 512 VSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI 591 (1784)
++.....++.++.+.... +..-..-.-...|+.+-++|.|++.|+.|+.+
T Consensus 197 aV~DW~qTLSFy~LsG~~------------------------------Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 197 AVADWGQTLSFYQLSGKQ------------------------------IGKDRALNFDPCCISYFTNGEYILLGGSDKQL 246 (1081)
T ss_pred EEEeccceeEEEEeccee------------------------------ecccccCCCCchhheeccCCcEEEEccCCCce
Confidence 888888888888776311 11111112235678899999999999999999
Q ss_pred EEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000251 592 CVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639 (1784)
Q Consensus 592 ~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 639 (1784)
.+|. +.|-.+.++......|+.++.+| +++.++.|+.||+|..|++
T Consensus 247 ~~fT-R~GvrLGTvg~~D~WIWtV~~~P-NsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 247 SLFT-RDGVRLGTVGEQDSWIWTVQAKP-NSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEEe-ecCeEEeeccccceeEEEEEEcc-CCceEEEEEccCeeehhhh
Confidence 9997 46777778777888999999999 7888889999999777654
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=215.70 Aligned_cols=273 Identities=12% Similarity=0.219 Sum_probs=213.1
Q ss_pred ccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Q 000251 267 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA-YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 345 (1784)
Q Consensus 267 ~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tg-k~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk 345 (1784)
.+|+..-+.|+|.|+|.+|.|++.||.|++|+...- ..-.++..+...|.+++.. +.+|++|+.+++|.+|.+..+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 369999999999999999999999999999987654 3333444477788888764 5599999999999999999987
Q ss_pred eeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEE
Q 000251 346 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 425 (1784)
Q Consensus 346 ~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sL 425 (1784)
.-..+...+-++.+++|+.+|+ ++|.|+.|-.|++-++.+......+ .+|.++|.++
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~---~iaagsdD~~vK~~~~~D~s~~~~l--------------------rgh~apVl~l 144 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGK---MIAAGSDDTAVKLLNLDDSSQEKVL--------------------RGHDAPVLQL 144 (933)
T ss_pred ccceeeeeeccceEEEEecCCc---EEEeecCceeEEEEeccccchheee--------------------cccCCceeee
Confidence 7666666778999999999998 9999999999999999877654443 5789999999
Q ss_pred EECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCC-CCCceEEEEccCcccccccccCCCCCCCCCccccc
Q 000251 426 AFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH-ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNS 504 (1784)
Q Consensus 426 afSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH-~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~ 504 (1784)
.|+|++.+||+.+.||.|+||++.++.......... ...... ...+.-++|+|++
T Consensus 145 ~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~--k~n~~~~s~i~~~~aW~Pk~---------------------- 200 (933)
T KOG1274|consen 145 SYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVD--KDNEFILSRICTRLAWHPKG---------------------- 200 (933)
T ss_pred eEcCCCCEEEEEecCceEEEEEcccchhhhhcccCC--ccccccccceeeeeeecCCC----------------------
Confidence 999999999999999999999997654322211111 111111 4556778999986
Q ss_pred cccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE
Q 000251 505 WFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 584 (1784)
Q Consensus 505 ~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS 584 (1784)
..|+..+.|+.|++|+..+ |...+.+. ...+...+..++|||+|+|||+
T Consensus 201 ----g~la~~~~d~~Vkvy~r~~---------we~~f~Lr------------------~~~~ss~~~~~~wsPnG~YiAA 249 (933)
T KOG1274|consen 201 ----GTLAVPPVDNTVKVYSRKG---------WELQFKLR------------------DKLSSSKFSDLQWSPNGKYIAA 249 (933)
T ss_pred ----CeEEeeccCCeEEEEccCC---------ceeheeec------------------ccccccceEEEEEcCCCcEEee
Confidence 5888899999999998875 33333222 1223445899999999999999
Q ss_pred EecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCc
Q 000251 585 AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 623 (1784)
Q Consensus 585 gs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~ 623 (1784)
++.||.|.|||+.+... ......|++++|.|+.+.
T Consensus 250 s~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~ 284 (933)
T KOG1274|consen 250 STLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANA 284 (933)
T ss_pred eccCCcEEEEecccchh----ccccceeEEEecCCCCCe
Confidence 99999999999988222 223457999999995543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-18 Score=201.51 Aligned_cols=287 Identities=10% Similarity=0.147 Sum_probs=226.9
Q ss_pred CCCEEEEEECCCCCEEEEEcCCcEEEEEECC--CCeEEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCEEEEEECCCCCe
Q 000251 270 RNAVYCAIFDRSGRYVITGSDDRLVKIWSME--TAYCLASCRGHEGDITDLAVSSNNA-LVASASNDCIIRVWRLPDGLP 346 (1784)
Q Consensus 270 ~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~--Tgk~l~tL~gH~~~VtsLafSpDg~-lLASGS~DGtIrVWDl~tgk~ 346 (1784)
.+.|+||.|+|.-..|++++.||+++||.+. +...++.+.--..+|.+++|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 5689999999999999999999999999875 3456677776788999999999999 899999999999999998864
Q ss_pred eE--EecCCC-CceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceE
Q 000251 347 IS--VLRGHT-AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 423 (1784)
Q Consensus 347 i~--~L~gH~-~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~ 423 (1784)
.. .+.++. ..+.....+++++ +|+..+..|.|.+....++.++..+.+ .+.|.
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~---fia~~G~~G~I~lLhakT~eli~s~Ki---------------------eG~v~ 348 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSN---FIAIAGNNGHIHLLHAKTKELITSFKI---------------------EGVVS 348 (514)
T ss_pred ccccCCCCcccchhheeEecCCCC---eEEEcccCceEEeehhhhhhhhheeee---------------------ccEEe
Confidence 33 334443 3567788899987 999999999999999999998877754 45689
Q ss_pred EEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCc--eEEEEccCcccccccccCCCCCCCCCcc
Q 000251 424 CCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDV--NYVQFSGCAVASRFSLADSSKEDSTPKF 501 (1784)
Q Consensus 424 sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V--~sLafSpdglas~~~~~~s~~~~~~~~~ 501 (1784)
.++|+.+|+.|++.+.+|.|.+||++... ++..+. -.+.| ++++.++++
T Consensus 349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~~---------~~~rf~-D~G~v~gts~~~S~ng------------------- 399 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGGTGEVYVWNLRQNS---------CLHRFV-DDGSVHGTSLCISLNG------------------- 399 (514)
T ss_pred eEEEecCCcEEEEEcCCceEEEEecCCcc---------eEEEEe-ecCccceeeeeecCCC-------------------
Confidence 99999999999999999999999997632 333322 12333 345555554
Q ss_pred ccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCE
Q 000251 502 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF 581 (1784)
Q Consensus 502 ~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~ 581 (1784)
.+|++|+..|.|-|||..+.. ......++..+..-...|+++.|++|++.
T Consensus 400 -------~ylA~GS~~GiVNIYd~~s~~-----------------------~s~~PkPik~~dNLtt~Itsl~Fn~d~qi 449 (514)
T KOG2055|consen 400 -------SYLATGSDSGIVNIYDGNSCF-----------------------ASTNPKPIKTVDNLTTAITSLQFNHDAQI 449 (514)
T ss_pred -------ceEEeccCcceEEEeccchhh-----------------------ccCCCCchhhhhhhheeeeeeeeCcchhh
Confidence 699999999999999977511 11123455566666778999999999999
Q ss_pred EEEEe--cCCeEEEEECCCCceEEEEec---CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000251 582 VLAAI--MDCRICVWNAADGSLVHSLTG---HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 640 (1784)
Q Consensus 582 LaSgs--~DGsI~VWDl~tgklv~~L~g---H~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 640 (1784)
||.++ ....+++-.+.+......+.. .-+.|+||+||| ++-++|.|..+|.|.+|.+.
T Consensus 450 LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 450 LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC-CCceEEeecCCCceeeEeec
Confidence 98877 456788888877665555543 234689999999 77788999999999999873
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-20 Score=225.68 Aligned_cols=238 Identities=23% Similarity=0.409 Sum_probs=208.2
Q ss_pred EEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCC
Q 000251 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD 343 (1784)
Q Consensus 264 ~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~t 343 (1784)
+.+..|...|.|+..-..++.+++|+.|..+-+|.+..-..+..|.+|..+|.+|.|+++..+|++|+.+|+|++||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 45678999999999988899999999999999999988777888999999999999999999999999999999999999
Q ss_pred CCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceE
Q 000251 344 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 423 (1784)
Q Consensus 344 gk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~ 423 (1784)
++.+++|.+|...+..|.|+|-+. ++++|+.|+.+++||++...+...+ .+|...|.
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~---~~a~gStdtd~~iwD~Rk~Gc~~~~--------------------~s~~~vv~ 158 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGE---FFASGSTDTDLKIWDIRKKGCSHTY--------------------KSHTRVVD 158 (825)
T ss_pred hhhhhhhhccccCcceeeeccceE---EeccccccccceehhhhccCceeee--------------------cCCcceeE
Confidence 999999999999999999999986 8899999999999999866655544 34778899
Q ss_pred EEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCcccc
Q 000251 424 CCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 503 (1784)
Q Consensus 424 sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~ 503 (1784)
++.|+|+|.+++.|+.|..++|||... ++.+..+.+|.+.|.++.|.|..
T Consensus 159 ~l~lsP~Gr~v~~g~ed~tvki~d~~a---------gk~~~ef~~~e~~v~sle~hp~e--------------------- 208 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGGEDNTVKIWDLTA---------GKLSKEFKSHEGKVQSLEFHPLE--------------------- 208 (825)
T ss_pred EEeecCCCceeeccCCcceeeeecccc---------cccccccccccccccccccCchh---------------------
Confidence 999999999999999999999999965 45677889999999999998864
Q ss_pred ccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEE
Q 000251 504 SWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVL 583 (1784)
Q Consensus 504 ~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~La 583 (1784)
-.+++|+.|+++++||+++-+. +........+|.+++|+|+|..++
T Consensus 209 -----~Lla~Gs~d~tv~f~dletfe~-----------------------------I~s~~~~~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 209 -----VLLAPGSSDRTVRFWDLETFEV-----------------------------ISSGKPETDGVRSLAFNPDGKIVL 254 (825)
T ss_pred -----hhhccCCCCceeeeeccceeEE-----------------------------eeccCCccCCceeeeecCCceeee
Confidence 3678999999999999996321 111223356899999999999999
Q ss_pred EEecC
Q 000251 584 AAIMD 588 (1784)
Q Consensus 584 Sgs~D 588 (1784)
+|...
T Consensus 255 ~G~q~ 259 (825)
T KOG0267|consen 255 SGEQI 259 (825)
T ss_pred cCchh
Confidence 98765
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-20 Score=225.89 Aligned_cols=255 Identities=20% Similarity=0.332 Sum_probs=217.4
Q ss_pred CEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcc
Q 000251 325 ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 404 (1784)
Q Consensus 325 ~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~ 404 (1784)
.+++.+..+-.++||+.+ .+..|...|.++..-..+. .+++|+.|..+-+|.+.....+.
T Consensus 5 ~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r---~~~~Gg~~~k~~L~~i~kp~~i~----------- 64 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSR---SLVTGGEDEKVNLWAIGKPNAIT----------- 64 (825)
T ss_pred cccceeeeeeccccccch------hhhhhhhhhceeeeeccce---eeccCCCceeeccccccCCchhh-----------
Confidence 345555556667788853 3456888888888754444 88999999999999876443222
Q ss_pred cCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccc
Q 000251 405 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVA 484 (1784)
Q Consensus 405 ~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdgla 484 (1784)
.+.+|...|.|+.|++...+|++|+.+|+|++||+.. .+.++.+.+|...+..+.|+|-+
T Consensus 65 ---------S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee---------Ak~vrtLtgh~~~~~sv~f~P~~-- 124 (825)
T KOG0267|consen 65 ---------SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE---------AKIVRTLTGHLLNITSVDFHPYG-- 124 (825)
T ss_pred ---------eeeccCCcceeeecCcchhhhcccccCCceeeeehhh---------hhhhhhhhccccCcceeeeccce--
Confidence 2457899999999999999999999999999999965 45677899999999999999987
Q ss_pred ccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceecc
Q 000251 485 SRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 564 (1784)
Q Consensus 485 s~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~ 564 (1784)
.++++|+.|+.+++||.+. .++.....
T Consensus 125 ------------------------~~~a~gStdtd~~iwD~Rk-----------------------------~Gc~~~~~ 151 (825)
T KOG0267|consen 125 ------------------------EFFASGSTDTDLKIWDIRK-----------------------------KGCSHTYK 151 (825)
T ss_pred ------------------------EEeccccccccceehhhhc-----------------------------cCceeeec
Confidence 5789999999999999883 34556667
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 000251 565 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 644 (1784)
Q Consensus 565 ~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~ 644 (1784)
+|...|..+.|+|+|++++.|+.|..++|||+..|+.+..|.+|.+.|..+.|+| ...++++||.|++|++||+++-+.
T Consensus 152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEV 230 (825)
T ss_pred CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCc-hhhhhccCCCCceeeeeccceeEE
Confidence 7888999999999999999999999999999999999999999999999999999 778999999999999999998888
Q ss_pred EEEEeccCcceEEEEEcCCCCEEEEEeCC
Q 000251 645 IRIYEISRFRLVDGKFSPDGASIILSDDV 673 (1784)
Q Consensus 645 l~tl~~~~~~ItslafSPDGk~LAsgs~D 673 (1784)
+.........|.+++|+|+|+.+++|...
T Consensus 231 I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 231 ISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred eeccCCccCCceeeeecCCceeeecCchh
Confidence 88877777899999999999999888654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-18 Score=205.88 Aligned_cols=307 Identities=14% Similarity=0.235 Sum_probs=225.8
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEE
Q 000251 304 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383 (1784)
Q Consensus 304 ~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrI 383 (1784)
+-..++||.+.|++|...|.|.+||+|+.||+|+||.+.+|.+++++. ..+.|.||+|+|.+... .||++- ...+.|
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~-vLAvA~-~~~~~i 468 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLC-VLAVAV-GECVLI 468 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCce-eEEEEe-cCceEE
Confidence 344578999999999999999999999999999999999999999887 45789999999997643 444444 444777
Q ss_pred EecCCCcccce-----eecCCCCCccc---CCCCC---------CCCCCCCCCCceEEEEECCCCCEEEEeeCC---ceE
Q 000251 384 WDARYSQFSPR-----IYIPRPSDAVA---GRNMA---------PSSSAGPQSHQIFCCAFNANGTVFVTGSSD---TLA 443 (1784)
Q Consensus 384 WDl~tg~~l~~-----i~l~~~~~~~~---g~~~~---------~~~s~~~h~~~V~sLafSpdG~~LasGs~D---G~I 443 (1784)
.+..-|..+.. +....+..... ...+. .....-.|...|..+.|+..|.+|++...+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 76655521111 11111000000 00000 011223467789999999999999987654 478
Q ss_pred EEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEE
Q 000251 444 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 523 (1784)
Q Consensus 444 rVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIW 523 (1784)
.|+++..... ...+....+.|.++.|+|.. .+|++++ -..|+||
T Consensus 549 liHQLSK~~s---------Q~PF~kskG~vq~v~FHPs~--------------------------p~lfVaT-q~~vRiY 592 (733)
T KOG0650|consen 549 LIHQLSKRKS---------QSPFRKSKGLVQRVKFHPSK--------------------------PYLFVAT-QRSVRIY 592 (733)
T ss_pred EEEecccccc---------cCchhhcCCceeEEEecCCC--------------------------ceEEEEe-ccceEEE
Confidence 8998865321 23344556788999999875 3555544 4579999
Q ss_pred eCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCC-ceE
Q 000251 524 IPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG-SLV 602 (1784)
Q Consensus 524 Dl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tg-klv 602 (1784)
|+..+. ....+......|..++++|.|..|+.|+.|+.++.+|+.-+ ++.
T Consensus 593 dL~kqe-----------------------------lvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPy 643 (733)
T KOG0650|consen 593 DLSKQE-----------------------------LVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPY 643 (733)
T ss_pred ehhHHH-----------------------------HHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchh
Confidence 988422 22334455667899999999999999999999999999754 678
Q ss_pred EEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC------CC---ceEEEEeccCc----ceEEEEEcCCCCEEEE
Q 000251 603 HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW------EG---IPIRIYEISRF----RLVDGKFSPDGASIIL 669 (1784)
Q Consensus 603 ~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~------tG---~~l~tl~~~~~----~ItslafSPDGk~LAs 669 (1784)
+++..|...|++|+||+ .--++++|+.||++.|+--. .. .+++.+.+|.. .|.++.|+|...+|++
T Consensus 644 k~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfs 722 (733)
T KOG0650|consen 644 KTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFS 722 (733)
T ss_pred HHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEe
Confidence 88999999999999998 55688999999999998421 11 34566666654 4889999999999999
Q ss_pred EeCCCeEEEE
Q 000251 670 SDDVGQLYIL 679 (1784)
Q Consensus 670 gs~DG~I~IW 679 (1784)
++.||+|++|
T Consensus 723 AGAd~tirlf 732 (733)
T KOG0650|consen 723 AGADGTIRLF 732 (733)
T ss_pred cCCCceEEee
Confidence 9999999998
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-18 Score=200.45 Aligned_cols=287 Identities=11% Similarity=0.168 Sum_probs=224.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEECC--CCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCC
Q 000251 312 EGDITDLAVSSNNALVASASNDCIIRVWRLP--DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 389 (1784)
Q Consensus 312 ~~~VtsLafSpDg~lLASGS~DGtIrVWDl~--tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg 389 (1784)
.+.|++|.|+|...+|++++.|++++||.+. ....++.+.-...+|.+.+|.|+|. ..+++++....+..||+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~--~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGH--SVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCc--eEEEecccceEEEEeecccc
Confidence 4789999999999999999999999999874 3345666666778999999999986 37889999999999999888
Q ss_pred cccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCC
Q 000251 390 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 469 (1784)
Q Consensus 390 ~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH 469 (1784)
+..+.-.. .......+....+++++++|+..|..|.|.+....++. .+..+ ..
T Consensus 291 k~~k~~~~-----------------~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e---------li~s~-Ki 343 (514)
T KOG2055|consen 291 KVTKLKPP-----------------YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE---------LITSF-KI 343 (514)
T ss_pred ccccccCC-----------------CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh---------hhhee-ee
Confidence 75433211 11123457788899999999999999999999987643 22222 24
Q ss_pred CCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCC
Q 000251 470 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 549 (1784)
Q Consensus 470 ~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~ 549 (1784)
.+.|..++|+.++ ..|++++.+|.|.+||+++..+ ...|..
T Consensus 344 eG~v~~~~fsSds--------------------------k~l~~~~~~GeV~v~nl~~~~~---~~rf~D---------- 384 (514)
T KOG2055|consen 344 EGVVSDFTFSSDS--------------------------KELLASGGTGEVYVWNLRQNSC---LHRFVD---------- 384 (514)
T ss_pred ccEEeeEEEecCC--------------------------cEEEEEcCCceEEEEecCCcce---EEEEee----------
Confidence 6788999999776 6888888999999999996421 111111
Q ss_pred CCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCC------CceEEEEecCCCCeEEEEEecCCCc
Q 000251 550 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD------GSLVHSLTGHTESTYVLDVHPFNPR 623 (1784)
Q Consensus 550 ~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~t------gklv~~L~gH~~~VtsLafSPdd~~ 623 (1784)
...-.-+++|.|++|.|||+|+..|.|.|||..+ .+++..+..-...|+.|.|++ +..
T Consensus 385 ---------------~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~-d~q 448 (514)
T KOG2055|consen 385 ---------------DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH-DAQ 448 (514)
T ss_pred ---------------cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc-chh
Confidence 0111346788999999999999999999999654 567777777777899999999 777
Q ss_pred EEEEEe--CCCcEEEEeCCCCceEEEEeccC---cceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000251 624 IAMSAG--YDGKTIVWDIWEGIPIRIYEISR---FRLVDGKFSPDGASIILSDDVGQLYILNTG 682 (1784)
Q Consensus 624 lLaSgs--~DG~IrIWDl~tG~~l~tl~~~~---~~ItslafSPDGk~LAsgs~DG~I~IWdl~ 682 (1784)
+||.++ .+..+++-.+.+......+.... +.|+|++|||.|.+||+|...|.|.+|.+.
T Consensus 449 iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 449 ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 777665 56789999888777666665433 468999999999999999999999999874
|
|
| >cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-19 Score=187.45 Aligned_cols=123 Identities=45% Similarity=0.730 Sum_probs=113.8
Q ss_pred cccCcCcccCCCCCcCCCCCChhhhHHHHHHHHHHHhhhcccccccccccccccc-cCCCccccCCCCCCHHHHHHHhhh
Q 000251 1648 HLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVS-QKTNFTNRFPVPLSLDVIQSRLEN 1726 (1784)
Q Consensus 1648 ~rvSPWEiep~~~~~~~p~id~e~r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~y~~~i~~Pmdl~tI~~RLen 1726 (1784)
...++|++..+. |..|.+..+.+.+++..+.++... ..+..++.|..+++.. ..|+|+++|++||||+||++||++
T Consensus 4 ~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~l~~~-~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~ 80 (128)
T cd05529 4 PLSSEWELFDPG--WEQPHIRDEERERLISGLDKLLLS-LQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLEN 80 (128)
T ss_pred CCCCchhccccc--CcCCCCCHHHHHHHHHHHHHHHhc-ccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhc
Confidence 456999987666 899999999999999999999754 3567788999999988 999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHhc
Q 000251 1727 NYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1773 (1784)
Q Consensus 1727 ~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s~i~~~a~~l~~~~~~~i~~ 1773 (1784)
++|+++++|..||+||+.||++||++++.++++|+.|+++|.+.|+.
T Consensus 81 ~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 81 RYYRSLEALRHDVRLILSNAETFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999875
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-18 Score=192.22 Aligned_cols=299 Identities=16% Similarity=0.169 Sum_probs=212.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccce
Q 000251 315 ITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPR 394 (1784)
Q Consensus 315 VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~ 394 (1784)
..|+.|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|++++||++|. .|++++.|..|.+||+..|.++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr---~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR---KLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCC---EeeeecCCceeEEEeccCCCceeE
Confidence 78999999999999999999999999999998899999999999999999997 999999999999999999999888
Q ss_pred eecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCC-EEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCc
Q 000251 395 IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDV 473 (1784)
Q Consensus 395 i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~-~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V 473 (1784)
+.+ ...|+.+.|+|... .+++.-.+..-.+.++..+. ..
T Consensus 103 irf---------------------~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-----------h~-------- 142 (405)
T KOG1273|consen 103 IRF---------------------DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-----------HS-------- 142 (405)
T ss_pred EEc---------------------cCccceeeeccccCCeEEEEEecCCcEEEEecCCc-----------ee--------
Confidence 865 45588889998543 33322223333344432110 00
Q ss_pred eEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCC
Q 000251 474 NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQ 553 (1784)
Q Consensus 474 ~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~ 553 (1784)
.+..++++. ..........-..++++++|...|.+.++|..+.+....
T Consensus 143 -~Lp~d~d~d-----------ln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas-------------------- 190 (405)
T KOG1273|consen 143 -VLPKDDDGD-----------LNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVAS-------------------- 190 (405)
T ss_pred -eccCCCccc-----------cccccccccccCCCCEEEEecCcceEEEEecchheeeee--------------------
Confidence 000111110 000000000011247999999999999999987432111
Q ss_pred CCCCCCceeccCC-CCCeeEEEEcCCCCEEEEEecCCeEEEEECCC-------Cce--EEEEec--CCCCeEEEEEecCC
Q 000251 554 PPRGGPRQRILPT-PRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD-------GSL--VHSLTG--HTESTYVLDVHPFN 621 (1784)
Q Consensus 554 ~~~~~~~~~l~~h-~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~t-------gkl--v~~L~g--H~~~VtsLafSPdd 621 (1784)
+.-. ...|..+-|+..|++|+.-+.|..|+.|++.. +++ .+.+.. ..-.=.+++|+.++
T Consensus 191 ---------~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 191 ---------FRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred ---------eeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 1111 35688899999999999999999999999863 111 111110 01122467888844
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEEeccCc-ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccccceeecCCC
Q 000251 622 PRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF-RLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDY 700 (1784)
Q Consensus 622 ~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~-~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~~~~~~~~~~fs~D~ 700 (1784)
..++++......++||.-..|.+++.+.+..+ ...++.|.|-...|++- ..|.|+||...+ .+.-.+|+||+
T Consensus 262 eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~------~enwsafAPdF 334 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ------VENWSAFAPDF 334 (405)
T ss_pred cEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec------ccchhhcCchH
Confidence 45555455667899999999999999998774 57799999998888887 669999999754 34455788888
Q ss_pred cceE
Q 000251 701 RPLV 704 (1784)
Q Consensus 701 r~Lv 704 (1784)
+-|.
T Consensus 335 qele 338 (405)
T KOG1273|consen 335 QELE 338 (405)
T ss_pred HHHH
Confidence 8763
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.3e-18 Score=188.74 Aligned_cols=285 Identities=16% Similarity=0.218 Sum_probs=214.4
Q ss_pred ccccccccccccCCccccccCCcchhhhccccccccccccc-ceEE-EEEccCCCCEEEEEECCCCCEEEEEcCCcEEEE
Q 000251 219 ADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQK-MQNI-KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKI 296 (1784)
Q Consensus 219 ~~~V~~l~~r~~Gg~~~~~~~~~~l~s~~~~~~~~~~~~~~-~k~l-~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkI 296 (1784)
.+.|..+.|.+... ..+.+.+.+..+..|.++. +..+ +....|.++|.|++|+.||..+++|+.|+.+++
T Consensus 27 ~DsIS~l~FSP~~~--------~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 27 EDSISALAFSPQAD--------NLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKL 98 (347)
T ss_pred ccchheeEeccccC--------ceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEE
Confidence 47777777777221 1222334455555666554 2222 456789999999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEcCCCC--EEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEE
Q 000251 297 WSMETAYCLASCRGHEGDITDLAVSSNNA--LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 374 (1784)
Q Consensus 297 WDl~Tgk~l~tL~gH~~~VtsLafSpDg~--lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaS 374 (1784)
||+.+++ +..+..|.++|.++.|-+... .|++|+.|++|+.||++...++.++. -...|+++..-.. .+++
T Consensus 99 wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~p-----m~vV 171 (347)
T KOG0647|consen 99 WDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVLYP-----MAVV 171 (347)
T ss_pred EEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhccCc-----eeEE
Confidence 9999994 566678999999999988665 89999999999999999999998886 4567777766543 7889
Q ss_pred EeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCC
Q 000251 375 SSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTD 454 (1784)
Q Consensus 375 gs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~ 454 (1784)
+..+..|.+|+++.+...... ...+...++.|++..++....+.|+-.|.+.|..+..+..
T Consensus 172 ata~r~i~vynL~n~~te~k~------------------~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~- 232 (347)
T KOG0647|consen 172 ATAERHIAVYNLENPPTEFKR------------------IESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP- 232 (347)
T ss_pred EecCCcEEEEEcCCCcchhhh------------------hcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-
Confidence 999999999999766432221 1123567799999999998889999999999998854211
Q ss_pred CCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccc
Q 000251 455 DSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKA 534 (1784)
Q Consensus 455 ~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~ 534 (1784)
..-..++.|...- +.++ .|
T Consensus 233 ------~~nFtFkCHR~~~-----------------------------------------~~~~--~V------------ 251 (347)
T KOG0647|consen 233 ------KDNFTFKCHRSTN-----------------------------------------SVND--DV------------ 251 (347)
T ss_pred ------cCceeEEEeccCC-----------------------------------------CCCC--ce------------
Confidence 1111222222100 0000 11
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEE
Q 000251 535 ARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYV 614 (1784)
Q Consensus 535 ~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~Vts 614 (1784)
..|++|+|+|....|+|++.||++.+||-.....+.....|..+|++
T Consensus 252 ---------------------------------YaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItc 298 (347)
T KOG0647|consen 252 ---------------------------------YAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITC 298 (347)
T ss_pred ---------------------------------EEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccce
Confidence 25889999999999999999999999999888888888999999999
Q ss_pred EEEecCCCcEEEEEeCC
Q 000251 615 LDVHPFNPRIAMSAGYD 631 (1784)
Q Consensus 615 LafSPdd~~lLaSgs~D 631 (1784)
..|+.+|..++.+.|.|
T Consensus 299 c~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 299 CSFNRNGSIFAYALGYD 315 (347)
T ss_pred eEecCCCCEEEEEeecc
Confidence 99999666666666766
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.8e-18 Score=196.44 Aligned_cols=309 Identities=18% Similarity=0.233 Sum_probs=226.7
Q ss_pred cccceEEEEEccCCCCEEEEEECCCC--CEEEEEcCCcEEEEEECCCC----eEEEEEecCCCCeEEEEEcCCC-CEEEE
Q 000251 257 VQKMQNIKRVRGHRNAVYCAIFDRSG--RYVITGSDDRLVKIWSMETA----YCLASCRGHEGDITDLAVSSNN-ALVAS 329 (1784)
Q Consensus 257 ~~~~k~l~tL~GH~~~Vt~VaFSPDG--~~LATGS~DGtIkIWDl~Tg----k~l~tL~gH~~~VtsLafSpDg-~lLAS 329 (1784)
+.........+-|...|+|++|+|.. ++||+|..-|.|-+||+.+. .-+..+..|.++|.+|.|+|.+ ..+++
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence 34455667778899999999999965 57889999999999999522 2355677899999999999955 48899
Q ss_pred EeCCCEEEEEECCCCCe--eEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCC
Q 000251 330 ASNDCIIRVWRLPDGLP--ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 407 (1784)
Q Consensus 330 GS~DGtIrVWDl~tgk~--i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~ 407 (1784)
.+.||+|++-|++.+.. +..+......+..+.|+.+.. .++.+..=|.+.+||++++.....
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~---~vl~~~~~G~f~~iD~R~~~s~~~------------- 316 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR---SVLFGDNVGNFNVIDLRTDGSEYE------------- 316 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCc---cEEEeecccceEEEEeecCCccch-------------
Confidence 99999999999987743 333333556778888888776 677777778999999998753211
Q ss_pred CCCCCCCCCCCCCceEEEEECCC-CCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccc
Q 000251 408 NMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 486 (1784)
Q Consensus 408 ~~~~~~s~~~h~~~V~sLafSpd-G~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~ 486 (1784)
....|...|.+++++|- ..+||+++.|++++|||++....... ++.....|...|.+..|+|.+
T Consensus 317 ------~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst~~HrrsV~sAyFSPs~---- 381 (498)
T KOG4328|consen 317 ------NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----PFLSTLPHRRSVNSAYFSPSG---- 381 (498)
T ss_pred ------hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----cceecccccceeeeeEEcCCC----
Confidence 12346668999999994 46899999999999999986432111 245667899999999999987
Q ss_pred ccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCC
Q 000251 487 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 566 (1784)
Q Consensus 487 ~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 566 (1784)
..|+|.+.|..|+|||..- ...|... ...+.....+
T Consensus 382 ----------------------gtl~TT~~D~~IRv~dss~------~sa~~~p----------------~~~I~Hn~~t 417 (498)
T KOG4328|consen 382 ----------------------GTLLTTCQDNEIRVFDSSC------ISAKDEP----------------LGTIPHNNRT 417 (498)
T ss_pred ----------------------CceEeeccCCceEEeeccc------ccccCCc----------------cceeeccCcc
Confidence 3599999999999999751 0111000 0000000111
Q ss_pred CCC--eeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCC-CeEE-EEEecCCCcEEEEEeCCCcEEEEeCC
Q 000251 567 PRG--VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTE-STYV-LDVHPFNPRIAMSAGYDGKTIVWDIW 640 (1784)
Q Consensus 567 ~~~--VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~-~Vts-LafSPdd~~lLaSgs~DG~IrIWDl~ 640 (1784)
... ....+|.|+..+|++|-.-..|-|+|...++.+..+..... .|.+ ..|||.+..+++.++.-|.|.||--.
T Consensus 418 ~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 418 GRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 111 33457999999999999999999999999998888755433 4554 58999555566666678888888653
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-19 Score=217.38 Aligned_cols=282 Identities=18% Similarity=0.251 Sum_probs=205.8
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEE
Q 000251 303 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 382 (1784)
Q Consensus 303 k~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIr 382 (1784)
+.++.|.||...|+|++|...|.+|++|+.|..|+||.++++.+++.+.||.+.|+.++.+.+.. .+++++.|..|+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~---~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNT---MIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhh---hhhhcccCceEE
Confidence 34455679999999999999999999999999999999999999999999999999999998765 889999999999
Q ss_pred EEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcc
Q 000251 383 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHE 462 (1784)
Q Consensus 383 IWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~ 462 (1784)
+|.+.++..+..+ .+|.+.|++|+|+|-. +.+.||++++||.+-........+
T Consensus 258 vWrl~~~~pvsvL--------------------rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp--- 310 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVL--------------------RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRP--- 310 (1113)
T ss_pred EEecCCCchHHHH--------------------hccccceeeeccCccc----cCCCCCceEeccccccccccCCCC---
Confidence 9999988755444 5799999999999954 678899999999961000000000
Q ss_pred eeeecC-CCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccc
Q 000251 463 IDVLSG-HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 541 (1784)
Q Consensus 463 i~~l~g-H~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~ 541 (1784)
+.. ....+.++.|...+ ..++||+.|+....|.+.
T Consensus 311 ---~~~~~~~~~~s~~~~~~~--------------------------~~f~Tgs~d~ea~n~e~~--------------- 346 (1113)
T KOG0644|consen 311 ---LKFTEKDLVDSILFENNG--------------------------DRFLTGSRDGEARNHEFE--------------- 346 (1113)
T ss_pred ---CCcccccceeeeeccccc--------------------------cccccccCCcccccchhh---------------
Confidence 000 01223333333322 345555555555554322
Q ss_pred cccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCC
Q 000251 542 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 621 (1784)
Q Consensus 542 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd 621 (1784)
+++|...+-.+++++. +-
T Consensus 347 ------------------------------~l~~~~~~lif~t~ss--------------------------------d~ 364 (1113)
T KOG0644|consen 347 ------------------------------QLAWRSNLLIFVTRSS--------------------------------DL 364 (1113)
T ss_pred ------------------------------HhhhhccceEEEeccc--------------------------------cc
Confidence 1122222222222222 12
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEE-EEeCCCeEEEEECCCCccccc------cccce
Q 000251 622 PRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASII-LSDDVGQLYILNTGQGESQKD------AKYDQ 694 (1784)
Q Consensus 622 ~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LA-sgs~DG~I~IWdl~sGe~~~~------~~~~~ 694 (1784)
..+.+++-.+..+++|++.+|.+++.+.+|...+..+.++|-...++ +++.||.+.|||+..|.+++. ...+.
T Consensus 365 ~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~ 444 (1113)
T KOG0644|consen 365 SSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDG 444 (1113)
T ss_pred cccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeecc
Confidence 24556677788899999999999999999999999999999888777 689999999999999877652 23566
Q ss_pred eecCCCcceE-EccCCceeeccccccc
Q 000251 695 FFLGDYRPLV-QDTYGNVLDQETQLAP 720 (1784)
Q Consensus 695 ~fs~D~r~Lv-~d~~g~vld~~tql~p 720 (1784)
.|++||..++ .+.+|.++-..+++..
T Consensus 445 kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 445 KFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ccCCCCceEecCCCCCceEEeccCCCc
Confidence 8999998877 6778877665565543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-17 Score=194.22 Aligned_cols=155 Identities=17% Similarity=0.226 Sum_probs=122.6
Q ss_pred ccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC-CCEEEE
Q 000251 506 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD-NRFVLA 584 (1784)
Q Consensus 506 ~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD-G~~LaS 584 (1784)
|+...|++++.||.|++|.+..+.. ......+...+..|...|+++.|+|- ...|++
T Consensus 638 FD~~rLAVa~ddg~i~lWr~~a~gl----------------------~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~ 695 (1012)
T KOG1445|consen 638 FDDERLAVATDDGQINLWRLTANGL----------------------PENEMTPEKILTIHGEKITSLRFHPLAADVLAV 695 (1012)
T ss_pred CChHHeeecccCceEEEEEeccCCC----------------------CcccCCcceeeecccceEEEEEecchhhhHhhh
Confidence 4467999999999999999875331 11223456677889999999999984 457889
Q ss_pred EecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEeccC-cceEEEEEcC
Q 000251 585 AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI-PIRIYEISR-FRLVDGKFSP 662 (1784)
Q Consensus 585 gs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~-~l~tl~~~~-~~ItslafSP 662 (1784)
++.|.+|++||+.+++....|.||++.|..++||| +++.+|+.+.||+|+||.-.++. ++..-.+.. ..-..+.|.-
T Consensus 696 asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac 774 (1012)
T KOG1445|consen 696 ASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC 774 (1012)
T ss_pred hhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe
Confidence 99999999999999999999999999999999999 78889999999999999987764 332222111 2334678999
Q ss_pred CCCEEEEEeCC----CeEEEEECCC
Q 000251 663 DGASIILSDDV----GQLYILNTGQ 683 (1784)
Q Consensus 663 DGk~LAsgs~D----G~I~IWdl~s 683 (1784)
||++|++.+.| .+|.+|+..+
T Consensus 775 dgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 775 DGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred cCcEEEEecccccchhhhhhhhhhh
Confidence 99999987544 4788888654
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-16 Score=195.63 Aligned_cols=440 Identities=16% Similarity=0.216 Sum_probs=278.9
Q ss_pred EccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC---EEEEEeCCCEEEEEECC
Q 000251 266 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA---LVASASNDCIIRVWRLP 342 (1784)
Q Consensus 266 L~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~---lLASGS~DGtIrVWDl~ 342 (1784)
|.|-...-....||+|+++|+.... ..|+||.+.||.++..+.+|..+++.+.+.|... ++++++.+|.|++||..
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 4444444455679999999887764 5899999999999999999999999999988544 67899999999999999
Q ss_pred CCCeeEEecCCCCceEEEEecCC----CC-------ccEEEEE--EeCCCcEEEEecCCC-----ccccee-----ecCC
Q 000251 343 DGLPISVLRGHTAAVTAIAFSPR----PG-------SVYQLLS--SSDDGTCRIWDARYS-----QFSPRI-----YIPR 399 (1784)
Q Consensus 343 tgk~i~~L~gH~~~VtsLafSPd----g~-------~~~~LaS--gs~DGtIrIWDl~tg-----~~l~~i-----~l~~ 399 (1784)
.+..++++..+ ..|..+.+.|. .. ....+.+ +..-++++-+.+.+- ...... ....
T Consensus 91 ~~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~ 169 (792)
T KOG1963|consen 91 DGELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDN 169 (792)
T ss_pred CcEEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEc
Confidence 99888877533 22333333211 00 0000111 111111111111110 000000 0000
Q ss_pred CCCccc----------------CCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcce
Q 000251 400 PSDAVA----------------GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 463 (1784)
Q Consensus 400 ~~~~~~----------------g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i 463 (1784)
+..... .+..........|...++|.+++|+++++|+|..||.|.+|.--.. .......
T Consensus 170 ~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-----~~~~~t~ 244 (792)
T KOG1963|consen 170 NSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-----SDDSETC 244 (792)
T ss_pred CCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-----ccccccc
Confidence 000000 0111112223445666899999999999999999999999976321 1123345
Q ss_pred eeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccc
Q 000251 464 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 543 (1784)
Q Consensus 464 ~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l 543 (1784)
+.+.-|...|++++|+++| .+|++|+..|.+.+|.+.+++
T Consensus 245 t~lHWH~~~V~~L~fS~~G--------------------------~~LlSGG~E~VLv~Wq~~T~~-------------- 284 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSDG--------------------------AYLLSGGREGVLVLWQLETGK-------------- 284 (792)
T ss_pred eEEEecccccceeEEecCC--------------------------ceEeecccceEEEEEeecCCC--------------
Confidence 6778899999999999998 699999999999999988744
Q ss_pred cCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecC-----------CCCe
Q 000251 544 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH-----------TEST 612 (1784)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH-----------~~~V 612 (1784)
.+-+..-...|..+.+|||+.+.+....|+.|.+....+.....++.|- .+-.
T Consensus 285 ----------------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~ 348 (792)
T KOG1963|consen 285 ----------------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT 348 (792)
T ss_pred ----------------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence 1112224567999999999999999999999999998776655444332 3346
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEec-----------cCcceEEEEEcCCCCEEEEEe--------CC
Q 000251 613 YVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI-----------SRFRLVDGKFSPDGASIILSD--------DV 673 (1784)
Q Consensus 613 tsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~-----------~~~~ItslafSPDGk~LAsgs--------~D 673 (1784)
+.+++.| ....++-.+.-|.|.+||+.+...+..+.. +.-.++.++.+-.|.++++.. .|
T Consensus 349 t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~ 427 (792)
T KOG1963|consen 349 TGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD 427 (792)
T ss_pred eeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence 7788888 556677788999999999998877765541 122577888888999999862 22
Q ss_pred --CeEEEEECCCCccccccc------------cceeecCCCc-ceEEccCCceeecccccccCcCCCCCcccCCCCCCCC
Q 000251 674 --GQLYILNTGQGESQKDAK------------YDQFFLGDYR-PLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYP 738 (1784)
Q Consensus 674 --G~I~IWdl~sGe~~~~~~------------~~~~fs~D~r-~Lv~d~~g~vld~~tql~phl~~l~~~L~D~~~~p~p 738 (1784)
-.+++|.......--.+. ...++.+.-. ..+....++.+. ++.+-.|....+..
T Consensus 428 ~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~K-----------iW~~~~~~n~~k~~ 496 (792)
T KOG1963|consen 428 GEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFK-----------IWVFTDDSNIYKKS 496 (792)
T ss_pred ceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEE-----------EEEEecccccCcCc
Confidence 367788765432211000 1112222222 233332222211 12221122222222
Q ss_pred Ccchhhhh--cccccccceEECCCCCeEEEeeCCCCCCceEeecCCCc
Q 000251 739 EPYQTMYQ--QRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADL 784 (1784)
Q Consensus 739 ~~~Q~l~~--~rr~~v~~iAfSPDG~~LAvg~d~s~~~~v~lw~l~~~ 784 (1784)
..+....- -+...+.+++||.||..||++ .+..+.+|+....
T Consensus 497 s~W~c~~i~sy~k~~i~a~~fs~dGslla~s----~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 497 SNWTCKAIGSYHKTPITALCFSQDGSLLAVS----FDDTITIWDYDTK 540 (792)
T ss_pred cceEEeeeeccccCcccchhhcCCCcEEEEe----cCCEEEEecCCCh
Confidence 22221111 145678899999999999999 8899999998763
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-18 Score=213.70 Aligned_cols=244 Identities=19% Similarity=0.349 Sum_probs=193.6
Q ss_pred EEEEEECC-CCCEEEEEcCCcEEEEEECCC---CeEEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCEEEEEECCCCCee
Q 000251 273 VYCAIFDR-SGRYVITGSDDRLVKIWSMET---AYCLASCRGHEGDITDLAVSSN-NALVASASNDCIIRVWRLPDGLPI 347 (1784)
Q Consensus 273 Vt~VaFSP-DG~~LATGS~DGtIkIWDl~T---gk~l~tL~gH~~~VtsLafSpD-g~lLASGS~DGtIrVWDl~tgk~i 347 (1784)
+..|.|.. +.++|||++..|.|.+||+.. .+++..|..|...|.++.|++- ..+|++|+.||+|++||++..+..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 44566664 457999999999999999976 5667788899999999999984 458999999999999999999999
Q ss_pred EEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEE
Q 000251 348 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 427 (1784)
Q Consensus 348 ~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLaf 427 (1784)
.++.+....|..|+|+|... ++|+++...|.|.+||++....-. ..+..|.+.|.|+.|
T Consensus 170 ~t~~~nSESiRDV~fsp~~~--~~F~s~~dsG~lqlWDlRqp~r~~-------------------~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYG--NKFASIHDSGYLQLWDLRQPDRCE-------------------KKLTAHNGPVLCLNW 228 (839)
T ss_pred ccccccchhhhceeeccCCC--ceEEEecCCceEEEeeccCchhHH-------------------HHhhcccCceEEEee
Confidence 99999999999999999754 489999999999999998654221 123469999999999
Q ss_pred CCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCcccccccc
Q 000251 428 NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 507 (1784)
Q Consensus 428 SpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~ 507 (1784)
+|++.+||+||.|+.|+||++.++.. ..+.+ .....+|..|.|-|..
T Consensus 229 hPnr~~lATGGRDK~vkiWd~t~~~~-------~~~~t-InTiapv~rVkWRP~~------------------------- 275 (839)
T KOG0269|consen 229 HPNREWLATGGRDKMVKIWDMTDSRA-------KPKHT-INTIAPVGRVKWRPAR------------------------- 275 (839)
T ss_pred cCCCceeeecCCCccEEEEeccCCCc-------cceeE-EeecceeeeeeeccCc-------------------------
Confidence 99999999999999999999965321 12222 2234678999999875
Q ss_pred CCeEEEEeC--CCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcC-CCCEEEE
Q 000251 508 HDNIVTCSR--DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-DNRFVLA 584 (1784)
Q Consensus 508 ~~~LVSgS~--DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP-DG~~LaS 584 (1784)
...|++++. |-.|.|||++- ..-+...+..|...++.++|.. |-..+.+
T Consensus 276 ~~hLAtcsmv~dtsV~VWDvrR----------------------------PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 276 SYHLATCSMVVDTSVHVWDVRR----------------------------PYIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred cchhhhhhccccceEEEEeecc----------------------------ccccceeeeccCccccceeccCCCceeeEe
Confidence 246777764 88899999983 1234456677889999999965 4556788
Q ss_pred EecCCeEEEEECCC
Q 000251 585 AIMDCRICVWNAAD 598 (1784)
Q Consensus 585 gs~DGsI~VWDl~t 598 (1784)
++.||+|..-.+.+
T Consensus 328 ~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 328 CSKDGTVLQHLFKN 341 (839)
T ss_pred ecCccHHHHhhhhc
Confidence 88888876554443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=191.65 Aligned_cols=266 Identities=17% Similarity=0.295 Sum_probs=196.2
Q ss_pred cCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCC
Q 000251 351 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 430 (1784)
Q Consensus 351 ~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpd 430 (1784)
..|.+.|..+.-++-++.. +.++-+..|.|.||++...- ..+ ..+..........+.....+|...-+.|+|||-
T Consensus 148 i~h~g~~NRvr~~~~~~~~-~~aswse~G~V~Vw~l~~~l--~~l--~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEV-LCASWSENGRVQVWDLAPHL--NAL--SEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI 222 (440)
T ss_pred cccccccceeeecccCCcc-eeeeecccCcEEEEEchhhh--hhh--cCccccccccccCceEEecccCccceeeecccc
Confidence 4577888888887776433 77788889999999986421 111 111111122334455666778888999999993
Q ss_pred C-CEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCC
Q 000251 431 G-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 509 (1784)
Q Consensus 431 G-~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~ 509 (1784)
. ..|++|.--+.|++|...++.-. .....+.+|+..|-.++|+|.- ..
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~------vd~~Pf~gH~~SVEDLqWSptE-------------------------~~ 271 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWK------VDQRPFTGHTKSVEDLQWSPTE-------------------------DG 271 (440)
T ss_pred cccccccCccccceEeeeeccCcee------ecCccccccccchhhhccCCcc-------------------------Cc
Confidence 2 34788888889999998764321 1123467799999999999975 36
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCC
Q 000251 510 NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC 589 (1784)
Q Consensus 510 ~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DG 589 (1784)
.|++||.||+|+|||++.+.. ........|...|+.|.|+.+-.+||+|+.||
T Consensus 272 vfaScS~DgsIrIWDiRs~~~---------------------------~~~~~~kAh~sDVNVISWnr~~~lLasG~DdG 324 (440)
T KOG0302|consen 272 VFASCSCDGSIRIWDIRSGPK---------------------------KAAVSTKAHNSDVNVISWNRREPLLASGGDDG 324 (440)
T ss_pred eEEeeecCceEEEEEecCCCc---------------------------cceeEeeccCCceeeEEccCCcceeeecCCCc
Confidence 899999999999999996431 12233367888999999999999999999999
Q ss_pred eEEEEECCC---CceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc----------------eEEEEec
Q 000251 590 RICVWNAAD---GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI----------------PIRIYEI 650 (1784)
Q Consensus 590 sI~VWDl~t---gklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~----------------~l~tl~~ 650 (1784)
+++|||++. ++++..|+.|..+|++|.|+|.....|+++|.|..|.|||+..-. +-+.+..
T Consensus 325 t~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFV 404 (440)
T KOG0302|consen 325 TLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFV 404 (440)
T ss_pred eEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEE
Confidence 999999975 678999999999999999999888999999999999999985321 1112222
Q ss_pred c--CcceEEEEEcCCCC-EEEEEeCCCeEEEEE
Q 000251 651 S--RFRLVDGKFSPDGA-SIILSDDVGQLYILN 680 (1784)
Q Consensus 651 ~--~~~ItslafSPDGk-~LAsgs~DG~I~IWd 680 (1784)
| ...|-.+.|++.-. +|++.+.|| +.||.
T Consensus 405 HqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 405 HQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred ecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 3 44677889998754 555666655 45554
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=200.61 Aligned_cols=264 Identities=20% Similarity=0.343 Sum_probs=189.2
Q ss_pred EEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCC-EEEEEeCCCEEEEE
Q 000251 263 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS--CRGHEGDITDLAVSSNNA-LVASASNDCIIRVW 339 (1784)
Q Consensus 263 l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~t--L~gH~~~VtsLafSpDg~-lLASGS~DGtIrVW 339 (1784)
++....|.++|..+.|-|-...|++++.|.+|++||+.+++++.. +.||.+.|.++||.+.+. .+++|+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 456778999999999999667889999999999999999999877 889999999999999665 78899999999999
Q ss_pred ECCCCC--------------------e-------eEEecCCCCceEE---EEecCCCCccEEEEEEeC-CCcEEEEecCC
Q 000251 340 RLPDGL--------------------P-------ISVLRGHTAAVTA---IAFSPRPGSVYQLLSSSD-DGTCRIWDARY 388 (1784)
Q Consensus 340 Dl~tgk--------------------~-------i~~L~gH~~~Vts---LafSPdg~~~~~LaSgs~-DGtIrIWDl~t 388 (1784)
|+.-.. + +.....+...|.+ +.+..|.. .||+++. |+.|+|||++.
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~---tlaSaga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES---TLASAGAADSTIKVWDLRK 249 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc---eeeeccCCCcceEEEeecc
Confidence 984211 1 1111234444444 44444444 7888887 99999999997
Q ss_pred CcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecC
Q 000251 389 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 468 (1784)
Q Consensus 389 g~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~g 468 (1784)
........- . +. ............+.++.....|.+|++.+.|+.|+.|++.+.. ..++..+.+
T Consensus 250 ~~~~~r~ep---~----~~--~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s-------~sP~~~~sg 313 (720)
T KOG0321|consen 250 NYTAYRQEP---R----GS--DKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS-------ISPVAEFSG 313 (720)
T ss_pred cccccccCC---C----cc--cCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC-------cCchhhccC
Confidence 764433210 0 00 0001112235568899999999999999999999999997532 223333344
Q ss_pred CCCCceEE--EEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCC
Q 000251 469 HENDVNYV--QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVP 546 (1784)
Q Consensus 469 H~~~V~sL--afSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~ 546 (1784)
+...-..+ ..+|+ +..|++|+.|..+.+|.+.+..
T Consensus 314 ~~~~sf~vks~lSpd--------------------------~~~l~SgSsd~~ayiw~vs~~e----------------- 350 (720)
T KOG0321|consen 314 KLNSSFYVKSELSPD--------------------------DCSLLSGSSDEQAYIWVVSSPE----------------- 350 (720)
T ss_pred cccceeeeeeecCCC--------------------------CceEeccCCCcceeeeeecCcc-----------------
Confidence 43222222 12343 3689999999999999888522
Q ss_pred CCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC-CEEEEEecCCeEEEEECCCC
Q 000251 547 PPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAADG 599 (1784)
Q Consensus 547 ~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG-~~LaSgs~DGsI~VWDl~tg 599 (1784)
.+...+.+|...|++++|.|.. .-+|+++.|.+++||++.++
T Consensus 351 -----------~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 351 -----------APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred -----------CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 2334567889999999998743 34677799999999999665
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-17 Score=182.53 Aligned_cols=272 Identities=15% Similarity=0.199 Sum_probs=204.4
Q ss_pred cCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECC-
Q 000251 351 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA- 429 (1784)
Q Consensus 351 ~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSp- 429 (1784)
.+|..-|+++.|.+.|. .+++++.|++|+|||.+...-.. ........|.+.|..+.|.+
T Consensus 10 s~h~DlihdVs~D~~GR---RmAtCSsDq~vkI~d~~~~s~~W----------------~~Ts~Wrah~~Si~rV~WAhP 70 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGR---RMATCSSDQTVKIWDSTSDSGTW----------------SCTSSWRAHDGSIWRVVWAHP 70 (361)
T ss_pred cCCcceeeeeeecccCc---eeeeccCCCcEEEEeccCCCCce----------------EEeeeEEecCCcEEEEEecCc
Confidence 46889999999999997 99999999999999986543221 22334566889999999976
Q ss_pred -CCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccC
Q 000251 430 -NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 508 (1784)
Q Consensus 430 -dG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~ 508 (1784)
-|+.+|+++.|+++.||.-.................+......|+.|+|.|.-+ +
T Consensus 71 EfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hl------------------------G 126 (361)
T KOG2445|consen 71 EFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHL------------------------G 126 (361)
T ss_pred cccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhc------------------------c
Confidence 589999999999999998743332233344566777888889999999998743 2
Q ss_pred CeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC---CCEEEEE
Q 000251 509 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD---NRFVLAA 585 (1784)
Q Consensus 509 ~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD---G~~LaSg 585 (1784)
=.+++++.||.++||+.-. ......|.-...+..-.. ....+.....||.|+|. ..+||+|
T Consensus 127 LklA~~~aDG~lRIYEA~d---p~nLs~W~Lq~Ei~~~~~-------------pp~~~~~~~~CvsWn~sr~~~p~iAvg 190 (361)
T KOG2445|consen 127 LKLAAASADGILRIYEAPD---PMNLSQWTLQHEIQNVID-------------PPGKNKQPCFCVSWNPSRMHEPLIAVG 190 (361)
T ss_pred eEEEEeccCcEEEEEecCC---ccccccchhhhhhhhccC-------------CcccccCcceEEeeccccccCceEEEE
Confidence 3799999999999998764 122334443222221000 11124456788999864 4578888
Q ss_pred ecC-----CeEEEEECCCC----ceEEEEecCCCCeEEEEEecCCC---cEEEEEeCCCcEEEEeCCCC-----------
Q 000251 586 IMD-----CRICVWNAADG----SLVHSLTGHTESTYVLDVHPFNP---RIAMSAGYDGKTIVWDIWEG----------- 642 (1784)
Q Consensus 586 s~D-----GsI~VWDl~tg----klv~~L~gH~~~VtsLafSPdd~---~lLaSgs~DG~IrIWDl~tG----------- 642 (1784)
+.+ +.++||....+ ..+.+|.+|..+|++|+|.|.-+ .+||+|+.|| |+||.+...
T Consensus 191 s~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~ 269 (361)
T KOG2445|consen 191 SDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLA 269 (361)
T ss_pred cccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccC
Confidence 876 47888876543 24557889999999999999655 5889999999 999998631
Q ss_pred ---------ceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000251 643 ---------IPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 682 (1784)
Q Consensus 643 ---------~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~ 682 (1784)
+.+..+..|.+.|+.+.|.-.|..|++++.||.|++|...
T Consensus 270 ~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 270 PDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred CCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 2345567888999999999999999999999999999853
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-18 Score=185.55 Aligned_cols=311 Identities=17% Similarity=0.234 Sum_probs=218.5
Q ss_pred EEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCEEEEEE
Q 000251 262 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSNNALVASASNDCIIRVWR 340 (1784)
Q Consensus 262 ~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~-gH~~~VtsLafSpDg~lLASGS~DGtIrVWD 340 (1784)
+...|++|.+.|+|+.|..+++ |.+|..-|.|++|++.+.+.+..++ .|...|+.+.-.|+ ..|.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 4567889999999999999886 8899999999999999999988888 57788999999987 4677888999999999
Q ss_pred CCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCC-cEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000251 341 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG-TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 419 (1784)
Q Consensus 341 l~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DG-tIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~ 419 (1784)
+.-+..+. -|.-.+.++.|++.. +...+... .+.+++-+............. ...........+..
T Consensus 84 ia~s~~i~---i~Si~~nslgFCrfS-----l~~~~k~~eqll~yp~rgsde~h~~D~g~~-----tqv~i~dd~~~~Kl 150 (323)
T KOG0322|consen 84 IAYSAFIS---IHSIVVNSLGFCRFS-----LVKKPKNSEQLLEYPSRGSDETHKQDGGDT-----TQVQIADDSERSKL 150 (323)
T ss_pred ccCcceEE---Eeeeeccccccccce-----eccCCCcchhheecCCcccchhhhhccCcc-----ceeEccCchhcccc
Confidence 97655443 355667777777642 22222221 122222221111000000000 00001112233455
Q ss_pred CceEEEEECC-CC--CEEEEeeCCceEEEEcCCCCCC-CCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCC
Q 000251 420 HQIFCCAFNA-NG--TVFVTGSSDTLARVWNACKPNT-DDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 495 (1784)
Q Consensus 420 ~~V~sLafSp-dG--~~LasGs~DG~IrVWDl~tg~~-~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~ 495 (1784)
+.++|..+.. ++ -++++|..+|.|.+||+.++.. ....+..+.......|..+|.++.|.+..
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~------------- 217 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC------------- 217 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-------------
Confidence 6677777543 33 3577888999999999977521 11222334455667899999999988542
Q ss_pred CCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEE
Q 000251 496 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 575 (1784)
Q Consensus 496 ~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf 575 (1784)
+.=++|+.+..+..|.+.-... .-.....+.....+|..+.+
T Consensus 218 -------------~rGisgga~dkl~~~Sl~~s~g-------------------------slq~~~e~~lknpGv~gvrI 259 (323)
T KOG0322|consen 218 -------------DRGISGGADDKLVMYSLNHSTG-------------------------SLQIRKEITLKNPGVSGVRI 259 (323)
T ss_pred -------------cCCcCCCccccceeeeeccccC-------------------------cccccceEEecCCCccceEE
Confidence 3456777788888887763110 00111122234456888999
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000251 576 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639 (1784)
Q Consensus 576 SPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 639 (1784)
-||++.+|+++.|++|+||..++..++..++.|.+.|++++|+| +..++|+|+.|++|.+|++
T Consensus 260 RpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 260 RPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999999999999999999 6778899999999999986
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=190.15 Aligned_cols=213 Identities=19% Similarity=0.319 Sum_probs=176.0
Q ss_pred EEEccCCCCEEEEEECCCCC--EEEEEcCCcEEEEEECCC----------------CeEEEEEecCCCCeEEEEEcCCCC
Q 000251 264 KRVRGHRNAVYCAIFDRSGR--YVITGSDDRLVKIWSMET----------------AYCLASCRGHEGDITDLAVSSNNA 325 (1784)
Q Consensus 264 ~tL~GH~~~Vt~VaFSPDG~--~LATGS~DGtIkIWDl~T----------------gk~l~tL~gH~~~VtsLafSpDg~ 325 (1784)
...-+|.+.|+.+..++-|+ +.|+=+..|.|+||++.. .+.+.++.+|.+.=+.|+|||-..
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 34457888888888888664 556667899999999742 356788899999999999999332
Q ss_pred -EEEEEeCCCEEEEEECCCCCee---EEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCC
Q 000251 326 -LVASASNDCIIRVWRLPDGLPI---SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 401 (1784)
Q Consensus 326 -lLASGS~DGtIrVWDl~tgk~i---~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~ 401 (1784)
.|++|..-+.|++|...+|.-. ..+.+|+..|-.|+|||.... .|++|+.||+|+|||++.+.....+.
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~--vfaScS~DgsIrIWDiRs~~~~~~~~----- 297 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG--VFASCSCDGSIRIWDIRSGPKKAAVS----- 297 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc--eEEeeecCceEEEEEecCCCccceeE-----
Confidence 5889988899999999887432 346679999999999998763 89999999999999999885444332
Q ss_pred CcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccC
Q 000251 402 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 481 (1784)
Q Consensus 402 ~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpd 481 (1784)
...|...|+.|.|+..-.+||+|+.||+++|||++.- +...++..+..|..+|++|.|+|.
T Consensus 298 -------------~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~------~~~~pVA~fk~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 298 -------------TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQF------KSGQPVATFKYHKAPITSIEWHPH 358 (440)
T ss_pred -------------eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhc------cCCCcceeEEeccCCeeEEEeccc
Confidence 2457889999999998889999999999999999864 345788899999999999999987
Q ss_pred cccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCC
Q 000251 482 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 527 (1784)
Q Consensus 482 glas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t 527 (1784)
. ...|++++.|.+|.|||+..
T Consensus 359 e-------------------------~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 359 E-------------------------DSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred c-------------------------CceEEeccCCCcEEEEEeec
Confidence 5 35889999999999999984
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-17 Score=187.86 Aligned_cols=309 Identities=19% Similarity=0.283 Sum_probs=217.3
Q ss_pred CCCEEEEEECCCCC-EEEEEcCCcEEEEEECCCC---------eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEE
Q 000251 270 RNAVYCAIFDRSGR-YVITGSDDRLVKIWSMETA---------YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 339 (1784)
Q Consensus 270 ~~~Vt~VaFSPDG~-~LATGS~DGtIkIWDl~Tg---------k~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVW 339 (1784)
..+|+.+.|.+++. +||||+.|..|+||-+..+ ..+..|..|...|+++.|+|+|.+||+|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46799999999877 9999999999999987532 2345677899999999999999999999999999999
Q ss_pred ECC--------C--------CCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCc
Q 000251 340 RLP--------D--------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 403 (1784)
Q Consensus 340 Dl~--------t--------gk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~ 403 (1784)
-.. + ....+.+.+|...|..++|+|++. ++++++.|..+++||+..|+....+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~---~l~s~s~dns~~l~Dv~~G~l~~~~-------- 161 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN---FLVSGSVDNSVRLWDVHAGQLLAIL-------- 161 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc---eeeeeeccceEEEEEeccceeEeec--------
Confidence 765 2 123456789999999999999987 9999999999999999999865544
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCc-eEEEEccCc
Q 000251 404 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDV-NYVQFSGCA 482 (1784)
Q Consensus 404 ~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V-~sLafSpdg 482 (1784)
..|.+.|..++|.|-++++++-+.|...+++.+... .....|...+ .+-++.+.
T Consensus 162 ------------~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~------------~~~~~~~~~~m~~~~~~~~- 216 (434)
T KOG1009|consen 162 ------------DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLK------------QVIKRHGLDIMPAKAFNER- 216 (434)
T ss_pred ------------cccccccceeecchhhhhhhhhccCcccceeeeeee------------eeeeeeeeeEeeecccCCC-
Confidence 358889999999999999999999987777766321 1111111100 00111100
Q ss_pred ccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCcee
Q 000251 483 VASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 562 (1784)
Q Consensus 483 las~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~ 562 (1784)
.....+++.=.+.
T Consensus 217 ---------------------------------e~~s~rLfhDeTl---------------------------------- 229 (434)
T KOG1009|consen 217 ---------------------------------EGKSTRLFHDETL---------------------------------- 229 (434)
T ss_pred ---------------------------------CcceeeeeecCch----------------------------------
Confidence 0111223221110
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEec----CC-----eEEEEECCC-CceEEEEecCCCCeEEEEEecC------------
Q 000251 563 ILPTPRGVNMIVWSLDNRFVLAAIM----DC-----RICVWNAAD-GSLVHSLTGHTESTYVLDVHPF------------ 620 (1784)
Q Consensus 563 l~~h~~~VtsVafSPDG~~LaSgs~----DG-----sI~VWDl~t-gklv~~L~gH~~~VtsLafSPd------------ 620 (1784)
..-...++|+|||.+|++... .+ ..++|+-.. .+++..+.+....+..+.|+|-
T Consensus 230 ----ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~ 305 (434)
T KOG1009|consen 230 ----KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKF 305 (434)
T ss_pred ----hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccc
Confidence 011345678888888887431 11 234444322 2344455555555555555540
Q ss_pred -----CCcEEEEEeCCCcEEEEeCCCCceEEEEe-ccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Q 000251 621 -----NPRIAMSAGYDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 686 (1784)
Q Consensus 621 -----d~~lLaSgs~DG~IrIWDl~tG~~l~tl~-~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~ 686 (1784)
-+.++|.++ ...|.|||.++-.++.... .|-..|++++|++||..|+.++.||...+..++..+.
T Consensus 306 ~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 306 LFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred ccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 122344444 4579999999888877664 4667899999999999999999999988888876544
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.8e-18 Score=217.74 Aligned_cols=285 Identities=21% Similarity=0.353 Sum_probs=219.6
Q ss_pred EEEECCCCC-EEEEE----------cCCcEEEEEECC--CCe----EEEEEecCCCCeEEEEEcCCCCE----EEEEeCC
Q 000251 275 CAIFDRSGR-YVITG----------SDDRLVKIWSME--TAY----CLASCRGHEGDITDLAVSSNNAL----VASASND 333 (1784)
Q Consensus 275 ~VaFSPDG~-~LATG----------S~DGtIkIWDl~--Tgk----~l~tL~gH~~~VtsLafSpDg~l----LASGS~D 333 (1784)
.+||+|++. +||+| +.+.++-||.+. +.. .+..+. -......|+|.+.|.. ||.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 467999886 55655 234566666553 222 333332 3456789999987765 8899999
Q ss_pred CEEEEEECCC---C---CeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCC
Q 000251 334 CIIRVWRLPD---G---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 407 (1784)
Q Consensus 334 GtIrVWDl~t---g---k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~ 407 (1784)
|.|.+||... + ..+.++..|++.|..+.|.+... .+|++|+.||.|.|||+...+.-...
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~--nlLASGa~~geI~iWDlnn~~tP~~~------------ 155 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQG--NLLASGADDGEILIWDLNKPETPFTP------------ 155 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCC--ceeeccCCCCcEEEeccCCcCCCCCC------------
Confidence 9999999754 2 34667788999999999999876 38999999999999999864322111
Q ss_pred CCCCCCCCCCCCCceEEEEECCC-CCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCC--CCceEEEEccCccc
Q 000251 408 NMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE--NDVNYVQFSGCAVA 484 (1784)
Q Consensus 408 ~~~~~~s~~~h~~~V~sLafSpd-G~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~--~~V~sLafSpdgla 484 (1784)
........|.+++|+.. ...|++++.+|.+.|||++.. +.+..+..|. ..+..|+|+|+..
T Consensus 156 ------~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~---------~pii~ls~~~~~~~~S~l~WhP~~a- 219 (1049)
T KOG0307|consen 156 ------GSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK---------KPIIKLSDTPGRMHCSVLAWHPDHA- 219 (1049)
T ss_pred ------CCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC---------CcccccccCCCccceeeeeeCCCCc-
Confidence 02234667999999874 467889999999999999763 2333344443 3578899999862
Q ss_pred ccccccCCCCCCCCCccccccccCCeEEEEeCCC---cEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCce
Q 000251 485 SRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG---SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 561 (1784)
Q Consensus 485 s~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DG---tIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~ 561 (1784)
..|++++.|. .|.+||++. ...+.+
T Consensus 220 ------------------------Tql~~As~dd~~PviqlWDlR~----------------------------assP~k 247 (1049)
T KOG0307|consen 220 ------------------------TQLLVASGDDSAPVIQLWDLRF----------------------------ASSPLK 247 (1049)
T ss_pred ------------------------eeeeeecCCCCCceeEeecccc----------------------------cCCchh
Confidence 4666666553 589999984 234556
Q ss_pred eccCCCCCeeEEEEcCCC-CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000251 562 RILPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 640 (1784)
Q Consensus 562 ~l~~h~~~VtsVafSPDG-~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 640 (1784)
.+..|..+|.++.|++.+ .+|++++.|+.|.+|+..+|+.+..+....+.++.+.|+|-+..++++++.||.|.|+.+.
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 677899999999999877 8999999999999999999999999998889999999999888899999999999999986
Q ss_pred CC
Q 000251 641 EG 642 (1784)
Q Consensus 641 tG 642 (1784)
.+
T Consensus 328 ~~ 329 (1049)
T KOG0307|consen 328 GT 329 (1049)
T ss_pred cC
Confidence 54
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.4e-17 Score=181.85 Aligned_cols=316 Identities=17% Similarity=0.268 Sum_probs=221.1
Q ss_pred ceEEEE-EccCCCCEEEEEECC-----CCCEEEEEcCCcEEEEEECCCC---eEEEEEe--cCCCCeEEEEEcCCC----
Q 000251 260 MQNIKR-VRGHRNAVYCAIFDR-----SGRYVITGSDDRLVKIWSMETA---YCLASCR--GHEGDITDLAVSSNN---- 324 (1784)
Q Consensus 260 ~k~l~t-L~GH~~~Vt~VaFSP-----DG~~LATGS~DGtIkIWDl~Tg---k~l~tL~--gH~~~VtsLafSpDg---- 324 (1784)
++.... ..+|..+|+.++|.+ .-..+||++.+ .|.||..... ..++++. .|......++|+-+.
T Consensus 27 yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~ 105 (385)
T KOG1034|consen 27 YKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGN 105 (385)
T ss_pred eEeeeehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCC
Confidence 344433 457899999999985 23567777654 6888876532 3344432 367778889998643
Q ss_pred CEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcc
Q 000251 325 ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 404 (1784)
Q Consensus 325 ~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~ 404 (1784)
-+||.|+.-|.|+|.|+.++++...+.+|...|..|.|+|+.. ++|++++.|..|++|++.+..++..+-
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~--qlvls~SkD~svRlwnI~~~~Cv~VfG-------- 175 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP--QLVLSASKDHSVRLWNIQTDVCVAVFG-------- 175 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCC--cEEEEecCCceEEEEeccCCeEEEEec--------
Confidence 3899999999999999999999999999999999999999865 489999999999999999998876651
Q ss_pred cCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCC------CCc-------------ceee
Q 000251 405 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ------PNH-------------EIDV 465 (1784)
Q Consensus 405 ~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~------~~~-------------~i~~ 465 (1784)
...+|...|.++.|+.+|.+|++++.|..|++|++.......... +.+ ...+
T Consensus 176 ---------G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 176 ---------GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred ---------ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 245789999999999999999999999999999996432100000 000 0001
Q ss_pred ecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccC
Q 000251 466 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKV 545 (1784)
Q Consensus 466 l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~ 545 (1784)
..-|...|.|+.|. ++++++-|.++.|..|.+-..+ ..++ ..
T Consensus 247 ~diHrnyVDCvrw~----------------------------gd~ilSkscenaI~~w~pgkl~---------e~~~-~v 288 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWF----------------------------GDFILSKSCENAIVCWKPGKLE---------ESIH-NV 288 (385)
T ss_pred cccccchHHHHHHH----------------------------hhheeecccCceEEEEecchhh---------hhhh-cc
Confidence 11223333333332 4689999999999999763100 0111 00
Q ss_pred CCCCCCCCCCCCCCceeccCCCCCeeEE--EEcCCCCEEEEEecCCeEEEEECCCCceE--EEEec--CCCCeEEEEEec
Q 000251 546 PPPPMPPQPPRGGPRQRILPTPRGVNMI--VWSLDNRFVLAAIMDCRICVWNAADGSLV--HSLTG--HTESTYVLDVHP 619 (1784)
Q Consensus 546 ~~~~~~~~~~~~~~~~~l~~h~~~VtsV--afSPDG~~LaSgs~DGsI~VWDl~tgklv--~~L~g--H~~~VtsLafSP 619 (1784)
.+.........++.-....|.-+ +|.|-++.||.|...|.|++||+.+..+. .++.. ....|...+|+.
T Consensus 289 -----kp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~ 363 (385)
T KOG1034|consen 289 -----KPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR 363 (385)
T ss_pred -----CCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc
Confidence 00011112222333334455555 55678899999999999999999886653 22222 235688999998
Q ss_pred CCCcEEEEEeCCCcEEEEeC
Q 000251 620 FNPRIAMSAGYDGKTIVWDI 639 (1784)
Q Consensus 620 dd~~lLaSgs~DG~IrIWDl 639 (1784)
++.+|+....|++|.-||.
T Consensus 364 -dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 364 -DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred -cCcEEEEEeCCCcEEEEEe
Confidence 7778888889999999985
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=191.97 Aligned_cols=240 Identities=20% Similarity=0.298 Sum_probs=184.2
Q ss_pred CCCEEEEEcCCcEEEEEECCCC---eEEE------------------EEecCCCCeEEEEEcCCC-CEEEEEeCCCEEEE
Q 000251 281 SGRYVITGSDDRLVKIWSMETA---YCLA------------------SCRGHEGDITDLAVSSNN-ALVASASNDCIIRV 338 (1784)
Q Consensus 281 DG~~LATGS~DGtIkIWDl~Tg---k~l~------------------tL~gH~~~VtsLafSpDg-~lLASGS~DGtIrV 338 (1784)
.|+|+|.|+.|..|.|||+.=- .+.. .-.+|+..|.+|+|+.+- ..||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 3689999999999999997411 1111 123699999999998754 48999999999999
Q ss_pred EECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCC
Q 000251 339 WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 418 (1784)
Q Consensus 339 WDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h 418 (1784)
||+.+|++..++..|.+.|.++.|+|... .+|++|+.|++|.+.|.+........ -..
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p--~~LLsGs~D~~V~l~D~R~~~~s~~~--------------------wk~ 328 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEP--SVLLSGSYDGTVALKDCRDPSNSGKE--------------------WKF 328 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCc--eEEEeccccceEEeeeccCccccCce--------------------EEe
Confidence 99999999999999999999999999865 48999999999999999853222111 113
Q ss_pred CCceEEEEECCCC-CEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCC
Q 000251 419 SHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 497 (1784)
Q Consensus 419 ~~~V~sLafSpdG-~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~ 497 (1784)
.+.|-.++|.|.. ..+++++.||+|+-+|++.. ++++..+..|.+.|.+|++++..
T Consensus 329 ~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~--------~~~vwt~~AHd~~ISgl~~n~~~--------------- 385 (463)
T KOG0270|consen 329 DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP--------GKPVWTLKAHDDEISGLSVNIQT--------------- 385 (463)
T ss_pred ccceEEEEecCCCceeEEEecCCceEEeeecCCC--------CCceeEEEeccCCcceEEecCCC---------------
Confidence 5678899999865 56788889999999999853 57889999999999999998754
Q ss_pred CCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcC
Q 000251 498 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL 577 (1784)
Q Consensus 498 ~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP 577 (1784)
+..+++++.|+.|++|++....... ........+...|+++.|
T Consensus 386 ----------p~~l~t~s~d~~Vklw~~~~~~~~~---------------------------v~~~~~~~~rl~c~~~~~ 428 (463)
T KOG0270|consen 386 ----------PGLLSTASTDKVVKLWKFDVDSPKS---------------------------VKEHSFKLGRLHCFALDP 428 (463)
T ss_pred ----------CcceeeccccceEEEEeecCCCCcc---------------------------cccccccccceeecccCC
Confidence 4689999999999999987422100 000000112255667777
Q ss_pred CCCE-EEEEecCCeEEEEECCCCceE
Q 000251 578 DNRF-VLAAIMDCRICVWNAADGSLV 602 (1784)
Q Consensus 578 DG~~-LaSgs~DGsI~VWDl~tgklv 602 (1784)
+-.+ ++.|+..+.++|||+.+...+
T Consensus 429 ~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 429 DVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CcceEEEecCccceEEEeecccChhH
Confidence 6654 566778888999999876554
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-17 Score=185.33 Aligned_cols=305 Identities=15% Similarity=0.223 Sum_probs=217.7
Q ss_pred EEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCC------CeEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCE
Q 000251 263 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET------AYCLASCR-GHEGDITDLAVSSNNALVASASNDCI 335 (1784)
Q Consensus 263 l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~T------gk~l~tL~-gH~~~VtsLafSpDg~lLASGS~DGt 335 (1784)
.+.+.+|.+.|+++.||.+|++||+|++|..++||+++. .+++.... .|...|.|++|...++.|++|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 356889999999999999999999999999999999853 34444433 36689999999999999999999999
Q ss_pred EEEEECCCCCeeEEecC--CCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCC
Q 000251 336 IRVWRLPDGLPISVLRG--HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 413 (1784)
Q Consensus 336 IrVWDl~tgk~i~~L~g--H~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~ 413 (1784)
|.+.|+++.+.+.++.. ..+.|+.+..+|..+ .|++.+.+|.|.+||.+.........++
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN---~~~~~t~~~~V~~~D~Rd~~~~~~~~~~--------------- 190 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN---TLIVVTRAKLVSFIDNRDRQNPISLVLP--------------- 190 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCc---eEEEEecCceEEEEeccCCCCCCceeee---------------
Confidence 99999999988877752 345999999999876 8999999999999999876532222221
Q ss_pred CCCCCCCceEEEEECCCC-CEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCC
Q 000251 414 SAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 492 (1784)
Q Consensus 414 s~~~h~~~V~sLafSpdG-~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s 492 (1784)
........++.|+|.. .+|++.+..+-+.|||.+........ ......+......-.++.|+|+|
T Consensus 191 --AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~--~~~~~~L~~~~~~~M~~~~~~~G---------- 256 (609)
T KOG4227|consen 191 --ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQ--RSMFKGLPQENTEWMGSLWSPSG---------- 256 (609)
T ss_pred --cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHh--hhccccCcccchhhhheeeCCCC----------
Confidence 1123456788899954 67888888899999999864321000 00111122222334567788876
Q ss_pred CCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeE
Q 000251 493 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 572 (1784)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 572 (1784)
+.|++.-....-.+||+-+.++....... .+.+. .....+.+
T Consensus 257 ----------------~Q~msiRR~~~P~~~D~~S~R~~V~k~D~----------------N~~GY------~N~~T~KS 298 (609)
T KOG4227|consen 257 ----------------NQFMSIRRGKCPLYFDFISQRCFVLKSDH----------------NPNGY------CNIKTIKS 298 (609)
T ss_pred ----------------CeehhhhccCCCEEeeeecccceeEeccC----------------CCCcc------eeeeeeee
Confidence 45555555555566666643311000000 00011 01223566
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCC----------C-------------ceEEEEecCCCCeEEEEEecCCCcEEEEEe
Q 000251 573 IVWSLDNRFVLAAIMDCRICVWNAAD----------G-------------SLVHSLTGHTESTYVLDVHPFNPRIAMSAG 629 (1784)
Q Consensus 573 VafSPDG~~LaSgs~DGsI~VWDl~t----------g-------------klv~~L~gH~~~VtsLafSPdd~~lLaSgs 629 (1784)
++|--|- .|++|+.+-.|++|.+.. | +.+.+|+||...+..|.|+| ...+|++.|
T Consensus 299 ~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~-H~~~l~SSG 376 (609)
T KOG4227|consen 299 MTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ-HNNLLVSSG 376 (609)
T ss_pred eeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC-CcceEeccc
Confidence 7776554 499999999999998743 1 23457899999999999999 678888999
Q ss_pred CCCcEEEEeC
Q 000251 630 YDGKTIVWDI 639 (1784)
Q Consensus 630 ~DG~IrIWDl 639 (1784)
-...++||.-
T Consensus 377 VE~~~KlWS~ 386 (609)
T KOG4227|consen 377 VENSFKLWSD 386 (609)
T ss_pred hhhheecccc
Confidence 9999999975
|
|
| >cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-18 Score=172.65 Aligned_cols=100 Identities=20% Similarity=0.303 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhhcccccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCC
Q 000251 1675 LLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGR 1752 (1784)
Q Consensus 1675 l~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~ 1752 (1784)
+.-.+..++.....++.+++|..|++.. ..||||++|++||||+||++||++++|+++++|..||+|||.||.+||++
T Consensus 6 ~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 85 (107)
T cd05497 6 LQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKP 85 (107)
T ss_pred HHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3334445455555678899999999865 68999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHhcC
Q 000251 1753 NTDLSTKIKRLSDLVTRTLSSL 1774 (1784)
Q Consensus 1753 ~s~i~~~a~~l~~~~~~~i~~~ 1774 (1784)
+++++++|..|+++|.+.|+.|
T Consensus 86 ~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 86 GDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999765
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-17 Score=211.40 Aligned_cols=293 Identities=18% Similarity=0.306 Sum_probs=216.3
Q ss_pred EEEEcCCCC-EEEEE----------eCCCEEEEEECC--CC----CeeEEecCCCCceEEEEecCCCCcc-EEEEEEeCC
Q 000251 317 DLAVSSNNA-LVASA----------SNDCIIRVWRLP--DG----LPISVLRGHTAAVTAIAFSPRPGSV-YQLLSSSDD 378 (1784)
Q Consensus 317 sLafSpDg~-lLASG----------S~DGtIrVWDl~--tg----k~i~~L~gH~~~VtsLafSPdg~~~-~~LaSgs~D 378 (1784)
.+||+|.+. +||+| +.+.++-||.+. +. +++..+. -....+.++|.+.+... -+|+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 467888886 55554 234556666542 22 2333333 34567899999877521 158889999
Q ss_pred CcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCC-CEEEEeeCCceEEEEcCCCCCCCCCC
Q 000251 379 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSD 457 (1784)
Q Consensus 379 GtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG-~~LasGs~DG~IrVWDl~tg~~~~s~ 457 (1784)
|.|.+||...-.. +...........|.+.|..+.|++.+ ++||+|+.+|.|.|||+.+.......
T Consensus 90 G~I~ly~p~~~~~--------------~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~ 155 (1049)
T KOG0307|consen 90 GNIVLYDPASIIA--------------NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP 155 (1049)
T ss_pred CceEEecchhhcc--------------CcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC
Confidence 9999999865200 11112233445689999999999965 59999999999999999764322111
Q ss_pred CCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccc
Q 000251 458 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 537 (1784)
Q Consensus 458 ~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w 537 (1784)
+ -......|.+++|+... ...|++++.+|.+.|||++..+.+
T Consensus 156 --~-----~~~~~~eI~~lsWNrkv-------------------------qhILAS~s~sg~~~iWDlr~~~pi------ 197 (1049)
T KOG0307|consen 156 --G-----SQAPPSEIKCLSWNRKV-------------------------SHILASGSPSGRAVIWDLRKKKPI------ 197 (1049)
T ss_pred --C-----CCCCcccceEeccchhh-------------------------hHHhhccCCCCCceeccccCCCcc------
Confidence 1 22346789999998643 258999999999999999953311
Q ss_pred cccccccCCCCCCCCCCCCCCCceeccCC--CCCeeEEEEcCCCC-EEEEEecCC---eEEEEECCC-CceEEEEecCCC
Q 000251 538 TQAYHLKVPPPPMPPQPPRGGPRQRILPT--PRGVNMIVWSLDNR-FVLAAIMDC---RICVWNAAD-GSLVHSLTGHTE 610 (1784)
Q Consensus 538 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h--~~~VtsVafSPDG~-~LaSgs~DG---sI~VWDl~t-gklv~~L~gH~~ 610 (1784)
..+..+ ...+..++|+|++. .|++++.|. .|.+||++. ..+++++++|..
T Consensus 198 -----------------------i~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~ 254 (1049)
T KOG0307|consen 198 -----------------------IKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR 254 (1049)
T ss_pred -----------------------cccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc
Confidence 111111 13578899999875 456666554 499999876 457788899999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc
Q 000251 611 STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGA-SIILSDDVGQLYILNTGQGE 685 (1784)
Q Consensus 611 ~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk-~LAsgs~DG~I~IWdl~sGe 685 (1784)
.|.+|.|++.|.++|+|++.|+.|.+|+..+|+.+..+......+..+.|+|... .+++++-+|.|.|+.+..+.
T Consensus 255 GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999999989999999999999999999999999988778899999999876 77788999999999986543
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-15 Score=189.36 Aligned_cols=364 Identities=16% Similarity=0.186 Sum_probs=251.8
Q ss_pred cccccccccceEEEEEccCCCCEEEEEECCCCC---EEEEEcCCcEEEEEECCCCeEEEEEe------------------
Q 000251 251 AKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGR---YVITGSDDRLVKIWSMETAYCLASCR------------------ 309 (1784)
Q Consensus 251 ~~~~~~~~~~k~l~tL~GH~~~Vt~VaFSPDG~---~LATGS~DGtIkIWDl~Tgk~l~tL~------------------ 309 (1784)
-.-.+...++.+++.|.+|...++.+.+.|... ++++++.||+|++||...+.+++++.
T Consensus 38 ~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s 117 (792)
T KOG1963|consen 38 FVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADIS 117 (792)
T ss_pred EEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCcc
Confidence 334556678889999999999999999998654 67899999999999976544333220
Q ss_pred --------------------------------------------------------------------------------
Q 000251 310 -------------------------------------------------------------------------------- 309 (1784)
Q Consensus 310 -------------------------------------------------------------------------------- 309 (1784)
T Consensus 118 ~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~ 197 (792)
T KOG1963|consen 118 ANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSS 197 (792)
T ss_pred ceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeecc
Confidence
Q ss_pred -----cCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCC--C--CeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCc
Q 000251 310 -----GHEGDITDLAVSSNNALVASASNDCIIRVWRLPD--G--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 380 (1784)
Q Consensus 310 -----gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~t--g--k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGt 380 (1784)
.|.-.++|.+++|+++++|+|..||.|.+|.--. + .....+.-|...|++++|+++|. +|++|+..|.
T Consensus 198 ~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~---~LlSGG~E~V 274 (792)
T KOG1963|consen 198 RDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA---YLLSGGREGV 274 (792)
T ss_pred chhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc---eEeecccceE
Confidence 1333467889999999999999999999996322 1 23456777999999999999998 9999999999
Q ss_pred EEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCC
Q 000251 381 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 460 (1784)
Q Consensus 381 IrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~ 460 (1784)
+.+|.+.+++ +++ + ..-...|..+.++||+.+.++...|..|.+..+.+.......+..
T Consensus 275 Lv~Wq~~T~~--kqf-L------------------PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi 333 (792)
T KOG1963|consen 275 LVLWQLETGK--KQF-L------------------PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGI 333 (792)
T ss_pred EEEEeecCCC--ccc-c------------------cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCc
Confidence 9999999887 222 1 123567999999999999999999999999987543221111110
Q ss_pred cce--eeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccccccc
Q 000251 461 HEI--DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 538 (1784)
Q Consensus 461 ~~i--~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~ 538 (1784)
... ..-....+-.+.++++|.. +.++-.+..|.|.+||+-+.........-.
T Consensus 334 ~~~~~~~k~~~~~l~t~~~idpr~--------------------------~~~vln~~~g~vQ~ydl~td~~i~~~~v~~ 387 (792)
T KOG1963|consen 334 KPPTPSTKTRPQSLTTGVSIDPRT--------------------------NSLVLNGHPGHVQFYDLYTDSTIYKLQVCD 387 (792)
T ss_pred cCCCccccccccccceeEEEcCCC--------------------------CceeecCCCceEEEEeccccceeeeEEEEe
Confidence 000 0011123445556666632 578888999999999998754322111111
Q ss_pred ccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe--------cC--CeEEEEECCCCc----eEE-
Q 000251 539 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI--------MD--CRICVWNAADGS----LVH- 603 (1784)
Q Consensus 539 ~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs--------~D--GsI~VWDl~tgk----lv~- 603 (1784)
..+. .+. ..+...++.++.+..|.+++|+- .| -.+++|-..... +..
T Consensus 388 ~n~~-------------~~~-----~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~ 449 (792)
T KOG1963|consen 388 ENYS-------------DGD-----VNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTK 449 (792)
T ss_pred eccc-------------CCc-----ceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEE
Confidence 1000 000 02334688888999999999853 23 357889765433 222
Q ss_pred EEecCCCCeEEEEEecCCCc-EEEEEeCCCcEEEEeCCCC----------ceEEEEeccCcceEEEEEcCCCCEEEEEeC
Q 000251 604 SLTGHTESTYVLDVHPFNPR-IAMSAGYDGKTIVWDIWEG----------IPIRIYEISRFRLVDGKFSPDGASIILSDD 672 (1784)
Q Consensus 604 ~L~gH~~~VtsLafSPdd~~-lLaSgs~DG~IrIWDl~tG----------~~l~tl~~~~~~ItslafSPDGk~LAsgs~ 672 (1784)
....|...+...++.+.-.. .+++++.||.++||-+... .|...-.-|..+++.++||.||..|+++ .
T Consensus 450 I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~ 528 (792)
T KOG1963|consen 450 INNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS-F 528 (792)
T ss_pred EecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-c
Confidence 23467777666666543343 7889999999999988322 2222222367789999999999766655 4
Q ss_pred CCeEEEEECCC
Q 000251 673 VGQLYILNTGQ 683 (1784)
Q Consensus 673 DG~I~IWdl~s 683 (1784)
++.|.|||..+
T Consensus 529 ~~~Itiwd~~~ 539 (792)
T KOG1963|consen 529 DDTITIWDYDT 539 (792)
T ss_pred CCEEEEecCCC
Confidence 58999999887
|
|
| >cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.6e-18 Score=169.91 Aligned_cols=102 Identities=15% Similarity=0.275 Sum_probs=93.1
Q ss_pred hhhhHHHHHHHHHHHhhhcccccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhh
Q 000251 1669 DDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNA 1746 (1784)
Q Consensus 1669 ~e~r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na 1746 (1784)
++.+++++.++.+|... +..+++|..|++.. ..|+||++|+.||||+||++||+++.|.++.+|..||++||+||
T Consensus 2 ~~l~~~~~~il~~l~~~---~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na 78 (108)
T cd05495 2 EELRQALMPTLEKLYKQ---DPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNA 78 (108)
T ss_pred HHHHHHHHHHHHHHHHc---CcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 56788899999888652 26788888888765 68999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHHhc
Q 000251 1747 ESYFGRNTDLSTKIKRLSDLVTRTLSS 1773 (1784)
Q Consensus 1747 ~~fN~~~s~i~~~a~~l~~~~~~~i~~ 1773 (1784)
++||+++|.++++|..|++.|.+.|+.
T Consensus 79 ~~yN~~~s~i~~~a~~l~~~F~~~~~~ 105 (108)
T cd05495 79 WLYNRKTSRVYKYCTKLAEVFEQEIDP 105 (108)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999875
|
Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.6e-16 Score=172.76 Aligned_cols=276 Identities=19% Similarity=0.280 Sum_probs=204.3
Q ss_pred EEEEECCCCCEEEEEcCCcEEEEEECCC--------Ce----EEEEEe-cCCCCeEEEEEc-------CCCCEEEEEeCC
Q 000251 274 YCAIFDRSGRYVITGSDDRLVKIWSMET--------AY----CLASCR-GHEGDITDLAVS-------SNNALVASASND 333 (1784)
Q Consensus 274 t~VaFSPDG~~LATGS~DGtIkIWDl~T--------gk----~l~tL~-gH~~~VtsLafS-------pDg~lLASGS~D 333 (1784)
..+.|||||..|++-+.|..+.+|++.. +. ...+++ .....|...+|- |+..++|+.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 3567999999999999999999999732 11 111222 134567777775 677799999999
Q ss_pred CEEEEEECCCCCeeEEecC--CCC---ceEEEEecCCCCccEEEEEEeCCCcEEEEec-CCCcccceeecCCCCCcccCC
Q 000251 334 CIIRVWRLPDGLPISVLRG--HTA---AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA-RYSQFSPRIYIPRPSDAVAGR 407 (1784)
Q Consensus 334 GtIrVWDl~tgk~i~~L~g--H~~---~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl-~tg~~l~~i~l~~~~~~~~g~ 407 (1784)
.-|++||.-+|+....+.+ |.. ...+++|+|||. +|++ +....|++||+ +.|.........
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe---qlfa-GykrcirvFdt~RpGr~c~vy~t~--------- 199 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE---QLFA-GYKRCIRVFDTSRPGRDCPVYTTV--------- 199 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC---eEee-cccceEEEeeccCCCCCCcchhhh---------
Confidence 9999999999998877764 322 457899999997 5554 55678999999 566543332110
Q ss_pred CCCCCCCCCCCCCceEEEEECCC-CCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccc
Q 000251 408 NMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 486 (1784)
Q Consensus 408 ~~~~~~s~~~h~~~V~sLafSpd-G~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~ 486 (1784)
.....+..+.|.|++|+|- ...+++|+....+-||.-.. ..++..+.+|.+.|+.++|.++|
T Consensus 200 ----~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~---------~~pl~llggh~gGvThL~~~edG---- 262 (406)
T KOG2919|consen 200 ----TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG---------RRPLQLLGGHGGGVTHLQWCEDG---- 262 (406)
T ss_pred ----hcccccccceeeeeeccCCCCcceeeecccceeeeEecCC---------CCceeeecccCCCeeeEEeccCc----
Confidence 0112345667899999994 46999999988888887643 45677888999999999999998
Q ss_pred ccccCCCCCCCCCccccccccCCeEEEEeC-CCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccC
Q 000251 487 FSLADSSKEDSTPKFKNSWFCHDNIVTCSR-DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 565 (1784)
Q Consensus 487 ~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~-DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 565 (1784)
+.|.+|+. |-.|..||++..+ .++..+..
T Consensus 263 ----------------------n~lfsGaRk~dkIl~WDiR~~~----------------------------~pv~~L~r 292 (406)
T KOG2919|consen 263 ----------------------NKLFSGARKDDKILCWDIRYSR----------------------------DPVYALER 292 (406)
T ss_pred ----------------------CeecccccCCCeEEEEeehhcc----------------------------chhhhhhh
Confidence 67777776 7899999999522 11222222
Q ss_pred CCC---CeeEEEEcCCCCEEEEEecCCeEEEEECCC-CceEEEEecCCCCeEEEEEecCCCcEEEEEeC
Q 000251 566 TPR---GVNMIVWSLDNRFVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY 630 (1784)
Q Consensus 566 h~~---~VtsVafSPDG~~LaSgs~DGsI~VWDl~t-gklv~~L~gH~~~VtsLafSPdd~~lLaSgs~ 630 (1784)
|.. .-.-+...|+|++|++|+.||.|++||+.+ |..+..+..|...|+.++++|. -.++++++.
T Consensus 293 hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~-mpilatssG 360 (406)
T KOG2919|consen 293 HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI-MPILATSSG 360 (406)
T ss_pred hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcc-cceeeeccC
Confidence 222 222345579999999999999999999998 8888999999999999999994 556666654
|
|
| >cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-17 Score=169.97 Aligned_cols=102 Identities=15% Similarity=0.252 Sum_probs=92.6
Q ss_pred hhhHHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhh
Q 000251 1670 DNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESY 1749 (1784)
Q Consensus 1670 e~r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~f 1749 (1784)
+++..|..++..+.. +..+++|..|++....|+|+++|++||||+||++||++++|.++++|..||+|||.||++|
T Consensus 5 ~w~~~c~~il~~l~~----~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~y 80 (119)
T cd05496 5 DWKKQCKELVNLMWD----CEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSY 80 (119)
T ss_pred HHHHHHHHHHHHHHh----CCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 456667777777654 6788999999998899999999999999999999999999999999999999999999999
Q ss_pred cCC-CcHHHHHHHHHHHHHHHHHhcCC
Q 000251 1750 FGR-NTDLSTKIKRLSDLVTRTLSSLK 1775 (1784)
Q Consensus 1750 N~~-~s~i~~~a~~l~~~~~~~i~~~~ 1775 (1784)
|++ ++.|+.+|..|+++|.+.++++.
T Consensus 81 N~~~~s~i~~~a~~L~~~F~~~~~~l~ 107 (119)
T cd05496 81 TPNKRSRIYSMTLRLSALFEEHIKKII 107 (119)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 985 99999999999999999988764
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-17 Score=169.50 Aligned_cols=103 Identities=18% Similarity=0.262 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhc
Q 000251 1671 NRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1750 (1784)
Q Consensus 1671 ~r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN 1750 (1784)
....|..++.++.. +..+++|..+++....|+||++|+.||||+||++||++++|+++++|+.||++||+||.+||
T Consensus 13 ~~~~c~~il~~l~~----~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN 88 (115)
T cd05504 13 NLSALEQLLVEIVK----HKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYN 88 (115)
T ss_pred HHHHHHHHHHHHHh----CCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 44556666666643 56789999999988999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhcCCCC
Q 000251 1751 GRNTDLSTKIKRLSDLVTRTLSSLKAP 1777 (1784)
Q Consensus 1751 ~~~s~i~~~a~~l~~~~~~~i~~~~~~ 1777 (1784)
+++|.++++|..|+++|.+.++++..|
T Consensus 89 ~~~s~i~~~A~~l~~~f~~~~~~~~~~ 115 (115)
T cd05504 89 PEHTSVYKAGTRLQRFFIKRCRKLGLP 115 (115)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999998764
|
Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-17 Score=164.80 Aligned_cols=95 Identities=14% Similarity=0.300 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCC
Q 000251 1673 NKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGR 1752 (1784)
Q Consensus 1673 ~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~ 1752 (1784)
+++..++.++.+ ++.+++|..+++....|+||++|+.||||+||++||+++.|.++++|..||+|||+||.+||++
T Consensus 3 ~~c~~il~~l~~----~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 78 (97)
T cd05505 3 QKCEEILSKILK----YRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYEN 78 (97)
T ss_pred HHHHHHHHHHHh----CCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 455566666643 6778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHH
Q 000251 1753 NTDLSTKIKRLSDLVTRTL 1771 (1784)
Q Consensus 1753 ~s~i~~~a~~l~~~~~~~i 1771 (1784)
+|.|+.+|.+|+++|.++|
T Consensus 79 ~s~i~~~a~~le~~f~~~~ 97 (97)
T cd05505 79 GSYVLSCMRKTEQCCVNLL 97 (97)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999998764
|
The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.7e-16 Score=180.98 Aligned_cols=283 Identities=14% Similarity=0.168 Sum_probs=207.3
Q ss_pred cEEEEEECCCCeEEEEEecC--CCCeEEEEEcCCCC-EEEEEeCCCEEEEEECCCCC---e--eEEecCCCCceEEEEec
Q 000251 292 RLVKIWSMETAYCLASCRGH--EGDITDLAVSSNNA-LVASASNDCIIRVWRLPDGL---P--ISVLRGHTAAVTAIAFS 363 (1784)
Q Consensus 292 GtIkIWDl~Tgk~l~tL~gH--~~~VtsLafSpDg~-lLASGS~DGtIrVWDl~tgk---~--i~~L~gH~~~VtsLafS 363 (1784)
.+++|||+......-.+..| ...|.++.|+..+. .+|+.+.|..|++|.- .|+ . +..+.+. .-.|++..
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K-~g~~~~Vp~~~k~~gd--~~~Cv~~~ 88 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEK-DGKTPEVPRVRKLTGD--NAFCVACA 88 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecc-cCCCCccceeeccccc--hHHHHhhh
Confidence 36999999766554444333 23489999998764 2344456889999973 333 1 2222222 33344433
Q ss_pred CCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceE
Q 000251 364 PRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 443 (1784)
Q Consensus 364 Pdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~I 443 (1784)
...- ++++|+..++|+|||++...+... ...|...|+++.++-...+||+++..|.|
T Consensus 89 s~S~---y~~sgG~~~~Vkiwdl~~kl~hr~--------------------lkdh~stvt~v~YN~~DeyiAsvs~gGdi 145 (673)
T KOG4378|consen 89 SQSL---YEISGGQSGCVKIWDLRAKLIHRF--------------------LKDHQSTVTYVDYNNTDEYIASVSDGGDI 145 (673)
T ss_pred hcce---eeeccCcCceeeehhhHHHHHhhh--------------------ccCCcceeEEEEecCCcceeEEeccCCcE
Confidence 3322 899999999999999984432222 34688899999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCCcceeeecCC-CCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEE
Q 000251 444 RVWNACKPNTDDSDQPNHEIDVLSGH-ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAII 522 (1784)
Q Consensus 444 rVWDl~tg~~~~s~~~~~~i~~l~gH-~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrI 522 (1784)
.|..+.++.. ...+.-. ...|.-+.|++.. ..+|.+++.+|.|.+
T Consensus 146 iih~~~t~~~---------tt~f~~~sgqsvRll~ys~sk-------------------------r~lL~~asd~G~Vtl 191 (673)
T KOG4378|consen 146 IIHGTKTKQK---------TTTFTIDSGQSVRLLRYSPSK-------------------------RFLLSIASDKGAVTL 191 (673)
T ss_pred EEEecccCcc---------ccceecCCCCeEEEeeccccc-------------------------ceeeEeeccCCeEEE
Confidence 9999976432 2222222 3345578888754 247889999999999
Q ss_pred EeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC-EEEEEecCCeEEEEECCCCce
Q 000251 523 WIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWNAADGSL 601 (1784)
Q Consensus 523 WDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~-~LaSgs~DGsI~VWDl~tgkl 601 (1784)
||+..... ...-...|..+...|+|+|... +|++.+.|..|.+||+...+.
T Consensus 192 wDv~g~sp----------------------------~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s 243 (673)
T KOG4378|consen 192 WDVQGMSP----------------------------IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS 243 (673)
T ss_pred EeccCCCc----------------------------ccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc
Confidence 99985331 1112345778888999999665 567899999999999998877
Q ss_pred EEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceEEEEeccCcceEEEEEcCCC
Q 000251 602 VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE-GIPIRIYEISRFRLVDGKFSPDG 664 (1784)
Q Consensus 602 v~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t-G~~l~tl~~~~~~ItslafSPDG 664 (1784)
...+.. ..+...++|++ ++.+|+.|...|.|..||+.. ..++.++..|...|++++|-|--
T Consensus 244 ~~~l~y-~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 244 TDRLTY-SHPLSTVAFSE-CGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cceeee-cCCcceeeecC-CceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 777763 55688999999 889999999999999999974 57889999999999999998865
|
|
| >cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-17 Score=166.08 Aligned_cols=100 Identities=17% Similarity=0.222 Sum_probs=92.0
Q ss_pred hhHHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhc
Q 000251 1671 NRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1750 (1784)
Q Consensus 1671 ~r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN 1750 (1784)
++..|+.++..+.+ +..+++|..|++....|+|+++|+.||||+||++||+++.|+++++|..||+|||+||.+||
T Consensus 4 ~~~~~~~il~~l~~----~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 79 (104)
T cd05507 4 WKKAILLVYRTLAS----HRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYN 79 (104)
T ss_pred HHHHHHHHHHHHHc----CCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 46777777777744 77889999999988999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhcC
Q 000251 1751 GRNTDLSTKIKRLSDLVTRTLSSL 1774 (1784)
Q Consensus 1751 ~~~s~i~~~a~~l~~~~~~~i~~~ 1774 (1784)
++++.++.+|+.|++.+.+.|..+
T Consensus 80 ~~~s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 80 SSDHDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999998654
|
In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-17 Score=163.44 Aligned_cols=94 Identities=15% Similarity=0.190 Sum_probs=84.2
Q ss_pred HHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCcH
Q 000251 1676 LSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTD 1755 (1784)
Q Consensus 1676 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s~ 1755 (1784)
-..|..+.+.+. ++.+++|..|++....|||+++|+.||||+||++||+++.|+++++|..||+|||+||.+||+++|.
T Consensus 5 ~~~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~s~ 83 (99)
T cd05508 5 SKLLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHK 83 (99)
T ss_pred HHHHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 334444444444 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000251 1756 LSTKIKRLSDLVTRT 1770 (1784)
Q Consensus 1756 i~~~a~~l~~~~~~~ 1770 (1784)
++.+|+.|.+.+.+.
T Consensus 84 i~~~A~~l~~~~~~e 98 (99)
T cd05508 84 LTQAAKAIVKICEQE 98 (99)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998764
|
RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-16 Score=190.62 Aligned_cols=271 Identities=23% Similarity=0.282 Sum_probs=198.2
Q ss_pred ccceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCC--------CeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 000251 258 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET--------AYCLASCRGHEGDITDLAVSSNNALVAS 329 (1784)
Q Consensus 258 ~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~T--------gk~l~tL~gH~~~VtsLafSpDg~lLAS 329 (1784)
+++.+-.++..|...|.+++|.+....|++++.||+|++|+++. -+.+.+|++|.++|.|+++.+++..+++
T Consensus 282 k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ys 361 (577)
T KOG0642|consen 282 KKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYS 361 (577)
T ss_pred eecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEe
Confidence 44555568999999999999999999999999999999999932 3578899999999999999999999999
Q ss_pred EeCCCEEEEEECCCC----------CeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCC
Q 000251 330 ASNDCIIRVWRLPDG----------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR 399 (1784)
Q Consensus 330 GS~DGtIrVWDl~tg----------k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~ 399 (1784)
|+.||+|+.|++... .....+.||++.|+.+++++... .|++++.||+|++|+...... .++..
T Consensus 362 gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~---~Llscs~DgTvr~w~~~~~~~-~~f~~-- 435 (577)
T KOG0642|consen 362 GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD---RLLSCSSDGTVRLWEPTEESP-CTFGE-- 435 (577)
T ss_pred eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc---ceeeecCCceEEeeccCCcCc-cccCC--
Confidence 999999999976421 23456789999999999999876 899999999999999865543 11100
Q ss_pred CCCcccCCCCCCCCCCCCCCCceEEEEECCCC-CEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEE
Q 000251 400 PSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 478 (1784)
Q Consensus 400 ~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG-~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLaf 478 (1784)
....+..+++.|-... ..+++ +.....+.+.+.. -+..+.+
T Consensus 436 ----------------~~e~g~Plsvd~~ss~~a~~~~---s~~~~~~~~~~~e-------------------v~s~~~~ 477 (577)
T KOG0642|consen 436 ----------------PKEHGYPLSVDRTSSRPAHSLA---SFRFGYTSIDDME-------------------VVSDLLI 477 (577)
T ss_pred ----------------ccccCCcceEeeccchhHhhhh---hcccccccchhhh-------------------hhhheee
Confidence 0112233444443222 11111 2222222221100 0001111
Q ss_pred ccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCC
Q 000251 479 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGG 558 (1784)
Q Consensus 479 Spdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~ 558 (1784)
.+. +.++.
T Consensus 478 ~~s---------------------------------~~~~~--------------------------------------- 485 (577)
T KOG0642|consen 478 FES---------------------------------SASPG--------------------------------------- 485 (577)
T ss_pred ccc---------------------------------cCCCc---------------------------------------
Confidence 110 00000
Q ss_pred CceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000251 559 PRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638 (1784)
Q Consensus 559 ~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD 638 (1784)
......++-+.+.|.+.+.+++..|+.|+++|..+|.+++....|...|+++++.| ++-+|++++.||.|++|.
T Consensus 486 -----~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 486 -----PRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred -----ccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecC-CCceEEeecCCceeehhh
Confidence 00123467788999999999999999999999999999999999999999999999 778889999999999999
Q ss_pred CCCCceEEEEec
Q 000251 639 IWEGIPIRIYEI 650 (1784)
Q Consensus 639 l~tG~~l~tl~~ 650 (1784)
+....++.....
T Consensus 560 ld~k~~~~es~~ 571 (577)
T KOG0642|consen 560 LDVKTCVLESTA 571 (577)
T ss_pred ccchheeecccc
Confidence 987777655543
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.7e-16 Score=182.71 Aligned_cols=268 Identities=16% Similarity=0.243 Sum_probs=194.4
Q ss_pred EEEEecCC----CCccEEEEEEeCCCcEEEEecCCCcc-cceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCC-C
Q 000251 358 TAIAFSPR----PGSVYQLLSSSDDGTCRIWDARYSQF-SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-G 431 (1784)
Q Consensus 358 tsLafSPd----g~~~~~LaSgs~DGtIrIWDl~tg~~-l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpd-G 431 (1784)
.|++|... +...+++|.|+.|..|.|||+.--.. .+.+.+...................+|...|..++|+.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 56666432 23335999999999999999874332 222222111111111111123344578888999999875 4
Q ss_pred CEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeE
Q 000251 432 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 511 (1784)
Q Consensus 432 ~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~L 511 (1784)
+.||+|+.|.+|.+||+.++ ++...+..|.+.|.++.|+|.. +..|
T Consensus 257 nVLaSgsaD~TV~lWD~~~g---------~p~~s~~~~~k~Vq~l~wh~~~-------------------------p~~L 302 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTG---------KPKSSITHHGKKVQTLEWHPYE-------------------------PSVL 302 (463)
T ss_pred eeEEecCCCceEEEEEcCCC---------CcceehhhcCCceeEEEecCCC-------------------------ceEE
Confidence 68999999999999999874 4566777899999999999875 4799
Q ss_pred EEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC-EEEEEecCCe
Q 000251 512 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDCR 590 (1784)
Q Consensus 512 VSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~-~LaSgs~DGs 590 (1784)
++|+.|++|.+.|.+... ... ......+.|-.++|.|... .+++++.||+
T Consensus 303 LsGs~D~~V~l~D~R~~~--~s~---------------------------~~wk~~g~VEkv~w~~~se~~f~~~tddG~ 353 (463)
T KOG0270|consen 303 LSGSYDGTVALKDCRDPS--NSG---------------------------KEWKFDGEVEKVAWDPHSENSFFVSTDDGT 353 (463)
T ss_pred EeccccceEEeeeccCcc--ccC---------------------------ceEEeccceEEEEecCCCceeEEEecCCce
Confidence 999999999999998411 111 1122346788899998665 5667789999
Q ss_pred EEEEECCC-CceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe--ccCcceEEEEEcCCCC-E
Q 000251 591 ICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE--ISRFRLVDGKFSPDGA-S 666 (1784)
Q Consensus 591 I~VWDl~t-gklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~--~~~~~ItslafSPDGk-~ 666 (1784)
|+-+|+++ ++++.++..|.++|.+|++++..+.++++++.|+.|++|++..-....... -.-+...|.++.|+-. +
T Consensus 354 v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~ 433 (463)
T KOG0270|consen 354 VYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFT 433 (463)
T ss_pred EEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceE
Confidence 99999987 599999999999999999999888999999999999999986543321111 1122356778888765 5
Q ss_pred EEEEeCCCeEEEEECCCCcccc
Q 000251 667 IILSDDVGQLYILNTGQGESQK 688 (1784)
Q Consensus 667 LAsgs~DG~I~IWdl~sGe~~~ 688 (1784)
||.|+..+.++|||+.++..+.
T Consensus 434 la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 434 LAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred EEecCccceEEEeecccChhHH
Confidence 6678888899999998876543
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.6e-16 Score=170.52 Aligned_cols=269 Identities=21% Similarity=0.348 Sum_probs=202.4
Q ss_pred CcEEEEEECCCCe--E-EEEEecCCCCeEEEEEcCCCC-EEEEEeCC-------CEEEEEECCCC---------CeeEEe
Q 000251 291 DRLVKIWSMETAY--C-LASCRGHEGDITDLAVSSNNA-LVASASND-------CIIRVWRLPDG---------LPISVL 350 (1784)
Q Consensus 291 DGtIkIWDl~Tgk--~-l~tL~gH~~~VtsLafSpDg~-lLASGS~D-------GtIrVWDl~tg---------k~i~~L 350 (1784)
|..|.+.++..+. + -..|..|.+.|+.|+-+|-.. +|+++..+ -.+.||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 6778877765432 2 235667899999999999554 56665442 34789988542 334444
Q ss_pred c-CCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCccc-ceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEC
Q 000251 351 R-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS-PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 428 (1784)
Q Consensus 351 ~-gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l-~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafS 428 (1784)
. .+-+.|.||.|.|++. .|++-. |..|.+|++..+..+ ..+. ......+....++-+|+
T Consensus 119 dteavg~i~cvew~Pns~---klasm~-dn~i~l~~l~ess~~vaev~---------------ss~s~e~~~~ftsg~Ws 179 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSD---KLASMD-DNNIVLWSLDESSKIVAEVL---------------SSESAEMRHSFTSGAWS 179 (370)
T ss_pred CHHHhCceeeEEEcCCCC---eeEEec-cCceEEEEcccCcchheeec---------------ccccccccceecccccC
Confidence 3 4567999999999876 676665 888999999887652 2221 11112256678889999
Q ss_pred C--CCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccc
Q 000251 429 A--NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWF 506 (1784)
Q Consensus 429 p--dG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~ 506 (1784)
| +|+.+++. .|+++..||+++.+. ....-.+|...|..+.|+|+.
T Consensus 180 pHHdgnqv~tt-~d~tl~~~D~RT~~~--------~~sI~dAHgq~vrdlDfNpnk------------------------ 226 (370)
T KOG1007|consen 180 PHHDGNQVATT-SDSTLQFWDLRTMKK--------NNSIEDAHGQRVRDLDFNPNK------------------------ 226 (370)
T ss_pred CCCccceEEEe-CCCcEEEEEccchhh--------hcchhhhhcceeeeccCCCCc------------------------
Confidence 9 78877776 488999999987432 233446788899999999986
Q ss_pred cCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC-CCEEEEE
Q 000251 507 CHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD-NRFVLAA 585 (1784)
Q Consensus 507 ~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD-G~~LaSg 585 (1784)
..+|++|+.||.|+|||.+. ...+...+.+|...|.+|.|.|- .++|++|
T Consensus 227 -q~~lvt~gDdgyvriWD~R~----------------------------tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 227 -QHILVTCGDDGYVRIWDTRK----------------------------TKFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred -eEEEEEcCCCccEEEEeccC----------------------------CCccccccCCCceEEEEEEecCccceEEEec
Confidence 35899999999999999985 23566778889999999999985 4677899
Q ss_pred ecCCeEEEEECCCC-----------------------------ceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 000251 586 IMDCRICVWNAADG-----------------------------SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIV 636 (1784)
Q Consensus 586 s~DGsI~VWDl~tg-----------------------------klv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrI 636 (1784)
+.|..|.+|.+..- ..+.++..|.+.|++++||.-++.++|+-++||.+.|
T Consensus 278 ~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 278 GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred CCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 99999999976431 1345677899999999999989999999999999998
Q ss_pred EeCC
Q 000251 637 WDIW 640 (1784)
Q Consensus 637 WDl~ 640 (1784)
=.+.
T Consensus 358 s~V~ 361 (370)
T KOG1007|consen 358 SSVP 361 (370)
T ss_pred ecCC
Confidence 7764
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.9e-16 Score=182.14 Aligned_cols=263 Identities=15% Similarity=0.195 Sum_probs=203.2
Q ss_pred CEEEEEECCCCCE-EEEEcCCcEEEEEECC--CCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeE
Q 000251 272 AVYCAIFDRSGRY-VITGSDDRLVKIWSME--TAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 348 (1784)
Q Consensus 272 ~Vt~VaFSPDG~~-LATGS~DGtIkIWDl~--Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~ 348 (1784)
.|..+.|+....+ +|+.+.|..|++|.-. ++..-..-......-.|++......++++|+..+.|+|||++...+.+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 3899999887642 2344568899999743 222222111122244555555566899999999999999999777888
Q ss_pred EecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEC
Q 000251 349 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 428 (1784)
Q Consensus 349 ~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafS 428 (1784)
.+++|...|+++.+.-... +|++++..|.|.|..+.++.....+.. +.+..|.-+.|+
T Consensus 116 ~lkdh~stvt~v~YN~~De---yiAsvs~gGdiiih~~~t~~~tt~f~~-------------------~sgqsvRll~ys 173 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDE---YIASVSDGGDIIIHGTKTKQKTTTFTI-------------------DSGQSVRLLRYS 173 (673)
T ss_pred hccCCcceeEEEEecCCcc---eeEEeccCCcEEEEecccCccccceec-------------------CCCCeEEEeecc
Confidence 9999999999999988765 999999999999999988875544422 223446789999
Q ss_pred CCCC-EEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCcccccccc
Q 000251 429 ANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 507 (1784)
Q Consensus 429 pdG~-~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~ 507 (1784)
+..+ +|.+++.+|.|.+||+... .........|..+...|+|+|..
T Consensus 174 ~skr~lL~~asd~G~VtlwDv~g~--------sp~~~~~~~HsAP~~gicfspsn------------------------- 220 (673)
T KOG4378|consen 174 PSKRFLLSIASDKGAVTLWDVQGM--------SPIFHASEAHSAPCRGICFSPSN------------------------- 220 (673)
T ss_pred cccceeeEeeccCCeEEEEeccCC--------CcccchhhhccCCcCcceecCCc-------------------------
Confidence 9765 5667889999999999542 23445678899999999999975
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEec
Q 000251 508 HDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM 587 (1784)
Q Consensus 508 ~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~ 587 (1784)
..+||+.+.|..|.+||..+.+.. .......+...++|+++|.+|++|..
T Consensus 221 e~l~vsVG~Dkki~~yD~~s~~s~------------------------------~~l~y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 221 EALLVSVGYDKKINIYDIRSQAST------------------------------DRLTYSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred cceEEEecccceEEEeeccccccc------------------------------ceeeecCCcceeeecCCceEEEeecC
Confidence 358999999999999999863321 11223456789999999999999999
Q ss_pred CCeEEEEECCC-CceEEEEecCCCCeEEEEEec
Q 000251 588 DCRICVWNAAD-GSLVHSLTGHTESTYVLDVHP 619 (1784)
Q Consensus 588 DGsI~VWDl~t-gklv~~L~gH~~~VtsLafSP 619 (1784)
.|.|..||++. ..++.++..|...|++|+|-|
T Consensus 271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred CceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 99999999975 568899999999999999988
|
|
| >cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-17 Score=165.67 Aligned_cols=101 Identities=11% Similarity=0.183 Sum_probs=88.9
Q ss_pred HHHHHHHHHhhhccc-ccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCC
Q 000251 1675 LLSAFAKLEQSANRV-QDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRN 1753 (1784)
Q Consensus 1675 l~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~ 1753 (1784)
+++.+.++++....+ +.+++|..+++....|+||++|+.||||+||++||+++.|.++++|..|++|||+||..||+++
T Consensus 8 ~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN~~~ 87 (112)
T cd05510 8 FYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNSDP 87 (112)
T ss_pred HHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 444444444444445 6789999999999999999999999999999999999999999999999999999999999986
Q ss_pred c-HHHHHHHHHHHHHHHHHhcCC
Q 000251 1754 T-DLSTKIKRLSDLVTRTLSSLK 1775 (1784)
Q Consensus 1754 s-~i~~~a~~l~~~~~~~i~~~~ 1775 (1784)
+ .++++|+.|++.|.+.|..++
T Consensus 88 s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 88 SHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCC
Confidence 6 788999999999999999886
|
SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=188.15 Aligned_cols=329 Identities=18% Similarity=0.312 Sum_probs=240.9
Q ss_pred ccccccccccceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEe-cCCCCeEEEEEcCC--CCE
Q 000251 250 IAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSN--NAL 326 (1784)
Q Consensus 250 ~~~~~~~~~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~-gH~~~VtsLafSpD--g~l 326 (1784)
.......++.+.+...|.+|.+.|..|.|...|..|++||+|..|.+||+..+.....+. ||...|....|-|. .+.
T Consensus 122 ~~~s~~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~t 201 (559)
T KOG1334|consen 122 ACGSRLFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRT 201 (559)
T ss_pred hhhhHHHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcC
Confidence 333455678888899999999999999999999999999999999999999998877765 79999988889884 458
Q ss_pred EEEEeCCCEEEEEECC-CCCe--eEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCc
Q 000251 327 VASASNDCIIRVWRLP-DGLP--ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 403 (1784)
Q Consensus 327 LASGS~DGtIrVWDl~-tgk~--i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~ 403 (1784)
|++++.||.|++=.+. ++.+ ...+..|.+.|.-++.-|+.. +.|.+++.|+.+.-+|++++.....+.....
T Consensus 202 i~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~--- 276 (559)
T KOG1334|consen 202 IVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP--KPFLSCGEDAVVFHIDLRQDVPAEKFVCREA--- 276 (559)
T ss_pred ceeccccCceeeeeeccccceecceecccccCccceeeecCCCC--CcccccccccceeeeeeccCCccceeeeecc---
Confidence 9999999999998764 3433 345667999999999999876 4799999999999999988765444421100
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEECCCC-CEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeec------CCCCCceEE
Q 000251 404 VAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS------GHENDVNYV 476 (1784)
Q Consensus 404 ~~g~~~~~~~s~~~h~~~V~sLafSpdG-~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~------gH~~~V~sL 476 (1784)
.....-....++..|.. ..+++|+.|..++|||.+......... .+..+. ...-.|+++
T Consensus 277 -----------~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~---~~~~f~p~hl~~d~~v~ITgl 342 (559)
T KOG1334|consen 277 -----------DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG---VLDKFCPHHLVEDDPVNITGL 342 (559)
T ss_pred -----------CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccc---hhhhcCCccccccCcccceeE
Confidence 00112357789999855 589999999999999997643211111 111221 223468899
Q ss_pred EEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCC
Q 000251 477 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 556 (1784)
Q Consensus 477 afSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~ 556 (1784)
+|+.++ .-|++.-.|-.|+++.-.-+. ...+.+..+..
T Consensus 343 ~Ysh~~--------------------------sElLaSYnDe~IYLF~~~~~~----------------G~~p~~~s~~~ 380 (559)
T KOG1334|consen 343 VYSHDG--------------------------SELLASYNDEDIYLFNKSMGD----------------GSEPDPSSPRE 380 (559)
T ss_pred EecCCc--------------------------cceeeeecccceEEecccccc----------------CCCCCCCcchh
Confidence 998765 355566667778888433111 11111111111
Q ss_pred CCCceeccCCCCC--eeEEE-EcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 000251 557 GGPRQRILPTPRG--VNMIV-WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK 633 (1784)
Q Consensus 557 ~~~~~~l~~h~~~--VtsVa-fSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~ 633 (1784)
....+.+.+|... |..+- |-|...|+++|+.-|.|.||+-.++++++.+.+....|+||.-||..+ +||+.|-|..
T Consensus 381 ~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~P-vLAsSGid~D 459 (559)
T KOG1334|consen 381 QYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLP-VLASSGIDHD 459 (559)
T ss_pred hccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCc-hhhccCCccc
Confidence 1112225555433 55665 468999999999999999999999999999998888999999999554 7789999999
Q ss_pred EEEEeCC
Q 000251 634 TIVWDIW 640 (1784)
Q Consensus 634 IrIWDl~ 640 (1784)
|+||...
T Consensus 460 VKIWTP~ 466 (559)
T KOG1334|consen 460 VKIWTPL 466 (559)
T ss_pred eeeecCC
Confidence 9999763
|
|
| >cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.8e-17 Score=163.22 Aligned_cols=99 Identities=19% Similarity=0.372 Sum_probs=89.9
Q ss_pred HHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCcH
Q 000251 1676 LSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTD 1755 (1784)
Q Consensus 1676 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s~ 1755 (1784)
+..+..++.....+..++.|..+++....|+|+++|++||||+||++||++++|+++++|..||++||+||.+||++++.
T Consensus 3 ~~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~ 82 (101)
T cd05509 3 YTQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTE 82 (101)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 34445555555557888999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 000251 1756 LSTKIKRLSDLVTRTLSSL 1774 (1784)
Q Consensus 1756 i~~~a~~l~~~~~~~i~~~ 1774 (1784)
++++|..|++.|.++|+++
T Consensus 83 ~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 83 YYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999875
|
Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=179.82 Aligned_cols=182 Identities=24% Similarity=0.366 Sum_probs=144.6
Q ss_pred ccccceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEe-cCCCCeEEEEEcC--CCCEEEEEeC
Q 000251 256 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSS--NNALVASASN 332 (1784)
Q Consensus 256 ~~~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~-gH~~~VtsLafSp--Dg~lLASGS~ 332 (1784)
++..+.+-+.|.||++.|+|++|+.+|.+||+||+|-.|.|||.-..++++.+. ||.+.|.++.|-| +++++++|+.
T Consensus 36 ~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAg 115 (758)
T KOG1310|consen 36 WLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAG 115 (758)
T ss_pred HHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccC
Confidence 444566678899999999999999999999999999999999999888888875 8999999999998 5669999999
Q ss_pred CCEEEEEECCC----------CCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCC
Q 000251 333 DCIIRVWRLPD----------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 402 (1784)
Q Consensus 333 DGtIrVWDl~t----------gk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~ 402 (1784)
|..|+|+|+.. ...++.+..|...|..|+..|++. +.+.+++.||+|+-+|++.......-.
T Consensus 116 Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P--htfwsasEDGtirQyDiREph~c~p~~------ 187 (758)
T KOG1310|consen 116 DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP--HTFWSASEDGTIRQYDIREPHVCNPDE------ 187 (758)
T ss_pred cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC--ceEEEecCCcceeeecccCCccCCccc------
Confidence 99999999974 134566778999999999999875 489999999999999998643211100
Q ss_pred cccCCCCCCCCCCCCCCCceEEEEECCC-CCEEEEeeCCceEEEEcCC
Q 000251 403 AVAGRNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNAC 449 (1784)
Q Consensus 403 ~~~g~~~~~~~s~~~h~~~V~sLafSpd-G~~LasGs~DG~IrVWDl~ 449 (1784)
..........+.--...|++.+|. ..+|++|+.|-.+++||.+
T Consensus 188 ----~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 188 ----DCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred ----cccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 000000111122245679999995 4789999999999999954
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-15 Score=181.63 Aligned_cols=276 Identities=13% Similarity=0.192 Sum_probs=213.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccc
Q 000251 314 DITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSP 393 (1784)
Q Consensus 314 ~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~ 393 (1784)
.|..++|-|||..|+.+.. ..+.|||...|..+.++++|...|+|++|+.+|+ .+++|+.|..|.+|...-...+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk---rFASG~aDK~VI~W~~klEG~L- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK---RFASGSADKSVIIWTSKLEGIL- 88 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCc---eeccCCCceeEEEeccccccee-
Confidence 7999999999998877754 4799999999999999999999999999999998 9999999999999976432211
Q ss_pred eeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCc
Q 000251 394 RIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDV 473 (1784)
Q Consensus 394 ~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V 473 (1784)
...|+..|.|+.|+|-...|++++-. ..-+|...... +. -......|
T Consensus 89 ---------------------kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~----------V~-K~kss~R~ 135 (1081)
T KOG1538|consen 89 ---------------------KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS----------VS-KHKSSSRI 135 (1081)
T ss_pred ---------------------eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhh----------HH-hhhhheeE
Confidence 12488899999999999889888754 35688774311 11 11224467
Q ss_pred eEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCC
Q 000251 474 NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQ 553 (1784)
Q Consensus 474 ~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~ 553 (1784)
.+.+|..+| .+|+.|-.+|+|.|-+-....
T Consensus 136 ~~CsWtnDG--------------------------qylalG~~nGTIsiRNk~gEe------------------------ 165 (1081)
T KOG1538|consen 136 ICCSWTNDG--------------------------QYLALGMFNGTISIRNKNGEE------------------------ 165 (1081)
T ss_pred EEeeecCCC--------------------------cEEEEeccCceEEeecCCCCc------------------------
Confidence 788898887 799999999999987433211
Q ss_pred CCCCCCceeccCCCCCeeEEEEcCCC-----CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEE
Q 000251 554 PPRGGPRQRILPTPRGVNMIVWSLDN-----RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628 (1784)
Q Consensus 554 ~~~~~~~~~l~~h~~~VtsVafSPDG-----~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSg 628 (1784)
...+.+.-+...+|.+++|+|.. ..+++.....++.+|.+ +|+.+..-+.-.-.-.|+.+.+ ++.+++.|
T Consensus 166 ---k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~-NGEy~LiG 240 (1081)
T KOG1538|consen 166 ---KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFT-NGEYILLG 240 (1081)
T ss_pred ---ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheecc-CCcEEEEc
Confidence 11222333466789999999864 46777888888888887 4555542222222346888888 77788889
Q ss_pred eCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000251 629 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 683 (1784)
Q Consensus 629 s~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~s 683 (1784)
|.|+.+.+|.- .|..+.++......|+.++..|++++++.|+.||+|-.|++..
T Consensus 241 Gsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 241 GSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred cCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 99999999975 7888888877777899999999999999999999999998754
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.6e-16 Score=173.80 Aligned_cols=276 Identities=15% Similarity=0.323 Sum_probs=201.7
Q ss_pred cCCCCEEEEEECCCC----CEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCEEEEEECC
Q 000251 268 GHRNAVYCAIFDRSG----RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNN-ALVASASNDCIIRVWRLP 342 (1784)
Q Consensus 268 GH~~~Vt~VaFSPDG----~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg-~lLASGS~DGtIrVWDl~ 342 (1784)
.|....+.++|+-|- -+||.|+.-|.|+|.|+.++++...+.+|...|..|.|.|+. ++|++++.|..|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 478888999998653 478999999999999999999999999999999999999975 689999999999999999
Q ss_pred CCCeeEEe---cCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCC--ccc------CCCCCC
Q 000251 343 DGLPISVL---RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD--AVA------GRNMAP 411 (1784)
Q Consensus 343 tgk~i~~L---~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~--~~~------g~~~~~ 411 (1784)
+..++..+ .+|.+.|.++.|++++. +|++++.|.+|++|++...++...+....+-. ... ...+..
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd---~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGD---RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCC---eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 99999887 47999999999999997 99999999999999998655433332110000 000 000111
Q ss_pred CCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCC-----CCCCCCcceeeecCCCCCceEEEEccCccccc
Q 000251 412 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTD-----DSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 486 (1784)
Q Consensus 412 ~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~-----~s~~~~~~i~~l~gH~~~V~sLafSpdglas~ 486 (1784)
..+...|...|-|+.|- |.++++-+-++.|..|........ ........+..+......|+-|.|.-+.
T Consensus 244 fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~---- 317 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP---- 317 (385)
T ss_pred ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH----
Confidence 12445677778888885 578999888999999987221110 0011122233444555667777665332
Q ss_pred ccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCC
Q 000251 487 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 566 (1784)
Q Consensus 487 ~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 566 (1784)
..+.||.|...|.|.+||++..... ..........
T Consensus 318 --------------------~~~~la~gnq~g~v~vwdL~~~ep~-------------------------~~ttl~~s~~ 352 (385)
T KOG1034|consen 318 --------------------WQKMLALGNQSGKVYVWDLDNNEPP-------------------------KCTTLTHSKS 352 (385)
T ss_pred --------------------HHHHHhhccCCCcEEEEECCCCCCc-------------------------cCceEEeccc
Confidence 1368999999999999999963311 0011111123
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEECC
Q 000251 567 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAA 597 (1784)
Q Consensus 567 ~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~ 597 (1784)
...|...+||.||.+|+..+.|+.|.-||..
T Consensus 353 ~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 353 GSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 3568899999999999999999999999863
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-15 Score=168.95 Aligned_cols=287 Identities=19% Similarity=0.247 Sum_probs=205.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEECCCC-------Cee-----EEec-CCCCceEEEEecCC----CCccEEEEEEeC
Q 000251 315 ITDLAVSSNNALVASASNDCIIRVWRLPDG-------LPI-----SVLR-GHTAAVTAIAFSPR----PGSVYQLLSSSD 377 (1784)
Q Consensus 315 VtsLafSpDg~lLASGS~DGtIrVWDl~tg-------k~i-----~~L~-gH~~~VtsLafSPd----g~~~~~LaSgs~ 377 (1784)
...+.|+|||..|++-+.|..+.+|++... ..+ ..++ .....|...+|-+. .....++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 345789999999999999999999998531 110 1111 12356777777631 112238999999
Q ss_pred CCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCC
Q 000251 378 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 457 (1784)
Q Consensus 378 DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~ 457 (1784)
+.-|.+||.-+|++...+..-...+ .-....+++|+|||..|++|. ...|+|||+..+......
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~d---------------e~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQD---------------EYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPV 195 (406)
T ss_pred cCceeeeeccccccccchhhhhhHH---------------hhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcc
Confidence 9999999999998665543211111 112356899999999999875 578999999433211110
Q ss_pred CCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccc
Q 000251 458 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 537 (1784)
Q Consensus 458 ~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w 537 (1784)
.+ .....-.+..+.|.+++|+|.. ...++.|+-..++-|+.-..
T Consensus 196 y~-t~~~~k~gq~giisc~a~sP~~-------------------------~~~~a~gsY~q~~giy~~~~---------- 239 (406)
T KOG2919|consen 196 YT-TVTKGKFGQKGIISCFAFSPMD-------------------------SKTLAVGSYGQRVGIYNDDG---------- 239 (406)
T ss_pred hh-hhhcccccccceeeeeeccCCC-------------------------CcceeeecccceeeeEecCC----------
Confidence 00 0011123446788899999865 25788888888888875542
Q ss_pred cccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEECCC-CceEEEEecCCC-CeEE
Q 000251 538 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAAD-GSLVHSLTGHTE-STYV 614 (1784)
Q Consensus 538 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs-~DGsI~VWDl~t-gklv~~L~gH~~-~Vts 614 (1784)
..++..+.+|.++|+.++|.++|..|++|. .|-.|..||++. +.++..|..|.+ .-..
T Consensus 240 -------------------~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQR 300 (406)
T KOG2919|consen 240 -------------------RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQR 300 (406)
T ss_pred -------------------CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccce
Confidence 345667778999999999999999999987 467899999976 566777777765 3334
Q ss_pred EEE--ecCCCcEEEEEeCCCcEEEEeCCC-CceEEEEeccCcceEEEEEcCCCCEEEEEeCC
Q 000251 615 LDV--HPFNPRIAMSAGYDGKTIVWDIWE-GIPIRIYEISRFRLVDGKFSPDGASIILSDDV 673 (1784)
Q Consensus 615 Laf--SPdd~~lLaSgs~DG~IrIWDl~t-G~~l~tl~~~~~~ItslafSPDGk~LAsgs~D 673 (1784)
|.| .| .+.+|++|+.||.|++||+.+ |..+..+..+..-+..++++|--.++|+++..
T Consensus 301 I~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 301 ILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred EEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 444 46 678999999999999999998 78788887778888999999998888877653
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-15 Score=172.60 Aligned_cols=294 Identities=18% Similarity=0.192 Sum_probs=198.5
Q ss_pred cceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECC--------C--------CeEEEEEecCCCCeEEEEEcC
Q 000251 259 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME--------T--------AYCLASCRGHEGDITDLAVSS 322 (1784)
Q Consensus 259 ~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~--------T--------gk~l~tL~gH~~~VtsLafSp 322 (1784)
+...+..|.+|..+|++|.|+|+|..||+|+++|.|.+|-.. + ......+++|...|..++|+|
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence 456678899999999999999999999999999999999765 3 345567889999999999999
Q ss_pred CCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCC
Q 000251 323 NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 402 (1784)
Q Consensus 323 Dg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~ 402 (1784)
++.++++++.|..+++||+..|..+..+..|...|..++|.|-++ ++++-+.|...+.+.+...+.+..+.......
T Consensus 134 d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q---yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~ 210 (434)
T KOG1009|consen 134 DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ---YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPA 210 (434)
T ss_pred CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhh---hhhhhccCcccceeeeeeeeeeeeeeeeEeee
Confidence 999999999999999999999999999999999999999999887 89999999888887776655444432100000
Q ss_pred cccCCCCCCC---CCCCCCCCceEEEEECCCCCEEEEeeC----Cce-----EEEEcCCCCCCCCCCCCCcceeeecCCC
Q 000251 403 AVAGRNMAPS---SSAGPQSHQIFCCAFNANGTVFVTGSS----DTL-----ARVWNACKPNTDDSDQPNHEIDVLSGHE 470 (1784)
Q Consensus 403 ~~~g~~~~~~---~s~~~h~~~V~sLafSpdG~~LasGs~----DG~-----IrVWDl~tg~~~~s~~~~~~i~~l~gH~ 470 (1784)
.......... ........-...++|+|+|.+|++... .+. .++|+-. ...+++..+.+-.
T Consensus 211 ~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk--------~l~rP~~~lp~~~ 282 (434)
T KOG1009|consen 211 KAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRK--------DLKRPAARLPSPK 282 (434)
T ss_pred cccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccc--------cccCceeecCCCC
Confidence 0000000000 000111223557899999999988642 111 1222221 1122233333333
Q ss_pred CCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCC
Q 000251 471 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 550 (1784)
Q Consensus 471 ~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~ 550 (1784)
..+..+.|+|- .|.++...
T Consensus 283 k~~lavr~~pV----------------------------------------y~elrp~~--------------------- 301 (434)
T KOG1009|consen 283 KPALAVRFSPV----------------------------------------YYELRPLS--------------------- 301 (434)
T ss_pred cceEEEEeeee----------------------------------------EEEecccc---------------------
Confidence 34444444431 12111000
Q ss_pred CCCCCCCCCceeccCCCCCeeEEEEc-CCCCEEEEEecCCeEEEEECCCCceEEEEe-cCCCCeEEEEEecCCCcEEEEE
Q 000251 551 PPQPPRGGPRQRILPTPRGVNMIVWS-LDNRFVLAAIMDCRICVWNAADGSLVHSLT-GHTESTYVLDVHPFNPRIAMSA 628 (1784)
Q Consensus 551 ~~~~~~~~~~~~l~~h~~~VtsVafS-PDG~~LaSgs~DGsI~VWDl~tgklv~~L~-gH~~~VtsLafSPdd~~lLaSg 628 (1784)
.....|+ |-+-.+|.++. ..|+|||.++-.++.... -|-..|+.++|++ ++.+++..
T Consensus 302 -------------------~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vS 360 (434)
T KOG1009|consen 302 -------------------SEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVS 360 (434)
T ss_pred -------------------ccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecC-CCcEEEEe
Confidence 0000111 33444555665 489999999988877654 4788999999999 67777778
Q ss_pred eCCCcEEEEeCCCCceE
Q 000251 629 GYDGKTIVWDIWEGIPI 645 (1784)
Q Consensus 629 s~DG~IrIWDl~tG~~l 645 (1784)
+.||...+-.++..++-
T Consensus 361 S~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 361 STDGFCSLVTFEPWELG 377 (434)
T ss_pred ccCCceEEEEEcchhcc
Confidence 89998888777655443
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7e-16 Score=170.14 Aligned_cols=302 Identities=14% Similarity=0.161 Sum_probs=206.6
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEec-CCCCceEEEEecCCCCccEEEEEEeCCCcEE
Q 000251 304 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 382 (1784)
Q Consensus 304 ~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~-gH~~~VtsLafSPdg~~~~~LaSgs~DGtIr 382 (1784)
+...+++|.+.|+++.|-.+++ |.+|..-|.|++|++++.+.+..+. .|...|+.+...|++ .|.+-+.|+.+.
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d----~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND----SLDTQGRDPLLI 80 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc----chhhcCCCceEE
Confidence 4567789999999999987775 8999999999999999999888888 677889999999975 599999999999
Q ss_pred EEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECC-----CCC----EEEEeeCCc-eEEEEcCCCCC
Q 000251 383 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-----NGT----VFVTGSSDT-LARVWNACKPN 452 (1784)
Q Consensus 383 IWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSp-----dG~----~LasGs~DG-~IrVWDl~tg~ 452 (1784)
+|++..+..+.... -.++++.|.+ .++ .++.-+... .+.+-|.....
T Consensus 81 lw~ia~s~~i~i~S-----------------------i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t 137 (323)
T KOG0322|consen 81 LWTIAYSAFISIHS-----------------------IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT 137 (323)
T ss_pred EEEccCcceEEEee-----------------------eeccccccccceeccCCCcchhheecCCcccchhhhhccCccc
Confidence 99998765443321 1122222322 111 111100000 01111111000
Q ss_pred CCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCc
Q 000251 453 TDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHP 532 (1784)
Q Consensus 453 ~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~ 532 (1784)
.. .-.-..-.+..+.|.+..+.... ...-.+++|-.+|.+.+||+.++...-
T Consensus 138 qv-----~i~dd~~~~Klgsvmc~~~~~~c-----------------------~s~~lllaGyEsghvv~wd~S~~~~~~ 189 (323)
T KOG0322|consen 138 QV-----QIADDSERSKLGSVMCQDKDHAC-----------------------GSTFLLLAGYESGHVVIWDLSTGDKII 189 (323)
T ss_pred ee-----EccCchhccccCceeeeeccccc-----------------------cceEEEEEeccCCeEEEEEccCCceee
Confidence 00 00000011233444444432111 001267789999999999999753111
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCC--CceE--EEEecC
Q 000251 533 KAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD--GSLV--HSLTGH 608 (1784)
Q Consensus 533 ~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~t--gklv--~~L~gH 608 (1784)
. + +...........|..+|.++.|.+.-..=++|+.+..+..|.+.. |.+. ..+.-.
T Consensus 190 ~-----------~--------~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk 250 (323)
T KOG0322|consen 190 Q-----------L--------PQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK 250 (323)
T ss_pred c-----------c--------ccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEec
Confidence 0 0 011223344567889999999988766777888888899998854 3322 122223
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000251 609 TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 681 (1784)
Q Consensus 609 ~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl 681 (1784)
.-.|..+.+-| +++++||+|+|+.|+||...++.++..+..|...|.+++|+||..++|+++.|++|.+|++
T Consensus 251 npGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 251 NPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 34578889989 8899999999999999999999999999999999999999999999999999999999986
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-14 Score=183.02 Aligned_cols=287 Identities=17% Similarity=0.231 Sum_probs=208.9
Q ss_pred CEEEEEECCCC-CeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCC
Q 000251 334 CIIRVWRLPDG-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 412 (1784)
Q Consensus 334 GtIrVWDl~tg-k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~ 412 (1784)
+.+.||++... .+-..+. -...|++++|+|... ++|+.|+.+|.|.+||++.+...... ...
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p--~ll~gG~y~GqV~lWD~~~~~~~~~s--------------~ls 284 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDP--NLLAGGCYNGQVVLWDLRKGSDTPPS--------------GLS 284 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCc--ceEEeeccCceEEEEEccCCCCCCCc--------------ccc
Confidence 47999999876 4444443 568899999999876 48999999999999999987643211 112
Q ss_pred CCCCCCCCceEEEEECCCCC--EEEEeeCCceEEEEcCCCCCCCCCCCCCcce---eeecCCCCCceEEEEccCcccccc
Q 000251 413 SSAGPQSHQIFCCAFNANGT--VFVTGSSDTLARVWNACKPNTDDSDQPNHEI---DVLSGHENDVNYVQFSGCAVASRF 487 (1784)
Q Consensus 413 ~s~~~h~~~V~sLafSpdG~--~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i---~~l~gH~~~V~sLafSpdglas~~ 487 (1784)
.....|...++.+.|..+-. -|++++.||.|..|+++.-............ ..-......++++.|.+.-
T Consensus 285 ~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~----- 359 (555)
T KOG1587|consen 285 ALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD----- 359 (555)
T ss_pred cccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC-----
Confidence 33456888899999977544 4999999999999988654321111110000 0011234467778887653
Q ss_pred cccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCC
Q 000251 488 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 567 (1784)
Q Consensus 488 ~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~ 567 (1784)
+..|+.|+.+|.|..-+-...+.... ...........|.
T Consensus 360 --------------------p~~FiVGTe~G~v~~~~r~g~~~~~~---------------------~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 360 --------------------PNHFIVGTEEGKVYKGCRKGYTPAPE---------------------VSYKGHSTFITHI 398 (555)
T ss_pred --------------------CceEEEEcCCcEEEEEeccCCccccc---------------------ccccccccccccC
Confidence 46899999999987743322110000 0112233556788
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEECC-CCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC--ce
Q 000251 568 RGVNMIVWSLDNRFVLAAIMDCRICVWNAA-DGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG--IP 644 (1784)
Q Consensus 568 ~~VtsVafSPDG~~LaSgs~DGsI~VWDl~-tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG--~~ 644 (1784)
++|.++.++|-+..++..+.|.+|+||... ...++..+..+...|++++|||..+.+++++..||.|.|||+... .+
T Consensus 399 g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred cceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 999999999988877766669999999988 777888888888889999999988899999999999999999654 44
Q ss_pred EEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000251 645 IRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 683 (1784)
Q Consensus 645 l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~s 683 (1784)
+.+...+......+.|++.|+.|++|+..|++.+|++..
T Consensus 479 v~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 479 VLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 555544555667789999999999999999999999964
|
|
| >cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-16 Score=160.86 Aligned_cols=103 Identities=15% Similarity=0.225 Sum_probs=94.8
Q ss_pred CChhhhHHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhh---ccCCCHHHHHHHHHHHH
Q 000251 1667 IDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLEN---NYYRGLEAVKHDIAVML 1743 (1784)
Q Consensus 1667 id~e~r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen---~~Yr~~~~~~~Dv~~i~ 1743 (1784)
|.++++.+|..++.+|.. +..+++|..|++. ..|+|+++|++||||+||++||++ ++|.++++|..||++||
T Consensus 1 ~~~~~~~~c~~il~~l~~----~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~ 75 (109)
T cd05502 1 LSPIDQRKCERLLLELYC----HELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMF 75 (109)
T ss_pred CCHHHHHHHHHHHHHHHh----CCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Confidence 456788899999988855 4778899999887 899999999999999999999999 59999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHhcC
Q 000251 1744 SNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1774 (1784)
Q Consensus 1744 ~Na~~fN~~~s~i~~~a~~l~~~~~~~i~~~ 1774 (1784)
+||..||++++.++++|+.|+++|.++++++
T Consensus 76 ~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 106 (109)
T cd05502 76 KNCYKFNEEDSEVAQAGKELELFFEEQLKEI 106 (109)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998874
|
Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-15 Score=185.94 Aligned_cols=292 Identities=16% Similarity=0.258 Sum_probs=211.4
Q ss_pred CCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecC---CCCeEEEEEcC--CCCEEEEEeCCCEEEEEEC-CC
Q 000251 270 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGH---EGDITDLAVSS--NNALVASASNDCIIRVWRL-PD 343 (1784)
Q Consensus 270 ~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH---~~~VtsLafSp--Dg~lLASGS~DGtIrVWDl-~t 343 (1784)
...-..+.|+|-...++++.+.-.|+|||.+.++++..+..+ ...|+.|.+-. |..+|++|+.||.|+||+- .+
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 334566788998889999987789999999999998877643 45788998875 4558999999999999963 22
Q ss_pred C----CeeEEecCC-------CCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCC
Q 000251 344 G----LPISVLRGH-------TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 412 (1784)
Q Consensus 344 g----k~i~~L~gH-------~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~ 412 (1784)
+ +.+..+.+- .+.=.-+.|....+ +|+++|.-..|+|||+....+...+..
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G---~Ll~tGd~r~IRIWDa~~E~~~~diP~--------------- 1205 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG---HLLVTGDVRSIRIWDAHKEQVVADIPY--------------- 1205 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCC---eEEecCCeeEEEEEecccceeEeeccc---------------
Confidence 2 233322211 11113356766655 777777789999999987765554422
Q ss_pred CCCCCCCCceEEEEECC-CCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCC--ceEEEEccCcccccccc
Q 000251 413 SSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND--VNYVQFSGCAVASRFSL 489 (1784)
Q Consensus 413 ~s~~~h~~~V~sLafSp-dG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~--V~sLafSpdglas~~~~ 489 (1784)
+....|+++.-+. .|+.|++|..||.|++||.+... +...+.....|... |..+.+.+.|+
T Consensus 1206 ----~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~------~ds~v~~~R~h~~~~~Iv~~slq~~G~------ 1269 (1387)
T KOG1517|consen 1206 ----GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP------PDSLVCVYREHNDVEPIVHLSLQRQGL------ 1269 (1387)
T ss_pred ----CCCccceeecccccCCceEEEeecCCceEEeecccCC------ccccceeecccCCcccceeEEeecCCC------
Confidence 1234466665543 57999999999999999998643 23466777888887 99999988773
Q ss_pred cCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCC--C
Q 000251 490 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT--P 567 (1784)
Q Consensus 490 ~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h--~ 567 (1784)
..|++|+.+|.|.+||++..... ......... .
T Consensus 1270 -------------------~elvSgs~~G~I~~~DlR~~~~e--------------------------~~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1270 -------------------GELVSGSQDGDIQLLDLRMSSKE--------------------------TFLTIVAHWEYG 1304 (1387)
T ss_pred -------------------cceeeeccCCeEEEEecccCccc--------------------------ccceeeeccccC
Confidence 47999999999999999952100 000001111 2
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecC-------CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000251 568 RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH-------TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 640 (1784)
Q Consensus 568 ~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH-------~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 640 (1784)
+.++++..++....+|+|+. +.|+||++. |+.+..+..+ .+.+.|++||| -.-++|+|..|.+|.||...
T Consensus 1305 s~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1305 SALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred ccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecC
Confidence 24899999999999999998 899999984 5555544432 35679999999 66788889999999999886
Q ss_pred CCc
Q 000251 641 EGI 643 (1784)
Q Consensus 641 tG~ 643 (1784)
.+.
T Consensus 1382 k~~ 1384 (1387)
T KOG1517|consen 1382 KPR 1384 (1387)
T ss_pred CcC
Confidence 554
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-15 Score=170.54 Aligned_cols=281 Identities=17% Similarity=0.278 Sum_probs=208.1
Q ss_pred CEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcc
Q 000251 325 ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 404 (1784)
Q Consensus 325 ~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~ 404 (1784)
..+|++...|.|++||..+|+.+..++++...+..++|.... ..+.+.+++.||+|++||++......++....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~d-s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~----- 114 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCD-SPHGVISCSSDGTVRLWDIRSQAESARISWTQ----- 114 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCC-CCCeeEEeccCCeEEEEEeecchhhhheeccC-----
Confidence 578889999999999999999999999999999999998863 33589999999999999999877666553211
Q ss_pred cCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeC----CceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEcc
Q 000251 405 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS----DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSG 480 (1784)
Q Consensus 405 ~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~----DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSp 480 (1784)
.......|++..-.++.+++|+. +-.|.+||++..+. + .-.....|...|++|.|.|
T Consensus 115 ------------~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq-----~--l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 115 ------------QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ-----L--LRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred ------------CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccc-----h--hhhhhhhccCcceeEEecC
Confidence 11345677777778888888863 67899999986432 1 2234578999999999999
Q ss_pred CcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCc
Q 000251 481 CAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 560 (1784)
Q Consensus 481 dglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~ 560 (1784)
.. +++|++||.||.|.|||+... .....+
T Consensus 176 ~~-------------------------pnlLlSGSvDGLvnlfD~~~d--------------------------~EeDaL 204 (376)
T KOG1188|consen 176 SD-------------------------PNLLLSGSVDGLVNLFDTKKD--------------------------NEEDAL 204 (376)
T ss_pred CC-------------------------CCeEEeecccceEEeeecCCC--------------------------cchhhH
Confidence 75 589999999999999998841 122344
Q ss_pred eeccCCCCCeeEEEEcCCC-CEEEEEecCCeEEEEECCCCceEEEEecCC----------CCeEEEE-EecCCCcEEEEE
Q 000251 561 QRILPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAADGSLVHSLTGHT----------ESTYVLD-VHPFNPRIAMSA 628 (1784)
Q Consensus 561 ~~l~~h~~~VtsVafSPDG-~~LaSgs~DGsI~VWDl~tgklv~~L~gH~----------~~VtsLa-fSPdd~~lLaSg 628 (1784)
.....+...|.++.|..++ +.|.+-+...+..+|++..+.....+.... .--+-|. .+|.+..+.+.+
T Consensus 205 ~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~ 284 (376)
T KOG1188|consen 205 LHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALA 284 (376)
T ss_pred HHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEe
Confidence 5556677889999998877 458888888999999999987655443210 0001121 235444555555
Q ss_pred eC-CCcEEEEeCC---C---CceEEEEeccCcc-eEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000251 629 GY-DGKTIVWDIW---E---GIPIRIYEISRFR-LVDGKFSPDGASIILSDDVGQLYILNT 681 (1784)
Q Consensus 629 s~-DG~IrIWDl~---t---G~~l~tl~~~~~~-ItslafSPDGk~LAsgs~DG~I~IWdl 681 (1784)
+. -|...++-+. + ++.+..+.+++.. |.++.|.-.+.+|.+|+.||.|.+|..
T Consensus 285 g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 285 GTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 54 5555555432 3 3556667765544 567888888999999999999999996
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-15 Score=166.31 Aligned_cols=279 Identities=20% Similarity=0.272 Sum_probs=198.3
Q ss_pred EEEccCCCCEEEEEECCCC-CEEEEEcCC-------cEEEEEECCC---------CeEEEEEe-cCCCCeEEEEEcCCCC
Q 000251 264 KRVRGHRNAVYCAIFDRSG-RYVITGSDD-------RLVKIWSMET---------AYCLASCR-GHEGDITDLAVSSNNA 325 (1784)
Q Consensus 264 ~tL~GH~~~Vt~VaFSPDG-~~LATGS~D-------GtIkIWDl~T---------gk~l~tL~-gH~~~VtsLafSpDg~ 325 (1784)
+.|..|.+.|+.++-+|.. +.|+|+-.+ ..+.||.+.. .+++..|. .+-+.|.||.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 4577789999999999955 555665331 3578998753 23344444 4567999999999999
Q ss_pred EEEEEeCCCEEEEEECCCCCe-eEEec-----CCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCC
Q 000251 326 LVASASNDCIIRVWRLPDGLP-ISVLR-----GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR 399 (1784)
Q Consensus 326 lLASGS~DGtIrVWDl~tgk~-i~~L~-----gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~ 399 (1784)
.||+-. |..|.+|++..+.. ++.+. +|....++-+|+|.... .-+....|+++..||+++......+
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg--nqv~tt~d~tl~~~D~RT~~~~~sI---- 209 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG--NQVATTSDSTLQFWDLRTMKKNNSI---- 209 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc--ceEEEeCCCcEEEEEccchhhhcch----
Confidence 998876 78999999988765 44332 35667888999994332 2444566899999999987655444
Q ss_pred CCCcccCCCCCCCCCCCCCCCceEEEEECCCCC-EEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEE
Q 000251 400 PSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 478 (1784)
Q Consensus 400 ~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~-~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLaf 478 (1784)
...|...|..+.|+|+.+ +||+++.||.|+|||+++. ..++..+.+|...|+++.|
T Consensus 210 ---------------~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--------k~pv~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 210 ---------------EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--------KFPVQELPGHSHWVWAVRF 266 (370)
T ss_pred ---------------hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--------CccccccCCCceEEEEEEe
Confidence 245788899999999875 6788999999999999864 4578889999999999999
Q ss_pred ccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCC
Q 000251 479 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGG 558 (1784)
Q Consensus 479 Spdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~ 558 (1784)
+|.- ...|++|+.|..|.+|...+-........-...-............+...+
T Consensus 267 n~~h-------------------------dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg 321 (370)
T KOG1007|consen 267 NPEH-------------------------DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDG 321 (370)
T ss_pred cCcc-------------------------ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccc
Confidence 9864 468899999999999987653211111000000000000001111233455
Q ss_pred CceeccCCCCCeeEEEEcCCCCEE-EEEecCCeEEEEECC
Q 000251 559 PRQRILPTPRGVNMIVWSLDNRFV-LAAIMDCRICVWNAA 597 (1784)
Q Consensus 559 ~~~~l~~h~~~VtsVafSPDG~~L-aSgs~DGsI~VWDl~ 597 (1784)
.+.++..|...|.+++||.-..++ |+-+.||++.|=.+.
T Consensus 322 ~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 322 QLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 667888899999999999877664 668999999886653
|
|
| >cd05500 Bromo_BDF1_2_I Bromodomain | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-16 Score=158.28 Aligned_cols=101 Identities=21% Similarity=0.339 Sum_probs=91.6
Q ss_pred CChhhhHHHHHHHHHHHhhhcccccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHH
Q 000251 1667 IDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLS 1744 (1784)
Q Consensus 1667 id~e~r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~ 1744 (1784)
|.++.+..|++++.+|.+ ++.++.|..|++.. ..|+|+++|++||||+||++||+++.|.++++|..||++||+
T Consensus 1 ~t~~~~~~~~~ii~~l~~----~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 76 (103)
T cd05500 1 MTKHQHKFLLSSIRSLKR----LKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVD 76 (103)
T ss_pred CCHHHHHHHHHHHHHHHc----CCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 456778888888888854 67788888888754 789999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHH
Q 000251 1745 NAESYFGRNTDLSTKIKRLSDLVTRTL 1771 (1784)
Q Consensus 1745 Na~~fN~~~s~i~~~a~~l~~~~~~~i 1771 (1784)
||..||++++.++.+|+.|++.|.+.+
T Consensus 77 Na~~yN~~~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 77 NCLTFNGPEHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998753
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-16 Score=162.31 Aligned_cols=98 Identities=15% Similarity=0.323 Sum_probs=89.2
Q ss_pred HHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCcHHHH
Q 000251 1679 FAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLST 1758 (1784)
Q Consensus 1679 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s~i~~ 1758 (1784)
+.++......++.+++|..+++....|+||++|+.||||+||++||++++|+++++|+.||++||+||..||++++.+++
T Consensus 5 l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~ 84 (112)
T cd05511 5 LDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSVYTK 84 (112)
T ss_pred HHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 34444444456788899999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 000251 1759 KIKRLSDLVTRTLSSLKA 1776 (1784)
Q Consensus 1759 ~a~~l~~~~~~~i~~~~~ 1776 (1784)
.|+.|.++|.+.|..++.
T Consensus 85 ~A~~l~~~~~~~~~~~~~ 102 (112)
T cd05511 85 KAKEMLELAEELLAEREE 102 (112)
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 999999999999988754
|
Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-16 Score=157.03 Aligned_cols=93 Identities=13% Similarity=0.314 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCC
Q 000251 1674 KLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRN 1753 (1784)
Q Consensus 1674 kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~ 1753 (1784)
.|..++..|.. +..++.|..|++....|+|+++|+.||||+||++||+++.|+++++|..|+++||+||..||+++
T Consensus 4 ~c~~il~~l~~----~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 4 LCETILDEMEA----HEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHc----CCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45555555543 57788999999888999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHH
Q 000251 1754 TDLSTKIKRLSDLVTRT 1770 (1784)
Q Consensus 1754 s~i~~~a~~l~~~~~~~ 1770 (1784)
+.+++.|..|+++|.+.
T Consensus 80 s~i~~~a~~l~~~f~~~ 96 (97)
T cd05503 80 SEVGRAGHNMRKFFEKR 96 (97)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999864
|
Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-16 Score=159.18 Aligned_cols=101 Identities=15% Similarity=0.209 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhhhc--ccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcC
Q 000251 1674 KLLSAFAKLEQSAN--RVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFG 1751 (1784)
Q Consensus 1674 kl~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~ 1751 (1784)
++..++..+.+... ..+-+++|..++.....|+||.+|+.||||+||++||+++.|.++++|..||+|||.||++||+
T Consensus 5 ~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05516 5 KMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNL 84 (107)
T ss_pred HHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 33444444443322 2334788999999889999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHhcC
Q 000251 1752 RNTDLSTKIKRLSDLVTRTLSSL 1774 (1784)
Q Consensus 1752 ~~s~i~~~a~~l~~~~~~~i~~~ 1774 (1784)
++|.|+.+|..|+++|...++++
T Consensus 85 ~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 85 EGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999988753
|
SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-16 Score=156.99 Aligned_cols=93 Identities=19% Similarity=0.222 Sum_probs=82.1
Q ss_pred HHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCc
Q 000251 1675 LLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNT 1754 (1784)
Q Consensus 1675 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s 1754 (1784)
|.+.+..+++....+.....|..|++....|+|+++|++||||+||++||+++.|.++++|..||++||.||.+||++++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s 81 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDT 81 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 34445555555556777888999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 000251 1755 DLSTKIKRLSDLV 1767 (1784)
Q Consensus 1755 ~i~~~a~~l~~~~ 1767 (1784)
.++++|..|...=
T Consensus 82 ~~~~~A~~L~~~~ 94 (98)
T cd05513 82 IYYKAAKKLLHSG 94 (98)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999997643
|
The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.7e-16 Score=154.76 Aligned_cols=94 Identities=13% Similarity=0.180 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCC
Q 000251 1673 NKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGR 1752 (1784)
Q Consensus 1673 ~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~ 1752 (1784)
.+|-.++..|.. +.+++.|... ....|||+++|++||||+||++||+++.|.++++|+.||+|||+||++||++
T Consensus 5 ~~ce~il~~l~~----~~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~ 78 (102)
T cd05501 5 LKCEFLLLKVYC----MSKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKD 78 (102)
T ss_pred HHHHHHHHHHHh----CcccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 345555555544 2344444332 2478999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHhc
Q 000251 1753 NTDLSTKIKRLSDLVTRTLSS 1773 (1784)
Q Consensus 1753 ~s~i~~~a~~l~~~~~~~i~~ 1773 (1784)
+ ++.++|..|++.|.+.+++
T Consensus 79 ~-~~~~~a~~L~~~Fek~~~~ 98 (102)
T cd05501 79 D-DFGQVGITLEKKFEKNFKE 98 (102)
T ss_pred C-HHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999998865
|
The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-15 Score=169.18 Aligned_cols=286 Identities=13% Similarity=0.183 Sum_probs=195.6
Q ss_pred CEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcC--CCCEEEEEeCCCEEEEEECCCCCeeEEe--cCCC-Cce
Q 000251 283 RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSS--NNALVASASNDCIIRVWRLPDGLPISVL--RGHT-AAV 357 (1784)
Q Consensus 283 ~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSp--Dg~lLASGS~DGtIrVWDl~tgk~i~~L--~gH~-~~V 357 (1784)
..+|++-..|.|+|||..+|+.+..++++...+..+.|.. ....+.+|+.||+|++||+++......+ ..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5788888899999999999999999999999999999987 4568999999999999999887655443 4454 455
Q ss_pred EEEEecCCCCccEEEEEEe----CCCcEEEEecCCCcc-cceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECC-CC
Q 000251 358 TAIAFSPRPGSVYQLLSSS----DDGTCRIWDARYSQF-SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NG 431 (1784)
Q Consensus 358 tsLafSPdg~~~~~LaSgs----~DGtIrIWDl~tg~~-l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSp-dG 431 (1784)
.+++..-.+. .+++|. .+-.|.+||++..+. +..+ ...|...|+++.|+| +-
T Consensus 121 ~~ld~nck~~---ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~-------------------~eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 121 ICLDLNCKKN---IIACGTELTRSDASVVLWDVRSEQQLLRQL-------------------NESHNDDVTQLRFHPSDP 178 (376)
T ss_pred eEeeccCcCC---eEEeccccccCceEEEEEEeccccchhhhh-------------------hhhccCcceeEEecCCCC
Confidence 6666654443 566654 467799999998765 2222 345889999999999 45
Q ss_pred CEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeE
Q 000251 432 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 511 (1784)
Q Consensus 432 ~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~L 511 (1784)
++|++|+.||.|.|||+.... ....+.....|...|..+.|...+. +.|
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~------EeDaL~~viN~~sSI~~igw~~~~y-------------------------krI 227 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDN------EEDALLHVINHGSSIHLIGWLSKKY-------------------------KRI 227 (376)
T ss_pred CeEEeecccceEEeeecCCCc------chhhHHHhhcccceeeeeeeecCCc-------------------------ceE
Confidence 899999999999999996532 1223444556778899999997762 578
Q ss_pred EEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEec-CCe
Q 000251 512 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM-DCR 590 (1784)
Q Consensus 512 VSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~-DGs 590 (1784)
.+-+..++..+|++..+......... . ...........-..-|.+.. .-+..+++.++. -+.
T Consensus 228 ~clTH~Etf~~~ele~~~~~~~~~~~----~------------~~~~d~r~~~~~dY~I~~~~-~~~~~~~~l~g~~~n~ 290 (376)
T KOG1188|consen 228 MCLTHMETFAIYELEDGSEETWLENP----D------------VSADDLRKEDNCDYVINEHS-PGDKDTCALAGTDSNK 290 (376)
T ss_pred EEEEccCceeEEEccCCChhhcccCc----c------------chhhhHHhhhhhhheeeccc-CCCcceEEEeccccCc
Confidence 99999999999999864421111000 0 00000000000111122221 123344444433 455
Q ss_pred EEEEEC---CC---CceEEEEec-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000251 591 ICVWNA---AD---GSLVHSLTG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639 (1784)
Q Consensus 591 I~VWDl---~t---gklv~~L~g-H~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 639 (1784)
..++-+ .+ ++.+..+.| |...|.++.|.. .+.++.|||.||.+.+|..
T Consensus 291 ~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~-~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 291 GTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV-KNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eeEEEeeecccccccCccccccCCcHHHHHHHhhhc-ccceeeccCCCceEEEEec
Confidence 544433 23 344556666 666778888865 6678999999999999986
|
|
| >cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-16 Score=156.53 Aligned_cols=97 Identities=21% Similarity=0.340 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhhh--cccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcC
Q 000251 1674 KLLSAFAKLEQSA--NRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFG 1751 (1784)
Q Consensus 1674 kl~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~ 1751 (1784)
+|...++.+.+.. .+.+-+++|..++.....|+||++|++||||+||++||+++.|+++++|..|+++||.||.+||+
T Consensus 4 ~~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05520 4 PLWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNV 83 (103)
T ss_pred hHHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 3444444444332 23456788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHH
Q 000251 1752 RNTDLSTKIKRLSDLVTRT 1770 (1784)
Q Consensus 1752 ~~s~i~~~a~~l~~~~~~~ 1770 (1784)
+++.++++|..|+++|.++
T Consensus 84 ~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 84 PNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999864
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
Probab=99.64 E-value=6e-16 Score=155.95 Aligned_cols=85 Identities=19% Similarity=0.320 Sum_probs=80.8
Q ss_pred ccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHH
Q 000251 1688 RVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLV 1767 (1784)
Q Consensus 1688 ~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s~i~~~a~~l~~~~ 1767 (1784)
.++-++.|..+++....|+||++|++||||+||++||+++.|.++++|..||++||.||.+||+++|.+++.|..|+++|
T Consensus 20 ~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~yN~~~s~i~~~A~~L~~~~ 99 (105)
T cd05515 20 GRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNEPDSQIYKDALTLQKVL 99 (105)
T ss_pred CCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 000251 1768 TRTLS 1772 (1784)
Q Consensus 1768 ~~~i~ 1772 (1784)
.++.+
T Consensus 100 ~~~~~ 104 (105)
T cd05515 100 LETKR 104 (105)
T ss_pred HHHHc
Confidence 98764
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.3e-16 Score=156.60 Aligned_cols=102 Identities=18% Similarity=0.239 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcC
Q 000251 1672 RNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFG 1751 (1784)
Q Consensus 1672 r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~ 1751 (1784)
|-.|..++.++.. +..+++|..+++....|+||++|++||||+||++||++++|.++++|..||++||+||..||+
T Consensus 5 r~~L~~il~~l~~----~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 80 (112)
T cd05528 5 RLFLRDVLKRLAS----DKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNP 80 (112)
T ss_pred HHHHHHHHHHHHh----CCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCC
Confidence 4445555566543 677899999999999999999999999999999999999999999999999999999999999
Q ss_pred CC----cHHHHHHHHHHHHHHHHHhcCCCC
Q 000251 1752 RN----TDLSTKIKRLSDLVTRTLSSLKAP 1777 (1784)
Q Consensus 1752 ~~----s~i~~~a~~l~~~~~~~i~~~~~~ 1777 (1784)
++ +.|+.+|..|++.|.+.+.+...+
T Consensus 81 ~~s~~~s~i~~~A~~L~~~~~~~~~~~~~~ 110 (112)
T cd05528 81 DRDPADKLIRSRACELRDEVHAMIEAELDP 110 (112)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 95 699999999999999999876544
|
Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver |
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-14 Score=164.06 Aligned_cols=300 Identities=14% Similarity=0.144 Sum_probs=218.7
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECC------CCCeeEEecC-CCCceEEEEecCCCCccEEEEEEeC
Q 000251 305 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP------DGLPISVLRG-HTAAVTAIAFSPRPGSVYQLLSSSD 377 (1784)
Q Consensus 305 l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~------tgk~i~~L~g-H~~~VtsLafSPdg~~~~~LaSgs~ 377 (1784)
.+.+.+|.+.|.+|.|+.++++||+|+.|..++||++. +.+++..... |...|.|++|...+. .|++|+.
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~---~~~SG~~ 125 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR---FLYSGER 125 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe---eEecCCC
Confidence 34467899999999999999999999999999999984 4467766654 458999999988765 8999999
Q ss_pred CCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCC
Q 000251 378 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 457 (1784)
Q Consensus 378 DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~ 457 (1784)
+|+|.+-|+++.+.+..+. .....+.|+.+..+|..+.|++.+.++.|.+||.+...
T Consensus 126 ~~~VI~HDiEt~qsi~V~~------------------~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~----- 182 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVAN------------------ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ----- 182 (609)
T ss_pred cceeEeeecccceeeeeec------------------ccCcccceeecccCCCCceEEEEecCceEEEEeccCCC-----
Confidence 9999999999877554432 11234579999999999999999999999999997532
Q ss_pred CCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccc
Q 000251 458 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 537 (1784)
Q Consensus 458 ~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w 537 (1784)
.++.+ ..+.........+.|+|.. +.+|++.+..|-+-+||.+.....
T Consensus 183 ~~~~~-~~~AN~~~~F~t~~F~P~~-------------------------P~Li~~~~~~~G~~~~D~R~~~~~------ 230 (609)
T KOG4227|consen 183 NPISL-VLPANSGKNFYTAEFHPET-------------------------PALILVNSETGGPNVFDRRMQARP------ 230 (609)
T ss_pred CCCce-eeecCCCccceeeeecCCC-------------------------ceeEEeccccCCCCceeeccccch------
Confidence 12222 2233344456677787764 468899999999999999853210
Q ss_pred cccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceE-EEEecCC-------
Q 000251 538 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV-HSLTGHT------- 609 (1784)
Q Consensus 538 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv-~~L~gH~------- 609 (1784)
.+. ......+......-..+.|+|.|..|++.-....-.+||+.+..+. ..+. |.
T Consensus 231 --~~~--------------~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~ 293 (609)
T KOG4227|consen 231 --VYQ--------------RSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNI 293 (609)
T ss_pred --HHh--------------hhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceee
Confidence 000 0000111111223456789999999988766666677888765443 2332 22
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC----------C-------------ceEEEEeccCcceEEEEEcCCCCE
Q 000251 610 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE----------G-------------IPIRIYEISRFRLVDGKFSPDGAS 666 (1784)
Q Consensus 610 ~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t----------G-------------~~l~tl~~~~~~ItslafSPDGk~ 666 (1784)
..+.+++|. +.+-+++|+.+-.|+||.+.. | ..+..+.+|..-+..+.|+|-..+
T Consensus 294 ~T~KS~~F~--~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~ 371 (609)
T KOG4227|consen 294 KTIKSMTFI--DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNL 371 (609)
T ss_pred eeeeeeeee--cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcce
Confidence 245667775 445688999999999998752 1 234567788888889999999999
Q ss_pred EEEEeCCCeEEEEEC
Q 000251 667 IILSDDVGQLYILNT 681 (1784)
Q Consensus 667 LAsgs~DG~I~IWdl 681 (1784)
|++++-...++||.-
T Consensus 372 l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 372 LVSSGVENSFKLWSD 386 (609)
T ss_pred Eeccchhhheecccc
Confidence 999999999999974
|
|
| >cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-16 Score=154.88 Aligned_cols=89 Identities=18% Similarity=0.310 Sum_probs=81.0
Q ss_pred HHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCcHHH
Q 000251 1678 AFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLS 1757 (1784)
Q Consensus 1678 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s~i~ 1757 (1784)
.|..++.....+..++.|..+++....|+|+++|+.||||+||++||+++.|+++++|..||++||.||..||++++.++
T Consensus 5 ~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~ 84 (98)
T cd05512 5 LLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDTIFY 84 (98)
T ss_pred HHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 44455555555788899999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 000251 1758 TKIKRLSDL 1766 (1784)
Q Consensus 1758 ~~a~~l~~~ 1766 (1784)
+.|..|++.
T Consensus 85 ~~A~~l~~~ 93 (98)
T cd05512 85 RAAVRLRDQ 93 (98)
T ss_pred HHHHHHHHh
Confidence 999999875
|
BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05499 Bromo_BDF1_2_II Bromodomain | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.3e-16 Score=154.86 Aligned_cols=98 Identities=13% Similarity=0.227 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhc
Q 000251 1673 NKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1750 (1784)
Q Consensus 1673 ~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN 1750 (1784)
..|..++.+|.+.. .++.+++|..|++.. ..|+|+++|++||||+||++||+++.|+++++|..|+++||.||..||
T Consensus 3 ~~c~~Il~~l~~~~-~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 3 KFCEEVLKELMKPK-HSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred HHHHHHHHHHHccc-CCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45667777775532 245678998888776 899999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHH
Q 000251 1751 GRNTDLSTKIKRLSDLVTRTL 1771 (1784)
Q Consensus 1751 ~~~s~i~~~a~~l~~~~~~~i 1771 (1784)
++++.++.+|+.|++.|.+++
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999998763
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.2e-16 Score=154.56 Aligned_cols=83 Identities=18% Similarity=0.335 Sum_probs=78.2
Q ss_pred ccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHH
Q 000251 1688 RVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLV 1767 (1784)
Q Consensus 1688 ~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s~i~~~a~~l~~~~ 1767 (1784)
+..-+..|..+++....|+||++|++||||+||++||++++|.++++|..||++||.||.+||+++|.+++.|..|+++|
T Consensus 20 gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~l~~~f 99 (103)
T cd05517 20 GRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNEPGSQVYKDANAIKKIF 99 (103)
T ss_pred CCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 45556888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 000251 1768 TRT 1770 (1784)
Q Consensus 1768 ~~~ 1770 (1784)
..+
T Consensus 100 ~~~ 102 (103)
T cd05517 100 TAK 102 (103)
T ss_pred Hhc
Confidence 753
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.7e-14 Score=178.72 Aligned_cols=326 Identities=16% Similarity=0.201 Sum_probs=219.1
Q ss_pred cccccccceEEEEEccCCCCEEEEEECCCC-CEEEEEcCCcEEEEEECCC-------CeEEEEEecCCCCeEEEEEcCCC
Q 000251 253 PSTMVQKMQNIKRVRGHRNAVYCAIFDRSG-RYVITGSDDRLVKIWSMET-------AYCLASCRGHEGDITDLAVSSNN 324 (1784)
Q Consensus 253 ~~~~~~~~k~l~tL~GH~~~Vt~VaFSPDG-~~LATGS~DGtIkIWDl~T-------gk~l~tL~gH~~~VtsLafSpDg 324 (1784)
+..+-.++..+.+|..|...|..++.++.. .+++|||.||+|+||+... .+...++..-...+.++.+.+.+
T Consensus 1031 ~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1031 PPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG 1110 (1431)
T ss_pred CCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC
Confidence 334557889999999999999999988755 9999999999999999743 22333444457889999999999
Q ss_pred CEEEEEeCCCEEEEEECCC--CC-----eeEEe--cCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCccccee
Q 000251 325 ALVASASNDCIIRVWRLPD--GL-----PISVL--RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 395 (1784)
Q Consensus 325 ~lLASGS~DGtIrVWDl~t--gk-----~i~~L--~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i 395 (1784)
..+|+++.||.|++.++.. .. +.+.. ......|..-+|...... +.|+.+..-+.|..||++......++
T Consensus 1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S-~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS-HVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccc-eeEEEEEeccceEEecchhhhhHHhh
Confidence 9999999999999999865 21 11111 222234455566655444 47888889999999999877655544
Q ss_pred ecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceE
Q 000251 396 YIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNY 475 (1784)
Q Consensus 396 ~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~s 475 (1784)
. .....+.|++++.+|.+.++++|+..|.+.+||++-.... ...-..+..++..
T Consensus 1190 k------------------~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i--------~sw~~P~~~~i~~ 1243 (1431)
T KOG1240|consen 1190 K------------------NQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPI--------LSWEHPARAPIRH 1243 (1431)
T ss_pred h------------------cCccccceeEEEecCCceEEEEecCCceEEEEEeecCcee--------ecccCcccCCcce
Confidence 2 2335677999999999999999999999999999742211 1112234467777
Q ss_pred EEEccCcccccccccCCCCCCCCCccccccccCCeEE-EEe-CCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCC
Q 000251 476 VQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIV-TCS-RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQ 553 (1784)
Q Consensus 476 LafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LV-SgS-~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~ 553 (1784)
+..+|-.- .....+ +++ ..+.|.+|++.++.. ....|.. ...+.+...
T Consensus 1244 v~~~~~~~-----------------------~~S~~vs~~~~~~nevs~wn~~~g~~--~~vl~~s-----~~~p~ls~~ 1293 (1431)
T KOG1240|consen 1244 VWLCPTYP-----------------------QESVSVSAGSSSNNEVSTWNMETGLR--QTVLWAS-----DGAPILSYA 1293 (1431)
T ss_pred EEeeccCC-----------------------CCceEEEecccCCCceeeeecccCcc--eEEEEcC-----CCCcchhhh
Confidence 77765420 002333 344 578899999998642 2233332 111111111
Q ss_pred CCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceE-------------------------------
Q 000251 554 PPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV------------------------------- 602 (1784)
Q Consensus 554 ~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv------------------------------- 602 (1784)
.+... ....+.-.....++..-+.++++|+.|..|+.||.......
T Consensus 1294 ~Ps~~---~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e 1370 (1431)
T KOG1240|consen 1294 LPSND---ARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDE 1370 (1431)
T ss_pred ccccc---CCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchh
Confidence 11110 00122223334445556678999999999999997542100
Q ss_pred -----------------EEE--------ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000251 603 -----------------HSL--------TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638 (1784)
Q Consensus 603 -----------------~~L--------~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD 638 (1784)
..+ ..|...|+++++......+|++++.||.|+||.
T Consensus 1371 ~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1371 FIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000 247788999998876677999999999999993
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.7e-14 Score=174.84 Aligned_cols=285 Identities=16% Similarity=0.204 Sum_probs=199.3
Q ss_pred CcEEEEEECCCC-eEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCEEEEEECCCCCe--eEE----ecCCCCceEEEEe
Q 000251 291 DRLVKIWSMETA-YCLASCRGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPDGLP--ISV----LRGHTAAVTAIAF 362 (1784)
Q Consensus 291 DGtIkIWDl~Tg-k~l~tL~gH~~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~tgk~--i~~----L~gH~~~VtsLaf 362 (1784)
++.+.||++... ..-..+. -...|+|++|+| +..+||.|+.+|.|.+||+..+.. ... ...|..+|+.+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 358999999876 3333443 567899999999 566888999999999999987754 222 2468899999999
Q ss_pred cCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECC-CCCEEEEeeCCc
Q 000251 363 SPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDT 441 (1784)
Q Consensus 363 SPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSp-dG~~LasGs~DG 441 (1784)
..+..+ .-|++++.||.|+.|+++.-........ ................+++++|.+ +-..|++|+..|
T Consensus 300 ~~~~~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~--------~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G 370 (555)
T KOG1587|consen 300 LQNEHN-TEFFSLSSDGSICSWDTDMLSLPVEGLL--------LESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG 370 (555)
T ss_pred eccCCC-CceEEEecCCcEeeeeccccccchhhcc--------cccccccccccccccceeeEeeccCCCceEEEEcCCc
Confidence 887654 4699999999999998775443221111 000011111223456789999988 457899999999
Q ss_pred eEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEE
Q 000251 442 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 521 (1784)
Q Consensus 442 ~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIr 521 (1784)
.|..-+-..... ......+....+..|.+.|.++.++|-+ +..|++++ |.+++
T Consensus 371 ~v~~~~r~g~~~-~~~~~~~~~~~~~~h~g~v~~v~~nPF~-------------------------~k~fls~g-DW~vr 423 (555)
T KOG1587|consen 371 KVYKGCRKGYTP-APEVSYKGHSTFITHIGPVYAVSRNPFY-------------------------PKNFLSVG-DWTVR 423 (555)
T ss_pred EEEEEeccCCcc-cccccccccccccccCcceEeeecCCCc-------------------------cceeeeec-cceeE
Confidence 887733322111 1101123345677889999999999865 35666666 99999
Q ss_pred EEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC-EEEEEecCCeEEEEECCC--
Q 000251 522 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWNAAD-- 598 (1784)
Q Consensus 522 IWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~-~LaSgs~DGsI~VWDl~t-- 598 (1784)
||.... ...++..+..+...|++++|||-.. .++++..||.|.|||+..
T Consensus 424 iWs~~~----------------------------~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 424 IWSEDV----------------------------IASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred eccccC----------------------------CCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence 997652 1233344445566699999999775 556677899999999965
Q ss_pred CceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000251 599 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 641 (1784)
Q Consensus 599 gklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t 641 (1784)
-.++....-+....+.+.|++ .+++|+.|...|.|.+|++..
T Consensus 476 ~~Pv~s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 476 EEPVLSQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCcccccccccccceeecCC-CCcEEEEecCCCcEEEEEcCc
Confidence 344555555556667777877 789999999999999999954
|
|
| >smart00297 BROMO bromo domain | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-15 Score=153.55 Aligned_cols=104 Identities=22% Similarity=0.383 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhc
Q 000251 1671 NRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1750 (1784)
Q Consensus 1671 ~r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN 1750 (1784)
...++...+..+......++.++.|..++.....|+|+++|+.||||++|++||+++.|+++++|..|+++||.||.+||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n 83 (107)
T smart00297 4 LQKKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYN 83 (107)
T ss_pred hHHHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34566666666666666678889999999988899999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhcC
Q 000251 1751 GRNTDLSTKIKRLSDLVTRTLSSL 1774 (1784)
Q Consensus 1751 ~~~s~i~~~a~~l~~~~~~~i~~~ 1774 (1784)
++++.+++.|+.|.+.|.+.++++
T Consensus 84 ~~~s~~~~~a~~l~~~f~~~~~~~ 107 (107)
T smart00297 84 GPDSEVYKDAKKLEKFFEKKLREL 107 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999998753
|
|
| >cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-15 Score=151.84 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=76.3
Q ss_pred cccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHH
Q 000251 1689 VQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVT 1768 (1784)
Q Consensus 1689 ~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s~i~~~a~~l~~~~~ 1768 (1784)
.+-+-.|..++.....|+||++|+.||||+||++||+++.|.++++|..|+++||.||.+||+++|.|+++|..|+++|.
T Consensus 21 r~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~~ 100 (103)
T cd05518 21 RRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEEGSQVYEDANILEKVLK 100 (103)
T ss_pred CcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 34455777888889999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HH
Q 000251 1769 RT 1770 (1784)
Q Consensus 1769 ~~ 1770 (1784)
.+
T Consensus 101 ~~ 102 (103)
T cd05518 101 EK 102 (103)
T ss_pred hc
Confidence 64
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-15 Score=196.60 Aligned_cols=103 Identities=17% Similarity=0.330 Sum_probs=90.0
Q ss_pred hhhHHHHHHHHHHHhhhcccccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhh
Q 000251 1670 DNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAE 1747 (1784)
Q Consensus 1670 e~r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~ 1747 (1784)
+.-..|.++|..|+ .+...|+|..||++. .-||||+||++||||+|||+||++++|+++.+|..||||||.||+
T Consensus 222 ~~lk~C~~iLk~l~----~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm 297 (640)
T KOG1474|consen 222 ELLKQCLSILKRLM----KHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCM 297 (640)
T ss_pred HHHHHHHHHHHHHH----hccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHH
Confidence 34444555555554 456669999999865 459999999999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHhcCCC
Q 000251 1748 SYFGRNTDLSTKIKRLSDLVTRTLSSLKA 1776 (1784)
Q Consensus 1748 ~fN~~~s~i~~~a~~l~~~~~~~i~~~~~ 1776 (1784)
+||.++++|+.||+.|.+.|......++.
T Consensus 298 ~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~ 326 (640)
T KOG1474|consen 298 TYNPEGSDVYAMAKKLQEVFEERWASMPL 326 (640)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999888665
|
|
| >cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-15 Score=154.35 Aligned_cols=104 Identities=12% Similarity=0.222 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhhh--cccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhc
Q 000251 1673 NKLLSAFAKLEQSA--NRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1750 (1784)
Q Consensus 1673 ~kl~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN 1750 (1784)
..+..++..+.+.. ....-+..|..++.....|+||++|++||||+||++||+++.|.++++|..||++||+||.+||
T Consensus 5 ~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN 84 (113)
T cd05524 5 AVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAYY 84 (113)
T ss_pred HHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34555555554322 1222334677788888999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhcCCC
Q 000251 1751 GRNTDLSTKIKRLSDLVTRTLSSLKA 1776 (1784)
Q Consensus 1751 ~~~s~i~~~a~~l~~~~~~~i~~~~~ 1776 (1784)
+++|.+++.|..|+++|.+.++++..
T Consensus 85 ~~~s~~~~~A~~L~~~f~~~~~~~~~ 110 (113)
T cd05524 85 KPDSPEHKDACKLWELFLSARNEVLS 110 (113)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999887654
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.2e-14 Score=161.80 Aligned_cols=228 Identities=22% Similarity=0.357 Sum_probs=168.3
Q ss_pred EEecCCCCeEEEEEcC-CCCEEEEEeCCCEEEEEECCCC-------CeeEEecCCCCceEEEEecCCCCccEEEEEEeCC
Q 000251 307 SCRGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPDG-------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD 378 (1784)
Q Consensus 307 tL~gH~~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~tg-------k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~D 378 (1784)
.+.||.++|.+++|+| +...||+||.|.+|.||.+..+ +++..|.+|...|--|+|+|... +.|++++.|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~--NVLlsag~D 153 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP--NVLLSAGSD 153 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch--hhHhhccCC
Confidence 3569999999999999 5568999999999999998754 46778899999999999999865 489999999
Q ss_pred CcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCC
Q 000251 379 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 458 (1784)
Q Consensus 379 GtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~ 458 (1784)
.+|.+|++.+|..+-++ .|...|++++|+.||.+|++.+.|..|+|||.++++
T Consensus 154 n~v~iWnv~tgeali~l---------------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~------ 206 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITL---------------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT------ 206 (472)
T ss_pred ceEEEEeccCCceeeec---------------------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCc------
Confidence 99999999999755443 278889999999999999999999999999998754
Q ss_pred CCcceeeecCCCCC-ceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEE---eCCCcEEEEeCCCCCCCccc
Q 000251 459 PNHEIDVLSGHEND-VNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGSAIIWIPRSRRSHPKA 534 (1784)
Q Consensus 459 ~~~~i~~l~gH~~~-V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSg---S~DGtIrIWDl~t~~~~~~~ 534 (1784)
.+....+|.+. -.-+.|..++ ..+.|| ..+.++-+||......
T Consensus 207 ---~v~e~~~heG~k~~Raifl~~g--------------------------~i~tTGfsr~seRq~aLwdp~nl~e---- 253 (472)
T KOG0303|consen 207 ---VVSEGVAHEGAKPARAIFLASG--------------------------KIFTTGFSRMSERQIALWDPNNLEE---- 253 (472)
T ss_pred ---EeeecccccCCCcceeEEeccC--------------------------ceeeeccccccccceeccCcccccC----
Confidence 34444566553 2233455444 333333 3478899998875220
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE-EecCCeEEEEECCCCce-EEEEec--CCC
Q 000251 535 ARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA-AIMDCRICVWNAADGSL-VHSLTG--HTE 610 (1784)
Q Consensus 535 ~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS-gs~DGsI~VWDl~tgkl-v~~L~g--H~~ 610 (1784)
...........+|..--|.+|.+.|.. |-.|+.|+.|.+.+-.+ ++-|.. ...
T Consensus 254 -----------------------P~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~e 310 (472)
T KOG0303|consen 254 -----------------------PIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKE 310 (472)
T ss_pred -----------------------cceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCC
Confidence 011222345567888888999988755 55799999999976553 333321 223
Q ss_pred CeEEEEEec
Q 000251 611 STYVLDVHP 619 (1784)
Q Consensus 611 ~VtsLafSP 619 (1784)
+-..+.|-|
T Consensus 311 pQRG~g~mP 319 (472)
T KOG0303|consen 311 PQRGMGFMP 319 (472)
T ss_pred ccccccccc
Confidence 345566666
|
|
| >cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-15 Score=151.23 Aligned_cols=83 Identities=17% Similarity=0.231 Sum_probs=78.5
Q ss_pred ccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHH
Q 000251 1688 RVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLV 1767 (1784)
Q Consensus 1688 ~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s~i~~~a~~l~~~~ 1767 (1784)
+..-++.|..++.....|+||++|++||||+||++||+++.|.++.+|..|+++||.||.+||++++.++.+|..|++.|
T Consensus 20 ~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~f 99 (103)
T cd05519 20 GRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYNQEGSIVYEDAVEMEKAF 99 (103)
T ss_pred CCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 44556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 000251 1768 TRT 1770 (1784)
Q Consensus 1768 ~~~ 1770 (1784)
.++
T Consensus 100 ~~~ 102 (103)
T cd05519 100 KKK 102 (103)
T ss_pred HHh
Confidence 875
|
SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-13 Score=172.80 Aligned_cols=300 Identities=15% Similarity=0.166 Sum_probs=203.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCC---CCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCC
Q 000251 313 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGH---TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 389 (1784)
Q Consensus 313 ~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH---~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg 389 (1784)
..-..+.|+|-...|+++...-.|+|||.+.++.+..|..+ ...|+.+.+...... .+|++|+.||.|+||+--..
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~-aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDD-ALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccch-hheeeeccCceEEEeccccc
Confidence 34566778888888999887779999999999988777544 356889998776433 38999999999999974332
Q ss_pred c-ccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecC
Q 000251 390 Q-FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 468 (1784)
Q Consensus 390 ~-~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~g 468 (1784)
. ....+.. +............... .-+.|......|+++|.-..|+|||+.+... ......+
T Consensus 1144 ~~~~~eLVT--------aw~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~--------~~diP~~ 1206 (1387)
T KOG1517|consen 1144 KWKKPELVT--------AWSSLSDQLPGARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV--------VADIPYG 1206 (1387)
T ss_pred ccCCceeEE--------eeccccccCccCCCCC-eeeehhhhCCeEEecCCeeEEEEEeccccee--------EeecccC
Confidence 2 1112111 0000000011111111 4567877666677776688999999965221 1111222
Q ss_pred CCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCC
Q 000251 469 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 548 (1784)
Q Consensus 469 H~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~ 548 (1784)
....|+++.-+-. .++.|++|-.||.|++||.+....
T Consensus 1207 s~t~vTaLS~~~~-------------------------~gn~i~AGfaDGsvRvyD~R~a~~------------------ 1243 (1387)
T KOG1517|consen 1207 SSTLVTALSADLV-------------------------HGNIIAAGFADGSVRVYDRRMAPP------------------ 1243 (1387)
T ss_pred CCccceeeccccc-------------------------CCceEEEeecCCceEEeecccCCc------------------
Confidence 3344554433211 147999999999999999985221
Q ss_pred CCCCCCCCCCCceeccCCCCC--eeEEEEcCCCCE-EEEEecCCeEEEEECCCCceEE--EEecCC--C-CeEEEEEecC
Q 000251 549 PMPPQPPRGGPRQRILPTPRG--VNMIVWSLDNRF-VLAAIMDCRICVWNAADGSLVH--SLTGHT--E-STYVLDVHPF 620 (1784)
Q Consensus 549 ~~~~~~~~~~~~~~l~~h~~~--VtsVafSPDG~~-LaSgs~DGsI~VWDl~tgklv~--~L~gH~--~-~VtsLafSPd 620 (1784)
...+.....|... |..+.+-+.|-- |++|+.||.|++||++...... .+..|. + .++++..|+
T Consensus 1244 --------ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~- 1314 (1387)
T KOG1517|consen 1244 --------DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHE- 1314 (1387)
T ss_pred --------cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeecc-
Confidence 1223334455555 888888886654 9999999999999998742222 223333 3 489999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEEEEecc-------CcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000251 621 NPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS-------RFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 684 (1784)
Q Consensus 621 d~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~-------~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sG 684 (1784)
...++|+|+. +.|+||++ .|+.+..+..+ .+.+.+++|+|---+||+|..|..|.||....+
T Consensus 1315 hapiiAsGs~-q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1315 HAPIIASGSA-QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred CCCeeeecCc-ceEEEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 7789999988 99999999 66666655422 246789999999999999999999999987544
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=155.65 Aligned_cols=364 Identities=14% Similarity=0.134 Sum_probs=226.2
Q ss_pred EEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE-eCCCEEEEEECCCCCeeEEecCCC
Q 000251 276 AIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASA-SNDCIIRVWRLPDGLPISVLRGHT 354 (1784)
Q Consensus 276 VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASG-S~DGtIrVWDl~tgk~i~~L~gH~ 354 (1784)
+.|||+|++||+.+.- .+.|-|..|.+.++.+. --..|.-|.|..|.-+++++ ..++.|.+|++....-...+....
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 5699999999999865 78888988876654433 24578889999988877665 557899999999888888888888
Q ss_pred CceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEE
Q 000251 355 AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVF 434 (1784)
Q Consensus 355 ~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~L 434 (1784)
..+.+++|||+|. +.|.+...+-.|.+|.+.+......- .....+..++|+|||++.
T Consensus 92 agls~~~WSPdgr--hiL~tseF~lriTVWSL~t~~~~~~~---------------------~pK~~~kg~~f~~dg~f~ 148 (447)
T KOG4497|consen 92 AGLSSISWSPDGR--HILLTSEFDLRITVWSLNTQKGYLLP---------------------HPKTNVKGYAFHPDGQFC 148 (447)
T ss_pred CcceeeeECCCcc--eEeeeecceeEEEEEEeccceeEEec---------------------ccccCceeEEECCCCcee
Confidence 9999999999997 47888889999999999876532211 122335677888888877
Q ss_pred EEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCC--------CCCCccccccc
Q 000251 435 VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE--------DSTPKFKNSWF 506 (1784)
Q Consensus 435 asGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~--------~~~~~~~~~~~ 506 (1784)
+..+.-...-.+++.. -+....+..+...+-..+.+.|+|+|-.. ...+..-+ ....++..-..
T Consensus 149 ai~sRrDCkdyv~i~~------c~~W~ll~~f~~dT~DltgieWsPdg~~l--aVwd~~Leykv~aYe~~lG~k~v~wsP 220 (447)
T KOG4497|consen 149 AILSRRDCKDYVQISS------CKAWILLKEFKLDTIDLTGIEWSPDGNWL--AVWDNVLEYKVYAYERGLGLKFVEWSP 220 (447)
T ss_pred eeeecccHHHHHHHHh------hHHHHHHHhcCCCcccccCceECCCCcEE--EEecchhhheeeeeeeccceeEEEecc
Confidence 7665432111111100 01122233334444455666666665211 11111000 01111111113
Q ss_pred cCCeEEEEeCCCcEEEEeCCCCCCCcccccc------------c---cc-----ccccCCCCCCCCCCC-----------
Q 000251 507 CHDNIVTCSRDGSAIIWIPRSRRSHPKAARW------------T---QA-----YHLKVPPPPMPPQPP----------- 555 (1784)
Q Consensus 507 ~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w------------~---~~-----~~l~~~~~~~~~~~~----------- 555 (1784)
+++.|+.|+.|+.++|.+--+-+..+..... . .. ..+.+.++.......
T Consensus 221 ~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~ 300 (447)
T KOG4497|consen 221 CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQM 300 (447)
T ss_pred ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhh
Confidence 4689999999999998554332222111000 0 00 001111111110000
Q ss_pred ------CCCCceeccCCCCCeeEEEEcCCCCEEEEEe--cCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEE
Q 000251 556 ------RGGPRQRILPTPRGVNMIVWSLDNRFVLAAI--MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS 627 (1784)
Q Consensus 556 ------~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs--~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaS 627 (1784)
...+.........++..++||+|..|+++-. .-+.+.+||++.-++...+. ...+|....|+|..+++++.
T Consensus 301 ~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vc 379 (447)
T KOG4497|consen 301 TPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVC 379 (447)
T ss_pred cceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEE
Confidence 0001111112245688999999999999864 34679999998877665554 45679999999966666655
Q ss_pred EeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCe
Q 000251 628 AGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQ 675 (1784)
Q Consensus 628 gs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~ 675 (1784)
.| ...+++|...-...+..-. ....|..+.|.-+|..|+..+.|.-
T Consensus 380 tg-~srLY~W~psg~~~V~vP~-~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 380 TG-KSRLYFWAPSGPRVVGVPK-KGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred cC-CceEEEEcCCCceEEecCC-CCceeeeEEecCCCcEEEEEcCCce
Confidence 44 5569999985545554443 4478999999999999999888753
|
|
| >cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-15 Score=149.81 Aligned_cols=98 Identities=15% Similarity=0.236 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHhhhcccccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhh
Q 000251 1672 RNKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESY 1749 (1784)
Q Consensus 1672 r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~f 1749 (1784)
.+.+..++.+|... ...+.+++|..+++.. ..|+|+++|++||||+||++||+++.|+++++|..||++||+||..|
T Consensus 2 ~~~c~~il~~l~~~-~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 80 (102)
T cd05498 2 LKFCSGILKELFSK-KHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKY 80 (102)
T ss_pred hhHHHHHHHHHHhC-CCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35677778888663 2235677888887654 58999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHH
Q 000251 1750 FGRNTDLSTKIKRLSDLVTRT 1770 (1784)
Q Consensus 1750 N~~~s~i~~~a~~l~~~~~~~ 1770 (1784)
|++++.++.+|+.|++.|.++
T Consensus 81 n~~~s~i~~~a~~l~~~fe~~ 101 (102)
T cd05498 81 NPPDHPVHAMARKLQDVFEDR 101 (102)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999864
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-15 Score=149.31 Aligned_cols=94 Identities=18% Similarity=0.248 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhc
Q 000251 1673 NKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1750 (1784)
Q Consensus 1673 ~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN 1750 (1784)
..+..++..+.. +..++.|..|++.. ..|+|+++|+.||||+||++||+++.|+++++|..|+++||.||.+||
T Consensus 3 ~~c~~il~~l~~----~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn 78 (99)
T cd05506 3 KQCGTLLRKLMK----HKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYN 78 (99)
T ss_pred HHHHHHHHHHHh----CCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 345566666644 56678888887755 689999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHH
Q 000251 1751 GRNTDLSTKIKRLSDLVTRT 1770 (1784)
Q Consensus 1751 ~~~s~i~~~a~~l~~~~~~~ 1770 (1784)
++++.++++|..|.+.|.+.
T Consensus 79 ~~~s~i~~~a~~l~~~fe~~ 98 (99)
T cd05506 79 PPGNDVHTMAKELLKIFETR 98 (99)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999763
|
Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.3e-15 Score=148.88 Aligned_cols=96 Identities=21% Similarity=0.360 Sum_probs=83.8
Q ss_pred HHHHHHHHHhhh--cccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCC
Q 000251 1675 LLSAFAKLEQSA--NRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGR 1752 (1784)
Q Consensus 1675 l~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~ 1752 (1784)
+..++..+.+.- .+.+-+++|..++.....|+||++|+.||||+||++||+++.|.++++|..|+++||+||.+||++
T Consensus 7 l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~yn~~ 86 (106)
T cd05525 7 LKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGR 86 (106)
T ss_pred HHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 334444443322 334567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 000251 1753 NTDLSTKIKRLSDLVTRT 1770 (1784)
Q Consensus 1753 ~s~i~~~a~~l~~~~~~~ 1770 (1784)
+|.+++.|..|++.|.+.
T Consensus 87 ~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 87 KSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred CCHHHHHHHHHHHHHHHc
Confidence 999999999999999864
|
ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-15 Score=149.32 Aligned_cols=96 Identities=18% Similarity=0.236 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCC
Q 000251 1674 KLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRN 1753 (1784)
Q Consensus 1674 kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~ 1753 (1784)
.++..+..+... .++.....|..++..+..|+||++|+.||||+||++||++ |.++++|..|+++||+||++||+++
T Consensus 8 ~l~~~i~~~~~~-~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~yN~~~ 84 (106)
T cd05521 8 PLYDGIYTLKEE-NGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLYNTKG 84 (106)
T ss_pred HHHHHHHhhcCc-CCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 344444444332 2344556788888888999999999999999999999999 9999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHh
Q 000251 1754 TDLSTKIKRLSDLVTRTLS 1772 (1784)
Q Consensus 1754 s~i~~~a~~l~~~~~~~i~ 1772 (1784)
|.+++.|..|+++|.++|.
T Consensus 85 s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 85 SVIYKYALILEKYINDVII 103 (106)
T ss_pred CHHHHHHHHHHHHHHHhhc
Confidence 9999999999999998873
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-14 Score=173.16 Aligned_cols=268 Identities=21% Similarity=0.311 Sum_probs=192.0
Q ss_pred EEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEE
Q 000251 348 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 427 (1784)
Q Consensus 348 ~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLaf 427 (1784)
.++..|...|+.++|.|... .|++++.||+|.+|++..... .......+...+.+|.++|.|+++
T Consensus 288 ~tl~s~~d~ir~l~~~~sep---~lit~sed~~lk~WnLqk~~~------------s~~~~~epi~tfraH~gPVl~v~v 352 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEP---VLITASEDGTLKLWNLQKAKK------------SAEKDVEPILTFRAHEGPVLCVVV 352 (577)
T ss_pred eeeecchhhhhhhhcCCCCC---eEEEeccccchhhhhhcccCC------------ccccceeeeEEEecccCceEEEEe
Confidence 36677999999999999877 899999999999999943110 012233445667889999999999
Q ss_pred CCCCCEEEEeeCCceEEEEcCCCCCC--CCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCcccccc
Q 000251 428 NANGTVFVTGSSDTLARVWNACKPNT--DDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 505 (1784)
Q Consensus 428 SpdG~~LasGs~DG~IrVWDl~tg~~--~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~ 505 (1784)
.+++..+++|+.||+|+.|++- .+. .....+......+.||.+.|+.+++++..
T Consensus 353 ~~n~~~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~----------------------- 408 (577)
T KOG0642|consen 353 PSNGEHCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK----------------------- 408 (577)
T ss_pred cCCceEEEeeccCceeeeeccC-CCCCcccccCcchhccceeccccceeeeeecccc-----------------------
Confidence 9999999999999999999885 221 12223345567889999999999999764
Q ss_pred ccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC-CEEEE
Q 000251 506 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN-RFVLA 584 (1784)
Q Consensus 506 ~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG-~~LaS 584 (1784)
+.|++|+.||++++|+....... .+ +. .....-..++.+-... ...++
T Consensus 409 ---~~Llscs~DgTvr~w~~~~~~~~-~f----------------------~~-----~~e~g~Plsvd~~ss~~a~~~~ 457 (577)
T KOG0642|consen 409 ---DRLLSCSSDGTVRLWEPTEESPC-TF----------------------GE-----PKEHGYPLSVDRTSSRPAHSLA 457 (577)
T ss_pred ---cceeeecCCceEEeeccCCcCcc-cc----------------------CC-----ccccCCcceEeeccchhHhhhh
Confidence 68999999999999988753310 00 00 0001112233332221 11222
Q ss_pred EecCCeEEEEECCCCceEEEEecC-------CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEE
Q 000251 585 AIMDCRICVWNAADGSLVHSLTGH-------TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVD 657 (1784)
Q Consensus 585 gs~DGsI~VWDl~tgklv~~L~gH-------~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~Its 657 (1784)
...-+.--+++...+..+..+... ...+.-+.++| +.-+.+++..|+.|+++|..+|.++.....|...+++
T Consensus 458 s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svts 536 (577)
T KOG0642|consen 458 SFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTS 536 (577)
T ss_pred hcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccccchheeeccceecc
Confidence 222223333444444444444321 23467788899 5578889999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcc
Q 000251 658 GKFSPDGASIILSDDVGQLYILNTGQGES 686 (1784)
Q Consensus 658 lafSPDGk~LAsgs~DG~I~IWdl~sGe~ 686 (1784)
+++.|+|-+|++++.||.+.+|.+....+
T Consensus 537 lai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 537 LAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred eeecCCCceEEeecCCceeehhhccchhe
Confidence 99999999999999999999999865433
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-12 Score=143.76 Aligned_cols=287 Identities=13% Similarity=0.176 Sum_probs=198.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEECCC---------C-CeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEE
Q 000251 314 DITDLAVSSNNALVASASNDCIIRVWRLPD---------G-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383 (1784)
Q Consensus 314 ~VtsLafSpDg~lLASGS~DGtIrVWDl~t---------g-k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrI 383 (1784)
.|.+-+|+|.+++|++|..+|+|.+..+.+ | .++...++|.++|+.++|..+ +|++|+. |.|+-
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~-----~Lls~gd-G~V~g 85 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD-----FLLSGGD-GLVYG 85 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh-----heeeccC-ceEEE
Confidence 456668999999999999999999998853 2 345566899999999999953 5676665 99999
Q ss_pred EecCCCcc----cceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCC
Q 000251 384 WDARYSQF----SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQP 459 (1784)
Q Consensus 384 WDl~tg~~----l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~ 459 (1784)
|..+.... ........+ .......--.|+++...|..+-|+.++.|+.++-||+.+
T Consensus 86 w~W~E~~es~~~K~lwe~~~P-----------~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~--------- 145 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIP-----------MQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED--------- 145 (325)
T ss_pred eeehhhhhhccchhhhhhcCc-----------cccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC---------
Confidence 98764322 111111001 001011233588999998777777777899999999976
Q ss_pred CcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccc
Q 000251 460 NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQ 539 (1784)
Q Consensus 460 ~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~ 539 (1784)
++..+.+.||++-|.++.--.. ...+++|+.||+++|||.++++.......+..
T Consensus 146 G~i~r~~rGHtDYvH~vv~R~~--------------------------~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~ 199 (325)
T KOG0649|consen 146 GRIQREYRGHTDYVHSVVGRNA--------------------------NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKN 199 (325)
T ss_pred CEEEEEEcCCcceeeeeeeccc--------------------------CcceeecCCCccEEEEeccccceeEEeccccC
Confidence 4567889999999999986322 24899999999999999998764333222111
Q ss_pred cccccCCCCCCCCCCCCCCCceeccCC-CCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEe
Q 000251 540 AYHLKVPPPPMPPQPPRGGPRQRILPT-PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH 618 (1784)
Q Consensus 540 ~~~l~~~~~~~~~~~~~~~~~~~l~~h-~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafS 618 (1784)
...+.+| ...|.+++. +..++++|+. -.+.+|.+...++..++. -.+.|..+.|-
T Consensus 200 --------------------~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~v~~v~F~ 255 (325)
T KOG0649|consen 200 --------------------PNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFP-IPARVHLVDFV 255 (325)
T ss_pred --------------------hhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEe-cccceeEeeee
Confidence 1111222 234666655 4568888764 579999999998888776 23456777774
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCC-CEEEEEeCCCeEEEEE
Q 000251 619 PFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDG-ASIILSDDVGQLYILN 680 (1784)
Q Consensus 619 Pdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDG-k~LAsgs~DG~I~IWd 680 (1784)
...++++|..+.|.-|.+ .|.+.......+...+...|+..- ++|-.++....+.|+.
T Consensus 256 ---~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 256 ---DDCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred ---cceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 356677888889999988 677766666556566666665443 3444556667777664
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-12 Score=156.83 Aligned_cols=276 Identities=12% Similarity=0.132 Sum_probs=173.5
Q ss_pred EEEeCCCEEEEEECCC-CC--eeEEecCCCCceEEEEecCCCCccEEEEEE-eCCCcEEEEecCC-CcccceeecCCCCC
Q 000251 328 ASASNDCIIRVWRLPD-GL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSS-SDDGTCRIWDARY-SQFSPRIYIPRPSD 402 (1784)
Q Consensus 328 ASGS~DGtIrVWDl~t-gk--~i~~L~gH~~~VtsLafSPdg~~~~~LaSg-s~DGtIrIWDl~t-g~~l~~i~l~~~~~ 402 (1784)
++...++.|.+|++.+ |+ .+..+. +.+....++++|+++ +|+++ ..++.|.+|++.. +.+ .....
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~---~lyv~~~~~~~i~~~~~~~~g~l-~~~~~----- 75 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKR---HLYVGVRPEFRVLSYRIADDGAL-TFAAE----- 75 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCC---EEEEEECCCCcEEEEEECCCCce-EEeee-----
Confidence 4446789999999964 43 445554 346678899999987 55544 5688999999963 322 11100
Q ss_pred cccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeC-CceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccC
Q 000251 403 AVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 481 (1784)
Q Consensus 403 ~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~-DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpd 481 (1784)
......+..++|+|+|++|++++. ++.|.+|++.+... ....+..+. +......++++|+
T Consensus 76 -------------~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~-----~~~~~~~~~-~~~~~~~~~~~p~ 136 (330)
T PRK11028 76 -------------SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI-----PVAPIQIIE-GLEGCHSANIDPD 136 (330)
T ss_pred -------------ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC-----CCCceeecc-CCCcccEeEeCCC
Confidence 001123568999999998887764 88999999853211 011222222 2234567788887
Q ss_pred cccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCce
Q 000251 482 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 561 (1784)
Q Consensus 482 glas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~ 561 (1784)
+ ...+++...++.|.+||+.+....... .....
T Consensus 137 g-------------------------~~l~v~~~~~~~v~v~d~~~~g~l~~~----------------------~~~~~ 169 (330)
T PRK11028 137 N-------------------------RTLWVPCLKEDRIRLFTLSDDGHLVAQ----------------------EPAEV 169 (330)
T ss_pred C-------------------------CEEEEeeCCCCEEEEEEECCCCccccc----------------------CCCce
Confidence 6 124466677899999999752210000 00000
Q ss_pred eccCCCCCeeEEEEcCCCCEEEEEec-CCeEEEEECCC--Cc--eEEEEecCC------CCeEEEEEecCCCcEEEEE-e
Q 000251 562 RILPTPRGVNMIVWSLDNRFVLAAIM-DCRICVWNAAD--GS--LVHSLTGHT------ESTYVLDVHPFNPRIAMSA-G 629 (1784)
Q Consensus 562 ~l~~h~~~VtsVafSPDG~~LaSgs~-DGsI~VWDl~t--gk--lv~~L~gH~------~~VtsLafSPdd~~lLaSg-s 629 (1784)
. .........++|+|+|++|+++.. ++.|.+|++.. ++ .+..+..+. .....+.++| ++++|+++ .
T Consensus 170 ~-~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~ 247 (330)
T PRK11028 170 T-TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDR 247 (330)
T ss_pred e-cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecC
Confidence 0 011234567899999999988775 89999999973 33 344443221 1233688999 55555555 4
Q ss_pred CCCcEEEEeCCCCc----eEEEEeccCcceEEEEEcCCCCEEEEEeC-CCeEEEEECC
Q 000251 630 YDGKTIVWDIWEGI----PIRIYEISRFRLVDGKFSPDGASIILSDD-VGQLYILNTG 682 (1784)
Q Consensus 630 ~DG~IrIWDl~tG~----~l~tl~~~~~~ItslafSPDGk~LAsgs~-DG~I~IWdl~ 682 (1784)
.++.|.+|++.... .+..+..+ .....+.|+|||++|+++.. ++.|.+|++.
T Consensus 248 ~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 248 TASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 57899999996533 22333222 24557899999999998765 8999999874
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.3e-13 Score=149.94 Aligned_cols=293 Identities=18% Similarity=0.224 Sum_probs=203.3
Q ss_pred CCeEEEEEcC--C-CCEEEEEeC----CCEEEEEEC--CCCCeeEEe-cCCCCceEEEEecCCCC--ccEEEEEEeCCCc
Q 000251 313 GDITDLAVSS--N-NALVASASN----DCIIRVWRL--PDGLPISVL-RGHTAAVTAIAFSPRPG--SVYQLLSSSDDGT 380 (1784)
Q Consensus 313 ~~VtsLafSp--D-g~lLASGS~----DGtIrVWDl--~tgk~i~~L-~gH~~~VtsLafSPdg~--~~~~LaSgs~DGt 380 (1784)
-.+.++.|+. + +.+||.|+. .+.|.|..+ .+++.+..- ..|..+++.+.|.|+.. ...+|++.+ -.
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence 4577888873 2 337888874 355666544 344433222 35889999999999863 233444444 46
Q ss_pred EEEEecCCC--cccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECC-CCCEEEEeeCCceEEEEcCCCCCCCCCC
Q 000251 381 CRIWDARYS--QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSD 457 (1784)
Q Consensus 381 IrIWDl~tg--~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSp-dG~~LasGs~DG~IrVWDl~tg~~~~s~ 457 (1784)
+++|.+... .......+ .......+...++++.|+. +-++|.+.+-|.+..|||+.++
T Consensus 123 LRlWri~~ee~~~~~~~~L-------------~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~------ 183 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVL-------------NNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG------ 183 (364)
T ss_pred EEEEeccCcCCceehhhhh-------------ccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeec------
Confidence 999998742 22111111 0111234566889999987 6689999999999999999764
Q ss_pred CCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccc
Q 000251 458 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 537 (1784)
Q Consensus 458 ~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w 537 (1784)
..+.....+.+|...|..|+|...+ .+.|++.+.||.+++||++........
T Consensus 184 ~~~~vkTQLIAHDKEV~DIaf~~~s-------------------------~~~FASvgaDGSvRmFDLR~leHSTII--- 235 (364)
T KOG0290|consen 184 VSGTVKTQLIAHDKEVYDIAFLKGS-------------------------RDVFASVGADGSVRMFDLRSLEHSTII--- 235 (364)
T ss_pred cccceeeEEEecCcceeEEEeccCc-------------------------cceEEEecCCCcEEEEEecccccceEE---
Confidence 2344567788999999999999754 369999999999999999963311100
Q ss_pred cccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC-CCEEEEEecC-CeEEEEECCC-CceEEEEecCCCCeEE
Q 000251 538 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD-NRFVLAAIMD-CRICVWNAAD-GSLVHSLTGHTESTYV 614 (1784)
Q Consensus 538 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD-G~~LaSgs~D-GsI~VWDl~t-gklv~~L~gH~~~Vts 614 (1784)
| .-.....+...++|++. -+++|+-.+| ..|.|.|++. +.++..|.+|.+.|++
T Consensus 236 ---Y--------------------E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNg 292 (364)
T KOG0290|consen 236 ---Y--------------------EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNG 292 (364)
T ss_pred ---e--------------------cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccc
Confidence 0 00011345667788764 4566764444 5699999986 5678999999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCC------ceEEEEeccCcceEEEEEcC-CCCEEEEEeCCCeEEEE
Q 000251 615 LDVHPFNPRIAMSAGYDGKTIVWDIWEG------IPIRIYEISRFRLVDGKFSP-DGASIILSDDVGQLYIL 679 (1784)
Q Consensus 615 LafSPdd~~lLaSgs~DG~IrIWDl~tG------~~l~tl~~~~~~ItslafSP-DGk~LAsgs~DG~I~IW 679 (1784)
|+|.|.....|+|||.|..+.|||+..- .++..+. ..+.|..+.|++ .+.+|+++.. ..+.|.
T Consensus 293 IaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~-kkleiL 362 (364)
T KOG0290|consen 293 IAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG-KKLEIL 362 (364)
T ss_pred eEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec-CeeeEE
Confidence 9999988899999999999999999653 2333343 556899999996 4667777654 444443
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-13 Score=151.39 Aligned_cols=242 Identities=20% Similarity=0.309 Sum_probs=180.5
Q ss_pred cCCCCEEEEEECCCC-----CEEEEEcCCcEEEEEECCC--CeEE--EEE-----ecCCCCeEEEEEcC-CCCEEEEEeC
Q 000251 268 GHRNAVYCAIFDRSG-----RYVITGSDDRLVKIWSMET--AYCL--ASC-----RGHEGDITDLAVSS-NNALVASASN 332 (1784)
Q Consensus 268 GH~~~Vt~VaFSPDG-----~~LATGS~DGtIkIWDl~T--gk~l--~tL-----~gH~~~VtsLafSp-Dg~lLASGS~ 332 (1784)
.|.-+++.+.|.|+. ++|||.++ .++||.+.. .+.. ..+ ..+.+++++..|+. +-++|.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 588899999999986 36777654 799999863 2211 111 24678999999986 6679999999
Q ss_pred CCEEEEEECCCCCe---eEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCC
Q 000251 333 DCIIRVWRLPDGLP---ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 409 (1784)
Q Consensus 333 DGtIrVWDl~tgk~---i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~ 409 (1784)
|-+..|||+++|.. ...|-.|...|..|+|...+. ..|++.+.||.|++||++.......++ +.+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~--~~FASvgaDGSvRmFDLR~leHSTIIY-E~p--------- 239 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSR--DVFASVGADGSVRMFDLRSLEHSTIIY-EDP--------- 239 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCcc--ceEEEecCCCcEEEEEecccccceEEe-cCC---------
Confidence 99999999998743 556778999999999999654 489999999999999999776444333 111
Q ss_pred CCCCCCCCCCCceEEEEECCC-CCEEEEeeCC-ceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccc
Q 000251 410 APSSSAGPQSHQIFCCAFNAN-GTVFVTGSSD-TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 487 (1784)
Q Consensus 410 ~~~~s~~~h~~~V~sLafSpd-G~~LasGs~D-G~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~ 487 (1784)
........++|++. -+++|+-..| ..|.|.|++.+ ...+..+.+|.+.|++|+|.|..
T Consensus 240 -------~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P--------~tpva~L~~H~a~VNgIaWaPhS----- 299 (364)
T KOG0290|consen 240 -------SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP--------CTPVARLRNHQASVNGIAWAPHS----- 299 (364)
T ss_pred -------CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC--------CcceehhhcCcccccceEecCCC-----
Confidence 11456788999884 4677765544 57999999753 55788999999999999999975
Q ss_pred cccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCC
Q 000251 488 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 567 (1784)
Q Consensus 488 ~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~ 567 (1784)
...|++++.|..+.|||+.+.-. .....++.... ..
T Consensus 300 --------------------~~hictaGDD~qaliWDl~q~~~-----------------------~~~~dPilay~-a~ 335 (364)
T KOG0290|consen 300 --------------------SSHICTAGDDCQALIWDLQQMPR-----------------------ENGEDPILAYT-AG 335 (364)
T ss_pred --------------------CceeeecCCcceEEEEecccccc-----------------------cCCCCchhhhh-cc
Confidence 46899999999999999985110 01112222222 45
Q ss_pred CCeeEEEEcC-CCCEEEEEec
Q 000251 568 RGVNMIVWSL-DNRFVLAAIM 587 (1784)
Q Consensus 568 ~~VtsVafSP-DG~~LaSgs~ 587 (1784)
..|+.+.|++ .+.+|+.+..
T Consensus 336 ~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 336 GEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ceeeeeeecccCCCEEEEEec
Confidence 6799999995 5667777654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.7e-12 Score=153.73 Aligned_cols=284 Identities=13% Similarity=0.174 Sum_probs=172.6
Q ss_pred EEEcCCcEEEEEECCC-Ce--EEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCEEEEEECC-CCCe--eEEecCCCCceE
Q 000251 286 ITGSDDRLVKIWSMET-AY--CLASCRGHEGDITDLAVSSNNALVASAS-NDCIIRVWRLP-DGLP--ISVLRGHTAAVT 358 (1784)
Q Consensus 286 ATGS~DGtIkIWDl~T-gk--~l~tL~gH~~~VtsLafSpDg~lLASGS-~DGtIrVWDl~-tgk~--i~~L~gH~~~Vt 358 (1784)
++...++.|.+|++.+ |+ .+.++. +.+....++++|++++|++++ .++.|.+|++. +|.. +.... ..+...
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 3446789999999964 43 445554 346678899999999887765 47889999986 3432 22222 334567
Q ss_pred EEEecCCCCccEEEEEEe-CCCcEEEEecCCCccc-ceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEE
Q 000251 359 AIAFSPRPGSVYQLLSSS-DDGTCRIWDARYSQFS-PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 436 (1784)
Q Consensus 359 sLafSPdg~~~~~LaSgs-~DGtIrIWDl~tg~~l-~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~Las 436 (1784)
.++|+|+++ +|++++ .++.|.+|++.+.... ..+.. ..+...+.+++++|+|+++++
T Consensus 84 ~i~~~~~g~---~l~v~~~~~~~v~v~~~~~~g~~~~~~~~------------------~~~~~~~~~~~~~p~g~~l~v 142 (330)
T PRK11028 84 HISTDHQGR---FLFSASYNANCVSVSPLDKDGIPVAPIQI------------------IEGLEGCHSANIDPDNRTLWV 142 (330)
T ss_pred EEEECCCCC---EEEEEEcCCCeEEEEEECCCCCCCCceee------------------ccCCCcccEeEeCCCCCEEEE
Confidence 899999987 555554 5899999999643211 11100 011223567889999988865
Q ss_pred ee-CCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEe
Q 000251 437 GS-SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS 515 (1784)
Q Consensus 437 Gs-~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS 515 (1784)
++ .++.|.+||+.+...... ....... .. .......+.|+|++ .+++++.
T Consensus 143 ~~~~~~~v~v~d~~~~g~l~~-~~~~~~~-~~-~g~~p~~~~~~pdg--------------------------~~lyv~~ 193 (330)
T PRK11028 143 PCLKEDRIRLFTLSDDGHLVA-QEPAEVT-TV-EGAGPRHMVFHPNQ--------------------------QYAYCVN 193 (330)
T ss_pred eeCCCCEEEEEEECCCCcccc-cCCCcee-cC-CCCCCceEEECCCC--------------------------CEEEEEe
Confidence 54 569999999965211100 0000011 11 12335678999887 5665554
Q ss_pred -CCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe-cCCeEEE
Q 000251 516 -RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICV 593 (1784)
Q Consensus 516 -~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs-~DGsI~V 593 (1784)
.+++|.+|++..... .. ..... +...+ . . ..+......+.|+|+|++|+++. .++.|.+
T Consensus 194 ~~~~~v~v~~~~~~~~--~~-~~~~~--~~~~p----~----~------~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v 254 (330)
T PRK11028 194 ELNSSVDVWQLKDPHG--EI-ECVQT--LDMMP----A----D------FSDTRWAADIHITPDGRHLYACDRTASLISV 254 (330)
T ss_pred cCCCEEEEEEEeCCCC--CE-EEEEE--EecCC----C----c------CCCCccceeEEECCCCCEEEEecCCCCeEEE
Confidence 489999999973210 00 00000 00000 0 0 00112234688999999999885 4789999
Q ss_pred EECCCCceEEEEecC---CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000251 594 WNAADGSLVHSLTGH---TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 640 (1784)
Q Consensus 594 WDl~tgklv~~L~gH---~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 640 (1784)
|++........+.++ ......+.++|++..++++...+++|.||++.
T Consensus 255 ~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 255 FSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 998653322222222 12345789999555555555569999999874
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.7e-14 Score=165.78 Aligned_cols=315 Identities=18% Similarity=0.224 Sum_probs=232.6
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEe-cCCCCceEEEEecCCCCccEEEEEEeCCCcE
Q 000251 303 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 381 (1784)
Q Consensus 303 k~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L-~gH~~~VtsLafSPdg~~~~~LaSgs~DGtI 381 (1784)
.+...|..|.+.|..|.|+..|..|++|+.|..|.+||+..+++...+ .+|...|....|.|.... ..+++++.||.|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d-~ti~~~s~dgqv 211 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGD-RTIVTSSRDGQV 211 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCC-cCceeccccCce
Confidence 445678899999999999999999999999999999999999876665 589999999999997643 379999999999
Q ss_pred EEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCC-CEEEEeeCCceEEEEcCCCCCCCCCCCCC
Q 000251 382 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPN 460 (1784)
Q Consensus 382 rIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG-~~LasGs~DG~IrVWDl~tg~~~~s~~~~ 460 (1784)
++=.+........ ......|.+.|.-++.-|+. .-|.+++.|+.+.-+|++.... .
T Consensus 212 r~s~i~~t~~~e~-----------------t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~p------a 268 (559)
T KOG1334|consen 212 RVSEILETGYVEN-----------------TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVP------A 268 (559)
T ss_pred eeeeeccccceec-----------------ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCc------c
Confidence 9876543322211 11234688889999999865 5688999999999999976432 2
Q ss_pred cceeeecCCCC---CceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccc
Q 000251 461 HEIDVLSGHEN---DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 537 (1784)
Q Consensus 461 ~~i~~l~gH~~---~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w 537 (1784)
..+.....+.. ....|+..|.. ...+++|+.|-.+++||.+.-......+.
T Consensus 269 ~~~~cr~~~~~~~v~L~~Ia~~P~n-------------------------t~~faVgG~dqf~RvYD~R~~~~e~~n~~- 322 (559)
T KOG1334|consen 269 EKFVCREADEKERVGLYTIAVDPRN-------------------------TNEFAVGGSDQFARVYDQRRIDKEENNGV- 322 (559)
T ss_pred ceeeeeccCCccceeeeeEecCCCC-------------------------ccccccCChhhhhhhhcccchhhccccch-
Confidence 22223333333 45566666643 25899999999999999875321111000
Q ss_pred cccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCC--C----------ceEE-E
Q 000251 538 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD--G----------SLVH-S 604 (1784)
Q Consensus 538 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~t--g----------klv~-~ 604 (1784)
+ ....+..........|++++|+.++.-|+++..|-.|+++.-.- | ..+. .
T Consensus 323 -----~-----------~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~v 386 (559)
T KOG1334|consen 323 -----L-----------DKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRV 386 (559)
T ss_pred -----h-----------hhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchh
Confidence 0 00011111123345699999999988888888888999995432 3 2233 3
Q ss_pred EecCCC--CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000251 605 LTGHTE--STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 682 (1784)
Q Consensus 605 L~gH~~--~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~ 682 (1784)
++||.. .|..+-|---...++++|+.-|.|.||+-.+++.++.+.+...-|.|+.=+|--..||+++-|..|+||...
T Consensus 387 YKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 387 YKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred hcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence 788865 466776632146899999999999999999999999998777778899999999999999999999999874
Q ss_pred C
Q 000251 683 Q 683 (1784)
Q Consensus 683 s 683 (1784)
+
T Consensus 467 ~ 467 (559)
T KOG1334|consen 467 T 467 (559)
T ss_pred c
Confidence 4
|
|
| >cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-14 Score=144.50 Aligned_cols=95 Identities=18% Similarity=0.290 Sum_probs=83.4
Q ss_pred HHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCc
Q 000251 1675 LLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNT 1754 (1784)
Q Consensus 1675 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s 1754 (1784)
++..+.++... ..++-++.|..+++....|+||++|++||||+||++||+++.|.++.+|..|+++||.||..||++++
T Consensus 9 i~~~v~~~~d~-~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s 87 (104)
T cd05522 9 ILKGLRKERDE-NGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNENDS 87 (104)
T ss_pred HHHHHHHHhCc-CCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 34444444332 34567788999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 000251 1755 DLSTKIKRLSDLVTRT 1770 (1784)
Q Consensus 1755 ~i~~~a~~l~~~~~~~ 1770 (1784)
.++.+|..|++.|.+.
T Consensus 88 ~i~~~A~~l~~~f~~l 103 (104)
T cd05522 88 QEYKDAVLLEKEARLL 103 (104)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999863
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.9e-13 Score=152.03 Aligned_cols=215 Identities=15% Similarity=0.223 Sum_probs=166.4
Q ss_pred CCCCCCCCCCceEEEEECC-CCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccc
Q 000251 411 PSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 489 (1784)
Q Consensus 411 ~~~s~~~h~~~V~sLafSp-dG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~ 489 (1784)
......+|.+.|..++|+| +...||+|+.|.+|.||.+-.... ......++..+.+|...|..|+|+|..
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l--~~~ltepvv~L~gH~rrVg~V~wHPtA------- 143 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGL--TRDLTEPVVELYGHQRRVGLVQWHPTA------- 143 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCccc--ccCcccceEEEeecceeEEEEeecccc-------
Confidence 3455678999999999999 668899999999999999954322 223346788899999999999999976
Q ss_pred cCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCC
Q 000251 490 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG 569 (1784)
Q Consensus 490 ~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~ 569 (1784)
.+.|++++.|.+|.||++.+++ .... ..|...
T Consensus 144 ------------------~NVLlsag~Dn~v~iWnv~tge-----------------------------ali~-l~hpd~ 175 (472)
T KOG0303|consen 144 ------------------PNVLLSAGSDNTVSIWNVGTGE-----------------------------ALIT-LDHPDM 175 (472)
T ss_pred ------------------hhhHhhccCCceEEEEeccCCc-----------------------------eeee-cCCCCe
Confidence 3789999999999999999744 1222 338899
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCC-eEEEEEecCCCcEEEEE---eCCCcEEEEeCCCC---
Q 000251 570 VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES-TYVLDVHPFNPRIAMSA---GYDGKTIVWDIWEG--- 642 (1784)
Q Consensus 570 VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~-VtsLafSPdd~~lLaSg---s~DG~IrIWDl~tG--- 642 (1784)
|.++.|+.||.+|++++.|..|+|||.++|+.+..-.+|.+. -..+.|-. ++.++.|| ..+..+.|||..+-
T Consensus 176 i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl~eP 254 (472)
T KOG0303|consen 176 VYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNLEEP 254 (472)
T ss_pred EEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCceeeeccccccccceeccCcccccCc
Confidence 999999999999999999999999999999999998888763 22344544 44554443 25778999987653
Q ss_pred ceEEEEeccCcceEEEEEcCCCCEEE-EEeCCCeEEEEECCCC
Q 000251 643 IPIRIYEISRFRLVDGKFSPDGASII-LSDDVGQLYILNTGQG 684 (1784)
Q Consensus 643 ~~l~tl~~~~~~ItslafSPDGk~LA-sgs~DG~I~IWdl~sG 684 (1784)
-.+..+. ....|.---|.+|...|. +|-.||.|+.|.+..-
T Consensus 255 ~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 255 IALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 2334444 334566667888888776 4567999999998654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-12 Score=146.07 Aligned_cols=259 Identities=18% Similarity=0.217 Sum_probs=188.8
Q ss_pred EccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECC
Q 000251 266 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 342 (1784)
Q Consensus 266 L~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tg---k~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~ 342 (1784)
+.--..+|+|.||++|+..+|++.....|.||..... +..+++..|...|+.|+|+|..+.|++++.|..-+||...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 3334578999999999999999999999999987654 5788999999999999999999999999999999999984
Q ss_pred CC---CeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000251 343 DG---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 419 (1784)
Q Consensus 343 tg---k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~ 419 (1784)
.+ ++...+..+...+++|.|+|..+ .|++|+.-..|.||-++...-- ........+..
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~en---kFAVgSgar~isVcy~E~ENdW----------------WVsKhikkPir 146 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKEN---KFAVGSGARLISVCYYEQENDW----------------WVSKHIKKPIR 146 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCc---eEEeccCccEEEEEEEecccce----------------ehhhhhCCccc
Confidence 33 56667777999999999999987 8999999999999877643211 01112234567
Q ss_pred CceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCC
Q 000251 420 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 499 (1784)
Q Consensus 420 ~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~ 499 (1784)
..|+++.|+|++-+|++|+.|+..+||..- +..+.... .|.
T Consensus 147 Stv~sldWhpnnVLlaaGs~D~k~rVfSay-------------IK~Vdekp--------ap~------------------ 187 (361)
T KOG1523|consen 147 STVTSLDWHPNNVLLAAGSTDGKCRVFSAY-------------IKGVDEKP--------APT------------------ 187 (361)
T ss_pred cceeeeeccCCcceecccccCcceeEEEEe-------------eeccccCC--------CCC------------------
Confidence 789999999999999999999999999862 11111000 000
Q ss_pred ccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC
Q 000251 500 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 579 (1784)
Q Consensus 500 ~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG 579 (1784)
-|+-+ .+-+..+.......+.|..+.|+|+|
T Consensus 188 ----------------------pWgsk---------------------------~PFG~lm~E~~~~ggwvh~v~fs~sG 218 (361)
T KOG1523|consen 188 ----------------------PWGSK---------------------------MPFGQLMSEASSSGGWVHGVLFSPSG 218 (361)
T ss_pred ----------------------CCccC---------------------------CcHHHHHHhhccCCCceeeeEeCCCC
Confidence 01100 00112222222455779999999999
Q ss_pred CEEEEEecCCeEEEEECCCCc-eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 000251 580 RFVLAAIMDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK 633 (1784)
Q Consensus 580 ~~LaSgs~DGsI~VWDl~tgk-lv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~ 633 (1784)
..|+-.+.|..+.+-|..... .+..+....-+..++.|-. ...++.+++|..
T Consensus 219 ~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~is--e~~vv~ag~~c~ 271 (361)
T KOG1523|consen 219 NRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWIS--ENSVVAAGYDCG 271 (361)
T ss_pred CEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeec--CCceeecCCCCC
Confidence 999999999999999987664 3444433335666777754 234456666643
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-11 Score=152.08 Aligned_cols=336 Identities=15% Similarity=0.128 Sum_probs=205.8
Q ss_pred EEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecC
Q 000251 285 VITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 364 (1784)
Q Consensus 285 LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSP 364 (1784)
+++-..+|.|.|.|..+.+.+.++......-..++|+|||+++++++.||.|.++|+.+++.++.+... ....++++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~ 87 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSP 87 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcC
Confidence 356677899999999999999999865544456789999999999999999999999999999998754 4568899999
Q ss_pred CCCccEEEE-EEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeC-Cce
Q 000251 365 RPGSVYQLL-SSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTL 442 (1784)
Q Consensus 365 dg~~~~~La-Sgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~-DG~ 442 (1784)
||+ +++ +....+.|.++|..+.+.+..+...... .......+..+..++....+++.-. .+.
T Consensus 88 DG~---~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~-------------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~ 151 (369)
T PF02239_consen 88 DGK---YVYVANYEPGTVSVIDAETLEPVKTIPTGGMP-------------VDGPESRVAAIVASPGRPEFVVNLKDTGE 151 (369)
T ss_dssp TTT---EEEEEEEETTEEEEEETTT--EEEEEE--EE--------------TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred CCC---EEEEEecCCCceeEeccccccceeeccccccc-------------ccccCCCceeEEecCCCCEEEEEEccCCe
Confidence 998 555 4557899999999999888777431110 0013455778888888885555544 477
Q ss_pred EEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeE-EEEeCCCcEE
Q 000251 443 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI-VTCSRDGSAI 521 (1784)
Q Consensus 443 IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~L-VSgS~DGtIr 521 (1784)
|-+.|..... .................|.|++ .++ ++......|.
T Consensus 152 I~vVdy~d~~--------~~~~~~i~~g~~~~D~~~dpdg--------------------------ry~~va~~~sn~i~ 197 (369)
T PF02239_consen 152 IWVVDYSDPK--------NLKVTTIKVGRFPHDGGFDPDG--------------------------RYFLVAANGSNKIA 197 (369)
T ss_dssp EEEEETTTSS--------CEEEEEEE--TTEEEEEE-TTS--------------------------SEEEEEEGGGTEEE
T ss_pred EEEEEecccc--------ccceeeecccccccccccCccc--------------------------ceeeecccccceeE
Confidence 8777875321 1121222233455667888876 454 4455677888
Q ss_pred EEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCC--CeeEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 000251 522 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR--GVNMIVWSLDNRFVLAAIMDCRICVWNAADG 599 (1784)
Q Consensus 522 IWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~--~VtsVafSPDG~~LaSgs~DGsI~VWDl~tg 599 (1784)
++|..+++...... .... +...+... ..|.. .++. .+..+...++.-....+.+|+..+.
T Consensus 198 viD~~~~k~v~~i~---------~g~~------p~~~~~~~-~php~~g~vw~--~~~~~~~~~~~ig~~~v~v~d~~~w 259 (369)
T PF02239_consen 198 VIDTKTGKLVALID---------TGKK------PHPGPGAN-FPHPGFGPVWA--TSGLGYFAIPLIGTDPVSVHDDYAW 259 (369)
T ss_dssp EEETTTTEEEEEEE----------SSS------BEETTEEE-EEETTTEEEEE--EEBSSSSEEEEEE--TTT-STTTBT
T ss_pred EEeeccceEEEEee---------cccc------cccccccc-ccCCCcceEEe--eccccceecccccCCccccchhhcC
Confidence 99988644211100 0000 00000011 11221 1221 2233444444444456778999999
Q ss_pred ceEEEEecCCCCeEEEEEecCCCcEEEEE----eCCCcEEEEeCCCCceEEEEeccC-cceEEEEEcCCCCEEEEE--eC
Q 000251 600 SLVHSLTGHTESTYVLDVHPFNPRIAMSA----GYDGKTIVWDIWEGIPIRIYEISR-FRLVDGKFSPDGASIILS--DD 672 (1784)
Q Consensus 600 klv~~L~gH~~~VtsLafSPdd~~lLaSg----s~DG~IrIWDl~tG~~l~tl~~~~-~~ItslafSPDGk~LAsg--s~ 672 (1784)
+.++.+....+. ..+..|| +++++... ...+.|.|+|..+.+.+..+.... ..+..+.|++||+.+.++ ..
T Consensus 260 kvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 260 KVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp SEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--
T ss_pred eEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecC
Confidence 999999987777 7788899 55555555 456899999999998887775333 258899999999977755 44
Q ss_pred CCeEEEEECCCCccccccc
Q 000251 673 VGQLYILNTGQGESQKDAK 691 (1784)
Q Consensus 673 DG~I~IWdl~sGe~~~~~~ 691 (1784)
+|.|.|||..+.+.++.++
T Consensus 338 ~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 338 NGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TTEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEECCCcEEEEEEE
Confidence 5589999999988877655
|
... |
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.5e-12 Score=139.62 Aligned_cols=279 Identities=16% Similarity=0.253 Sum_probs=191.4
Q ss_pred CCEEEEEECCCCCEEEEEcCCcEEEEEECCC---------C-eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEE
Q 000251 271 NAVYCAIFDRSGRYVITGSDDRLVKIWSMET---------A-YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 340 (1784)
Q Consensus 271 ~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~T---------g-k~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWD 340 (1784)
..|.+-+++|.+++|++|..+|+|.|..+.+ | ..+...++|.++|+.++|. ..+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 4567778999999999999999999998753 2 3445568999999999998 44777776 59999997
Q ss_pred CCCCCe------eEEe--cCC-----CCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCC
Q 000251 341 LPDGLP------ISVL--RGH-----TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 407 (1784)
Q Consensus 341 l~tgk~------i~~L--~gH-----~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~ 407 (1784)
...... +..+ .-| --.|+++-..|..+ -++.++.|+.+..||+++|+....+
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en---Si~~AgGD~~~y~~dlE~G~i~r~~------------ 152 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN---SILFAGGDGVIYQVDLEDGRIQREY------------ 152 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC---cEEEecCCeEEEEEEecCCEEEEEE------------
Confidence 643211 1111 112 24688899998876 5677779999999999999876655
Q ss_pred CCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCC-CceEEEEccCccccc
Q 000251 408 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN-DVNYVQFSGCAVASR 486 (1784)
Q Consensus 408 ~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~-~V~sLafSpdglas~ 486 (1784)
.+|...|.+++--.....|++|+.||+++|||+++++......+.+....+..|-+ .|.+++.+.
T Consensus 153 --------rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e------ 218 (325)
T KOG0649|consen 153 --------RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE------ 218 (325)
T ss_pred --------cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC------
Confidence 46899999999854455799999999999999998766544444444444444433 355565542
Q ss_pred ccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCC
Q 000251 487 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 566 (1784)
Q Consensus 487 ~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 566 (1784)
+.+++| ....+.+|++++.++ ..+.+-
T Consensus 219 ----------------------dWlvCG-gGp~lslwhLrsse~------------------------------t~vfpi 245 (325)
T KOG0649|consen 219 ----------------------DWLVCG-GGPKLSLWHLRSSES------------------------------TCVFPI 245 (325)
T ss_pred ----------------------ceEEec-CCCceeEEeccCCCc------------------------------eEEEec
Confidence 355554 456789999986332 122233
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 000251 567 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 637 (1784)
Q Consensus 567 ~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIW 637 (1784)
...+..+.|- ...+++++..+.|.-|.+ +|.+...........+...|+-.--+++-.+|..+.+.|+
T Consensus 246 pa~v~~v~F~--~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 246 PARVHLVDFV--DDCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ccceeEeeee--cceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 4456666664 346777887778888886 4655555555555566666654223555556666666654
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.1e-12 Score=153.00 Aligned_cols=316 Identities=14% Similarity=0.086 Sum_probs=187.8
Q ss_pred ccccceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe-CCC
Q 000251 256 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS-NDC 334 (1784)
Q Consensus 256 ~~~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS-~DG 334 (1784)
+..+.+.+.++..+...-..++|+|||+++.+++.||.|.++|+.+++.+++++.. ....++++|+||++|++++ ..+
T Consensus 22 D~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~ 100 (369)
T PF02239_consen 22 DGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPG 100 (369)
T ss_dssp ETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETT
T ss_pred ECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCC
Confidence 45667888899876555455789999999999999999999999999999999853 4568899999999998776 479
Q ss_pred EEEEEECCCCCeeEEecCC-------CCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCC
Q 000251 335 IIRVWRLPDGLPISVLRGH-------TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 407 (1784)
Q Consensus 335 tIrVWDl~tgk~i~~L~gH-------~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~ 407 (1784)
.|.|+|..+.++++.+... ...+.+|..+|... .++++.-.-+.|.+.|......+....+
T Consensus 101 ~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~--~fVv~lkd~~~I~vVdy~d~~~~~~~~i---------- 168 (369)
T PF02239_consen 101 TVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP--EFVVNLKDTGEIWVVDYSDPKNLKVTTI---------- 168 (369)
T ss_dssp EEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS--EEEEEETTTTEEEEEETTTSSCEEEEEE----------
T ss_pred ceeEeccccccceeecccccccccccCCCceeEEecCCCC--EEEEEEccCCeEEEEEeccccccceeee----------
Confidence 9999999999998887532 34678888888765 2344445558888888776543322211
Q ss_pred CCCCCCCCCCCCCceEEEEECCCCCEEEEe-eCCceEEEEcCCCCCCCCCCCCCcceeee----cCCCCCceEEEEccCc
Q 000251 408 NMAPSSSAGPQSHQIFCCAFNANGTVFVTG-SSDTLARVWNACKPNTDDSDQPNHEIDVL----SGHENDVNYVQFSGCA 482 (1784)
Q Consensus 408 ~~~~~~s~~~h~~~V~sLafSpdG~~LasG-s~DG~IrVWDl~tg~~~~s~~~~~~i~~l----~gH~~~V~sLafSpdg 482 (1784)
..........|+|+|++++++ ..+..|.++|..+.+ .+..+ ..|...+..+- +|..
T Consensus 169 ---------~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k---------~v~~i~~g~~p~~~~~~~~p-hp~~ 229 (369)
T PF02239_consen 169 ---------KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK---------LVALIDTGKKPHPGPGANFP-HPGF 229 (369)
T ss_dssp ---------E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE---------EEEEEE-SSSBEETTEEEEE-ETTT
T ss_pred ---------cccccccccccCcccceeeecccccceeEEEeeccce---------EEEEeecccccccccccccc-CCCc
Confidence 112346678999999987664 456789999986532 22111 12222322221 1110
Q ss_pred ccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCcee
Q 000251 483 VASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 562 (1784)
Q Consensus 483 las~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~ 562 (1784)
.... .........++.-....+.+||..+ ......
T Consensus 230 -g~vw---------------~~~~~~~~~~~~ig~~~v~v~d~~~-----------------------------wkvv~~ 264 (369)
T PF02239_consen 230 -GPVW---------------ATSGLGYFAIPLIGTDPVSVHDDYA-----------------------------WKVVKT 264 (369)
T ss_dssp -EEEE---------------EEEBSSSSEEEEEE--TTT-STTTB-----------------------------TSEEEE
T ss_pred -ceEE---------------eeccccceecccccCCccccchhhc-----------------------------CeEEEE
Confidence 0000 0000001111221222333343332 222333
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEE----ecCCeEEEEECCCCceEEEEecC-CCCeEEEEEecCCCcEEEEEeCCC-cEEE
Q 000251 563 ILPTPRGVNMIVWSLDNRFVLAA----IMDCRICVWNAADGSLVHSLTGH-TESTYVLDVHPFNPRIAMSAGYDG-KTIV 636 (1784)
Q Consensus 563 l~~h~~~VtsVafSPDG~~LaSg----s~DGsI~VWDl~tgklv~~L~gH-~~~VtsLafSPdd~~lLaSgs~DG-~IrI 636 (1784)
+.....+ ..+..+|++++|.+. ...+.|.|+|..+.+.+..+... ...+..+.|++++..+.+|.-..+ .|.|
T Consensus 265 I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v 343 (369)
T PF02239_consen 265 IPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVV 343 (369)
T ss_dssp EE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEE
T ss_pred EECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEE
Confidence 4334444 677889999999987 44578999999999888887532 235889999996666666655444 8999
Q ss_pred EeCCCCceEEEEe
Q 000251 637 WDIWEGIPIRIYE 649 (1784)
Q Consensus 637 WDl~tG~~l~tl~ 649 (1784)
||..+.+.+..+.
T Consensus 344 ~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 344 YDAKTLKEKKRIP 356 (369)
T ss_dssp EETTTTEEEEEEE
T ss_pred EECCCcEEEEEEE
Confidence 9999999998887
|
... |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-12 Score=163.46 Aligned_cols=233 Identities=17% Similarity=0.145 Sum_probs=160.5
Q ss_pred CcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---CEEEEEECCCCCe--eEEecCCCCceEEEEecCC
Q 000251 291 DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLP--ISVLRGHTAAVTAIAFSPR 365 (1784)
Q Consensus 291 DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~D---GtIrVWDl~tgk~--i~~L~gH~~~VtsLafSPd 365 (1784)
+..|.|||..... .+.+..|...|.+++|+|||+.||.++.+ ..|++||+.++.. +..+.+| ...++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 5799999986544 56677788899999999999999987654 4799999988864 3333333 446899999
Q ss_pred CCccEEEEEE-eCCCcEEEE--ecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEee-CCc
Q 000251 366 PGSVYQLLSS-SDDGTCRIW--DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDT 441 (1784)
Q Consensus 366 g~~~~~LaSg-s~DGtIrIW--Dl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs-~DG 441 (1784)
++ .|+.+ +.+|.+.|| |+.++.. ..+ ..+...+...+|+|||+.|+.++ .+|
T Consensus 259 G~---~La~~~~~~g~~~Iy~~d~~~~~~-~~l--------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g 314 (429)
T PRK01742 259 GS---RLAFASSKDGVLNIYVMGANGGTP-SQL--------------------TSGAGNNTEPSWSPDGQSILFTSDRSG 314 (429)
T ss_pred CC---EEEEEEecCCcEEEEEEECCCCCe-Eee--------------------ccCCCCcCCEEECCCCCEEEEEECCCC
Confidence 97 66655 468876665 5554432 111 11334567899999999777655 578
Q ss_pred eEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEE
Q 000251 442 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 521 (1784)
Q Consensus 442 ~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIr 521 (1784)
...||++.... .....+ .+.. ..+.|+|++ +.|+.++.++ +.
T Consensus 315 ~~~I~~~~~~~--------~~~~~l-~~~~--~~~~~SpDG--------------------------~~ia~~~~~~-i~ 356 (429)
T PRK01742 315 SPQVYRMSASG--------GGASLV-GGRG--YSAQISADG--------------------------KTLVMINGDN-VV 356 (429)
T ss_pred CceEEEEECCC--------CCeEEe-cCCC--CCccCCCCC--------------------------CEEEEEcCCC-EE
Confidence 88888874311 111122 2332 356788886 5777666654 55
Q ss_pred EEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEEC--CCC
Q 000251 522 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA--ADG 599 (1784)
Q Consensus 522 IWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl--~tg 599 (1784)
+||+.++... .+... .....+.|+|||++|++++.++.+.+|.+ .+|
T Consensus 357 ~~Dl~~g~~~------------------------------~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G 405 (429)
T PRK01742 357 KQDLTSGSTE------------------------------VLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADG 405 (429)
T ss_pred EEECCCCCeE------------------------------EecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 6888753310 00000 11235689999999999999998888875 468
Q ss_pred ceEEEEecCCCCeEEEEEecC
Q 000251 600 SLVHSLTGHTESTYVLDVHPF 620 (1784)
Q Consensus 600 klv~~L~gH~~~VtsLafSPd 620 (1784)
..++.+.+|.+.+..++|+|.
T Consensus 406 ~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 406 RFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CceEEccCCCCCCCCcccCCC
Confidence 889999999998999999983
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=155.06 Aligned_cols=264 Identities=15% Similarity=0.188 Sum_probs=185.8
Q ss_pred cCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEE-EcC-------CCCEEEEEeCCCEEEEE
Q 000251 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLA-VSS-------NNALVASASNDCIIRVW 339 (1784)
Q Consensus 268 GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLa-fSp-------Dg~lLASGS~DGtIrVW 339 (1784)
.|...|.|+.|+.+...+.+++++..++-|++.+. ....+.-....|.... .-+ ....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 46677789999988877776665554444555432 2222221122221111 111 23478888999999998
Q ss_pred ECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000251 340 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 419 (1784)
Q Consensus 340 Dl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~ 419 (1784)
+ ..|+.-..+..|.+.|.+-.|+|+|. -|++++.||.|++|.- +|-+..++ ....
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~dGt---gLlt~GEDG~iKiWSr-sGMLRStl--------------------~Q~~ 145 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSPDGA---GLLTAGEDGVIKIWSR-SGMLRSTV--------------------VQNE 145 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCCCCc---eeeeecCCceEEEEec-cchHHHHH--------------------hhcC
Confidence 8 57888888899999999999999997 7999999999999974 33322221 2345
Q ss_pred CceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCC
Q 000251 420 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 499 (1784)
Q Consensus 420 ~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~ 499 (1784)
..|.|++|.|+..-++.+. .+.+.|=-+. +...+-....|.+-|.++.|++..
T Consensus 146 ~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~---------~n~k~i~WkAHDGiiL~~~W~~~s----------------- 198 (737)
T KOG1524|consen 146 ESIRCARWAPNSNSIVFCQ-GGHISIKPLA---------ANSKIIRWRAHDGLVLSLSWSTQS----------------- 198 (737)
T ss_pred ceeEEEEECCCCCceEEec-CCeEEEeecc---------cccceeEEeccCcEEEEeecCccc-----------------
Confidence 6799999999887655543 3445554442 244566789999999999999875
Q ss_pred ccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC
Q 000251 500 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 579 (1784)
Q Consensus 500 ~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG 579 (1784)
+.+++|+.|-..+|||.. +........|..+|++++|.|+
T Consensus 199 ---------~lI~sgGED~kfKvWD~~------------------------------G~~Lf~S~~~ey~ITSva~npd- 238 (737)
T KOG1524|consen 199 ---------NIIASGGEDFRFKIWDAQ------------------------------GANLFTSAAEEYAITSVAFNPE- 238 (737)
T ss_pred ---------cceeecCCceeEEeeccc------------------------------CcccccCChhccceeeeeeccc-
Confidence 799999999999999876 2334445568889999999999
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 000251 580 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 637 (1784)
Q Consensus 580 ~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIW 637 (1784)
+.++.++.+ ++++ -....+.|..++||+ ++..++.|...|.+.+=
T Consensus 239 ~~~~v~S~n-t~R~-----------~~p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 239 KDYLLWSYN-TARF-----------SSPRVGSIFNLSWSA-DGTQATCGTSTGQLIVA 283 (737)
T ss_pred cceeeeeee-eeee-----------cCCCccceEEEEEcC-CCceeeccccCceEEEe
Confidence 666766653 4441 123467899999999 66777778777776553
|
|
| >PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.6e-14 Score=134.85 Aligned_cols=82 Identities=17% Similarity=0.321 Sum_probs=71.9
Q ss_pred HHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCcHH
Q 000251 1677 SAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDL 1756 (1784)
Q Consensus 1677 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s~i 1756 (1784)
.++..|. .+...+.|..++.....|+|+++|+.||||++|++||++++|+++++|..||++||.||..||++++.+
T Consensus 3 ~il~~l~----~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 3 EILEELM----KHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHH----TSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHH----cCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 3444443 356778888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 000251 1757 STKIKR 1762 (1784)
Q Consensus 1757 ~~~a~~ 1762 (1784)
+++|++
T Consensus 79 ~~~A~~ 84 (84)
T PF00439_consen 79 YKAAEK 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999974
|
Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A .... |
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.5e-13 Score=158.05 Aligned_cols=203 Identities=19% Similarity=0.221 Sum_probs=153.5
Q ss_pred EEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecC-
Q 000251 274 YCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG- 352 (1784)
Q Consensus 274 t~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~g- 352 (1784)
.+++|+.+|..|++|+.||+++||++.....+.....|.+.|.+|.|+|||++|++.+.| ..+||++.+|.+++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999998888888888999999999999999999999999 899999999987776652
Q ss_pred -CCCceEEEEecCCCCcc--EEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECC
Q 000251 353 -HTAAVTAIAFSPRPGSV--YQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA 429 (1784)
Q Consensus 353 -H~~~VtsLafSPdg~~~--~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSp 429 (1784)
-......+.|+.++... +.++....-+.|+.|++........ ............|.+++.++
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~---------------l~~~~~~~~~~siSsl~VS~ 291 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNF---------------LRLRKKIKRFKSISSLAVSD 291 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccc---------------cchhhhhhccCcceeEEEcC
Confidence 23456678888776221 1233334456677777653321100 00111112344699999999
Q ss_pred CCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCC
Q 000251 430 NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 509 (1784)
Q Consensus 430 dG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~ 509 (1784)
+|+++|.|+.||.|.|++..+.+ .....-..|...|+.+.|+|+. +
T Consensus 292 dGkf~AlGT~dGsVai~~~~~lq--------~~~~vk~aH~~~VT~ltF~Pds--------------------------r 337 (398)
T KOG0771|consen 292 DGKFLALGTMDGSVAIYDAKSLQ--------RLQYVKEAHLGFVTGLTFSPDS--------------------------R 337 (398)
T ss_pred CCcEEEEeccCCcEEEEEeceee--------eeEeehhhheeeeeeEEEcCCc--------------------------C
Confidence 99999999999999999996532 1233446899999999999986 5
Q ss_pred eEEEEeCCCcEEEEeCC
Q 000251 510 NIVTCSRDGSAIIWIPR 526 (1784)
Q Consensus 510 ~LVSgS~DGtIrIWDl~ 526 (1784)
.+++.+.|.++.|..+.
T Consensus 338 ~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 338 YLASVSSDNEAAVTKLA 354 (398)
T ss_pred cccccccCCceeEEEEe
Confidence 66777777777776554
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.3e-12 Score=160.57 Aligned_cols=280 Identities=16% Similarity=0.224 Sum_probs=190.3
Q ss_pred EECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCC
Q 000251 339 WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 418 (1784)
Q Consensus 339 WDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h 418 (1784)
|++ .|..++.+..|...|..++.++... .+|++|+.||+|++|+.+.-...... ..........
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~--s~FvsgS~DGtVKvW~~~k~~~~~~s-------------~rS~ltys~~ 1097 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHT--SLFVSGSDDGTVKVWNLRKLEGEGGS-------------ARSELTYSPE 1097 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCC--ceEEEecCCceEEEeeehhhhcCcce-------------eeeeEEEecc
Confidence 664 6889999999999999999988763 28999999999999998743211000 0001111225
Q ss_pred CCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCC-CCceEE-EEccCcccccccccCCCCCC
Q 000251 419 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE-NDVNYV-QFSGCAVASRFSLADSSKED 496 (1784)
Q Consensus 419 ~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~-~~V~sL-afSpdglas~~~~~~s~~~~ 496 (1784)
...+.++.+.+.|..+|+++.||.|.+.++.-.... ............+. +.|..+ +|....
T Consensus 1098 ~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~--~~~~~~~ri~n~~~~g~vv~m~a~~~~~-------------- 1161 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVS--KRVATQVRIPNLKKDGVVVSMHAFTAIV-------------- 1161 (1431)
T ss_pred CCceEEEEeccCCCeEEEEcCCCeEEEEEccccccc--cceeeeeecccccCCCceEEeecccccc--------------
Confidence 667899999999999999999999999998542110 00011111111111 122222 111110
Q ss_pred CCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEc
Q 000251 497 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 576 (1784)
Q Consensus 497 ~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS 576 (1784)
. ...++.+..-+.|..||+++.. ..|.. ......+.|++++.+
T Consensus 1162 ---------~-S~~lvy~T~~~~iv~~D~r~~~-----~~w~l----------------------k~~~~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1162 ---------Q-SHVLVYATDLSRIVSWDTRMRH-----DAWRL----------------------KNQLRHGLVTSIVID 1204 (1431)
T ss_pred ---------c-ceeEEEEEeccceEEecchhhh-----hHHhh----------------------hcCccccceeEEEec
Confidence 0 1378888889999999998633 22221 122345679999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceEEEEe-cCCCCeEEEEEecCCC--cEEEEEe--CCCcEEEEeCCCCceEEEEecc
Q 000251 577 LDNRFVLAAIMDCRICVWNAADGSLVHSLT-GHTESTYVLDVHPFNP--RIAMSAG--YDGKTIVWDIWEGIPIRIYEIS 651 (1784)
Q Consensus 577 PDG~~LaSgs~DGsI~VWDl~tgklv~~L~-gH~~~VtsLafSPdd~--~lLaSgs--~DG~IrIWDl~tG~~l~tl~~~ 651 (1784)
|.+.++++|+..|.+.+||++-+.++..+. ++..+|..+..+|.-+ ...++++ ..+.|.+|++.+|.+..++...
T Consensus 1205 p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1205 PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred CCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 999999999999999999999998888764 4557788888888655 4555554 4778999999999887777644
Q ss_pred Cc-------------------ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 000251 652 RF-------------------RLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 687 (1784)
Q Consensus 652 ~~-------------------~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~~ 687 (1784)
.. ......+..-+..+.+|+.|+.|+.||....+..
T Consensus 1285 ~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1285 DGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred CCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 11 1112344445678889999999999998765543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-11 Score=146.96 Aligned_cols=322 Identities=15% Similarity=0.189 Sum_probs=209.7
Q ss_pred CCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE-----eC-----CCEEEEE
Q 000251 270 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASA-----SN-----DCIIRVW 339 (1784)
Q Consensus 270 ~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASG-----S~-----DGtIrVW 339 (1784)
...++..++|++|+++|.+. +..|+|++..++..+.+...- .++++.|+|-|.+|.+- .. .-.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 34477888999999888875 568999999988655444432 89999999999998763 11 2457899
Q ss_pred ECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000251 340 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 419 (1784)
Q Consensus 340 Dl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~ 419 (1784)
++.++.....+......-+++.|+.|.. |++--..+.|.+|++...+.... .-+.
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEs----l~arlv~nev~f~~~~~f~~~~~---------------------kl~~ 165 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDES----LAARLVSNEVQFYDLGSFKTIQH---------------------KLSV 165 (566)
T ss_pred eeccceehhheehhhhcCcccccccchh----hhhhhhcceEEEEecCCccceee---------------------eeec
Confidence 9999766555543333337899999975 44444456799999876332111 1245
Q ss_pred CceEEEEECCCC--CEEEE-----eeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCC
Q 000251 420 HQIFCCAFNANG--TVFVT-----GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 492 (1784)
Q Consensus 420 ~~V~sLafSpdG--~~Las-----Gs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s 492 (1784)
..|..+.++|.+ .++|+ +|.-+.|+||...-.. ....+..-.-....-..+.|++.|.
T Consensus 166 ~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~------~~~~~a~ksFFkadkvqm~WN~~gt--------- 230 (566)
T KOG2315|consen 166 SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG------QHQPVANKSFFKADKVQMKWNKLGT--------- 230 (566)
T ss_pred cceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc------ccchhhhccccccceeEEEeccCCc---------
Confidence 668888898874 34443 4556789999874111 1111111111122223455665542
Q ss_pred CCCCCCCccccccccCCeEEEEe--CCC---------cEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCce
Q 000251 493 SKEDSTPKFKNSWFCHDNIVTCS--RDG---------SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 561 (1784)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~LVSgS--~DG---------tIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~ 561 (1784)
.+|+..+ -|. ++.+.++. +....
T Consensus 231 ----------------~LLvLastdVDktn~SYYGEq~Lyll~t~------------------------------g~s~~ 264 (566)
T KOG2315|consen 231 ----------------ALLVLASTDVDKTNASYYGEQTLYLLATQ------------------------------GESVS 264 (566)
T ss_pred ----------------eEEEEEEEeecCCCccccccceEEEEEec------------------------------CceEE
Confidence 1232222 222 23333322 11222
Q ss_pred eccCCCCCeeEEEEcCCCCEEEE--EecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeC---CCcEEE
Q 000251 562 RILPTPRGVNMIVWSLDNRFVLA--AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY---DGKTIV 636 (1784)
Q Consensus 562 ~l~~h~~~VtsVafSPDG~~LaS--gs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~---DG~IrI 636 (1784)
.-....++|.+++|+++|+-+++ |-+-..+.|||++ +.++..+. .++-+++-|+| .+++|+.+|. -|.|-|
T Consensus 265 V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp-~g~ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 265 VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNP-HGNIILLAGFGNLPGDMEV 340 (566)
T ss_pred EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECC-CCCEEEEeecCCCCCceEE
Confidence 22345688999999999987655 6677889999984 66766654 56678899999 5566666664 478999
Q ss_pred EeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeC------CCeEEEEECCCCccc
Q 000251 637 WDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDD------VGQLYILNTGQGESQ 687 (1784)
Q Consensus 637 WDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~------DG~I~IWdl~sGe~~ 687 (1784)
||+.+.+++..+.... -+-+.|+|||.+++++.. |..++||+. +|..+
T Consensus 341 wDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l 394 (566)
T KOG2315|consen 341 WDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLL 394 (566)
T ss_pred EeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCcee
Confidence 9999999998887433 345799999999998743 788999997 45444
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.4e-13 Score=157.52 Aligned_cols=280 Identities=19% Similarity=0.288 Sum_probs=208.6
Q ss_pred CEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEec
Q 000251 272 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR 351 (1784)
Q Consensus 272 ~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~ 351 (1784)
.=+.+.|+.+|+.|+.|+.-|.|-.+|+.++.+...+. -...|.++.|-.+.+++|++ ....+.||| ..|..+..++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeehh
Confidence 44678899999999999999999999999999998886 35679999999999888887 466899999 6788888888
Q ss_pred CCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCC
Q 000251 352 GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 431 (1784)
Q Consensus 352 gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG 431 (1784)
.| ..|..+.|.|.. ++|++++..|.+..-|+.+|+++..+.. ..+.+..++-+|-.
T Consensus 208 ~~-~~v~rLeFLPyH---fLL~~~~~~G~L~Y~DVS~GklVa~~~t--------------------~~G~~~vm~qNP~N 263 (545)
T KOG1272|consen 208 RH-IRVARLEFLPYH---FLLVAASEAGFLKYQDVSTGKLVASIRT--------------------GAGRTDVMKQNPYN 263 (545)
T ss_pred hc-Cchhhhcccchh---heeeecccCCceEEEeechhhhhHHHHc--------------------cCCccchhhcCCcc
Confidence 65 679999999975 4888999999999999999987665532 22233344444444
Q ss_pred CEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeE
Q 000251 432 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 511 (1784)
Q Consensus 432 ~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~L 511 (1784)
..+-+|..
T Consensus 264 aVih~Ghs------------------------------------------------------------------------ 271 (545)
T KOG1272|consen 264 AVIHLGHS------------------------------------------------------------------------ 271 (545)
T ss_pred ceEEEcCC------------------------------------------------------------------------
Confidence 44444444
Q ss_pred EEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeE
Q 000251 512 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRI 591 (1784)
Q Consensus 512 VSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI 591 (1784)
.|+|.+|...+ ..++..+..|.++|.+|++.++|+|+||.+.|..|
T Consensus 272 -----nGtVSlWSP~s-----------------------------kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~ 317 (545)
T KOG1272|consen 272 -----NGTVSLWSPNS-----------------------------KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKV 317 (545)
T ss_pred -----CceEEecCCCC-----------------------------cchHHHHHhcCCCcceEEECCCCcEEeecccccce
Confidence 45555554332 23445566788899999999999999999999999
Q ss_pred EEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe-CCCC--ceEEEEecc--CcceEEEEEcCCCCE
Q 000251 592 CVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD-IWEG--IPIRIYEIS--RFRLVDGKFSPDGAS 666 (1784)
Q Consensus 592 ~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWD-l~tG--~~l~tl~~~--~~~ItslafSPDGk~ 666 (1784)
+|||+++...++++.. ......+++|. -+ +| +++....|.||. .-.+ ..-..+-.| .+.|.++.|.|-...
T Consensus 318 kIWDlR~~~ql~t~~t-p~~a~~ls~Sq-kg-lL-A~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDv 393 (545)
T KOG1272|consen 318 KIWDLRNFYQLHTYRT-PHPASNLSLSQ-KG-LL-ALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDV 393 (545)
T ss_pred eEeeeccccccceeec-CCCcccccccc-cc-ce-eeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHe
Confidence 9999999887777665 34567788875 32 33 455566899994 2221 121122122 347999999999999
Q ss_pred EEEEeCCCeEEEEECCCCcccc
Q 000251 667 IILSDDVGQLYILNTGQGESQK 688 (1784)
Q Consensus 667 LAsgs~DG~I~IWdl~sGe~~~ 688 (1784)
|-+|-..|--.|.=.++|++-.
T Consensus 394 LGIGH~~G~tsilVPGsGePN~ 415 (545)
T KOG1272|consen 394 LGIGHAGGITSILVPGSGEPNY 415 (545)
T ss_pred eeccccCCceeEeccCCCCCCc
Confidence 9999888877777777777643
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-12 Score=161.78 Aligned_cols=235 Identities=16% Similarity=0.102 Sum_probs=163.1
Q ss_pred CCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCC---CcEEEEecCCCcccceeecCCCCCcccCCCC
Q 000251 333 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD---GTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 409 (1784)
Q Consensus 333 DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~D---GtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~ 409 (1784)
+..|.+||.. |.....+..|...+.+++|+|+++ .|+.++.+ ..|.+||+.++.......
T Consensus 183 ~~~i~i~d~d-g~~~~~lt~~~~~v~~p~wSPDG~---~la~~s~~~~~~~i~i~dl~tg~~~~l~~------------- 245 (429)
T PRK01742 183 PYEVRVADYD-GFNQFIVNRSSQPLMSPAWSPDGS---KLAYVSFENKKSQLVVHDLRSGARKVVAS------------- 245 (429)
T ss_pred eEEEEEECCC-CCCceEeccCCCccccceEcCCCC---EEEEEEecCCCcEEEEEeCCCCceEEEec-------------
Confidence 4689999975 444566777888999999999997 67766543 469999998775321110
Q ss_pred CCCCCCCCCCCceEEEEECCCCCEEEEee-CCceEEEE--cCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccc
Q 000251 410 APSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVW--NACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 486 (1784)
Q Consensus 410 ~~~~s~~~h~~~V~sLafSpdG~~LasGs-~DG~IrVW--Dl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~ 486 (1784)
..+....++|+|||+.|+++. .+|.+.|| |+.++ .+..+..+...+....|+|++
T Consensus 246 --------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~----------~~~~lt~~~~~~~~~~wSpDG---- 303 (429)
T PRK01742 246 --------FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG----------TPSQLTSGAGNNTEPSWSPDG---- 303 (429)
T ss_pred --------CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCC----------CeEeeccCCCCcCCEEECCCC----
Confidence 011233579999999888765 57766655 54321 234556677778899999997
Q ss_pred ccccCCCCCCCCCccccccccCCeEE-EEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccC
Q 000251 487 FSLADSSKEDSTPKFKNSWFCHDNIV-TCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 565 (1784)
Q Consensus 487 ~~~~~s~~~~~~~~~~~~~~~~~~LV-SgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 565 (1784)
..|+ ++..+|...||++.... .....+ .
T Consensus 304 ----------------------~~i~f~s~~~g~~~I~~~~~~~----------------------------~~~~~l-~ 332 (429)
T PRK01742 304 ----------------------QSILFTSDRSGSPQVYRMSASG----------------------------GGASLV-G 332 (429)
T ss_pred ----------------------CEEEEEECCCCCceEEEEECCC----------------------------CCeEEe-c
Confidence 4444 44567889999775311 001111 1
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC--CCCc
Q 000251 566 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI--WEGI 643 (1784)
Q Consensus 566 h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl--~tG~ 643 (1784)
+.. ..++|+|||++|++++.++ +.+||+.+++.......+ ....+.|+| ++++|+.++.+|.+.+|.+ .+|.
T Consensus 333 ~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 333 GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGR 406 (429)
T ss_pred CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECC-CCCEEEEEEcCCCceEEEEEECCCC
Confidence 222 3468999999999887764 666999988765433332 235688999 6777888888998888876 3688
Q ss_pred eEEEEeccCcceEEEEEcCC
Q 000251 644 PIRIYEISRFRLVDGKFSPD 663 (1784)
Q Consensus 644 ~l~tl~~~~~~ItslafSPD 663 (1784)
.++.+..+.+.+...+|||-
T Consensus 407 ~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 407 FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ceEEccCCCCCCCCcccCCC
Confidence 88888877788889999984
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-12 Score=152.73 Aligned_cols=267 Identities=15% Similarity=0.201 Sum_probs=182.1
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEe-c----CCCCccEEEEEEeCCCcEEEE
Q 000251 310 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAF-S----PRPGSVYQLLSSSDDGTCRIW 384 (1784)
Q Consensus 310 gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLaf-S----Pdg~~~~~LaSgs~DGtIrIW 384 (1784)
.|...|.|+.|+.+...+.+++ |..+.+|.-.+......+.-....|...-+ - ..++....|+.++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4677788999998776666665 545555543332222222111121211111 1 112223478899999999887
Q ss_pred ecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCccee
Q 000251 385 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 464 (1784)
Q Consensus 385 Dl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~ 464 (1784)
+-. ++.. .....|.+.+.|-.|+|||.-|++++.||.|++|.-. +....
T Consensus 91 ~k~-~rVE--------------------~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs----------GMLRS 139 (737)
T KOG1524|consen 91 NKS-ARVE--------------------RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS----------GMLRS 139 (737)
T ss_pred ccc-chhh--------------------hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc----------chHHH
Confidence 632 2211 1234688889999999999999999999999999863 33344
Q ss_pred eecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccccccccccccc
Q 000251 465 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 544 (1784)
Q Consensus 465 ~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~ 544 (1784)
++......|.|++|.|+. ...+.+. .+.+.|=-+..
T Consensus 140 tl~Q~~~~v~c~~W~p~S-------------------------~~vl~c~--g~h~~IKpL~~----------------- 175 (737)
T KOG1524|consen 140 TVVQNEESIRCARWAPNS-------------------------NSIVFCQ--GGHISIKPLAA----------------- 175 (737)
T ss_pred HHhhcCceeEEEEECCCC-------------------------CceEEec--CCeEEEeeccc-----------------
Confidence 556677899999999986 2333333 23444432221
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcE
Q 000251 545 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRI 624 (1784)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~l 624 (1784)
.....+...|.+-|.++.|++....|++|+.|...+|||. -|..+..-..|..+|++++|.| + ..
T Consensus 176 ------------n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~np-d-~~ 240 (737)
T KOG1524|consen 176 ------------NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNP-E-KD 240 (737)
T ss_pred ------------ccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeecc-c-cc
Confidence 2233455678999999999999999999999999999996 5777777788999999999999 4 45
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEe-ccCcceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000251 625 AMSAGYDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILN 680 (1784)
Q Consensus 625 LaSgs~DG~IrIWDl~tG~~l~tl~-~~~~~ItslafSPDGk~LAsgs~DG~I~IWd 680 (1784)
++.++.. +++ |. ...+.|..++||+||..+++|+..|.+.+--
T Consensus 241 ~~v~S~n-t~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 241 YLLWSYN-TAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred eeeeeee-eee------------ecCCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 5555532 333 22 2346799999999999999999999886644
|
|
| >cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-13 Score=139.21 Aligned_cols=73 Identities=19% Similarity=0.294 Sum_probs=69.3
Q ss_pred cCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHhcCC
Q 000251 1703 QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSLK 1775 (1784)
Q Consensus 1703 ~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s~i~~~a~~l~~~~~~~i~~~~ 1775 (1784)
..|+|+.+|+.||||+||++||+++.|+++++|..||++|++||.+||+++|.++.+|+.|-+....-|.++.
T Consensus 35 ~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 35 KLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADSEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred cCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999999999999999999999999988888777654
|
ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-12 Score=153.59 Aligned_cols=259 Identities=16% Similarity=0.165 Sum_probs=170.5
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEe-cCCCCceEEEEecCCCCccEEEEEEeCCCcEE
Q 000251 304 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 382 (1784)
Q Consensus 304 ~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L-~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIr 382 (1784)
+.+.|.||.+.|.|++|+.+|.+|++|+.|-.|.|||.-.-+++..+ .||...|.++.|.|..++ ..+++|..|..|+
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnn-riv~sgAgDk~i~ 120 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNN-RIVLSGAGDKLIK 120 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCC-eEEEeccCcceEE
Confidence 34568899999999999999999999999999999999887877776 689999999999998654 4899999999999
Q ss_pred EEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCC-CEEEEeeCCceEEEEcCCCCCCCCCCC-CC
Q 000251 383 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQ-PN 460 (1784)
Q Consensus 383 IWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG-~~LasGs~DG~IrVWDl~tg~~~~s~~-~~ 460 (1784)
++|+...+.-..- ............|...|..|+..|++ ..|.+++.||+|+-||++.+....... -.
T Consensus 121 lfdl~~~~~~~~d----------~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~ 190 (758)
T KOG1310|consen 121 LFDLDSSKEGGMD----------HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP 190 (758)
T ss_pred EEecccccccccc----------cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence 9999753211100 00111223345677888999999998 889999999999999998643221111 11
Q ss_pred cceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccccccccc
Q 000251 461 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 540 (1784)
Q Consensus 461 ~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~ 540 (1784)
..+..+...--...++..+|.. +.+|++|+.|-.+++||.+.... .....|...
T Consensus 191 ~~l~ny~~~lielk~ltisp~r-------------------------p~~laVGgsdpfarLYD~Rr~lk-s~~s~~~~~ 244 (758)
T KOG1310|consen 191 SILVNYNPQLIELKCLTISPSR-------------------------PYYLAVGGSDPFARLYDRRRVLK-SFRSDGTMN 244 (758)
T ss_pred HHHHHhchhhheeeeeeecCCC-------------------------CceEEecCCCchhhhhhhhhhcc-CCCCCcccc
Confidence 1111122222344566666653 46899999999999999642110 011111111
Q ss_pred ccccCCCCCCCCCCCC---CCCcee----ccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEE
Q 000251 541 YHLKVPPPPMPPQPPR---GGPRQR----ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS 604 (1784)
Q Consensus 541 ~~l~~~~~~~~~~~~~---~~~~~~----l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~ 604 (1784)
++++....-.. ...... +......++-++|+|+|.-|++.-..-.|+++|+..++....
T Consensus 245 -----~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 245 -----TCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred -----CCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 01110000000 000000 111122367789999998877766566899999988765543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-11 Score=144.75 Aligned_cols=197 Identities=17% Similarity=0.183 Sum_probs=145.5
Q ss_pred EEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccc
Q 000251 423 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 502 (1784)
Q Consensus 423 ~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~ 502 (1784)
.+++|+.+|..|++|+.||++|||+... ...+.....|...|.++.|+|++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps---------~~t~l~e~~~~~eV~DL~FS~dg-------------------- 198 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS---------MLTILEEIAHHAEVKDLDFSPDG-------------------- 198 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc---------chhhhhhHhhcCccccceeCCCC--------------------
Confidence 7899999999999999999999999633 23455667899999999999997
Q ss_pred cccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC---
Q 000251 503 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN--- 579 (1784)
Q Consensus 503 ~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG--- 579 (1784)
..|++.+.| ..+||+..++....... -.........+.|+.|+
T Consensus 199 ------k~lasig~d-~~~VW~~~~g~~~a~~t---------------------------~~~k~~~~~~cRF~~d~~~~ 244 (398)
T KOG0771|consen 199 ------KFLASIGAD-SARVWSVNTGAALARKT---------------------------PFSKDEMFSSCRFSVDNAQE 244 (398)
T ss_pred ------cEEEEecCC-ceEEEEeccCchhhhcC---------------------------CcccchhhhhceecccCCCc
Confidence 689999999 99999999752111100 01122234456676666
Q ss_pred --CEEEEEecCCeEEEEECCCCc-----eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-cc
Q 000251 580 --RFVLAAIMDCRICVWNAADGS-----LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE-IS 651 (1784)
Q Consensus 580 --~~LaSgs~DGsI~VWDl~tgk-----lv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~-~~ 651 (1784)
..++....-+.|+.|++.... ...........|++++.++ ++++++.|+.||.|-|++..+-+++...+ .|
T Consensus 245 ~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH 323 (398)
T KOG0771|consen 245 TLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAH 323 (398)
T ss_pred eEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcEEEEEeceeeeeEeehhhh
Confidence 223333344556666654321 1111122234699999999 88999999999999999999888887765 56
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000251 652 RFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 683 (1784)
Q Consensus 652 ~~~ItslafSPDGk~LAsgs~DG~I~IWdl~s 683 (1784)
..-|+.+.|+||.+++++.+.+..+.|..+..
T Consensus 324 ~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 324 LGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 67899999999999999998888888888753
|
|
| >cd04369 Bromodomain Bromodomain | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.5e-13 Score=133.74 Aligned_cols=95 Identities=22% Similarity=0.364 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCC
Q 000251 1674 KLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRN 1753 (1784)
Q Consensus 1674 kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~ 1753 (1784)
.+..++..+.... ......|..++.....|+|+.+|++||||.+|++||++++|.++++|..|+++|+.||..||+++
T Consensus 4 ~~~~i~~~l~~~~--~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~ 81 (99)
T cd04369 4 KLRSLLDALKKLK--RDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPG 81 (99)
T ss_pred HHHHHHHHHHhhc--ccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 3445555553321 26677888888888999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHH
Q 000251 1754 TDLSTKIKRLSDLVTRT 1770 (1784)
Q Consensus 1754 s~i~~~a~~l~~~~~~~ 1770 (1784)
+.++++|..|...|.+.
T Consensus 82 ~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 82 SPIYKDAKKLEKLFEKL 98 (99)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.2e-11 Score=137.74 Aligned_cols=240 Identities=13% Similarity=0.200 Sum_probs=170.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCC--CcEEEEecCCC
Q 000251 312 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD--GTCRIWDARYS 389 (1784)
Q Consensus 312 ~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~D--GtIrIWDl~tg 389 (1784)
...+..+.|+.+...|..|+.|| .+++....-............|.-+-|+.. ++|..+.+ ..++++++..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS-----LvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS-----LVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc-----eeEEEecCCCceEEEEEcccC
Confidence 34577778999999999999998 577877654433222333445666777764 45555444 34888888877
Q ss_pred cccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCC
Q 000251 390 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 469 (1784)
Q Consensus 390 ~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH 469 (1784)
..+..+.. ...|.++.++.+ .|++.-.+. |+|||+++.+ .+.++..-
T Consensus 79 ~~ICe~~f---------------------pt~IL~VrmNr~--RLvV~Lee~-IyIydI~~Mk---------lLhTI~t~ 125 (391)
T KOG2110|consen 79 TTICEIFF---------------------PTSILAVRMNRK--RLVVCLEES-IYIYDIKDMK---------LLHTIETT 125 (391)
T ss_pred ceEEEEec---------------------CCceEEEEEccc--eEEEEEccc-EEEEecccce---------eehhhhcc
Confidence 76666643 334777777543 455544433 8888885421 11111100
Q ss_pred CCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCC
Q 000251 470 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 549 (1784)
Q Consensus 470 ~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~ 549 (1784)
T Consensus 126 -------------------------------------------------------------------------------- 125 (391)
T KOG2110|consen 126 -------------------------------------------------------------------------------- 125 (391)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE--EecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEE
Q 000251 550 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA--AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS 627 (1784)
Q Consensus 550 ~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS--gs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaS 627 (1784)
..+..++.++.++..+.|||. ....|.|.|||+.+-+.+..+..|.+.+-+|+|++ +|.+|||
T Consensus 126 --------------~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llAT 190 (391)
T KOG2110|consen 126 --------------PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLAT 190 (391)
T ss_pred --------------CCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEE
Confidence 112233444445555556655 22358899999999999999999999999999999 8899999
Q ss_pred EeCCCcE-EEEeCCCCceEEEEeccCc--ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 000251 628 AGYDGKT-IVWDIWEGIPIRIYEISRF--RLVDGKFSPDGASIILSDDVGQLYILNTGQGE 685 (1784)
Q Consensus 628 gs~DG~I-rIWDl~tG~~l~tl~~~~~--~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe 685 (1784)
|+..|+| +|+.+.+|+.+..|..+.. .|.+++|+||+++|++++..++|+||.+....
T Consensus 191 ASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 191 ASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 9999975 8999999999999986654 57899999999999999999999999997654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.5e-11 Score=135.64 Aligned_cols=318 Identities=14% Similarity=0.144 Sum_probs=208.8
Q ss_pred CCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC--CEEEEEECCCCCee
Q 000251 270 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND--CIIRVWRLPDGLPI 347 (1784)
Q Consensus 270 ~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~D--GtIrVWDl~tgk~i 347 (1784)
...|..+.|..+...|..|+.|| -++++................|.-+-|+ ..+||..+.+ ..+++.++..+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence 45677888999999999999998 5788876544322222233445566676 4466666654 45889998888777
Q ss_pred EEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEE
Q 000251 348 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 427 (1784)
Q Consensus 348 ~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLaf 427 (1784)
..+. ....|.+|.+..+ .|+++-.+. |.|||+++.+.+.++.. ..++...+.++++
T Consensus 82 Ce~~-fpt~IL~VrmNr~-----RLvV~Lee~-IyIydI~~MklLhTI~t-----------------~~~n~~gl~AlS~ 137 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNRK-----RLVVCLEES-IYIYDIKDMKLLHTIET-----------------TPPNPKGLCALSP 137 (391)
T ss_pred EEEe-cCCceEEEEEccc-----eEEEEEccc-EEEEecccceeehhhhc-----------------cCCCccceEeecc
Confidence 6665 5578999999875 566655544 99999999988877743 1234555777777
Q ss_pred CCCCCEEEEee--CCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCcccccc
Q 000251 428 NANGTVFVTGS--SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 505 (1784)
Q Consensus 428 SpdG~~LasGs--~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~ 505 (1784)
+..+.++|.-+ ..|.|.|||+.+ ...+..+..|.+.+-+++|+++|
T Consensus 138 n~~n~ylAyp~s~t~GdV~l~d~~n---------l~~v~~I~aH~~~lAalafs~~G----------------------- 185 (391)
T KOG2110|consen 138 NNANCYLAYPGSTTSGDVVLFDTIN---------LQPVNTINAHKGPLAALAFSPDG----------------------- 185 (391)
T ss_pred CCCCceEEecCCCCCceEEEEEccc---------ceeeeEEEecCCceeEEEECCCC-----------------------
Confidence 77777888643 368999999965 45677888999999999999998
Q ss_pred ccCCeEEEEeCCCc-EEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE
Q 000251 506 FCHDNIVTCSRDGS-AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 584 (1784)
Q Consensus 506 ~~~~~LVSgS~DGt-IrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS 584 (1784)
.+|||+|..|+ |||+.+.+++....+.+ + .....|.+++|+|++++|++
T Consensus 186 ---~llATASeKGTVIRVf~v~~G~kl~eFRR--------------------G-------~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 186 ---TLLATASEKGTVIRVFSVPEGQKLYEFRR--------------------G-------TYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred ---CEEEEeccCceEEEEEEcCCccEeeeeeC--------------------C-------ceeeEEEEEEECCCCCeEEE
Confidence 79999999998 68898876542211110 0 01346899999999999999
Q ss_pred EecCCeEEEEECCCCceEEEEecCCCCeEEEEE-ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCc---ceEEEEE
Q 000251 585 AIMDCRICVWNAADGSLVHSLTGHTESTYVLDV-HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF---RLVDGKF 660 (1784)
Q Consensus 585 gs~DGsI~VWDl~tgklv~~L~gH~~~VtsLaf-SPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~---~Itslaf 660 (1784)
.+..++|+||.+..-. ......+-....| .+ -.+.+.+---.+.-.+||.. +...+...... .+..+.=
T Consensus 236 sS~TeTVHiFKL~~~~----~~~~~~p~~~~~~~~~-~sk~~~sylps~V~~~~~~~--R~FAt~~l~~s~~~~~~~l~~ 308 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKVS----NNPPESPTAGTSWFGK-VSKAATSYLPSQVSSVLDQS--RKFATAKLPESGRKNICSLSS 308 (391)
T ss_pred ecCCCeEEEEEecccc----cCCCCCCCCCCcccch-hhhhhhhhcchhhhhhhhhc--cceeEEEccCCCccceEEeec
Confidence 9999999999986543 1111110000000 00 00000000001122335543 33333332222 2333333
Q ss_pred cCCCCEEEEEeCCCeEEEEECCC
Q 000251 661 SPDGASIILSDDVGQLYILNTGQ 683 (1784)
Q Consensus 661 SPDGk~LAsgs~DG~I~IWdl~s 683 (1784)
.+...++.+++.||.++.|.+..
T Consensus 309 ~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 309 IQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred cCCCCEEEEEEcCCeEEEEEcCC
Confidence 35788999999999999999853
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-10 Score=145.74 Aligned_cols=234 Identities=12% Similarity=0.020 Sum_probs=154.7
Q ss_pred cEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCc
Q 000251 292 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN---DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 368 (1784)
Q Consensus 292 GtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~---DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~ 368 (1784)
..|.|||...+. .+.+..+...+.+.+|+|||+.||..+. +..|.+|++.+|+... +....+.+..++|+||++
T Consensus 179 ~~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~- 255 (429)
T PRK03629 179 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGS- 255 (429)
T ss_pred eeEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCC-
Confidence 479999987554 3445556778999999999999887543 4579999998886433 222334455789999997
Q ss_pred cEEEEE-EeCCC--cEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCC-ceEE
Q 000251 369 VYQLLS-SSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD-TLAR 444 (1784)
Q Consensus 369 ~~~LaS-gs~DG--tIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~D-G~Ir 444 (1784)
.|+. .+.+| .|.+||+.++...... .....+...+|+|||+.|+..+.+ +...
T Consensus 256 --~La~~~~~~g~~~I~~~d~~tg~~~~lt---------------------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~ 312 (429)
T PRK03629 256 --KLAFALSKTGSLNLYVMDLASGQIRQVT---------------------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQ 312 (429)
T ss_pred --EEEEEEcCCCCcEEEEEECCCCCEEEcc---------------------CCCCCcCceEECCCCCEEEEEeCCCCCce
Confidence 5554 34455 4888999877532211 112345678999999988777654 4444
Q ss_pred EE--cCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeC-C--Cc
Q 000251 445 VW--NACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR-D--GS 519 (1784)
Q Consensus 445 VW--Dl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~-D--Gt 519 (1784)
|| ++.++ ....+..+...+....|+|+| +.|+..+. + ..
T Consensus 313 Iy~~d~~~g----------~~~~lt~~~~~~~~~~~SpDG--------------------------~~Ia~~~~~~g~~~ 356 (429)
T PRK03629 313 VYKVNINGG----------APQRITWEGSQNQDADVSSDG--------------------------KFMVMVSSNGGQQH 356 (429)
T ss_pred EEEEECCCC----------CeEEeecCCCCccCEEECCCC--------------------------CEEEEEEccCCCce
Confidence 55 55432 122333344455678899987 45555443 3 35
Q ss_pred EEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCe---EEEEEC
Q 000251 520 AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCR---ICVWNA 596 (1784)
Q Consensus 520 IrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGs---I~VWDl 596 (1784)
|.+||+.++.. ..+.. ........|+|||++|+.++.++. +.++++
T Consensus 357 I~~~dl~~g~~------------------------------~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 357 IAKQDLATGGV------------------------------QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred EEEEECCCCCe------------------------------EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 77888875331 01110 111235689999999999887764 677777
Q ss_pred CCCceEEEEecCCCCeEEEEEec
Q 000251 597 ADGSLVHSLTGHTESTYVLDVHP 619 (1784)
Q Consensus 597 ~tgklv~~L~gH~~~VtsLafSP 619 (1784)
+|.....+.+|.+.+...+|+|
T Consensus 406 -~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 406 -DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred -CCCCeEECccCCCCcCCcccCC
Confidence 6777788888888899999998
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.8e-10 Score=141.19 Aligned_cols=234 Identities=15% Similarity=0.076 Sum_probs=151.7
Q ss_pred CEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEe---CCCcEEEEecCCCcccceeecCCCCCcccCCCCC
Q 000251 334 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS---DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 410 (1784)
Q Consensus 334 GtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs---~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~ 410 (1784)
..|.+||...+.. +.+..+...+.+.+|+|||+ .|+..+ .+..|.+|++.+++......
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~---~la~~s~~~g~~~i~i~dl~~G~~~~l~~-------------- 240 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGS---KLAYVTFESGRSALVIQTLANGAVRQVAS-------------- 240 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCC---EEEEEEecCCCcEEEEEECCCCCeEEccC--------------
Confidence 3799999865443 44555677899999999997 555443 34579999998775321110
Q ss_pred CCCCCCCCCCceEEEEECCCCCEEEEe-eCCc--eEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccc
Q 000251 411 PSSSAGPQSHQIFCCAFNANGTVFVTG-SSDT--LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 487 (1784)
Q Consensus 411 ~~~s~~~h~~~V~sLafSpdG~~LasG-s~DG--~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~ 487 (1784)
....+...+|+|||+.|+.. +.+| .|++||+.++. +..+..+...+....|+|++
T Consensus 241 -------~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~----------~~~lt~~~~~~~~~~wSPDG----- 298 (429)
T PRK03629 241 -------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----------IRQVTDGRSNNTEPTWFPDS----- 298 (429)
T ss_pred -------CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC----------EEEccCCCCCcCceEECCCC-----
Confidence 11123457899999988765 3344 58889986532 23344444567889999987
Q ss_pred cccCCCCCCCCCccccccccCCeEEEEeC-CCcEEEE--eCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceecc
Q 000251 488 SLADSSKEDSTPKFKNSWFCHDNIVTCSR-DGSAIIW--IPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 564 (1784)
Q Consensus 488 ~~~~s~~~~~~~~~~~~~~~~~~LVSgS~-DGtIrIW--Dl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~ 564 (1784)
+.|+..+. +|...|| ++.++. ...+.
T Consensus 299 ---------------------~~I~f~s~~~g~~~Iy~~d~~~g~------------------------------~~~lt 327 (429)
T PRK03629 299 ---------------------QNLAYTSDQAGRPQVYKVNINGGA------------------------------PQRIT 327 (429)
T ss_pred ---------------------CEEEEEeCCCCCceEEEEECCCCC------------------------------eEEee
Confidence 55655554 4555665 443211 11222
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecC---CeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc---EEEEe
Q 000251 565 PTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK---TIVWD 638 (1784)
Q Consensus 565 ~h~~~VtsVafSPDG~~LaSgs~D---GsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~---IrIWD 638 (1784)
.....+...+|||||++|+..+.+ ..|++||+.+++.. .+... .......|+| ++++|+.++.++. +.+|+
T Consensus 328 ~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 328 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAP-NGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECC-CCCEEEEEEcCCCceEEEEEE
Confidence 222335568899999999886543 35889999888754 34322 2234678999 5666666666654 67778
Q ss_pred CCCCceEEEEeccCcceEEEEEcC
Q 000251 639 IWEGIPIRIYEISRFRLVDGKFSP 662 (1784)
Q Consensus 639 l~tG~~l~tl~~~~~~ItslafSP 662 (1784)
+ +|.....+..+.+.+...+|+|
T Consensus 405 ~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 405 T-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred C-CCCCeEECccCCCCcCCcccCC
Confidence 8 6777777777777888899987
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.7e-11 Score=140.83 Aligned_cols=290 Identities=15% Similarity=0.123 Sum_probs=194.1
Q ss_pred cCCCCeEEEEEcCCCCEE-EEEeCCCEEEEEECCCCCeeEEecCC-CCc-eEEEEecCCCCccEEEEEEeCCCcEEEEec
Q 000251 310 GHEGDITDLAVSSNNALV-ASASNDCIIRVWRLPDGLPISVLRGH-TAA-VTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386 (1784)
Q Consensus 310 gH~~~VtsLafSpDg~lL-ASGS~DGtIrVWDl~tgk~i~~L~gH-~~~-VtsLafSPdg~~~~~LaSgs~DGtIrIWDl 386 (1784)
.|...-+.|..+|||+|| |+|..--.|++||+.+-... +..| ... |.-.-++.|-. .++.-..|.+|.+-..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~S---K~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYS---KSVFLQNDRTIEFHAK 123 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchh---hheEeecCceeeehhh
Confidence 467788999999999965 67777889999998765432 2223 233 33333444432 4566667777776533
Q ss_pred CCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeee
Q 000251 387 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL 466 (1784)
Q Consensus 387 ~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l 466 (1784)
... -..+.+|. .-..++++.-..-|++++....|+-+++.. +..+..+
T Consensus 124 ~G~--hy~~RIP~---------------------~GRDm~y~~~scDly~~gsg~evYRlNLEq---------GrfL~P~ 171 (703)
T KOG2321|consen 124 YGR--HYRTRIPK---------------------FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQ---------GRFLNPF 171 (703)
T ss_pred cCe--eeeeecCc---------------------CCccccccCCCccEEEeecCcceEEEEccc---------ccccccc
Confidence 211 11222211 123455554333344455556688888865 3445556
Q ss_pred cCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCC
Q 000251 467 SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVP 546 (1784)
Q Consensus 467 ~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~ 546 (1784)
....+.+++|..++. +.+|++|+.+|.|-.||.++....+....-.. +.
T Consensus 172 ~~~~~~lN~v~in~~--------------------------hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-----v~ 220 (703)
T KOG2321|consen 172 ETDSGELNVVSINEE--------------------------HGLLACGTEDGVVEFWDPRDKSRVGTLDAASS-----VN 220 (703)
T ss_pred ccccccceeeeecCc--------------------------cceEEecccCceEEEecchhhhhheeeecccc-----cC
Confidence 666788999998876 36889999999999999997553332211000 00
Q ss_pred CCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEe-cCCCCeEEEEEecCCC-cE
Q 000251 547 PPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT-GHTESTYVLDVHPFNP-RI 624 (1784)
Q Consensus 547 ~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~-gH~~~VtsLafSPdd~-~l 624 (1784)
. .........|+++.|+.+|-.+++|+.+|.|.|||+++.+++..-. +..-+|..+.|.+.+. ..
T Consensus 221 s-------------~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~ 287 (703)
T KOG2321|consen 221 S-------------HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNK 287 (703)
T ss_pred C-------------CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCce
Confidence 0 0001122359999999999999999999999999999988876543 3345788899977543 34
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000251 625 AMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 682 (1784)
Q Consensus 625 LaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~ 682 (1784)
|+| .....++|||-.+|+....+. ....+.++++-|++-+++++-.++.+..|=+.
T Consensus 288 v~S-~Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 288 VVS-MDKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred EEe-cchHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 444 345678999999999999887 55569999999999999999888877666553
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-10 Score=133.23 Aligned_cols=264 Identities=18% Similarity=0.233 Sum_probs=165.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEec-CCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcc
Q 000251 313 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 391 (1784)
Q Consensus 313 ~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~-gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~ 391 (1784)
..+..++|++.-..+|++..|-.|++|+-.. +....++ .....|+|++|-|.+.. .|+.|+..| |+||.......
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsas--elavgCr~g-IciW~~s~tln 174 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSAS--ELAVGCRAG-ICIWSDSRTLN 174 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcc--eeeeeecce-eEEEEcCcccc
Confidence 4577888988666788999999999999766 4444443 34568999999998763 678888766 99998753321
Q ss_pred cce-eecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeC-CceEEEEcCCCCCCCCCCCCCcceeeecCC
Q 000251 392 SPR-IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGH 469 (1784)
Q Consensus 392 l~~-i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~-DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH 469 (1784)
..+ +.. +..........+....|+++.|.+||..+++++- +..|.|||..++.. +.....-
T Consensus 175 ~~r~~~~--------~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~---------~pL~~~g 237 (445)
T KOG2139|consen 175 ANRNIRM--------MSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK---------IPLIPKG 237 (445)
T ss_pred ccccccc--------ccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc---------ccccccC
Confidence 111 100 0011111112233478999999999999998875 67899999987542 1112234
Q ss_pred CCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCC
Q 000251 470 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 549 (1784)
Q Consensus 470 ~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~ 549 (1784)
-+.+.-+.|+|++ ++|++++.|+..++|+... .|...
T Consensus 238 lgg~slLkwSPdg--------------------------d~lfaAt~davfrlw~e~q--------~wt~e--------- 274 (445)
T KOG2139|consen 238 LGGFSLLKWSPDG--------------------------DVLFAATCDAVFRLWQENQ--------SWTKE--------- 274 (445)
T ss_pred CCceeeEEEcCCC--------------------------CEEEEecccceeeeehhcc--------cceec---------
Confidence 5678899999997 7999999999999996542 12211
Q ss_pred CCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEe
Q 000251 550 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG 629 (1784)
Q Consensus 550 ~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs 629 (1784)
+-....+.|...+|+|+|++|+.++.. .-+| +++.|...++.+.-.++
T Consensus 275 ------------rw~lgsgrvqtacWspcGsfLLf~~sg-sp~l-------------------ysl~f~~~~~~~~~~~~ 322 (445)
T KOG2139|consen 275 ------------RWILGSGRVQTACWSPCGSFLLFACSG-SPRL-------------------YSLTFDGEDSVFLRPQS 322 (445)
T ss_pred ------------ceeccCCceeeeeecCCCCEEEEEEcC-CceE-------------------EEEeecCCCccccCccc
Confidence 111123478899999999998776542 2233 33444321211111222
Q ss_pred CCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeC
Q 000251 630 YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDD 672 (1784)
Q Consensus 630 ~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~ 672 (1784)
.-..+.|-|+..-....--..-.+++.+++|.|.|.+||+.-.
T Consensus 323 ~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 323 IKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred ceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 2222333344211110000012457889999999999998744
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-10 Score=140.79 Aligned_cols=460 Identities=14% Similarity=0.142 Sum_probs=266.0
Q ss_pred CCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCC------------CEEEEEeCCCEEEE
Q 000251 271 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNN------------ALVASASNDCIIRV 338 (1784)
Q Consensus 271 ~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg------------~lLASGS~DGtIrV 338 (1784)
..-.++.|+|.| +||.|+. ..|.|-|..+.+.++++.-|...|+.+.|.|-. -+||++...|.|.|
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 335678899988 7888775 579999999999999999999999999998721 26788888899999
Q ss_pred EECCCCCeeEEecCCCCceEEEEecCCCCcc-EEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCC
Q 000251 339 WRLPDGLPISVLRGHTAAVTAIAFSPRPGSV-YQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 417 (1784)
Q Consensus 339 WDl~tgk~i~~L~gH~~~VtsLafSPdg~~~-~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~ 417 (1784)
||...+..+..+..|..+|..++|-+..... +.|++-....+|.+|+..+|+.......
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y-------------------- 153 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY-------------------- 153 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc--------------------
Confidence 9999999888899999999999998754322 4677777788999999999986554421
Q ss_pred CCCceEEEEECC-CCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCc-------eEEEEccCcccccccc
Q 000251 418 QSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDV-------NYVQFSGCAVASRFSL 489 (1784)
Q Consensus 418 h~~~V~sLafSp-dG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V-------~sLafSpdglas~~~~ 489 (1784)
......|+.+.| |.+.|..-+..|.+.+-+.-..+ ....+++.++.-..|...- +....+..
T Consensus 154 s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~s--ep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~-------- 223 (1062)
T KOG1912|consen 154 SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLS--EPDVPGKEFQITSDHSDLAHLERETATGNSTTST-------- 223 (1062)
T ss_pred CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCC--CCCCCceeEEEecCccchhhhhhhhhccccccCC--------
Confidence 233456788888 66777777778888777763221 2233445554444443310 00000000
Q ss_pred cCCCCCCCCCccccccc--cCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCC
Q 000251 490 ADSSKEDSTPKFKNSWF--CHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 567 (1784)
Q Consensus 490 ~~s~~~~~~~~~~~~~~--~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~ 567 (1784)
.........+...-+ .-..++-......+.|+|+.-.. +...+.-..
T Consensus 224 --~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~-----------------------------~l~vvpier 272 (1062)
T KOG1912|consen 224 --PASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC-----------------------------CLAVVPIER 272 (1062)
T ss_pred --CcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc-----------------------------eeEEEEecc
Confidence 000000000000000 11233334445567777776311 111222223
Q ss_pred CCeeEEEEcCCC--CEEEEEecCCeEEEEECCC----------------CceEEEEecC-CCCeEEEEEecCCCcEEEEE
Q 000251 568 RGVNMIVWSLDN--RFVLAAIMDCRICVWNAAD----------------GSLVHSLTGH-TESTYVLDVHPFNPRIAMSA 628 (1784)
Q Consensus 568 ~~VtsVafSPDG--~~LaSgs~DGsI~VWDl~t----------------gklv~~L~gH-~~~VtsLafSPdd~~lLaSg 628 (1784)
+.+.-+.|-|++ ..|++...||.+.||-.+. |..++.+..- .-.+...+..|.....++.-
T Consensus 273 ~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl 352 (1062)
T KOG1912|consen 273 GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVL 352 (1062)
T ss_pred CCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhh
Confidence 344455565655 4789999999999997654 2233322211 11223334445444444444
Q ss_pred eCCCcEEEEeCCCCceEEEEe-------------------------------ccCcceEEEEE-----------cCCC--
Q 000251 629 GYDGKTIVWDIWEGIPIRIYE-------------------------------ISRFRLVDGKF-----------SPDG-- 664 (1784)
Q Consensus 629 s~DG~IrIWDl~tG~~l~tl~-------------------------------~~~~~Itslaf-----------SPDG-- 664 (1784)
-.+|.+.+|.+.+|+.-.... .|..+.++... -|.|
T Consensus 353 ~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~ 432 (1062)
T KOG1912|consen 353 YSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNT 432 (1062)
T ss_pred hhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCc
Confidence 457889999988654321110 11222222211 1222
Q ss_pred -----CEEEEEeCCCeEEEEECCCCccccccc------cceeecCCCcceEEcc------CCceeecccc-cccCcCCCC
Q 000251 665 -----ASIILSDDVGQLYILNTGQGESQKDAK------YDQFFLGDYRPLVQDT------YGNVLDQETQ-LAPHRRNLQ 726 (1784)
Q Consensus 665 -----k~LAsgs~DG~I~IWdl~sGe~~~~~~------~~~~fs~D~r~Lv~d~------~g~vld~~tq-l~phl~~l~ 726 (1784)
.++|+|...|+|.++|+.++...+... ...-|.+.++.+.... .|.+.+.... .-+.+..
T Consensus 433 ~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGls-- 510 (1062)
T KOG1912|consen 433 PAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLS-- 510 (1062)
T ss_pred cceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccc--
Confidence 357789999999999999886543221 2234444444332211 1111110000 0000000
Q ss_pred CcccCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeecCCCcccccC---CCccccceeeeC-C
Q 000251 727 DPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMID---PLPEFIDVMDWE-P 802 (1784)
Q Consensus 727 ~~L~D~~~~p~p~~~Q~l~~~rr~~v~~iAfSPDG~~LAvg~d~s~~~~v~lw~l~~~~~li~---plp~~i~~~~ws-P 802 (1784)
..+..+....+..+..|-.|..|+|||+. -.+..+.+|++.+...+.. .+|. ++.|+|+ |
T Consensus 511 ------------k~fR~l~~~despI~~irvS~~~~yLai~---Fr~~plEiwd~kt~~~lr~mS~a~P~-it~leWsl~ 574 (1062)
T KOG1912|consen 511 ------------KRFRGLQKPDESPIRAIRVSSSGRYLAIL---FRREPLEIWDLKTLRMLRLMSLALPL-ITVLEWSLP 574 (1062)
T ss_pred ------------cccccCCCCCcCcceeeeecccCceEEEE---ecccchHHHhhccchHHHHHhhcCCc-EEEEeeccc
Confidence 11111111223446778889999999999 5667788999965543322 3454 6789999 6
Q ss_pred CCCcccCCC
Q 000251 803 ENEVQSDDN 811 (1784)
Q Consensus 803 Dg~~ls~~~ 811 (1784)
...-+....
T Consensus 575 ~~~si~qk~ 583 (1062)
T KOG1912|consen 575 KHPSIKQKE 583 (1062)
T ss_pred CCCCccccc
Confidence 655554443
|
|
| >cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.9e-12 Score=126.33 Aligned_cols=100 Identities=15% Similarity=0.269 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHhhhccc--ccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhh
Q 000251 1672 RNKLLSAFAKLEQSANRV--QDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESY 1749 (1784)
Q Consensus 1672 r~kl~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~f 1749 (1784)
+..+.+.+..+.+..... .-+-+|..++. ..++|+.+|+.||||.+|++||+++.|+++++|..|+.+||.||++|
T Consensus 5 q~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~y 82 (110)
T cd05526 5 QELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARRL 82 (110)
T ss_pred HHHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHh
Confidence 444555555554433111 11235566666 56788999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHhc
Q 000251 1750 FGRNTDLSTKIKRLSDLVTRTLSS 1773 (1784)
Q Consensus 1750 N~~~s~i~~~a~~l~~~~~~~i~~ 1773 (1784)
|.++|.|+..|..|+++|.++-.+
T Consensus 83 N~~~S~iy~dA~eLq~~f~~~rd~ 106 (110)
T cd05526 83 SRTDSEIYEDAVELQQFFIKIRDE 106 (110)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999976443
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-10 Score=144.30 Aligned_cols=235 Identities=15% Similarity=0.049 Sum_probs=150.3
Q ss_pred CEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeC---CCcEEEEecCCCcccceeecCCCCCcccCCCCC
Q 000251 334 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD---DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 410 (1784)
Q Consensus 334 GtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~---DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~ 410 (1784)
..|.+||.. +.....+..+...+.+.+|+|+++ .|+.++. ...|.+||+.++......
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~---~la~~s~~~~~~~l~~~dl~~g~~~~l~--------------- 244 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGK---KLAYVSFERGRSAIYVQDLATGQRELVA--------------- 244 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCC---EEEEEecCCCCcEEEEEECCCCCEEEec---------------
Confidence 469999975 555556666778899999999997 6666653 346999999877532111
Q ss_pred CCCCCCCCCCceEEEEECCCCCEEEE-eeCCc--eEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccc
Q 000251 411 PSSSAGPQSHQIFCCAFNANGTVFVT-GSSDT--LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 487 (1784)
Q Consensus 411 ~~~s~~~h~~~V~sLafSpdG~~Las-Gs~DG--~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~ 487 (1784)
...+...+++|+|||+.|+. .+.+| .|++||+.++. +..+..+......++|+|++
T Consensus 245 ------~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~----------~~~lt~~~~~~~~~~~spDG----- 303 (433)
T PRK04922 245 ------SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ----------LTRLTNHFGIDTEPTWAPDG----- 303 (433)
T ss_pred ------cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC----------eEECccCCCCccceEECCCC-----
Confidence 01122346799999987764 44444 59999986532 33444555556678999987
Q ss_pred cccCCCCCCCCCccccccccCCeEEEEe-CCCc--EEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceecc
Q 000251 488 SLADSSKEDSTPKFKNSWFCHDNIVTCS-RDGS--AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 564 (1784)
Q Consensus 488 ~~~~s~~~~~~~~~~~~~~~~~~LVSgS-~DGt--IrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~ 564 (1784)
..|+.++ .+|. |.++++.++. ..++.
T Consensus 304 ---------------------~~l~f~sd~~g~~~iy~~dl~~g~------------------------------~~~lt 332 (433)
T PRK04922 304 ---------------------KSIYFTSDRGGRPQIYRVAASGGS------------------------------AERLT 332 (433)
T ss_pred ---------------------CEEEEEECCCCCceEEEEECCCCC------------------------------eEEee
Confidence 4555544 4555 4444544321 11111
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCC---eEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEeC
Q 000251 565 PTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD--GKTIVWDI 639 (1784)
Q Consensus 565 ~h~~~VtsVafSPDG~~LaSgs~DG---sI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~D--G~IrIWDl 639 (1784)
........++|||||++|+..+.++ .|.+||+.+++.. .+. +........|+|++..++++.... +.|.++++
T Consensus 333 ~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 333 FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 1222344689999999998865443 6999999888765 343 222445679999555555544433 35778888
Q ss_pred CCCceEEEEeccCcceEEEEEcC
Q 000251 640 WEGIPIRIYEISRFRLVDGKFSP 662 (1784)
Q Consensus 640 ~tG~~l~tl~~~~~~ItslafSP 662 (1784)
+|.....+..+.+.+...+|+|
T Consensus 411 -~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 411 -DGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CCCceEEcccCCCCCCCCccCC
Confidence 4555666655566777788887
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-11 Score=138.64 Aligned_cols=230 Identities=13% Similarity=0.114 Sum_probs=147.9
Q ss_pred EEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceee
Q 000251 317 DLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY 396 (1784)
Q Consensus 317 sLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~ 396 (1784)
-++|||+|++||+++.- .+.|-|..+-+..+.+.. -..|.-|.|..+.- +.|.....++.|.+|++...+....+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~--~ilC~~yk~~~vqvwsl~Qpew~ckId 88 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSC--HILCVAYKDPKVQVWSLVQPEWYCKID 88 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccce--eeeeeeeccceEEEEEeecceeEEEec
Confidence 45799999999999765 788888877765554432 35677788988754 467777889999999998776544442
Q ss_pred cCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEE-EEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceE
Q 000251 397 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVF-VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNY 475 (1784)
Q Consensus 397 l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~L-asGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~s 475 (1784)
.....+.+++|||||+.| .+..-+-.|.||.+.+.+ ...+.-....+..
T Consensus 89 --------------------eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~----------~~~~~~pK~~~kg 138 (447)
T KOG4497|consen 89 --------------------EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK----------GYLLPHPKTNVKG 138 (447)
T ss_pred --------------------cCCCcceeeeECCCcceEeeeecceeEEEEEEeccce----------eEEecccccCcee
Confidence 245568899999999654 555668899999997532 2223334456788
Q ss_pred EEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCC
Q 000251 476 VQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 555 (1784)
Q Consensus 476 LafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~ 555 (1784)
++|+++| .+.+.++.-.......+. ....|.-..
T Consensus 139 ~~f~~dg--------------------------~f~ai~sRrDCkdyv~i~------~c~~W~ll~-------------- 172 (447)
T KOG4497|consen 139 YAFHPDG--------------------------QFCAILSRRDCKDYVQIS------SCKAWILLK-------------- 172 (447)
T ss_pred EEECCCC--------------------------ceeeeeecccHHHHHHHH------hhHHHHHHH--------------
Confidence 9999987 344433332111111110 011222111
Q ss_pred CCCCceeccCCCCCeeEEEEcCCCCEEEEEec--CCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 000251 556 RGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM--DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK 633 (1784)
Q Consensus 556 ~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~--DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~ 633 (1784)
.+....-..+.+-|||||..||+-.. +-.|..|.- .-.+..++|+| .+++|+.|+.|+.
T Consensus 173 ------~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~------------~lG~k~v~wsP-~~qflavGsyD~~ 233 (447)
T KOG4497|consen 173 ------EFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER------------GLGLKFVEWSP-CNQFLAVGSYDQM 233 (447)
T ss_pred ------hcCCCcccccCceECCCCcEEEEecchhhheeeeeee------------ccceeEEEecc-ccceEEeeccchh
Confidence 11122335677899999988775321 222222221 23478899999 8899999999999
Q ss_pred EEEEeCCCCceE
Q 000251 634 TIVWDIWEGIPI 645 (1784)
Q Consensus 634 IrIWDl~tG~~l 645 (1784)
++|.+--+-+..
T Consensus 234 lrvlnh~tWk~f 245 (447)
T KOG4497|consen 234 LRVLNHFTWKPF 245 (447)
T ss_pred hhhhceeeeeeh
Confidence 988765444433
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-10 Score=143.72 Aligned_cols=235 Identities=14% Similarity=0.057 Sum_probs=154.5
Q ss_pred cEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---CEEEEEECCCCCeeEEecCCCCceEEEEecCCCCc
Q 000251 292 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 368 (1784)
Q Consensus 292 GtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~D---GtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~ 368 (1784)
..|.|||.. +...+.+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++... +..+.+...+++|+|+++
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~- 260 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGR- 260 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCC-
Confidence 479999986 44455666677889999999999999987743 479999998886543 334455566889999997
Q ss_pred cEEEEEEeCCC--cEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeC-Cce--E
Q 000251 369 VYQLLSSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTL--A 443 (1784)
Q Consensus 369 ~~~LaSgs~DG--tIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~-DG~--I 443 (1784)
.++++.+.+| .|.+||+.++.... +. .+.......+|+|||+.|+.++. +|. |
T Consensus 261 -~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt--------------------~~~~~~~~~~~spDG~~l~f~sd~~g~~~i 318 (433)
T PRK04922 261 -RLALTLSRDGNPEIYVMDLGSRQLTR-LT--------------------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQI 318 (433)
T ss_pred -EEEEEEeCCCCceEEEEECCCCCeEE-Cc--------------------cCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 2334555555 58999998775322 10 11223456799999998887764 444 6
Q ss_pred EEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCC-C--cE
Q 000251 444 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD-G--SA 520 (1784)
Q Consensus 444 rVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~D-G--tI 520 (1784)
+++++.++. ...+..+......++|+|++ +.|+..+.+ + .|
T Consensus 319 y~~dl~~g~----------~~~lt~~g~~~~~~~~SpDG--------------------------~~Ia~~~~~~~~~~I 362 (433)
T PRK04922 319 YRVAASGGS----------AERLTFQGNYNARASVSPDG--------------------------KKIAMVHGSGGQYRI 362 (433)
T ss_pred EEEECCCCC----------eEEeecCCCCccCEEECCCC--------------------------CEEEEEECCCCceeE
Confidence 666664321 12222233344568999987 456554433 2 58
Q ss_pred EEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecC---CeEEEEECC
Q 000251 521 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAA 597 (1784)
Q Consensus 521 rIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~D---GsI~VWDl~ 597 (1784)
.+||+.++... .+ .+......+.|+|||++|+..+.+ +.|.++++.
T Consensus 363 ~v~d~~~g~~~------------------------------~L-t~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 363 AVMDLSTGSVR------------------------------TL-TPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred EEEECCCCCeE------------------------------EC-CCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 89988753310 11 111123346899999998876653 468888884
Q ss_pred CCceEEEEecCCCCeEEEEEec
Q 000251 598 DGSLVHSLTGHTESTYVLDVHP 619 (1784)
Q Consensus 598 tgklv~~L~gH~~~VtsLafSP 619 (1784)
|.....+..+.+.+..++|+|
T Consensus 412 -g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 412 -GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CCceEEcccCCCCCCCCccCC
Confidence 556666766667788888887
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-10 Score=137.64 Aligned_cols=287 Identities=12% Similarity=0.149 Sum_probs=195.1
Q ss_pred cCCCCEEEEEECCCCCEE-EEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCe
Q 000251 268 GHRNAVYCAIFDRSGRYV-ITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP 346 (1784)
Q Consensus 268 GH~~~Vt~VaFSPDG~~L-ATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~ 346 (1784)
+|....+.|..+|||+|| |||..--.|++||+....+...-.-....|.-.-++.|-..++.-..|.+|-+... -|..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-cCee
Confidence 477888999999999987 67777889999999876654443333455666666667666777777888877642 2321
Q ss_pred eEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEE
Q 000251 347 ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 426 (1784)
Q Consensus 347 i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLa 426 (1784)
... + -...-..++++.-.- -|++++....|.-++++.|.++..+.+ ..+.+++|.
T Consensus 128 y~~-R-IP~~GRDm~y~~~sc---Dly~~gsg~evYRlNLEqGrfL~P~~~--------------------~~~~lN~v~ 182 (703)
T KOG2321|consen 128 YRT-R-IPKFGRDMKYHKPSC---DLYLVGSGSEVYRLNLEQGRFLNPFET--------------------DSGELNVVS 182 (703)
T ss_pred eee-e-cCcCCccccccCCCc---cEEEeecCcceEEEEcccccccccccc--------------------ccccceeee
Confidence 111 1 011223444443322 355555556788899999988776632 346689999
Q ss_pred ECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCC-----CceEEEEccCcccccccccCCCCCCCCCcc
Q 000251 427 FNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN-----DVNYVQFSGCAVASRFSLADSSKEDSTPKF 501 (1784)
Q Consensus 427 fSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~-----~V~sLafSpdglas~~~~~~s~~~~~~~~~ 501 (1784)
.++-..+|++|+.+|.|..||.+........... ..+..|.+ .|+++.|+.+|+
T Consensus 183 in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~---~~v~s~pg~~~~~svTal~F~d~gL------------------ 241 (703)
T KOG2321|consen 183 INEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA---SSVNSHPGGDAAPSVTALKFRDDGL------------------ 241 (703)
T ss_pred ecCccceEEecccCceEEEecchhhhhheeeecc---cccCCCccccccCcceEEEecCCce------------------
Confidence 9999999999999999999999875433222211 11223333 499999998773
Q ss_pred ccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC--C
Q 000251 502 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD--N 579 (1784)
Q Consensus 502 ~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD--G 579 (1784)
.+++|+.+|.|.|||+++.+.. +..-.....+|..+.|-+. +
T Consensus 242 --------~~aVGts~G~v~iyDLRa~~pl----------------------------~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 242 --------HVAVGTSTGSVLIYDLRASKPL----------------------------LVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred --------eEEeeccCCcEEEEEcccCCce----------------------------eecccCCccceeeecccccCCC
Confidence 7999999999999999974421 1111223356788888665 3
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000251 580 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 640 (1784)
Q Consensus 580 ~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 640 (1784)
..|++. ....++|||-.+|+....+....+ +..+++-| ++-++++|-.++.+..|=+.
T Consensus 286 ~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~-lND~C~~p-~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 286 NKVVSM-DKRILKIWDECTGKPMASIEPTSD-LNDFCFVP-GSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred ceEEec-chHHhhhcccccCCceeeccccCC-cCceeeec-CCceEEEecCCCcceeEEcc
Confidence 344444 345799999999999998875444 99999999 55666788777777666553
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-10 Score=131.45 Aligned_cols=255 Identities=14% Similarity=0.170 Sum_probs=173.2
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCC---CeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEec
Q 000251 310 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386 (1784)
Q Consensus 310 gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg---k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl 386 (1784)
--..+|+|.||++|++.+|.+.....|.||..... ++..++..|...|++|.|.|..+ .|++++.|..-.+|..
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn---rIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN---RIVTCSHDRNAYVWTQ 84 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC---ceeEccCCCCcccccc
Confidence 34578999999999999999999999999987654 46788999999999999999987 8999999999999998
Q ss_pred -CCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceee
Q 000251 387 -RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 465 (1784)
Q Consensus 387 -~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~ 465 (1784)
..+...+++.+ ..++..++++.|+|.++.||+|+....|.||-+...+.. .-....
T Consensus 85 ~~~~~WkptlvL------------------lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW-----WVsKhi 141 (361)
T KOG1523|consen 85 PSGGTWKPTLVL------------------LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW-----WVSKHI 141 (361)
T ss_pred CCCCeeccceeE------------------EEeccceeeEeecCcCceEEeccCccEEEEEEEecccce-----ehhhhh
Confidence 55555554432 346778999999999999999999999999988532110 000111
Q ss_pred ecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccC
Q 000251 466 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKV 545 (1784)
Q Consensus 466 l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~ 545 (1784)
-..+...|.++.|.|+. -.|++|+.|+..+|+..--
T Consensus 142 kkPirStv~sldWhpnn--------------------------VLlaaGs~D~k~rVfSayI------------------ 177 (361)
T KOG1523|consen 142 KKPIRSTVTSLDWHPNN--------------------------VLLAAGSTDGKCRVFSAYI------------------ 177 (361)
T ss_pred CCccccceeeeeccCCc--------------------------ceecccccCcceeEEEEee------------------
Confidence 22334455666666553 2455555666665553210
Q ss_pred CCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEE
Q 000251 546 PPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIA 625 (1784)
Q Consensus 546 ~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lL 625 (1784)
+.+.... +-+|-|. .+.-|+++..+....+.|..+.|+| .+..|
T Consensus 178 ---------------K~Vdekp------ap~pWgs--------------k~PFG~lm~E~~~~ggwvh~v~fs~-sG~~l 221 (361)
T KOG1523|consen 178 ---------------KGVDEKP------APTPWGS--------------KMPFGQLMSEASSSGGWVHGVLFSP-SGNRL 221 (361)
T ss_pred ---------------eccccCC------CCCCCcc--------------CCcHHHHHHhhccCCCceeeeEeCC-CCCEe
Confidence 0000000 0001110 0112455666656678899999999 55666
Q ss_pred EEEeCCCcEEEEeCCCCc-eEEEEeccCcceEEEEEcCCCCEEEEE
Q 000251 626 MSAGYDGKTIVWDIWEGI-PIRIYEISRFRLVDGKFSPDGASIILS 670 (1784)
Q Consensus 626 aSgs~DG~IrIWDl~tG~-~l~tl~~~~~~ItslafSPDGk~LAsg 670 (1784)
+-.++|..|.+-|..... .+..+.....+..++.|-.+...+++|
T Consensus 222 awv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag 267 (361)
T KOG1523|consen 222 AWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAG 267 (361)
T ss_pred eEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecC
Confidence 677899999999987664 444454455677777776665544443
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-10 Score=138.79 Aligned_cols=232 Identities=15% Similarity=0.173 Sum_probs=149.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCe----eE--EecCCCCceEEEEe--cCCCCccEEEEEEeCCCcEEEEe
Q 000251 314 DITDLAVSSNNALVASASNDCIIRVWRLPDGLP----IS--VLRGHTAAVTAIAF--SPRPGSVYQLLSSSDDGTCRIWD 385 (1784)
Q Consensus 314 ~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~----i~--~L~gH~~~VtsLaf--SPdg~~~~~LaSgs~DGtIrIWD 385 (1784)
.++...++-.|.+|+-.- ...+.+|+...+.. +. .+.+ ...+|-+| .++.+...-|+.|-.-|.|.+.|
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccC--CCCceecccccccCCCCcceEEeeccCceEEec
Confidence 345555555666665543 34688888764322 21 1222 12233334 22222223678888889999998
Q ss_pred cCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCC-CEEEEeeCCceEEEEcCCCCC-----CCCCCCC
Q 000251 386 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPN-----TDDSDQP 459 (1784)
Q Consensus 386 l~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG-~~LasGs~DG~IrVWDl~tg~-----~~~s~~~ 459 (1784)
.........+.. ........|+|+.|-|.+ ..|+++..+|.+++||..-.- .......
T Consensus 202 p~~~~~sklfne----------------~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~ 265 (636)
T KOG2394|consen 202 PINFEVSKLFNE----------------ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKD 265 (636)
T ss_pred chhhHHHHhhhh----------------cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCC
Confidence 765322221110 011234679999999954 567777889999999763210 0000000
Q ss_pred C--------------cceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeC
Q 000251 460 N--------------HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIP 525 (1784)
Q Consensus 460 ~--------------~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl 525 (1784)
. .++..+.--.+.|+.++|+|+| .+|++.+.||.++|||+
T Consensus 266 ~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG--------------------------~~LA~VSqDGfLRvF~f 319 (636)
T KOG2394|consen 266 GDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG--------------------------KYLATVSQDGFLRIFDF 319 (636)
T ss_pred CCeeEEeeeeccccCCccceeEeccccccceeEcCCC--------------------------ceEEEEecCceEEEeec
Confidence 0 1111222224467777777776 79999999999999999
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEE
Q 000251 526 RSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL 605 (1784)
Q Consensus 526 ~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L 605 (1784)
.+.+..+ .+..--+...||+|||||+||++|+.|--|.||.+..++.+..-
T Consensus 320 dt~eLlg-----------------------------~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG 370 (636)
T KOG2394|consen 320 DTQELLG-----------------------------VMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG 370 (636)
T ss_pred cHHHHHH-----------------------------HHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec
Confidence 8643221 12223367899999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEec
Q 000251 606 TGHTESTYVLDVHP 619 (1784)
Q Consensus 606 ~gH~~~VtsLafSP 619 (1784)
.||...|..|+|.|
T Consensus 371 qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 371 QGHKSWVSVVAFDP 384 (636)
T ss_pred cccccceeeEeecc
Confidence 99999999999973
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.1e-10 Score=140.66 Aligned_cols=234 Identities=14% Similarity=0.068 Sum_probs=155.0
Q ss_pred cEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCc
Q 000251 292 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN---DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 368 (1784)
Q Consensus 292 GtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~---DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~ 368 (1784)
..|.+||.. |...+.+..|...|.+.+|+|||+.|+..+. +..|.+||+.+|... .+..+.+.+.+.+|+||++
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~- 258 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR- 258 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC-
Confidence 479999985 4555667778889999999999999988764 468999999888653 4555667888999999997
Q ss_pred cEEEEEEeCCCc--EEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeC-Cc--eE
Q 000251 369 VYQLLSSSDDGT--CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DT--LA 443 (1784)
Q Consensus 369 ~~~LaSgs~DGt--IrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~-DG--~I 443 (1784)
.++++.+.+|. |.+||+.++... .+. .+.......+|+|||+.|+..+. +| .|
T Consensus 259 -~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt--------------------~~~~~~~~~~~spDG~~i~f~s~~~g~~~I 316 (435)
T PRK05137 259 -KVVMSLSQGGNTDIYTMDLRSGTTT-RLT--------------------DSPAIDTSPSYSPDGSQIVFESDRSGSPQL 316 (435)
T ss_pred -EEEEEEecCCCceEEEEECCCCceE-Ecc--------------------CCCCccCceeEcCCCCEEEEEECCCCCCeE
Confidence 23456666665 667788776532 111 12233556899999998887764 33 57
Q ss_pred EEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCC---CcE
Q 000251 444 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD---GSA 520 (1784)
Q Consensus 444 rVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~D---GtI 520 (1784)
++|++..+ ....+..+...+....|+|++ +.|+..+.+ ..|
T Consensus 317 y~~d~~g~----------~~~~lt~~~~~~~~~~~SpdG--------------------------~~ia~~~~~~~~~~i 360 (435)
T PRK05137 317 YVMNADGS----------NPRRISFGGGRYSTPVWSPRG--------------------------DLIAFTKQGGGQFSI 360 (435)
T ss_pred EEEECCCC----------CeEEeecCCCcccCeEECCCC--------------------------CEEEEEEcCCCceEE
Confidence 77787532 122333344556678899987 556554432 357
Q ss_pred EEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecC------CeEEEE
Q 000251 521 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD------CRICVW 594 (1784)
Q Consensus 521 rIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~D------GsI~VW 594 (1784)
.+||+.++. ...+ .....+..+.|+|||++|+..+.+ ..|+++
T Consensus 361 ~~~d~~~~~------------------------------~~~l-t~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 361 GVMKPDGSG------------------------------ERIL-TSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred EEEECCCCc------------------------------eEec-cCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence 777765321 0001 111235667999999998876543 368888
Q ss_pred ECCCCceEEEEecCCCCeEEEEEec
Q 000251 595 NAADGSLVHSLTGHTESTYVLDVHP 619 (1784)
Q Consensus 595 Dl~tgklv~~L~gH~~~VtsLafSP 619 (1784)
++..+.. ..+. ..+.+...+|+|
T Consensus 410 dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 410 DLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred ECCCCce-EEcc-CCCCccCcccCC
Confidence 8866554 4454 244567778877
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-10 Score=139.26 Aligned_cols=197 Identities=11% Similarity=0.138 Sum_probs=141.6
Q ss_pred CCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceee--ecCCCCCceEEEEccCcccccccccCCCCCCCCCcccccc
Q 000251 428 NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV--LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 505 (1784)
Q Consensus 428 SpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~--l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~ 505 (1784)
.+.|--+++|-.-|.|.++|...... ..+.. ..-....|+++.|-|..
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~-------sklfne~r~i~ktsvT~ikWvpg~----------------------- 231 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEV-------SKLFNEERLINKSSVTCIKWVPGS----------------------- 231 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHH-------HHhhhhcccccccceEEEEEEeCC-----------------------
Confidence 45777788888889999988743111 01000 11123689999999875
Q ss_pred ccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCC----CCCCCCCCceeccCCCCCeeEEEEcCCCCE
Q 000251 506 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMP----PQPPRGGPRQRILPTPRGVNMIVWSLDNRF 581 (1784)
Q Consensus 506 ~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~----~~~~~~~~~~~l~~h~~~VtsVafSPDG~~ 581 (1784)
...++.+-.+|.+.++|..-... .....|.. ++. ...+. .......++.+..-....|+.++|||||++
T Consensus 232 --~~~Fl~a~~sGnlyly~~~~~~~-~t~p~~~~---~k~-~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~ 304 (636)
T KOG2394|consen 232 --DSLFLVAHASGNLYLYDKEIVCG-ATAPSYQA---LKD-GDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKY 304 (636)
T ss_pred --CceEEEEEecCceEEeecccccc-CCCCcccc---cCC-CCeeEEeeeeccccCCccceeEeccccccceeEcCCCce
Confidence 46788888999999997642110 00000000 000 00000 000011334444445568999999999999
Q ss_pred EEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEc
Q 000251 582 VLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFS 661 (1784)
Q Consensus 582 LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafS 661 (1784)
||+.+.||.++|||..+.+++..++.--+...|++||| |+++|++||.|-.|.||.+..++.+..-++|...|..|+|.
T Consensus 305 LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 305 LATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 99999999999999999999888887888899999999 88999999999999999999999999999999999999998
Q ss_pred C
Q 000251 662 P 662 (1784)
Q Consensus 662 P 662 (1784)
|
T Consensus 384 p 384 (636)
T KOG2394|consen 384 P 384 (636)
T ss_pred c
Confidence 5
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.3e-10 Score=128.63 Aligned_cols=284 Identities=14% Similarity=0.216 Sum_probs=183.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCC-C----eeEEecCCC------------CceEEEEecCCCCccEEEEE
Q 000251 312 EGDITDLAVSSNNALVASASNDCIIRVWRLPDG-L----PISVLRGHT------------AAVTAIAFSPRPGSVYQLLS 374 (1784)
Q Consensus 312 ~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg-k----~i~~L~gH~------------~~VtsLafSPdg~~~~~LaS 374 (1784)
..-|.+|.|...|.+||+|..+|.|.++.-... + ....++.|. ..|..+.|.++++.. .++.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a-~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA-EFLL 103 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc-EEEE
Confidence 456899999999999999999999999964322 1 233445554 358889999987654 6777
Q ss_pred EeCCCcEEEEecCCCcccce-eecCC--CCCccc-------C------CCCCCCCCCCCCCCceEEEEECCCCCEEEEee
Q 000251 375 SSDDGTCRIWDARYSQFSPR-IYIPR--PSDAVA-------G------RNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 438 (1784)
Q Consensus 375 gs~DGtIrIWDl~tg~~l~~-i~l~~--~~~~~~-------g------~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs 438 (1784)
.+.|.+|++|.+........ ..++. +...+. + .......-...|...|.+|.++.|+..++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 78899999998875433220 00000 000000 0 0000011234677889999999999988877
Q ss_pred CCceEEEEcCCCCCCCCCCCCCcceeeecCC-----CCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEE
Q 000251 439 SDTLARVWNACKPNTDDSDQPNHEIDVLSGH-----ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT 513 (1784)
Q Consensus 439 ~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH-----~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVS 513 (1784)
.|=.|.+|++.-... .. .+.-+..+ +.-|++..|+|.. .+.|+-
T Consensus 183 DdLRINLWnlei~d~-----sF-nIVDIKP~nmEeLteVITsaEFhp~~-------------------------cn~f~Y 231 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQ-----SF-NIVDIKPANMEELTEVITSAEFHPHH-------------------------CNVFVY 231 (433)
T ss_pred cceeeeeccccccCC-----ce-eEEEccccCHHHHHHHHhhhccCHhH-------------------------ccEEEE
Confidence 477899999854221 11 11111222 3346677777753 368888
Q ss_pred EeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEE
Q 000251 514 CSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICV 593 (1784)
Q Consensus 514 gS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~V 593 (1784)
.+..|+|++.|++.....- ....+...+.......-+..--..|..+.|+++|+|+++-.. -+|+|
T Consensus 232 SSSKGtIrLcDmR~~aLCd-------------~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~ 297 (433)
T KOG1354|consen 232 SSSKGTIRLCDMRQSALCD-------------AHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKL 297 (433)
T ss_pred ecCCCcEEEeechhhhhhc-------------chhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEE
Confidence 9999999999999532110 011111111122222222333456889999999999998754 58999
Q ss_pred EEC-CCCceEEEEecCC------------CCe---EEEEEecCCCcEEEEEeCCCcEEEEeCCCCc
Q 000251 594 WNA-ADGSLVHSLTGHT------------EST---YVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI 643 (1784)
Q Consensus 594 WDl-~tgklv~~L~gH~------------~~V---tsLafSPdd~~lLaSgs~DG~IrIWDl~tG~ 643 (1784)
||+ ...+++.++.-|. +.| ..++|+- +..+++||+....++++++..|.
T Consensus 298 wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 298 WDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCc
Confidence 999 5677777776653 223 4577877 56788999999999999977664
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-10 Score=141.21 Aligned_cols=236 Identities=15% Similarity=0.112 Sum_probs=153.6
Q ss_pred cEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---CEEEEEECCCCCeeEEecCCCCceEEEEecCCCCc
Q 000251 292 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 368 (1784)
Q Consensus 292 GtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~D---GtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~ 368 (1784)
..|.+||.. |.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+|+... +....+.+.+.+|+||++
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~- 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGR- 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC-
Confidence 468888874 55555666778899999999999999887643 469999999887643 333446677899999997
Q ss_pred cEEE-EEEeCCCcEEEEecC--CCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeC-CceEE
Q 000251 369 VYQL-LSSSDDGTCRIWDAR--YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLAR 444 (1784)
Q Consensus 369 ~~~L-aSgs~DGtIrIWDl~--tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~-DG~Ir 444 (1784)
.| ++.+.+|...||.+. ++. ...+ ..+........|+|||+.|+..+. +|...
T Consensus 253 --~la~~~~~~g~~~Iy~~d~~~~~-~~~l--------------------t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~ 309 (427)
T PRK02889 253 --TLAVALSRDGNSQIYTVNADGSG-LRRL--------------------TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQ 309 (427)
T ss_pred --EEEEEEccCCCceEEEEECCCCC-cEEC--------------------CCCCCCCcCeEEcCCCCEEEEEecCCCCcE
Confidence 45 466778887777653 332 1111 112223456789999998876654 45666
Q ss_pred EEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCC---cEE
Q 000251 445 VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG---SAI 521 (1784)
Q Consensus 445 VWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DG---tIr 521 (1784)
||.+.... . ....+..+........|+|+| +.|+..+.++ .|.
T Consensus 310 Iy~~~~~~-------g-~~~~lt~~g~~~~~~~~SpDG--------------------------~~Ia~~s~~~g~~~I~ 355 (427)
T PRK02889 310 IYRMPASG-------G-AAQRVTFTGSYNTSPRISPDG--------------------------KLLAYISRVGGAFKLY 355 (427)
T ss_pred EEEEECCC-------C-ceEEEecCCCCcCceEECCCC--------------------------CEEEEEEccCCcEEEE
Confidence 66553110 1 111222222334467889887 5666655543 689
Q ss_pred EEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCC---eEEEEECCC
Q 000251 522 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAAD 598 (1784)
Q Consensus 522 IWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DG---sI~VWDl~t 598 (1784)
+||+.+++. ..+.. ......+.|+|||++|+.++.++ .+.+.++ +
T Consensus 356 v~d~~~g~~------------------------------~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~ 403 (427)
T PRK02889 356 VQDLATGQV------------------------------TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-D 403 (427)
T ss_pred EEECCCCCe------------------------------EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-C
Confidence 999875331 01111 11234678999999998877554 3666676 5
Q ss_pred CceEEEEecCCCCeEEEEEec
Q 000251 599 GSLVHSLTGHTESTYVLDVHP 619 (1784)
Q Consensus 599 gklv~~L~gH~~~VtsLafSP 619 (1784)
|.....+..+.+.+...+|+|
T Consensus 404 g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 404 GRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred CCceEEeecCCCCCCCCccCC
Confidence 777777777778888889988
|
|
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.8e-12 Score=153.91 Aligned_cols=92 Identities=17% Similarity=0.282 Sum_probs=86.0
Q ss_pred hcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHH
Q 000251 1686 ANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSD 1765 (1784)
Q Consensus 1686 ~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s~i~~~a~~l~~ 1765 (1784)
.......+.|+.++.....|+||++|+.||||++|+++|+++.|+++++|+.|++|||+||.+||+|++.++.+|+.|++
T Consensus 160 ~~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~ 239 (371)
T COG5076 160 RDGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEK 239 (371)
T ss_pred ccccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHH
Confidence 34445567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCC
Q 000251 1766 LVTRTLSSLKAP 1777 (1784)
Q Consensus 1766 ~~~~~i~~~~~~ 1777 (1784)
.|.+.|+.++..
T Consensus 240 ~~~~~i~~~~~~ 251 (371)
T COG5076 240 YFLKLIEEIPEE 251 (371)
T ss_pred HHHHHHHhcccc
Confidence 999999987764
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6e-10 Score=140.37 Aligned_cols=240 Identities=14% Similarity=0.078 Sum_probs=151.5
Q ss_pred CEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCC---CcEEEEecCCCcccceeecCCCCCcccCCCCC
Q 000251 334 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD---GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 410 (1784)
Q Consensus 334 GtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~D---GtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~ 410 (1784)
..|.+||. +|.....+..+...+.+.+|+||++ .|+.++.+ ..|.+||+.+++.....
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~---~la~~s~~~~~~~I~~~dl~~g~~~~l~--------------- 236 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGT---KLAYVSFESKKPVVYVHDLATGRRRVVA--------------- 236 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCC---EEEEEEccCCCcEEEEEECCCCCEEEee---------------
Confidence 46777786 5555566667788999999999997 66665532 45999999887632211
Q ss_pred CCCCCCCCCCceEEEEECCCCCEEEE-eeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccc
Q 000251 411 PSSSAGPQSHQIFCCAFNANGTVFVT-GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 489 (1784)
Q Consensus 411 ~~~s~~~h~~~V~sLafSpdG~~Las-Gs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~ 489 (1784)
...+.+.+.+|+|||+.|+. .+.+|...||.+... ...+..+..+...+....|+|+|
T Consensus 237 ------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~--------~~~~~~lt~~~~~~~~~~wSpDG------- 295 (427)
T PRK02889 237 ------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD--------GSGLRRLTQSSGIDTEPFFSPDG------- 295 (427)
T ss_pred ------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECC--------CCCcEECCCCCCCCcCeEEcCCC-------
Confidence 01223457899999988864 566777666655321 11233444555556778899987
Q ss_pred cCCCCCCCCCccccccccCCeEEEEe-CCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCC
Q 000251 490 ADSSKEDSTPKFKNSWFCHDNIVTCS-RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR 568 (1784)
Q Consensus 490 ~~s~~~~~~~~~~~~~~~~~~LVSgS-~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~ 568 (1784)
..|+..+ .+|...||.+.... .....+.....
T Consensus 296 -------------------~~l~f~s~~~g~~~Iy~~~~~~----------------------------g~~~~lt~~g~ 328 (427)
T PRK02889 296 -------------------RSIYFTSDRGGAPQIYRMPASG----------------------------GAAQRVTFTGS 328 (427)
T ss_pred -------------------CEEEEEecCCCCcEEEEEECCC----------------------------CceEEEecCCC
Confidence 4555444 45777777654210 00111111112
Q ss_pred CeeEEEEcCCCCEEEEEecCC---eEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEeCCCCc
Q 000251 569 GVNMIVWSLDNRFVLAAIMDC---RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK--TIVWDIWEGI 643 (1784)
Q Consensus 569 ~VtsVafSPDG~~LaSgs~DG---sI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~--IrIWDl~tG~ 643 (1784)
.....+|||||++|+..+.++ .|.+||+.+++......+ .....+.|+|++..++++....|. +.+.++ +|.
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~ 405 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGR 405 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCC
Confidence 234578999999999877654 699999988876543322 234678999955555555544443 455566 566
Q ss_pred eEEEEeccCcceEEEEEcCC
Q 000251 644 PIRIYEISRFRLVDGKFSPD 663 (1784)
Q Consensus 644 ~l~tl~~~~~~ItslafSPD 663 (1784)
....+..+.+.+...+|+|-
T Consensus 406 ~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 406 IKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ceEEeecCCCCCCCCccCCC
Confidence 66666656667777888873
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.3e-09 Score=126.10 Aligned_cols=339 Identities=13% Similarity=0.127 Sum_probs=210.7
Q ss_pred eEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC------
Q 000251 261 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDC------ 334 (1784)
Q Consensus 261 k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DG------ 334 (1784)
....++..-.-++..+.|||.|++|++....| |.+|.-..+..+..+. ...|..+.|+|.+++|.+-+..+
T Consensus 23 ~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~ 99 (561)
T COG5354 23 VIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEI 99 (561)
T ss_pred cccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhh
Confidence 33344444667899999999999999887654 9999988777666655 35799999999999999876443
Q ss_pred ---------EEEEEECCCCCeeEEecCCCCc--eE-EEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCC
Q 000251 335 ---------IIRVWRLPDGLPISVLRGHTAA--VT-AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 402 (1784)
Q Consensus 335 ---------tIrVWDl~tgk~i~~L~gH~~~--Vt-sLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~ 402 (1784)
.+.|||+.+|..+..+.+-..+ .+ -+.|+-+.. ++|-. ....+.|+++ ++.....-
T Consensus 100 e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~---y~ARv-v~~sl~i~e~-t~n~~~~p------- 167 (561)
T COG5354 100 EISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK---YVARV-VGSSLYIHEI-TDNIEEHP------- 167 (561)
T ss_pred ccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecch---hhhhh-ccCeEEEEec-CCccccCc-------
Confidence 4999999999999988776655 55 678988876 33322 2345899997 44322110
Q ss_pred cccCCCCCCCCCCCCCCCceEEEEECCCC--CEEEE-----eeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceE
Q 000251 403 AVAGRNMAPSSSAGPQSHQIFCCAFNANG--TVFVT-----GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNY 475 (1784)
Q Consensus 403 ~~~g~~~~~~~s~~~h~~~V~sLafSpdG--~~Las-----Gs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~s 475 (1784)
. .......|...+|+|.| ..||. ++..+.++||.+-... .+..-.-..-.-..
T Consensus 168 ---------~--~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s---------~l~tk~lfk~~~~q 227 (561)
T COG5354 168 ---------F--KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS---------VLVTKNLFKVSGVQ 227 (561)
T ss_pred ---------h--hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC---------eeeeeeeEeecccE
Confidence 0 00123457888888864 33443 4567788888874321 11111111112234
Q ss_pred EEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCC
Q 000251 476 VQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 555 (1784)
Q Consensus 476 LafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~ 555 (1784)
+.|.+.|-......... . +...+++ ....+.|+++..
T Consensus 228 LkW~~~g~~ll~l~~t~-----~-ksnKsyf---------gesnLyl~~~~e---------------------------- 264 (561)
T COG5354 228 LKWQVLGKYLLVLVMTH-----T-KSNKSYF---------GESNLYLLRITE---------------------------- 264 (561)
T ss_pred EEEecCCceEEEEEEEe-----e-eccccee---------ccceEEEEeecc----------------------------
Confidence 55555441100000000 0 0000000 112344444431
Q ss_pred CCCCceeccCCCCCeeEEEEcCCCCEEEE--EecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCC--
Q 000251 556 RGGPRQRILPTPRGVNMIVWSLDNRFVLA--AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD-- 631 (1784)
Q Consensus 556 ~~~~~~~l~~h~~~VtsVafSPDG~~LaS--gs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~D-- 631 (1784)
..+.......++|..++|.|.++.+++ |-++-.+.++|+... +...+ ....-..+.|+| ..++++.+|.|
T Consensus 265 --~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp-~~r~il~agF~nl 338 (561)
T COG5354 265 --RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSP-HERYILFAGFDNL 338 (561)
T ss_pred --cccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccC-cccEEEEecCCcc
Confidence 011111245678999999999988766 458888999998755 44443 334446788999 66777777765
Q ss_pred -CcEEEEeCCCCceEE-EEeccCcceEEEEEcCCCCEEEEE------eCCCeEEEEECCCCc
Q 000251 632 -GKTIVWDIWEGIPIR-IYEISRFRLVDGKFSPDGASIILS------DDVGQLYILNTGQGE 685 (1784)
Q Consensus 632 -G~IrIWDl~tG~~l~-tl~~~~~~ItslafSPDGk~LAsg------s~DG~I~IWdl~sGe 685 (1784)
|.|-|||......+. .+.+. ...-+.|+|||+++-+. -.|..|.||++....
T Consensus 339 ~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 339 QGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred ccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 679999997665444 55432 34557899999998875 337889999986543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-09 Score=122.96 Aligned_cols=177 Identities=18% Similarity=0.277 Sum_probs=128.5
Q ss_pred CCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCC-EEEEEeCCCEEEEEECCC----C
Q 000251 271 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG-HEGDITDLAVSSNNA-LVASASNDCIIRVWRLPD----G 344 (1784)
Q Consensus 271 ~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~g-H~~~VtsLafSpDg~-lLASGS~DGtIrVWDl~t----g 344 (1784)
..+..++|++.-..+|++..|-.|+||+-.. ++...++. ....|+|++|-|.+. -|+.|+.. -|.||.... +
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 4577788998777788899999999999766 55555542 456899999999654 67777655 599997632 1
Q ss_pred Ce----------eEEecCCCCceEEEEecCCCCccEEEEEEe-CCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCC
Q 000251 345 LP----------ISVLRGHTAAVTAIAFSPRPGSVYQLLSSS-DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 413 (1784)
Q Consensus 345 k~----------i~~L~gH~~~VtsLafSPdg~~~~~LaSgs-~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~ 413 (1784)
.. +....+| .+|++++|.+|+. .|++++ .|..|.|||..++..+....
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt---~l~tAS~gsssi~iWdpdtg~~~pL~~----------------- 235 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT---ILVTASFGSSSIMIWDPDTGQKIPLIP----------------- 235 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCC---EEeecccCcceEEEEcCCCCCcccccc-----------------
Confidence 11 1122344 7899999999987 777776 46789999999998655431
Q ss_pred CCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCc
Q 000251 414 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 482 (1784)
Q Consensus 414 s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg 482 (1784)
...+.+.-+.|||||.+|++++-|+..++|..... ........+ .+.|...+|+|+|
T Consensus 236 ---~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~--------wt~erw~lg-sgrvqtacWspcG 292 (445)
T KOG2139|consen 236 ---KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS--------WTKERWILG-SGRVQTACWSPCG 292 (445)
T ss_pred ---cCCCceeeEEEcCCCCEEEEecccceeeeehhccc--------ceecceecc-CCceeeeeecCCC
Confidence 13455788999999999999999999999965321 112222222 3489999999998
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.9e-09 Score=119.12 Aligned_cols=239 Identities=13% Similarity=0.174 Sum_probs=156.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCC--ceEEEEecCCCCccEEEEEEeCC------CcEEEEe
Q 000251 314 DITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTA--AVTAIAFSPRPGSVYQLLSSSDD------GTCRIWD 385 (1784)
Q Consensus 314 ~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~--~VtsLafSPdg~~~~~LaSgs~D------GtIrIWD 385 (1784)
...+++|+.|..-+++|..+| .+||++.--+.....+.+.+ .+.-+-|--+ .+.++||.. ..|.|||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N----~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSN----YLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhc----eEEEecCCCCCCCCCceEEEEe
Confidence 455699999999999988776 89999865333222222222 2222333222 133444433 4699999
Q ss_pred cCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceee
Q 000251 386 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 465 (1784)
Q Consensus 386 l~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~ 465 (1784)
=....++.++. ....|.++.+.++ .|++.- .+.|+||..... .+.+..
T Consensus 82 D~k~~~i~el~---------------------f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n--------~k~l~~ 129 (346)
T KOG2111|consen 82 DLKERCIIELS---------------------FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDN--------PKLLHV 129 (346)
T ss_pred cccCcEEEEEE---------------------eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCC--------hhheee
Confidence 55555444443 3556889999876 344443 578999988421 222222
Q ss_pred ecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEE-EeCCCcEEEEeCCCCCCCccccccccccccc
Q 000251 466 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT-CSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 544 (1784)
Q Consensus 466 l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVS-gS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~ 544 (1784)
+....++=--++..|.. ....||. |-.-|.|+|-|+...+
T Consensus 130 ~et~~NPkGlC~~~~~~------------------------~k~~LafPg~k~GqvQi~dL~~~~--------------- 170 (346)
T KOG2111|consen 130 IETRSNPKGLCSLCPTS------------------------NKSLLAFPGFKTGQVQIVDLASTK--------------- 170 (346)
T ss_pred eecccCCCceEeecCCC------------------------CceEEEcCCCccceEEEEEhhhcC---------------
Confidence 22222111122222221 0124443 3456999999987522
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCe-EEEEECCCCceEEEEecC--CCCeEEEEEecCC
Q 000251 545 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCR-ICVWNAADGSLVHSLTGH--TESTYVLDVHPFN 621 (1784)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGs-I~VWDl~tgklv~~L~gH--~~~VtsLafSPdd 621 (1784)
..+...+..|...|.|++++.+|..|||++..|+ |+|||..+|+++..++.. ...|++|+||| +
T Consensus 171 ------------~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~ 237 (346)
T KOG2111|consen 171 ------------PNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-N 237 (346)
T ss_pred ------------cCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-C
Confidence 1133567789999999999999999999999998 899999999999998743 35699999999 8
Q ss_pred CcEEEEEeCCCcEEEEeCCC
Q 000251 622 PRIAMSAGYDGKTIVWDIWE 641 (1784)
Q Consensus 622 ~~lLaSgs~DG~IrIWDl~t 641 (1784)
..+|++++..|+|.|+.+..
T Consensus 238 ~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ccEEEEEcCCCeEEEEEeec
Confidence 88999999999999998865
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.6e-10 Score=131.65 Aligned_cols=275 Identities=13% Similarity=0.133 Sum_probs=181.5
Q ss_pred CCCCeEEEEEcCCCC--EEEEEeCCCEEEEEECCCCCeeE------EecCCCCceEEEEecCCCCccEEEEEEeCCCcEE
Q 000251 311 HEGDITDLAVSSNNA--LVASASNDCIIRVWRLPDGLPIS------VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 382 (1784)
Q Consensus 311 H~~~VtsLafSpDg~--lLASGS~DGtIrVWDl~tgk~i~------~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIr 382 (1784)
-...|..++|.-+++ .|...+.+..+....+....... .....+++|..++.... .|++|-.+|.+.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg-----~Litc~~sG~l~ 128 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG-----TLITCVSSGNLQ 128 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCC-----EEEEEecCCcEE
Confidence 345677777776554 44444456666666665554333 33445677777776543 799999999999
Q ss_pred EEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCC-CEEEEeeCC--ceEEEEcCCCCCCCCCCCC
Q 000251 383 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSD--TLARVWNACKPNTDDSDQP 459 (1784)
Q Consensus 383 IWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG-~~LasGs~D--G~IrVWDl~tg~~~~s~~~ 459 (1784)
+|....+........ ......++..+.-++.. .++|+||.. ..+.|||+...+.......
T Consensus 129 ~~~~k~~d~hss~l~-----------------~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN 191 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLI-----------------KLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKN 191 (412)
T ss_pred EEeccCCccccccce-----------------eeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccC
Confidence 999886542211100 00112334555555543 466669888 8899999965322111100
Q ss_pred CcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccc
Q 000251 460 NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQ 539 (1784)
Q Consensus 460 ~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~ 539 (1784)
...=..-..-.-.++++.|.+.. .+..||+++.-+.+++||.+.++
T Consensus 192 vpnD~L~LrVPvW~tdi~Fl~g~------------------------~~~~fat~T~~hqvR~YDt~~qR---------- 237 (412)
T KOG3881|consen 192 VPNDRLGLRVPVWITDIRFLEGS------------------------PNYKFATITRYHQVRLYDTRHQR---------- 237 (412)
T ss_pred CCCccccceeeeeeccceecCCC------------------------CCceEEEEecceeEEEecCcccC----------
Confidence 00000000001234455555431 13689999999999999998644
Q ss_pred cccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEE-EecCCCCeEEEEEe
Q 000251 540 AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS-LTGHTESTYVLDVH 618 (1784)
Q Consensus 540 ~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~-L~gH~~~VtsLafS 618 (1784)
.|...+.....+|+++...|+|++|++|..-|.+..||++.++++.. +.+-.+.|.+|..+
T Consensus 238 ------------------RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~h 299 (412)
T KOG3881|consen 238 ------------------RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCH 299 (412)
T ss_pred ------------------cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEc
Confidence 23334444567899999999999999999999999999999998877 89999999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEc
Q 000251 619 PFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFS 661 (1784)
Q Consensus 619 Pdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafS 661 (1784)
| ...+|+++|-|..|+|+|+.+.+++.... -...++.+.+.
T Consensus 300 p-~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~ 340 (412)
T KOG3881|consen 300 P-THPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLR 340 (412)
T ss_pred C-CCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEec
Confidence 9 77899999999999999999977665443 22344444443
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3e-10 Score=130.21 Aligned_cols=335 Identities=17% Similarity=0.192 Sum_probs=232.0
Q ss_pred cceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEE-CCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCEE
Q 000251 259 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS-METAYCLASCR-GHEGDITDLAVSSNNALVASASNDCII 336 (1784)
Q Consensus 259 ~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWD-l~Tgk~l~tL~-gH~~~VtsLafSpDg~lLASGS~DGtI 336 (1784)
+..+++.++||.+.|++...-|-..-+++.+.|.+|+||- ...|+.-..+. .-..+++++.+.++...|++|-..|++
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 4456778999999999999999888899999999999994 34444333332 235789999999999999999999999
Q ss_pred EEEECC----CCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCC
Q 000251 337 RVWRLP----DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 412 (1784)
Q Consensus 337 rVWDl~----tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~ 412 (1784)
.-+.+. ....++....|...|..+.|+-... .+++.+.|..+.---.+.+..+....+....
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e---~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~----------- 158 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE---WVLSTGKDKQFAWHCTESGNRLGGYNFETPA----------- 158 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce---eEEEeccccceEEEeeccCCcccceEeeccC-----------
Confidence 988664 3355666778999999999998765 8999999987665555555443333221110
Q ss_pred CCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCC
Q 000251 413 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 492 (1784)
Q Consensus 413 ~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s 492 (1784)
+++.|.-. +..+|...|.|.+..+.. .....+..+.+|.+.+.+++|.+..
T Consensus 159 ----------t~~~~d~~--~~fvGd~~gqvt~lr~~~-------~~~~~i~~~~~h~~~~~~l~Wd~~~---------- 209 (404)
T KOG1409|consen 159 ----------SALQFDAL--YAFVGDHSGQITMLKLEQ-------NGCQLITTFNGHTGEVTCLKWDPGQ---------- 209 (404)
T ss_pred ----------CCCceeeE--EEEecccccceEEEEEee-------cCCceEEEEcCcccceEEEEEcCCC----------
Confidence 01111111 445555666666655532 2245788899999999999999864
Q ss_pred CCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeE
Q 000251 493 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 572 (1784)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 572 (1784)
..|.+|..|..+.+||+-..+ +....+.+|...|..
T Consensus 210 ----------------~~LfSg~~d~~vi~wdigg~~----------------------------g~~~el~gh~~kV~~ 245 (404)
T KOG1409|consen 210 ----------------RLLFSGASDHSVIMWDIGGRK----------------------------GTAYELQGHNDKVQA 245 (404)
T ss_pred ----------------cEEEeccccCceEEEeccCCc----------------------------ceeeeeccchhhhhh
Confidence 689999999999999987422 233456678888888
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCceEE-----------------------------EEecC-----CCCeEEEEEe
Q 000251 573 IVWSLDNRFVLAAIMDCRICVWNAADGSLVH-----------------------------SLTGH-----TESTYVLDVH 618 (1784)
Q Consensus 573 VafSPDG~~LaSgs~DGsI~VWDl~tgklv~-----------------------------~L~gH-----~~~VtsLafS 618 (1784)
+..-+--+.+++++.||.|.+|+........ -+.-| ...|...+ +
T Consensus 246 l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c-~ 324 (404)
T KOG1409|consen 246 LSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKC-S 324 (404)
T ss_pred hhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCccc-c
Confidence 8888888899999999999999986532110 00001 11111111 1
Q ss_pred cCCCcEEEEEeCCCcEEE--------EeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000251 619 PFNPRIAMSAGYDGKTIV--------WDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 683 (1784)
Q Consensus 619 Pdd~~lLaSgs~DG~IrI--------WDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~s 683 (1784)
. ......+-+..-.+++ .|. +..++.++...+..|+.+.+..+-.+|++++.|..|+|||+..
T Consensus 325 s-~~~~~p~mg~e~~vR~~~~c~~~i~~~-~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 325 S-NRSSYPTMGFEFSVRVCDSCYPTIKDE-ERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred c-CccccccccceeEEEEecccchhhhcC-CCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 1 1111222222333443 444 3355677766677899999999999999999999999999864
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.6e-08 Score=119.82 Aligned_cols=363 Identities=12% Similarity=0.145 Sum_probs=222.7
Q ss_pred EEEEEECCCCeEEEEEecC---CCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCcc
Q 000251 293 LVKIWSMETAYCLASCRGH---EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV 369 (1784)
Q Consensus 293 tIkIWDl~Tgk~l~tL~gH---~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~ 369 (1784)
.+.+|+........+...+ ...+...+++++|+++|.+. +..|+|++..++..+.+... ..++++.|+|-+.
T Consensus 12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~-- 86 (566)
T KOG2315|consen 12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGN-- 86 (566)
T ss_pred eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc--ceeeeeeeccccc--
Confidence 4778876543333332223 44577888999998888765 56899999988864444432 2899999999886
Q ss_pred EEEEEE-----eCC-----CcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeC
Q 000251 370 YQLLSS-----SDD-----GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS 439 (1784)
Q Consensus 370 ~~LaSg-----s~D-----GtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~ 439 (1784)
+|.+- ..+ -.+.+|++.++.....+.. .... -++..|+.|..+.| --.
T Consensus 87 -yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~-------------------k~Q~-~W~~qfs~dEsl~a-rlv 144 (566)
T KOG2315|consen 87 -YLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQK-------------------KMQN-GWVPQFSIDESLAA-RLV 144 (566)
T ss_pred -ccccccccccccCCCCCCCceeeeeeccceehhheeh-------------------hhhc-Ccccccccchhhhh-hhh
Confidence 55441 222 3467999988544333321 0111 15788998876433 333
Q ss_pred CceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEE-----E
Q 000251 440 DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT-----C 514 (1784)
Q Consensus 440 DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVS-----g 514 (1784)
.+.+.+|++... ....-.-|...|+.+.++|... +..+++ +
T Consensus 145 ~nev~f~~~~~f----------~~~~~kl~~~~i~~f~lSpgp~------------------------~~~vAvyvPe~k 190 (566)
T KOG2315|consen 145 SNEVQFYDLGSF----------KTIQHKLSVSGITMLSLSPGPE------------------------PPFVAVYVPEKK 190 (566)
T ss_pred cceEEEEecCCc----------cceeeeeeccceeeEEecCCCC------------------------CceEEEEccCCC
Confidence 567999998541 1122334577888899988642 123333 3
Q ss_pred eCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE-Ee--c----
Q 000251 515 SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA-AI--M---- 587 (1784)
Q Consensus 515 S~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS-gs--~---- 587 (1784)
+.-+.++||...-...+.... .+.. ....-..+.|.+-|.-|++ ++ -
T Consensus 191 GaPa~vri~~~~~~~~~~~~a-------------------------~ksF-Fkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPVA-------------------------NKSF-FKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred CCCcEEEEeccccccccchhh-------------------------hccc-cccceeEEEeccCCceEEEEEEEeecCCC
Confidence 555678998665211110000 0001 1112234567776664332 22 2
Q ss_pred -----CCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEeCCCCceEEEEeccCcceEEEEEc
Q 000251 588 -----DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG-YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFS 661 (1784)
Q Consensus 588 -----DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs-~DG~IrIWDl~tG~~l~tl~~~~~~ItslafS 661 (1784)
..+++++++....++-.+. ..++|.++.|+|.+..+.++.| +=..+.|+|+ .+.++..+ +.++-.++-|+
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df--~egpRN~~~fn 320 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDF--PEGPRNTAFFN 320 (566)
T ss_pred ccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeC--CCCCccceEEC
Confidence 2358888887333333333 4789999999996666655544 5668999999 66766655 56677789999
Q ss_pred CCCCEEEEEeC---CCeEEEEECCCCccccccccceeecCCCcceEEccCCceeecccccccCcCCCCCcccCCCCCCCC
Q 000251 662 PDGASIILSDD---VGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYP 738 (1784)
Q Consensus 662 PDGk~LAsgs~---DG~I~IWdl~sGe~~~~~~~~~~fs~D~r~Lv~d~~g~vld~~tql~phl~~l~~~L~D~~~~p~p 738 (1784)
|.|++|+.++- .|.|-|||+.+-+.+....
T Consensus 321 p~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~----------------------------------------------- 353 (566)
T KOG2315|consen 321 PHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK----------------------------------------------- 353 (566)
T ss_pred CCCCEEEEeecCCCCCceEEEeccchhhccccc-----------------------------------------------
Confidence 99999997654 5899999987644332110
Q ss_pred CcchhhhhcccccccceEECCCCCeEEEee---CCCCCCceEeecCCCccccc-CCCccccceeeeCCCC
Q 000251 739 EPYQTMYQQRRLGALGIEWRPSSLKLAVGP---DFSLDQGYQLQPLADLDVMI-DPLPEFIDVMDWEPEN 804 (1784)
Q Consensus 739 ~~~Q~l~~~rr~~v~~iAfSPDG~~LAvg~---d~s~~~~v~lw~l~~~~~li-~plp~~i~~~~wsPDg 804 (1784)
-....-.+|||||.++.++. ..-.+..+.+|... +..+. ...+.-.-++.|.|-.
T Consensus 354 ----------a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~sEL~qv~W~P~~ 412 (566)
T KOG2315|consen 354 ----------AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKSELLQVEWRPFN 412 (566)
T ss_pred ----------cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhHhHhheeeeecC
Confidence 00122467999999999984 23347788999984 43332 2445324467888773
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-09 Score=134.67 Aligned_cols=234 Identities=17% Similarity=0.067 Sum_probs=149.9
Q ss_pred CEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeC---CCcEEEEecCCCcccceeecCCCCCcccCCCCC
Q 000251 334 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD---DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 410 (1784)
Q Consensus 334 GtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~---DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~ 410 (1784)
..|.+||. .|.....+..|...+.+.+|+||++ .|+..+. +..|.+||+.++.... +.
T Consensus 182 ~~l~~~d~-dg~~~~~lt~~~~~v~~p~wSpDG~---~lay~s~~~g~~~i~~~dl~~g~~~~-l~-------------- 242 (435)
T PRK05137 182 KRLAIMDQ-DGANVRYLTDGSSLVLTPRFSPNRQ---EITYMSYANGRPRVYLLDLETGQREL-VG-------------- 242 (435)
T ss_pred eEEEEECC-CCCCcEEEecCCCCeEeeEECCCCC---EEEEEEecCCCCEEEEEECCCCcEEE-ee--------------
Confidence 47889997 4555566777888999999999997 5665543 4689999998875321 10
Q ss_pred CCCCCCCCCCceEEEEECCCCCEEE-EeeCCce--EEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccc
Q 000251 411 PSSSAGPQSHQIFCCAFNANGTVFV-TGSSDTL--ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 487 (1784)
Q Consensus 411 ~~~s~~~h~~~V~sLafSpdG~~La-sGs~DG~--IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~ 487 (1784)
...+.+.+.+|+|||+.|+ +.+.++. |++||+.++ .+..+..+........|+|++
T Consensus 243 ------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~----------~~~~Lt~~~~~~~~~~~spDG----- 301 (435)
T PRK05137 243 ------NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG----------TTTRLTDSPAIDTSPSYSPDG----- 301 (435)
T ss_pred ------cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC----------ceEEccCCCCccCceeEcCCC-----
Confidence 1233456789999998776 4444554 777787543 233455566667788999987
Q ss_pred cccCCCCCCCCCccccccccCCeEEEEe-CCC--cEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceecc
Q 000251 488 SLADSSKEDSTPKFKNSWFCHDNIVTCS-RDG--SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 564 (1784)
Q Consensus 488 ~~~~s~~~~~~~~~~~~~~~~~~LVSgS-~DG--tIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~ 564 (1784)
..|+..+ .+| .|.+||+.++. ...+.
T Consensus 302 ---------------------~~i~f~s~~~g~~~Iy~~d~~g~~------------------------------~~~lt 330 (435)
T PRK05137 302 ---------------------SQIVFESDRSGSPQLYVMNADGSN------------------------------PRRIS 330 (435)
T ss_pred ---------------------CEEEEEECCCCCCeEEEEECCCCC------------------------------eEEee
Confidence 4555544 344 46666665321 12222
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecC---CeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCC-----CcEEE
Q 000251 565 PTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD-----GKTIV 636 (1784)
Q Consensus 565 ~h~~~VtsVafSPDG~~LaSgs~D---GsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~D-----G~IrI 636 (1784)
.....+....|||||++|+....+ ..|.+||+.++.. ..+.. ...+..+.|+|++..+++++... ..|.+
T Consensus 331 ~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~ 408 (435)
T PRK05137 331 FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYT 408 (435)
T ss_pred cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEE
Confidence 223445668899999999886643 3688999865543 34432 23467889999555555544433 25778
Q ss_pred EeCCCCceEEEEeccCcceEEEEEcC
Q 000251 637 WDIWEGIPIRIYEISRFRLVDGKFSP 662 (1784)
Q Consensus 637 WDl~tG~~l~tl~~~~~~ItslafSP 662 (1784)
+|+..+.. ..+. ..+.+...+|+|
T Consensus 409 ~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 409 VDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred EECCCCce-EEcc-CCCCccCcccCC
Confidence 88855544 4444 344566677776
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.3e-11 Score=141.06 Aligned_cols=229 Identities=14% Similarity=0.181 Sum_probs=183.9
Q ss_pred eEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEE
Q 000251 357 VTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 436 (1784)
Q Consensus 357 VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~Las 436 (1784)
-+.+.++.+|. +|+.|+.-|.|..+|+.++++...+.+ ...|..+.|..+.++||+
T Consensus 132 PY~~~ytrnGr---hlllgGrKGHlAa~Dw~t~~L~~Ei~v---------------------~Etv~Dv~~LHneq~~AV 187 (545)
T KOG1272|consen 132 PYHLDYTRNGR---HLLLGGRKGHLAAFDWVTKKLHFEINV---------------------METVRDVTFLHNEQFFAV 187 (545)
T ss_pred CeeeeecCCcc---EEEecCCccceeeeecccceeeeeeeh---------------------hhhhhhhhhhcchHHHHh
Confidence 45688888887 899999999999999999998877753 345788889888888887
Q ss_pred eeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeC
Q 000251 437 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR 516 (1784)
Q Consensus 437 Gs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~ 516 (1784)
+ ....++|||-. +.++..+..| ..|..+.|.|.- -+|++++.
T Consensus 188 A-QK~y~yvYD~~----------GtElHClk~~-~~v~rLeFLPyH--------------------------fLL~~~~~ 229 (545)
T KOG1272|consen 188 A-QKKYVYVYDNN----------GTELHCLKRH-IRVARLEFLPYH--------------------------FLLVAASE 229 (545)
T ss_pred h-hhceEEEecCC----------CcEEeehhhc-Cchhhhcccchh--------------------------heeeeccc
Confidence 7 46789999974 4456666654 467888888763 47888999
Q ss_pred CCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEEC
Q 000251 517 DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 596 (1784)
Q Consensus 517 DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl 596 (1784)
.|.+..-|+.+++.. ..+....+.+..++-.|-+..+-+|...|+|.+|..
T Consensus 230 ~G~L~Y~DVS~GklV-----------------------------a~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 230 AGFLKYQDVSTGKLV-----------------------------ASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP 280 (545)
T ss_pred CCceEEEeechhhhh-----------------------------HHHHccCCccchhhcCCccceEEEcCCCceEEecCC
Confidence 999999999975532 223334456677788888889999999999999999
Q ss_pred CCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeE
Q 000251 597 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQL 676 (1784)
Q Consensus 597 ~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I 676 (1784)
...+++..+..|.++|.+|++.+ +++++||+|.|..|+|||+..-..+.++.. ..+...++||.-|- ||+ +....|
T Consensus 281 ~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkgl-LA~-~~G~~v 356 (545)
T KOG1272|consen 281 NSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGL-LAL-SYGDHV 356 (545)
T ss_pred CCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeec-CCCccccccccccc-eee-ecCCee
Confidence 99999998999999999999999 889999999999999999998887777764 55777889998764 333 333578
Q ss_pred EEEE
Q 000251 677 YILN 680 (1784)
Q Consensus 677 ~IWd 680 (1784)
.||.
T Consensus 357 ~iw~ 360 (545)
T KOG1272|consen 357 QIWK 360 (545)
T ss_pred eeeh
Confidence 8886
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-08 Score=115.32 Aligned_cols=239 Identities=10% Similarity=0.158 Sum_probs=161.5
Q ss_pred EEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCC--eEEEEEcCCCCEEE-EEeCC------CEEEEEECCC
Q 000251 273 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD--ITDLAVSSNNALVA-SASND------CIIRVWRLPD 343 (1784)
Q Consensus 273 Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~--VtsLafSpDg~lLA-SGS~D------GtIrVWDl~t 343 (1784)
...++|+.|...++.|.++| .+||+.+--+...+...+.+. +.-|-| -.++|| +|+.+ ..|.|||=..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEeccc
Confidence 34599999999999998877 899998764443333323333 222223 233444 34333 5799999767
Q ss_pred CCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecC-CCcccceeecCCCCCcccCCCCCCCCCCCCCCCce
Q 000251 344 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR-YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 422 (1784)
Q Consensus 344 gk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~-tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V 422 (1784)
.+++..+. ...+|.+|.+.++ .|++.- .+.|.||... ..+.+..+... .....+
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~-----riVvvl-~~~I~VytF~~n~k~l~~~et~------------------~NPkGl 139 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD-----RIVVVL-ENKIYVYTFPDNPKLLHVIETR------------------SNPKGL 139 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC-----eEEEEe-cCeEEEEEcCCChhheeeeecc------------------cCCCce
Confidence 77887776 6789999999997 455444 5679999987 33433333211 111123
Q ss_pred EEEEECCCCCEEEE-eeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCcc
Q 000251 423 FCCAFNANGTVFVT-GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 501 (1784)
Q Consensus 423 ~sLafSpdG~~Las-Gs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~ 501 (1784)
.+++-..+..+||. |-.-|.|.|-|+..... .....+.+|...|.+++.+-.|
T Consensus 140 C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~-------~~p~~I~AH~s~Iacv~Ln~~G------------------- 193 (346)
T KOG2111|consen 140 CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP-------NAPSIINAHDSDIACVALNLQG------------------- 193 (346)
T ss_pred EeecCCCCceEEEcCCCccceEEEEEhhhcCc-------CCceEEEcccCceeEEEEcCCc-------------------
Confidence 33333334445554 34568999999965321 1346788999999999999876
Q ss_pred ccccccCCeEEEEeCCCc-EEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC
Q 000251 502 KNSWFCHDNIVTCSRDGS-AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 580 (1784)
Q Consensus 502 ~~~~~~~~~LVSgS~DGt-IrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 580 (1784)
..+||+|..|+ |+|||..++....... --.....|.+++|||+..
T Consensus 194 -------t~vATaStkGTLIRIFdt~~g~~l~E~R---------------------------RG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 194 -------TLVATASTKGTLIRIFDTEDGTLLQELR---------------------------RGVDRADIYCIAFSPNSS 239 (346)
T ss_pred -------cEEEEeccCcEEEEEEEcCCCcEeeeee---------------------------cCCchheEEEEEeCCCcc
Confidence 69999999998 7899999755322111 111335699999999999
Q ss_pred EEEEEecCCeEEEEECCCC
Q 000251 581 FVLAAIMDCRICVWNAADG 599 (1784)
Q Consensus 581 ~LaSgs~DGsI~VWDl~tg 599 (1784)
+|++++.-|+|+|+.+...
T Consensus 240 ~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEEcCCCeEEEEEeecC
Confidence 9999999999999998653
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.2e-09 Score=128.16 Aligned_cols=396 Identities=10% Similarity=0.044 Sum_probs=239.2
Q ss_pred ccccceEEEEEccCCCCEEEEEECCCC------------CEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcC-
Q 000251 256 MVQKMQNIKRVRGHRNAVYCAIFDRSG------------RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSS- 322 (1784)
Q Consensus 256 ~~~~~k~l~tL~GH~~~Vt~VaFSPDG------------~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSp- 322 (1784)
+..+.+.++.+.-|...|+.|.|.|-. -+||++...|.|.|||...+..+..+..|..+|.+++|-+
T Consensus 41 Ds~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~ 120 (1062)
T KOG1912|consen 41 DSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPA 120 (1062)
T ss_pred ehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeec
Confidence 345678889999999999999998732 2577888899999999999999999999999999999976
Q ss_pred --CC-CEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCc----cccee
Q 000251 323 --NN-ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ----FSPRI 395 (1784)
Q Consensus 323 --Dg-~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~----~l~~i 395 (1784)
+. .+|++-....+|.+|+..+|..+...........|+.+.|-... .|..-+..|.|.+-+.-... ..+.+
T Consensus 121 rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r--h~~~l~s~g~vl~~~~l~~sep~~pgk~~ 198 (1062)
T KOG1912|consen 121 RDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR--HFCVLGSKGFVLSCKDLGLSEPDVPGKEF 198 (1062)
T ss_pred cCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc--eEEEEccCceEEEEeccCCCCCCCCceeE
Confidence 33 36666667789999999999998887766777888999987642 55556666777666543211 11222
Q ss_pred ecCCCCCccc-----CCCCCCCCCCCCCCC---ceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeec
Q 000251 396 YIPRPSDAVA-----GRNMAPSSSAGPQSH---QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS 467 (1784)
Q Consensus 396 ~l~~~~~~~~-----g~~~~~~~s~~~h~~---~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~ 467 (1784)
.+..+..... ............... ....++|+|.-+.++.......+.|+|+.- ...+....
T Consensus 199 qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~---------~~~l~vvp 269 (1062)
T KOG1912|consen 199 QITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY---------ECCLAVVP 269 (1062)
T ss_pred EEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh---------hceeEEEE
Confidence 2221110000 000000000000000 122467788765555555667799999853 22333333
Q ss_pred CCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCC------------------------------
Q 000251 468 GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD------------------------------ 517 (1784)
Q Consensus 468 gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~D------------------------------ 517 (1784)
-..+.+.-+.+-|++. .+.|+++-.|
T Consensus 270 ier~~akfv~vlP~~~------------------------rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~ 325 (1062)
T KOG1912|consen 270 IERGGAKFVDVLPDPR------------------------RDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQV 325 (1062)
T ss_pred eccCCcceeEeccCCC------------------------cceEEEEecCCeEEEEEeeccCccccccchhhccccccce
Confidence 3444455555555531 1334444444
Q ss_pred ------------------------------CcEEEEeCCCCCCCccccccccccc--ccCCCCCCCCCCCCCCCceeccC
Q 000251 518 ------------------------------GSAIIWIPRSRRSHPKAARWTQAYH--LKVPPPPMPPQPPRGGPRQRILP 565 (1784)
Q Consensus 518 ------------------------------GtIrIWDl~t~~~~~~~~~w~~~~~--l~~~~~~~~~~~~~~~~~~~l~~ 565 (1784)
|.+.+|.+.+++.+.....-...+. +.+...+.......-..+...-.
T Consensus 326 ~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~ 405 (1062)
T KOG1912|consen 326 HVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGS 405 (1062)
T ss_pred EEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCC
Confidence 4444454443332211000000000 00000000000000000001113
Q ss_pred CCCCeeEEEEcC-----------CC-------CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEE
Q 000251 566 TPRGVNMIVWSL-----------DN-------RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS 627 (1784)
Q Consensus 566 h~~~VtsVafSP-----------DG-------~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaS 627 (1784)
|..+.++....| .| .++|.|+..|+|.|+|+.++.....+.-|...|.++.|-- ..-|++
T Consensus 406 h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g--~sslvS 483 (1062)
T KOG1912|consen 406 HSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG--NSSLVS 483 (1062)
T ss_pred CCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc--ceeEEE
Confidence 344444433322 22 2678899999999999999999999999999999999964 333444
Q ss_pred Ee----------CCCcEEEEeCCCCceEE--EEe-ccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 000251 628 AG----------YDGKTIVWDIWEGIPIR--IYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688 (1784)
Q Consensus 628 gs----------~DG~IrIWDl~tG~~l~--tl~-~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~~~ 688 (1784)
.+ .-+.+.|-|+.+|.-.. .++ ....+|..+..|.-|+||+..-.+--+-+||+.+-.++.
T Consensus 484 fsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr 557 (1062)
T KOG1912|consen 484 FSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLR 557 (1062)
T ss_pred eeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHH
Confidence 33 23457788999985433 223 234589999999999999999999999999997765543
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.4e-09 Score=132.42 Aligned_cols=150 Identities=25% Similarity=0.399 Sum_probs=125.6
Q ss_pred EEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeE-EecCCC
Q 000251 276 AIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS-VLRGHT 354 (1784)
Q Consensus 276 VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~-~L~gH~ 354 (1784)
+.++++.-++++|+.-+.|.+|+..--..-..+.||.+.|.++.|+-||+++++.|.|.+|++|++.+++... +..+|+
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence 3357777799999999999999987333333588999999999999999999999999999999999998776 778999
Q ss_pred CceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEE
Q 000251 355 AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVF 434 (1784)
Q Consensus 355 ~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~L 434 (1784)
..|+.++|.|+ .+++++.|.++++|+....++. .+ .......++.++..++...+
T Consensus 219 aRvw~~~~~~n-----~i~t~gedctcrvW~~~~~~l~-~y-------------------~~h~g~~iw~~~~~~~~~~~ 273 (967)
T KOG0974|consen 219 ARVWACCFLPN-----RIITVGEDCTCRVWGVNGTQLE-VY-------------------DEHSGKGIWKIAVPIGVIIK 273 (967)
T ss_pred ceeEEEEeccc-----eeEEeccceEEEEEecccceeh-hh-------------------hhhhhcceeEEEEcCCceEE
Confidence 99999999996 6999999999999976544322 11 11234568999999999999
Q ss_pred EEeeCCceEEEEcCCC
Q 000251 435 VTGSSDTLARVWNACK 450 (1784)
Q Consensus 435 asGs~DG~IrVWDl~t 450 (1784)
++++.|+.+++|++..
T Consensus 274 vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 274 VTGGNDSTLKLWDLNG 289 (967)
T ss_pred EeeccCcchhhhhhhc
Confidence 9999999999999854
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.6e-09 Score=128.80 Aligned_cols=234 Identities=16% Similarity=0.055 Sum_probs=147.6
Q ss_pred CcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---CEEEEEECCCCCeeEEecCCCCceEEEEecCCCC
Q 000251 291 DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG 367 (1784)
Q Consensus 291 DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~D---GtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~ 367 (1784)
...|.++|...+ ....+..+...+.+.+|+|||++||.++.+ ..|++||+.+++... +..+.+.+.+++|+|+++
T Consensus 169 ~~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 169 RYELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS 246 (417)
T ss_pred cceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 346888887543 345566677789999999999999987654 489999999886543 334556777899999987
Q ss_pred ccEEEEEEeCCC--cEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeC-Cc--e
Q 000251 368 SVYQLLSSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DT--L 442 (1784)
Q Consensus 368 ~~~~LaSgs~DG--tIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~-DG--~ 442 (1784)
.++++.+.++ .|.+||+.++...... .+........|+|+|+.|+..+. .+ .
T Consensus 247 --~l~~~~~~~~~~~i~~~d~~~~~~~~l~---------------------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~ 303 (417)
T TIGR02800 247 --KLAVSLSKDGNPDIYVMDLDGKQLTRLT---------------------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQ 303 (417)
T ss_pred --EEEEEECCCCCccEEEEECCCCCEEECC---------------------CCCCCCCCEEECCCCCEEEEEECCCCCce
Confidence 2334455444 5888888776432111 01122345689999998876654 33 5
Q ss_pred EEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCC---c
Q 000251 443 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG---S 519 (1784)
Q Consensus 443 IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DG---t 519 (1784)
|+++++.++ ....+..+...+..+.|+|++ ..|+.++.++ .
T Consensus 304 iy~~d~~~~----------~~~~l~~~~~~~~~~~~spdg--------------------------~~i~~~~~~~~~~~ 347 (417)
T TIGR02800 304 IYMMDADGG----------EVRRLTFRGGYNASPSWSPDG--------------------------DLIAFVHREGGGFN 347 (417)
T ss_pred EEEEECCCC----------CEEEeecCCCCccCeEECCCC--------------------------CEEEEEEccCCceE
Confidence 777777532 123334445566778899886 5676666654 6
Q ss_pred EEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCC---eEEEEEC
Q 000251 520 AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNA 596 (1784)
Q Consensus 520 IrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DG---sI~VWDl 596 (1784)
|.+||+.++.. ..+. ........+|+|||++|+.++.++ .+++.+.
T Consensus 348 i~~~d~~~~~~------------------------------~~l~-~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 348 IAVMDLDGGGE------------------------------RVLT-DTGLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred EEEEeCCCCCe------------------------------EEcc-CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 78888764220 0000 011123457999999998877654 3555553
Q ss_pred CCCceEEEEecCCCCeEEEEE
Q 000251 597 ADGSLVHSLTGHTESTYVLDV 617 (1784)
Q Consensus 597 ~tgklv~~L~gH~~~VtsLaf 617 (1784)
+|.....+..+.+.+..++|
T Consensus 397 -~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 397 -DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred -CCceeeECCCCCCCcCCCCC
Confidence 45555556544445554444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-08 Score=122.73 Aligned_cols=417 Identities=12% Similarity=0.131 Sum_probs=256.1
Q ss_pred CCEEEEEECCCCCEEEEEcCCcEEEEEECCCCe---------------EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCE
Q 000251 271 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY---------------CLASCRGHEGDITDLAVSSNNALVASASNDCI 335 (1784)
Q Consensus 271 ~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk---------------~l~tL~gH~~~VtsLafSpDg~lLASGS~DGt 335 (1784)
....|++|+....++|.|+.||.++|..+.+.. .-+++.||.+.|.-+.|+.+.+.|-+...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 457899999999999999999999999875421 22467899999999999999999999999999
Q ss_pred EEEEECCCCCeeEEe--cCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCC
Q 000251 336 IRVWRLPDGLPISVL--RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 413 (1784)
Q Consensus 336 IrVWDl~tgk~i~~L--~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~ 413 (1784)
|.||-+-.|.-...+ ....+.|.+++|..+|. .+.....||.|.+=.++..+.-..-
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~---kIcIvYeDGavIVGsvdGNRIwgKe------------------ 153 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT---KICIVYEDGAVIVGSVDGNRIWGKE------------------ 153 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc---EEEEEEccCCEEEEeeccceecchh------------------
Confidence 999998777543322 22456789999999997 8888889998887666544321100
Q ss_pred CCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCc---ceeeecCCCCCceEEEEccCccccccccc
Q 000251 414 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH---EIDVLSGHENDVNYVQFSGCAVASRFSLA 490 (1784)
Q Consensus 414 s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~---~i~~l~gH~~~V~sLafSpdglas~~~~~ 490 (1784)
-.......+.|++|...++.+-.+|.+.+||....-. ....... ....+......|..+.|.....
T Consensus 154 ---Lkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~-~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~------- 222 (1189)
T KOG2041|consen 154 ---LKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFE-RKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY------- 222 (1189)
T ss_pred ---cchheccceeecccHHHHHhhhcCCcEEEecccccHH-HhhhhceEEeeeeeecCCCccccceeeccCcc-------
Confidence 0122345788999999999999999999999842100 0000000 0011111222344555543210
Q ss_pred CCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCe
Q 000251 491 DSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGV 570 (1784)
Q Consensus 491 ~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~V 570 (1784)
...-.....|+.+-..|.+.|..-.+ .+...+....-.|
T Consensus 223 -----------~~v~pdrP~lavcy~nGr~QiMR~eN------------------------------D~~Pvv~dtgm~~ 261 (1189)
T KOG2041|consen 223 -----------QPVPPDRPRLAVCYANGRMQIMRSEN------------------------------DPEPVVVDTGMKI 261 (1189)
T ss_pred -----------ccCCCCCCEEEEEEcCceehhhhhcC------------------------------CCCCeEEecccEe
Confidence 00111235789999999888753321 1111223344568
Q ss_pred eEEEEcCCCCEEEEEecCC---------eEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000251 571 NMIVWSLDNRFVLAAIMDC---------RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 641 (1784)
Q Consensus 571 tsVafSPDG~~LaSgs~DG---------sI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~t 641 (1784)
..+.|+++|..|++++.+. .|++|. .-|+.+.+++.....|++++|-. .+.-++. ..|+.|.+=++..
T Consensus 262 vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg-~gLriA~-AvdsfiyfanIRP 338 (1189)
T KOG2041|consen 262 VGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEG-TGLRIAI-AVDSFIYFANIRP 338 (1189)
T ss_pred ecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcC-CceEEEE-EecceEEEEeecc
Confidence 8899999999999987542 466655 35888899998888999999976 3433333 3588888877643
Q ss_pred CceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc-cccc--cceeecCCCcceEEccCCceeeccccc
Q 000251 642 GIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ-KDAK--YDQFFLGDYRPLVQDTYGNVLDQETQL 718 (1784)
Q Consensus 642 G~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~~-~~~~--~~~~fs~D~r~Lv~d~~g~vld~~tql 718 (1784)
.-.-..+. ..|.-+---++ .-...|.+||+.+.+.. +... ....|..+.-.|+.....+++-+...+
T Consensus 339 ~ykWgy~e---~TvVy~y~~~e-------~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~l 408 (1189)
T KOG2041|consen 339 EYKWGYIE---ETVVYVYQKEE-------LPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTL 408 (1189)
T ss_pred cceEEEee---eEEEEEEccCC-------CcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhhh
Confidence 21111111 01110000011 11246888999887653 2222 223555565556554444444333333
Q ss_pred ccCcCCCCCcccCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeecCCCcc
Q 000251 719 APHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLD 785 (1784)
Q Consensus 719 ~phl~~l~~~L~D~~~~p~p~~~Q~l~~~rr~~v~~iAfSPDG~~LAvg~d~s~~~~v~lw~l~~~~ 785 (1784)
-...+...-.||..-|.+....+..+.|.- ..-.|..++++ ....+.+|....++
T Consensus 409 e~~~~~~~l~LCNSIGT~lD~kytdirP~F--------v~vn~~~vviA----S~e~~~iWhy~~pK 463 (1189)
T KOG2041|consen 409 ENRSRVYFLQLCNSIGTSLDYKYTDIRPKF--------VCVNGICVVIA----SEERYFIWHYVLPK 463 (1189)
T ss_pred hcccceEEEeeecccCCcCCCCcceeeeeE--------EEecceEEEEe----ccccEEEEEEeccc
Confidence 333333344577777777666666554432 23355666666 44566777664443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.5e-08 Score=121.35 Aligned_cols=311 Identities=12% Similarity=0.060 Sum_probs=188.4
Q ss_pred CCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEE
Q 000251 282 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 361 (1784)
Q Consensus 282 G~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLa 361 (1784)
+.+|++++.+|.|.-+|..+|+.+............++. ++..++.++.+|.|..+|..+|+.+...... +.+.+..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCC
Confidence 568888888999999999999988776543322223333 4678888889999999999999987765432 2222211
Q ss_pred ecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCc
Q 000251 362 FSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDT 441 (1784)
Q Consensus 362 fSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG 441 (1784)
...+ . .++.++.+|.|..||..+|+.+.......+... ..... +..+. + ..++++..+|
T Consensus 142 ~v~~-~---~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~-----------~~~~~----sp~~~-~-~~v~~~~~~g 200 (377)
T TIGR03300 142 LVAN-G---LVVVRTNDGRLTALDAATGERLWTYSRVTPALT-----------LRGSA----SPVIA-D-GGVLVGFAGG 200 (377)
T ss_pred EEEC-C---EEEEECCCCeEEEEEcCCCceeeEEccCCCcee-----------ecCCC----CCEEE-C-CEEEEECCCC
Confidence 1112 2 677788899999999999987665532111000 00000 11111 2 3677788889
Q ss_pred eEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEE
Q 000251 442 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 521 (1784)
Q Consensus 442 ~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIr 521 (1784)
.+..+|..+++..-... +....+.. .+..+.. ........++.+++++.+|.+.
T Consensus 201 ~v~ald~~tG~~~W~~~----~~~~~g~~-~~~~~~~---------------------~~~~p~~~~~~vy~~~~~g~l~ 254 (377)
T TIGR03300 201 KLVALDLQTGQPLWEQR----VALPKGRT-ELERLVD---------------------VDGDPVVDGGQVYAVSYQGRVA 254 (377)
T ss_pred EEEEEEccCCCEeeeec----cccCCCCC-chhhhhc---------------------cCCccEEECCEEEEEEcCCEEE
Confidence 99999987653211000 00000000 0000000 0000111245788888999999
Q ss_pred EEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCce
Q 000251 522 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL 601 (1784)
Q Consensus 522 IWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgkl 601 (1784)
.||+.+++. .|.... ...... ..++..|++++.+|.|+.+|..+|+.
T Consensus 255 a~d~~tG~~-----~W~~~~--------------------------~~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 255 ALDLRSGRV-----LWKRDA--------------------------SSYQGP--AVDDNRLYVTDADGVVVALDRRSGSE 301 (377)
T ss_pred EEECCCCcE-----EEeecc--------------------------CCccCc--eEeCCEEEEECCCCeEEEEECCCCcE
Confidence 999987542 232110 000111 12466788888999999999999998
Q ss_pred EEEEecCCC-CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q 000251 602 VHSLTGHTE-STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYIL 679 (1784)
Q Consensus 602 v~~L~gH~~-~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IW 679 (1784)
+........ .+..... .+..|++++.+|.|.+||..+|+.+..+..+...+..--...++ .|++++.||.|+.|
T Consensus 302 ~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 302 LWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EEccccccCCccccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 876532221 2222222 23466678899999999999999999988665444332222333 58888889999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.3e-09 Score=119.42 Aligned_cols=118 Identities=19% Similarity=0.364 Sum_probs=93.1
Q ss_pred CCCeeEEEEcCCCCEEEEE--ecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeC---CCcEEEEeCCC
Q 000251 567 PRGVNMIVWSLDNRFVLAA--IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY---DGKTIVWDIWE 641 (1784)
Q Consensus 567 ~~~VtsVafSPDG~~LaSg--s~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~---DG~IrIWDl~t 641 (1784)
...|..++|+|+|+.||+. ..++.|.|||+. ++.+..+. ...+..|.|+| ++++|++||. .|.|.+||+.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 4469999999999987654 467899999996 77777764 45678999999 6667777764 46799999999
Q ss_pred CceEEEEeccCcceEEEEEcCCCCEEEEEeC------CCeEEEEECCCCccccccc
Q 000251 642 GIPIRIYEISRFRLVDGKFSPDGASIILSDD------VGQLYILNTGQGESQKDAK 691 (1784)
Q Consensus 642 G~~l~tl~~~~~~ItslafSPDGk~LAsgs~------DG~I~IWdl~sGe~~~~~~ 691 (1784)
.+.+..+. +..++.++|||||++|+++.. |..+.||+. +|+.+....
T Consensus 135 ~~~i~~~~--~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~~ 187 (194)
T PF08662_consen 135 KKKISTFE--HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKKP 187 (194)
T ss_pred CEEeeccc--cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEecc
Confidence 88888775 345789999999999998753 789999998 466554433
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-07 Score=115.33 Aligned_cols=277 Identities=12% Similarity=0.083 Sum_probs=168.4
Q ss_pred CEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEe---------CCCcEEEEecCCCcccceeecCCCCCcc
Q 000251 334 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS---------DDGTCRIWDARYSQFSPRIYIPRPSDAV 404 (1784)
Q Consensus 334 GtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs---------~DGtIrIWDl~tg~~l~~i~l~~~~~~~ 404 (1784)
++|.|.|..+++.+..+.....+- .+ ++||++. ..++.+ .+..|.+||+.+.+.+..+.++..+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~--lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSF--FAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCE--EEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 799999999999988886443333 24 9999872 334444 5789999999999988887653221110
Q ss_pred cCCCCCCCCCCCCCCCceEEEEECCCCCEEEEee-C-CceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCc
Q 000251 405 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-S-DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 482 (1784)
Q Consensus 405 ~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs-~-DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg 482 (1784)
.......++++|||++|++.. . +..|.|+|+.+.+ .+..+.- .+...-+..+.
T Consensus 103 -------------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k---------vv~ei~v-p~~~~vy~t~e-- 157 (352)
T TIGR02658 103 -------------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA---------FVRMMDV-PDCYHIFPTAN-- 157 (352)
T ss_pred -------------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc---------EEEEEeC-CCCcEEEEecC--
Confidence 122345789999999998766 4 7899999997643 2322221 11111111111
Q ss_pred ccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCcee
Q 000251 483 VASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 562 (1784)
Q Consensus 483 las~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~ 562 (1784)
..+.+-+.||......+.+.... . .... +.. .. ....
T Consensus 158 --------------------------~~~~~~~~Dg~~~~v~~d~~g~~---~--~~~~-------~vf----~~-~~~~ 194 (352)
T TIGR02658 158 --------------------------DTFFMHCRDGSLAKVGYGTKGNP---K--IKPT-------EVF----HP-EDEY 194 (352)
T ss_pred --------------------------CccEEEeecCceEEEEecCCCce---E--Eeee-------eee----cC-Cccc
Confidence 12223334444443322211100 0 0000 000 00 0000
Q ss_pred ccCCCCCeeEEEEcC-CCCEEEEEecCCeEEEEECCC-----CceEEEEec-------CCCCeEEEEEecCCCcEEEEE-
Q 000251 563 ILPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAAD-----GSLVHSLTG-------HTESTYVLDVHPFNPRIAMSA- 628 (1784)
Q Consensus 563 l~~h~~~VtsVafSP-DG~~LaSgs~DGsI~VWDl~t-----gklv~~L~g-------H~~~VtsLafSPdd~~lLaSg- 628 (1784)
+. ..+ .|++ +|+++.+... |.|.+.|+.. .+.+..+.. ..+.+.-++++|+++++++..
T Consensus 195 v~--~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~ 267 (352)
T TIGR02658 195 LI--NHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD 267 (352)
T ss_pred cc--cCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence 00 111 3455 8888877766 9999999643 333333321 233445699999777666633
Q ss_pred e--------CCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCC-EEEEEe-CCCeEEEEECCCCcccccc
Q 000251 629 G--------YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGA-SIILSD-DVGQLYILNTGQGESQKDA 690 (1784)
Q Consensus 629 s--------~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk-~LAsgs-~DG~I~IWdl~sGe~~~~~ 690 (1784)
+ ..+.|.++|..+++.+..+..+ ..+..++|+|||+ +|.+.. .++.|.|+|+.+++.++..
T Consensus 268 ~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 268 QRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 1 1257999999999999999854 4788999999999 777665 5788999999999887654
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.4e-09 Score=120.98 Aligned_cols=271 Identities=11% Similarity=0.085 Sum_probs=190.0
Q ss_pred CCCEEEEEECCCCC--EEEEEcCCcEEEEEECCCCeEEEE------EecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEC
Q 000251 270 RNAVYCAIFDRSGR--YVITGSDDRLVKIWSMETAYCLAS------CRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 341 (1784)
Q Consensus 270 ~~~Vt~VaFSPDG~--~LATGS~DGtIkIWDl~Tgk~l~t------L~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl 341 (1784)
...|..++|--+++ .|...+.+..+....+....+... .....+.|..++.. |+ .|++|-.+|.+.+|.+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEec
Confidence 35567777765553 455555666777777766655443 33456777777765 34 6777788999999998
Q ss_pred CCCC----eeEEecCCCCceEEEEecCCCCccEEEEEEeCC--CcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCC
Q 000251 342 PDGL----PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD--GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 415 (1784)
Q Consensus 342 ~tgk----~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~D--GtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~ 415 (1784)
..+. ++..+..+ ..+..|.-++... +.+++|+.. ..+.+||+...+.+..- ... ......
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p--~Iva~GGke~~n~lkiwdle~~~qiw~a--KNv---------pnD~L~ 198 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDP--YIVATGGKENINELKIWDLEQSKQIWSA--KNV---------PNDRLG 198 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCC--ceEecCchhcccceeeeecccceeeeec--cCC---------CCcccc
Confidence 7542 33344433 4566666666554 367779988 88999999987433221 111 111111
Q ss_pred CCCCCceEEEEECCC--CCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCC
Q 000251 416 GPQSHQIFCCAFNAN--GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 493 (1784)
Q Consensus 416 ~~h~~~V~sLafSpd--G~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~ 493 (1784)
..-.-.++.+.|.+. ...||+++.-+.+++||.+.+ .+++..+..-..+|+++...|.+
T Consensus 199 LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q--------RRPV~~fd~~E~~is~~~l~p~g----------- 259 (412)
T KOG3881|consen 199 LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ--------RRPVAQFDFLENPISSTGLTPSG----------- 259 (412)
T ss_pred ceeeeeeccceecCCCCCceEEEEecceeEEEecCccc--------CcceeEeccccCcceeeeecCCC-----------
Confidence 123345778999887 789999999999999999753 45677777778899999988886
Q ss_pred CCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEE
Q 000251 494 KEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMI 573 (1784)
Q Consensus 494 ~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsV 573 (1784)
+.|++|..-|.+..||+++++..+ ..+.+-.+.|++|
T Consensus 260 ---------------n~Iy~gn~~g~l~~FD~r~~kl~g----------------------------~~~kg~tGsirsi 296 (412)
T KOG3881|consen 260 ---------------NFIYTGNTKGQLAKFDLRGGKLLG----------------------------CGLKGITGSIRSI 296 (412)
T ss_pred ---------------cEEEEecccchhheecccCceeec----------------------------cccCCccCCcceE
Confidence 789999999999999999754221 1234556789999
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEec
Q 000251 574 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 619 (1784)
Q Consensus 574 afSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSP 619 (1784)
..+|.+++|++++-|..|+|+|+.+.++++...- ...+++|.+.+
T Consensus 297 h~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~ 341 (412)
T KOG3881|consen 297 HCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRD 341 (412)
T ss_pred EEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecC
Confidence 9999999999999999999999999777664431 22345665544
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.6e-09 Score=117.52 Aligned_cols=148 Identities=19% Similarity=0.281 Sum_probs=107.2
Q ss_pred EEEEECCCCCEEEEEcC----------CcEEEEEECC-CCeEEEEEec-CCCCeEEEEEcCCCCEEEEE--eCCCEEEEE
Q 000251 274 YCAIFDRSGRYVITGSD----------DRLVKIWSME-TAYCLASCRG-HEGDITDLAVSSNNALVASA--SNDCIIRVW 339 (1784)
Q Consensus 274 t~VaFSPDG~~LATGS~----------DGtIkIWDl~-Tgk~l~tL~g-H~~~VtsLafSpDg~lLASG--S~DGtIrVW 339 (1784)
..+.|+++|++|+.-.. -|...||-+. .+..+..+.- ..++|.+++|+|+|+.+|+. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35679999988765432 2345555552 2334444443 34579999999999987554 456799999
Q ss_pred ECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeC---CCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCC
Q 000251 340 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD---DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 416 (1784)
Q Consensus 340 Dl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~---DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~ 416 (1784)
|+. ++.+..+. ...+..|.|+|+|+ +|++++. .|.|.+||+++.+.+...
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~---~l~~~g~~n~~G~l~~wd~~~~~~i~~~--------------------- 141 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGR---FLVLAGFGNLNGDLEFWDVRKKKKISTF--------------------- 141 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCC---EEEEEEccCCCcEEEEEECCCCEEeecc---------------------
Confidence 996 77776664 56788999999998 7777764 467999999966654333
Q ss_pred CCCCceEEEEECCCCCEEEEeeC------CceEEEEcCC
Q 000251 417 PQSHQIFCCAFNANGTVFVTGSS------DTLARVWNAC 449 (1784)
Q Consensus 417 ~h~~~V~sLafSpdG~~LasGs~------DG~IrVWDl~ 449 (1784)
....++.++|+|+|++|+++.. |..++||+..
T Consensus 142 -~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 142 -EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred -ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 2234789999999999999874 6788999984
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-08 Score=120.68 Aligned_cols=351 Identities=13% Similarity=0.213 Sum_probs=205.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeC-----------CCcEEE
Q 000251 315 ITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD-----------DGTCRI 383 (1784)
Q Consensus 315 VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~-----------DGtIrI 383 (1784)
-+-+.|||-|+||+|--..| |.+|--.+-..++.+. | ..|.-+.|||..+ ||++-+. ...|+|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~Ek---YLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEK---YLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccc---eEEEecCCccccCcccCCCceEEE
Confidence 46788999999999988766 8899766655566554 5 4488899999987 8888653 256899
Q ss_pred EecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcce
Q 000251 384 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 463 (1784)
Q Consensus 384 WDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i 463 (1784)
||+.+|.....+..... ....-.-+.||.|++++|.-..+ .|.||+..+. ..+
T Consensus 287 WDI~tG~lkrsF~~~~~-----------------~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf---------~ll 339 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKS-----------------PYLKWPIFRWSHDDKYFARMTGN-SISIYETPSF---------MLL 339 (698)
T ss_pred EEccccchhcceeccCC-----------------CccccceEEeccCCceeEEeccc-eEEEEecCce---------eee
Confidence 99999998777643211 11112246799999999987764 5889987431 111
Q ss_pred eeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccc
Q 000251 464 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 543 (1784)
Q Consensus 464 ~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l 543 (1784)
..-.-.-..|....|+|.+ ..| ..|-..+.......
T Consensus 340 d~Kslki~gIr~FswsP~~--------------------------~ll---------AYwtpe~~~~parv--------- 375 (698)
T KOG2314|consen 340 DKKSLKISGIRDFSWSPTS--------------------------NLL---------AYWTPETNNIPARV--------- 375 (698)
T ss_pred cccccCCccccCcccCCCc--------------------------ceE---------EEEcccccCCcceE---------
Confidence 1112233456777788764 122 23332221100000
Q ss_pred cCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEec----------CCeEEEEECCCCceEEEEecCCCCeE
Q 000251 544 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM----------DCRICVWNAADGSLVHSLTGHTESTY 613 (1784)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~----------DGsI~VWDl~tgklv~~L~gH~~~Vt 613 (1784)
...+.+....+....-+.-.=..+-|-.+|.+|+.-.+ -..+-|+.+.....--..-.-...|.
T Consensus 376 ------tL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi 449 (698)
T KOG2314|consen 376 ------TLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVI 449 (698)
T ss_pred ------EEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhee
Confidence 00000111111111112222234567778888775321 11244555544332111122356788
Q ss_pred EEEEecCCCcEEEEEeCC--CcEEEEeCCC-C---ceEEEEeccCcceEEEEEcCCCCEEEEE---eCCCeEEEEECCCC
Q 000251 614 VLDVHPFNPRIAMSAGYD--GKTIVWDIWE-G---IPIRIYEISRFRLVDGKFSPDGASIILS---DDVGQLYILNTGQG 684 (1784)
Q Consensus 614 sLafSPdd~~lLaSgs~D--G~IrIWDl~t-G---~~l~tl~~~~~~ItslafSPDGk~LAsg---s~DG~I~IWdl~sG 684 (1784)
..+|-|.+.++.+..+.+ .++.+|-+.+ + .++..+. ......+.|+|.|++++++ +..|.+.++|+.-.
T Consensus 450 ~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a 527 (698)
T KOG2314|consen 450 AFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA 527 (698)
T ss_pred eeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchh
Confidence 999999888777666554 4688888873 2 3444443 2345678999999999876 55788888886421
Q ss_pred ccccccccceeecCCCcceEEccCCceeecccccccCcCCCCCcccCCCCCCCCCcchhhhhcccccccceEECCCCCeE
Q 000251 685 ESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKL 764 (1784)
Q Consensus 685 e~~~~~~~~~~fs~D~r~Lv~d~~g~vld~~tql~phl~~l~~~L~D~~~~p~p~~~Q~l~~~rr~~v~~iAfSPDG~~L 764 (1784)
++. .+..+.| ..+..+.|.|.|+|+
T Consensus 528 --------------~~k-------------~~~~~eh----------------------------~~at~veWDPtGRYv 552 (698)
T KOG2314|consen 528 --------------DLK-------------DTASPEH----------------------------FAATEVEWDPTGRYV 552 (698)
T ss_pred --------------hhh-------------hccCccc----------------------------cccccceECCCCCEE
Confidence 000 0111111 124468899999999
Q ss_pred EEee---CCCCCCceEeecCCCcccccCCCccccceeeeCCCCCc
Q 000251 765 AVGP---DFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEV 806 (1784)
Q Consensus 765 Avg~---d~s~~~~v~lw~l~~~~~li~plp~~i~~~~wsPDg~~ 806 (1784)
.++. ....+..+++|..... .+-+-.-+...+..|.|--..
T Consensus 553 vT~ss~wrhk~d~GYri~tfqGr-ll~~~~i~~f~qF~WRPRPps 596 (698)
T KOG2314|consen 553 VTSSSSWRHKVDNGYRIFTFQGR-LLKEDIIDRFKQFLWRPRPPS 596 (698)
T ss_pred EEeeehhhhccccceEEEEeecH-HHHHHHHHHHHhhccCCCCCc
Confidence 9985 3345788999998533 232222233445678877433
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-08 Score=120.46 Aligned_cols=316 Identities=11% Similarity=0.124 Sum_probs=191.9
Q ss_pred CEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC-----------CCEEEEEE
Q 000251 272 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN-----------DCIIRVWR 340 (1784)
Q Consensus 272 ~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~-----------DGtIrVWD 340 (1784)
.-+-+.|||-|.||+|--.-| |.+|--.+...++.+. |. .|.-+.|||+.+||+|-+. ...++|||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 346788999999999987766 8999877766666654 43 5899999999999998753 25799999
Q ss_pred CCCCCeeEEecC--CCCceE-EEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCC
Q 000251 341 LPDGLPISVLRG--HTAAVT-AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 417 (1784)
Q Consensus 341 l~tgk~i~~L~g--H~~~Vt-sLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~ 417 (1784)
+.+|...+.+.. ....++ -..||.|++ ++|.-..+ .|.||+...-.++.... -
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdK---y~Arm~~~-sisIyEtpsf~lld~Ks--------------------l 344 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDK---YFARMTGN-SISIYETPSFMLLDKKS--------------------L 344 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCc---eeEEeccc-eEEEEecCceeeecccc--------------------c
Confidence 999998888765 223333 357999987 77766664 58899876533221111 1
Q ss_pred CCCceEEEEECCCCCEEEEeeCC-----ceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCC
Q 000251 418 QSHQIFCCAFNANGTVFVTGSSD-----TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 492 (1784)
Q Consensus 418 h~~~V~sLafSpdG~~LasGs~D-----G~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s 492 (1784)
.-..|....|+|.+++||--.-. ..+.+-.+-+ .+.++...-|.-.=..+.|-.+|
T Consensus 345 ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs---------~~~iRt~nlfnVsDckLhWQk~g---------- 405 (698)
T KOG2314|consen 345 KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS---------KREIRTKNLFNVSDCKLHWQKSG---------- 405 (698)
T ss_pred CCccccCcccCCCcceEEEEcccccCCcceEEEEecCc---------cceeeeccceeeeccEEEeccCC----------
Confidence 23457788999998777643211 1222222211 11222222121111122232222
Q ss_pred CCCCCCCccccccccCCeEEEE----------eCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCcee
Q 000251 493 SKEDSTPKFKNSWFCHDNIVTC----------SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 562 (1784)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~LVSg----------S~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~ 562 (1784)
++|+.- +.-..+-|+.++... ....
T Consensus 406 ----------------dyLcvkvdR~tK~~~~g~f~n~eIfrireKd-----------------------------Ipve 440 (698)
T KOG2314|consen 406 ----------------DYLCVKVDRHTKSKVKGQFSNLEIFRIREKD-----------------------------IPVE 440 (698)
T ss_pred ----------------cEEEEEEEeeccccccceEeeEEEEEeeccC-----------------------------CCce
Confidence 233221 111123333333211 0011
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEec---CCeEEEEECCC----CceEEEEecCCCCeEEEEEecCCCcEEEEE---eCCC
Q 000251 563 ILPTPRGVNMIVWSLDNRFVLAAIM---DCRICVWNAAD----GSLVHSLTGHTESTYVLDVHPFNPRIAMSA---GYDG 632 (1784)
Q Consensus 563 l~~h~~~VtsVafSPDG~~LaSgs~---DGsI~VWDl~t----gklv~~L~gH~~~VtsLafSPdd~~lLaSg---s~DG 632 (1784)
...-...|..++|-|.|..+++-+. -.++.+|.+.+ .+++..+.. ...+.|.|+| .|++++.+ |..|
T Consensus 441 ~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsP-kG~fvvva~l~s~~g 517 (698)
T KOG2314|consen 441 VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSP-KGRFVVVAALVSRRG 517 (698)
T ss_pred eeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcC-CCcEEEEEEeccccc
Confidence 1223456889999999998877543 24688888763 234444443 3457899999 45555443 4578
Q ss_pred cEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeC------CCeEEEEEC
Q 000251 633 KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDD------VGQLYILNT 681 (1784)
Q Consensus 633 ~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~------DG~I~IWdl 681 (1784)
.+.++|..-..+..+-...+...+.+.|.|.|+|+++++. |..-+||++
T Consensus 518 ~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 518 DLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred ceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEe
Confidence 9999999754444443334566788999999999998865 334455655
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.8e-08 Score=116.63 Aligned_cols=311 Identities=17% Similarity=0.218 Sum_probs=206.1
Q ss_pred ccceEEEEEccCCCCEEEEEECCCCCEEEEEcCCc---------------EEEEEECCCCeEEEEEecCCCC--eE-EEE
Q 000251 258 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDR---------------LVKIWSMETAYCLASCRGHEGD--IT-DLA 319 (1784)
Q Consensus 258 ~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DG---------------tIkIWDl~Tgk~l~tL~gH~~~--Vt-sLa 319 (1784)
..+..+.++. ...|.-+.|||.|+||.|=+..+ .+.|||+.+|.++..+.+.... .+ -+.
T Consensus 61 ~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k 138 (561)
T COG5354 61 PSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLK 138 (561)
T ss_pred cchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceee
Confidence 3333444443 35699999999999999865433 4999999999999999876666 55 778
Q ss_pred EcCCCCEEEEEeCCCEEEEEECCCCC----eeEEecCCCCceEEEEecCCCCccEEEEE-----EeCCCcEEEEecCCCc
Q 000251 320 VSSNNALVASASNDCIIRVWRLPDGL----PISVLRGHTAAVTAIAFSPRPGSVYQLLS-----SSDDGTCRIWDARYSQ 390 (1784)
Q Consensus 320 fSpDg~lLASGS~DGtIrVWDl~tgk----~i~~L~gH~~~VtsLafSPdg~~~~~LaS-----gs~DGtIrIWDl~tg~ 390 (1784)
|+.+.+++|-.. ...+.|+++ ++. +.+.++ ...|....|+|.++.. .|+. .+..+++++|.+..+.
T Consensus 139 ~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~-~la~~tPEk~~kpa~~~i~sIp~~s 213 (561)
T COG5354 139 FSIDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHD-ELAYWTPEKLNKPAMVRILSIPKNS 213 (561)
T ss_pred eeecchhhhhhc-cCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCc-eEEEEccccCCCCcEEEEEEccCCC
Confidence 998888777553 347999997 432 222232 3567888899976432 3333 4567888999887555
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEee-----------CCceEEEEcCCCCCCCCCCCC
Q 000251 391 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-----------SDTLARVWNACKPNTDDSDQP 459 (1784)
Q Consensus 391 ~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs-----------~DG~IrVWDl~tg~~~~s~~~ 459 (1784)
.+.+..+ ....=..+.|.+.|.+|++-. ....++|+++..
T Consensus 214 ~l~tk~l--------------------fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--------- 264 (561)
T COG5354 214 VLVTKNL--------------------FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--------- 264 (561)
T ss_pred eeeeeee--------------------EeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc---------
Confidence 4443322 111123567888887665431 124577887742
Q ss_pred CcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCe--EEEEeCCCcEEEEeCCCCCCCcccccc
Q 000251 460 NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN--IVTCSRDGSAIIWIPRSRRSHPKAARW 537 (1784)
Q Consensus 460 ~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~--LVSgS~DGtIrIWDl~t~~~~~~~~~w 537 (1784)
..+.....-.++|..++|.|.+ +. +++|-.+-.+.++|++..-
T Consensus 265 -~~i~V~~~~~~pVhdf~W~p~S--------------------------~~F~vi~g~~pa~~s~~~lr~Nl-------- 309 (561)
T COG5354 265 -RSIPVEKDLKDPVHDFTWEPLS--------------------------SRFAVISGYMPASVSVFDLRGNL-------- 309 (561)
T ss_pred -cccceeccccccceeeeecccC--------------------------CceeEEecccccceeecccccce--------
Confidence 2233333568899999999876 33 4455678888888887411
Q ss_pred cccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecC---CeEEEEECCCCceEE-EEecCCCCeE
Q 000251 538 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVH-SLTGHTESTY 613 (1784)
Q Consensus 538 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~D---GsI~VWDl~tgklv~-~L~gH~~~Vt 613 (1784)
+.......=+.+.|||.++++++++-| |.|-+||......+. .+.+.. ..
T Consensus 310 ------------------------~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s 363 (561)
T COG5354 310 ------------------------RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TS 363 (561)
T ss_pred ------------------------EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ce
Confidence 111222334567899999999997755 679999987655444 665543 34
Q ss_pred EEEEecCCCcEEEEEe------CCCcEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCC
Q 000251 614 VLDVHPFNPRIAMSAG------YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVG 674 (1784)
Q Consensus 614 sLafSPdd~~lLaSgs------~DG~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG 674 (1784)
-+.|+| ++.++.++. .|..|.|||+. |..+. ..+.+.|.|-|++..+.+..+
T Consensus 364 ~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~-g~~~f-------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 364 YCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVY-GAKVF-------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred EeeccC-CceEEEecCCCcccccCcceEEEEec-Cchhh-------hhhhccccCCcccceeeccCC
Confidence 568999 565555543 47889999993 33322 566788999998887766644
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-08 Score=130.89 Aligned_cols=194 Identities=20% Similarity=0.245 Sum_probs=152.2
Q ss_pred EEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCC----eEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEec
Q 000251 276 AIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD----ITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR 351 (1784)
Q Consensus 276 VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~----VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~ 351 (1784)
..+.-..+.++.++.+..+.|||...+..+..+...... ..-+.++++.-++++|+.-+.|.+|+..-...-..+.
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~ 172 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK 172 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence 455566778888888999999999888777665532221 1223356667799999999999999987333333688
Q ss_pred CCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCC
Q 000251 352 GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 431 (1784)
Q Consensus 352 gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG 431 (1784)
+|.+.|..+.|+-++. ++++.+.|.++++|++++.+... ....+|...|+.++|.|+
T Consensus 173 GHeG~iF~i~~s~dg~---~i~s~SdDRsiRlW~i~s~~~~~-------------------~~~fgHsaRvw~~~~~~n- 229 (967)
T KOG0974|consen 173 GHEGSIFSIVTSLDGR---YIASVSDDRSIRLWPIDSREVLG-------------------CTGFGHSARVWACCFLPN- 229 (967)
T ss_pred ccCCceEEEEEccCCc---EEEEEecCcceeeeecccccccC-------------------cccccccceeEEEEeccc-
Confidence 9999999999999997 99999999999999999887543 123468999999999998
Q ss_pred CEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCC-CceEEEEccCcccccccccCCCCCCCCCccccccccCCe
Q 000251 432 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN-DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 510 (1784)
Q Consensus 432 ~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~-~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~ 510 (1784)
.|++++.|-+.++|+.. ...+..+.+|.+ .|..++..+.. ..
T Consensus 230 -~i~t~gedctcrvW~~~----------~~~l~~y~~h~g~~iw~~~~~~~~--------------------------~~ 272 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWGVN----------GTQLEVYDEHSGKGIWKIAVPIGV--------------------------II 272 (967)
T ss_pred -eeEEeccceEEEEEecc----------cceehhhhhhhhcceeEEEEcCCc--------------------------eE
Confidence 89999999999999764 234446677754 57788777654 58
Q ss_pred EEEEeCCCcEEEEeCCCCC
Q 000251 511 IVTCSRDGSAIIWIPRSRR 529 (1784)
Q Consensus 511 LVSgS~DGtIrIWDl~t~~ 529 (1784)
++|++.||.+++|++....
T Consensus 273 ~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 273 KVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred EEeeccCcchhhhhhhccc
Confidence 8999999999999988644
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.2e-08 Score=123.02 Aligned_cols=233 Identities=14% Similarity=0.032 Sum_probs=145.5
Q ss_pred EEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---CEEEEEECCCCCeeEEecCCCCceEEEEecCCCCcc
Q 000251 293 LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV 369 (1784)
Q Consensus 293 tIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~D---GtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~ 369 (1784)
.|.++|...+. .+.+..+...+...+|+|||+.|+..+.+ ..|.+|++.+|.... +....+.+...+|+|+++
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~-- 255 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGS-- 255 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCC--
Confidence 58888887554 45555677889999999999999877643 479999998886543 333445566789999987
Q ss_pred EEEE-EEeCCC--cEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeC-Cc--eE
Q 000251 370 YQLL-SSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DT--LA 443 (1784)
Q Consensus 370 ~~La-Sgs~DG--tIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~-DG--~I 443 (1784)
.|+ +...+| .|.+||+.++.... +. .+........|+|||+.|+..+. +| .|
T Consensus 256 -~la~~~~~~g~~~Iy~~d~~~~~~~~-lt--------------------~~~~~~~~~~~spDg~~i~f~s~~~g~~~i 313 (430)
T PRK00178 256 -KLAFVLSKDGNPEIYVMDLASRQLSR-VT--------------------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQI 313 (430)
T ss_pred -EEEEEEccCCCceEEEEECCCCCeEE-cc--------------------cCCCCcCCeEECCCCCEEEEEECCCCCceE
Confidence 454 555555 57888988765321 11 11223455789999998776654 33 57
Q ss_pred EEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeC-CC--cE
Q 000251 444 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR-DG--SA 520 (1784)
Q Consensus 444 rVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~-DG--tI 520 (1784)
+++++.+++ ...+...........|+|++ +.|+..+. ++ .|
T Consensus 314 y~~d~~~g~----------~~~lt~~~~~~~~~~~Spdg--------------------------~~i~~~~~~~~~~~l 357 (430)
T PRK00178 314 YKVNVNGGR----------AERVTFVGNYNARPRLSADG--------------------------KTLVMVHRQDGNFHV 357 (430)
T ss_pred EEEECCCCC----------EEEeecCCCCccceEECCCC--------------------------CEEEEEEccCCceEE
Confidence 777775432 11111111223456788876 45554443 33 47
Q ss_pred EEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecC---CeEEEEECC
Q 000251 521 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAA 597 (1784)
Q Consensus 521 rIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~D---GsI~VWDl~ 597 (1784)
.+||+.++.. ..+. .........|+|||++|+..+.+ ..|.++++.
T Consensus 358 ~~~dl~tg~~------------------------------~~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 358 AAQDLQRGSV------------------------------RILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred EEEECCCCCE------------------------------EEcc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 7788775321 0000 01111235799999999887654 357777874
Q ss_pred CCceEEEEecCCCCeEEEEEec
Q 000251 598 DGSLVHSLTGHTESTYVLDVHP 619 (1784)
Q Consensus 598 tgklv~~L~gH~~~VtsLafSP 619 (1784)
|.....+..+.+.+...+|+|
T Consensus 407 -g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 407 -GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred -CCceEECcCCCCCcCCCccCC
Confidence 555556666666778888887
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.2e-08 Score=122.17 Aligned_cols=233 Identities=15% Similarity=0.051 Sum_probs=142.0
Q ss_pred CEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCC---CcEEEEecCCCcccceeecCCCCCcccCCCCC
Q 000251 334 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD---GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 410 (1784)
Q Consensus 334 GtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~D---GtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~ 410 (1784)
..|.++|.. +.....+..+...+...+|+|+++ +|+.+..+ ..|.+||+.++......
T Consensus 170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~---~la~~~~~~~~~~i~v~d~~~g~~~~~~--------------- 230 (417)
T TIGR02800 170 YELQVADYD-GANPQTITRSREPILSPAWSPDGQ---KLAYVSFESGKPEIYVQDLATGQREKVA--------------- 230 (417)
T ss_pred ceEEEEcCC-CCCCEEeecCCCceecccCCCCCC---EEEEEEcCCCCcEEEEEECCCCCEEEee---------------
Confidence 468888875 444455666777899999999998 66665543 47999999887532211
Q ss_pred CCCCCCCCCCceEEEEECCCCCEEEE-eeCCc--eEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccc
Q 000251 411 PSSSAGPQSHQIFCCAFNANGTVFVT-GSSDT--LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 487 (1784)
Q Consensus 411 ~~~s~~~h~~~V~sLafSpdG~~Las-Gs~DG--~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~ 487 (1784)
.....+.+++|+|||+.|+. .+.++ .|++|++.++. ...+..+........|+|++
T Consensus 231 ------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~----------~~~l~~~~~~~~~~~~s~dg----- 289 (417)
T TIGR02800 231 ------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ----------LTRLTNGPGIDTEPSWSPDG----- 289 (417)
T ss_pred ------cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC----------EEECCCCCCCCCCEEECCCC-----
Confidence 11233556899999987764 34343 58888886432 23334444445567888876
Q ss_pred cccCCCCCCCCCccccccccCCeEEEEe-CCC--cEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceecc
Q 000251 488 SLADSSKEDSTPKFKNSWFCHDNIVTCS-RDG--SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 564 (1784)
Q Consensus 488 ~~~~s~~~~~~~~~~~~~~~~~~LVSgS-~DG--tIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~ 564 (1784)
..|+..+ .+| .|.+|++.+++ ...+.
T Consensus 290 ---------------------~~l~~~s~~~g~~~iy~~d~~~~~------------------------------~~~l~ 318 (417)
T TIGR02800 290 ---------------------KSIAFTSDRGGSPQIYMMDADGGE------------------------------VRRLT 318 (417)
T ss_pred ---------------------CEEEEEECCCCCceEEEEECCCCC------------------------------EEEee
Confidence 4555444 344 46666655321 11222
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCC---eEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeC
Q 000251 565 PTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG--KTIVWDI 639 (1784)
Q Consensus 565 ~h~~~VtsVafSPDG~~LaSgs~DG---sI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG--~IrIWDl 639 (1784)
.+...+..++|+|+|++|+.++.++ .|.+||+.++... .+... .......|+|++..++++...++ .+.+.+.
T Consensus 319 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 319 FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 2334456789999999999988776 7999999886543 33322 22445689995555555544443 3455554
Q ss_pred CCCceEEEEeccCcceEEEEE
Q 000251 640 WEGIPIRIYEISRFRLVDGKF 660 (1784)
Q Consensus 640 ~tG~~l~tl~~~~~~Itslaf 660 (1784)
+|.....+..+.+.+..++|
T Consensus 397 -~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 397 -DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred -CCceeeECCCCCCCcCCCCC
Confidence 45555555434444444444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.4e-07 Score=119.92 Aligned_cols=350 Identities=14% Similarity=0.164 Sum_probs=208.4
Q ss_pred CCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEE------------------------EEEec---------------
Q 000251 270 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL------------------------ASCRG--------------- 310 (1784)
Q Consensus 270 ~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l------------------------~tL~g--------------- 310 (1784)
...|.|++||||+..||..+.+++|.+-+-. ...+ ..|+|
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 5789999999999999999988888876421 1111 11111
Q ss_pred ---------CCCCeEEEEEcCCCCEEEEEeC---C---CEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEE
Q 000251 311 ---------HEGDITDLAVSSNNALVASASN---D---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 375 (1784)
Q Consensus 311 ---------H~~~VtsLafSpDg~lLASGS~---D---GtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSg 375 (1784)
+...-..|+|-.||.++|+.+. . ..|+||+- .|....+-..-.+--.+++|.|.|+ ++|+.
T Consensus 199 ~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~---lIA~~ 274 (928)
T PF04762_consen 199 PKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGN---LIASS 274 (928)
T ss_pred CccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCC---EEEEE
Confidence 2234567889999999998875 2 57999994 4766555554455567889999997 66666
Q ss_pred eC---CCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCC
Q 000251 376 SD---DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPN 452 (1784)
Q Consensus 376 s~---DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~ 452 (1784)
.. ...|.+|.-+ |-....+.++ .......|..++|++|+..||+...|. |.+|-..+..
T Consensus 275 q~~~~~~~VvFfErN-GLrhgeF~l~----------------~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 275 QRLPDRHDVVFFERN-GLRHGEFTLR----------------FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred EEcCCCcEEEEEecC-CcEeeeEecC----------------CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 53 3456666643 3222233221 123456789999999999999987665 9999885422
Q ss_pred CCCCCCCCcceeeecC-CCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCC----C
Q 000251 453 TDDSDQPNHEIDVLSG-HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR----S 527 (1784)
Q Consensus 453 ~~~s~~~~~~i~~l~g-H~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~----t 527 (1784)
+...+.+.. ....+..+.|+|.. ...|...+.+|.+.++++. .
T Consensus 337 -------WYLKqei~~~~~~~~~~~~Wdpe~-------------------------p~~L~v~t~~g~~~~~~~~~~v~~ 384 (928)
T PF04762_consen 337 -------WYLKQEIRFSSSESVNFVKWDPEK-------------------------PLRLHVLTSNGQYEIYDFAWDVSR 384 (928)
T ss_pred -------EEEEEEEEccCCCCCCceEECCCC-------------------------CCEEEEEecCCcEEEEEEEEEEEe
Confidence 222223332 23345558888753 2345555555555443322 1
Q ss_pred CCCC-----ccccc----c--cccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEEC
Q 000251 528 RRSH-----PKAAR----W--TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 596 (1784)
Q Consensus 528 ~~~~-----~~~~~----w--~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl 596 (1784)
.... +.... - ...+....-|+||. .........|..++|++++..+++-..||.|.+|..
T Consensus 385 s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs---------~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 385 SPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMS---------SYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred cCCCCccCceEEEEEeCCeEEEecccccCCCchHh---------ceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 1100 00000 0 00011111122221 112234578999999999998999999999999985
Q ss_pred CCCce--------EEEEe----------cCCCCeEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCc---eEEEEeccC
Q 000251 597 ADGSL--------VHSLT----------GHTESTYVLDVHPFNPRIAMSAGYD---GKTIVWDIWEGI---PIRIYEISR 652 (1784)
Q Consensus 597 ~tgkl--------v~~L~----------gH~~~VtsLafSPdd~~lLaSgs~D---G~IrIWDl~tG~---~l~tl~~~~ 652 (1784)
..... ...+. .....+..++|.. ...+++....+ ..+.++++.... .+.......
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 534 (928)
T PF04762_consen 456 DLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLN-DDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVD 534 (928)
T ss_pred cCCCcccccCcchhhhcccccccccccccccccEEEEEEeC-CCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccC
Confidence 43221 11111 1234567888876 44444444443 678888885432 333333344
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000251 653 FRLVDGKFSPDGASIILSDDVGQLYILNTGQG 684 (1784)
Q Consensus 653 ~~ItslafSPDGk~LAsgs~DG~I~IWdl~sG 684 (1784)
..+..+...++...++.-..+|.|+..+....
T Consensus 535 ~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 535 GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGE 566 (928)
T ss_pred ceEEEEeeCCCCcEEEEEECCCEEEEeecCCC
Confidence 55666666666665777778899987766543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-06 Score=107.92 Aligned_cols=310 Identities=13% Similarity=0.114 Sum_probs=180.9
Q ss_pred cEEEEEEC--CCCeEEEEE-ecCCCCeEEEEEcCCCCEEEEEeC----CCEEEEEECCCC--C--eeEEecCCCCceEEE
Q 000251 292 RLVKIWSM--ETAYCLASC-RGHEGDITDLAVSSNNALVASASN----DCIIRVWRLPDG--L--PISVLRGHTAAVTAI 360 (1784)
Q Consensus 292 GtIkIWDl--~Tgk~l~tL-~gH~~~VtsLafSpDg~lLASGS~----DGtIrVWDl~tg--k--~i~~L~gH~~~VtsL 360 (1784)
+.|.+|.+ .++++...- ..-......|+++|++++|.++.. ++.|..|.+... . .+............+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 68888887 556543221 123455678899999999998876 579999988653 3 233333234556679
Q ss_pred EecCCCCccEEEEEEe-CCCcEEEEecCC-CcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEee
Q 000251 361 AFSPRPGSVYQLLSSS-DDGTCRIWDARY-SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 438 (1784)
Q Consensus 361 afSPdg~~~~~LaSgs-~DGtIrIWDl~t-g~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs 438 (1784)
+++|+++ +|+++. .+|.|.++++.. +.+.......... +.. ..........+.++.|+|+|+++++..
T Consensus 93 ~~~~~g~---~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~----g~g---~~~~rq~~~h~H~v~~~pdg~~v~v~d 162 (345)
T PF10282_consen 93 AVDPDGR---FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHE----GSG---PNPDRQEGPHPHQVVFSPDGRFVYVPD 162 (345)
T ss_dssp EECTTSS---EEEEEETTTTEEEEEEECTTSEEEEEEEEEESE----EEE---SSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred EEecCCC---EEEEEEccCCeEEEEEccCCcccceeeeecccC----CCC---CcccccccccceeEEECCCCCEEEEEe
Confidence 9999987 555554 689999999987 3333221110000 000 000112334578899999999887764
Q ss_pred C-CceEEEEcCCCCCCCCCCCCCcceeee-cCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeC
Q 000251 439 S-DTLARVWNACKPNTDDSDQPNHEIDVL-SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR 516 (1784)
Q Consensus 439 ~-DG~IrVWDl~tg~~~~s~~~~~~i~~l-~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~ 516 (1784)
. ...|.+|++..... .......+ ......-..+.|+|++ ...+++.-.
T Consensus 163 lG~D~v~~~~~~~~~~-----~l~~~~~~~~~~G~GPRh~~f~pdg-------------------------~~~Yv~~e~ 212 (345)
T PF10282_consen 163 LGADRVYVYDIDDDTG-----KLTPVDSIKVPPGSGPRHLAFSPDG-------------------------KYAYVVNEL 212 (345)
T ss_dssp TTTTEEEEEEE-TTS------TEEEEEEEECSTTSSEEEEEE-TTS-------------------------SEEEEEETT
T ss_pred cCCCEEEEEEEeCCCc-----eEEEeeccccccCCCCcEEEEcCCc-------------------------CEEEEecCC
Confidence 3 45799999864321 01111122 2334456789999886 234566777
Q ss_pred CCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEE
Q 000251 517 DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWN 595 (1784)
Q Consensus 517 DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs-~DGsI~VWD 595 (1784)
+++|.++++..... .+.....+...+. -.........|+++|||++|+++. ..+.|.+|+
T Consensus 213 s~~v~v~~~~~~~g-----~~~~~~~~~~~~~--------------~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 213 SNTVSVFDYDPSDG-----SLTEIQTISTLPE--------------GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp TTEEEEEEEETTTT-----EEEEEEEEESCET--------------TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred CCcEEEEeecccCC-----ceeEEEEeeeccc--------------cccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 89999998873111 1111100000000 001113577899999999987755 567899999
Q ss_pred C--CCCce--EEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC--CCCceEEEEe-ccCcceEEEEE
Q 000251 596 A--ADGSL--VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI--WEGIPIRIYE-ISRFRLVDGKF 660 (1784)
Q Consensus 596 l--~tgkl--v~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl--~tG~~l~tl~-~~~~~Itslaf 660 (1784)
+ .+|++ +..+......-..++++|++..++++...++.|.+|++ .+|.+...-. ..-....||.|
T Consensus 274 ~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 274 LDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp ECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 8 33544 33444334447899999965555555557789999976 5776655442 23345566665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=6e-08 Score=123.01 Aligned_cols=234 Identities=13% Similarity=0.022 Sum_probs=143.0
Q ss_pred EEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---CEEEEEECCCCCeeEEecCCCCceEEEEecCCCCcc
Q 000251 293 LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV 369 (1784)
Q Consensus 293 tIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~D---GtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~ 369 (1784)
.|.++|..... .+.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +....+.....+|+||++
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~-- 274 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGK-- 274 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCC--
Confidence 67778875443 34555677889999999999998876543 368999998886533 222234455789999997
Q ss_pred EEEEEEeCCCc--EEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeC-Cc--eEE
Q 000251 370 YQLLSSSDDGT--CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DT--LAR 444 (1784)
Q Consensus 370 ~~LaSgs~DGt--IrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~-DG--~Ir 444 (1784)
.++++.+.+|. |.+||+.+++.. .+. .+.......+|+|||+.|+..+. ++ .|+
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~-~lt--------------------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy 333 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALT-RIT--------------------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIY 333 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeE-ECc--------------------cCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 23345566675 777788766532 111 11223456789999998876653 33 466
Q ss_pred EEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEE-eCCCc--EE
Q 000251 445 VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC-SRDGS--AI 521 (1784)
Q Consensus 445 VWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSg-S~DGt--Ir 521 (1784)
++++.+++ ...+..........+|+|++ +.|+.. ..++. |.
T Consensus 334 ~~dl~~g~----------~~~Lt~~g~~~~~~~~SpDG--------------------------~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 334 RVNLASGK----------VSRLTFEGEQNLGGSITPDG--------------------------RSMIMVNRTNGKFNIA 377 (448)
T ss_pred EEECCCCC----------EEEEecCCCCCcCeeECCCC--------------------------CEEEEEEecCCceEEE
Confidence 66664421 11222122223456888887 455444 33444 44
Q ss_pred EEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecC-C--eEEEEECCC
Q 000251 522 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD-C--RICVWNAAD 598 (1784)
Q Consensus 522 IWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~D-G--sI~VWDl~t 598 (1784)
++|+.++.. ..+... .......|+|||++|+..+.+ + .|+++++ +
T Consensus 378 ~~dl~~g~~------------------------------~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~ 425 (448)
T PRK04792 378 RQDLETGAM------------------------------QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-D 425 (448)
T ss_pred EEECCCCCe------------------------------EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-C
Confidence 456554221 000000 011234799999998876543 3 3777886 6
Q ss_pred CceEEEEecCCCCeEEEEEec
Q 000251 599 GSLVHSLTGHTESTYVLDVHP 619 (1784)
Q Consensus 599 gklv~~L~gH~~~VtsLafSP 619 (1784)
|.....+..+.+.+...+|+|
T Consensus 426 G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEECcCCCCCcCCCccCC
Confidence 777777877777788889987
|
|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3e-10 Score=155.54 Aligned_cols=91 Identities=13% Similarity=0.251 Sum_probs=85.1
Q ss_pred HHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCcHHHH
Q 000251 1679 FAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLST 1758 (1784)
Q Consensus 1679 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s~i~~ 1758 (1784)
+..++..+..+.++|+|..||+...+|+||.||++||||.||+.+|.-++|.+.++|.-||+|||.||++||++ |.|++
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ 1384 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEIGR 1384 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhhhh
Confidence 45555556678999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHH
Q 000251 1759 KIKRLSDLVTRT 1770 (1784)
Q Consensus 1759 ~a~~l~~~~~~~ 1770 (1784)
.+-.|..+|...
T Consensus 1385 ag~~l~~ff~~~ 1396 (1404)
T KOG1245|consen 1385 AGTCLRRFFHKR 1396 (1404)
T ss_pred hcchHHHHHHHH
Confidence 999999999863
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-07 Score=119.26 Aligned_cols=249 Identities=13% Similarity=0.048 Sum_probs=148.3
Q ss_pred CEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCC--cEEEEecCCCcccceeecCCCCCcccCCCCCC
Q 000251 334 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 411 (1784)
Q Consensus 334 GtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DG--tIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~ 411 (1784)
..|.+.|...+.. +.+......+..-+|+|||+...++++...+| .|.+.++.+++......
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~--------------- 228 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA--------------- 228 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec---------------
Confidence 4677778654443 44555566778889999987332333444444 47777887765322211
Q ss_pred CCCCCCCCCceEEEEECCCCCEEEEeeC-----CceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccc
Q 000251 412 SSSAGPQSHQIFCCAFNANGTVFVTGSS-----DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 486 (1784)
Q Consensus 412 ~~s~~~h~~~V~sLafSpdG~~LasGs~-----DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~ 486 (1784)
..+.....+|+|||+.|+..+. +..+.+|++..+. .+........+.......+|+|+|
T Consensus 229 ------~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~------~g~~~~lt~~~~~~~~~p~wSPDG---- 292 (428)
T PRK01029 229 ------LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA------IGKPRRLLNEAFGTQGNPSFSPDG---- 292 (428)
T ss_pred ------CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCC------CCcceEeecCCCCCcCCeEECCCC----
Confidence 1222345789999988886553 2234446664321 011122222333445678999997
Q ss_pred ccccCCCCCCCCCccccccccCCeEEEE-eCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccC
Q 000251 487 FSLADSSKEDSTPKFKNSWFCHDNIVTC-SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 565 (1784)
Q Consensus 487 ~~~~~s~~~~~~~~~~~~~~~~~~LVSg-S~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 565 (1784)
..|+.. ..+|...||.+.... .+.....+..
T Consensus 293 ----------------------~~Laf~s~~~g~~~ly~~~~~~--------------------------~g~~~~~lt~ 324 (428)
T PRK01029 293 ----------------------TRLVFVSNKDGRPRIYIMQIDP--------------------------EGQSPRLLTK 324 (428)
T ss_pred ----------------------CEEEEEECCCCCceEEEEECcc--------------------------cccceEEecc
Confidence 455544 456766666443100 0011122223
Q ss_pred CCCCeeEEEEcCCCCEEEEEecC---CeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeC--CCcEEEEeCC
Q 000251 566 TPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY--DGKTIVWDIW 640 (1784)
Q Consensus 566 h~~~VtsVafSPDG~~LaSgs~D---GsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~--DG~IrIWDl~ 640 (1784)
....+...+|||||++|+..+.+ ..|++||+.+++... +......+....|+|++..+++++.. ...|.+||+.
T Consensus 325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 33456788999999999876543 469999999887654 33334456789999965555555543 3568899998
Q ss_pred CCceEEEEeccCcceEEEEEcCCC
Q 000251 641 EGIPIRIYEISRFRLVDGKFSPDG 664 (1784)
Q Consensus 641 tG~~l~tl~~~~~~ItslafSPDG 664 (1784)
.++...... ..+.+...+|+|-.
T Consensus 404 ~g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 404 TKKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred CCCEEEeec-CCCcccCceecCCC
Confidence 777655443 55567778888854
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-06 Score=106.16 Aligned_cols=286 Identities=12% Similarity=0.022 Sum_probs=168.4
Q ss_pred cEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC----------CCEEEEEECCCCCeeEEecCC-------C
Q 000251 292 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN----------DCIIRVWRLPDGLPISVLRGH-------T 354 (1784)
Q Consensus 292 GtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~----------DGtIrVWDl~tgk~i~~L~gH-------~ 354 (1784)
++|.|.|..+++.+.++..-..+- .+ ++|||+.|+++.. +..|.|||+.+++.+..+.-. .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999999999999887433333 24 9999998877765 689999999999999888632 2
Q ss_pred CceEEEEecCCCCccEEEEEEe-C-CCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCC
Q 000251 355 AAVTAIAFSPRPGSVYQLLSSS-D-DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 432 (1784)
Q Consensus 355 ~~VtsLafSPdg~~~~~LaSgs-~-DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~ 432 (1784)
.....++++|||+ +|++.. . +..|.+.|+.+++.+..+..+... .-...+.++.
T Consensus 105 ~~~~~~~ls~dgk---~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~---------------------~vy~t~e~~~ 160 (352)
T TIGR02658 105 TYPWMTSLTPDNK---TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY---------------------HIFPTANDTF 160 (352)
T ss_pred CccceEEECCCCC---EEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc---------------------EEEEecCCcc
Confidence 2344789999998 565544 3 789999999999988877542211 1111111111
Q ss_pred EEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceE-EEEccCcccccccccCCCCCCCCCccccccccCCeE
Q 000251 433 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNY-VQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 511 (1784)
Q Consensus 433 ~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~s-LafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~L 511 (1784)
+ +.+.||......+...... . ......+.+-...+.. -.|.+. .+..+
T Consensus 161 ~--~~~~Dg~~~~v~~d~~g~~---~-~~~~~vf~~~~~~v~~rP~~~~~-------------------------dg~~~ 209 (352)
T TIGR02658 161 F--MHCRDGSLAKVGYGTKGNP---K-IKPTEVFHPEDEYLINHPAYSNK-------------------------SGRLV 209 (352)
T ss_pred E--EEeecCceEEEEecCCCce---E-EeeeeeecCCccccccCCceEcC-------------------------CCcEE
Confidence 1 1122333333222110000 0 0000000000000000 011220 12334
Q ss_pred EEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe-----
Q 000251 512 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI----- 586 (1784)
Q Consensus 512 VSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs----- 586 (1784)
..... |+|.+.|+........ ..|... . ... ..---....+.-++++++|+.+++..
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~-~~~~~~---~------------~~~-~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~ 271 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFL-PAIEAF---T------------EAE-KADGWRPGGWQQVAYHRARDRIYLLADQRAK 271 (352)
T ss_pred EEecC-CeEEEEecCCCcceec-ceeeec---c------------ccc-cccccCCCcceeEEEcCCCCEEEEEecCCcc
Confidence 33333 9999999765331110 111000 0 000 00001223445599999999988743
Q ss_pred -----cCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCceEEEE-eccCc
Q 000251 587 -----MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP-RIAMSAGYDGKTIVWDIWEGIPIRIY-EISRF 653 (1784)
Q Consensus 587 -----~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~-~lLaSgs~DG~IrIWDl~tG~~l~tl-~~~~~ 653 (1784)
..+.|.++|..+++.+..+.. ...+..|+++|++. .++++...++.|.|.|+.+++.++.+ ..+..
T Consensus 272 ~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~vg~~ 344 (352)
T TIGR02658 272 WTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQLGRG 344 (352)
T ss_pred ccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccCCCC
Confidence 224799999999999998874 34688999999665 44445557889999999999999998 43333
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.2e-08 Score=120.79 Aligned_cols=235 Identities=12% Similarity=0.041 Sum_probs=142.4
Q ss_pred EEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCC---CcEEEEecCCCcccceeecCCCCCcccCCCCCC
Q 000251 335 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD---GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 411 (1784)
Q Consensus 335 tIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~D---GtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~ 411 (1784)
.|.++|...+. ...+..+...+...+|+|+++ .|+..+.+ ..|.+||+.++......
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~---~la~~s~~~~~~~l~~~~l~~g~~~~l~---------------- 239 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGK---RIAYVSFEQKRPRIFVQNLDTGRREQIT---------------- 239 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCC---EEEEEEcCCCCCEEEEEECCCCCEEEcc----------------
Confidence 57888876444 455656778899999999997 66655433 36888999877532111
Q ss_pred CCCCCCCCCceEEEEECCCCCEEEE-eeCCc--eEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccc
Q 000251 412 SSSAGPQSHQIFCCAFNANGTVFVT-GSSDT--LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFS 488 (1784)
Q Consensus 412 ~~s~~~h~~~V~sLafSpdG~~Las-Gs~DG--~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~ 488 (1784)
...+.+...+|+|||+.|+. ...+| .|++||+.++. ...+..+........|+|++
T Consensus 240 -----~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~----------~~~lt~~~~~~~~~~~spDg------ 298 (430)
T PRK00178 240 -----NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ----------LSRVTNHPAIDTEPFWGKDG------ 298 (430)
T ss_pred -----CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC----------eEEcccCCCCcCCeEECCCC------
Confidence 01122346889999998874 33444 68888886532 23344455556678899887
Q ss_pred ccCCCCCCCCCccccccccCCeEE-EEeCCC--cEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccC
Q 000251 489 LADSSKEDSTPKFKNSWFCHDNIV-TCSRDG--SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 565 (1784)
Q Consensus 489 ~~~s~~~~~~~~~~~~~~~~~~LV-SgS~DG--tIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 565 (1784)
..|+ +...+| .|.++++.+++. .++..
T Consensus 299 --------------------~~i~f~s~~~g~~~iy~~d~~~g~~------------------------------~~lt~ 328 (430)
T PRK00178 299 --------------------RTLYFTSDRGGKPQIYKVNVNGGRA------------------------------ERVTF 328 (430)
T ss_pred --------------------CEEEEEECCCCCceEEEEECCCCCE------------------------------EEeec
Confidence 3444 433444 455566554221 00110
Q ss_pred CCCCeeEEEEcCCCCEEEEEecC-C--eEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCC
Q 000251 566 TPRGVNMIVWSLDNRFVLAAIMD-C--RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG--KTIVWDIW 640 (1784)
Q Consensus 566 h~~~VtsVafSPDG~~LaSgs~D-G--sI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG--~IrIWDl~ 640 (1784)
........+|+|||++|+..+.+ + .|.+||+.+++... +.. ........|+|++..++++...+| .|.++++
T Consensus 329 ~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~- 405 (430)
T PRK00178 329 VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI- 405 (430)
T ss_pred CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEEC-
Confidence 11122346899999999887643 2 58899998886543 332 222235689996555555554444 4667777
Q ss_pred CCceEEEEeccCcceEEEEEcCC
Q 000251 641 EGIPIRIYEISRFRLVDGKFSPD 663 (1784)
Q Consensus 641 tG~~l~tl~~~~~~ItslafSPD 663 (1784)
+|.....+..+.+.+...+|+|-
T Consensus 406 ~g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 406 NGRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCCceEECcCCCCCcCCCccCCC
Confidence 45555555545556677778763
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.4e-08 Score=113.45 Aligned_cols=272 Identities=19% Similarity=0.257 Sum_probs=167.8
Q ss_pred CCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCe-----EEEEEecCC------------CCeEEEEEcCCCC--EEEEE
Q 000251 270 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY-----CLASCRGHE------------GDITDLAVSSNNA--LVASA 330 (1784)
Q Consensus 270 ~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk-----~l~tL~gH~------------~~VtsLafSpDg~--lLASG 330 (1784)
..-|.||.|..+|.+||||..+|.|.++.-.... ....+..|. ..|..+.|.+++. .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3568999999999999999999999999654322 233344443 4688899998765 55666
Q ss_pred eCCCEEEEEECCCCC-----------------------------------eeEEe-cCCCCceEEEEecCCCCccEEEEE
Q 000251 331 SNDCIIRVWRLPDGL-----------------------------------PISVL-RGHTAAVTAIAFSPRPGSVYQLLS 374 (1784)
Q Consensus 331 S~DGtIrVWDl~tgk-----------------------------------~i~~L-~gH~~~VtsLafSPdg~~~~~LaS 374 (1784)
+.|.+|++|.+.... +.+.+ .+|+.-|.+|.+..|.. .+++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E---t~lS 181 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE---TFLS 181 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc---eEee
Confidence 789999999874210 00111 25778899999999876 5555
Q ss_pred EeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCC-CCEEEEeeCCceEEEEcCCCCCC
Q 000251 375 SSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNT 453 (1784)
Q Consensus 375 gs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpd-G~~LasGs~DG~IrVWDl~tg~~ 453 (1784)
+ .|=.|-+|+++-......+.-..|.. ......-|++..|+|. -++|+-.+..|+|++.|++....
T Consensus 182 A-DdLRINLWnlei~d~sFnIVDIKP~n------------mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 182 A-DDLRINLWNLEIIDQSFNIVDIKPAN------------MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL 248 (433)
T ss_pred c-cceeeeeccccccCCceeEEEccccC------------HHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh
Confidence 4 56779999987554443332211110 0112334788889995 46788888899999999984322
Q ss_pred CCC-------CCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCC
Q 000251 454 DDS-------DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 526 (1784)
Q Consensus 454 ~~s-------~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~ 526 (1784)
... .........+..--..|..+.|++.| .++++ -.=-+|++||+.
T Consensus 249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG--------------------------ryils-RDyltvk~wD~n 301 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG--------------------------RYILS-RDYLTVKLWDLN 301 (433)
T ss_pred hcchhhhhccccCCcchhhHHHHhhhhhceEEccCC--------------------------cEEEE-eccceeEEEecc
Confidence 110 01111112233344577888899876 45544 233689999986
Q ss_pred CCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCC---CeeEEEEcCCCCEEEEEecCCeEEEEECCCCc
Q 000251 527 SRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR---GVNMIVWSLDNRFVLAAIMDCRICVWNAADGS 600 (1784)
Q Consensus 527 t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~---~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgk 600 (1784)
...... .+.+.... ....+..+. ... .-..++|+-++.+++||+....++++++..|.
T Consensus 302 me~~pv---~t~~vh~~------------lr~kLc~lY-EnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 302 MEAKPV---ETYPVHEY------------LRSKLCSLY-ENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred ccCCcc---eEEeehHh------------HHHHHHHHh-hccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 321100 00000000 000000000 111 12467899999999999999999999976653
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.3e-08 Score=121.70 Aligned_cols=234 Identities=15% Similarity=0.046 Sum_probs=143.2
Q ss_pred EEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeC-CC--cEEEEecCCCcccceeecCCCCCcccCCCCCC
Q 000251 335 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD-DG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 411 (1784)
Q Consensus 335 tIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~-DG--tIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~ 411 (1784)
.|.++|.... ..+.+..+...+.+..|+||++ .|+..+. ++ .|.+||+.+++......
T Consensus 199 ~l~i~d~dG~-~~~~l~~~~~~~~~p~wSPDG~---~La~~s~~~g~~~L~~~dl~tg~~~~lt~--------------- 259 (448)
T PRK04792 199 QLMIADYDGY-NEQMLLRSPEPLMSPAWSPDGR---KLAYVSFENRKAEIFVQDIYTQVREKVTS--------------- 259 (448)
T ss_pred EEEEEeCCCC-CceEeecCCCcccCceECCCCC---EEEEEEecCCCcEEEEEECCCCCeEEecC---------------
Confidence 6777786443 3355666778899999999997 5655433 33 58888988765321110
Q ss_pred CCCCCCCCCceEEEEECCCCCEEEE-eeCCce--EEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccc
Q 000251 412 SSSAGPQSHQIFCCAFNANGTVFVT-GSSDTL--ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFS 488 (1784)
Q Consensus 412 ~~s~~~h~~~V~sLafSpdG~~Las-Gs~DG~--IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~ 488 (1784)
........+|+|||+.|+. ...+|. |++||+.++ .+..+..+...+....|+|++
T Consensus 260 ------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg----------~~~~lt~~~~~~~~p~wSpDG------ 317 (448)
T PRK04792 260 ------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK----------ALTRITRHRAIDTEPSWHPDG------ 317 (448)
T ss_pred ------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC----------CeEECccCCCCccceEECCCC------
Confidence 0112335789999997765 455564 777787543 233444455566778899987
Q ss_pred ccCCCCCCCCCccccccccCCeEE-EEeCCCc--EEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccC
Q 000251 489 LADSSKEDSTPKFKNSWFCHDNIV-TCSRDGS--AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 565 (1784)
Q Consensus 489 ~~~s~~~~~~~~~~~~~~~~~~LV-SgS~DGt--IrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 565 (1784)
..|+ +...+|. |.++|+.+++ ...+..
T Consensus 318 --------------------~~I~f~s~~~g~~~Iy~~dl~~g~------------------------------~~~Lt~ 347 (448)
T PRK04792 318 --------------------KSLIFTSERGGKPQIYRVNLASGK------------------------------VSRLTF 347 (448)
T ss_pred --------------------CEEEEEECCCCCceEEEEECCCCC------------------------------EEEEec
Confidence 3444 4444554 4445554322 111111
Q ss_pred CCCCeeEEEEcCCCCEEEEEecC-C--eEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEeCC
Q 000251 566 TPRGVNMIVWSLDNRFVLAAIMD-C--RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK--TIVWDIW 640 (1784)
Q Consensus 566 h~~~VtsVafSPDG~~LaSgs~D-G--sI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~--IrIWDl~ 640 (1784)
........+|+|||++|+..+.+ + .|.++|+.+++... +.... ......|+|++..++++...+|. |.++++
T Consensus 348 ~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~- 424 (448)
T PRK04792 348 EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI- 424 (448)
T ss_pred CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-
Confidence 11122346899999999886553 3 46778888886543 33221 22345899966666666665554 677787
Q ss_pred CCceEEEEeccCcceEEEEEcC
Q 000251 641 EGIPIRIYEISRFRLVDGKFSP 662 (1784)
Q Consensus 641 tG~~l~tl~~~~~~ItslafSP 662 (1784)
+|.....+..+.+.+...+|||
T Consensus 425 ~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 425 DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCCceEECcCCCCCcCCCccCC
Confidence 6777777765666677788887
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-06 Score=106.53 Aligned_cols=283 Identities=13% Similarity=0.171 Sum_probs=171.6
Q ss_pred EEEEeCC----CEEEEEEC--CCCCee--EEecCCCCceEEEEecCCCCccEEEEEEeC----CCcEEEEecCCC--ccc
Q 000251 327 VASASND----CIIRVWRL--PDGLPI--SVLRGHTAAVTAIAFSPRPGSVYQLLSSSD----DGTCRIWDARYS--QFS 392 (1784)
Q Consensus 327 LASGS~D----GtIrVWDl--~tgk~i--~~L~gH~~~VtsLafSPdg~~~~~LaSgs~----DGtIrIWDl~tg--~~l 392 (1784)
+++|+.. +.|.+|++ .+++.. ..+ ........|+++|+++ +|.++.. +|.|..|.+... .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~---~LY~~~e~~~~~g~v~~~~i~~~~g~L~ 77 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGR---RLYVVNEGSGDSGGVSSYRIDPDTGTLT 77 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSS---EEEEEETTSSTTTEEEEEEEETTTTEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCC---EEEEEEccccCCCCEEEEEECCCcceeE
Confidence 4556665 68999887 445432 222 2334566789999987 6766655 578999988764 221
Q ss_pred ceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEee-CCceEEEEcCCCCCCCCCCCCCcceeee-----
Q 000251 393 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHEIDVL----- 466 (1784)
Q Consensus 393 ~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs-~DG~IrVWDl~tg~~~~s~~~~~~i~~l----- 466 (1784)
..-.. .........++++|++++|+++. .+|.|.++++.... ........+
T Consensus 78 ~~~~~------------------~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g-----~l~~~~~~~~~~g~ 134 (345)
T PF10282_consen 78 LLNSV------------------PSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG-----SLGEVVQTVRHEGS 134 (345)
T ss_dssp EEEEE------------------EESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS-----EEEEEEEEEESEEE
T ss_pred Eeeee------------------ccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCc-----ccceeeeecccCCC
Confidence 11110 00234467899999999888876 48999999996421 011111111
Q ss_pred -----cCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEE-EEeCCCcEEEEeCCCCCCCccccccccc
Q 000251 467 -----SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIV-TCSRDGSAIIWIPRSRRSHPKAARWTQA 540 (1784)
Q Consensus 467 -----~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LV-SgS~DGtIrIWDl~t~~~~~~~~~w~~~ 540 (1784)
........++.|+|++ ++++ +.-....|.+|++...... ...
T Consensus 135 g~~~~rq~~~h~H~v~~~pdg--------------------------~~v~v~dlG~D~v~~~~~~~~~~~-----l~~- 182 (345)
T PF10282_consen 135 GPNPDRQEGPHPHQVVFSPDG--------------------------RFVYVPDLGADRVYVYDIDDDTGK-----LTP- 182 (345)
T ss_dssp ESSTTTTSSTCEEEEEE-TTS--------------------------SEEEEEETTTTEEEEEEE-TTS-T-----EEE-
T ss_pred CCcccccccccceeEEECCCC--------------------------CEEEEEecCCCEEEEEEEeCCCce-----EEE-
Confidence 1123345678888886 4444 4444567889888752210 000
Q ss_pred ccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEECC--CCce--EEEEec----C--C
Q 000251 541 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAA--DGSL--VHSLTG----H--T 609 (1784)
Q Consensus 541 ~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs-~DGsI~VWDl~--tgkl--v~~L~g----H--~ 609 (1784)
..............++|+|+|+++++.. .++.|.++++. ++.+ +..+.. . .
T Consensus 183 ------------------~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 183 ------------------VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE 244 (345)
T ss_dssp ------------------EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred ------------------eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence 0001123445678999999999886654 57789999988 4533 223321 1 1
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCC--CCc--eEEEEeccCcceEEEEEcCCCCEEEEEe-CCCeEEEEEC--C
Q 000251 610 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW--EGI--PIRIYEISRFRLVDGKFSPDGASIILSD-DVGQLYILNT--G 682 (1784)
Q Consensus 610 ~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~--tG~--~l~tl~~~~~~ItslafSPDGk~LAsgs-~DG~I~IWdl--~ 682 (1784)
.....|+++|++..++++....+.|.+|++. +|. .+..+.........++|+|+|++|+++. .++.|.+|++ .
T Consensus 245 ~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 245 NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence 2577899999665666666678899999993 343 3344444344578999999999999886 5678998876 4
Q ss_pred CCcc
Q 000251 683 QGES 686 (1784)
Q Consensus 683 sGe~ 686 (1784)
+|..
T Consensus 325 tG~l 328 (345)
T PF10282_consen 325 TGKL 328 (345)
T ss_dssp TTEE
T ss_pred CCcE
Confidence 5543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.8e-09 Score=124.67 Aligned_cols=175 Identities=18% Similarity=0.249 Sum_probs=136.4
Q ss_pred EEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECC-------CCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCE
Q 000251 263 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME-------TAYCLASCRGHEGDITDLAVSSNNALVASASNDCI 335 (1784)
Q Consensus 263 l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~-------Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGt 335 (1784)
+..+.||+..|.+++--.+.+-+++++.|.+|++|.+. |..+..++..|..+|.++.|-.+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 45688999999999888888899999999999999984 345778888999999999999999888875 788
Q ss_pred EEEEECCCCCeeEEec--CCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCC
Q 000251 336 IRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 413 (1784)
Q Consensus 336 IrVWDl~tgk~i~~L~--gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~ 413 (1784)
|.+||.--|+++..+. ...+.+..+...++-.....++.++...+|+++|.+.......+.+..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn-------------- 871 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN-------------- 871 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEecc--------------
Confidence 9999988887776432 223445555555552222233344788999999999988777765422
Q ss_pred CCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCC
Q 000251 414 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTD 454 (1784)
Q Consensus 414 s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~ 454 (1784)
..+.+..+.+++..+.|+++++|-.+|.|.+.|.+++...
T Consensus 872 -a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 872 -APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred -CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCcee
Confidence 1234566899999999999999999999999999887543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-07 Score=116.11 Aligned_cols=292 Identities=14% Similarity=0.171 Sum_probs=198.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCC---------------eeEEecCCCCceEEEEecCCCCccEEEEEE
Q 000251 311 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL---------------PISVLRGHTAAVTAIAFSPRPGSVYQLLSS 375 (1784)
Q Consensus 311 H~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk---------------~i~~L~gH~~~VtsLafSPdg~~~~~LaSg 375 (1784)
......|++|+....+||+|+.||.++|..+.+.. .-+++.||.+.|.-+.|..... .|-+.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q---KLTtS 89 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ---KLTTS 89 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc---ccccc
Confidence 34567899999999999999999999999876432 1245789999999999998876 89999
Q ss_pred eCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCC
Q 000251 376 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDD 455 (1784)
Q Consensus 376 s~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~ 455 (1784)
..+|.|.+|-+-.|.....+.. ......|.+++|+.+|..|+....||.|.|=.+......
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiN------------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIw- 150 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMIN------------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIW- 150 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhh------------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceec-
Confidence 9999999999988876655422 124566899999999999999999998887766432111
Q ss_pred CCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccc
Q 000251 456 SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAA 535 (1784)
Q Consensus 456 s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~ 535 (1784)
++. +. ......+.|+++. ..++.+-..|.+.++|...
T Consensus 151 ----gKe---Lk--g~~l~hv~ws~D~--------------------------~~~Lf~~ange~hlydnqg-------- 187 (1189)
T KOG2041|consen 151 ----GKE---LK--GQLLAHVLWSEDL--------------------------EQALFKKANGETHLYDNQG-------- 187 (1189)
T ss_pred ----chh---cc--hheccceeecccH--------------------------HHHHhhhcCCcEEEecccc--------
Confidence 111 11 1123367788774 4555566678888888663
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEE--------cCCCCEEEEEecCCeEEEEECCCC-ceEEEEe
Q 000251 536 RWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW--------SLDNRFVLAAIMDCRICVWNAADG-SLVHSLT 606 (1784)
Q Consensus 536 ~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf--------SPDG~~LaSgs~DGsI~VWDl~tg-klv~~L~ 606 (1784)
.+...++..... .+. ..+......|..+.| -||-..|+++...|.+.|..-.+. .++-.-.
T Consensus 188 nF~~Kl~~~c~V--------n~t--g~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt 257 (1189)
T KOG2041|consen 188 NFERKLEKDCEV--------NGT--GIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT 257 (1189)
T ss_pred cHHHhhhhceEE--------eee--eeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec
Confidence 111111110000 000 000011112333333 257888999999999888765443 3333222
Q ss_pred cCCCCeEEEEEecCCCcEEEEEeCCC---------cEEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEE
Q 000251 607 GHTESTYVLDVHPFNPRIAMSAGYDG---------KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLY 677 (1784)
Q Consensus 607 gH~~~VtsLafSPdd~~lLaSgs~DG---------~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~ 677 (1784)
| -.|..+.|++ ++.+|+.+|.|. .|.++.. -|..+.+++.....|+.++|-..|-.+|.+- |+.|+
T Consensus 258 g--m~~vgakWnh-~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiy 332 (1189)
T KOG2041|consen 258 G--MKIVGAKWNH-NGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIY 332 (1189)
T ss_pred c--cEeecceecC-CCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEe-cceEE
Confidence 2 4578899999 777888777542 5666654 6888999998888999999998888888765 47888
Q ss_pred EEECC
Q 000251 678 ILNTG 682 (1784)
Q Consensus 678 IWdl~ 682 (1784)
+=++.
T Consensus 333 fanIR 337 (1189)
T KOG2041|consen 333 FANIR 337 (1189)
T ss_pred EEeec
Confidence 77764
|
|
| >KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.4e-10 Score=141.05 Aligned_cols=105 Identities=21% Similarity=0.309 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCC
Q 000251 1674 KLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRN 1753 (1784)
Q Consensus 1674 kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~ 1753 (1784)
++.+.+..++...+.|.++|+|..|+...++|+||.+|.+||||.||+.||.+++|..++.|+.|+..||.||+-||+++
T Consensus 606 ~~~s~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~ 685 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSD 685 (720)
T ss_pred hhhHHHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCcc
Confidence 46666777777778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCc
Q 000251 1754 TDLSTKIKRLSDLVTRTLSSLKAPQ 1778 (1784)
Q Consensus 1754 s~i~~~a~~l~~~~~~~i~~~~~~~ 1778 (1784)
+.++++|..|+++|..+++.+....
T Consensus 686 ~~y~k~~~~le~~~~~k~~~~i~~~ 710 (720)
T KOG1472|consen 686 TQYYKCAQALEKFFLFKLNELILRV 710 (720)
T ss_pred chheecccchhhhhcchhhhhhhhh
Confidence 9999999999999999998775433
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.4e-06 Score=98.20 Aligned_cols=142 Identities=15% Similarity=0.117 Sum_probs=113.9
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEecCC-eEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 000251 564 LPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 642 (1784)
Q Consensus 564 ~~h~~~VtsVafSPDG~~LaSgs~DG-sI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG 642 (1784)
.++...|.-..+.-++.-++.|..|| .|-|+|..+++. ..+...-+.|.++..+| +++.++.+.....|.+.|+.+|
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididng 433 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNG 433 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCC
Confidence 45666788888888888999999999 899999987754 45556677899999999 7777888888888999999999
Q ss_pred ceEEEEeccCcceEEEEEcCCCCEEEEEeCCC----eEEEEECCCCccccc-----cccceeecCCCcceEEcc
Q 000251 643 IPIRIYEISRFRLVDGKFSPDGASIILSDDVG----QLYILNTGQGESQKD-----AKYDQFFLGDYRPLVQDT 707 (1784)
Q Consensus 643 ~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG----~I~IWdl~sGe~~~~-----~~~~~~fs~D~r~Lv~d~ 707 (1784)
.....-+...+-|+.+.|+|++++||.+--+| .|+++|+..++.... ..+..+|-+|++.|..-+
T Consensus 434 nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 434 NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 87665555566799999999999999986655 789999998876542 225568899999887544
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.9e-06 Score=115.27 Aligned_cols=344 Identities=14% Similarity=0.187 Sum_probs=204.9
Q ss_pred CEEEEEECCCCCEE--EEEcCCc--EEEEEECCCCe---EEEEEe-----cCCCCeEEEEEcCCCCEEEEEeCCCEEEEE
Q 000251 272 AVYCAIFDRSGRYV--ITGSDDR--LVKIWSMETAY---CLASCR-----GHEGDITDLAVSSNNALVASASNDCIIRVW 339 (1784)
Q Consensus 272 ~Vt~VaFSPDG~~L--ATGS~DG--tIkIWDl~Tgk---~l~tL~-----gH~~~VtsLafSpDg~lLASGS~DGtIrVW 339 (1784)
.+...+|++....+ +++.... .|.+....... .+..+. ...+.|.++.+.++...|+.+..+|.|.+.
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 46666777655443 3333322 34444433222 333333 245789999999999999999999999999
Q ss_pred ----ECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCC--------------
Q 000251 340 ----RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS-------------- 401 (1784)
Q Consensus 340 ----Dl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~-------------- 401 (1784)
+..+.. +.....-...|.+++||||+. +|+.++.+|+|.+..- +...+....+....
T Consensus 103 ~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~E---lla~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkK 177 (928)
T PF04762_consen 103 REDPDPDEDE-IEIVGSVDSGILAASWSPDEE---LLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKK 177 (928)
T ss_pred EccCCCCCce-eEEEEEEcCcEEEEEECCCcC---EEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcc
Confidence 543332 222233457899999999997 8888888888887642 11111111111000
Q ss_pred -C---cccCCCC-----CCC------CCCCCCCCceEEEEECCCCCEEEEeeC---C---ceEEEEcCCCCCCCCCCCCC
Q 000251 402 -D---AVAGRNM-----APS------SSAGPQSHQIFCCAFNANGTVFVTGSS---D---TLARVWNACKPNTDDSDQPN 460 (1784)
Q Consensus 402 -~---~~~g~~~-----~~~------~s~~~h~~~V~sLafSpdG~~LasGs~---D---G~IrVWDl~tg~~~~s~~~~ 460 (1784)
. ...|+.. .+. .... ....-..|+|-.||.+||+.+- . ..|+||+-. |.
T Consensus 178 eTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~-------- 247 (928)
T PF04762_consen 178 ETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE-------- 247 (928)
T ss_pred cCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce--------
Confidence 0 0001110 000 0111 3445678999999999999875 2 579999874 21
Q ss_pred cceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeC---CCcEEEEeCCCCCCCcccccc
Q 000251 461 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR---DGSAIIWIPRSRRSHPKAARW 537 (1784)
Q Consensus 461 ~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~---DGtIrIWDl~t~~~~~~~~~w 537 (1784)
.......-.+--.+++|.|.| +.|++.-. ...|.+|.-...+ ++
T Consensus 248 -L~stSE~v~gLe~~l~WrPsG--------------------------~lIA~~q~~~~~~~VvFfErNGLr-hg----- 294 (928)
T PF04762_consen 248 -LQSTSEPVDGLEGALSWRPSG--------------------------NLIASSQRLPDRHDVVFFERNGLR-HG----- 294 (928)
T ss_pred -EEeccccCCCccCCccCCCCC--------------------------CEEEEEEEcCCCcEEEEEecCCcE-ee-----
Confidence 111222222333467888876 45655543 2445555433211 11
Q ss_pred cccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCc--eEEEEecC-CCCeEE
Q 000251 538 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGS--LVHSLTGH-TESTYV 614 (1784)
Q Consensus 538 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgk--lv~~L~gH-~~~Vts 614 (1784)
....+.......|..+.|++|+..||....|. |.+|-..+.. +.+.+... ...+..
T Consensus 295 --------------------eF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~ 353 (928)
T PF04762_consen 295 --------------------EFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNF 353 (928)
T ss_pred --------------------eEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCc
Confidence 11111123445689999999999999987665 9999988764 33344322 233455
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeC----CCCc--------eEEEEe-----------------------ccCcceEEEE
Q 000251 615 LDVHPFNPRIAMSAGYDGKTIVWDI----WEGI--------PIRIYE-----------------------ISRFRLVDGK 659 (1784)
Q Consensus 615 LafSPdd~~lLaSgs~DG~IrIWDl----~tG~--------~l~tl~-----------------------~~~~~Itsla 659 (1784)
+.|+|..+..|.....+|.+.+++. ..+. .+..+. .-..+|.+++
T Consensus 354 ~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~va 433 (928)
T PF04762_consen 354 VKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVA 433 (928)
T ss_pred eEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEE
Confidence 9999987777777777677655432 2110 111111 1245789999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCC
Q 000251 660 FSPDGASIILSDDVGQLYILNTGQG 684 (1784)
Q Consensus 660 fSPDGk~LAsgs~DG~I~IWdl~sG 684 (1784)
|++++..+|+-..||.|.+|.....
T Consensus 434 f~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 434 FSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred EeCCCCeEEEEECCCCEEEEEecCC
Confidence 9999998999999999999986543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.1e-07 Score=113.19 Aligned_cols=242 Identities=11% Similarity=0.052 Sum_probs=144.0
Q ss_pred cEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE---EEeCC--CEEEEEECCCCCeeEEecCCCCceEEEEecCCC
Q 000251 292 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVA---SASND--CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRP 366 (1784)
Q Consensus 292 GtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLA---SGS~D--GtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg 366 (1784)
+.|.+.|...+.. +.+......+.+-+|+|||+.++ +...+ ..|.+.++.+|+.... ....+.....+|+|||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCC
Confidence 4677888765543 44554566678889999997532 33333 4688889887764433 3344556678999999
Q ss_pred CccEEEEEEe-CCC----cEEEEecCCCcc--cceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEee-
Q 000251 367 GSVYQLLSSS-DDG----TCRIWDARYSQF--SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS- 438 (1784)
Q Consensus 367 ~~~~~LaSgs-~DG----tIrIWDl~tg~~--l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs- 438 (1784)
+ .|+..+ .+| .+.+|++..+.. ...+. ..........+|+|||+.|+..+
T Consensus 243 ~---~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-------------------~~~~~~~~~p~wSPDG~~Laf~s~ 300 (428)
T PRK01029 243 K---LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-------------------NEAFGTQGNPSFSPDGTRLVFVSN 300 (428)
T ss_pred C---EEEEEECCCCCcceeEEEeecccCCCCcceEee-------------------cCCCCCcCCeEECCCCCEEEEEEC
Confidence 7 555433 233 344466654321 11110 01112235679999999877665
Q ss_pred CCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeC-C
Q 000251 439 SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR-D 517 (1784)
Q Consensus 439 ~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~-D 517 (1784)
.+|...||.+... ........+..+...+....|+|+| +.|+..+. +
T Consensus 301 ~~g~~~ly~~~~~------~~g~~~~~lt~~~~~~~~p~wSPDG--------------------------~~Laf~~~~~ 348 (428)
T PRK01029 301 KDGRPRIYIMQID------PEGQSPRLLTKKYRNSSCPAWSPDG--------------------------KKIAFCSVIK 348 (428)
T ss_pred CCCCceEEEEECc------ccccceEEeccCCCCccceeECCCC--------------------------CEEEEEEcCC
Confidence 4565555543210 0011233444455567788999997 45554433 2
Q ss_pred --CcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEec---CCeEE
Q 000251 518 --GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM---DCRIC 592 (1784)
Q Consensus 518 --GtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~---DGsI~ 592 (1784)
..|.+||+.+++. ..+......+....|+|||++|+.... ...|+
T Consensus 349 g~~~I~v~dl~~g~~------------------------------~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 349 GVRQICVYDLATGRD------------------------------YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred CCcEEEEEECCCCCe------------------------------EEccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 3688888875331 111112234566899999998876443 35699
Q ss_pred EEECCCCceEEEEecCCCCeEEEEEecC
Q 000251 593 VWNAADGSLVHSLTGHTESTYVLDVHPF 620 (1784)
Q Consensus 593 VWDl~tgklv~~L~gH~~~VtsLafSPd 620 (1784)
+|++.+++...... ..+.+...+|+|.
T Consensus 399 ~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~ 425 (428)
T PRK01029 399 LISLITKKTRKIVI-GSGEKRFPSWGAF 425 (428)
T ss_pred EEECCCCCEEEeec-CCCcccCceecCC
Confidence 99998877654443 4455777888883
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-07 Score=115.49 Aligned_cols=230 Identities=15% Similarity=0.147 Sum_probs=157.5
Q ss_pred EEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEE------C--------------C
Q 000251 370 YQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF------N--------------A 429 (1784)
Q Consensus 370 ~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLaf------S--------------p 429 (1784)
.++|....||.+++|+...+++...+.- .. . ..+..++..| + .
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p-~~--~--------------~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~ 68 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAP-IA--S--------------LSGTCTYTKWGLSADYSPMKWLSLEKAKKASL 68 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeecc-ch--h--------------ccCcceeEEEEEEeccchHHHHhHHHHhhccC
Confidence 3899999999999999998886555421 10 0 1111122222 2 2
Q ss_pred CCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCC
Q 000251 430 NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 509 (1784)
Q Consensus 430 dG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~ 509 (1784)
+...|+-|...|.|.+|++..+.. .....-..|.+.|+++.++... .
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~i-------t~~~st~~h~~~v~~~~~~~~~--------------------------~ 115 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEI-------TAKLSTDKHYGNVNEILDAQRL--------------------------G 115 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeE-------EEEEecCCCCCcceeeeccccc--------------------------C
Confidence 345788888999999999965421 1122235799999999987654 5
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCC
Q 000251 510 NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC 589 (1784)
Q Consensus 510 ~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DG 589 (1784)
.|.+++.|+.+..|+...... ..........+.+++.+|||..+++|+ +
T Consensus 116 ciyS~~ad~~v~~~~~~~~~~-----------------------------~~~~~~~~~~~~sl~is~D~~~l~~as--~ 164 (541)
T KOG4547|consen 116 CIYSVGADLKVVYILEKEKVI-----------------------------IRIWKEQKPLVSSLCISPDGKILLTAS--R 164 (541)
T ss_pred ceEecCCceeEEEEeccccee-----------------------------eeeeccCCCccceEEEcCCCCEEEecc--c
Confidence 899999999999999886331 222233445688999999999999987 6
Q ss_pred eEEEEECCCCceEEEEecCCCCeEEEEEecC-----CCcEEEEEeCCCcEEEEeCCC----CceEEEEeccCcceEE-EE
Q 000251 590 RICVWNAADGSLVHSLTGHTESTYVLDVHPF-----NPRIAMSAGYDGKTIVWDIWE----GIPIRIYEISRFRLVD-GK 659 (1784)
Q Consensus 590 sI~VWDl~tgklv~~L~gH~~~VtsLafSPd-----d~~lLaSgs~DG~IrIWDl~t----G~~l~tl~~~~~~Its-la 659 (1784)
.|++||+.+++.+..|.||.++|.++.|-.. +.++|.++..+.-|.+|-+.. +.....+...+.+++. --
T Consensus 165 ~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv~~ds~ 244 (541)
T KOG4547|consen 165 QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPVTSDSG 244 (541)
T ss_pred eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccCCCCeEeccc
Confidence 8999999999999999999999999999774 346676777777888997654 2334444444444442 23
Q ss_pred EcCCCC--E-EEEEeCCCeEEEEE
Q 000251 660 FSPDGA--S-IILSDDVGQLYILN 680 (1784)
Q Consensus 660 fSPDGk--~-LAsgs~DG~I~IWd 680 (1784)
...|+. + ||+....|.+..+.
T Consensus 245 ~~ed~~~~l~lAst~~~g~v~~~~ 268 (541)
T KOG4547|consen 245 LLEDGTIPLVLASTLIPGIVHLKL 268 (541)
T ss_pred cccccccceEEeeeccCceeeecc
Confidence 344444 3 33445555555444
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=124.43 Aligned_cols=288 Identities=19% Similarity=0.206 Sum_probs=187.9
Q ss_pred CCCEEEEEECCCCCEEEEEcCCcEEEEEECCC-CeEEEEEe-cCCCCeEEEEEcCCCC---EEEEEeCCCEEEEEECCCC
Q 000251 270 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMET-AYCLASCR-GHEGDITDLAVSSNNA---LVASASNDCIIRVWRLPDG 344 (1784)
Q Consensus 270 ~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~T-gk~l~tL~-gH~~~VtsLafSpDg~---lLASGS~DGtIrVWDl~tg 344 (1784)
.+.+.++.++|.|+-+|+++.-|. .|-|+.. +..-.-+. ...-.|-.+.|++... .+++.+ ...-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC-cchhhhhhhhcC
Confidence 356888999999999999998774 4555543 33333232 1123467788887543 445444 445678987532
Q ss_pred ---CeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCc
Q 000251 345 ---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 421 (1784)
Q Consensus 345 ---k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~ 421 (1784)
..-..+.+|+..|+.+.|.|... ..|++++.|-.|..||++........ .......
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~p--dVlatcsvdt~vh~wd~rSp~~p~ys-------------------~~~w~s~ 160 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHP--DVLATCSVDTYVHAWDMRSPHRPFYS-------------------TSSWRSA 160 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCC--cceeeccccccceeeeccCCCcceee-------------------eeccccc
Confidence 34456789999999999999866 48999999999999999876532211 1122334
Q ss_pred eEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCcc
Q 000251 422 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 501 (1784)
Q Consensus 422 V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~ 501 (1784)
...++|+-....+.+.+....|++||++.+ ..++..+++|...|+.+.|..-.
T Consensus 161 asqVkwnyk~p~vlasshg~~i~vwd~r~g--------s~pl~s~K~~vs~vn~~~fnr~~------------------- 213 (1081)
T KOG0309|consen 161 ASQVKWNYKDPNVLASSHGNDIFVWDLRKG--------STPLCSLKGHVSSVNSIDFNRFK------------------- 213 (1081)
T ss_pred CceeeecccCcchhhhccCCceEEEeccCC--------CcceEEecccceeeehHHHhhhh-------------------
Confidence 556788874444555556778999999875 34677888899999998887432
Q ss_pred ccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCE
Q 000251 502 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF 581 (1784)
Q Consensus 502 ~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~ 581 (1784)
...+.+++.||+|+.||...... .| ........+|..-.+-|-|.-
T Consensus 214 ------~s~~~s~~~d~tvkfw~y~kSt~-----e~-----------------------~~~vtt~~piw~~r~~Pfg~g 259 (1081)
T KOG0309|consen 214 ------YSEIMSSSNDGTVKFWDYSKSTT-----ES-----------------------KRTVTTNFPIWRGRYLPFGEG 259 (1081)
T ss_pred ------hhhhcccCCCCceeeeccccccc-----cc-----------------------ceeccccCcceeccccccCce
Confidence 35789999999999999874221 11 111122233333333333221
Q ss_pred EEE-----------EecCCeEEEEECCC-CceEEEEecCCCCeEEEEEecC---------CCcEEEEEeCCCcEEEEeCC
Q 000251 582 VLA-----------AIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPF---------NPRIAMSAGYDGKTIVWDIW 640 (1784)
Q Consensus 582 LaS-----------gs~DGsI~VWDl~t-gklv~~L~gH~~~VtsLafSPd---------d~~lLaSgs~DG~IrIWDl~ 640 (1784)
.++ ---+.....|+..+ .+++++|.||.+.|....|-.. ....|+|-+.|..+++|-+.
T Consensus 260 ~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 260 YCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 111 11122333455544 4689999999998877666321 12478899999999999885
Q ss_pred C
Q 000251 641 E 641 (1784)
Q Consensus 641 t 641 (1784)
+
T Consensus 340 ~ 340 (1081)
T KOG0309|consen 340 S 340 (1081)
T ss_pred H
Confidence 4
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.2e-06 Score=98.93 Aligned_cols=171 Identities=16% Similarity=0.224 Sum_probs=122.9
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCC-cEEEEeCCCCceEEEEeccCcceE
Q 000251 578 DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG-KTIVWDIWEGIPIRIYEISRFRLV 656 (1784)
Q Consensus 578 DG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG-~IrIWDl~tG~~l~tl~~~~~~It 656 (1784)
+|.+++..+. |...|.+...+-.++. +|.+.|.-..+.- ++.-++.|..|| .|-|+|..+++. +.+...-+.|.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~ 405 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIE 405 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceE-EEeeCCccceE
Confidence 6778887765 6777777766655543 5677788777776 444667788899 899999976654 44555778999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCccccccccceeecCCCcceEEccCCceeecccccccCcCCCCCcccCCCCCC
Q 000251 657 DGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIP 736 (1784)
Q Consensus 657 slafSPDGk~LAsgs~DG~I~IWdl~sGe~~~~~~~~~~fs~D~r~Lv~d~~g~vld~~tql~phl~~l~~~L~D~~~~p 736 (1784)
+++.+|||++++++.....|++.|+.+|.... +|
T Consensus 406 av~vs~dGK~~vvaNdr~el~vididngnv~~-----------------------id----------------------- 439 (668)
T COG4946 406 AVKVSPDGKKVVVANDRFELWVIDIDNGNVRL-----------------------ID----------------------- 439 (668)
T ss_pred EEEEcCCCcEEEEEcCceEEEEEEecCCCeeE-----------------------ec-----------------------
Confidence 99999999999999999999999998874321 11
Q ss_pred CCCcchhhhhcccccccceEECCCCCeEEEeeCCCC-CCceEeecCCCcccccCCCc-cccceeeeCCCCCccc
Q 000251 737 YPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSL-DQGYQLQPLADLDVMIDPLP-EFIDVMDWEPENEVQS 808 (1784)
Q Consensus 737 ~p~~~Q~l~~~rr~~v~~iAfSPDG~~LAvg~d~s~-~~~v~lw~l~~~~~li~plp-~~i~~~~wsPDg~~ls 808 (1784)
+.+..-++.++|+|+++++|.+-..+. .+.+.+.++..++.+.-..| ....+.+|-||+++|-
T Consensus 440 ---------kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 440 ---------KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred ---------ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEE
Confidence 000112457889999999999944333 46788999877664433333 4455678889988753
|
|
| >cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.4e-09 Score=106.58 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCc
Q 000251 1711 FPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNT 1754 (1784)
Q Consensus 1711 i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s 1754 (1784)
+=+||||+||++||+|+||.++++|++||++||+||++||.++.
T Consensus 61 ~~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~dr 104 (119)
T cd05491 61 KFYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRER 104 (119)
T ss_pred eEeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 34699999999999999999999999999999999999998854
|
TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.4e-08 Score=111.55 Aligned_cols=309 Identities=13% Similarity=0.217 Sum_probs=184.5
Q ss_pred CCCEEEEEECCCCCEEEEEcCCcEEEEEECC----CCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Q 000251 270 RNAVYCAIFDRSGRYVITGSDDRLVKIWSME----TAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 345 (1784)
Q Consensus 270 ~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~----Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk 345 (1784)
..+++++.+.+..+.|+.|-..|+|.-+.+. ....++....|...|..+.|+-....+++.+.|..+.--..+.|.
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~ 147 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN 147 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence 4679999999999999999999999998764 344555566899999999999989999999999877655556655
Q ss_pred eeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEE
Q 000251 346 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 425 (1784)
Q Consensus 346 ~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sL 425 (1784)
.+..+.- ....+++.|.- .+...|...|.|..-.+....+ .+.....+|...+.++
T Consensus 148 ~lg~Y~~-~~~~t~~~~d~-----~~~fvGd~~gqvt~lr~~~~~~------------------~~i~~~~~h~~~~~~l 203 (404)
T KOG1409|consen 148 RLGGYNF-ETPASALQFDA-----LYAFVGDHSGQITMLKLEQNGC------------------QLITTFNGHTGEVTCL 203 (404)
T ss_pred cccceEe-eccCCCCceee-----EEEEecccccceEEEEEeecCC------------------ceEEEEcCcccceEEE
Confidence 4432210 00001111100 0233444445555544332221 1122345788999999
Q ss_pred EECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCcccccc
Q 000251 426 AFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 505 (1784)
Q Consensus 426 afSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~ 505 (1784)
+|.+....|.+|..|..|.+||+--. ......+.+|.+.|..+...+..
T Consensus 204 ~Wd~~~~~LfSg~~d~~vi~wdigg~--------~g~~~el~gh~~kV~~l~~~~~t----------------------- 252 (404)
T KOG1409|consen 204 KWDPGQRLLFSGASDHSVIMWDIGGR--------KGTAYELQGHNDKVQALSYAQHT----------------------- 252 (404)
T ss_pred EEcCCCcEEEeccccCceEEEeccCC--------cceeeeeccchhhhhhhhhhhhh-----------------------
Confidence 99999999999999999999999431 23456778999999888776543
Q ss_pred ccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCC------CCCCCCCceeccCCC-CCeeEEEEcCC
Q 000251 506 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP------QPPRGGPRQRILPTP-RGVNMIVWSLD 578 (1784)
Q Consensus 506 ~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~------~~~~~~~~~~l~~h~-~~VtsVafSPD 578 (1784)
..+++++.||.|.+|++...+. ....|........-..+... .....+..+....+- ..|...+-+..
T Consensus 253 ---~~l~S~~edg~i~~w~mn~~r~--etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~ 327 (404)
T KOG1409|consen 253 ---RQLISCGEDGGIVVWNMNVKRV--ETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNR 327 (404)
T ss_pred ---eeeeeccCCCeEEEEeccceee--cCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCc
Confidence 5899999999999999986442 12223221111000000000 000000111111111 11222222222
Q ss_pred CCEEEEEecCCeEEEEECCC-------CceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000251 579 NRFVLAAIMDCRICVWNAAD-------GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 640 (1784)
Q Consensus 579 G~~LaSgs~DGsI~VWDl~t-------gklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 640 (1784)
. ...+-+..-.+++-|.-. ..++..+..-...|+.+.+-. .-.+|+|+|.|..|+|||+.
T Consensus 328 ~-~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqe-tlglLvTsG~~Rvi~iwd~~ 394 (404)
T KOG1409|consen 328 S-SYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE-TLGLLVTSGTDRVIKIWDVR 394 (404)
T ss_pred c-ccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhh-hccceeecCCceEEEEEech
Confidence 2 222222233455544321 223333332234588888866 44577899999999999984
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-07 Score=116.13 Aligned_cols=169 Identities=14% Similarity=0.160 Sum_probs=137.7
Q ss_pred CCCCCEEEEEcCCcEEEEEECCCCeEEEEEec---CCCCeEEEEEc--------------------CCCCEEEEEeCCCE
Q 000251 279 DRSGRYVITGSDDRLVKIWSMETAYCLASCRG---HEGDITDLAVS--------------------SNNALVASASNDCI 335 (1784)
Q Consensus 279 SPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~g---H~~~VtsLafS--------------------pDg~lLASGS~DGt 335 (1784)
.|.+.++|....||.++||+..++++...+.. -.+..++..|. .|-..||-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 45678999999999999999999988777652 23344444441 23447888889999
Q ss_pred EEEEECCCCCeeEEec--CCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCC
Q 000251 336 IRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 413 (1784)
Q Consensus 336 IrVWDl~tgk~i~~L~--gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~ 413 (1784)
|.+|++..|+....+. .|.+.|.++.++.+-. .|.+++.|+.+..|+...........
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~---ciyS~~ad~~v~~~~~~~~~~~~~~~----------------- 141 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG---CIYSVGADLKVVYILEKEKVIIRIWK----------------- 141 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccC---ceEecCCceeEEEEecccceeeeeec-----------------
Confidence 9999999998887775 6999999999998876 89999999999999998887655543
Q ss_pred CCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccC
Q 000251 414 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 481 (1784)
Q Consensus 414 s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpd 481 (1784)
.....+.+++++|||..+++++ +.|.+|++.+ .+.+..+.||.++|.+++|.-.
T Consensus 142 ---~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~---------kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 142 ---EQKPLVSSLCISPDGKILLTAS--RQIKVLDIET---------KEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred ---cCCCccceEEEcCCCCEEEecc--ceEEEEEccC---------ceEEEEecCCCcceEEEEEEEe
Confidence 2344588999999999999886 6799999976 5678899999999999999754
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.2e-07 Score=104.12 Aligned_cols=278 Identities=15% Similarity=0.154 Sum_probs=178.5
Q ss_pred CCEEEEEECCCCCeeE--Ee-cCCCCceEEEEecCC--CCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCC
Q 000251 333 DCIIRVWRLPDGLPIS--VL-RGHTAAVTAIAFSPR--PGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 407 (1784)
Q Consensus 333 DGtIrVWDl~tgk~i~--~L-~gH~~~VtsLafSPd--g~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~ 407 (1784)
-|.+.+|++...+.+. ++ ...+..+..+.|+-- ++. ..|+-+...|.|.++..........+.
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~-~~l~~a~a~G~i~~~r~~~~~ss~~L~----------- 112 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGD-FNLLDAHARGQIQLYRNDEDESSVHLR----------- 112 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCcc-ceeeeccccceEEEEeeccceeeeeec-----------
Confidence 3678888887654433 12 223455666777642 222 267778888999998765433222211
Q ss_pred CCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccc
Q 000251 408 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 487 (1784)
Q Consensus 408 ~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~ 487 (1784)
+.....-......++.|++.|..++++..+|.+.+-+.... ....++..+.|.-.++...|+-..
T Consensus 113 ---~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~-------~le~vq~wk~He~E~Wta~f~~~~----- 177 (339)
T KOG0280|consen 113 ---GLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEM-------VLEKVQTWKVHEFEAWTAKFSDKE----- 177 (339)
T ss_pred ---ccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEeccee-------eeeecccccccceeeeeeecccCC-----
Confidence 00011111113568889999999999999999985554321 133445778899888888887543
Q ss_pred cccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCC
Q 000251 488 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 567 (1784)
Q Consensus 488 ~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~ 567 (1784)
++.+.+|+.||.+..||++... ...| .....|.
T Consensus 178 --------------------pnlvytGgDD~~l~~~D~R~p~----~~i~-----------------------~n~kvH~ 210 (339)
T KOG0280|consen 178 --------------------PNLVYTGGDDGSLSCWDIRIPK----TFIW-----------------------HNSKVHT 210 (339)
T ss_pred --------------------CceEEecCCCceEEEEEecCCc----ceee-----------------------ecceeee
Confidence 4789999999999999998311 1111 1234577
Q ss_pred CCeeEEEEcC-CCCEEEEEecCCeEEEEECCC-CceEEEEecCCCCeEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCc-
Q 000251 568 RGVNMIVWSL-DNRFVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNP-RIAMSAGYDGKTIVWDIWEGI- 643 (1784)
Q Consensus 568 ~~VtsVafSP-DG~~LaSgs~DGsI~VWDl~t-gklv~~L~gH~~~VtsLafSPdd~-~lLaSgs~DG~IrIWDl~tG~- 643 (1784)
.+|.+|.-+| .+.+|++|+.|-.|++||.++ ++++..-. -.+.|+.+.++|... ++|+++-+.| .+|-++..+.
T Consensus 211 ~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~ 288 (339)
T KOG0280|consen 211 SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVL 288 (339)
T ss_pred cceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEeccccc
Confidence 8899988775 678999999999999999985 66665433 347799999999654 3444444444 7777776543
Q ss_pred ----eEEEEeccCcceEEEEEcCCCCEEEEEe-CCCeEE-EEECCCCcc
Q 000251 644 ----PIRIYEISRFRLVDGKFSPDGASIILSD-DVGQLY-ILNTGQGES 686 (1784)
Q Consensus 644 ----~l~tl~~~~~~ItslafSPDGk~LAsgs-~DG~I~-IWdl~sGe~ 686 (1784)
.+.....|.+-.....|......||+++ .|..|+ +|-..+++.
T Consensus 289 e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 289 EFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGEP 337 (339)
T ss_pred chheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCCc
Confidence 3334445555555666644445677753 455644 777666543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.5e-06 Score=105.88 Aligned_cols=267 Identities=14% Similarity=0.101 Sum_probs=159.3
Q ss_pred CCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceE--
Q 000251 281 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVT-- 358 (1784)
Q Consensus 281 DG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~Vt-- 358 (1784)
++..++.++.+|.|..+|..+|+.+...... +.+.+.... .+..++.++.+|.|..||..+|+.+..+......+.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 4677888889999999999999988765532 223221111 345677778899999999999998777654322111
Q ss_pred ---EEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCce-EEEEECCCCCEE
Q 000251 359 ---AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI-FCCAFNANGTVF 434 (1784)
Q Consensus 359 ---sLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V-~sLafSpdG~~L 434 (1784)
+..+. + . .++.+..+|.|..+|+.+|+.+.......+.. .. .. .....+ .+..+ .+..+
T Consensus 182 ~~~sp~~~-~-~---~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g----~~--~~----~~~~~~~~~p~~--~~~~v 244 (377)
T TIGR03300 182 GSASPVIA-D-G---GVLVGFAGGKLVALDLQTGQPLWEQRVALPKG----RT--EL----ERLVDVDGDPVV--DGGQV 244 (377)
T ss_pred CCCCCEEE-C-C---EEEEECCCCEEEEEEccCCCEeeeeccccCCC----CC--ch----hhhhccCCccEE--ECCEE
Confidence 11111 2 2 57788889999999999997654432211100 00 00 000000 01111 24567
Q ss_pred EEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEE
Q 000251 435 VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC 514 (1784)
Q Consensus 435 asGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSg 514 (1784)
++++.+|.++.||..+++ .+.... . ....... ..++.++.+
T Consensus 245 y~~~~~g~l~a~d~~tG~---------~~W~~~-~-~~~~~p~----------------------------~~~~~vyv~ 285 (377)
T TIGR03300 245 YAVSYQGRVAALDLRSGR---------VLWKRD-A-SSYQGPA----------------------------VDDNRLYVT 285 (377)
T ss_pred EEEEcCCEEEEEECCCCc---------EEEeec-c-CCccCce----------------------------EeCCEEEEE
Confidence 778889999999997643 221111 0 0000111 113578888
Q ss_pred eCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEE
Q 000251 515 SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 594 (1784)
Q Consensus 515 S~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VW 594 (1784)
+.+|.+..+|..+++. .|.... + ........+. .+..|++++.+|.|+++
T Consensus 286 ~~~G~l~~~d~~tG~~-----~W~~~~---------------------~--~~~~~ssp~i--~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 286 DADGVVVALDRRSGSE-----LWKNDE---------------------L--KYRQLTAPAV--VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred CCCCeEEEEECCCCcE-----EEcccc---------------------c--cCCccccCEE--ECCEEEEEeCCCEEEEE
Confidence 8999999999987542 222100 0 0001111111 36688899999999999
Q ss_pred ECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 000251 595 NAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 637 (1784)
Q Consensus 595 Dl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIW 637 (1784)
|..+|+.+..+..+...+..--... +++ |+.++.||.|..|
T Consensus 336 d~~tG~~~~~~~~~~~~~~~sp~~~-~~~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 336 SREDGSFVARLKTDGSGIASPPVVV-GDG-LLVQTRDGDLYAF 376 (377)
T ss_pred ECCCCCEEEEEEcCCCccccCCEEE-CCE-EEEEeCCceEEEe
Confidence 9999999999887665433322222 344 5567889988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=9e-08 Score=127.19 Aligned_cols=192 Identities=15% Similarity=0.256 Sum_probs=153.3
Q ss_pred EccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCC
Q 000251 266 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 344 (1784)
Q Consensus 266 L~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~-gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg 344 (1784)
++.|-..|.|+.-+|.-.+-+||+.||.|++|....+..+..++ +....|+.+.|+.+|+.+..+..||.+.+|.+. .
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 45566788999999999999999999999999999998888776 233889999999999999999999999999975 6
Q ss_pred CeeEEecCCCCceEEEEecCCCCccEEEEEEe---CCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCc
Q 000251 345 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS---DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 421 (1784)
Q Consensus 345 k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs---~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~ 421 (1784)
++....+.|........|... .+++++ .++.+.+||..-......+ ...|.+.
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~s-----~~~tag~s~d~~n~~lwDtl~~~~~s~v-------------------~~~H~~g 2338 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIGS-----LLATAGRSSDNRNVCLWDTLLPPMNSLV-------------------HTCHDGG 2338 (2439)
T ss_pred cceeccccCCccccceeeeeh-----hhhccccCCCCCcccchhcccCccccee-------------------eeecCCC
Confidence 777788899999999999873 466654 5689999997533211111 1468889
Q ss_pred eEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCcc
Q 000251 422 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 501 (1784)
Q Consensus 422 V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~ 501 (1784)
++++++.|..++|++|+.+|.|++||++..+ .+..+.. +. .
T Consensus 2339 aT~l~~~P~~qllisggr~G~v~l~D~rqrq---------l~h~~~~---------~~-~-------------------- 2379 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ---------LRHTFQA---------LD-T-------------------- 2379 (2439)
T ss_pred ceEEEEcCcceEEEecCCcCcEEEeehHHHH---------HHHHhhh---------hh-h--------------------
Confidence 9999999999999999999999999996421 2222111 11 0
Q ss_pred ccccccCCeEEEEeCCCcEEEEeCCC
Q 000251 502 KNSWFCHDNIVTCSRDGSAIIWIPRS 527 (1784)
Q Consensus 502 ~~~~~~~~~LVSgS~DGtIrIWDl~t 527 (1784)
..+|++|+..|.|+||++..
T Consensus 2380 ------~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2380 ------REYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred ------hheeeccCcccceEEEEccc
Confidence 26899999999999999885
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-08 Score=124.96 Aligned_cols=202 Identities=18% Similarity=0.285 Sum_probs=141.2
Q ss_pred CCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCccccccccc
Q 000251 411 PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLA 490 (1784)
Q Consensus 411 ~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~ 490 (1784)
....+..+....+|++|+.+.++|++|+..|.|++|++.+|. ......+|...|+.+.-+-+|
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~---------~e~s~ncH~SavT~vePs~dg-------- 1155 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS---------MEESVNCHQSAVTLVEPSVDG-------- 1155 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc---------ccccccccccccccccccCCc--------
Confidence 344556678889999999999999999999999999997753 445678899999998877766
Q ss_pred CCCCCCCCCccccccccCCeEEE-EeCCC-cEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCC
Q 000251 491 DSSKEDSTPKFKNSWFCHDNIVT-CSRDG-SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR 568 (1784)
Q Consensus 491 ~s~~~~~~~~~~~~~~~~~~LVS-gS~DG-tIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~ 568 (1784)
..+++ .+... -..+|++.+ .+++...+ .
T Consensus 1156 ------------------s~~Ltsss~S~PlsaLW~~~s----------------------------~~~~~Hsf----~ 1185 (1516)
T KOG1832|consen 1156 ------------------STQLTSSSSSSPLSALWDASS----------------------------TGGPRHSF----D 1185 (1516)
T ss_pred ------------------ceeeeeccccCchHHHhcccc----------------------------ccCccccc----c
Confidence 33333 33322 466787764 01111111 2
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEE-ec---CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 000251 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TG---HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 644 (1784)
Q Consensus 569 ~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L-~g---H~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~ 644 (1784)
.-.++.|+..-..-+.|+....+.|||+.++..+.++ .+ ..-.-+++.|+|++..+| .|| .+||+...+.
T Consensus 1186 ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl----ndG--vLWDvR~~~a 1259 (1516)
T KOG1832|consen 1186 EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL----NDG--VLWDVRIPEA 1259 (1516)
T ss_pred ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe----eCc--eeeeeccHHH
Confidence 3456778877666666666678999999999877763 22 222336788999655444 465 5799998888
Q ss_pred EEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccc
Q 000251 645 IRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAK 691 (1784)
Q Consensus 645 l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~~~~~~ 691 (1784)
++.|.... .-..-.|+|.|.-++.-+. |||+.+-+.+..++
T Consensus 1260 Ih~FD~ft-~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1260 IHRFDQFT-DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVP 1300 (1516)
T ss_pred Hhhhhhhe-ecccccccCCCceEEeech-----hhhhHHHHHHhcCc
Confidence 88876433 1224589999999998765 89999877766554
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.4e-08 Score=127.98 Aligned_cols=225 Identities=12% Similarity=0.219 Sum_probs=166.6
Q ss_pred CCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCc
Q 000251 324 NALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 403 (1784)
Q Consensus 324 g~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~ 403 (1784)
++.......++...-|..+-+.. .++.+-..|.++.=+|... +.++|+.||.|++|....++.+..+..
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~---~Yltgs~dgsv~~~~w~~~~~v~~~rt------ 2248 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDP---YYLTGSQDGSVRMFEWGHGQQVVCFRT------ 2248 (2439)
T ss_pred cccCCcccCCccccceeccccee--EeecccCceeeecCCCCCc---eEEecCCCceEEEEeccCCCeEEEeec------
Confidence 33444444455555555432221 2333556788888888765 889999999999999988876555432
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcc
Q 000251 404 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 483 (1784)
Q Consensus 404 ~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdgl 483 (1784)
.....|+.+.|+.+|+-+..+..||.+.+|.+. .+.......|......+.|-..
T Consensus 2249 -------------~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~----------pk~~~s~qchnk~~~Df~Fi~s-- 2303 (2439)
T KOG1064|consen 2249 -------------AGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS----------PKPYTSWQCHNKALSDFRFIGS-- 2303 (2439)
T ss_pred -------------cCcchhhhhhhcccCCceeeeccCCceeecccC----------CcceeccccCCccccceeeeeh--
Confidence 123678999999999999999999999999984 3355666778888888887653
Q ss_pred cccccccCCCCCCCCCccccccccCCeEEEE---eCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCc
Q 000251 484 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 560 (1784)
Q Consensus 484 as~~~~~~s~~~~~~~~~~~~~~~~~~LVSg---S~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~ 560 (1784)
.++++ +.++.+.+||.--.. ....+
T Consensus 2304 --------------------------~~~tag~s~d~~n~~lwDtl~~~--------------------------~~s~v 2331 (2439)
T KOG1064|consen 2304 --------------------------LLATAGRSSDNRNVCLWDTLLPP--------------------------MNSLV 2331 (2439)
T ss_pred --------------------------hhhccccCCCCCcccchhcccCc--------------------------cccee
Confidence 34443 347889999865200 01111
Q ss_pred eeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000251 561 QRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 640 (1784)
Q Consensus 561 ~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 640 (1784)
. ..|..+++++++-|..++|++|+.+|.|+|||++..++++++.. ++ ...++++|+..|.|+||++.
T Consensus 2332 ~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~--~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2332 H--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD--TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred e--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh--hhheeeccCcccceEEEEcc
Confidence 1 67889999999999999999999999999999999988887764 32 35688899999999999998
Q ss_pred CCceEEEEe
Q 000251 641 EGIPIRIYE 649 (1784)
Q Consensus 641 tG~~l~tl~ 649 (1784)
.-.+++++.
T Consensus 2399 ~~~ll~~~p 2407 (2439)
T KOG1064|consen 2399 EFGLLHTFP 2407 (2439)
T ss_pred ccchhhcCc
Confidence 888887776
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.4e-06 Score=101.54 Aligned_cols=310 Identities=12% Similarity=0.065 Sum_probs=182.1
Q ss_pred CCEEEEEcCCcEEEEEECCCCeEEEEEecCCC----------Ce-EEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEe
Q 000251 282 GRYVITGSDDRLVKIWSMETAYCLASCRGHEG----------DI-TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 350 (1784)
Q Consensus 282 G~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~----------~V-tsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L 350 (1784)
+..|++++.+|.|.-+|..+|+.+-....... .+ ..++. ++..|+.++.+|.|..+|..+|+.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 55777777888999999999988876542210 00 01112 3557778888999999999999988776
Q ss_pred cCCCCceEE-EEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECC
Q 000251 351 RGHTAAVTA-IAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA 429 (1784)
Q Consensus 351 ~gH~~~Vts-LafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSp 429 (1784)
.... .+.+ .... ++ .++.+..+|.|..+|..+|+.+.......+.. ........+ ..
T Consensus 147 ~~~~-~~~ssP~v~-~~----~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~-----------~~~~~~sP~----v~- 204 (394)
T PRK11138 147 KVAG-EALSRPVVS-DG----LVLVHTSNGMLQALNESDGAVKWTVNLDVPSL-----------TLRGESAPA----TA- 204 (394)
T ss_pred cCCC-ceecCCEEE-CC----EEEEECCCCEEEEEEccCCCEeeeecCCCCcc-----------cccCCCCCE----EE-
Confidence 5432 2222 1222 22 67778889999999999998776654321100 000001111 11
Q ss_pred CCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCC-CCceEEEEccCcccccccccCCCCCCCCCccccccccC
Q 000251 430 NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE-NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 508 (1784)
Q Consensus 430 dG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~-~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~ 508 (1784)
++ .+++++.+|.+..+|..+++..-........ ..+. .....+..+| ...+
T Consensus 205 ~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~---~~~~~~~~~~~~~sP------------------------~v~~ 256 (394)
T PRK11138 205 FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPT---GATEIDRLVDVDTTP------------------------VVVG 256 (394)
T ss_pred CC-EEEEEcCCCEEEEEEccCChhhheeccccCC---CccchhcccccCCCc------------------------EEEC
Confidence 23 4666777888888888765421110000000 0000 0000000011 1113
Q ss_pred CeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecC
Q 000251 509 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD 588 (1784)
Q Consensus 509 ~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~D 588 (1784)
+.++.++.+|.+..+|+.+++. .|...+. ....++ ..+..|+.++.+
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~-----~W~~~~~--------------------------~~~~~~--~~~~~vy~~~~~ 303 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQI-----VWKREYG--------------------------SVNDFA--VDGGRIYLVDQN 303 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCE-----EEeecCC--------------------------CccCcE--EECCEEEEEcCC
Confidence 5677788899999999987652 3432110 000111 245677778889
Q ss_pred CeEEEEECCCCceEEEEecCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEE-EEEcCCCCE
Q 000251 589 CRICVWNAADGSLVHSLTGHT-ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVD-GKFSPDGAS 666 (1784)
Q Consensus 589 GsI~VWDl~tgklv~~L~gH~-~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~Its-lafSPDGk~ 666 (1784)
|.|..+|..+|+.+.....-. ....+..+. ++ .|+.++.||.|.+.|..+|+.+.........+.. ..+ .+..
T Consensus 304 g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g-~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~ 378 (394)
T PRK11138 304 DRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NG-YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDK 378 (394)
T ss_pred CeEEEEECCCCcEEEcccccCCCcccCCEEE--CC-EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCE
Confidence 999999999998876543211 112222222 34 4556788999999999999999888754333332 122 2457
Q ss_pred EEEEeCCCeEEEEEC
Q 000251 667 IILSDDVGQLYILNT 681 (1784)
Q Consensus 667 LAsgs~DG~I~IWdl 681 (1784)
|++++.+|.|+.++.
T Consensus 379 l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 379 LLIQARDGTVYAITR 393 (394)
T ss_pred EEEEeCCceEEEEeC
Confidence 888899999998874
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.8e-06 Score=112.11 Aligned_cols=116 Identities=14% Similarity=0.084 Sum_probs=82.9
Q ss_pred eeEEEEcCCCCEE-EEEecCCeEEEEECCCCceEEEEec-------------C--------CCCeEEEEEecCCCcEEEE
Q 000251 570 VNMIVWSLDNRFV-LAAIMDCRICVWNAADGSLVHSLTG-------------H--------TESTYVLDVHPFNPRIAMS 627 (1784)
Q Consensus 570 VtsVafSPDG~~L-aSgs~DGsI~VWDl~tgklv~~L~g-------------H--------~~~VtsLafSPdd~~lLaS 627 (1784)
...|+|+|+|++| ++.+.++.|++||+.++.......+ + -..-..+++++ ++.++++
T Consensus 742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVA 820 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVA 820 (1057)
T ss_pred ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEE
Confidence 4678899998844 4555678899999887653221100 0 01235788998 5567888
Q ss_pred EeCCCcEEEEeCCCCceEEEEecc-------------CcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Q 000251 628 AGYDGKTIVWDIWEGIPIRIYEIS-------------RFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 686 (1784)
Q Consensus 628 gs~DG~IrIWDl~tG~~l~tl~~~-------------~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~ 686 (1784)
-..++.|++||..++........+ -.....++++++|+++++-+.++.|++|++.+++.
T Consensus 821 Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 821 DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 888999999999887765443211 11466899999999888888899999999988754
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.4e-06 Score=112.29 Aligned_cols=275 Identities=12% Similarity=0.110 Sum_probs=163.9
Q ss_pred EEEECCC-CCEEEEEcCCcEEEEEECCCCeEEEEEec--C------------CCCeEEEEEcCCCCEEEEEe-CCCEEEE
Q 000251 275 CAIFDRS-GRYVITGSDDRLVKIWSMETAYCLASCRG--H------------EGDITDLAVSSNNALVASAS-NDCIIRV 338 (1784)
Q Consensus 275 ~VaFSPD-G~~LATGS~DGtIkIWDl~Tgk~l~tL~g--H------------~~~VtsLafSpDg~lLASGS-~DGtIrV 338 (1784)
.++++++ |+++++-+.++.|.+||.. |..+..+.+ . -.....|+|.+++..|+++. ..+.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 5788875 6677777888999999976 544444432 1 12357899999888665554 4578999
Q ss_pred EECCCCCeeEEecCC-----------------CCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCC
Q 000251 339 WRLPDGLPISVLRGH-----------------TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 401 (1784)
Q Consensus 339 WDl~tgk~i~~L~gH-----------------~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~ 401 (1784)
+|+.++. +.++.+- -..-+.|+|+|++. .++++.+.++.|++||..++... .+......
T Consensus 651 id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g--~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 651 IDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNE--KVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCC--eEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 9987764 3333210 11346799999544 26677778899999999876532 11100000
Q ss_pred CcccCCCCCCCCCCCCCCCceEEEEECCCCC-EEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEcc
Q 000251 402 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSG 480 (1784)
Q Consensus 402 ~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~-~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSp 480 (1784)
....+ .......-.....|+|+|+|. ++++-+.++.|++||+.++. ...+.+ ...+ + +
T Consensus 727 ~~~~g-----~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~----------~~~~~g-g~~~----~-~ 785 (1057)
T PLN02919 727 RNLNG-----SSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG----------SRLLAG-GDPT----F-S 785 (1057)
T ss_pred ccCCC-----CccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc----------EEEEEe-cccc----c-C
Confidence 00000 000011223467899999987 44555567899999985421 000000 0000 0 0
Q ss_pred CcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCc
Q 000251 481 CAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 560 (1784)
Q Consensus 481 dglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~ 560 (1784)
. ...-.|..||.. .
T Consensus 786 ~---------------------------~l~~fG~~dG~g---------------------------------------~ 799 (1057)
T PLN02919 786 D---------------------------NLFKFGDHDGVG---------------------------------------S 799 (1057)
T ss_pred c---------------------------ccccccCCCCch---------------------------------------h
Confidence 0 000001111100 0
Q ss_pred eeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEe-------------cCCCCeEEEEEecCCCcEEEE
Q 000251 561 QRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT-------------GHTESTYVLDVHPFNPRIAMS 627 (1784)
Q Consensus 561 ~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~-------------gH~~~VtsLafSPdd~~lLaS 627 (1784)
. ........++++++|..+++-+.+++|++||..++....... +.-.....|++++ +++++++
T Consensus 800 ~---~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVa 875 (1057)
T PLN02919 800 E---VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVA 875 (1057)
T ss_pred h---hhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEE
Confidence 0 001123478999999999999999999999998876654321 1122467899999 5678888
Q ss_pred EeCCCcEEEEeCCCCceE
Q 000251 628 AGYDGKTIVWDIWEGIPI 645 (1784)
Q Consensus 628 gs~DG~IrIWDl~tG~~l 645 (1784)
.+.++.|++||+.+++..
T Consensus 876 Dt~Nn~Irvid~~~~~~~ 893 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEAA 893 (1057)
T ss_pred ECCCCEEEEEECCCCccc
Confidence 889999999999988753
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.6e-07 Score=101.57 Aligned_cols=281 Identities=13% Similarity=0.207 Sum_probs=170.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCC-----CeeEEecCCC------------CceEEEEecCCCCccEEEE
Q 000251 311 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDG-----LPISVLRGHT------------AAVTAIAFSPRPGSVYQLL 373 (1784)
Q Consensus 311 H~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg-----k~i~~L~gH~------------~~VtsLafSPdg~~~~~La 373 (1784)
....|+++.|...|.+|++|...|.|.++.-... +....+++|. ..|..|.|..+++.. .++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~-hFL 103 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN-HFL 103 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc-eEE
Confidence 3467999999999999999999999999975432 2233456664 357889998876544 667
Q ss_pred EEeCCCcEEEEecCCCcccc--eeecCCCCCcccC------------CC--------CCC-CCCCCCCCCceEEEEECCC
Q 000251 374 SSSDDGTCRIWDARYSQFSP--RIYIPRPSDAVAG------------RN--------MAP-SSSAGPQSHQIFCCAFNAN 430 (1784)
Q Consensus 374 Sgs~DGtIrIWDl~tg~~l~--~i~l~~~~~~~~g------------~~--------~~~-~~s~~~h~~~V~sLafSpd 430 (1784)
..+.|.+|++|.+....+.- .-.+........+ +. ..+ ......|...|.++.|+.|
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 77889999999987542211 0000000000000 00 000 1122457777899999999
Q ss_pred CCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCC-----CCCceEEEEccCcccccccccCCCCCCCCCcccccc
Q 000251 431 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH-----ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 505 (1784)
Q Consensus 431 G~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH-----~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~ 505 (1784)
...++++ .|=.|.+|++..... ...+.-+..| ..-|++..|+|..
T Consensus 184 ~et~lSa-DdLrINLWnl~i~D~------sFnIVDiKP~nmeeLteVItSaeFhp~~----------------------- 233 (460)
T COG5170 184 KETLLSA-DDLRINLWNLEIIDG------SFNIVDIKPHNMEELTEVITSAEFHPEM----------------------- 233 (460)
T ss_pred hheeeec-cceeeeeccccccCC------ceEEEeccCccHHHHHHHHhhcccCHhH-----------------------
Confidence 8888876 477899999854211 1112222333 2345666677653
Q ss_pred ccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEE
Q 000251 506 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 585 (1784)
Q Consensus 506 ~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSg 585 (1784)
...+.-.+..|.|++-|++.....- .+..+......+....-+..-...|..+.|+++|+||++-
T Consensus 234 --cn~fmYSsSkG~Ikl~DlRq~alcd-------------n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR 298 (460)
T COG5170 234 --CNVFMYSSSKGEIKLNDLRQSALCD-------------NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR 298 (460)
T ss_pred --cceEEEecCCCcEEehhhhhhhhcc-------------CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe
Confidence 2577788889999999998532110 0000000001111111222334568889999999999987
Q ss_pred ecCCeEEEEECCC-CceEEEEecCC------------CCe---EEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000251 586 IMDCRICVWNAAD-GSLVHSLTGHT------------EST---YVLDVHPFNPRIAMSAGYDGKTIVWDI 639 (1784)
Q Consensus 586 s~DGsI~VWDl~t-gklv~~L~gH~------------~~V---tsLafSPdd~~lLaSgs~DG~IrIWDl 639 (1784)
.. -+|+|||+.. ..++.++.-|. ..| ..+.||- +...+++|+.....-|+-+
T Consensus 299 dy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 299 DY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred cc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecC-Ccccccccccccceeeecc
Confidence 65 5899999975 45666665442 223 3466776 4456668887777766653
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-05 Score=101.14 Aligned_cols=202 Identities=9% Similarity=0.024 Sum_probs=122.7
Q ss_pred CeeEEEEcCCCCE-EEEEec---CCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEeCCCC
Q 000251 569 GVNMIVWSLDNRF-VLAAIM---DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD--GKTIVWDIWEG 642 (1784)
Q Consensus 569 ~VtsVafSPDG~~-LaSgs~---DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~D--G~IrIWDl~tG 642 (1784)
.+....|||||+. ++..+. ...|+++|+.+|+...... ..+.+....|+|++.+++++.+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 5678899999985 554443 3469999998887655443 455567788999776777776555 45777788777
Q ss_pred ceEEEEeccCcceEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCcccccc---ccceeecCCCcceEEccCCceeeccc
Q 000251 643 IPIRIYEISRFRLVDGKFSPDGASIILSDD-VG--QLYILNTGQGESQKDA---KYDQFFLGDYRPLVQDTYGNVLDQET 716 (1784)
Q Consensus 643 ~~l~tl~~~~~~ItslafSPDGk~LAsgs~-DG--~I~IWdl~sGe~~~~~---~~~~~fs~D~r~Lv~d~~g~vld~~t 716 (1784)
.... +..+........|+|||+.|+..+. .| .|+++++.+|+..+.. .+...|+||++.|+......--+...
T Consensus 268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~ 346 (419)
T PRK04043 268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFGK 346 (419)
T ss_pred cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccCC
Confidence 6443 4333333345689999998887653 23 7899999887663211 12347999999987544221000000
Q ss_pred ccccCcCCCCCcccCCCCCCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCCCCceEeecCCCc
Q 000251 717 QLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADL 784 (1784)
Q Consensus 717 ql~phl~~l~~~L~D~~~~p~p~~~Q~l~~~rr~~v~~iAfSPDG~~LAvg~d~s~~~~v~lw~l~~~ 784 (1784)
. ...-.+.|..+. ..+.|..+. .....+|||||++||..........+.+.++...
T Consensus 347 ~------~~~I~v~d~~~g----~~~~LT~~~--~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 347 N------TFNLYLISTNSD----YIRRLTANG--VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred C------CcEEEEEECCCC----CeEECCCCC--CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 0 001112222211 112222221 1235789999999999965544445666666443
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.9e-05 Score=88.94 Aligned_cols=277 Identities=13% Similarity=0.061 Sum_probs=167.9
Q ss_pred cCCCCEEEEEECCCCCEEEEEcC---CcEEEEEECCC--CeEEEE--EecCCCCeEEEEEcCCCCEEEEEeC-CCEEEEE
Q 000251 268 GHRNAVYCAIFDRSGRYVITGSD---DRLVKIWSMET--AYCLAS--CRGHEGDITDLAVSSNNALVASASN-DCIIRVW 339 (1784)
Q Consensus 268 GH~~~Vt~VaFSPDG~~LATGS~---DGtIkIWDl~T--gk~l~t--L~gH~~~VtsLafSpDg~lLASGS~-DGtIrVW 339 (1784)
.+.+..+-|+|+|++++|.++-. +|.|.-|.++. |++... ......+-+.++++++|++|+++.. -|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 46677889999999999988744 57788877764 554322 2222334488999999999999876 4899999
Q ss_pred ECCC-CCeeE--EecCCCCc----------eEEEEecCCCCccEEEEEEeC-CCcEEEEecCCCcccceeecCCCCCccc
Q 000251 340 RLPD-GLPIS--VLRGHTAA----------VTAIAFSPRPGSVYQLLSSSD-DGTCRIWDARYSQFSPRIYIPRPSDAVA 405 (1784)
Q Consensus 340 Dl~t-gk~i~--~L~gH~~~----------VtsLafSPdg~~~~~LaSgs~-DGtIrIWDl~tg~~l~~i~l~~~~~~~~ 405 (1784)
-++. |.+.. .+..|.+. +.+..|.|+++ +|++.+- --.|.+|++..|.+......
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~---~l~v~DLG~Dri~~y~~~dg~L~~~~~~-------- 185 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR---YLVVPDLGTDRIFLYDLDDGKLTPADPA-------- 185 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC---EEEEeecCCceEEEEEcccCcccccccc--------
Confidence 9865 53322 22235555 88999999987 5655532 23599999998775443211
Q ss_pred CCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeC-CceEEEEcCCCCCCCCCCCCCcceeeec---CCCCCceEEEEccC
Q 000251 406 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLS---GHENDVNYVQFSGC 481 (1784)
Q Consensus 406 g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~-DG~IrVWDl~tg~~~~s~~~~~~i~~l~---gH~~~V~sLafSpd 481 (1784)
..........|+|+|+|++..+.+. +++|.+|...... ......+.+..+. .-.....+|..+++
T Consensus 186 ---------~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~--g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 186 ---------EVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV--GKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ---------ccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC--ceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 1134556789999999998877664 8999999986521 0001111111111 11234556777777
Q ss_pred cccccccccCCCCCCCCCccccccccCCeEEEEeC-CCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCc
Q 000251 482 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR-DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 560 (1784)
Q Consensus 482 glas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~-DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~ 560 (1784)
| .+|.++-. ...|.+|.+...... ....
T Consensus 255 G--------------------------rFLYasNRg~dsI~~f~V~~~~g~-------------------------L~~~ 283 (346)
T COG2706 255 G--------------------------RFLYASNRGHDSIAVFSVDPDGGK-------------------------LELV 283 (346)
T ss_pred C--------------------------CEEEEecCCCCeEEEEEEcCCCCE-------------------------EEEE
Confidence 6 34443322 235666655421100 0011
Q ss_pred eeccCCCCCeeEEEEcCCCCEEEEEecCC-eEEEEEC--CCCceEEEEe-cCCCCeEEEEE
Q 000251 561 QRILPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNA--ADGSLVHSLT-GHTESTYVLDV 617 (1784)
Q Consensus 561 ~~l~~h~~~VtsVafSPDG~~LaSgs~DG-sI~VWDl--~tgklv~~L~-gH~~~VtsLaf 617 (1784)
.....+....+.+.|++.|++|+++..++ .|.||.. .+|++..... .......||.|
T Consensus 284 ~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f 344 (346)
T COG2706 284 GITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKF 344 (346)
T ss_pred EEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEE
Confidence 11222333467889999999999987654 4777765 4565544333 22333445555
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00022 Score=84.29 Aligned_cols=274 Identities=11% Similarity=0.128 Sum_probs=165.8
Q ss_pred CCEEEEEECCCC--Ce-eEEecCCCCceEEEEecCCCCccEEEEEEeC---CCcEEEEecCC--CcccceeecCCCCCcc
Q 000251 333 DCIIRVWRLPDG--LP-ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD---DGTCRIWDARY--SQFSPRIYIPRPSDAV 404 (1784)
Q Consensus 333 DGtIrVWDl~tg--k~-i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~---DGtIrIWDl~t--g~~l~~i~l~~~~~~~ 404 (1784)
+.-|.+|++.+. +. ...+-.+.+.++-|+|+|+.+ +|.++.. +|.|..|.++. |.+...-.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~---~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~-------- 83 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQR---HLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR-------- 83 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCC---EEEEEEecCCcCcEEEEEEcCCCCeEEEeec--------
Confidence 466999998632 21 122334678889999999987 5555543 57788877764 43221110
Q ss_pred cCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeC-CceEEEEcCCCCCCCCCCCCCcceeeecCCCCC----------c
Q 000251 405 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGHEND----------V 473 (1784)
Q Consensus 405 ~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~-DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~----------V 473 (1784)
..........++++++|++++++.. .|.|.++-+.... . .........|.+. +
T Consensus 84 ----------~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG-----~-l~~~v~~~~h~g~~p~~rQ~~~h~ 147 (346)
T COG2706 84 ----------QTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADG-----S-LQPVVQVVKHTGSGPHERQESPHV 147 (346)
T ss_pred ----------cccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCC-----c-cccceeeeecCCCCCCccccCCcc
Confidence 0011222378999999998888764 5789999885421 1 1112222333333 6
Q ss_pred eEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeC-CCcEEEEeCCCCCCCcccccccccccccCCCCCCCC
Q 000251 474 NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR-DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 552 (1784)
Q Consensus 474 ~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~-DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~ 552 (1784)
.+..+.|++ ++|++..- --.|.+|++..+......
T Consensus 148 H~a~~tP~~--------------------------~~l~v~DLG~Dri~~y~~~dg~L~~~~------------------ 183 (346)
T COG2706 148 HSANFTPDG--------------------------RYLVVPDLGTDRIFLYDLDDGKLTPAD------------------ 183 (346)
T ss_pred ceeeeCCCC--------------------------CEEEEeecCCceEEEEEcccCcccccc------------------
Confidence 677777775 45655543 346888888854321100
Q ss_pred CCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEECCCC-ceEEEEec---------CCCCeEEEEEecCC
Q 000251 553 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADG-SLVHSLTG---------HTESTYVLDVHPFN 621 (1784)
Q Consensus 553 ~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs-~DGsI~VWDl~tg-klv~~L~g---------H~~~VtsLafSPdd 621 (1784)
........+.+.|+|+|++++..+.+ -+++|.+|..... ..+..++. ......+|.++| +
T Consensus 184 --------~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-d 254 (346)
T COG2706 184 --------PAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-D 254 (346)
T ss_pred --------ccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-C
Confidence 00113345677899999999987755 5889999998773 22222221 123466788899 6
Q ss_pred CcEEEEEe-CCCcEEEEeCCCC-ceEEEEe---ccCcceEEEEEcCCCCEEEEEeCC-CeEEEEECC--CCcc
Q 000251 622 PRIAMSAG-YDGKTIVWDIWEG-IPIRIYE---ISRFRLVDGKFSPDGASIILSDDV-GQLYILNTG--QGES 686 (1784)
Q Consensus 622 ~~lLaSgs-~DG~IrIWDl~tG-~~l~tl~---~~~~~ItslafSPDGk~LAsgs~D-G~I~IWdl~--sGe~ 686 (1784)
+++|.++. ....|.+|.+... ..+..+. .+.....+..|+++|++|+++..+ ..|.+|.+. +|+.
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 67766553 3347888877542 2233222 222236789999999999988654 467777654 4443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.8e-05 Score=90.41 Aligned_cols=270 Identities=16% Similarity=0.130 Sum_probs=173.6
Q ss_pred CcEEEEEECCCCeEEE--EE-ecCCCCeEEEEEcC---CCC-EEEEEeCCCEEEEEECCCCCeeEEecCCC------Cce
Q 000251 291 DRLVKIWSMETAYCLA--SC-RGHEGDITDLAVSS---NNA-LVASASNDCIIRVWRLPDGLPISVLRGHT------AAV 357 (1784)
Q Consensus 291 DGtIkIWDl~Tgk~l~--tL-~gH~~~VtsLafSp---Dg~-lLASGS~DGtIrVWDl~tgk~i~~L~gH~------~~V 357 (1784)
-|.+.+|++...+.+. ++ ......+..|.|.. +|. .|+-+...|.|.++..........|.+-. ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4678889887665443 21 23445677777763 454 56677778999999865444333443322 124
Q ss_pred EEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECC-CCCEEEE
Q 000251 358 TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVT 436 (1784)
Q Consensus 358 tsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSp-dG~~Las 436 (1784)
.++.|++.+. .++++..+|.+.+-+.....+.. .....+|...++.+.|+. +-+++.+
T Consensus 125 lslD~~~~~~---~i~vs~s~G~~~~v~~t~~~le~------------------vq~wk~He~E~Wta~f~~~~pnlvyt 183 (339)
T KOG0280|consen 125 LSLDISTSGT---KIFVSDSRGSISGVYETEMVLEK------------------VQTWKVHEFEAWTAKFSDKEPNLVYT 183 (339)
T ss_pred eEEEeeccCc---eEEEEcCCCcEEEEecceeeeee------------------cccccccceeeeeeecccCCCceEEe
Confidence 5678888876 78899999998865544332211 223456888889999986 4478999
Q ss_pred eeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeC
Q 000251 437 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR 516 (1784)
Q Consensus 437 Gs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~ 516 (1784)
|+.|+.+..||++.++ ........-|...|.+|.-+|.. +.+|++|+-
T Consensus 184 GgDD~~l~~~D~R~p~-------~~i~~n~kvH~~GV~SI~ss~~~-------------------------~~~I~TGsY 231 (339)
T KOG0280|consen 184 GGDDGSLSCWDIRIPK-------TFIWHNSKVHTSGVVSIYSSPPK-------------------------PTYIATGSY 231 (339)
T ss_pred cCCCceEEEEEecCCc-------ceeeecceeeecceEEEecCCCC-------------------------CceEEEecc
Confidence 9999999999997432 11223356788899999887643 469999999
Q ss_pred CCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC-EEEEEecCCeEEEEE
Q 000251 517 DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWN 595 (1784)
Q Consensus 517 DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~-~LaSgs~DGsI~VWD 595 (1784)
|-.|++||.++-. .++.. ....++|..+.++|--. .|+.+++-.-.+|.+
T Consensus 232 De~i~~~DtRnm~----------------------------kPl~~-~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 232 DECIRVLDTRNMG----------------------------KPLFK-AKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred ccceeeeehhccc----------------------------Ccccc-CccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 9999999998511 00000 11227899999988543 233344444567777
Q ss_pred CCCCc-----eEEEEecCCCCeEEEEEecCCCcEEEEEe-CCCcEE-EEeCCCCc
Q 000251 596 AADGS-----LVHSLTGHTESTYVLDVHPFNPRIAMSAG-YDGKTI-VWDIWEGI 643 (1784)
Q Consensus 596 l~tgk-----lv~~L~gH~~~VtsLafSPdd~~lLaSgs-~DG~Ir-IWDl~tG~ 643 (1784)
...+. .....+.|.+-++.-.|.. -..+|+|++ +|..++ +|-.-++.
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~-~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDS-KDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred ecccccchheeeeccccccceeecccccc-ccceeeeeeccccceeeeeeeccCC
Confidence 65542 3345567777777777744 234666654 677754 77554443
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-06 Score=105.10 Aligned_cols=290 Identities=15% Similarity=0.220 Sum_probs=180.1
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCC-------CCeeEEecCCCCceEEEEecCCCCccEEEEEEeC
Q 000251 305 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD-------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 377 (1784)
Q Consensus 305 l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~t-------gk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~ 377 (1784)
+..+.||...|+.++--.+.+-+++++.|++|++|.++. ..+..+++.|..+|.++.|..+.. ++ ++.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr---~i--~Sc 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR---SI--ASC 802 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc---ee--eec
Confidence 445679999999998887888899999999999999853 246677889999999999999864 44 456
Q ss_pred CCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEe-eCCceEEEEcCCCCCCCCC
Q 000251 378 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG-SSDTLARVWNACKPNTDDS 456 (1784)
Q Consensus 378 DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasG-s~DG~IrVWDl~tg~~~~s 456 (1784)
||.|.+||.--+..+..+... ...+..+.|.|+-- -+...+++| +...+|+++|.+......
T Consensus 803 D~giHlWDPFigr~Laq~~da---------------pk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~- 865 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDA---------------PKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTC- 865 (1034)
T ss_pred cCcceeecccccchhHhhhcC---------------cccCCCceeEeccc-Ccchheeeeccchhhheeeeccccccee-
Confidence 788999998777655543210 01112233444322 134445555 678899999997643211
Q ss_pred CCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccccc
Q 000251 457 DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 536 (1784)
Q Consensus 457 ~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~ 536 (1784)
.-.+....+...-+.+++..+.| +.++.+-..|+|.+.|.++++.+ ..
T Consensus 866 ---E~kVcna~~Pna~~R~iaVa~~G--------------------------N~lAa~LSnGci~~LDaR~G~vI---Ns 913 (1034)
T KOG4190|consen 866 ---ELKVCNAPGPNALTRAIAVADKG--------------------------NKLAAALSNGCIAILDARNGKVI---NS 913 (1034)
T ss_pred ---eEEeccCCCCchheeEEEeccCc--------------------------chhhHHhcCCcEEEEecCCCcee---cc
Confidence 11122224555667888888776 78999999999999999986532 22
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEE-EECCCCceEEEEecCCCCeEEE
Q 000251 537 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICV-WNAADGSLVHSLTGHTESTYVL 615 (1784)
Q Consensus 537 w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~V-WDl~tgklv~~L~gH~~~VtsL 615 (1784)
|... ......++ .|..+.|+....|.++.| |....|......+....+..-+
T Consensus 914 wrpm--------------------------ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl 966 (1034)
T KOG4190|consen 914 WRPM--------------------------ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL 966 (1034)
T ss_pred CCcc--------------------------cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh
Confidence 3211 00111111 355667777777888888 8877776555544333221111
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCC-C---ceEEEEe--ccCcceEEEEEcCCCCEEEEEeCCCeEEE
Q 000251 616 DVHPFNPRIAMSAGYDGKTIVWDIWE-G---IPIRIYE--ISRFRLVDGKFSPDGASIILSDDVGQLYI 678 (1784)
Q Consensus 616 afSPdd~~lLaSgs~DG~IrIWDl~t-G---~~l~tl~--~~~~~ItslafSPDGk~LAsgs~DG~I~I 678 (1784)
. +- ++ -++++.....+.||--.. . ..+..+. ...+..++++.-|-..-+.+|...|.|.+
T Consensus 967 q-sv-gp-SLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 967 Q-SV-GP-SLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred h-cc-Cc-eeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 1 01 22 344555555667764211 0 1111111 12345677777887777778888888765
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-06 Score=102.21 Aligned_cols=89 Identities=21% Similarity=0.250 Sum_probs=76.8
Q ss_pred CceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEE-ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 000251 559 PRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 637 (1784)
Q Consensus 559 ~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L-~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIW 637 (1784)
....+.+|...++.|+||||+++|+++..|..|+|-.....-.+..+ -||..-|..++.-+ ++.|+|||.|++|++|
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLW 220 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEEE
Confidence 34456788899999999999999999999999999888766666655 47999999999976 5668999999999999
Q ss_pred eCCCCceEEEEe
Q 000251 638 DIWEGIPIRIYE 649 (1784)
Q Consensus 638 Dl~tG~~l~tl~ 649 (1784)
|+.+|+++.++.
T Consensus 221 d~~sgk~L~t~d 232 (390)
T KOG3914|consen 221 DITSGKLLDTCD 232 (390)
T ss_pred ecccCCcccccc
Confidence 999999997775
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00011 Score=84.60 Aligned_cols=148 Identities=19% Similarity=0.242 Sum_probs=96.6
Q ss_pred EEECCCCCEEEEEcCCcEEEEEECCCC--eEEEEEec---CCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEe
Q 000251 276 AIFDRSGRYVITGSDDRLVKIWSMETA--YCLASCRG---HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 350 (1784)
Q Consensus 276 VaFSPDG~~LATGS~DGtIkIWDl~Tg--k~l~tL~g---H~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L 350 (1784)
++.+.+|+.||..- |..|.|-...+. ..+..... ..-.=+-++||||+.+||.+...|+|+++|+.. ..+..+
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 67789999998874 567777766543 23333332 223457899999999999999999999999853 444343
Q ss_pred cC-------CCCceEEEEecCCCCc---cEEEEEEeCCCcEEEEecCCCcc---cceeecCCCCCcccCCCCCCCCCCCC
Q 000251 351 RG-------HTAAVTAIAFSPRPGS---VYQLLSSSDDGTCRIWDARYSQF---SPRIYIPRPSDAVAGRNMAPSSSAGP 417 (1784)
Q Consensus 351 ~g-------H~~~VtsLafSPdg~~---~~~LaSgs~DGtIrIWDl~tg~~---l~~i~l~~~~~~~~g~~~~~~~s~~~ 417 (1784)
.. -...|.+|.|.+.... ...|++-..+|.++-|-+..+.. ..... ......
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hs---------------fsf~~~ 145 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHS---------------FSFSSH 145 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEE---------------EEeccc
Confidence 22 2356777888765321 13677788888888777643211 11110 011123
Q ss_pred CCCceEEEEECCCCCEEEEeeCC
Q 000251 418 QSHQIFCCAFNANGTVFVTGSSD 440 (1784)
Q Consensus 418 h~~~V~sLafSpdG~~LasGs~D 440 (1784)
....|.++.|+|..++|++||..
T Consensus 146 yp~Gi~~~vy~p~h~LLlVgG~~ 168 (282)
T PF15492_consen 146 YPHGINSAVYHPKHRLLLVGGCE 168 (282)
T ss_pred CCCceeEEEEcCCCCEEEEeccC
Confidence 46679999999998888887753
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.8e-07 Score=114.07 Aligned_cols=166 Identities=14% Similarity=0.221 Sum_probs=125.2
Q ss_pred cccceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC--
Q 000251 257 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDC-- 334 (1784)
Q Consensus 257 ~~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DG-- 334 (1784)
...++..++|+.|+...+|++|+-+.+.|+.|+..|.|+++++.+|.......+|...|+.|.-+-||..+++.+.-.
T Consensus 1088 FSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred HhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence 456788889999999999999999999999999999999999999999999999999999999999999777655432
Q ss_pred EEEEEECCC-CCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCC
Q 000251 335 IIRVWRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 413 (1784)
Q Consensus 335 tIrVWDl~t-gk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~ 413 (1784)
-..+|++.. +.+.+++. .-.++.|+.... .-+.|+.-....+||+.++..+.++..+..
T Consensus 1168 lsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q---~r~~gt~~d~a~~YDvqT~~~l~tylt~~~------------- 1227 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFD----EDKAVKFSNSLQ---FRALGTEADDALLYDVQTCSPLQTYLTDTV------------- 1227 (1516)
T ss_pred hHHHhccccccCcccccc----ccceeehhhhHH---HHHhcccccceEEEecccCcHHHHhcCcch-------------
Confidence 477999853 45555554 345788887643 233444445689999999987776532111
Q ss_pred CCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCC
Q 000251 414 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 450 (1784)
Q Consensus 414 s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~t 450 (1784)
.....-.+..|+|+..+|+ .|| .+||++.
T Consensus 1228 ---~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1228 ---TSSYSNNLAHFSPCDTLIL---NDG--VLWDVRI 1256 (1516)
T ss_pred ---hhhhhccccccCCCcceEe---eCc--eeeeecc
Confidence 1122236778999888776 455 3799875
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.7e-06 Score=107.15 Aligned_cols=206 Identities=24% Similarity=0.364 Sum_probs=142.7
Q ss_pred CCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCC--
Q 000251 354 TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-- 431 (1784)
Q Consensus 354 ~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG-- 431 (1784)
.+.+.++.++|.|. -++.++.-| +.+.|+...-...+... ....-.|-...|++..
T Consensus 24 ~~~~~a~si~p~gr---di~lAsr~g-l~i~dld~p~~ppr~l~------------------h~tpw~vad~qws~h~a~ 81 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGR---DIVLASRQG-LYIIDLDDPFTPPRWLH------------------HITPWQVADVQWSPHPAK 81 (1081)
T ss_pred cCcccceeeccccc---hhhhhhhcC-eEEEeccCCCCCceeee------------------ccCcchhcceecccCCCC
Confidence 46677888999886 567777666 55666654432222210 0112234556676643
Q ss_pred CEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeE
Q 000251 432 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 511 (1784)
Q Consensus 432 ~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~L 511 (1784)
.+-++........+|++..... ...-..+.+|...|+.+.|.|.. ++.+
T Consensus 82 ~~wiVsts~qkaiiwnlA~ss~------~aIef~lhghsraitd~n~~~q~-------------------------pdVl 130 (1081)
T KOG0309|consen 82 PYWIVSTSNQKAIIWNLAKSSS------NAIEFVLHGHSRAITDINFNPQH-------------------------PDVL 130 (1081)
T ss_pred ceeEEecCcchhhhhhhhcCCc------cceEEEEecCccceeccccCCCC-------------------------Ccce
Confidence 3444444555566999865321 33345678999999999999864 4789
Q ss_pred EEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeE
Q 000251 512 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRI 591 (1784)
Q Consensus 512 VSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI 591 (1784)
++++.|-.+..||+++.. .+......-......|+|+.....+.+.+....|
T Consensus 131 atcsvdt~vh~wd~rSp~----------------------------~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 131 ATCSVDTYVHAWDMRSPH----------------------------RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred eeccccccceeeeccCCC----------------------------cceeeeecccccCceeeecccCcchhhhccCCce
Confidence 999999999999999632 1122222334456778998777677777777889
Q ss_pred EEEECCCC-ceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000251 592 CVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 640 (1784)
Q Consensus 592 ~VWDl~tg-klv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~ 640 (1784)
.+||.+.| .++..+++|...|+.++|...--..+++.+.||+|++||..
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence 99999875 57889999999999999976555677889999999999864
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.1e-06 Score=93.98 Aligned_cols=235 Identities=18% Similarity=0.239 Sum_probs=147.0
Q ss_pred CCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCC------------CceEEEEccCccccc
Q 000251 419 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN------------DVNYVQFSGCAVASR 486 (1784)
Q Consensus 419 ~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~------------~V~sLafSpdglas~ 486 (1784)
...|+++.|...|.+|++|...|.|.+|.-.... .-..+.+..+++|.. .|..|.|..++
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~----~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t---- 97 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSY----GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT---- 97 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeeccccc----ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC----
Confidence 4568999999999999999999999999764321 111223344555543 34555554332
Q ss_pred ccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccc-ccccccccccCCCCCCCCC------C-----
Q 000251 487 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKA-ARWTQAYHLKVPPPPMPPQ------P----- 554 (1784)
Q Consensus 487 ~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~-~~w~~~~~l~~~~~~~~~~------~----- 554 (1784)
....++..+.|.+|++|.+......... ......++.....+..... .
T Consensus 98 --------------------~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~ 157 (460)
T COG5170 98 --------------------GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDE 157 (460)
T ss_pred --------------------CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccce
Confidence 1246788889999999998754211000 0011111111110000000 0
Q ss_pred -CCCCCcee-ccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCce---EEEEecCC-----CCeEEEEEecCCCcE
Q 000251 555 -PRGGPRQR-ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL---VHSLTGHT-----ESTYVLDVHPFNPRI 624 (1784)
Q Consensus 555 -~~~~~~~~-l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgkl---v~~L~gH~-----~~VtsLafSPdd~~l 624 (1784)
....+.+. ...|...|+++.|..|..+++++ .|-.|.+|++.-... +.-++.|. ..|++..|||....+
T Consensus 158 iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~ 236 (460)
T COG5170 158 IIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNV 236 (460)
T ss_pred EEEeccceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcce
Confidence 00112221 24577789999999999988877 467899999864321 22334443 358899999977777
Q ss_pred EEEEeCCCcEEEEeCCCCceE----EE------------EeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000251 625 AMSAGYDGKTIVWDIWEGIPI----RI------------YEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 683 (1784)
Q Consensus 625 LaSgs~DG~IrIWDl~tG~~l----~t------------l~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~s 683 (1784)
+.-.+..|.|++-|+....+. .. +..-...|.++.|+++|++|++-+. -+|.|||+.-
T Consensus 237 fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm 310 (460)
T COG5170 237 FMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNM 310 (460)
T ss_pred EEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccc
Confidence 777788999999999743211 11 1112236788999999999998766 7999999864
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.2e-05 Score=85.55 Aligned_cols=245 Identities=13% Similarity=0.059 Sum_probs=155.5
Q ss_pred CCEEEEEcCCcEEEEEECCCCeE-EEEEecCCCCeEEEEEcCC-CCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEE
Q 000251 282 GRYVITGSDDRLVKIWSMETAYC-LASCRGHEGDITDLAVSSN-NALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTA 359 (1784)
Q Consensus 282 G~~LATGS~DGtIkIWDl~Tgk~-l~tL~gH~~~VtsLafSpD-g~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~Vts 359 (1784)
-.+||.|+.-|...+|...+... ++....|...|+-+.=..+ ..-+..++.|.++++.++.-+.....+....-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 35899999999999999986543 3444455555443322222 224667778888888887654332222111123889
Q ss_pred EEecCCCCccEEEEEEeCCCcEEEEecCCCcc-cceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEee
Q 000251 360 IAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF-SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 438 (1784)
Q Consensus 360 LafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~-l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs 438 (1784)
++++++++ ++++.+....|.+|.+..... +..+.. .+....-.+..|+.....+|++.
T Consensus 164 ~~~snd~~---~~~~Vgds~~Vf~y~id~~sey~~~~~~------------------a~t~D~gF~~S~s~~~~~FAv~~ 222 (344)
T KOG4532|consen 164 LHYSNDPS---WGSSVGDSRRVFRYAIDDESEYIENIYE------------------APTSDHGFYNSFSENDLQFAVVF 222 (344)
T ss_pred eEEcCCCc---eEEEecCCCcceEEEeCCccceeeeeEe------------------cccCCCceeeeeccCcceEEEEe
Confidence 99999997 899999999999998875432 222211 12233456888999999999999
Q ss_pred CCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCC
Q 000251 439 SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG 518 (1784)
Q Consensus 439 ~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DG 518 (1784)
.||++.|||++...... .........|.+.+..+.|++.|. -++|+..-.-+
T Consensus 223 Qdg~~~I~DVR~~~tpm----~~~sstrp~hnGa~R~c~Fsl~g~------------------------lDLLf~sEhfs 274 (344)
T KOG4532|consen 223 QDGTCAIYDVRNMATPM----AEISSTRPHHNGAFRVCRFSLYGL------------------------LDLLFISEHFS 274 (344)
T ss_pred cCCcEEEEEecccccch----hhhcccCCCCCCceEEEEecCCCc------------------------ceEEEEecCcc
Confidence 99999999998643221 112233456899999999998663 25666666678
Q ss_pred cEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECC
Q 000251 519 SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAA 597 (1784)
Q Consensus 519 tIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~ 597 (1784)
.+.+.|+++...+...... +..........|..-+|+.++.-+.+.+.+ .+.-|++.
T Consensus 275 ~~hv~D~R~~~~~q~I~i~---------------------~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 275 RVHVVDTRNYVNHQVIVIP---------------------DDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred eEEEEEcccCceeeEEecC---------------------ccccccccccccccccccCCCcccccccch-hhheeecc
Confidence 8999999975532211100 000111122347777888887776666544 34445543
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.9e-05 Score=91.60 Aligned_cols=298 Identities=13% Similarity=0.107 Sum_probs=192.4
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCC--C-CeeEEecCCCCceEEEEecCCCCccEEEEEEeC-CCcEEEEe
Q 000251 310 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPD--G-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD-DGTCRIWD 385 (1784)
Q Consensus 310 gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~t--g-k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~-DGtIrIWD 385 (1784)
-|.+.|+.+..+ -.+++.+++.||.++.|--.. | ..+..+..|-+.|.+++.+-++- ++.+++. |..++++|
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~---L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW---LFRSVEDPDHSVKVFD 82 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce---eEeeccCcccceeEEE
Confidence 377778877654 456999999999999997432 2 34556678999999999999985 7778677 99999999
Q ss_pred cCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCC--CEEEE-eeCCceEEEEcCCCCCCCCCCCCCcc
Q 000251 386 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG--TVFVT-GSSDTLARVWNACKPNTDDSDQPNHE 462 (1784)
Q Consensus 386 l~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG--~~Las-Gs~DG~IrVWDl~tg~~~~s~~~~~~ 462 (1784)
+.+-....-+.+...+ +.+ ++..++.. ..|++ .-.+|.|.|+|-.... ...
T Consensus 83 vEn~DminmiKL~~lP------------------g~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~-------~q~ 136 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLP------------------GFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDF-------CQD 136 (558)
T ss_pred eeccchhhhcccccCC------------------Cce-EEecCCCCeeeeEEeecccCCCcEEECCcCCc-------Ccc
Confidence 9877655444332211 111 11222221 13333 3457889999875432 123
Q ss_pred eeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCccccccccccc
Q 000251 463 IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 542 (1784)
Q Consensus 463 i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~ 542 (1784)
...-.-|..+|..+.+.+.+ +.+++....|.|..|.....-
T Consensus 137 ~~fkklH~sPV~~i~y~qa~--------------------------Ds~vSiD~~gmVEyWs~e~~~------------- 177 (558)
T KOG0882|consen 137 GYFKKLHFSPVKKIRYNQAG--------------------------DSAVSIDISGMVEYWSAEGPF------------- 177 (558)
T ss_pred ceecccccCceEEEEeeccc--------------------------cceeeccccceeEeecCCCcc-------------
Confidence 34456789999999999876 688888889999999776200
Q ss_pred ccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEec---------------
Q 000251 543 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG--------------- 607 (1784)
Q Consensus 543 l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~g--------------- 607 (1784)
..+.............+..+........++.|+|+|..+.+-+.|..|+++++.+|++++.+..
T Consensus 178 -qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l 256 (558)
T KOG0882|consen 178 -QFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGL 256 (558)
T ss_pred -cCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccc
Confidence 0000000000111111222233445678999999999999999999999999999987655421
Q ss_pred -----------------CCC-CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccC-----------------
Q 000251 608 -----------------HTE-STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR----------------- 652 (1784)
Q Consensus 608 -----------------H~~-~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~----------------- 652 (1784)
|.. .-+.+.|.. .+.+|+-|+.=| |+|.++.++++++.+-...
T Consensus 257 ~~VelgRRmaverelek~~~~~~~~~~fde-s~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~ 334 (558)
T KOG0882|consen 257 MHVELGRRMAVERELEKHGSTVGTNAVFDE-SGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSN 334 (558)
T ss_pred ceeehhhhhhHHhhHhhhcCcccceeEEcC-CCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhcc
Confidence 111 123455655 456666555443 8999999998888763110
Q ss_pred c-ce-------EEEEEcCCCCEEEEEeCCCeEEEE
Q 000251 653 F-RL-------VDGKFSPDGASIILSDDVGQLYIL 679 (1784)
Q Consensus 653 ~-~I-------tslafSPDGk~LAsgs~DG~I~IW 679 (1784)
. .+ -.+.+-+|-.+++++-....+++|
T Consensus 335 ~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 335 LAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred chhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 0 00 012366777777788788888888
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00011 Score=83.04 Aligned_cols=248 Identities=11% Similarity=0.000 Sum_probs=151.5
Q ss_pred CcEEEEEECCCCe--EEEEEecCCCCeEEEEEcC-----CCCEEEEEeCCCEEEEEECCCCCe-eEEecCCCCceEEEEe
Q 000251 291 DRLVKIWSMETAY--CLASCRGHEGDITDLAVSS-----NNALVASASNDCIIRVWRLPDGLP-ISVLRGHTAAVTAIAF 362 (1784)
Q Consensus 291 DGtIkIWDl~Tgk--~l~tL~gH~~~VtsLafSp-----Dg~lLASGS~DGtIrVWDl~tgk~-i~~L~gH~~~VtsLaf 362 (1784)
...|-+|++-+.. .+... +.|.|.| ...+||.|+.-|...+|...+... +.....|...|+-+.=
T Consensus 51 t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred eeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 3456677765443 22222 2344444 344899999999999999876543 3333444444433222
Q ss_pred cCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCce
Q 000251 363 SPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 442 (1784)
Q Consensus 363 SPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~ 442 (1784)
.-+.. ..+..++.|.++++.++..+........ ..-.+.++++++|++++++.+....
T Consensus 124 ~cd~~--~~~~i~sndht~k~~~~~~~s~~~~~h~--------------------~~~~~ns~~~snd~~~~~~Vgds~~ 181 (344)
T KOG4532|consen 124 YCDLK--FPLNIASNDHTGKTMVVSGDSNKFAVHN--------------------QNLTQNSLHYSNDPSWGSSVGDSRR 181 (344)
T ss_pred hcccc--cceeeccCCcceeEEEEecCcccceeec--------------------cccceeeeEEcCCCceEEEecCCCc
Confidence 22222 2477788999999998876643333211 1123789999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCccee-eecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEE
Q 000251 443 ARVWNACKPNTDDSDQPNHEID-VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 521 (1784)
Q Consensus 443 IrVWDl~tg~~~~s~~~~~~i~-~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIr 521 (1784)
|..|.+.... ..... .....++.-.+..|+... ..+|++..||++.
T Consensus 182 Vf~y~id~~s-------ey~~~~~~a~t~D~gF~~S~s~~~--------------------------~~FAv~~Qdg~~~ 228 (344)
T KOG4532|consen 182 VFRYAIDDES-------EYIENIYEAPTSDHGFYNSFSEND--------------------------LQFAVVFQDGTCA 228 (344)
T ss_pred ceEEEeCCcc-------ceeeeeEecccCCCceeeeeccCc--------------------------ceEEEEecCCcEE
Confidence 9999885421 11111 223333344555666443 5899999999999
Q ss_pred EEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC--EEEEEecCCeEEEEECCCC
Q 000251 522 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR--FVLAAIMDCRICVWNAADG 599 (1784)
Q Consensus 522 IWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~--~LaSgs~DGsI~VWDl~tg 599 (1784)
|||++.... ++. .....-..|.+.+..+.|++.|. +|+..-.-+.+.|.|++++
T Consensus 229 I~DVR~~~t------------------pm~------~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 229 IYDVRNMAT------------------PMA------EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred EEEeccccc------------------chh------hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 999995221 110 11111234778899999998664 3444445578999999998
Q ss_pred ceEEEEec-------CC-CCeEEEEEecCCCcE
Q 000251 600 SLVHSLTG-------HT-ESTYVLDVHPFNPRI 624 (1784)
Q Consensus 600 klv~~L~g-------H~-~~VtsLafSPdd~~l 624 (1784)
.-.+.+.- |. ..|+.-.|+..+...
T Consensus 285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~ 317 (344)
T KOG4532|consen 285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESN 317 (344)
T ss_pred ceeeEEecCccccccccccccccccccCCCccc
Confidence 76655432 22 236666666544333
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00049 Score=81.48 Aligned_cols=100 Identities=13% Similarity=0.089 Sum_probs=75.1
Q ss_pred EEEEEECC-CCCEEEEEcCCc-EEEEEECCCCeEEEEEecCCCCe--EEEEEcCCCCEEEEEeC-----CCEEEEEECC-
Q 000251 273 VYCAIFDR-SGRYVITGSDDR-LVKIWSMETAYCLASCRGHEGDI--TDLAVSSNNALVASASN-----DCIIRVWRLP- 342 (1784)
Q Consensus 273 Vt~VaFSP-DG~~LATGS~DG-tIkIWDl~Tgk~l~tL~gH~~~V--tsLafSpDg~lLASGS~-----DGtIrVWDl~- 342 (1784)
...++.+| .+..+|.+-.-| ...+||..+|+.++.+....+.- -.-+||+||++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34678889 566777777665 57789999999988776433222 13579999999998744 4899999998
Q ss_pred CCCeeEEecCCCCceEEEEecCCCCccEEEEEE
Q 000251 343 DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 375 (1784)
Q Consensus 343 tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSg 375 (1784)
+.+.+..+..|.-.-..|.+.||+. .|+++
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~---tLvVA 116 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGE---TLVVA 116 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCC---EEEEE
Confidence 5577888888877778899999986 45544
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.8e-05 Score=94.25 Aligned_cols=318 Identities=15% Similarity=0.136 Sum_probs=196.4
Q ss_pred CCCCEEEEEECCCCCEEEEEcCCcEEEEEECCC--C-eEEEEEecCCCCeEEEEEcCCCCEEEEEeC-CCEEEEEECCCC
Q 000251 269 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET--A-YCLASCRGHEGDITDLAVSSNNALVASASN-DCIIRVWRLPDG 344 (1784)
Q Consensus 269 H~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~T--g-k~l~tL~gH~~~VtsLafSpDg~lLASGS~-DGtIrVWDl~tg 344 (1784)
|.+.|+.|.-+ -.+++.+++.||.++.|--.. | ..+..++.|-+.|.+++.+.++.++.|++. |..++++|+.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 77878877655 456999999999999997543 2 334456689999999999999999999887 999999998876
Q ss_pred CeeEEec--CCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCce
Q 000251 345 LPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 422 (1784)
Q Consensus 345 k~i~~L~--gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V 422 (1784)
..+..++ --.+.+..+ .++...-...-++.-.+|.|.++|-....+...+ ...-|..+|
T Consensus 87 DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~------------------fkklH~sPV 147 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY------------------FKKLHFSPV 147 (558)
T ss_pred chhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccce------------------ecccccCce
Confidence 5443222 122222222 2222111112333446788999987655432221 234578889
Q ss_pred EEEEECCCCCEEEEeeCCceEEEEcCCCC-C-----CCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCC
Q 000251 423 FCCAFNANGTVFVTGSSDTLARVWNACKP-N-----TDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 496 (1784)
Q Consensus 423 ~sLafSpdG~~LasGs~DG~IrVWDl~tg-~-----~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~ 496 (1784)
.++.+++-+..+++....|.|.-|..... + ..........+..+........++.|+|.+
T Consensus 148 ~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-------------- 213 (558)
T KOG0882|consen 148 KKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-------------- 213 (558)
T ss_pred EEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc--------------
Confidence 99999999999999999999999998620 0 000001111112222334556788888886
Q ss_pred CCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCC------CCCceeccCCC-CC
Q 000251 497 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR------GGPRQRILPTP-RG 569 (1784)
Q Consensus 497 ~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~------~~~~~~l~~h~-~~ 569 (1784)
..+.+-+.|..|+++++.+++.......-....+..... +..... ......+..|. ..
T Consensus 214 ------------~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks---~y~l~~VelgRRmaverelek~~~~~ 278 (558)
T KOG0882|consen 214 ------------AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKS---PYGLMHVELGRRMAVERELEKHGSTV 278 (558)
T ss_pred ------------CcccccCcccEEEEEEeccchhhhhhhccchhhhhcccc---ccccceeehhhhhhHHhhHhhhcCcc
Confidence 577888899999999999877543322111111100000 000000 00011112222 23
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCC------------------CCe-------EEEEEecCCCcE
Q 000251 570 VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHT------------------EST-------YVLDVHPFNPRI 624 (1784)
Q Consensus 570 VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~------------------~~V-------tsLafSPdd~~l 624 (1784)
-+.++|...|++|+.|+.=| |+|.++.++.+++.+-... ..+ ..+.+-+ ++.+
T Consensus 279 ~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~-dpt~ 356 (558)
T KOG0882|consen 279 GTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQK-DPTI 356 (558)
T ss_pred cceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCC-CCeE
Confidence 45678999999999988754 8999999998877653211 000 1122334 6677
Q ss_pred EEEEeCCCcEEEE
Q 000251 625 AMSAGYDGKTIVW 637 (1784)
Q Consensus 625 LaSgs~DG~IrIW 637 (1784)
++++-....++++
T Consensus 357 ~c~a~kk~rfylf 369 (558)
T KOG0882|consen 357 VCTAFKKNRFYLF 369 (558)
T ss_pred EEeeeecceEEEE
Confidence 7777777777777
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.4e-06 Score=98.21 Aligned_cols=123 Identities=28% Similarity=0.340 Sum_probs=96.2
Q ss_pred CCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEE
Q 000251 270 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 349 (1784)
Q Consensus 270 ~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~ 349 (1784)
..+|..+.++......-.+++...+.+|.+..+.+.- +-||-.-+++|+|+||+++|+++..|..|+|-.......+..
T Consensus 110 ~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~-~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ies 188 (390)
T KOG3914|consen 110 PTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP-ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIES 188 (390)
T ss_pred cceeeeeeccceEEEEeecCCceeeeeecccccCcch-hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhh
Confidence 3445555554444444445677788888887755443 458999999999999999999999999999988766555554
Q ss_pred e-cCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeec
Q 000251 350 L-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 397 (1784)
Q Consensus 350 L-~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l 397 (1784)
+ -||+.-|..++..++. .|++++.|++|++||+.+|+++.++.+
T Consensus 189 fclGH~eFVS~isl~~~~----~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 189 FCLGHKEFVSTISLTDNY----LLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred hccccHhheeeeeeccCc----eeeecCCCCcEEEEecccCCcccccch
Confidence 4 5799999999999874 689999999999999999998866543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00073 Score=78.95 Aligned_cols=230 Identities=14% Similarity=0.073 Sum_probs=145.1
Q ss_pred EEEEcC-CCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEec-CCCCccEEEEEEeCCCcEEEEecCCCcccce
Q 000251 317 DLAVSS-NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFS-PRPGSVYQLLSSSDDGTCRIWDARYSQFSPR 394 (1784)
Q Consensus 317 sLafSp-Dg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafS-Pdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~ 394 (1784)
+++|.+ ++.++++-...+.|..|+..++.... +.... ...+++. +++ .|+.+...+ +.++|+.+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g----~l~v~~~~~-~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG----RLYVADSGG-IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS----EEEEEETTC-EEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC----EEEEEEcCc-eEEEecCCCcEEEE
Confidence 578887 67777777778999999988775433 32222 7777887 664 566666655 56669888865433
Q ss_pred eecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCC--------ceEEEEcCCCCCCCCCCCCCcceeee
Q 000251 395 IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD--------TLARVWNACKPNTDDSDQPNHEIDVL 466 (1784)
Q Consensus 395 i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~D--------G~IrVWDl~tg~~~~s~~~~~~i~~l 466 (1784)
..... .......++.+++.++|++.++.... |.|..++.. ..+..+
T Consensus 76 ~~~~~---------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-----------~~~~~~ 129 (246)
T PF08450_consen 76 ADLPD---------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-----------GKVTVV 129 (246)
T ss_dssp EEEET---------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-----------SEEEEE
T ss_pred eeccC---------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-----------CeEEEE
Confidence 32210 01134568899999999977775543 456666663 123333
Q ss_pred cCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCC
Q 000251 467 SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVP 546 (1784)
Q Consensus 467 ~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~ 546 (1784)
...-...+.|+|+|++ ..++++-+..+.|..+++........ ..
T Consensus 130 ~~~~~~pNGi~~s~dg-------------------------~~lyv~ds~~~~i~~~~~~~~~~~~~--~~--------- 173 (246)
T PF08450_consen 130 ADGLGFPNGIAFSPDG-------------------------KTLYVADSFNGRIWRFDLDADGGELS--NR--------- 173 (246)
T ss_dssp EEEESSEEEEEEETTS-------------------------SEEEEEETTTTEEEEEEEETTTCCEE--EE---------
T ss_pred ecCcccccceEECCcc-------------------------hheeecccccceeEEEecccccccee--ee---------
Confidence 3344566889999986 12455777888888888863221000 00
Q ss_pred CCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEe-cCCCcEE
Q 000251 547 PPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH-PFNPRIA 625 (1784)
Q Consensus 547 ~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafS-Pdd~~lL 625 (1784)
.....+.......-.+++..+|++.++....+.|.+++.. |+++..+......+++++|. ++...++
T Consensus 174 -----------~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 174 -----------RVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp -----------EEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred -----------eeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence 0000111111346789999999988888888999999987 99998887665689999994 5445566
Q ss_pred EEE
Q 000251 626 MSA 628 (1784)
Q Consensus 626 aSg 628 (1784)
+|.
T Consensus 242 vTt 244 (246)
T PF08450_consen 242 VTT 244 (246)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00045 Score=86.55 Aligned_cols=276 Identities=11% Similarity=0.114 Sum_probs=156.3
Q ss_pred CCEEEEEeCCCEEEEEECCCCCeeEEecCCC--C--------ce-EEEEecCCCCccEEEEEEeCCCcEEEEecCCCccc
Q 000251 324 NALVASASNDCIIRVWRLPDGLPISVLRGHT--A--------AV-TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 392 (1784)
Q Consensus 324 g~lLASGS~DGtIrVWDl~tgk~i~~L~gH~--~--------~V-tsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l 392 (1784)
+..|++++.+|.|..+|..+|+.+....... . .+ ..++.. +. .++.++.+|.|..+|..+|+.+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~--~~---~v~v~~~~g~l~ald~~tG~~~ 143 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA--GG---KVYIGSEKGQVYALNAEDGEVA 143 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE--CC---EEEEEcCCCEEEEEECCCCCCc
Confidence 4466777777888888888888776553221 0 00 011121 22 6778889999999999999877
Q ss_pred ceeecCCCCCcccCCCCCCCCCCCCCCCceEE-EEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCC
Q 000251 393 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC-CAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN 471 (1784)
Q Consensus 393 ~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~s-LafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~ 471 (1784)
.+..... .+.+ ..+ .+..+++++.++.|..+|..+++. +........
T Consensus 144 W~~~~~~---------------------~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~---------~W~~~~~~~ 191 (394)
T PRK11138 144 WQTKVAG---------------------EALSRPVV--SDGLVLVHTSNGMLQALNESDGAV---------KWTVNLDVP 191 (394)
T ss_pred ccccCCC---------------------ceecCCEE--ECCEEEEECCCCEEEEEEccCCCE---------eeeecCCCC
Confidence 6653211 0111 111 134566677889999999977542 222211100
Q ss_pred CceEEE--EccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCC
Q 000251 472 DVNYVQ--FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 549 (1784)
Q Consensus 472 ~V~sLa--fSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~ 549 (1784)
.+ .+. .+|. ..++.++.++.+|.+..+|..+++. .|...... +
T Consensus 192 ~~-~~~~~~sP~------------------------v~~~~v~~~~~~g~v~a~d~~~G~~-----~W~~~~~~--~--- 236 (394)
T PRK11138 192 SL-TLRGESAPA------------------------TAFGGAIVGGDNGRVSAVLMEQGQL-----IWQQRISQ--P--- 236 (394)
T ss_pred cc-cccCCCCCE------------------------EECCEEEEEcCCCEEEEEEccCChh-----hheecccc--C---
Confidence 00 000 0010 0124677788899999999887653 23321100 0
Q ss_pred CCCCCCCCCCceeccC-CCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEE
Q 000251 550 MPPQPPRGGPRQRILP-TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628 (1784)
Q Consensus 550 ~~~~~~~~~~~~~l~~-h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSg 628 (1784)
.......++.. ...++ + .+..|++++.+|.+..+|+.+|+.+...... ....+... ++ .|+.+
T Consensus 237 -----~~~~~~~~~~~~~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~-~vy~~ 300 (394)
T PRK11138 237 -----TGATEIDRLVDVDTTPV----V--VGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAVD--GG-RIYLV 300 (394)
T ss_pred -----CCccchhcccccCCCcE----E--ECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEEE--CC-EEEEE
Confidence 00000000000 01111 1 2456777778999999999999987765421 11222221 34 44456
Q ss_pred eCCCcEEEEeCCCCceEEEEeccCcc-eEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccc
Q 000251 629 GYDGKTIVWDIWEGIPIRIYEISRFR-LVDGKFSPDGASIILSDDVGQLYILNTGQGESQKD 689 (1784)
Q Consensus 629 s~DG~IrIWDl~tG~~l~tl~~~~~~-ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~~~~ 689 (1784)
+.+|.|..+|..+|+.+......... .....+ .+.+|++++.+|.|+++|..+|+.+..
T Consensus 301 ~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 301 DQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred cCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 78999999999999887654321111 121222 256778889999999999999987643
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00034 Score=88.14 Aligned_cols=226 Identities=7% Similarity=-0.003 Sum_probs=125.5
Q ss_pred CEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeC---CCcEEEEecCCCcccceeecCCCCCcccCCCCC
Q 000251 334 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD---DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 410 (1784)
Q Consensus 334 GtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~---DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~ 410 (1784)
..|.+-|.. |...+.+... +.+....|+|+++. .++..+. ...|.++|+.+++......
T Consensus 169 ~~l~~~d~d-g~~~~~~~~~-~~~~~p~wSpDG~~--~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-------------- 230 (419)
T PRK04043 169 SNIVLADYT-LTYQKVIVKG-GLNIFPKWANKEQT--AFYYTSYGERKPTLYKYNLYTGKKEKIAS-------------- 230 (419)
T ss_pred ceEEEECCC-CCceeEEccC-CCeEeEEECCCCCc--EEEEEEccCCCCEEEEEECCCCcEEEEec--------------
Confidence 356665653 4333434333 37888999999862 2333332 4568889998776332211
Q ss_pred CCCCCCCCCCceEEEEECCCCCEEEEee-C--CceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccc
Q 000251 411 PSSSAGPQSHQIFCCAFNANGTVFVTGS-S--DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 487 (1784)
Q Consensus 411 ~~~s~~~h~~~V~sLafSpdG~~LasGs-~--DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~ 487 (1784)
..+......|+|||+.|+... . +..|.++++.++. ...+..+........|+|+|
T Consensus 231 -------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~----------~~~LT~~~~~d~~p~~SPDG----- 288 (419)
T PRK04043 231 -------SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT----------LTQITNYPGIDVNGNFVEDD----- 288 (419)
T ss_pred -------CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc----------EEEcccCCCccCccEECCCC-----
Confidence 223355678999998776543 2 3567788875431 22333333333456799987
Q ss_pred cccCCCCCCCCCccccccccCCeEE-EEeCCC--cEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceecc
Q 000251 488 SLADSSKEDSTPKFKNSWFCHDNIV-TCSRDG--SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 564 (1784)
Q Consensus 488 ~~~~s~~~~~~~~~~~~~~~~~~LV-SgS~DG--tIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~ 564 (1784)
+.|+ +....| .|.++|+.+++ ..++.
T Consensus 289 ---------------------~~I~F~Sdr~g~~~Iy~~dl~~g~------------------------------~~rlt 317 (419)
T PRK04043 289 ---------------------KRIVFVSDRLGYPNIFMKKLNSGS------------------------------VEQVV 317 (419)
T ss_pred ---------------------CEEEEEECCCCCceEEEEECCCCC------------------------------eEeCc
Confidence 3333 433444 45555655422 11111
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecC---------CeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCc--
Q 000251 565 PTPRGVNMIVWSLDNRFVLAAIMD---------CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK-- 633 (1784)
Q Consensus 565 ~h~~~VtsVafSPDG~~LaSgs~D---------GsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~-- 633 (1784)
.... ....|||||++|+..+.. ..|.+.|+.++... .+... .......|+|++..++++....+.
T Consensus 318 ~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~ 393 (419)
T PRK04043 318 FHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSA 393 (419)
T ss_pred cCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEE
Confidence 1111 124899999999876643 36888999888653 44433 223368899966555555443333
Q ss_pred EEEEeCCCCceEEEEeccCcce
Q 000251 634 TIVWDIWEGIPIRIYEISRFRL 655 (1784)
Q Consensus 634 IrIWDl~tG~~l~tl~~~~~~I 655 (1784)
|.+.++ +|.....+....+.+
T Consensus 394 L~~~~l-~g~~~~~l~~~~g~~ 414 (419)
T PRK04043 394 LGIIRL-NYNKSFLFPLKVGKI 414 (419)
T ss_pred EEEEec-CCCeeEEeecCCCcc
Confidence 556666 444444444333333
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00039 Score=80.14 Aligned_cols=140 Identities=15% Similarity=0.100 Sum_probs=90.1
Q ss_pred CCcEEEEEECCCCeEEEEEecC--CCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCC
Q 000251 290 DDRLVKIWSMETAYCLASCRGH--EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG 367 (1784)
Q Consensus 290 ~DGtIkIWDl~Tgk~l~tL~gH--~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~ 367 (1784)
++|+|..||..+|+.+....-- .....+. ..+++.+|++++.++.|..||..+|+.+..+.. ...+.......++
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~- 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGG- 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETT-
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeeccc-
Confidence 3789999999999999887531 1222222 233566788888999999999999998877764 2222111222222
Q ss_pred ccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEc
Q 000251 368 SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447 (1784)
Q Consensus 368 ~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWD 447 (1784)
.+++++.++.|..+|..+|+.+......... ... ....+.....+..++++..++.|..+|
T Consensus 78 ---~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~---------------~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d 138 (238)
T PF13360_consen 78 ---RVYVGTSDGSLYALDAKTGKVLWSIYLTSSP---------------PAG-VRSSSSPAVDGDRLYVGTSSGKLVALD 138 (238)
T ss_dssp ---EEEEEETTSEEEEEETTTSCEEEEEEE-SSC---------------TCS-TB--SEEEEETTEEEEEETCSEEEEEE
T ss_pred ---ccccccceeeeEecccCCcceeeeecccccc---------------ccc-cccccCceEecCEEEEEeccCcEEEEe
Confidence 5777778889999999999987763211100 000 111122222377888888899999999
Q ss_pred CCCC
Q 000251 448 ACKP 451 (1784)
Q Consensus 448 l~tg 451 (1784)
+.++
T Consensus 139 ~~tG 142 (238)
T PF13360_consen 139 PKTG 142 (238)
T ss_dssp TTTT
T ss_pred cCCC
Confidence 8663
|
... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00041 Score=80.02 Aligned_cols=213 Identities=13% Similarity=0.120 Sum_probs=111.8
Q ss_pred ceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCc
Q 000251 421 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 500 (1784)
Q Consensus 421 ~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~ 500 (1784)
+-.-++||||+.+||.+...|+|++||+...... ...+.. .....-...|..+.|....
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~--~~~~d~~~Aiagl~Fl~~~------------------ 103 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAM--SFPGDLSDAIAGLIFLEYK------------------ 103 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCccc--ccCCccccceeeeEeeccc------------------
Confidence 4568999999999999999999999999532110 111100 0001112345555554321
Q ss_pred cccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceec-cCCCCCeeEEEEcCCC
Q 000251 501 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI-LPTPRGVNMIVWSLDN 579 (1784)
Q Consensus 501 ~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l-~~h~~~VtsVafSPDG 579 (1784)
....| ...|++-.-+|.++-|-+..+... .+... ....+ .....+|++++++|..
T Consensus 104 ~s~~w--s~ELlvi~Y~G~L~Sy~vs~gt~q----~y~e~------------------hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 104 KSAQW--SYELLVINYRGQLRSYLVSVGTNQ----GYQEN------------------HSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred ccccc--ceeEEEEeccceeeeEEEEcccCC----cceee------------------EEEEecccCCCceeEEEEcCCC
Confidence 00111 124566666777776655321100 00000 01111 2246789999999999
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEE-EEEeCCC------cEEEEeCCCCceEEEEeccC
Q 000251 580 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIA-MSAGYDG------KTIVWDIWEGIPIRIYEISR 652 (1784)
Q Consensus 580 ~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lL-aSgs~DG------~IrIWDl~tG~~l~tl~~~~ 652 (1784)
++|++|+.... ..+. -.+....+++-.+-.+.+.+. ++...|+ +..+|.+-+.+.........
T Consensus 160 ~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 229 (282)
T PF15492_consen 160 RLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQ 229 (282)
T ss_pred CEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCC
Confidence 99888764321 0000 001111222222211122222 1111121 12344443322222212235
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 000251 653 FRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688 (1784)
Q Consensus 653 ~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~~~ 688 (1784)
..|..|.+||||+.||+...+|.|.+|++.+-...+
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~ 265 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQR 265 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhc
Confidence 579999999999999999999999999997754443
|
|
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.4e-06 Score=114.32 Aligned_cols=105 Identities=12% Similarity=0.330 Sum_probs=92.9
Q ss_pred CCCCChhhhHHHHHHHHHHHhhhcccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHH
Q 000251 1664 QPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVML 1743 (1784)
Q Consensus 1664 ~p~id~e~r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~ 1743 (1784)
.|.++.+.+-.. -+++.+...+..+++.|+|..+++...+|+||.+|+.||||+||.+.+.-+-|.+.++|..||++|+
T Consensus 1373 nplld~~d~v~~-~~~d~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~ 1451 (1563)
T KOG0008|consen 1373 NPLLDDDDQVAF-FILDNIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIY 1451 (1563)
T ss_pred CcccCccchhhH-hhhhhHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhc
Confidence 355666665555 7777777777888999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHH
Q 000251 1744 SNAESYFGRNTDLSTKIKRLSDLVTR 1769 (1784)
Q Consensus 1744 ~Na~~fN~~~s~i~~~a~~l~~~~~~ 1769 (1784)
.||..||++++.+.++|+++-++-+.
T Consensus 1452 ~n~~~~ng~e~~y~~k~~k~~ev~~~ 1477 (1563)
T KOG0008|consen 1452 VNSVEYNGAESAYTKKARKIGEVGLA 1477 (1563)
T ss_pred ccceeecCccccccHHHHHHHHHHHH
Confidence 99999999999999999887665443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.13 E-value=6e-06 Score=67.69 Aligned_cols=39 Identities=21% Similarity=0.639 Sum_probs=37.2
Q ss_pred ceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEE
Q 000251 260 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS 298 (1784)
Q Consensus 260 ~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWD 298 (1784)
++++++|.+|.+.|++|+|+|++.+||+|+.|++|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367899999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0004 Score=80.01 Aligned_cols=221 Identities=14% Similarity=0.097 Sum_probs=133.7
Q ss_pred CCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCC
Q 000251 378 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 457 (1784)
Q Consensus 378 DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~ 457 (1784)
+|+|..||..+|+.+....+... .....+.. .+++..+++++.++.|..||..+++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~------------------~~~~~~~~-~~~~~~v~~~~~~~~l~~~d~~tG~----- 57 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG------------------IGGPVATA-VPDGGRVYVASGDGNLYALDAKTGK----- 57 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS------------------CSSEEETE-EEETTEEEEEETTSEEEEEETTTSE-----
T ss_pred CCEEEEEECCCCCEEEEEECCCC------------------CCCccceE-EEeCCEEEEEcCCCEEEEEECCCCC-----
Confidence 68899999999988777643110 11122222 2255667777889999999997643
Q ss_pred CCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccc
Q 000251 458 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 537 (1784)
Q Consensus 458 ~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w 537 (1784)
.+..... ...+..... ..++.+++++.++.+..+|..+++. .|
T Consensus 58 ----~~W~~~~-~~~~~~~~~---------------------------~~~~~v~v~~~~~~l~~~d~~tG~~-----~W 100 (238)
T PF13360_consen 58 ----VLWRFDL-PGPISGAPV---------------------------VDGGRVYVGTSDGSLYALDAKTGKV-----LW 100 (238)
T ss_dssp ----EEEEEEC-SSCGGSGEE---------------------------EETTEEEEEETTSEEEEEETTTSCE-----EE
T ss_pred ----EEEEeec-cccccceee---------------------------ecccccccccceeeeEecccCCcce-----ee
Confidence 3333222 111111101 1135777777888999999887663 23
Q ss_pred cc-cccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCC-----
Q 000251 538 TQ-AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES----- 611 (1784)
Q Consensus 538 ~~-~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~----- 611 (1784)
.. .... .............++..++++..++.|..+|+.+|+.+.........
T Consensus 101 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 159 (238)
T PF13360_consen 101 SIYLTSS---------------------PPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPI 159 (238)
T ss_dssp EEEE-SS---------------------CTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred eeccccc---------------------cccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcce
Confidence 21 1000 00001111122223788888888999999999999999888764422
Q ss_pred -----e-EEEEEecCCCcEEEEEeCCCc-EEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000251 612 -----T-YVLDVHPFNPRIAMSAGYDGK-TIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 684 (1784)
Q Consensus 612 -----V-tsLafSPdd~~lLaSgs~DG~-IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sG 684 (1784)
+ ..+.+. ++ .++.++.++. +.+ |+.+|+.+.... ...+.. ....++..|++++.++.|.+||+.+|
T Consensus 160 ~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 160 SSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp EEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTT
T ss_pred eeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCC
Confidence 1 222222 34 4555666775 555 999999775333 222222 25678888888889999999999998
Q ss_pred ccc
Q 000251 685 ESQ 687 (1784)
Q Consensus 685 e~~ 687 (1784)
+..
T Consensus 233 ~~~ 235 (238)
T PF13360_consen 233 KVV 235 (238)
T ss_dssp EEE
T ss_pred CEE
Confidence 753
|
... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0009 Score=82.68 Aligned_cols=302 Identities=15% Similarity=0.094 Sum_probs=156.9
Q ss_pred CCCCCEEEEEc---------CCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEE
Q 000251 279 DRSGRYVITGS---------DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 349 (1784)
Q Consensus 279 SPDG~~LATGS---------~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~ 349 (1784)
||||++++... ..+.+.|||+.+++....... ...+....|||+|+.||... ++.|.++++.++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 68898888742 357899999999876544333 67889999999999999886 57899999887754432
Q ss_pred ec-CC----------------CCceEEEEecCCCCccEEEEEE-eCCCcEEEEecCCCcccceeecCCCCCcccCCCCCC
Q 000251 350 LR-GH----------------TAAVTAIAFSPRPGSVYQLLSS-SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 411 (1784)
Q Consensus 350 L~-gH----------------~~~VtsLafSPdg~~~~~LaSg-s~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~ 411 (1784)
.. |. -+.-.++-||||++ +|+.. -.+..|..+.+-.......
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~---~la~~~~d~~~v~~~~~~~~~~~~~----------------- 138 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSK---YLAFLRFDEREVPEYPLPDYSPPDS----------------- 138 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSS---EEEEEEEE-TTS-EEEEEEESSSTE-----------------
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCC---EEEEEEECCcCCceEEeeccCCccc-----------------
Confidence 21 20 11235688999987 44443 4445555544321110000
Q ss_pred CCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceee---ecCCCCCceEEEEccCccccccc
Q 000251 412 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV---LSGHENDVNYVQFSGCAVASRFS 488 (1784)
Q Consensus 412 ~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~---l~gH~~~V~sLafSpdglas~~~ 488 (1784)
.--.+..+.+-.-|.-... -.+.|+++.+++.. .+.. +..-..-+..+.|.+++
T Consensus 139 ------~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~-------~~~~~~~~~~~~~yl~~v~W~~d~------ 195 (353)
T PF00930_consen 139 ------QYPEVESIRYPKAGDPNPR----VSLFVVDLASGKTT-------ELDPPNSLNPQDYYLTRVGWSPDG------ 195 (353)
T ss_dssp ------SS-EEEEEE--BTTS---E----EEEEEEESSSTCCC-------EE---HHHHTSSEEEEEEEEEETT------
T ss_pred ------cCCcccccccCCCCCcCCc----eEEEEEECCCCcEE-------EeeeccccCCCccCcccceecCCC------
Confidence 0012344444333322211 13667788654321 1111 12335567788888775
Q ss_pred ccCCCCCCCCCccccccccCCeEE--EEeCCC---cEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceec
Q 000251 489 LADSSKEDSTPKFKNSWFCHDNIV--TCSRDG---SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 563 (1784)
Q Consensus 489 ~~~s~~~~~~~~~~~~~~~~~~LV--SgS~DG---tIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l 563 (1784)
..|+ ....+. .+.++|+.++........ ..
T Consensus 196 --------------------~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e-------------------------~~ 230 (353)
T PF00930_consen 196 --------------------KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE-------------------------TS 230 (353)
T ss_dssp --------------------EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE-------------------------ES
T ss_pred --------------------cEEEEEEcccCCCEEEEEEEECCCCceeEEEEe-------------------------cC
Confidence 2122 222222 244455554321111000 00
Q ss_pred cCCCCCeeEEEEc-CCCC-EEEEEecCCe--EEEEECCCCceEEEEecCCCCeEE-EEEecCCCcEEEEEeCCC----cE
Q 000251 564 LPTPRGVNMIVWS-LDNR-FVLAAIMDCR--ICVWNAADGSLVHSLTGHTESTYV-LDVHPFNPRIAMSAGYDG----KT 634 (1784)
Q Consensus 564 ~~h~~~VtsVafS-PDG~-~LaSgs~DGs--I~VWDl~tgklv~~L~gH~~~Vts-LafSPdd~~lLaSgs~DG----~I 634 (1784)
.+--.....+.|. +++. +|.....+|. |++++...+. ...+....-.|.. +.+.+.++.+.++|..++ .|
T Consensus 231 ~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~l 309 (353)
T PF00930_consen 231 DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHL 309 (353)
T ss_dssp SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEE
T ss_pred CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEE
Confidence 0001112244443 5554 4444446664 6666766555 4456555556754 677886777777777633 45
Q ss_pred EEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEe
Q 000251 635 IVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSD 671 (1784)
Q Consensus 635 rIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs 671 (1784)
..-++..+..+..+......-..+.|||||++++...
T Consensus 310 Y~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 310 YRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred EEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 5556652444555553333336899999999998653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.06 E-value=4e-05 Score=86.21 Aligned_cols=111 Identities=20% Similarity=0.342 Sum_probs=80.6
Q ss_pred CeeEEEEcCCCC-EEEEEecCCeEEEEECCCCce-EEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEE
Q 000251 569 GVNMIVWSLDNR-FVLAAIMDCRICVWNAADGSL-VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 646 (1784)
Q Consensus 569 ~VtsVafSPDG~-~LaSgs~DGsI~VWDl~tgkl-v~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~ 646 (1784)
.|++++-+|..+ .+++|+.||.+-+||.++... +..+..|..+|+.+-|||.++..|++++.||.+.-||..+ +.+.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~l~ 259 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TFLS 259 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC-ceEE
Confidence 388888888655 456788999999999988743 3456789999999999999999999999999999999863 2221
Q ss_pred EEe----------------------ccCcceEEE-EEcCCCCEEEEEeCCCeEEEEE
Q 000251 647 IYE----------------------ISRFRLVDG-KFSPDGASIILSDDVGQLYILN 680 (1784)
Q Consensus 647 tl~----------------------~~~~~Itsl-afSPDGk~LAsgs~DG~I~IWd 680 (1784)
.-. .-.....++ .|.--|..|++|++-+.|++.+
T Consensus 260 i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 260 ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 100 000111111 4445578888888888888775
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0032 Score=81.20 Aligned_cols=319 Identities=11% Similarity=0.057 Sum_probs=167.0
Q ss_pred CCEEEEEcCCcEEEEEECCCCeEEEEEecCCC------CeE--EEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCC
Q 000251 282 GRYVITGSDDRLVKIWSMETAYCLASCRGHEG------DIT--DLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGH 353 (1784)
Q Consensus 282 G~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~------~Vt--sLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH 353 (1784)
+..|..++.++.|.-.|..+|+.+-.+..... .+. .+++. ++..++.++.++.|..+|..+|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44666777789999999999998877653322 110 11111 2267888888999999999999998776533
Q ss_pred CCc-----e-EEEEecCCCCccEEEEEEe---------CCCcEEEEecCCCcccceeecCCCCCcccCCCCCCC-CCCCC
Q 000251 354 TAA-----V-TAIAFSPRPGSVYQLLSSS---------DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS-SSAGP 417 (1784)
Q Consensus 354 ~~~-----V-tsLafSPdg~~~~~LaSgs---------~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~-~s~~~ 417 (1784)
... + .+..+.. . .++.++ .+|.|..+|..+|+.+-+........... ...... .....
T Consensus 140 ~~~~~~~~i~ssP~v~~--~---~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~-~~~~~~~~~~~~ 213 (488)
T cd00216 140 DQVPPGYTMTGAPTIVK--K---LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAF-PTWGPDRQMWGP 213 (488)
T ss_pred CCcCcceEecCCCEEEC--C---EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCC-CCCCCCcceecC
Confidence 221 1 1112222 2 454543 46889999999998777664421110000 000000 00000
Q ss_pred CCCce-EEEEECCCCCEEEEeeCCc------------------eEEEEcCCCCCCCCCCCCCcceeeecCCCCCceE--E
Q 000251 418 QSHQI-FCCAFNANGTVFVTGSSDT------------------LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNY--V 476 (1784)
Q Consensus 418 h~~~V-~sLafSpdG~~LasGs~DG------------------~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~s--L 476 (1784)
....+ ...++.+.+..+++++.++ .|.-+|+.+++. ......-...+.. .
T Consensus 214 ~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~---------~W~~~~~~~~~~~~~~ 284 (488)
T cd00216 214 GGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV---------KWFYQTTPHDLWDYDG 284 (488)
T ss_pred CCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE---------EEEeeCCCCCCccccc
Confidence 01111 1345555566777777665 577777765432 2211100000000 0
Q ss_pred EEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCC
Q 000251 477 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 556 (1784)
Q Consensus 477 afSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~ 556 (1784)
...|.- .... .... .....++.++.+|.+...|..+++. .|.....
T Consensus 285 ~s~p~~-------~~~~------~~~g--~~~~~V~~g~~~G~l~ald~~tG~~-----~W~~~~~-------------- 330 (488)
T cd00216 285 PNQPSL-------ADIK------PKDG--KPVPAIVHAPKNGFFYVLDRTTGKL-----ISARPEV-------------- 330 (488)
T ss_pred CCCCeE-------Eecc------ccCC--CeeEEEEEECCCceEEEEECCCCcE-----eeEeEee--------------
Confidence 000000 0000 0000 0013577888999999999998763 2322111
Q ss_pred CCCceeccCCCCCeeEEEEcCCCCEE-----------------EEEecCCeEEEEECCCCceEEEEecCC--------CC
Q 000251 557 GGPRQRILPTPRGVNMIVWSLDNRFV-----------------LAAIMDCRICVWNAADGSLVHSLTGHT--------ES 611 (1784)
Q Consensus 557 ~~~~~~l~~h~~~VtsVafSPDG~~L-----------------aSgs~DGsI~VWDl~tgklv~~L~gH~--------~~ 611 (1784)
...++.+| +..+ .....+|.|.-.|+.+|+.+....... ..
T Consensus 331 -------------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~ 396 (488)
T cd00216 331 -------------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFP 396 (488)
T ss_pred -------------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCc
Confidence 00011111 1111 112246778888888888887665321 11
Q ss_pred e--EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceEE--EEEcCCCCEEE
Q 000251 612 T--YVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVD--GKFSPDGASII 668 (1784)
Q Consensus 612 V--tsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~Its--lafSPDGk~LA 668 (1784)
. ..++. .+.+|+.++.||.|+.+|..+|+.+..+... ..+.. +.|..+|++.+
T Consensus 397 ~~~~~~~~---~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~-~~~~a~P~~~~~~g~~yv 453 (488)
T cd00216 397 HWGGSLAT---AGNLVFAGAADGYFRAFDATTGKELWKFRTP-SGIQATPMTYEVNGKQYV 453 (488)
T ss_pred ccCcceEe---cCCeEEEECCCCeEEEEECCCCceeeEEECC-CCceEcCEEEEeCCEEEE
Confidence 1 11222 3356777889999999999999999998753 33332 34455664433
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.2e-05 Score=93.14 Aligned_cols=156 Identities=19% Similarity=0.200 Sum_probs=114.6
Q ss_pred CCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCe
Q 000251 431 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 510 (1784)
Q Consensus 431 G~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~ 510 (1784)
|-.+++| .+..|-+-++.++.. ..-...++|.+++|...+ +.
T Consensus 225 gyhfs~G-~sqqv~L~nvetg~~-----------qsf~sksDVfAlQf~~s~--------------------------nL 266 (425)
T KOG2695|consen 225 GYHFSVG-LSQQVLLTNVETGHQ-----------QSFQSKSDVFALQFAGSD--------------------------NL 266 (425)
T ss_pred eeeeccc-ccceeEEEEeecccc-----------cccccchhHHHHHhcccC--------------------------Ce
Confidence 3343344 456678888876421 112256678888887643 68
Q ss_pred EEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcC-CCCEEEEEecCC
Q 000251 511 IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-DNRFVLAAIMDC 589 (1784)
Q Consensus 511 LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP-DG~~LaSgs~DG 589 (1784)
+..|...|.|..+|++.+.. ...-.....-|...|+++..-. ++++|++.+++|
T Consensus 267 v~~GcRngeI~~iDLR~rnq-------------------------G~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~g 321 (425)
T KOG2695|consen 267 VFNGCRNGEIFVIDLRCRNQ-------------------------GNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTG 321 (425)
T ss_pred eEecccCCcEEEEEeeeccc-------------------------CCCcceEEEEcCcchhhhhhhccccceEeeccCcC
Confidence 99999999999999996321 1122233456888899887766 889999999999
Q ss_pred eEEEEECCCCce---EEEEecCCCCeEEEEE--ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEec
Q 000251 590 RICVWNAADGSL---VHSLTGHTESTYVLDV--HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI 650 (1784)
Q Consensus 590 sI~VWDl~tgkl---v~~L~gH~~~VtsLaf--SPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~ 650 (1784)
+|++||.+.-++ +..+.||.+.-.-+-+ .+ ...+++++|.|...+||.+..|.++.++.-
T Consensus 322 kikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 322 KIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecccCceeeccCC
Confidence 999999987666 8999999765444444 34 446778899999999999999999988863
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0036 Score=83.29 Aligned_cols=260 Identities=12% Similarity=0.138 Sum_probs=146.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEec----C
Q 000251 312 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA----R 387 (1784)
Q Consensus 312 ~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl----~ 387 (1784)
.+.|.++.|.-+..-|+.+...|.|.+-|..+.... ....-...|.+++|+||.. .++..+..++|.+-.- -
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee---~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEE---LLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCc---EEEEEeCCcEEEEEeccccch
Confidence 368999999999999999999999999988766432 2223457899999999987 7888887777776432 1
Q ss_pred CCccc--------ceeec--CCCCCcccCCCCCC-------CCCC---CCCCCceEEEEECCCCCEEEEe-----eCCce
Q 000251 388 YSQFS--------PRIYI--PRPSDAVAGRNMAP-------SSSA---GPQSHQIFCCAFNANGTVFVTG-----SSDTL 442 (1784)
Q Consensus 388 tg~~l--------~~i~l--~~~~~~~~g~~~~~-------~~s~---~~h~~~V~sLafSpdG~~LasG-----s~DG~ 442 (1784)
.-+.+ ..+.. .+......|..... .... ......=++|+|--||.++|+. ..-..
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 11111 00000 00000000000000 0000 0012223469999999999983 33379
Q ss_pred EEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEE---eCCCc
Q 000251 443 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGS 519 (1784)
Q Consensus 443 IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSg---S~DGt 519 (1784)
|+|||.. +.... .-....+.-.+++|-|.| ..+++. +.|+.
T Consensus 224 irV~drE-g~Lns---------~se~~~~l~~~LsWkPsg--------------------------s~iA~iq~~~sd~~ 267 (1265)
T KOG1920|consen 224 IRVYDRE-GALNS---------TSEPVEGLQHSLSWKPSG--------------------------SLIAAIQCKTSDSD 267 (1265)
T ss_pred EEEeccc-chhhc---------ccCcccccccceeecCCC--------------------------CeEeeeeecCCCCc
Confidence 9999985 22111 111122333567888865 345443 34667
Q ss_pred EEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE---EecCCeEEEEEC
Q 000251 520 AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA---AIMDCRICVWNA 596 (1784)
Q Consensus 520 IrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS---gs~DGsI~VWDl 596 (1784)
|.++.-...+ + +............|..++|+.++..||+ ......|++|-+
T Consensus 268 IvffErNGL~-h-------------------------g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 268 IVFFERNGLR-H-------------------------GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred EEEEecCCcc-c-------------------------cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEe
Confidence 8888654311 1 0011111112233899999999999988 445556999998
Q ss_pred CCCc--eEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000251 597 ADGS--LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639 (1784)
Q Consensus 597 ~tgk--lv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl 639 (1784)
.+.. +.+.+.-..... +.|+|.....+..-..+|.+.++++
T Consensus 322 ~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 322 GNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred cCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 7753 223333222222 7788844444433345555555543
|
|
| >cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.3e-06 Score=87.82 Aligned_cols=80 Identities=6% Similarity=0.009 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHHhhhccccccccccccccc--ccCCCccccCCCCCCHHHHHHHhhhc-------cCCCHHHHHHHHHH
Q 000251 1671 NRNKLLSAFAKLEQSANRVQDQYGVQKLKQV--SQKTNFTNRFPVPLSLDVIQSRLENN-------YYRGLEAVKHDIAV 1741 (1784)
Q Consensus 1671 ~r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~y~~~i~~Pmdl~tI~~RLen~-------~Yr~~~~~~~Dv~~ 1741 (1784)
...++++.+.++.. +..+++|..+++. ..+|||+++|++||||+||+++|++. +|---+....++.+
T Consensus 4 ~~~~~l~~l~~~~~----~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~ 79 (114)
T cd05494 4 ALERVLRELKRHRR----NEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQID 79 (114)
T ss_pred HHHHHHHHHHHhhh----CCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccc
Confidence 34555555555533 6688999999988 88999999999999999999999986 67666667777888
Q ss_pred HHHhhhhhcCCCc
Q 000251 1742 MLSNAESYFGRNT 1754 (1784)
Q Consensus 1742 i~~Na~~fN~~~s 1754 (1784)
++.||..||...-
T Consensus 80 ~~~~~~~~~~~~~ 92 (114)
T cd05494 80 DEGRRSPSNIYAV 92 (114)
T ss_pred cccccCcccccch
Confidence 8888887776543
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0025 Score=74.51 Aligned_cols=194 Identities=12% Similarity=0.043 Sum_probs=118.2
Q ss_pred EEEECC-CCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEc-CCCCEEEEEeCCCEEEEEECCCCCeeEEecC
Q 000251 275 CAIFDR-SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVS-SNNALVASASNDCIIRVWRLPDGLPISVLRG 352 (1784)
Q Consensus 275 ~VaFSP-DG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafS-pDg~lLASGS~DGtIrVWDl~tgk~i~~L~g 352 (1784)
+++|.+ +|.++++--..+.|..|+..++.... +.... ...+++. +++.+ +.+...+ +.++|+.+++....+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l-~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRL-YVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEE-EEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEE-EEEEcCc-eEEEecCCCcEEEEeec
Confidence 578998 77778887788999999999886543 22222 7777887 66554 4444444 55669988854433322
Q ss_pred -----CCCceEEEEecCCCCccEEEEEEeCC--------CcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000251 353 -----HTAAVTAIAFSPRPGSVYQLLSSSDD--------GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 419 (1784)
Q Consensus 353 -----H~~~VtsLafSPdg~~~~~LaSgs~D--------GtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~ 419 (1784)
.....+.+++.|+|. +.++.... |.|..++.. ++...... .-
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~---ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~---------------------~~ 133 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGN---LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD---------------------GL 133 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS----EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE---------------------EE
T ss_pred cCCCcccCCCceEEEcCCCC---EEEEecCCCccccccccceEEECCC-CeEEEEec---------------------Cc
Confidence 345688999999986 45554433 456666665 33221110 12
Q ss_pred CceEEEEECCCCCEEE-EeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCC
Q 000251 420 HQIFCCAFNANGTVFV-TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 498 (1784)
Q Consensus 420 ~~V~sLafSpdG~~La-sGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~ 498 (1784)
...+.|+|+|+++.|+ +-+..+.|..|++...... ......+..+....+....+++..+|
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~g~pDG~~vD~~G---------------- 195 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE--LSNRRVFIDFPGGPGYPDGLAVDSDG---------------- 195 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC--EEEEEEEEE-SSSSCEEEEEEEBTTS----------------
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccc--eeeeeeEEEcCCCCcCCCcceEcCCC----------------
Confidence 3367999999998765 5566788988888532110 00011111222222335677777665
Q ss_pred CccccccccCCeEEEEeCCCcEEEEeCC
Q 000251 499 PKFKNSWFCHDNIVTCSRDGSAIIWIPR 526 (1784)
Q Consensus 499 ~~~~~~~~~~~~LVSgS~DGtIrIWDl~ 526 (1784)
++.++....+.|.+++..
T Consensus 196 ----------~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 196 ----------NLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp -----------EEEEEETTTEEEEEETT
T ss_pred ----------CEEEEEcCCCEEEEECCC
Confidence 566666778899999876
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0017 Score=86.18 Aligned_cols=265 Identities=11% Similarity=0.106 Sum_probs=141.5
Q ss_pred CCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCE
Q 000251 354 TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV 433 (1784)
Q Consensus 354 ~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~ 433 (1784)
...|.++.|..+.. .++.+...|.|.+-|..+...... +.-...|.+++|+||+.+
T Consensus 68 d~~i~s~~fl~d~~---~i~v~~~~G~iilvd~et~~~eiv---------------------g~vd~GI~aaswS~Dee~ 123 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTN---SICVITALGDIILVDPETLELEIV---------------------GNVDNGISAASWSPDEEL 123 (1265)
T ss_pred CcceEEEEEecccc---eEEEEecCCcEEEEcccccceeee---------------------eeccCceEEEeecCCCcE
Confidence 36899999999886 788888899999988876542211 123566999999999999
Q ss_pred EEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEE-------EEccCcc-cccccccC-----CCCCCCCCc
Q 000251 434 FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV-------QFSGCAV-ASRFSLAD-----SSKEDSTPK 500 (1784)
Q Consensus 434 LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sL-------afSpdgl-as~~~~~~-----s~~~~~~~~ 500 (1784)
++..+..+++.+-.- +...... +.+..-....+....+ +|..... ........ ........+
T Consensus 124 l~liT~~~tll~mT~-~f~~i~E----~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~ 198 (1265)
T KOG1920|consen 124 LALITGRQTLLFMTK-DFEPIAE----KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHK 198 (1265)
T ss_pred EEEEeCCcEEEEEec-cccchhc----cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCC
Confidence 999988887765432 1000000 0000000000000111 1111000 00000000 000011122
Q ss_pred cccccccCC-eEEEE----eCC-CcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEE
Q 000251 501 FKNSWFCHD-NIVTC----SRD-GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 574 (1784)
Q Consensus 501 ~~~~~~~~~-~LVSg----S~D-GtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 574 (1784)
..-.|.++. ++++. ..+ ..|+|||-.. ... . .-.....--.+++
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~Ln-------------s----------------~se~~~~l~~~Ls 248 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDREG-ALN-------------S----------------TSEPVEGLQHSLS 248 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEecccc-hhh-------------c----------------ccCccccccccee
Confidence 223454433 55542 233 7899998661 100 0 0001122335789
Q ss_pred EcCCCCEEEEE---ecCCeEEEEECCCCce----EEEEecCCCCeEEEEEecCCCcEEEE---EeCCCcEEEEeCCCCce
Q 000251 575 WSLDNRFVLAA---IMDCRICVWNAADGSL----VHSLTGHTESTYVLDVHPFNPRIAMS---AGYDGKTIVWDIWEGIP 644 (1784)
Q Consensus 575 fSPDG~~LaSg---s~DGsI~VWDl~tgkl----v~~L~gH~~~VtsLafSPdd~~lLaS---gs~DG~IrIWDl~tG~~ 644 (1784)
|-|.|..+++- +.|+.|.+|.- +|-. ...+......|..++|+. ++.+|+. ......|++|-+.+-.-
T Consensus 249 WkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 249 WKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred ecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecC-CCCceeeeecccccceEEEEEecCeEE
Confidence 99999999884 35567888884 3432 222333344589999998 6667665 44445599999876532
Q ss_pred --EEEEeccCcceEEEEEcCCC-CEEEEEeCCCeEEEEEC
Q 000251 645 --IRIYEISRFRLVDGKFSPDG-ASIILSDDVGQLYILNT 681 (1784)
Q Consensus 645 --l~tl~~~~~~ItslafSPDG-k~LAsgs~DG~I~IWdl 681 (1784)
...+....... +.|+|-. ..|.+...+|.+.++++
T Consensus 327 YLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 327 YLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred EEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 22222122222 8899854 34444456777777765
|
|
| >KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.2e-05 Score=101.50 Aligned_cols=109 Identities=19% Similarity=0.227 Sum_probs=94.2
Q ss_pred CCCCCChhhhHHHHHHHHHHHhhhcccc-cc-cccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHH
Q 000251 1663 EQPRIDDDNRNKLLSAFAKLEQSANRVQ-DQ-YGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIA 1740 (1784)
Q Consensus 1663 ~~p~id~e~r~kl~~~~~~l~~~~~~~~-~~-~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~ 1740 (1784)
..|.+++....++..+|..+.......- .. -.|.++......|+||.+|..||.|..|++|+..+-|++++.|.-|+.
T Consensus 45 d~p~i~~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~ 124 (629)
T KOG1827|consen 45 DSPVIDPPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFL 124 (629)
T ss_pred CccccChHHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHH
Confidence 5566777778888888877766553322 22 367888888899999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCcHHHHHHHHHHHHHHHHH
Q 000251 1741 VMLSNAESYFGRNTDLSTKIKRLSDLVTRTL 1771 (1784)
Q Consensus 1741 ~i~~Na~~fN~~~s~i~~~a~~l~~~~~~~i 1771 (1784)
+|++||++||.+++.+++++..|++.|....
T Consensus 125 lm~ena~~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 125 LMTENARLYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred HHHHHHHHhcCcchhhhhhhhhhhcchhhhh
Confidence 9999999999999999999999999998854
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00029 Score=83.63 Aligned_cols=94 Identities=18% Similarity=0.156 Sum_probs=82.6
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEE
Q 000251 294 VKIWSMETAYCLASCRGHEGDITDLAVSSNNA-LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL 372 (1784)
Q Consensus 294 IkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~-lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~L 372 (1784)
|++.+..+.+...-+.+|...|.+|+|||... +|..++.+..|.|.|+++...+..+..| ..+++++|.-+.. ++|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~--h~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDER--HVI 251 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCc--cee
Confidence 77777777777777788999999999999877 7889999999999999999988888877 8999999998875 589
Q ss_pred EEEeCCCcEEEEecCCCc
Q 000251 373 LSSSDDGTCRIWDARYSQ 390 (1784)
Q Consensus 373 aSgs~DGtIrIWDl~tg~ 390 (1784)
..|...|.|.|||++...
T Consensus 252 YaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EEeccCceEEEEEccCCC
Confidence 999999999999998654
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00014 Score=82.07 Aligned_cols=197 Identities=14% Similarity=0.173 Sum_probs=116.9
Q ss_pred EEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEE------------EEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEE
Q 000251 273 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLA------------SCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 340 (1784)
Q Consensus 273 Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~------------tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWD 340 (1784)
|+.+.|+-+ ..|+++..++.+......++.+.. .+..|.++-.+-+.+--++.++++..||.+.+.+
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 555556543 356666666666666555444332 2223333333333344567899999999999998
Q ss_pred CCCCCee-EEecCCCCceEEEEecCCCCccEEEEEEeCCC------cEEEEecCCCcccceeecCCCCCcccCCCCCCCC
Q 000251 341 LPDGLPI-SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG------TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 413 (1784)
Q Consensus 341 l~tgk~i-~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DG------tIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~ 413 (1784)
.+.-..+ ..+..-...-.+.++...+. ++.+..=| ..++|+++...... .
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~----~i~s~~~g~~n~~d~~~a~~~~p~~t~~-------------------~ 174 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGN----SILSGGCGNWNAQDNFYANTLDPIKTLI-------------------P 174 (319)
T ss_pred chHHHhhhhhcccccccccccceeeccc----EEecCCcceEeeccceeeeccccccccc-------------------c
Confidence 7542111 11111111111222222222 23322222 34445443221110 0
Q ss_pred CCCCCCCceEEEEECCCC-CEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCC
Q 000251 414 SAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 492 (1784)
Q Consensus 414 s~~~h~~~V~sLafSpdG-~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s 492 (1784)
.. .....|.+++-+|.. .++++|+.||.+.+||++.. ..+...+..|...|+.+.|+|..
T Consensus 175 ~~-~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--------~~p~S~l~ahk~~i~eV~FHpk~---------- 235 (319)
T KOG4714|consen 175 SK-KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--------AMPVSLLKAHKAEIWEVHFHPKN---------- 235 (319)
T ss_pred cc-cccccchhhhCCcccccEEEEecCCCeEEEEEcccc--------cchHHHHHHhhhhhhheeccCCC----------
Confidence 00 112238899999854 57788889999999999864 33566788999999999999875
Q ss_pred CCCCCCCccccccccCCeEEEEeCCCcEEEEeCCC
Q 000251 493 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 527 (1784)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t 527 (1784)
++.|++++.||.+..||..+
T Consensus 236 ---------------p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 236 ---------------PEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ---------------chheeEecCCCcEEEEcCCC
Confidence 57999999999999999885
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.7e-05 Score=63.82 Aligned_cols=39 Identities=38% Similarity=0.708 Sum_probs=37.2
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEE
Q 000251 302 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 340 (1784)
Q Consensus 302 gk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWD 340 (1784)
|+++.++.+|.+.|++|+|+|++.+|++|+.|+.|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.021 Score=64.96 Aligned_cols=109 Identities=13% Similarity=0.022 Sum_probs=78.8
Q ss_pred CCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEE
Q 000251 282 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 361 (1784)
Q Consensus 282 G~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLa 361 (1784)
..+++.|+..+.++--|..+|..+..-. -...|.+-+.- -|.+++.|+..|.+.+.+..+|..+..+.....-=....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4577888888999999999998776532 12233333322 477899999999999999999988777654322222234
Q ss_pred ecCCCCccEEEEEEeCCCcEEEEecCCCccccee
Q 000251 362 FSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 395 (1784)
Q Consensus 362 fSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i 395 (1784)
..+++. ++..|+.|++....|..+..++...
T Consensus 101 ~d~~~g---lIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 101 CDFDGG---LIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred EcCCCc---eEEEecCCCcEEEecccccceEEec
Confidence 456665 8999999999999999987766554
|
|
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.1e-06 Score=109.73 Aligned_cols=92 Identities=17% Similarity=0.262 Sum_probs=83.4
Q ss_pred ccccccccccccccc--cCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHH
Q 000251 1688 RVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSD 1765 (1784)
Q Consensus 1688 ~~~~~~~~~~~~~~~--~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s~i~~~a~~l~~ 1765 (1784)
.+..+|+|..++... ..|+||.+|+.|||++||++||+|+||....+++.|+..+|+||++||.+..+++.+++.+++
T Consensus 6 ~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~ 85 (640)
T KOG1474|consen 6 KHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEK 85 (640)
T ss_pred cccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccchh
Confidence 456788888888743 459999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcc
Q 000251 1766 LVTRTLSSLKAPQF 1779 (1784)
Q Consensus 1766 ~~~~~i~~~~~~~~ 1779 (1784)
.|.+++..++....
T Consensus 86 ~~~~~~~~~~~~~~ 99 (640)
T KOG1474|consen 86 LFPKKLRSMPSDEE 99 (640)
T ss_pred hccccccccccccc
Confidence 99999888776443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0018 Score=76.82 Aligned_cols=234 Identities=15% Similarity=0.091 Sum_probs=143.5
Q ss_pred CeeEEEEcC-CCCEEEEEecCCe-EEEEECCCCceEEEEecCCCCeE--EEEEecCCCcEEEEE-----eCCCcEEEEeC
Q 000251 569 GVNMIVWSL-DNRFVLAAIMDCR-ICVWNAADGSLVHSLTGHTESTY--VLDVHPFNPRIAMSA-----GYDGKTIVWDI 639 (1784)
Q Consensus 569 ~VtsVafSP-DG~~LaSgs~DGs-I~VWDl~tgklv~~L~gH~~~Vt--sLafSPdd~~lLaSg-----s~DG~IrIWDl 639 (1784)
....++.+| .+..++.+-.-|. +.+||..+|+..+.+....+.-+ ..+||+ ++++|++. ...|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence 345678888 5566666766665 78999999999887765444322 367999 55555554 34689999999
Q ss_pred C-CCceEEEEeccCcceEEEEEcCCCCEEEEEeC------------------CCeEEEEECCCCccccccccce-eecCC
Q 000251 640 W-EGIPIRIYEISRFRLVDGKFSPDGASIILSDD------------------VGQLYILNTGQGESQKDAKYDQ-FFLGD 699 (1784)
Q Consensus 640 ~-tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~------------------DG~I~IWdl~sGe~~~~~~~~~-~fs~D 699 (1784)
. .-+.+..+..+.-....+.+.|||+.|+++.. +-.|...|..+|+.+....... .-...
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 8 56778888877667778999999988888621 1245667777777665422111 11123
Q ss_pred CcceEEccCCceeec-ccccccCcCCCCCcccCC--CC----CCCCCcchhhhhcccccccceEECCCCCeEEEeeCCCC
Q 000251 700 YRPLVQDTYGNVLDQ-ETQLAPHRRNLQDPLCDS--AM----IPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSL 772 (1784)
Q Consensus 700 ~r~Lv~d~~g~vld~-~tql~phl~~l~~~L~D~--~~----~p~p~~~Q~l~~~rr~~v~~iAfSPDG~~LAvg~d~s~ 772 (1784)
-|.|..+..|.|+-. +-+-.+. ..++++.-. +. .+.|+.. ...-...+-+||++++|.++|+. ...
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~--~~~PLva~~~~g~~~~~~~~p~~~---~~~l~~Y~gSIa~~~~g~~ia~t--sPr 237 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPG--DAPPLVALHRRGGALRLLPAPEEQ---WRRLNGYIGSIAADRDGRLIAVT--SPR 237 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCC--ccCCeEEEEcCCCcceeccCChHH---HHhhCCceEEEEEeCCCCEEEEE--CCC
Confidence 456667777766432 2221111 112222211 11 1111111 11122347799999999999888 234
Q ss_pred CCceEeecCCCcccccC-CCccccceeeeCCCCCcccCCC
Q 000251 773 DQGYQLQPLADLDVMID-PLPEFIDVMDWEPENEVQSDDN 811 (1784)
Q Consensus 773 ~~~v~lw~l~~~~~li~-plp~~i~~~~wsPDg~~ls~~~ 811 (1784)
...+.+|+..++..+.. ++++ ...++..+++-.++...
T Consensus 238 Gg~~~~~d~~tg~~~~~~~l~D-~cGva~~~~~f~~ssG~ 276 (305)
T PF07433_consen 238 GGRVAVWDAATGRLLGSVPLPD-ACGVAPTDDGFLVSSGQ 276 (305)
T ss_pred CCEEEEEECCCCCEeeccccCc-eeeeeecCCceEEeCCC
Confidence 56899999988886643 5666 45667777764444443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00028 Score=89.89 Aligned_cols=149 Identities=15% Similarity=0.197 Sum_probs=109.4
Q ss_pred CCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEE
Q 000251 270 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 349 (1784)
Q Consensus 270 ~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~ 349 (1784)
...++|++++ +++||.|+.+|.|++.+.. |.. .+...|+.. ..+|.+++||+.||+|.|-.+-+.+...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3568888887 6799999999999999976 333 444445443 56899999999999999999988887776
Q ss_pred ecCCCCceEEEEecCC--CCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEE
Q 000251 350 LRGHTAAVTAIAFSPR--PGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 427 (1784)
Q Consensus 350 L~gH~~~VtsLafSPd--g~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLaf 427 (1784)
+. ...++.+|+++|+ -.....+++||.-| +.++.-+=-..... .......+.|.++.|
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~------------------v~l~~~eG~I~~i~W 168 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS------------------VVLSEGEGPIHSIKW 168 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc------------------eeeecCccceEEEEe
Confidence 65 4578999999998 22234799999999 77764321110000 022345678999999
Q ss_pred CCCCCEEEEeeCCceEEEEcCCCC
Q 000251 428 NANGTVFVTGSSDTLARVWNACKP 451 (1784)
Q Consensus 428 SpdG~~LasGs~DG~IrVWDl~tg 451 (1784)
. |++||-+..+| |+|||+.+.
T Consensus 169 ~--g~lIAWand~G-v~vyd~~~~ 189 (846)
T KOG2066|consen 169 R--GNLIAWANDDG-VKVYDTPTR 189 (846)
T ss_pred c--CcEEEEecCCC-cEEEecccc
Confidence 5 77888888777 999999654
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.035 Score=72.20 Aligned_cols=352 Identities=11% Similarity=0.084 Sum_probs=175.2
Q ss_pred CCEEEEEcCCcEEEEEECCCCeEEEEEecCC-CCeE----------EEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEe
Q 000251 282 GRYVITGSDDRLVKIWSMETAYCLASCRGHE-GDIT----------DLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 350 (1784)
Q Consensus 282 G~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~-~~Vt----------sLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L 350 (1784)
+.+|++++.++.|.-.|..+|+.+-++.... ..+. .+++ .+..|+.++.|+.|...|..+|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777778889999999999887765211 1111 1222 2346777888999999999999988765
Q ss_pred cCC--C--CceEEEEecCCCCccEEEEEEe------CCCcEEEEecCCCcccceeecCCCCCcc-----------cCCCC
Q 000251 351 RGH--T--AAVTAIAFSPRPGSVYQLLSSS------DDGTCRIWDARYSQFSPRIYIPRPSDAV-----------AGRNM 409 (1784)
Q Consensus 351 ~gH--~--~~VtsLafSPdg~~~~~LaSgs------~DGtIrIWDl~tg~~l~~i~l~~~~~~~-----------~g~~~ 409 (1784)
... . ..+++--..-++ .|+++. .+|.|..+|..+|+.+-+.......... .+...
T Consensus 147 ~~~~~~~~~~~tssP~v~~g----~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t 222 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG----KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT 222 (527)
T ss_pred ccccccccccccCCcEEECC----EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence 421 1 112111111122 455543 2689999999999987665432211000 00000
Q ss_pred CCCCCCCCCCCceE-EEEECCCCCEEEEeeCCc----------------eEEEEcCCCCCCCCCCCCCcceeeecCCCCC
Q 000251 410 APSSSAGPQSHQIF-CCAFNANGTVFVTGSSDT----------------LARVWNACKPNTDDSDQPNHEIDVLSGHEND 472 (1784)
Q Consensus 410 ~~~~s~~~h~~~V~-sLafSpdG~~LasGs~DG----------------~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~ 472 (1784)
............++ .+++.+...+|+.+..+. .|.-.|++++ +..-.++...+.
T Consensus 223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG---------~~~W~~Q~~~~D 293 (527)
T TIGR03075 223 WPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTG---------KIKWHYQTTPHD 293 (527)
T ss_pred CCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccC---------CEEEeeeCCCCC
Confidence 00001111222333 457777777777666442 2333333332 122222222222
Q ss_pred ceEEEEccCcccccccccCCCCCCCCCccccccccC---CeEEEEeCCCcEEEEeCCCCCCCcc-----ccccccccccc
Q 000251 473 VNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH---DNIVTCSRDGSAIIWIPRSRRSHPK-----AARWTQAYHLK 544 (1784)
Q Consensus 473 V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~---~~LVSgS~DGtIrIWDl~t~~~~~~-----~~~w~~~~~l~ 544 (1784)
+....... .+.+......+ ..++.+..+|.+.+.|..+++.... ...|.......
T Consensus 294 ~wD~d~~~-----------------~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~ 356 (527)
T TIGR03075 294 EWDYDGVN-----------------EMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLK 356 (527)
T ss_pred CccccCCC-----------------CcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCC
Confidence 22111100 00000000111 4778999999999999998875311 01232221111
Q ss_pred CCCCCCCC-----CCCCCCCceeccCCCCCe--eEEEEcCCCCEEEEEec------------------------------
Q 000251 545 VPPPPMPP-----QPPRGGPRQRILPTPRGV--NMIVWSLDNRFVLAAIM------------------------------ 587 (1784)
Q Consensus 545 ~~~~~~~~-----~~~~~~~~~~l~~h~~~V--tsVafSPDG~~LaSgs~------------------------------ 587 (1784)
...+.... .++.......+.+..+.+ ..++++|...+++....
T Consensus 357 ~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ 436 (527)
T TIGR03075 357 TGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPP 436 (527)
T ss_pred CCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCC
Confidence 10000000 000000001111111111 23455555544443222
Q ss_pred ---CCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcceE--EEEEcC
Q 000251 588 ---DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLV--DGKFSP 662 (1784)
Q Consensus 588 ---DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~It--slafSP 662 (1784)
-|.|.-+|+.+|+.+................ .+.+++.++.||.++.+|..+|+.+..+..+. .+. -+.|.-
T Consensus 437 ~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~-~~~a~P~ty~~ 513 (527)
T TIGR03075 437 DDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS-GIVGPPVTYEQ 513 (527)
T ss_pred CCCceeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCCC-CceecCEEEEe
Confidence 2568888999998888765332212222111 33466668889999999999999999887543 222 234445
Q ss_pred CCCEEE
Q 000251 663 DGASII 668 (1784)
Q Consensus 663 DGk~LA 668 (1784)
+|+..+
T Consensus 514 ~G~qYv 519 (527)
T TIGR03075 514 DGKQYV 519 (527)
T ss_pred CCEEEE
Confidence 665433
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.5e-05 Score=90.64 Aligned_cols=127 Identities=16% Similarity=0.273 Sum_probs=102.0
Q ss_pred CCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCC-----eEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCEEEEEECC
Q 000251 269 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA-----YCLASCRGHEGDITDLAVSS-NNALVASASNDCIIRVWRLP 342 (1784)
Q Consensus 269 H~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tg-----k~l~tL~gH~~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~ 342 (1784)
-.+.|.++.|...+.+|+.|..+|.|.+.|+..+ .+.+.+ .|...|+++..-. ++++|.+.+.+|+|.+||++
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 3567999999999999999999999999999764 334444 4899999998776 78899999999999999997
Q ss_pred CCCe---eEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeec
Q 000251 343 DGLP---ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 397 (1784)
Q Consensus 343 tgk~---i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l 397 (1784)
--++ +..+.||...-.-+-++-+.... .+++++.|...+||.++.|.++.++..
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred hhhcccceeeeecccccccccccccccccc-eEEEccCeeEEEEEecccCceeeccCC
Confidence 6655 88888887655555554333222 788899999999999999998877744
|
|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=2e-05 Score=105.19 Aligned_cols=86 Identities=21% Similarity=0.432 Sum_probs=76.5
Q ss_pred ccccc-cccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHH
Q 000251 1690 QDQYG-VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVT 1768 (1784)
Q Consensus 1690 ~~~~~-~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s~i~~~a~~l~~~~~ 1768 (1784)
.|..+ |..++...++|+|+++|+.|||+.||+.+|++..|+++++|..|+.+|..||..||..+..+++.|..+++...
T Consensus 580 kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~dtv~~r~av~~~e~~~ 659 (1051)
T KOG0955|consen 580 KDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAAVRLRELIK 659 (1051)
T ss_pred ccccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccCeehHhhhHHHHhhhh
Confidence 34443 44556777899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhcCC
Q 000251 1769 RTLSSLK 1775 (1784)
Q Consensus 1769 ~~i~~~~ 1775 (1784)
+.+.+.+
T Consensus 660 ~~~~~ar 666 (1051)
T KOG0955|consen 660 KDFRNAR 666 (1051)
T ss_pred hHHHhcc
Confidence 7766544
|
|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.8e-05 Score=102.40 Aligned_cols=85 Identities=18% Similarity=0.312 Sum_probs=79.3
Q ss_pred cccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHH
Q 000251 1691 DQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRT 1770 (1784)
Q Consensus 1691 ~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s~i~~~a~~l~~~~~~~ 1770 (1784)
..-.|..++....+|+||.+|+.|+++..|++++++..|.++.++..|+.+++.||++||+.+|.++..|..|..+|...
T Consensus 1047 ~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~egs~~y~d~~~l~~~~~~~ 1126 (1157)
T KOG0386|consen 1047 LSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYNEEGSRVYEDAIVLQSVFKSA 1126 (1157)
T ss_pred cchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhccCCceechhHHHHHHHHhhh
Confidence 34577888888899999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhcCC
Q 000251 1771 LSSLK 1775 (1784)
Q Consensus 1771 i~~~~ 1775 (1784)
..++.
T Consensus 1127 ~~~~~ 1131 (1157)
T KOG0386|consen 1127 RQEIS 1131 (1157)
T ss_pred HHHHh
Confidence 77665
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0033 Score=79.66 Aligned_cols=117 Identities=23% Similarity=0.258 Sum_probs=93.0
Q ss_pred CCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCee
Q 000251 269 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS-CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 347 (1784)
Q Consensus 269 H~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~t-L~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i 347 (1784)
|...|.--+++..+++|+.|+.-|.|.+|+-.+|..... ..+..+.+..+.++++..++|.|+..|.|.|+-+..+.+-
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 445566667888899999999999999999887765433 2345566777888999999999999999999988764321
Q ss_pred -----EEe-cCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCC
Q 000251 348 -----SVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 388 (1784)
Q Consensus 348 -----~~L-~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~t 388 (1784)
..+ ..|...|++++|++++. .|++|...|.|.+-.+..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~---k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGM---KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEeccccc---EEeecCCCceEEEEEech
Confidence 111 34778999999999997 899999999999988876
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00076 Score=80.22 Aligned_cols=93 Identities=20% Similarity=0.287 Sum_probs=76.0
Q ss_pred EEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCC
Q 000251 336 IRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 415 (1784)
Q Consensus 336 IrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~ 415 (1784)
|++.+..+-+.+..+.+|...|..++|+|...+ ++..++.+..|.|.|+++...+.....
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~G--Ll~~asl~nkiki~dlet~~~vssy~a------------------ 234 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEG--LLGLASLGNKIKIMDLETSCVVSSYIA------------------ 234 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccc--eeeeeccCceEEEEecccceeeeheec------------------
Confidence 666766666667778889999999999998653 688899999999999998876665532
Q ss_pred CCCCCceEEEEECCCC-CEEEEeeCCceEEEEcCCCC
Q 000251 416 GPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKP 451 (1784)
Q Consensus 416 ~~h~~~V~sLafSpdG-~~LasGs~DG~IrVWDl~tg 451 (1784)
...+++++|.-|. .+|.+|...|.|.|||++..
T Consensus 235 ---~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 235 ---YNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred ---cCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 3569999998865 67888889999999999764
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00023 Score=91.16 Aligned_cols=170 Identities=15% Similarity=0.232 Sum_probs=127.9
Q ss_pred cccccceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC--
Q 000251 255 TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN-- 332 (1784)
Q Consensus 255 ~~~~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~-- 332 (1784)
.+..+.+..+...--.+.|+-+. .++++|.+|...|+|.+-|..+.+.++++..|++.|.++.. .|++|++++.
T Consensus 162 ~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~ 237 (1118)
T KOG1275|consen 162 IDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSM 237 (1118)
T ss_pred eecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeeccc
Confidence 44556666666655555555554 46889999999999999999999999999999999998776 5888888875
Q ss_pred -------CCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCccc-ceeecCCCCCcc
Q 000251 333 -------DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS-PRIYIPRPSDAV 404 (1784)
Q Consensus 333 -------DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l-~~i~l~~~~~~~ 404 (1784)
|..|+|||++..+.+.-+.-+.++ .-+.|+|.-. ..+++++..|.+.+-|..+-... ..+
T Consensus 238 R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~--t~~~V~S~sGq~q~vd~~~lsNP~~~~--------- 305 (1118)
T KOG1275|consen 238 RRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT--TRLAVTSQSGQFQFVDTATLSNPPAGV--------- 305 (1118)
T ss_pred ccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc--ceEEEEecccceeeccccccCCCccce---------
Confidence 556899999888777666655554 5578888654 37889999999999884322110 111
Q ss_pred cCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcC
Q 000251 405 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 448 (1784)
Q Consensus 405 ~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl 448 (1784)
....+.+..+..++++++|..+|.|..+|.|.+|.-
T Consensus 306 --------~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 306 --------KMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred --------eEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 111234455899999999999999999999999973
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.009 Score=71.81 Aligned_cols=282 Identities=13% Similarity=0.118 Sum_probs=158.9
Q ss_pred cEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe----------CCCEEEEEECCCCCeeEEecCC---CC---
Q 000251 292 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS----------NDCIIRVWRLPDGLPISVLRGH---TA--- 355 (1784)
Q Consensus 292 GtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS----------~DGtIrVWDl~tgk~i~~L~gH---~~--- 355 (1784)
+.|.|+|..+++.+..+.. +-.-.+.++|+++.+++++ ..-.|.+||..+-.+...+.-. ..
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 5899999999999888763 3344577899999888753 2346999999998777644211 11
Q ss_pred -ceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCC-CCE
Q 000251 356 -AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-GTV 433 (1784)
Q Consensus 356 -~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpd-G~~ 433 (1784)
....++++.+++.. ++.-.+---.|.|.|+..++.+..+.++. |.-.-|. ..-
T Consensus 95 ~~~~~~~ls~dgk~~-~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------------------------C~~iyP~~~~~ 149 (342)
T PF06433_consen 95 PYKNMFALSADGKFL-YVQNFTPATSVTVVDLAAKKVVGEIDTPG------------------------CWLIYPSGNRG 149 (342)
T ss_dssp --GGGEEE-TTSSEE-EEEEESSSEEEEEEETTTTEEEEEEEGTS------------------------EEEEEEEETTE
T ss_pred ccccceEEccCCcEE-EEEccCCCCeEEEEECCCCceeeeecCCC------------------------EEEEEecCCCc
Confidence 22346778887621 22233445678889999888877775421 2222232 245
Q ss_pred EEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCcccccc--ccCCeE
Q 000251 434 FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW--FCHDNI 511 (1784)
Q Consensus 434 LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~--~~~~~L 511 (1784)
|.+-|.||.+....+... ++.... ++ -.|.++. .+.+.... .....+
T Consensus 150 F~~lC~DGsl~~v~Ld~~--------Gk~~~~---~t-----~~F~~~~---------------dp~f~~~~~~~~~~~~ 198 (342)
T PF06433_consen 150 FSMLCGDGSLLTVTLDAD--------GKEAQK---ST-----KVFDPDD---------------DPLFEHPAYSRDGGRL 198 (342)
T ss_dssp EEEEETTSCEEEEEETST--------SSEEEE---EE-----EESSTTT---------------S-B-S--EEETTTTEE
T ss_pred eEEEecCCceEEEEECCC--------CCEeEe---ec-----cccCCCC---------------cccccccceECCCCeE
Confidence 777888998888877531 222111 10 1222211 01111110 112456
Q ss_pred EEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEec---C
Q 000251 512 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM---D 588 (1784)
Q Consensus 512 VSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~---D 588 (1784)
+-.+..|.|+--|+..... .+...+.+... . ...-.--.++-.-+++++....|++.-. +
T Consensus 199 ~F~Sy~G~v~~~dlsg~~~-----~~~~~~~~~t~-----------~-e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~ 261 (342)
T PF06433_consen 199 YFVSYEGNVYSADLSGDSA-----KFGKPWSLLTD-----------A-EKADGWRPGGWQLIAYHAASGRLYVLMHQGGE 261 (342)
T ss_dssp EEEBTTSEEEEEEETTSSE-----EEEEEEESS-H-----------H-HHHTTEEE-SSS-EEEETTTTEEEEEEEE--T
T ss_pred EEEecCCEEEEEeccCCcc-----cccCcccccCc-----------c-ccccCcCCcceeeeeeccccCeEEEEecCCCC
Confidence 6677888888877764331 11111111000 0 0000001133445677765555544211 2
Q ss_pred C-------eEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEE-EeCCCcEEEEeCCCCceEEEEe
Q 000251 589 C-------RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS-AGYDGKTIVWDIWEGIPIRIYE 649 (1784)
Q Consensus 589 G-------sI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaS-gs~DG~IrIWDl~tG~~l~tl~ 649 (1784)
+ .|.++|+.+++.+..+.. ...+.+|+++.++.-+|++ ...++.|.|||..+|+.++.+.
T Consensus 262 gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 262 GSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp T-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 2 388999999999998874 2347789999866655554 4568999999999999999887
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0032 Score=80.73 Aligned_cols=105 Identities=10% Similarity=0.018 Sum_probs=78.3
Q ss_pred EcCCCCEEEEEecCCeEEEEECCC-----CceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc------
Q 000251 575 WSLDNRFVLAAIMDCRICVWNAAD-----GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI------ 643 (1784)
Q Consensus 575 fSPDG~~LaSgs~DGsI~VWDl~t-----gklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~------ 643 (1784)
+.++|++...+ ++.|.+.|..+ .+.+..+.- ......+.++|++..+++++..+.+|.|.|+.+.+
T Consensus 284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 34578877763 67899999988 345555543 34457899999777777777889999999998755
Q ss_pred ------eEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000251 644 ------PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 683 (1784)
Q Consensus 644 ------~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~s 683 (1784)
.+.....+.++ ...+|.++|....+-.-|.+|..|++..
T Consensus 361 ~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 24444444433 4579999998777888999999999875
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0013 Score=84.16 Aligned_cols=160 Identities=19% Similarity=0.198 Sum_probs=111.1
Q ss_pred EccCCCCEEEEEECC-------------CCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCC-----CCEE
Q 000251 266 VRGHRNAVYCAIFDR-------------SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN-----NALV 327 (1784)
Q Consensus 266 L~GH~~~Vt~VaFSP-------------DG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpD-----g~lL 327 (1784)
|..|.+.|+-..+.- +|.++||||.||+|.|-.+-+.+...++. ...++.+|+++|+ .+.+
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~f 132 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQF 132 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhhe
Confidence 455666665555544 49999999999999999999988877765 4578999999998 5688
Q ss_pred EEEeCCCEEEEEECC--CCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCccc
Q 000251 328 ASASNDCIIRVWRLP--DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 405 (1784)
Q Consensus 328 ASGS~DGtIrVWDl~--tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~ 405 (1784)
++|+.-| +.++.-. ..+.-..+....|+|.++.|..+ ++|-++.+| |+|||+.+++.+..+..+...
T Consensus 133 v~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~-----lIAWand~G-v~vyd~~~~~~l~~i~~p~~~---- 201 (846)
T KOG2066|consen 133 VSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN-----LIAWANDDG-VKVYDTPTRQRLTNIPPPSQS---- 201 (846)
T ss_pred eecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc-----EEEEecCCC-cEEEeccccceeeccCCCCCC----
Confidence 9999888 7776521 11111246667899999999874 677777666 999999988766555322210
Q ss_pred CCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCC
Q 000251 406 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNAC 449 (1784)
Q Consensus 406 g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~ 449 (1784)
.........+.|.++.+ |+.|= ..+|+|..++
T Consensus 202 ----------~R~e~fpphl~W~~~~~-LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 202 ----------VRPELFPPHLHWQDEDR-LVIGW-GDSVKICSIK 233 (846)
T ss_pred ----------CCcccCCCceEecCCCe-EEEec-CCeEEEEEEe
Confidence 01122234577886654 55554 3468888886
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.013 Score=75.55 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=69.9
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEE-----------------EeCCCcEEEEeCCCCc
Q 000251 581 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS-----------------AGYDGKTIVWDIWEGI 643 (1784)
Q Consensus 581 ~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaS-----------------gs~DG~IrIWDl~tG~ 643 (1784)
.+++++.+|.+...|..+|+.+....... ..++.+| +.+++. ...+|.|.-.|+.+|+
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 67788899999999999999988764211 1233333 222221 1246788899999999
Q ss_pred eEEEEeccC--------cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccc
Q 000251 644 PIRIYEISR--------FRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKD 689 (1784)
Q Consensus 644 ~l~tl~~~~--------~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~~~~ 689 (1784)
.+....... .+.......-.+.+|++++.+|.|+.+|..+|+.+-.
T Consensus 378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWK 431 (488)
T ss_pred EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeE
Confidence 888876441 1111111123567888889999999999999987643
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00081 Score=86.40 Aligned_cols=185 Identities=12% Similarity=0.151 Sum_probs=137.1
Q ss_pred CCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEE
Q 000251 281 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAI 360 (1784)
Q Consensus 281 DG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsL 360 (1784)
++..++.|+-...+..+|+.+++..+...-..+.|+-|.. ++++|.+|...|+|.+-|..+.+.+.++..|++.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4456788888888999999999888777655556766665 68899999999999999999999999999999999877
Q ss_pred EecCCCCccEEEEEEeC---------CCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCC-
Q 000251 361 AFSPRPGSVYQLLSSSD---------DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN- 430 (1784)
Q Consensus 361 afSPdg~~~~~LaSgs~---------DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpd- 430 (1784)
.... + +|+++|. |..|+|||++..+.+..+.++.. ..-+.|.|.
T Consensus 224 Dv~G--N---lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~---------------------P~flrf~Psl 277 (1118)
T KOG1275|consen 224 DVQG--N---LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG---------------------PQFLRFHPSL 277 (1118)
T ss_pred eccC--C---eEEEeecccccccccccchhhhhhhhhhhccCCcccccC---------------------chhhhhcccc
Confidence 6654 3 7888775 45689999998776555433211 234556664
Q ss_pred CCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCe
Q 000251 431 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 510 (1784)
Q Consensus 431 G~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~ 510 (1784)
...+++.+..|...+-|..+. ..+...+..+......+..+.+++++ +.
T Consensus 278 ~t~~~V~S~sGq~q~vd~~~l-----sNP~~~~~~v~p~~s~i~~fDiSsn~--------------------------~a 326 (1118)
T KOG1275|consen 278 TTRLAVTSQSGQFQFVDTATL-----SNPPAGVKMVNPNGSGISAFDISSNG--------------------------DA 326 (1118)
T ss_pred cceEEEEecccceeecccccc-----CCCccceeEEccCCCcceeEEecCCC--------------------------ce
Confidence 246778888898888885321 12222233333444558888888876 78
Q ss_pred EEEEeCCCcEEEEe
Q 000251 511 IVTCSRDGSAIIWI 524 (1784)
Q Consensus 511 LVSgS~DGtIrIWD 524 (1784)
++.|..+|.|.+|-
T Consensus 327 lafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 327 LAFGDHEGHVNLWA 340 (1118)
T ss_pred EEEecccCcEeeec
Confidence 99999999999996
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.07 Score=65.47 Aligned_cols=92 Identities=14% Similarity=0.077 Sum_probs=45.7
Q ss_pred ECCCCeEEEEEecCCCCeE-----EEEEcCCCCEEEEEeC-C--CEEEEEECCCCCeeEEecCCCCceEEEEecCCCCcc
Q 000251 298 SMETAYCLASCRGHEGDIT-----DLAVSSNNALVASASN-D--CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV 369 (1784)
Q Consensus 298 Dl~Tgk~l~tL~gH~~~Vt-----sLafSpDg~lLASGS~-D--GtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~ 369 (1784)
|..||..+..|..+...-. .=+|.+||+.|+.++. | ..+.+.|+.+++..+...+-........++|+++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~-- 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDR-- 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSS--
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCC--
Confidence 6778888887764333222 2357788976655544 4 4677779988876655443323233566778776
Q ss_pred EEEEEEeCCCcEEEEecCCCccc
Q 000251 370 YQLLSSSDDGTCRIWDARYSQFS 392 (1784)
Q Consensus 370 ~~LaSgs~DGtIrIWDl~tg~~l 392 (1784)
.|+-......|...|+.+.+..
T Consensus 94 -~~~Yv~~~~~l~~vdL~T~e~~ 115 (386)
T PF14583_consen 94 -ALYYVKNGRSLRRVDLDTLEER 115 (386)
T ss_dssp -EEEEEETTTEEEEEETTT--EE
T ss_pred -eEEEEECCCeEEEEECCcCcEE
Confidence 5555555678888899887644
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0022 Score=81.40 Aligned_cols=107 Identities=15% Similarity=0.182 Sum_probs=85.8
Q ss_pred EEECCCCCEEEEEc----CCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEec
Q 000251 276 AIFDRSGRYVITGS----DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR 351 (1784)
Q Consensus 276 VaFSPDG~~LATGS----~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~ 351 (1784)
..|+|...++|+++ ..|.|.||- ++|.+..... ..-.+++++|+|..-.||.|-.-|.+.+|...+.+.-....
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~ 98 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE 98 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence 45788887877765 358888885 5666443322 12336779999999999999999999999987777666677
Q ss_pred CCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecC
Q 000251 352 GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387 (1784)
Q Consensus 352 gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~ 387 (1784)
.|..+|..+.||++|+ .|+++..-|.|.+|...
T Consensus 99 th~a~i~~l~wS~~G~---~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 99 THPAPIQGLDWSHDGT---VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCCCCceeEEecCCCC---eEEEcCCCceeEEEEee
Confidence 8999999999999998 89999999999999876
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0077 Score=77.75 Aligned_cols=224 Identities=10% Similarity=0.081 Sum_probs=135.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCc-eEEEEecCCCCccEEEEEEeCCCc-----EEEEecC
Q 000251 314 DITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAA-VTAIAFSPRPGSVYQLLSSSDDGT-----CRIWDAR 387 (1784)
Q Consensus 314 ~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~-VtsLafSPdg~~~~~LaSgs~DGt-----IrIWDl~ 387 (1784)
.|+| |++.+..+|.|+.+|.|.+.+ ..-+.+..++.+... |..+-...+.. +|++.+.|+. |+||+++
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~---~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQN---FLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCce---EEEEEeecCCCCceEEEEeccc
Confidence 4443 678888999999999888877 334455777777776 44443333322 7777776654 8999987
Q ss_pred CCcccc--eeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceee
Q 000251 388 YSQFSP--RIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 465 (1784)
Q Consensus 388 tg~~l~--~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~ 465 (1784)
...... ... +..............++.+++.+.+-+.+|+|-.+|.|..+.-.-.. ..+.....
T Consensus 101 k~~~n~sP~c~---------~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R-----Drgsr~~~ 166 (933)
T KOG2114|consen 101 KVDKNNSPQCL---------YEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR-----DRGSRQDY 166 (933)
T ss_pred ccCCCCCccee---------eeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh-----ccccceee
Confidence 542111 000 00000000111245668899999999999999999999988542110 11122222
Q ss_pred ecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccC
Q 000251 466 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKV 545 (1784)
Q Consensus 466 l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~ 545 (1784)
...-..+|+.+.+..++ ..++-...-..|.+|.+.. +
T Consensus 167 ~~~~~~pITgL~~~~d~--------------------------~s~lFv~Tt~~V~~y~l~g-r---------------- 203 (933)
T KOG2114|consen 167 SHRGKEPITGLALRSDG--------------------------KSVLFVATTEQVMLYSLSG-R---------------- 203 (933)
T ss_pred eccCCCCceeeEEecCC--------------------------ceeEEEEecceeEEEEecC-C----------------
Confidence 33345689999998765 2212233344677777662 1
Q ss_pred CCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEe-cCCCCe
Q 000251 546 PPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT-GHTEST 612 (1784)
Q Consensus 546 ~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~-gH~~~V 612 (1784)
+.....+..+...++|..|++....+++++. ..|.+|+....++-..+. ||....
T Consensus 204 -----------~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 204 -----------TPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred -----------CcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEE
Confidence 1112224556677888888876654555544 469999988766666776 665543
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.046 Score=69.02 Aligned_cols=116 Identities=16% Similarity=0.244 Sum_probs=80.5
Q ss_pred CCCCeeEEEEcCC-CCEEEE----EecCCe----EEEEECCCCceEE--EE-ecCCCCeEEEEEecCCCcEEEEEeCCCc
Q 000251 566 TPRGVNMIVWSLD-NRFVLA----AIMDCR----ICVWNAADGSLVH--SL-TGHTESTYVLDVHPFNPRIAMSAGYDGK 633 (1784)
Q Consensus 566 h~~~VtsVafSPD-G~~LaS----gs~DGs----I~VWDl~tgklv~--~L-~gH~~~VtsLafSPdd~~lLaSgs~DG~ 633 (1784)
......++.||.. ...+.+ .+.+|. ..+|+...++... .. -.....|.+++++| +...|+.|+.||.
T Consensus 204 TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgS 282 (545)
T PF11768_consen 204 TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGS 282 (545)
T ss_pred ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCe
Confidence 3444566777753 333433 223333 4567766554322 11 14567799999999 6667778999999
Q ss_pred EEEEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000251 634 TIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 684 (1784)
Q Consensus 634 IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sG 684 (1784)
|.+||...+... +......++.++|+|+|..+++|+..|.|.+||+.-+
T Consensus 283 iiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 283 IILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 999999776433 3334556788999999999999999999999998643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.015 Score=74.33 Aligned_cols=224 Identities=8% Similarity=0.088 Sum_probs=116.0
Q ss_pred ccccccccccceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEe--cC--CCCeEEEE------
Q 000251 250 IAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR--GH--EGDITDLA------ 319 (1784)
Q Consensus 250 ~~~~~~~~~~~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~--gH--~~~VtsLa------ 319 (1784)
.....+...+-+.......|..+|.-+.||++|..|+|+..-|.|.+|...--..+.... .| ...++-++
T Consensus 81 g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~ 160 (1416)
T KOG3617|consen 81 GVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYD 160 (1416)
T ss_pred ceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCC
Confidence 344455556666666778899999999999999999999999999999865211111100 00 00111111
Q ss_pred ------------------------E-------------cCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEe
Q 000251 320 ------------------------V-------------SSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAF 362 (1784)
Q Consensus 320 ------------------------f-------------SpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLaf 362 (1784)
| .|+|..++.++.+|+|.--| +.|++....+.... ..+-|
T Consensus 161 ~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvd-q~g~~~~V~k~dS~--vQmLf 237 (1416)
T KOG3617|consen 161 REEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVD-QNGRQRTVHKLDSE--VQMLF 237 (1416)
T ss_pred hHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEc-CCCcEEEEEEccch--HHHHH
Confidence 1 24566666677777777666 45555444332111 12333
Q ss_pred cCCCCccEEEEEEeCCCcEEEEec-CCCcccc--eeecCCCCC-----cccCCCCC---CC-CCCCCCCCceEEEEECCC
Q 000251 363 SPRPGSVYQLLSSSDDGTCRIWDA-RYSQFSP--RIYIPRPSD-----AVAGRNMA---PS-SSAGPQSHQIFCCAFNAN 430 (1784)
Q Consensus 363 SPdg~~~~~LaSgs~DGtIrIWDl-~tg~~l~--~i~l~~~~~-----~~~g~~~~---~~-~s~~~h~~~V~sLafSpd 430 (1784)
.+... .++..-.+-+++++-+ .+|.... ...+..... ...+.... +. ......+..++|+|++..
T Consensus 238 ~~~~e---ai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~ 314 (1416)
T KOG3617|consen 238 MGYCE---AISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEK 314 (1416)
T ss_pred hcccc---eEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEecc
Confidence 33222 2333333333333222 1111100 000000000 00000000 00 011224567999999999
Q ss_pred CCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeec---CCCCCceEEEEccC
Q 000251 431 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS---GHENDVNYVQFSGC 481 (1784)
Q Consensus 431 G~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~---gH~~~V~sLafSpd 481 (1784)
+..|+.|...|.+.+|--..... .+.+......+. .-.+.|..+.|.|.
T Consensus 315 ~~~l~agt~~gnv~~w~~v~~~f--~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~ 366 (1416)
T KOG3617|consen 315 EIRLWAGTKEGNVTIWLDVNKGF--QGDPTIDVWTLNGKRESLGKISLIRWGPI 366 (1416)
T ss_pred ceEEEecccCCcEEEeeecCccc--cCCCCcceEEecCchhhccceEEEEeccc
Confidence 99999999999999996432111 112222233333 34567888888873
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.04 Score=66.43 Aligned_cols=276 Identities=13% Similarity=0.128 Sum_probs=156.3
Q ss_pred CEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEE----------eCCCcEEEEecCCCcccceeecCCCCCc
Q 000251 334 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS----------SDDGTCRIWDARYSQFSPRIYIPRPSDA 403 (1784)
Q Consensus 334 GtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSg----------s~DGtIrIWDl~tg~~l~~i~l~~~~~~ 403 (1784)
+.|.|+|..+++.+..+.. +..-.+..+|+++ .++++ -..-.|.+||..+......+.++.....
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk---~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGK---TIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSS---EEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCC---EEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 4799999999988877753 3344577899987 44432 2344699999999988887776542111
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeC--CceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccC
Q 000251 404 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS--DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 481 (1784)
Q Consensus 404 ~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~--DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpd 481 (1784)
. .......++++.||+++++... ...|.|.|+... +.+..+.- . -|...-|.
T Consensus 92 ~-------------~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~---------kvv~ei~~-P---GC~~iyP~ 145 (342)
T PF06433_consen 92 Q-------------VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK---------KVVGEIDT-P---GCWLIYPS 145 (342)
T ss_dssp --------------BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT---------EEEEEEEG-T---SEEEEEEE
T ss_pred e-------------ecccccceEEccCCcEEEEEccCCCCeEEEEECCCC---------ceeeeecC-C---CEEEEEec
Confidence 1 0112334678888888776532 456777777542 12221111 1 12222232
Q ss_pred cccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCce
Q 000251 482 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 561 (1784)
Q Consensus 482 glas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~ 561 (1784)
+ +..|.+-+.||++....+....... ..-...+
T Consensus 146 ~-------------------------~~~F~~lC~DGsl~~v~Ld~~Gk~~--~~~t~~F-------------------- 178 (342)
T PF06433_consen 146 G-------------------------NRGFSMLCGDGSLLTVTLDADGKEA--QKSTKVF-------------------- 178 (342)
T ss_dssp E-------------------------TTEEEEEETTSCEEEEEETSTSSEE--EEEEEES--------------------
T ss_pred C-------------------------CCceEEEecCCceEEEEECCCCCEe--Eeecccc--------------------
Confidence 2 3578888999999888887422111 0000000
Q ss_pred eccCCCC-CeeEEEEcCCCCEEEEEecCCeEEEEECCCCceE--EEEecC----------CCCeEEEEEecCCCcEEEEE
Q 000251 562 RILPTPR-GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV--HSLTGH----------TESTYVLDVHPFNPRIAMSA 628 (1784)
Q Consensus 562 ~l~~h~~-~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv--~~L~gH----------~~~VtsLafSPdd~~lLaSg 628 (1784)
..... -+..-+++..+..++.-+.+|.|+-.|+...... ..+.-- .+.-.-+++++..+++++..
T Consensus 179 --~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 179 --DPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp --STTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred --CCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 01111 1223345555555555677888888777654322 122110 11233477777555544432
Q ss_pred --eCCC-------cEEEEeCCCCceEEEEeccCcceEEEEEcCCCC-EEEEE-eCCCeEEEEECCCCcccccc
Q 000251 629 --GYDG-------KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGA-SIILS-DDVGQLYILNTGQGESQKDA 690 (1784)
Q Consensus 629 --s~DG-------~IrIWDl~tG~~l~tl~~~~~~ItslafSPDGk-~LAsg-s~DG~I~IWdl~sGe~~~~~ 690 (1784)
+.+| .|-++|+.+++.+..+.. ..++.+|.++.|.+ +|.+. ..++.|.|||..+|+.+...
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 1222 377889999999999984 34688999999887 55444 45799999999999887644
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.47 E-value=9e-05 Score=95.32 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=69.6
Q ss_pred ccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHH
Q 000251 1688 RVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLS 1764 (1784)
Q Consensus 1688 ~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s~i~~~a~~l~ 1764 (1784)
++.+.++|...+.....|+||.+|+.||||+|+.++|.+.-|-+.+.|+.|+.+||.||++||...+..++.=..+.
T Consensus 300 ~~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~~~vv~ 376 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHGLIEFAVIM 376 (720)
T ss_pred ccccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchhhhhhhhhh
Confidence 47888999999999999999999999999999999999999999999999999999999999998886665544433
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.042 Score=68.71 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=64.4
Q ss_pred eeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEE-EEEecCC----------------C-
Q 000251 561 QRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYV-LDVHPFN----------------P- 622 (1784)
Q Consensus 561 ~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~Vts-LafSPdd----------------~- 622 (1784)
..+......+.+++.+|++++.|+...=|+|.++|+.++..++.++|-.+.-.. +...... .
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence 344455567899999999999999888899999999999998888876543111 1111101 1
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEec
Q 000251 623 RIAMSAGYDGKTIVWDIWEGIPIRIYEI 650 (1784)
Q Consensus 623 ~lLaSgs~DG~IrIWDl~tG~~l~tl~~ 650 (1784)
.+++-+-.-|.|.||.+.+|..+..+..
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 2334456788999999999988877763
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.098 Score=66.10 Aligned_cols=106 Identities=13% Similarity=0.113 Sum_probs=63.1
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecC-CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000251 567 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH-TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 645 (1784)
Q Consensus 567 ~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH-~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l 645 (1784)
.+++..+++||+|++||.-..+|.+.|....-.+.+..+... ......|.|+- .|..+..|. ..+
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG----------~dav~l~~~----~~l 281 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG----------NDAVVLSWE----DEL 281 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC----------CCcEEEEeC----CEE
Confidence 457999999999999999999999999987666666655543 23445566643 333344441 112
Q ss_pred EEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccccc
Q 000251 646 RIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDA 690 (1784)
Q Consensus 646 ~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~~~~~ 690 (1784)
..+. ..+ ..+.|.-++..++..-.|| |+|+.-.+-+.+..+
T Consensus 282 ~lvg-~~~--~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~V 322 (410)
T PF04841_consen 282 LLVG-PDG--DSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRV 322 (410)
T ss_pred EEEC-CCC--CceEEeccCceEEeccCCc-eEEEeCCceEEEEEC
Confidence 2221 111 1234555555555555555 777776655554443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.027 Score=69.66 Aligned_cols=307 Identities=13% Similarity=0.114 Sum_probs=160.3
Q ss_pred cCCCCEEEEE---------eCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcc
Q 000251 321 SSNNALVASA---------SNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 391 (1784)
Q Consensus 321 SpDg~lLASG---------S~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~ 391 (1784)
|||+++++.. +..+.+.|||+.+++....... ...+....|+|+++ .|+... ++.|.++++.++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~---~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGK---YIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSST---EEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCC---eeEEEe-cCceEEEECCCCCe
Confidence 5788877764 2346799999998765444333 67788999999987 555544 57899999887743
Q ss_pred cceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCC-ceEEEEcCCCCCCCCCCCCCcceeeecCCC
Q 000251 392 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD-TLARVWNACKPNTDDSDQPNHEIDVLSGHE 470 (1784)
Q Consensus 392 l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~D-G~IrVWDl~tg~~~~s~~~~~~i~~l~gH~ 470 (1784)
. ++..........|........ .--..-..+.|||||++||....| ..|..+.+-. .....
T Consensus 76 ~-~lT~dg~~~i~nG~~dwvyeE--Ev~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~---------------~~~~~ 137 (353)
T PF00930_consen 76 T-QLTTDGEPGIYNGVPDWVYEE--EVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD---------------YSPPD 137 (353)
T ss_dssp E-ESES--TTTEEESB--HHHHH--HTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE---------------ESSST
T ss_pred E-EeccccceeEEcCccceeccc--cccccccceEECCCCCEEEEEEECCcCCceEEeec---------------cCCcc
Confidence 2 222211111111110000000 001113468899999998876543 3343333310 00110
Q ss_pred ---CCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCC--cEEEEeCCCCCCCcccccccccccccC
Q 000251 471 ---NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG--SAIIWIPRSRRSHPKAARWTQAYHLKV 545 (1784)
Q Consensus 471 ---~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DG--tIrIWDl~t~~~~~~~~~w~~~~~l~~ 545 (1784)
..+..+.+--- |...- .+.|+|+.+++....
T Consensus 138 ~~yp~~~~~~YPk~--------------------------------G~~np~v~l~v~~~~~~~~~~~------------ 173 (353)
T PF00930_consen 138 SQYPEVESIRYPKA--------------------------------GDPNPRVSLFVVDLASGKTTEL------------ 173 (353)
T ss_dssp ESS-EEEEEE--BT--------------------------------TS---EEEEEEEESSSTCCCEE------------
T ss_pred ccCCcccccccCCC--------------------------------CCcCCceEEEEEECCCCcEEEe------------
Confidence 12223332111 11112 355677765432100
Q ss_pred CCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecC-----CeEEEEECCCCceEEEEec-CCCC---eEEEE
Q 000251 546 PPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD-----CRICVWNAADGSLVHSLTG-HTES---TYVLD 616 (1784)
Q Consensus 546 ~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~D-----GsI~VWDl~tgklv~~L~g-H~~~---VtsLa 616 (1784)
...........-+..+.|++++..|+..-.+ ..+.++|..++.....+.. ..+. -..+.
T Consensus 174 ------------~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~ 241 (353)
T PF00930_consen 174 ------------DPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPH 241 (353)
T ss_dssp ---------------HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEE
T ss_pred ------------eeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccc
Confidence 0000112234458899999999955443322 2477889888766544332 2222 23455
Q ss_pred Ee-cCCCcEEEEEeCCCcEEE--EeCCCCceEEEEeccCcceEE-EEEcCCCCEEE-EEeC----CCeEEEEECC-CCcc
Q 000251 617 VH-PFNPRIAMSAGYDGKTIV--WDIWEGIPIRIYEISRFRLVD-GKFSPDGASII-LSDD----VGQLYILNTG-QGES 686 (1784)
Q Consensus 617 fS-Pdd~~lLaSgs~DG~IrI--WDl~tG~~l~tl~~~~~~Its-lafSPDGk~LA-sgs~----DG~I~IWdl~-sGe~ 686 (1784)
|. +++..+|.....||.-+| .+...+. .+.+..+...|.. +.|+++++.|. ++.. ...|+..++. .|+.
T Consensus 242 ~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~ 320 (353)
T PF00930_consen 242 FLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP 320 (353)
T ss_dssp E-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE
T ss_pred cccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe
Confidence 54 667777777778885544 5554444 4456656677865 68999988776 4443 2377777887 5544
Q ss_pred cc----ccc-cceeecCCCcceEEcc
Q 000251 687 QK----DAK-YDQFFLGDYRPLVQDT 707 (1784)
Q Consensus 687 ~~----~~~-~~~~fs~D~r~Lv~d~ 707 (1784)
.. ... +...|+++++.++...
T Consensus 321 ~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 321 KCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred EeccCCCCCceEEEECCCCCEEEEEE
Confidence 22 111 3678899988876443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0063 Score=76.48 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=84.2
Q ss_pred EEEEECC-CCCEEEEE----cCCc----EEEEEECCCCeEEE--EE-ecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEC
Q 000251 274 YCAIFDR-SGRYVITG----SDDR----LVKIWSMETAYCLA--SC-RGHEGDITDLAVSSNNALVASASNDCIIRVWRL 341 (1784)
Q Consensus 274 t~VaFSP-DG~~LATG----S~DG----tIkIWDl~Tgk~l~--tL-~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl 341 (1784)
.++.||- +...+.|. +.+| .-++|++..++... .. -.....|.|++++|+...|+.|+.||.|.+||.
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 5677776 33444443 3344 23566765544321 11 147789999999999999999999999999998
Q ss_pred CCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCccccee
Q 000251 342 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 395 (1784)
Q Consensus 342 ~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i 395 (1784)
..+. ..+....-..+.++|+|+|. .|++|+..|.|.+||+.-......+
T Consensus 289 ~~~~--t~~~ka~~~P~~iaWHp~ga---i~~V~s~qGelQ~FD~ALspi~~qL 337 (545)
T PF11768_consen 289 TRGV--TLLAKAEFIPTLIAWHPDGA---IFVVGSEQGELQCFDMALSPIKMQL 337 (545)
T ss_pred CCCe--eeeeeecccceEEEEcCCCc---EEEEEcCCceEEEEEeecCccceee
Confidence 7663 33334556788999999997 8999999999999999866544443
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.2 Score=57.45 Aligned_cols=106 Identities=11% Similarity=0.025 Sum_probs=74.7
Q ss_pred CCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEE
Q 000251 281 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAI 360 (1784)
Q Consensus 281 DG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsL 360 (1784)
-|++++.|...|.+.+.++.||.....+..-..--......+++.+|..|+.|++....|..+..++...+...+...+-
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 46789999999999999999998777665322211223356789999999999999999999988888776554444455
Q ss_pred EecCCCCccEEEEEEeCCCcEEEEecCCC
Q 000251 361 AFSPRPGSVYQLLSSSDDGTCRIWDARYS 389 (1784)
Q Consensus 361 afSPdg~~~~~LaSgs~DGtIrIWDl~tg 389 (1784)
+..|-.. .|..+...|.|.--...++
T Consensus 142 ~i~~g~~---sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 142 VIAPGDG---SLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred eecCCCc---eEEEEeccceEEEEccCCC
Confidence 5555222 4555666666655554443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.017 Score=74.73 Aligned_cols=181 Identities=14% Similarity=0.217 Sum_probs=118.8
Q ss_pred CEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCC-eEEEEEcCCCCEEEEEeCCC-----EEEEEECCCC-
Q 000251 272 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD-ITDLAVSSNNALVASASNDC-----IIRVWRLPDG- 344 (1784)
Q Consensus 272 ~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~-VtsLafSpDg~lLASGS~DG-----tIrVWDl~tg- 344 (1784)
.|.| |++.+..+|.|+.+|.|.+.+- .-+.++.+..+... |..+-...+..+|++.+.|+ .|+||+++.-
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 5555 7788999999999998888873 24455777777776 55554444446888877664 5999998532
Q ss_pred -----CeeE--EecC-----CCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCC
Q 000251 345 -----LPIS--VLRG-----HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 412 (1784)
Q Consensus 345 -----k~i~--~L~g-----H~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~ 412 (1784)
.++. .+.. ...++.+++.+.+-+ .+|+|-.+|.|.++.-+-.+ .. + ...
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~---~Iv~Gf~nG~V~~~~GDi~R---Dr----------g---sr~ 164 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK---TIVCGFTNGLVICYKGDILR---DR----------G---SRQ 164 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc---EEEEEecCcEEEEEcCcchh---cc----------c---cce
Confidence 2331 1112 356789999999865 89999999999998533111 00 0 001
Q ss_pred CCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCc
Q 000251 413 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 482 (1784)
Q Consensus 413 ~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg 482 (1784)
........+|+.+++..++..++....-..|.+|.+.. ++ .....+..|...+.|..+++..
T Consensus 165 ~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-------r~-p~~~~ld~~G~~lnCss~~~~t 226 (933)
T KOG2114|consen 165 DYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-------RT-PSLKVLDNNGISLNCSSFSDGT 226 (933)
T ss_pred eeeccCCCCceeeEEecCCceeEEEEecceeEEEEecC-------CC-cceeeeccCCccceeeecCCCC
Confidence 11223567899999999987633333345689998852 11 2344567788888888888653
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.032 Score=69.78 Aligned_cols=304 Identities=13% Similarity=0.115 Sum_probs=144.6
Q ss_pred CEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCC--------
Q 000251 272 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD-------- 343 (1784)
Q Consensus 272 ~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~t-------- 343 (1784)
.|+++.|.++..-||.|...|.|.||.+...+... ......-..+.|.+- ...++.-.|-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999999999999999999999886543322 000011111111110 00111112223221
Q ss_pred C-CeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCce
Q 000251 344 G-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 422 (1784)
Q Consensus 344 g-k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V 422 (1784)
| .+...+....++|++++.|.-| +++.|..+|.+.|.|++....+....+.. ..........|
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG----Fvaigy~~G~l~viD~RGPavI~~~~i~~------------~~~~~~~~~~v 138 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG----FVAIGYESGSLVVIDLRGPAVIYNENIRE------------SFLSKSSSSYV 138 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS----EEEEEETTSEEEEEETTTTEEEEEEEGGG--------------T-SS----E
T ss_pred ccCchhheeccCCcEeEEecCCCc----EEEEEecCCcEEEEECCCCeEEeeccccc------------cccccccccCe
Confidence 1 3445556668999999998766 89999999999999999887666543321 01122345567
Q ss_pred EEEEECC-----CC---CEEEEeeCCceEEEEcCCCCCCCCCCCCCcc---eeeecCCCCCceEEEEccCcccccccccC
Q 000251 423 FCCAFNA-----NG---TVFVTGSSDTLARVWNACKPNTDDSDQPNHE---IDVLSGHENDVNYVQFSGCAVASRFSLAD 491 (1784)
Q Consensus 423 ~sLafSp-----dG---~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~---i~~l~gH~~~V~sLafSpdglas~~~~~~ 491 (1784)
+++.|+- |+ -.+++|+..|.+.+|.+.-.. ..... ......+.+.|..
T Consensus 139 t~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~-----~g~f~v~~~~~~~~~~~~i~~---------------- 197 (395)
T PF08596_consen 139 TSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSS-----NGRFSVQFAGATTNHDSPILS---------------- 197 (395)
T ss_dssp EEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-G-----GG-EEEEEEEEE--SS----E----------------
T ss_pred eEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCC-----CCceEEEEeeccccCCCceEE----------------
Confidence 8888863 33 478899999999999872100 00000 0000011111111
Q ss_pred CCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCee
Q 000251 492 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVN 571 (1784)
Q Consensus 492 s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vt 571 (1784)
|...+..++........- .. -......+
T Consensus 198 ----------------------------I~~i~~~~G~~a~At~~~----------------------~~-~l~~g~~i- 225 (395)
T PF08596_consen 198 ----------------------------IIPINADTGESALATISA----------------------MQ-GLSKGISI- 225 (395)
T ss_dssp ----------------------------EEEEETTT--B-B-BHHH----------------------HH-GGGGT----
T ss_pred ----------------------------EEEEECCCCCcccCchhH----------------------hh-ccccCCCc-
Confidence 122232222210000000 00 00001111
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEe----cCCCcEEEEEeCCCcEEEEeCCCCceEEE
Q 000251 572 MIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH----PFNPRIAMSAGYDGKTIVWDIWEGIPIRI 647 (1784)
Q Consensus 572 sVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafS----Pdd~~lLaSgs~DG~IrIWDl~tG~~l~t 647 (1784)
..+++++ .+..|+|+...+.+..+......-....+.+- -..+..|++-..+|.|+++.+..-+.+..
T Consensus 226 -------~g~vVvv-Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~ 297 (395)
T PF08596_consen 226 -------PGYVVVV-SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKS 297 (395)
T ss_dssp --------EEEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEE
T ss_pred -------CcEEEEE-cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhc
Confidence 1133333 45689999998888776555222222334442 11456777888999999999999888888
Q ss_pred EeccC----cceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 000251 648 YEISR----FRLVDGKFSPDGASIILSDDVGQLYILNT 681 (1784)
Q Consensus 648 l~~~~----~~ItslafSPDGk~LAsgs~DG~I~IWdl 681 (1784)
+.... ..+....|+++|..++..+. ..+.++.+
T Consensus 298 ~~l~~~~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 298 VSLPPPLDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp EE-SS---HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred ccCCCccccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 77532 13446788999997776644 34444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00024 Score=88.32 Aligned_cols=198 Identities=14% Similarity=0.186 Sum_probs=127.4
Q ss_pred CEEEEEECCCC--CEEEEEcCCcEEEEEECCCCeE--EEEEecCCCCeEEEEEcC-CCCEEEEEe----CCCEEEEEECC
Q 000251 272 AVYCAIFDRSG--RYVITGSDDRLVKIWSMETAYC--LASCRGHEGDITDLAVSS-NNALVASAS----NDCIIRVWRLP 342 (1784)
Q Consensus 272 ~Vt~VaFSPDG--~~LATGS~DGtIkIWDl~Tgk~--l~tL~gH~~~VtsLafSp-Dg~lLASGS----~DGtIrVWDl~ 342 (1784)
.+.|+++.-+. -.++.|..+|.|.+-.+....- .....+|....++++|++ |...||+|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 45566655433 4678898999999887754321 123457888999999998 556777773 35779999998
Q ss_pred CC--Cee--EEecC-CCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCC
Q 000251 343 DG--LPI--SVLRG-HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 417 (1784)
Q Consensus 343 tg--k~i--~~L~g-H~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~ 417 (1784)
++ -+. ..+.+ -.....+++|..+.+ +|++|.....|.++|++........ -
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~k---lvlaGm~sr~~~ifdlRqs~~~~~s---------------------v 193 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTK---LVLAGMTSRSVHIFDLRQSLDSVSS---------------------V 193 (783)
T ss_pred cccCCCccccccccccccCccccccccCcc---hhhcccccchhhhhhhhhhhhhhhh---------------------h
Confidence 77 221 12222 334456788887665 7888888889999999843211110 1
Q ss_pred CCCceEEEEECC-CCCEEEEeeCCceEEEEcC-CCCCCCCCCCCCcceeeecCCC----CCceEEEEccCcccccccccC
Q 000251 418 QSHQIFCCAFNA-NGTVFVTGSSDTLARVWNA-CKPNTDDSDQPNHEIDVLSGHE----NDVNYVQFSGCAVASRFSLAD 491 (1784)
Q Consensus 418 h~~~V~sLafSp-dG~~LasGs~DG~IrVWDl-~tg~~~~s~~~~~~i~~l~gH~----~~V~sLafSpdglas~~~~~~ 491 (1784)
....+..+.+.| .+.++++-. ||.|.+||. ++- ..++..+.... ..+..++|+|..
T Consensus 194 nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rni--------enpl~~i~~~~N~~~~~l~~~aycPtr--------- 255 (783)
T KOG1008|consen 194 NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNI--------ENPLQIILRNENKKPKQLFALAYCPTR--------- 255 (783)
T ss_pred hhhhcccceecCCCCCceeccc-cCceeeccchhhh--------ccHHHHHhhCCCCcccceeeEEeccCC---------
Confidence 223466677888 777777665 999999994 221 11222222222 248889999864
Q ss_pred CCCCCCCCccccccccCCeEEEEeC-CCcEEEEeCCC
Q 000251 492 SSKEDSTPKFKNSWFCHDNIVTCSR-DGSAIIWIPRS 527 (1784)
Q Consensus 492 s~~~~~~~~~~~~~~~~~~LVSgS~-DGtIrIWDl~t 527 (1784)
...+++... .++|+++|+..
T Consensus 256 ----------------tglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 256 ----------------TGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ----------------cchhhhhccCcceEEEecccc
Confidence 245666655 47899998874
|
|
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00064 Score=90.51 Aligned_cols=79 Identities=14% Similarity=0.297 Sum_probs=72.7
Q ss_pred ccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHH
Q 000251 1688 RVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1766 (1784)
Q Consensus 1688 ~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s~i~~~a~~l~~~ 1766 (1784)
..+..++|+.|++...+++||.||..||||.|+|+.+-.+-|..-+.|..|+.+|++|..+||+|.+.+.+.++.+-..
T Consensus 1275 ~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~t~~~q~mls~ 1353 (1563)
T KOG0008|consen 1275 SSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASLTRQQQSMLSL 1353 (1563)
T ss_pred cCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHHHHHHHHHHHH
Confidence 3477789999999999999999999999999999999999999999999999999999999999999999988765443
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.04 E-value=1.5 Score=58.52 Aligned_cols=111 Identities=14% Similarity=0.188 Sum_probs=80.5
Q ss_pred CeeEEEEcCC-CCEEEEEec----------CCeEEEEECCCCceEEEEecC--CCCeEEEEEecCCCcEEEEEeCCCcEE
Q 000251 569 GVNMIVWSLD-NRFVLAAIM----------DCRICVWNAADGSLVHSLTGH--TESTYVLDVHPFNPRIAMSAGYDGKTI 635 (1784)
Q Consensus 569 ~VtsVafSPD-G~~LaSgs~----------DGsI~VWDl~tgklv~~L~gH--~~~VtsLafSPdd~~lLaSgs~DG~Ir 635 (1784)
.|.++.|..| +.++++|+. .|.|.||....+..+.....+ .+.|.++.. .+++++| +-...|+
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~--fngkllA--~In~~vr 851 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE--FNGKLLA--GINQSVR 851 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh--hCCeEEE--ecCcEEE
Confidence 3555668777 788888762 578888888774444433322 344555543 4678875 4567899
Q ss_pred EEeCCCCceEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000251 636 VWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 683 (1784)
Q Consensus 636 IWDl~tG~~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~s 683 (1784)
||+..+++.++.-..+..++..+.+.-.|..+|+|+--+.|.+.....
T Consensus 852 Lye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 852 LYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred EEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence 999999988887777888999999999999999999888777665543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.28 Score=63.98 Aligned_cols=68 Identities=10% Similarity=0.065 Sum_probs=45.6
Q ss_pred CCEEEEEeCCCEEEEEECCCCCeeEEecCCC-CceE----------EEEecCCCCccEEEEEEeCCCcEEEEecCCCccc
Q 000251 324 NALVASASNDCIIRVWRLPDGLPISVLRGHT-AAVT----------AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 392 (1784)
Q Consensus 324 g~lLASGS~DGtIrVWDl~tgk~i~~L~gH~-~~Vt----------sLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l 392 (1784)
+..|+.++.++.|.-.|..+|+.+-.+.... ..+. .+++.. . .++.++.|+.|...|..+|+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~--~---~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYD--G---KVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEEC--C---EEEEEcCCCEEEEEECCCCCEE
Confidence 4466667777888889999998877654211 1111 122221 2 5778889999999999999877
Q ss_pred ceee
Q 000251 393 PRIY 396 (1784)
Q Consensus 393 ~~i~ 396 (1784)
-...
T Consensus 144 W~~~ 147 (527)
T TIGR03075 144 WSKK 147 (527)
T ss_pred eecc
Confidence 6553
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.8 Score=57.47 Aligned_cols=286 Identities=14% Similarity=0.074 Sum_probs=171.4
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEE
Q 000251 294 VKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS-NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL 372 (1784)
Q Consensus 294 IkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS-~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~L 372 (1784)
+.+++..+......+..+. ....++..+++..+.... ....+.+-+................-..+++++.+. ...
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~--~vy 89 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGN--KVY 89 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCC--eEE
Confidence 6777777766666655433 566778888886444332 222455555442221111111113345678888876 245
Q ss_pred EEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeC---CceEEEEcCC
Q 000251 373 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS---DTLARVWNAC 449 (1784)
Q Consensus 373 aSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~---DG~IrVWDl~ 449 (1784)
++...+..|.+.|..+......+.. ......+++++++..+.++.. ++.+.+.|..
T Consensus 90 v~~~~~~~v~vid~~~~~~~~~~~v---------------------G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~ 148 (381)
T COG3391 90 VTTGDSNTVSVIDTATNTVLGSIPV---------------------GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA 148 (381)
T ss_pred EecCCCCeEEEEcCcccceeeEeee---------------------ccCCceEEECCCCCEEEEEecccCCceEEEEeCC
Confidence 5555678999999776665554422 114678999999987777665 6788888876
Q ss_pred CCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCC
Q 000251 450 KPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 529 (1784)
Q Consensus 450 tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~ 529 (1784)
+.. .+.....-..+ ..+++.|++ ...+++-..++.|.+.|..+..
T Consensus 149 t~~---------~~~~~~vG~~P-~~~a~~p~g-------------------------~~vyv~~~~~~~v~vi~~~~~~ 193 (381)
T COG3391 149 TNK---------VTATIPVGNTP-TGVAVDPDG-------------------------NKVYVTNSDDNTVSVIDTSGNS 193 (381)
T ss_pred CCe---------EEEEEecCCCc-ceEEECCCC-------------------------CeEEEEecCCCeEEEEeCCCcc
Confidence 532 22222222223 788888887 1245555688999999876422
Q ss_pred CCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecC---CeEEEEECCCCceEEE-E
Q 000251 530 SHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVHS-L 605 (1784)
Q Consensus 530 ~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSgs~D---GsI~VWDl~tgklv~~-L 605 (1784)
... ...............++++++|.++.+.... +.+.+.|..++..... +
T Consensus 194 v~~-------------------------~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~ 248 (381)
T COG3391 194 VVR-------------------------GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL 248 (381)
T ss_pred eec-------------------------cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence 100 0000011122334678999999977665443 5899999998887765 2
Q ss_pred ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCc---ceEEEEEcCC
Q 000251 606 TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF---RLVDGKFSPD 663 (1784)
Q Consensus 606 ~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~---~ItslafSPD 663 (1784)
..-......+.++|++..+.+.-+..+.+.+-|..+......+..+.. .+..+++.+.
T Consensus 249 ~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 249 PVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred ccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 222214567889995554444445568899999988887777654433 3444555443
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.031 Score=74.32 Aligned_cols=141 Identities=11% Similarity=0.118 Sum_probs=97.0
Q ss_pred CEEEEE-cCCcEEEEEECCCCeEEEEEecCCCC-eEEEEEcC-----CCCEEEEEeCCCEEEEEECCCC-CeeEEec---
Q 000251 283 RYVITG-SDDRLVKIWSMETAYCLASCRGHEGD-ITDLAVSS-----NNALVASASNDCIIRVWRLPDG-LPISVLR--- 351 (1784)
Q Consensus 283 ~~LATG-S~DGtIkIWDl~Tgk~l~tL~gH~~~-VtsLafSp-----Dg~lLASGS~DGtIrVWDl~tg-k~i~~L~--- 351 (1784)
.+|+.- .....|.-.|+++|+.+..+..|... |..++=.. +..-.+.|-.+..|..||.+-. ..+..-.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 444433 34578999999999999999877654 55554321 1234566777888999998753 2221111
Q ss_pred -CCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCC
Q 000251 352 -GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 430 (1784)
Q Consensus 352 -gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpd 430 (1784)
.......|++-+.+| +||+|+.+|.||+||- .|... ...+.+.+.+|.+|..+.|
T Consensus 574 Y~~~~~Fs~~aTt~~G----~iavgs~~G~IRLyd~-~g~~A-------------------KT~lp~lG~pI~~iDvt~D 629 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG----YIAVGSNKGDIRLYDR-LGKRA-------------------KTALPGLGDPIIGIDVTAD 629 (794)
T ss_pred cccCCCceEEEecCCc----eEEEEeCCCcEEeecc-cchhh-------------------hhcCCCCCCCeeEEEecCC
Confidence 234567888888887 7999999999999983 22211 1123345788999999999
Q ss_pred CCEEEEeeCCceEEEEcC
Q 000251 431 GTVFVTGSSDTLARVWNA 448 (1784)
Q Consensus 431 G~~LasGs~DG~IrVWDl 448 (1784)
|++|++.+ +..|.++++
T Consensus 630 GkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 630 GKWILATC-KTYLLLIDT 646 (794)
T ss_pred CcEEEEee-cceEEEEEE
Confidence 99998776 566777776
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.21 Score=61.44 Aligned_cols=108 Identities=13% Similarity=0.047 Sum_probs=57.3
Q ss_pred ccceEEEEEccCCCCEEEE-----EECCCCCEEEEEcC---CcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 000251 258 QKMQNIKRVRGHRNAVYCA-----IFDRSGRYVITGSD---DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVAS 329 (1784)
Q Consensus 258 ~~~k~l~tL~GH~~~Vt~V-----aFSPDG~~LATGS~---DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLAS 329 (1784)
.++..+.+|..+......+ +|.+||+.|+.+++ ...+.+.|+.+++..+.-.+.........++++++.|+-
T Consensus 18 ~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y 97 (386)
T PF14583_consen 18 DTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY 97 (386)
T ss_dssp TT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE
T ss_pred CCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE
Confidence 4455555565443332222 46789987776655 446777899998876654433233335667888888876
Q ss_pred EeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCC
Q 000251 330 ASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPR 365 (1784)
Q Consensus 330 GS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPd 365 (1784)
......|+-.|+.+.+....+......+-...|..+
T Consensus 98 v~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n 133 (386)
T PF14583_consen 98 VKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVAN 133 (386)
T ss_dssp EETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-
T ss_pred EECCCeEEEEECCcCcEEEEEECCcccccccceeeC
Confidence 666678999999998876666666777766677544
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.25 Score=58.65 Aligned_cols=142 Identities=18% Similarity=0.176 Sum_probs=86.2
Q ss_pred CCCCEEEEEcCCcEEEEEECC-CCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEe--------
Q 000251 280 RSGRYVITGSDDRLVKIWSME-TAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL-------- 350 (1784)
Q Consensus 280 PDG~~LATGS~DGtIkIWDl~-Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L-------- 350 (1784)
..++.|+.|..+| |.++++. .......+. ...|..|...++-+.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4678999999999 8999983 333333332 33499999999887777665 599999998765433311
Q ss_pred ------cCCCCceEEEE-ecCCCCccEEEEEEeCCCcEEEEecCCCc-----ccceeecCCCCCcccCCCCCCCCCCCCC
Q 000251 351 ------RGHTAAVTAIA-FSPRPGSVYQLLSSSDDGTCRIWDARYSQ-----FSPRIYIPRPSDAVAGRNMAPSSSAGPQ 418 (1784)
Q Consensus 351 ------~gH~~~VtsLa-fSPdg~~~~~LaSgs~DGtIrIWDl~tg~-----~l~~i~l~~~~~~~~g~~~~~~~s~~~h 418 (1784)
......+...+ -..... ...|++ .....|.+|.+.... ....+. -
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~-~~~L~v-a~kk~i~i~~~~~~~~~f~~~~ke~~---------------------l 137 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEG-SRRLCV-AVKKKILIYEWNDPRNSFSKLLKEIS---------------------L 137 (275)
T ss_pred ccccccccccCCeeEEeecccccc-ceEEEE-EECCEEEEEEEECCcccccceeEEEE---------------------c
Confidence 11223344333 112221 124444 444588888776531 222332 2
Q ss_pred CCceEEEEECCCCCEEEEeeCCceEEEEcCCCC
Q 000251 419 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKP 451 (1784)
Q Consensus 419 ~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg 451 (1784)
...+.+++|. ++.|++|..++ ..+.|+.++
T Consensus 138 p~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~ 167 (275)
T PF00780_consen 138 PDPPSSIAFL--GNKICVGTSKG-FYLIDLNTG 167 (275)
T ss_pred CCCcEEEEEe--CCEEEEEeCCc-eEEEecCCC
Confidence 3557888888 55777777555 778888654
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.079 Score=67.23 Aligned_cols=147 Identities=15% Similarity=0.111 Sum_probs=83.1
Q ss_pred EEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCC
Q 000251 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD 343 (1784)
Q Consensus 264 ~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~t 343 (1784)
+.+.........+.++|+|++++.+ .||.-.|+.....+.... +.-..++|.+.+ .+|+-...++|.|+.--.
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFK 98 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTE
T ss_pred ccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCc
Confidence 3444455567889999999999985 567888888555554332 234567898855 466666688999974323
Q ss_pred CCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceE
Q 000251 344 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 423 (1784)
Q Consensus 344 gk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~ 423 (1784)
......+.. ...+..|-. |. +|+..+ ++.|.+||+.+++.+.++.+ ..|.
T Consensus 99 ~~~~k~i~~-~~~~~~If~---G~---LL~~~~-~~~i~~yDw~~~~~i~~i~v----------------------~~vk 148 (443)
T PF04053_consen 99 NEVVKSIKL-PFSVEKIFG---GN---LLGVKS-SDFICFYDWETGKLIRRIDV----------------------SAVK 148 (443)
T ss_dssp E-TT------SS-EEEEE----SS---SEEEEE-TTEEEEE-TTT--EEEEESS-----------------------E-E
T ss_pred cccceEEcC-CcccceEEc---Cc---EEEEEC-CCCEEEEEhhHcceeeEEec----------------------CCCc
Confidence 333233331 123444433 43 454444 44899999999998888742 2378
Q ss_pred EEEECCCCCEEEEeeCCceEEEEcC
Q 000251 424 CCAFNANGTVFVTGSSDTLARVWNA 448 (1784)
Q Consensus 424 sLafSpdG~~LasGs~DG~IrVWDl 448 (1784)
.+.|+++|.+++..+.+ .+.|++.
T Consensus 149 ~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 149 YVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp EEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred EEEEECCCCEEEEEeCC-eEEEEEe
Confidence 99999999999988765 5777765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.76 E-value=3.5 Score=56.10 Aligned_cols=112 Identities=9% Similarity=-0.017 Sum_probs=74.0
Q ss_pred CCEEEEEcCCcEEEEEECCCCeEEEEEecCCCC--------eEEEEEc----------------CCCCEEEEEeCCCEEE
Q 000251 282 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGD--------ITDLAVS----------------SNNALVASASNDCIIR 337 (1784)
Q Consensus 282 G~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~--------VtsLafS----------------pDg~lLASGS~DGtIr 337 (1784)
+..|..++.++.|.-.|..||+.+-++...... ...+++. ..+..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557777788889999999999988876532210 1223332 1345788888999999
Q ss_pred EEECCCCCeeEEecCCCCceE-------------EEEecCC--CCccEEEEEEeC----------CCcEEEEecCCCccc
Q 000251 338 VWRLPDGLPISVLRGHTAAVT-------------AIAFSPR--PGSVYQLLSSSD----------DGTCRIWDARYSQFS 392 (1784)
Q Consensus 338 VWDl~tgk~i~~L~gH~~~Vt-------------sLafSPd--g~~~~~LaSgs~----------DGtIrIWDl~tg~~l 392 (1784)
-.|..+|+.+..+.. .+.|. .+.-.|- ++ .+++|+. +|.|+-+|+.+|+.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g---~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGT---TVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECC---EEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999999876632 22221 0111110 11 5666643 688999999999988
Q ss_pred ceeec
Q 000251 393 PRIYI 397 (1784)
Q Consensus 393 ~~i~l 397 (1784)
-.+..
T Consensus 350 W~~~~ 354 (764)
T TIGR03074 350 WAWDP 354 (764)
T ss_pred eEEec
Confidence 87764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.34 Score=56.98 Aligned_cols=205 Identities=13% Similarity=0.118 Sum_probs=112.5
Q ss_pred CCceEEEEECCCC-CEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCC-CCCceEEEEccCcccccccccCCCCCC
Q 000251 419 SHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH-ENDVNYVQFSGCAVASRFSLADSSKED 496 (1784)
Q Consensus 419 ~~~V~sLafSpdG-~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH-~~~V~sLafSpdglas~~~~~~s~~~~ 496 (1784)
...+..|+|+|+. .++++....+.|..++.. +..+..+.-. .+..-.|++..++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~----------G~vlr~i~l~g~~D~EgI~y~g~~-------------- 76 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD----------GKVLRRIPLDGFGDYEGITYLGNG-------------- 76 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT------------EEEEEE-SS-SSEEEEEE-STT--------------
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC----------CCEEEEEeCCCCCCceeEEEECCC--------------
Confidence 3458999999974 577777778888877763 2233333222 3566777776554
Q ss_pred CCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEc
Q 000251 497 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 576 (1784)
Q Consensus 497 ~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS 576 (1784)
.++++--.++.+.++++........... ...+.+.. ...+...+-.++|+
T Consensus 77 ------------~~vl~~Er~~~L~~~~~~~~~~~~~~~~-~~~~~l~~-----------------~~~~N~G~EGla~D 126 (248)
T PF06977_consen 77 ------------RYVLSEERDQRLYIFTIDDDTTSLDRAD-VQKISLGF-----------------PNKGNKGFEGLAYD 126 (248)
T ss_dssp ------------EEEEEETTTTEEEEEEE----TT--EEE-EEEEE--------------------S---SS--EEEEEE
T ss_pred ------------EEEEEEcCCCcEEEEEEeccccccchhh-ceEEeccc-----------------ccCCCcceEEEEEc
Confidence 3444444688999988853221100000 00111110 01244568999999
Q ss_pred CCCCEEEEEecCCeEEEEECCC---CceEEEE--------ecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000251 577 LDNRFVLAAIMDCRICVWNAAD---GSLVHSL--------TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 645 (1784)
Q Consensus 577 PDG~~LaSgs~DGsI~VWDl~t---gklv~~L--------~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l 645 (1784)
+.+..|+++-...-..||.+.. +..+... ......+.+++++|..+.+++.......|.++| .+|+.+
T Consensus 127 ~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~ 205 (248)
T PF06977_consen 127 PKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVV 205 (248)
T ss_dssp TTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EE
T ss_pred CCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEE
Confidence 9988888877766666666643 2222211 123345789999998888888888899999999 588888
Q ss_pred EEEeccC---------cceEEEEEcCCCCEEEEEeCCCeEEEE
Q 000251 646 RIYEISR---------FRLVDGKFSPDGASIILSDDVGQLYIL 679 (1784)
Q Consensus 646 ~tl~~~~---------~~ItslafSPDGk~LAsgs~DG~I~IW 679 (1784)
..+.... ...-.|+|.++|++.+++ +-+..++|
T Consensus 206 ~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 206 SSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred EEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 7765333 135579999999766555 55566655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.015 Score=74.08 Aligned_cols=116 Identities=15% Similarity=0.251 Sum_probs=89.7
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEE-EecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000251 567 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS-LTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 645 (1784)
Q Consensus 567 ~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~-L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l 645 (1784)
...|.--+++..+++++.|+.-|.+++|+-..|+.... ..+..+.+..+..|+ ...++|.|+..|.|.|+-+..+.+-
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCC
Confidence 34455567788999999999999999999877765432 334445566677787 7788889999999999988764321
Q ss_pred -----EEEe-ccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000251 646 -----RIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 683 (1784)
Q Consensus 646 -----~tl~-~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~s 683 (1784)
..+. .|...|++++|++||..|.+|+..|+|..-.+.+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1111 2456899999999999999999999999988876
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.11 Score=65.71 Aligned_cols=208 Identities=16% Similarity=0.094 Sum_probs=114.4
Q ss_pred CEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCC-CcEEEEecCCCcccceeecCCCCCcccCCCCCCC
Q 000251 334 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD-GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 412 (1784)
Q Consensus 334 GtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~D-GtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~ 412 (1784)
..+.+-|.. |.....+..-...+..-+|+|++....++..-... ..+.++++.++........
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~--------------- 236 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF--------------- 236 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc---------------
Confidence 344444543 55556666566778888999998744333333333 4689999998875444321
Q ss_pred CCCCCCCCceEEEEECCCCCEEEEee-CCc--eEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccc
Q 000251 413 SSAGPQSHQIFCCAFNANGTVFVTGS-SDT--LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 489 (1784)
Q Consensus 413 ~s~~~h~~~V~sLafSpdG~~LasGs-~DG--~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~ 489 (1784)
.+.-..-+|+|||+.|+... .|| .|+++|+.... +..+..-.+.-..-.|+|+|
T Consensus 237 ------~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~----------~~~Lt~~~gi~~~Ps~spdG------- 293 (425)
T COG0823 237 ------NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN----------LPRLTNGFGINTSPSWSPDG------- 293 (425)
T ss_pred ------CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc----------ceecccCCccccCccCCCCC-------
Confidence 12223457999998776544 455 45666665432 11222222222355677877
Q ss_pred cCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCC
Q 000251 490 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG 569 (1784)
Q Consensus 490 ~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~ 569 (1784)
...+++.+..|.-.||-+.. .+....++......
T Consensus 294 ------------------~~ivf~Sdr~G~p~I~~~~~----------------------------~g~~~~riT~~~~~ 327 (425)
T COG0823 294 ------------------SKIVFTSDRGGRPQIYLYDL----------------------------EGSQVTRLTFSGGG 327 (425)
T ss_pred ------------------CEEEEEeCCCCCcceEEECC----------------------------CCCceeEeeccCCC
Confidence 23445566677766664432 01111222222222
Q ss_pred eeEEEEcCCCCEEEEEecC-Ce--EEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEE
Q 000251 570 VNMIVWSLDNRFVLAAIMD-CR--ICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS 627 (1784)
Q Consensus 570 VtsVafSPDG~~LaSgs~D-Gs--I~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaS 627 (1784)
-..-.|||||++|+..+.. |. |.+.++.++.-++.+. +......-.|.|++..++.+
T Consensus 328 ~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 328 NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEe
Confidence 2366899999999887643 43 7777777666544443 22223345666633333333
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0046 Score=47.71 Aligned_cols=39 Identities=31% Similarity=0.682 Sum_probs=35.5
Q ss_pred ceEEEEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEE
Q 000251 260 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS 298 (1784)
Q Consensus 260 ~k~l~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWD 298 (1784)
.+++..+.+|...|.++.|++++.++++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 356778889999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.65 E-value=1.1 Score=56.78 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=46.8
Q ss_pred EEECCCCCEEEEEcCC----------c-EEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECC
Q 000251 276 AIFDRSGRYVITGSDD----------R-LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 342 (1784)
Q Consensus 276 VaFSPDG~~LATGS~D----------G-tIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~ 342 (1784)
++.+|.|..||...++ . .|.||+.. |+++.++.-..+.|.++.|+.+. .|++...||.++++|+.
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 4555656555555433 2 59999965 77777766545899999999865 55566689999999985
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.69 Score=58.44 Aligned_cols=253 Identities=15% Similarity=0.177 Sum_probs=125.0
Q ss_pred eEEEEEcCCCCEEEEE-eCC----CEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCC-----------
Q 000251 315 ITDLAVSSNNALVASA-SND----CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD----------- 378 (1784)
Q Consensus 315 VtsLafSpDg~lLASG-S~D----GtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~D----------- 378 (1784)
+..++++|||++||.+ +.. .+|+++|+.+|+.+...-.. .....+.|.+++. .|+....+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~---~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGK---GFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSS---EEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCC---EEEEEEeCcccccccCCCC
Confidence 3467899999988865 222 46999999999776532111 1123499999987 34433322
Q ss_pred CcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeC---C-ceEEEEcCCCCCCC
Q 000251 379 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS---D-TLARVWNACKPNTD 454 (1784)
Q Consensus 379 GtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~---D-G~IrVWDl~tg~~~ 454 (1784)
..|.+|.+.+......+..... ........+..++|+++|+.... + ..+.+.++....
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~----------------~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~-- 263 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEP----------------DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG-- 263 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-T----------------TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT--
T ss_pred cEEEEEECCCChHhCeeEEeec----------------CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC--
Confidence 2377778776654322322111 01112667889999998776443 2 456777775421
Q ss_pred CCCCCCcceeeecCCCCCceE-EEEccCcccccccccCCCCCCCCCccccccccCCeEEEE---eCCCcEEEEeCCCCCC
Q 000251 455 DSDQPNHEIDVLSGHENDVNY-VQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGSAIIWIPRSRRS 530 (1784)
Q Consensus 455 ~s~~~~~~i~~l~gH~~~V~s-LafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSg---S~DGtIrIWDl~t~~~ 530 (1784)
.+......+......+.. +....+ .+++.. ...+.|...++.....
T Consensus 264 ---~~~~~~~~l~~~~~~~~~~v~~~~~---------------------------~~yi~Tn~~a~~~~l~~~~l~~~~~ 313 (414)
T PF02897_consen 264 ---SPDAKPKLLSPREDGVEYYVDHHGD---------------------------RLYILTNDDAPNGRLVAVDLADPSP 313 (414)
T ss_dssp ---TSS-SEEEEEESSSS-EEEEEEETT---------------------------EEEEEE-TT-TT-EEEEEETTSTSG
T ss_pred ---CCcCCcEEEeCCCCceEEEEEccCC---------------------------EEEEeeCCCCCCcEEEEeccccccc
Confidence 011223333333333322 222211 122222 2234555555553110
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE-EecCC--eEEEEECCCCceEEEEec
Q 000251 531 HPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA-AIMDC--RICVWNAADGSLVHSLTG 607 (1784)
Q Consensus 531 ~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS-gs~DG--sI~VWDl~tgklv~~L~g 607 (1784)
..| ...+..+...+.-..+...+.+|+. ...++ .|+++++..+.....+..
T Consensus 314 ----~~~----------------------~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~ 367 (414)
T PF02897_consen 314 ----AEW----------------------WTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPL 367 (414)
T ss_dssp ----GGE----------------------EEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEES
T ss_pred ----ccc----------------------eeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecC
Confidence 011 1133344443333334444555554 44444 488999984444444433
Q ss_pred -CCCCeEEEEEecCCCcEEEEEeC---CCcEEEEeCCCCceE
Q 000251 608 -HTESTYVLDVHPFNPRIAMSAGY---DGKTIVWDIWEGIPI 645 (1784)
Q Consensus 608 -H~~~VtsLafSPdd~~lLaSgs~---DG~IrIWDl~tG~~l 645 (1784)
-.+.|..+...+....+.++.+. -++|..||+.+++..
T Consensus 368 p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 368 PEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp SSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 33445666555645555554432 346888888888654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.13 Score=65.07 Aligned_cols=132 Identities=20% Similarity=0.126 Sum_probs=81.9
Q ss_pred EEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe---CC-CEEEEEECCCCCeeEEecCCCCceEEEEecCCCCc
Q 000251 293 LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS---ND-CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 368 (1784)
Q Consensus 293 tIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS---~D-GtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~ 368 (1784)
.+.+=|.. |.....+..-...+..-+|+|++..++..+ .. ..|.++++.+++....+. ..+.-...+|+|||+
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~- 250 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS- 250 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC-
Confidence 34444444 555666665667788889999999766542 22 469999999987655544 334455678999997
Q ss_pred cEEEEEEeCCCcEEE--EecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeC-Cce--E
Q 000251 369 VYQLLSSSDDGTCRI--WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTL--A 443 (1784)
Q Consensus 369 ~~~LaSgs~DGtIrI--WDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~-DG~--I 443 (1784)
.++++...||...| .|+.++... .+.. ..+.-..=.|+|||+.|+..+. .|. |
T Consensus 251 -~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~--------------------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I 308 (425)
T COG0823 251 -KLAFSSSRDGSPDIYLMDLDGKNLP-RLTN--------------------GFGINTSPSWSPDGSKIVFTSDRGGRPQI 308 (425)
T ss_pred -EEEEEECCCCCccEEEEcCCCCcce-eccc--------------------CCccccCccCCCCCCEEEEEeCCCCCcce
Confidence 46677777877555 566665522 2210 0111114469999998877654 343 4
Q ss_pred EEEcCC
Q 000251 444 RVWNAC 449 (1784)
Q Consensus 444 rVWDl~ 449 (1784)
.+++..
T Consensus 309 ~~~~~~ 314 (425)
T COG0823 309 YLYDLE 314 (425)
T ss_pred EEECCC
Confidence 555553
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.14 Score=66.25 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=97.3
Q ss_pred ECCCCCEEEEE-cCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe-------------------------
Q 000251 278 FDRSGRYVITG-SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS------------------------- 331 (1784)
Q Consensus 278 FSPDG~~LATG-S~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS------------------------- 331 (1784)
++|||+.|... -..+.+.+.|.++.+...++.-- +....++++++|+++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 45566655322 23466777777776666665432 2335566777777666654
Q ss_pred ---------------CCCEEEEEECCC----C-CeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcc
Q 000251 332 ---------------NDCIIRVWRLPD----G-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 391 (1784)
Q Consensus 332 ---------------~DGtIrVWDl~t----g-k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~ 391 (1784)
.++.|.+.|..+ + ..+..+. -......++++||++ +.++++..+.+|.|.|+.+.+.
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGk--ylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGK--YFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCC--EEEEeCCCCCcEEEEEChhhhh
Confidence 134577777766 3 3333333 345678899999998 4566677799999999987553
Q ss_pred cceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCC
Q 000251 392 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 450 (1784)
Q Consensus 392 l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~t 450 (1784)
...-.+ .+...+.+ ...-.......+|.++|..+.+-.-|..|..|++.+
T Consensus 356 ~~~~~~-~~~~~vva--------evevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 356 LFDGKI-KPRDAVVA--------EPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhccC-CccceEEE--------eeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 211000 00000000 001133356788999999888888899999999864
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.98 Score=57.10 Aligned_cols=250 Identities=18% Similarity=0.174 Sum_probs=129.9
Q ss_pred eEEEEecCCCCccEEEEEEeCCC----cEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCC
Q 000251 357 VTAIAFSPRPGSVYQLLSSSDDG----TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 432 (1784)
Q Consensus 357 VtsLafSPdg~~~~~LaSgs~DG----tIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~ 432 (1784)
+..++++|+++ .++++.+..| +|+++|+.+++.+..... ......++|.++++
T Consensus 126 ~~~~~~Spdg~--~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~---------------------~~~~~~~~W~~d~~ 182 (414)
T PF02897_consen 126 LGGFSVSPDGK--RLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE---------------------NPKFSSVSWSDDGK 182 (414)
T ss_dssp EEEEEETTTSS--EEEEEEEETTSSEEEEEEEETTTTEEEEEEEE---------------------EEESEEEEECTTSS
T ss_pred eeeeeECCCCC--EEEEEecCCCCceEEEEEEECCCCcCcCCccc---------------------ccccceEEEeCCCC
Confidence 44678899987 2333434444 499999999976543210 11123489999988
Q ss_pred EEEEeeCC-----------ceEEEEcCCCCCCCCCCCCCcceeeecCCCCC--ceEEEEccCcccccccccCCCCCCCCC
Q 000251 433 VFVTGSSD-----------TLARVWNACKPNTDDSDQPNHEIDVLSGHEND--VNYVQFSGCAVASRFSLADSSKEDSTP 499 (1784)
Q Consensus 433 ~LasGs~D-----------G~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~--V~sLafSpdglas~~~~~~s~~~~~~~ 499 (1784)
.|+....+ ..|+.|.+.++. ......+...... ...+..++++
T Consensus 183 ~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~-------~~d~lvfe~~~~~~~~~~~~~s~d~----------------- 238 (414)
T PF02897_consen 183 GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQ-------SEDELVFEEPDEPFWFVSVSRSKDG----------------- 238 (414)
T ss_dssp EEEEEECSTTTSS-CCGCCEEEEEEETTS-G-------GG-EEEEC-TTCTTSEEEEEE-TTS-----------------
T ss_pred EEEEEEeCcccccccCCCCcEEEEEECCCCh-------HhCeeEEeecCCCcEEEEEEecCcc-----------------
Confidence 76655432 247777775421 1112333343333 3455666654
Q ss_pred ccccccccCCeEE-EEeCC---CcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEE
Q 000251 500 KFKNSWFCHDNIV-TCSRD---GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 575 (1784)
Q Consensus 500 ~~~~~~~~~~~LV-SgS~D---GtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf 575 (1784)
.+|+ ..... ..+.+.++.... ........+......+....-
T Consensus 239 ---------~~l~i~~~~~~~~s~v~~~d~~~~~-------------------------~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 239 ---------RYLFISSSSGTSESEVYLLDLDDGG-------------------------SPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp ---------SEEEEEEESSSSEEEEEEEECCCTT-------------------------TSS-SEEEEEESSSS-EEEEE
T ss_pred ---------cEEEEEEEccccCCeEEEEeccccC-------------------------CCcCCcEEEeCCCCceEEEEE
Confidence 3433 33332 235555555310 001112222223333433333
Q ss_pred cCCCCEEEEE---ecCCeEEEEECCCCce---EEEEecCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCceEEE
Q 000251 576 SLDNRFVLAA---IMDCRICVWNAADGSL---VHSLTGHTESTYVLDVHPFNPRIAMSAGYDG--KTIVWDIWEGIPIRI 647 (1784)
Q Consensus 576 SPDG~~LaSg---s~DGsI~VWDl~tgkl---v~~L~gH~~~VtsLafSPdd~~lLaSgs~DG--~IrIWDl~tG~~l~t 647 (1784)
...+.+++.. ...+.|...++.+... ...+..|...+.-..+..++..+++..-.++ .|+++++..+.....
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~ 364 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESRE 364 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEee
Confidence 3344444443 2346788888877653 3356666664444444444667777776666 578899974555544
Q ss_pred Eec-cCcceEEEEEcCCCCEEEEE--e--CCCeEEEEECCCCccc
Q 000251 648 YEI-SRFRLVDGKFSPDGASIILS--D--DVGQLYILNTGQGESQ 687 (1784)
Q Consensus 648 l~~-~~~~ItslafSPDGk~LAsg--s--~DG~I~IWdl~sGe~~ 687 (1784)
+.. ..+.|..+...+++..|... + .-++|+.||+.+|+..
T Consensus 365 ~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 365 IPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred ecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 443 34456666666777766543 2 2468999999988754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.28 E-value=2.2 Score=50.62 Aligned_cols=256 Identities=14% Similarity=0.146 Sum_probs=128.6
Q ss_pred CCCCEEEEEeCCCEEEEEECCC-CCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCC
Q 000251 322 SNNALVASASNDCIIRVWRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 400 (1784)
Q Consensus 322 pDg~lLASGS~DGtIrVWDl~t-gk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~ 400 (1784)
..++.|+.|+.+| |.++++.. ........ ...|..+...++-+ .|++-+ |+.|.++++..-...........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~---~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELN---LLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccC---EEEEEc-CCccEEEEchhhccccccccccc
Confidence 3578999999998 89999833 33333332 33499999999765 444443 59999999876553332100000
Q ss_pred CCcccCCCCCCCCCCCCCCCceEEEE--ECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCC-cceeeecCCCCCceEEE
Q 000251 401 SDAVAGRNMAPSSSAGPQSHQIFCCA--FNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN-HEIDVLSGHENDVNYVQ 477 (1784)
Q Consensus 401 ~~~~~g~~~~~~~s~~~h~~~V~sLa--fSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~-~~i~~l~gH~~~V~sLa 477 (1784)
. ..............+..++ -...+...++......|.+|....... .. .....+. -...+.+++
T Consensus 78 ~------~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~-----~f~~~~ke~~-lp~~~~~i~ 145 (275)
T PF00780_consen 78 P------KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRN-----SFSKLLKEIS-LPDPPSSIA 145 (275)
T ss_pred c------ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcc-----cccceeEEEE-cCCCcEEEE
Confidence 0 0000000111223344444 122333333344455888888754211 11 2223322 236677888
Q ss_pred EccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCC
Q 000251 478 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 557 (1784)
Q Consensus 478 fSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~ 557 (1784)
|.+ +.|+.|..++ ..+.|+.++.......... ..
T Consensus 146 ~~~----------------------------~~i~v~~~~~-f~~idl~~~~~~~l~~~~~-----------------~~ 179 (275)
T PF00780_consen 146 FLG----------------------------NKICVGTSKG-FYLIDLNTGSPSELLDPSD-----------------SS 179 (275)
T ss_pred EeC----------------------------CEEEEEeCCc-eEEEecCCCCceEEeCccC-----------------Cc
Confidence 774 4666666554 6677777543211100000 00
Q ss_pred CCceeccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEE--EEecCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 000251 558 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH--SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 635 (1784)
Q Consensus 558 ~~~~~l~~h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~--~L~gH~~~VtsLafSPdd~~lLaSgs~DG~Ir 635 (1784)
...........++..+..+ ++.+|++- |..-.+.|. .|+..+ .+.-. .....+++.. + +|+..+ ++.|.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~-~~p~~~~~~~--p-yli~~~-~~~iE 250 (275)
T PF00780_consen 180 SSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWS-SAPQSVAYSS--P-YLIAFS-SNSIE 250 (275)
T ss_pred chhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEEcC-CchhEEEEEC--C-EEEEEC-CCEEE
Confidence 0001111122334444443 45666653 333333343 555443 33322 2345566643 3 444443 46699
Q ss_pred EEeCCCCceEEEEecc
Q 000251 636 VWDIWEGIPIRIYEIS 651 (1784)
Q Consensus 636 IWDl~tG~~l~tl~~~ 651 (1784)
||++.+|++++++...
T Consensus 251 V~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 251 VRSLETGELVQTIPLP 266 (275)
T ss_pred EEECcCCcEEEEEECC
Confidence 9999999999988733
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.00064 Score=80.63 Aligned_cols=71 Identities=18% Similarity=0.122 Sum_probs=65.3
Q ss_pred cccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHH
Q 000251 1697 KLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLV 1767 (1784)
Q Consensus 1697 ~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s~i~~~a~~l~~~~ 1767 (1784)
-++.....|+|.++|..|||+.||+.+++-++|-.+.++..|.++|-.||..||.+++.+...|+.|.-+-
T Consensus 42 fplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~aaKrL~~v~ 112 (418)
T KOG1828|consen 42 FPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPIVAAKRLCPVR 112 (418)
T ss_pred cccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCccccccccccchhh
Confidence 34455688999999999999999999999999999999999999999999999999999999999887653
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.49 Score=55.63 Aligned_cols=170 Identities=10% Similarity=0.118 Sum_probs=98.2
Q ss_pred EEEEccCCCCEEEEEECCCCC-EEEEEcCCcEEEEEECCCCeEEEEEecC-CCCeEEEEEcCCCCEEEEEeCCCEEEEEE
Q 000251 263 IKRVRGHRNAVYCAIFDRSGR-YVITGSDDRLVKIWSMETAYCLASCRGH-EGDITDLAVSSNNALVASASNDCIIRVWR 340 (1784)
Q Consensus 263 l~tL~GH~~~Vt~VaFSPDG~-~LATGS~DGtIkIWDl~Tgk~l~tL~gH-~~~VtsLafSpDg~lLASGS~DGtIrVWD 340 (1784)
.+.|.|-...|..++|+|+.+ ++|+....+.|...+. +|+.++++.-. .+..-.|++..++.++++--.++.+.+.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 456777777899999999865 5556667888888886 58888887633 36688999988887777666689999998
Q ss_pred CCCCC---ee---EEec-----CCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCC---CcccceeecCCCCCcccC
Q 000251 341 LPDGL---PI---SVLR-----GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY---SQFSPRIYIPRPSDAVAG 406 (1784)
Q Consensus 341 l~tgk---~i---~~L~-----gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~t---g~~l~~i~l~~~~~~~~g 406 (1784)
+.... .. ..+. .+...+-.|+|.+.++ .|+.+-...-..+|.+.. ...+..... . ..
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~---~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~---~-~~-- 163 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN---RLFVAKERKPKRLYEVNGFPGGFDLFVSDD---Q-DL-- 163 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTT---EEEEEEESSSEEEEEEESTT-SS--EEEE----H-HH--
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCC---EEEEEeCCCChhhEEEccccCccceeeccc---c-cc--
Confidence 84321 11 1121 2445689999999876 666677776677776654 111111100 0 00
Q ss_pred CCCCCCCCCCCCCCceEEEEECCC-CCEEEEeeCCceEEEEcC
Q 000251 407 RNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNA 448 (1784)
Q Consensus 407 ~~~~~~~s~~~h~~~V~sLafSpd-G~~LasGs~DG~IrVWDl 448 (1784)
.........+.+++++|. |.+++....+..|.++|.
T Consensus 164 ------~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 164 ------DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR 200 (248)
T ss_dssp ------H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T
T ss_pred ------ccccceeccccceEEcCCCCeEEEEECCCCeEEEECC
Confidence 001112334788999985 566777777888888885
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.016 Score=72.92 Aligned_cols=93 Identities=12% Similarity=0.084 Sum_probs=78.5
Q ss_pred CCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeE-EEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEE
Q 000251 271 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT-DLAVSSNNALVASASNDCIIRVWRLPDGLPISV 349 (1784)
Q Consensus 271 ~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~Vt-sLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~ 349 (1784)
..|.-+.|+|.-..||++..+|.|.+..+. .+.+.++.-|...++ +++|.|||++||.|-.||+|++.|+.+|..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 457788899999999999999999999988 788888887888888 999999999999999999999999999877655
Q ss_pred e-cCCCCceEEEEecC
Q 000251 350 L-RGHTAAVTAIAFSP 364 (1784)
Q Consensus 350 L-~gH~~~VtsLafSP 364 (1784)
. ..-...|.++-|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 2 22345666666664
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0025 Score=79.55 Aligned_cols=165 Identities=19% Similarity=0.305 Sum_probs=106.0
Q ss_pred EEccCCCCEEEEEECC-CCCEEEEEc----CCcEEEEEECCCCe--EE--EEEe-cCCCCeEEEEEcCCCCEEEEEeCCC
Q 000251 265 RVRGHRNAVYCAIFDR-SGRYVITGS----DDRLVKIWSMETAY--CL--ASCR-GHEGDITDLAVSSNNALVASASNDC 334 (1784)
Q Consensus 265 tL~GH~~~Vt~VaFSP-DG~~LATGS----~DGtIkIWDl~Tgk--~l--~tL~-gH~~~VtsLafSpDg~lLASGS~DG 334 (1784)
...+|...++|+||++ |...||.|- .|..+.|||+.++- +. ..+. +....+.+++|-.+.++|.+|....
T Consensus 97 ~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr 176 (783)
T KOG1008|consen 97 VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSR 176 (783)
T ss_pred ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccc
Confidence 4567888999999998 566788773 36789999998771 11 1122 2345566899998999999999999
Q ss_pred EEEEEECCCCCeeEEecCCCCceEEEEecC-CCCccEEEEEEeCCCcEEEEec-CCCcc-cceeecCCCCCcccCCCCCC
Q 000251 335 IIRVWRLPDGLPISVLRGHTAAVTAIAFSP-RPGSVYQLLSSSDDGTCRIWDA-RYSQF-SPRIYIPRPSDAVAGRNMAP 411 (1784)
Q Consensus 335 tIrVWDl~tgk~i~~L~gH~~~VtsLafSP-dg~~~~~LaSgs~DGtIrIWDl-~tg~~-l~~i~l~~~~~~~~g~~~~~ 411 (1784)
.|.++|++.. +.....-.+..|..+...| .++ ++++.. ||.|.+||. ..-+. +..+.
T Consensus 177 ~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~n---Y~cs~~-dg~iAiwD~~rnienpl~~i~--------------- 236 (783)
T KOG1008|consen 177 SVHIFDLRQS-LDSVSSVNTKYVQGITVDPFSPN---YFCSNS-DGDIAIWDTYRNIENPLQIIL--------------- 236 (783)
T ss_pred hhhhhhhhhh-hhhhhhhhhhhcccceecCCCCC---ceeccc-cCceeeccchhhhccHHHHHh---------------
Confidence 9999998632 1111112344566677777 333 565555 999999994 32211 11110
Q ss_pred CCCCCCCCCceEEEEECCC--CCEEEEeeCCceEEEEcCCC
Q 000251 412 SSSAGPQSHQIFCCAFNAN--GTVFVTGSSDTLARVWNACK 450 (1784)
Q Consensus 412 ~~s~~~h~~~V~sLafSpd--G~~LasGs~DG~IrVWDl~t 450 (1784)
........++..++|.|. |...+..-..++|++|++..
T Consensus 237 -~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 237 -RNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred -hCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 011123346899999994 43333344567999999864
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.23 E-value=1.8 Score=54.37 Aligned_cols=265 Identities=11% Similarity=0.066 Sum_probs=155.5
Q ss_pred CEEEEEECCCCCEEEEE-cCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE-EEEeCCCEEEEEECCCCCeeEE
Q 000251 272 AVYCAIFDRSGRYVITG-SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV-ASASNDCIIRVWRLPDGLPISV 349 (1784)
Q Consensus 272 ~Vt~VaFSPDG~~LATG-S~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lL-ASGS~DGtIrVWDl~tgk~i~~ 349 (1784)
....+++.++|..+... .....+.+-+............-...-..+++++.+..+ ++...+..|.+.|..+.+.+..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 45567788888544333 222256666655222222222221344677888888844 4444568999999877777666
Q ss_pred ecCCCCceEEEEecCCCCccEEEEEEe---CCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEE
Q 000251 350 LRGHTAAVTAIAFSPRPGSVYQLLSSS---DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 426 (1784)
Q Consensus 350 L~gH~~~VtsLafSPdg~~~~~LaSgs---~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLa 426 (1784)
..--. ....++|+|+++ .+..+. .++++.+.|..++.....+.. ......++
T Consensus 112 ~~vG~-~P~~~~~~~~~~---~vYV~n~~~~~~~vsvid~~t~~~~~~~~v---------------------G~~P~~~a 166 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGK---YVYVANAGNGNNTVSVIDAATNKVTATIPV---------------------GNTPTGVA 166 (381)
T ss_pred eeecc-CCceEEECCCCC---EEEEEecccCCceEEEEeCCCCeEEEEEec---------------------CCCcceEE
Confidence 54222 667899999987 343333 378899999888876665422 11127899
Q ss_pred ECCCCCEEEEee-CCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCcccccc
Q 000251 427 FNANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 505 (1784)
Q Consensus 427 fSpdG~~LasGs-~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~ 505 (1784)
++|+|..+++.. .++.|.+.|........ ..... ...-...-..+.+.+++
T Consensus 167 ~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~----~~~~~~~P~~i~v~~~g----------------------- 218 (381)
T COG3391 167 VDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGS----LVGVGTGPAGIAVDPDG----------------------- 218 (381)
T ss_pred ECCCCCeEEEEecCCCeEEEEeCCCcceec-ccccc----ccccCCCCceEEECCCC-----------------------
Confidence 999999666555 78899999975432211 00000 11112223456666665
Q ss_pred ccCCeEEEEeC--CCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEE
Q 000251 506 FCHDNIVTCSR--DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVL 583 (1784)
Q Consensus 506 ~~~~~LVSgS~--DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~La 583 (1784)
....++... ++.+.+.|..++..... ....... ....+.++|+|+++.
T Consensus 219 --~~~yV~~~~~~~~~v~~id~~~~~v~~~---------------------------~~~~~~~-~~~~v~~~p~g~~~y 268 (381)
T COG3391 219 --NRVYVANDGSGSNNVLKIDTATGNVTAT---------------------------DLPVGSG-APRGVAVDPAGKAAY 268 (381)
T ss_pred --CEEEEEeccCCCceEEEEeCCCceEEEe---------------------------ccccccC-CCCceeECCCCCEEE
Confidence 123333333 36777777775331100 0001111 345678999999998
Q ss_pred EEec-CCeEEEEECCCCceEEEEecCCC---CeEEEEEec
Q 000251 584 AAIM-DCRICVWNAADGSLVHSLTGHTE---STYVLDVHP 619 (1784)
Q Consensus 584 Sgs~-DGsI~VWDl~tgklv~~L~gH~~---~VtsLafSP 619 (1784)
+... .+.+.+.|..+......+..... .+..+++.+
T Consensus 269 v~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 269 VANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred EEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 8744 48899999988887776654332 345555554
|
|
| >KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0036 Score=74.48 Aligned_cols=71 Identities=7% Similarity=-0.033 Sum_probs=62.9
Q ss_pred ccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHH
Q 000251 1694 GVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSD 1765 (1784)
Q Consensus 1694 ~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s~i~~~a~~l~~ 1765 (1784)
.+..++....+|-|.-+|++|+|.+|++.+..+++|.+ -+|..|..+|+.||-|||+++..++..|+++-.
T Consensus 228 ~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyelank~lh 298 (418)
T KOG1828|consen 228 YLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELANKQLH 298 (418)
T ss_pred hhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHHHhhhh
Confidence 34445555678999999999999999999999999999 899999999999999999999999999887643
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.014 Score=44.92 Aligned_cols=39 Identities=36% Similarity=0.632 Sum_probs=35.2
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEE
Q 000251 302 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 340 (1784)
Q Consensus 302 gk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWD 340 (1784)
+.++..+..|...|.++.|.+++.++++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456777888999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.23 Score=61.76 Aligned_cols=138 Identities=11% Similarity=0.143 Sum_probs=97.8
Q ss_pred EEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE-------EEEEeCCCEEEEEECCC-CC-eeEEecCCC-
Q 000251 285 VITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL-------VASASNDCIIRVWRLPD-GL-PISVLRGHT- 354 (1784)
Q Consensus 285 LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~l-------LASGS~DGtIrVWDl~t-gk-~i~~L~gH~- 354 (1784)
|.++.....|+--|++.|+.+.+..-|.. |.-+.+.|+++. -+.|-.|..|.-||.+- +. .+...++|.
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 34455556788889999999999987766 888888887641 23456678899999763 22 333334443
Q ss_pred ---CceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCC
Q 000251 355 ---AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 431 (1784)
Q Consensus 355 ---~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG 431 (1784)
....|.+-..+| ++++|+.+|-|++||- .+....+ .+.+.+..|..+..+.+|
T Consensus 428 ~~k~nFsc~aTT~sG----~IvvgS~~GdIRLYdr-i~~~AKT-------------------AlPgLG~~I~hVdvtadG 483 (644)
T KOG2395|consen 428 STKNNFSCFATTESG----YIVVGSLKGDIRLYDR-IGRRAKT-------------------ALPGLGDAIKHVDVTADG 483 (644)
T ss_pred ccccccceeeecCCc----eEEEeecCCcEEeehh-hhhhhhh-------------------cccccCCceeeEEeeccC
Confidence 345677777776 8999999999999996 4432222 234567789999999999
Q ss_pred CEEEEeeCCceEEEEcC
Q 000251 432 TVFVTGSSDTLARVWNA 448 (1784)
Q Consensus 432 ~~LasGs~DG~IrVWDl 448 (1784)
++|++.+ +.++.+.++
T Consensus 484 Kwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 484 KWILATC-KTYLLLIDT 499 (644)
T ss_pred cEEEEec-ccEEEEEEE
Confidence 9988766 566777666
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.36 Score=49.38 Aligned_cols=104 Identities=18% Similarity=0.245 Sum_probs=71.5
Q ss_pred EEEEEECC---CC-CEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeE
Q 000251 273 VYCAIFDR---SG-RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 348 (1784)
Q Consensus 273 Vt~VaFSP---DG-~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~ 348 (1784)
|+++++.. || ..|++||.|..|+||+-+ ..+..+.. .+.|++++-... ..++.+..+|+|-+|+- ...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 56666554 43 589999999999999854 56666663 467888877765 57889999999999984 33333
Q ss_pred EecCCCCceEEEEec-CCCCccEEEEEEeCCCcEEE
Q 000251 349 VLRGHTAAVTAIAFS-PRPGSVYQLLSSSDDGTCRI 383 (1784)
Q Consensus 349 ~L~gH~~~VtsLafS-Pdg~~~~~LaSgs~DGtIrI 383 (1784)
..+.. ..++++++. .++.....|++|-.+|.|-+
T Consensus 76 RiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 44433 335565554 44444457999999998743
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.31 Score=61.18 Aligned_cols=251 Identities=12% Similarity=0.080 Sum_probs=122.6
Q ss_pred ceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEE
Q 000251 356 AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV 435 (1784)
Q Consensus 356 ~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~La 435 (1784)
.|+.+.|+++.. -|++|...|.|.||.+...+.-..... ..-..+.+.+ +
T Consensus 3 ~v~~vs~a~~t~---Elav~~~~GeVv~~k~~~n~~~~~~~~----------------------~~~~~~~~~~----~- 52 (395)
T PF08596_consen 3 SVTHVSFAPETL---ELAVGLESGEVVLFKFGKNQNYGNREQ----------------------PPDLDYNFRR----F- 52 (395)
T ss_dssp -EEEEEEETTTT---EEEEEETTS-EEEEEEEE----------------------------------------S------
T ss_pred eEEEEEecCCCc---eEEEEccCCcEEEEEcccCCCCCccCC----------------------CcccCccccc----c-
Confidence 588999999876 899999999999998876542210000 0000001110 0
Q ss_pred EeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEe
Q 000251 436 TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS 515 (1784)
Q Consensus 436 sGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS 515 (1784)
...++.-.+-|+.............+...+....+.|++++.+.-| .++.|.
T Consensus 53 -~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iG---------------------------Fvaigy 104 (395)
T PF08596_consen 53 -SLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIG---------------------------FVAIGY 104 (395)
T ss_dssp --GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTS---------------------------EEEEEE
T ss_pred -cccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCCCc---------------------------EEEEEe
Confidence 0001111122222111000001123445556668999999998665 899999
Q ss_pred CCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEc-----CCC---CEEEEEec
Q 000251 516 RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS-----LDN---RFVLAAIM 587 (1784)
Q Consensus 516 ~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS-----PDG---~~LaSgs~ 587 (1784)
.+|.+.|.|++....+... ...- ..........|+++.|+ -|+ -.+++|+.
T Consensus 105 ~~G~l~viD~RGPavI~~~-----~i~~----------------~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn 163 (395)
T PF08596_consen 105 ESGSLVVIDLRGPAVIYNE-----NIRE----------------SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN 163 (395)
T ss_dssp TTSEEEEEETTTTEEEEEE-----EGGG------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred cCCcEEEEECCCCeEEeec-----cccc----------------cccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence 9999999999864322110 0000 00011123457777775 233 46888999
Q ss_pred CCeEEEEECCC---Cce----EEEEecCCCCeEEEE-EecCC--------------------CcEEEEEeCCCcEEEEeC
Q 000251 588 DCRICVWNAAD---GSL----VHSLTGHTESTYVLD-VHPFN--------------------PRIAMSAGYDGKTIVWDI 639 (1784)
Q Consensus 588 DGsI~VWDl~t---gkl----v~~L~gH~~~VtsLa-fSPdd--------------------~~lLaSgs~DG~IrIWDl 639 (1784)
.|.+.+|.+.- +.. ......+.+.|..|. +..+. ..+++.+ .+..|+|+..
T Consensus 164 ~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~~~ 242 (395)
T PF08596_consen 164 SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRVFKP 242 (395)
T ss_dssp TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE-T
T ss_pred CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEEEeC
Confidence 99999998741 221 222224556666655 32111 1244333 4677999999
Q ss_pred CCCceEEEEeccCcceEEEEE-----cCCCCEEEEEeCCCeEEEEECCCCcc
Q 000251 640 WEGIPIRIYEISRFRLVDGKF-----SPDGASIILSDDVGQLYILNTGQGES 686 (1784)
Q Consensus 640 ~tG~~l~tl~~~~~~Itslaf-----SPDGk~LAsgs~DG~I~IWdl~sGe~ 686 (1784)
.+.+..+...........+.+ ...+..|++-..+|.|+++.+..=+.
T Consensus 243 ~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 243 PKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp T---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred CCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 988877766522223334455 23677888889999999999865333
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.73 E-value=2.3 Score=54.25 Aligned_cols=127 Identities=15% Similarity=0.101 Sum_probs=69.2
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCC
Q 000251 310 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 389 (1784)
Q Consensus 310 gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg 389 (1784)
........|.++|+|++++++ .||...|+.....+... .+.-...+|.+.+ .+|+-...++|.++.--..
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n----~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN----RYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS----EEEEE-TTS-EEEEETTEE
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc----cEEEEECCCeEEEEEcCcc
Confidence 344557899999999999885 57788888743333322 2344567898854 5777777889999632222
Q ss_pred cccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCC
Q 000251 390 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 469 (1784)
Q Consensus 390 ~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH 469 (1784)
.....+.. ...+..|-. |.+|++.+.+ .|.+||+.+ ...+..+...
T Consensus 100 ~~~k~i~~---------------------~~~~~~If~---G~LL~~~~~~-~i~~yDw~~---------~~~i~~i~v~ 145 (443)
T PF04053_consen 100 EVVKSIKL---------------------PFSVEKIFG---GNLLGVKSSD-FICFYDWET---------GKLIRRIDVS 145 (443)
T ss_dssp -TT--------------------------SS-EEEEE----SSSEEEEETT-EEEEE-TTT-----------EEEEESS-
T ss_pred ccceEEcC---------------------CcccceEEc---CcEEEEECCC-CEEEEEhhH---------cceeeEEecC
Confidence 22222211 112333332 8888777655 799999965 3445555433
Q ss_pred CCCceEEEEccCc
Q 000251 470 ENDVNYVQFSGCA 482 (1784)
Q Consensus 470 ~~~V~sLafSpdg 482 (1784)
.|..|.|++++
T Consensus 146 --~vk~V~Ws~~g 156 (443)
T PF04053_consen 146 --AVKYVIWSDDG 156 (443)
T ss_dssp --E-EEEEE-TTS
T ss_pred --CCcEEEEECCC
Confidence 48999999886
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=95.63 E-value=1.6 Score=58.86 Aligned_cols=132 Identities=15% Similarity=0.167 Sum_probs=87.5
Q ss_pred CCEEEEE-eCCCEEEEEECCCCCeeEEecCCCCc-eEEEEecCCCCc----cEEEEEEeCCCcEEEEecCCCcccceeec
Q 000251 324 NALVASA-SNDCIIRVWRLPDGLPISVLRGHTAA-VTAIAFSPRPGS----VYQLLSSSDDGTCRIWDARYSQFSPRIYI 397 (1784)
Q Consensus 324 g~lLASG-S~DGtIrVWDl~tgk~i~~L~gH~~~-VtsLafSPdg~~----~~~LaSgs~DGtIrIWDl~tg~~l~~i~l 397 (1784)
.++|+.. .....|+-.|++.|+.+..+..|... |. .|.|+.+. ....+.|-.+..|..||.+-.. ..+..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~--~k~v~ 568 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG--NKLVD 568 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCccee--EecccccccccCCCceEEEECCCceEEeccCCCC--Cceee
Confidence 3444443 34578999999999999999877643 44 44454210 0145677788889999998543 11100
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEE
Q 000251 398 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 477 (1784)
Q Consensus 398 ~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLa 477 (1784)
. ............|++-+.+| +||+|+.+|.||+||-- + ......+.+-..+|.+|.
T Consensus 569 -~------------~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g--------~~AKT~lp~lG~pI~~iD 625 (794)
T PF08553_consen 569 -S------------QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-G--------KRAKTALPGLGDPIIGID 625 (794)
T ss_pred -c------------cccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-c--------hhhhhcCCCCCCCeeEEE
Confidence 0 00011244557888888777 69999999999999942 1 223445667789999999
Q ss_pred EccCc
Q 000251 478 FSGCA 482 (1784)
Q Consensus 478 fSpdg 482 (1784)
.+.+|
T Consensus 626 vt~DG 630 (794)
T PF08553_consen 626 VTADG 630 (794)
T ss_pred ecCCC
Confidence 99987
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.35 Score=63.80 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=86.8
Q ss_pred CCEEEEEECCCCCEEEEEc------CCc--EEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---------
Q 000251 271 NAVYCAIFDRSGRYVITGS------DDR--LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND--------- 333 (1784)
Q Consensus 271 ~~Vt~VaFSPDG~~LATGS------~DG--tIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~D--------- 333 (1784)
..+...++||+|+.+|... .|+ .|.+++.. +.......+. ..+.-.|+|||..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678999999999887665 243 45555642 3332222332 48889999999888777532
Q ss_pred ---CEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEE---EecCCCcccceeecCCCCCcccCC
Q 000251 334 ---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI---WDARYSQFSPRIYIPRPSDAVAGR 407 (1784)
Q Consensus 334 ---GtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrI---WDl~tg~~l~~i~l~~~~~~~~g~ 407 (1784)
+.|.+.++..+.... ...+.|..+.|||||. .|+... +|.|.+ -....|. ..+..
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~---RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~---------- 487 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGV---RAAMII-GGKVYLAVVEQTEDGQ--YALTN---------- 487 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCC---EEEEEE-CCEEEEEEEEeCCCCc--eeecc----------
Confidence 233333443333322 2356799999999998 444433 466766 3333332 11100
Q ss_pred CCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcC
Q 000251 408 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 448 (1784)
Q Consensus 408 ~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl 448 (1784)
+..........+..+.|..++.++ ++..++...+|.+
T Consensus 488 ---~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 488 ---PREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred ---cEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 000011122335778999998854 5555555556655
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.53 E-value=2.4 Score=52.18 Aligned_cols=73 Identities=18% Similarity=0.100 Sum_probs=43.9
Q ss_pred EEecCCCCeEEEEEecC------CCcEEEEEeCCCcEEEEeCCCCceEEE---Ee-ccCcceEEEEEcCCCCEEEEEeCC
Q 000251 604 SLTGHTESTYVLDVHPF------NPRIAMSAGYDGKTIVWDIWEGIPIRI---YE-ISRFRLVDGKFSPDGASIILSDDV 673 (1784)
Q Consensus 604 ~L~gH~~~VtsLafSPd------d~~lLaSgs~DG~IrIWDl~tG~~l~t---l~-~~~~~ItslafSPDGk~LAsgs~D 673 (1784)
.+..| ..+..+.|-.. .+.++++.-..+.|....+.++..+.. +. .....+.++++.|||.++++.+.+
T Consensus 248 ~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~ 326 (331)
T PF07995_consen 248 AYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSD 326 (331)
T ss_dssp EETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TT
T ss_pred eecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCC
Confidence 34444 45677777642 234665555566777777765533322 22 223379999999999999998888
Q ss_pred CeEE
Q 000251 674 GQLY 677 (1784)
Q Consensus 674 G~I~ 677 (1784)
|.|+
T Consensus 327 G~iy 330 (331)
T PF07995_consen 327 GKIY 330 (331)
T ss_dssp TTEE
T ss_pred CeEe
Confidence 8875
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.46 E-value=3.6 Score=50.07 Aligned_cols=230 Identities=12% Similarity=0.062 Sum_probs=126.1
Q ss_pred EEcCCCC-EEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeec
Q 000251 319 AVSSNNA-LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 397 (1784)
Q Consensus 319 afSpDg~-lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l 397 (1784)
.|.++.. ++.+--..+.|.-|+..+|+.. .+. +.+.+.++.....+. .|+++. .| +.+++..++.....+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g---~Lv~~~-~g-~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGG---RLIACE-HG-VRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCC---eEEEEc-cc-cEEEeccCCceeEEecc
Confidence 4566666 4445455778888888766432 232 233344444444433 344443 33 66777765554222211
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeC-----------CceEEEEcCCCCCCCCCCCCCcceeee
Q 000251 398 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-----------DTLARVWNACKPNTDDSDQPNHEIDVL 466 (1784)
Q Consensus 398 ~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~-----------DG~IrVWDl~tg~~~~s~~~~~~i~~l 466 (1784)
.. ........+.+.+.|+|.+.++... -|.|+.++.. +..+..+
T Consensus 104 ~~---------------~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~----------g~~~~l~ 158 (307)
T COG3386 104 PE---------------DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD----------GGVVRLL 158 (307)
T ss_pred cc---------------CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC----------CCEEEee
Confidence 00 0112244567778888876654433 1233333321 3344455
Q ss_pred cCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCC
Q 000251 467 SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVP 546 (1784)
Q Consensus 467 ~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~ 546 (1784)
..+-..-+.|+|+|++ ..++++=+..+.|..|++.... ..
T Consensus 159 ~~~~~~~NGla~SpDg-------------------------~tly~aDT~~~~i~r~~~d~~~--g~------------- 198 (307)
T COG3386 159 DDDLTIPNGLAFSPDG-------------------------KTLYVADTPANRIHRYDLDPAT--GP------------- 198 (307)
T ss_pred cCcEEecCceEECCCC-------------------------CEEEEEeCCCCeEEEEecCccc--Cc-------------
Confidence 5555666789999987 1244444555777777665200 00
Q ss_pred CCCCCCCCCCCC-CceeccCCCCCeeEEEEcCCCCEEEEEecCC-eEEEEECCCCceEEEEecCCCCeEEEEEe-cCCCc
Q 000251 547 PPPMPPQPPRGG-PRQRILPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNAADGSLVHSLTGHTESTYVLDVH-PFNPR 623 (1784)
Q Consensus 547 ~~~~~~~~~~~~-~~~~l~~h~~~VtsVafSPDG~~LaSgs~DG-sI~VWDl~tgklv~~L~gH~~~VtsLafS-Pdd~~ 623 (1784)
.... .........+..-.++...+|.+-+++..+| .|.+|+.. |+++..+.-....+++++|- |+...
T Consensus 199 --------~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~ 269 (307)
T COG3386 199 --------IGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNT 269 (307)
T ss_pred --------cCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCE
Confidence 0000 0111112234455677888898886666555 89999988 99999988776778888884 32234
Q ss_pred EEEEEe
Q 000251 624 IAMSAG 629 (1784)
Q Consensus 624 lLaSgs 629 (1784)
+++++.
T Consensus 270 L~iTs~ 275 (307)
T COG3386 270 LYITSA 275 (307)
T ss_pred EEEEec
Confidence 544444
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.96 Score=55.23 Aligned_cols=142 Identities=11% Similarity=0.131 Sum_probs=89.6
Q ss_pred CCEEEEEcC----------CcEEEEEECCCC----eEEEEE--ecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Q 000251 282 GRYVITGSD----------DRLVKIWSMETA----YCLASC--RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 345 (1784)
Q Consensus 282 G~~LATGS~----------DGtIkIWDl~Tg----k~l~tL--~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk 345 (1784)
-.+||.|.. .|.|.++++... ..+..+ ....++|++|+-- ++. |+++. ++.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 467777743 299999999884 122222 2357889999876 444 54444 4789999998777
Q ss_pred -eeEEec-CCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCC-cccceeecCCCCCcccCCCCCCCCCCCCCCCce
Q 000251 346 -PISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS-QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 422 (1784)
Q Consensus 346 -~i~~L~-gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg-~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V 422 (1784)
.+..-. .....|+++....+ +++.|.....|.++.+... ..+..+. .......+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~~-----~I~vgD~~~sv~~~~~~~~~~~l~~va------------------~d~~~~~v 175 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFKN-----YILVGDAMKSVSLLRYDEENNKLILVA------------------RDYQPRWV 175 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEETT-----EEEEEESSSSEEEEEEETTTE-EEEEE------------------EESS-BEE
T ss_pred cchhhheecceEEEEEEecccc-----EEEEEEcccCEEEEEEEccCCEEEEEE------------------ecCCCccE
Confidence 433322 12336677766643 7889988888888755432 1111110 01124558
Q ss_pred EEEEECCCCCEEEEeeCCceEEEEcCC
Q 000251 423 FCCAFNANGTVFVTGSSDTLARVWNAC 449 (1784)
Q Consensus 423 ~sLafSpdG~~LasGs~DG~IrVWDl~ 449 (1784)
+++.|-+++..++++..+|.|.++...
T Consensus 176 ~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 176 TAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 899998777799999999999999885
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.36 E-value=3.2 Score=50.48 Aligned_cols=105 Identities=14% Similarity=0.170 Sum_probs=67.8
Q ss_pred CCCCeeEEEEcCCCCEEEEEec-CCeEEEEECCC--C----ce-EEEEecCCCCeEEEEEecCCCcEEEEEeCCC-cEEE
Q 000251 566 TPRGVNMIVWSLDNRFVLAAIM-DCRICVWNAAD--G----SL-VHSLTGHTESTYVLDVHPFNPRIAMSAGYDG-KTIV 636 (1784)
Q Consensus 566 h~~~VtsVafSPDG~~LaSgs~-DGsI~VWDl~t--g----kl-v~~L~gH~~~VtsLafSPdd~~lLaSgs~DG-~IrI 636 (1784)
+-..-+.|+||||++.|+.+.. .+.|+-|++.. + +. ...+..+.+.--.++... ++.+.+++..+| .|.+
T Consensus 161 ~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~ 239 (307)
T COG3386 161 DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVR 239 (307)
T ss_pred cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEE
Confidence 3455688999999988776654 47788887752 2 11 111222233334455655 445554555554 8999
Q ss_pred EeCCCCceEEEEeccCcceEEEEE-cCCCCEEEEEeC
Q 000251 637 WDIWEGIPIRIYEISRFRLVDGKF-SPDGASIILSDD 672 (1784)
Q Consensus 637 WDl~tG~~l~tl~~~~~~Itslaf-SPDGk~LAsgs~ 672 (1784)
|+.. |+++..+......+++++| .|+.+.|.+++.
T Consensus 240 ~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 240 FNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 9997 9999999877677888888 456666665443
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=15 Score=49.91 Aligned_cols=113 Identities=5% Similarity=-0.013 Sum_probs=69.0
Q ss_pred CCEEEEEECCCCCEEEEEcC-----CcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC------CEEEEE
Q 000251 271 NAVYCAIFDRSGRYVITGSD-----DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND------CIIRVW 339 (1784)
Q Consensus 271 ~~Vt~VaFSPDG~~LATGS~-----DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~D------GtIrVW 339 (1784)
-.+..+.+||||++||.+.+ ...|+|-|+.+|..+...-... -..++|++|++.|+.+..+ ..|..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 34667889999999987633 3479999999887543322121 1569999999877665442 368888
Q ss_pred ECCCC--CeeEEecCCCCceE-EEEecCCCCccEEEEEE--eCCCcEEEEecC
Q 000251 340 RLPDG--LPISVLRGHTAAVT-AIAFSPRPGSVYQLLSS--SDDGTCRIWDAR 387 (1784)
Q Consensus 340 Dl~tg--k~i~~L~gH~~~Vt-sLafSPdg~~~~~LaSg--s~DGtIrIWDl~ 387 (1784)
++.++ +....+........ .+..+.++.. .++.+ ..++.+.+|+..
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~--l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHY--VVIHLASATTSEVLLLDAE 255 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCE--EEEEEECCccccEEEEECc
Confidence 98888 33444443333333 2333436552 23222 234578888853
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.4 Score=53.93 Aligned_cols=174 Identities=14% Similarity=0.190 Sum_probs=105.1
Q ss_pred cEEEEEECCCCeEEEEEecC-CCCeEEEE---EcCC----CCEEEEEeC----------CCEEEEEECCCC----CeeEE
Q 000251 292 RLVKIWSMETAYCLASCRGH-EGDITDLA---VSSN----NALVASASN----------DCIIRVWRLPDG----LPISV 349 (1784)
Q Consensus 292 GtIkIWDl~Tgk~l~tL~gH-~~~VtsLa---fSpD----g~lLASGS~----------DGtIrVWDl~tg----k~i~~ 349 (1784)
+.|+|.|..+...+.++.-. ...|++++ |..+ ..+|++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 46889999888887766532 23344444 3332 457887753 289999999874 22222
Q ss_pred e--cCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCc-ccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEE
Q 000251 350 L--RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ-FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 426 (1784)
Q Consensus 350 L--~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~-~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLa 426 (1784)
+ ....++|++|+-.. + .|+++. .+.|.+|++...+ +...-.. .....+.++.
T Consensus 82 i~~~~~~g~V~ai~~~~--~---~lv~~~-g~~l~v~~l~~~~~l~~~~~~-------------------~~~~~i~sl~ 136 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFN--G---RLVVAV-GNKLYVYDLDNSKTLLKKAFY-------------------DSPFYITSLS 136 (321)
T ss_dssp EEEEEESS-EEEEEEET--T---EEEEEE-TTEEEEEEEETTSSEEEEEEE--------------------BSSSEEEEE
T ss_pred EEEEeecCcceEhhhhC--C---EEEEee-cCEEEEEEccCcccchhhhee-------------------cceEEEEEEe
Confidence 2 23578899998773 2 444443 4789999998877 3333221 0112455655
Q ss_pred ECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeec--CCCCCceEEEEccCcccccccccCCCCCCCCCccccc
Q 000251 427 FNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS--GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNS 504 (1784)
Q Consensus 427 fSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~--gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~ 504 (1784)
.. +++|++|..-..|.++..... ...+..+. .....++++.|.+++
T Consensus 137 ~~--~~~I~vgD~~~sv~~~~~~~~--------~~~l~~va~d~~~~~v~~~~~l~d~---------------------- 184 (321)
T PF03178_consen 137 VF--KNYILVGDAMKSVSLLRYDEE--------NNKLILVARDYQPRWVTAAEFLVDE---------------------- 184 (321)
T ss_dssp EE--TTEEEEEESSSSEEEEEEETT--------TE-EEEEEEESS-BEEEEEEEE-SS----------------------
T ss_pred cc--ccEEEEEEcccCEEEEEEEcc--------CCEEEEEEecCCCccEEEEEEecCC----------------------
Confidence 54 569999998888888855320 11122222 234456677766543
Q ss_pred cccCCeEEEEeCCCcEEEEeCC
Q 000251 505 WFCHDNIVTCSRDGSAIIWIPR 526 (1784)
Q Consensus 505 ~~~~~~LVSgS~DGtIrIWDl~ 526 (1784)
+.++.+..+|.+.++...
T Consensus 185 ----~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 185 ----DTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ----SEEEEEETTSEEEEEEE-
T ss_pred ----cEEEEEcCCCeEEEEEEC
Confidence 488999999999998765
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.4 Score=58.30 Aligned_cols=116 Identities=21% Similarity=0.186 Sum_probs=64.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEe------CCC--EEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCC-CcE
Q 000251 311 HEGDITDLAVSSNNALVASAS------NDC--IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD-GTC 381 (1784)
Q Consensus 311 H~~~VtsLafSpDg~lLASGS------~DG--tIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~D-GtI 381 (1784)
....+.+.+++|+|+.+|... .|. .|.+++. .+.....+.+. ..+.-.|+|++. .|++.... ..+
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~---~lw~v~dg~~~~ 421 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDAD---AVWVVVDGNTVV 421 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCC---ceEEEecCcceE
Confidence 334688999999999887765 243 4555564 33332223332 388899999976 55555433 223
Q ss_pred EEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEE
Q 000251 382 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 445 (1784)
Q Consensus 382 rIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrV 445 (1784)
++.+......+..+.+... .... .....|..+.|||||..|+... +|.|+|
T Consensus 422 ~v~~~~~~gql~~~~vd~g---------e~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 422 RVIRDPATGQLARTPVDAS---------AVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred EEeccCCCceEEEEeccCc---------hhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 3332221111111111000 0000 2245699999999999888765 466766
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.04 Score=72.95 Aligned_cols=105 Identities=22% Similarity=0.357 Sum_probs=78.0
Q ss_pred CCCEEEEEcCCcEEEEEECCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEE
Q 000251 281 SGRYVITGSDDRLVKIWSMETAY-CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTA 359 (1784)
Q Consensus 281 DG~~LATGS~DGtIkIWDl~Tgk-~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~Vts 359 (1784)
.+..+|.|++.|.|-..|+...- +...=..-.++|++++|+.+|.+++.|-.+|.|.+||+.+++.++.+..|..++++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 35578889988999888876431 11111234679999999999999999999999999999999999999888877777
Q ss_pred EEecCCCCccEEEEEEeCCCcEEEEecC
Q 000251 360 IAFSPRPGSVYQLLSSSDDGTCRIWDAR 387 (1784)
Q Consensus 360 LafSPdg~~~~~LaSgs~DGtIrIWDl~ 387 (1784)
+-+.--.+....++++...|. +|.+.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 655432211226888877776 66654
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.65 Score=47.60 Aligned_cols=100 Identities=21% Similarity=0.264 Sum_probs=68.2
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCc
Q 000251 315 ITDLAVSS---NN-ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 390 (1784)
Q Consensus 315 VtsLafSp---Dg-~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~ 390 (1784)
|++|++.. || ..|++|+.|..|+||+- ...+..+. -+..|++++-...+ .|+.+-.+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~~----~F~Y~l~NGTVGvY~~~~R- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGGG----RFAYALANGTVGVYDRSQR- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCCC----EEEEEecCCEEEEEeCcce-
Confidence 66777664 33 48999999999999983 45666665 45678888877764 7999999999999976322
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECC---CC-CEEEEeeCCceEE
Q 000251 391 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA---NG-TVFVTGSSDTLAR 444 (1784)
Q Consensus 391 ~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSp---dG-~~LasGs~DG~Ir 444 (1784)
+.++. ....++++++.. || .-|++|-.+|.|-
T Consensus 74 -lWRiK---------------------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 -LWRIK---------------------SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -eeeec---------------------cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 11111 233366665543 33 3688888888764
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.12 Score=65.47 Aligned_cols=94 Identities=12% Similarity=0.150 Sum_probs=79.4
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeE-EEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 000251 566 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTY-VLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 644 (1784)
Q Consensus 566 h~~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~Vt-sLafSPdd~~lLaSgs~DG~IrIWDl~tG~~ 644 (1784)
-...|.-+.|+|.-..||++..+|.|.+..+. .+.+.++.-|...++ +++|.| ++++||.|-.||+|+|-|+.+|..
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCc
Confidence 44568889999999999999999999999987 888888887777777 999999 689999999999999999999988
Q ss_pred EEEEe-ccCcceEEEEEc
Q 000251 645 IRIYE-ISRFRLVDGKFS 661 (1784)
Q Consensus 645 l~tl~-~~~~~ItslafS 661 (1784)
+..+. .....|.++.|+
T Consensus 97 l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWD 114 (665)
T ss_pred eeccccccccchheeecc
Confidence 77632 234467777776
|
|
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.011 Score=73.63 Aligned_cols=89 Identities=20% Similarity=0.324 Sum_probs=82.6
Q ss_pred cccccccccccccccccCCCccccCCCCCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHH
Q 000251 1687 NRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1766 (1784)
Q Consensus 1687 ~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s~i~~~a~~l~~~ 1766 (1784)
..+...|.+..+.+...+|+|++.|..+|++.|.+.+|.+.||+...++..|.+++++||.-||++...+++.+..+.+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (371)
T COG5076 276 QAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLEDF 355 (371)
T ss_pred ccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccchhhh
Confidence 44677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC
Q 000251 1767 VTRTLSSLK 1775 (1784)
Q Consensus 1767 ~~~~i~~~~ 1775 (1784)
+..+.+-.+
T Consensus 356 ~~~~~~~~~ 364 (371)
T COG5076 356 VIKKTRLIR 364 (371)
T ss_pred Hhhhhhhhh
Confidence 988776544
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=1.5 Score=57.89 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=22.4
Q ss_pred CCCEEEEEecCC--eEEEEECCCCceEEEEecCC
Q 000251 578 DNRFVLAAIMDC--RICVWNAADGSLVHSLTGHT 609 (1784)
Q Consensus 578 DG~~LaSgs~DG--sI~VWDl~tgklv~~L~gH~ 609 (1784)
+|+..++|+.+| .+..||..+.+-......|.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 788889999888 67778877765544444443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.54 E-value=1.9 Score=50.60 Aligned_cols=144 Identities=15% Similarity=0.180 Sum_probs=89.0
Q ss_pred EEEECCCC-CEEEEEcCCcE-EEEEECCCCeEEEEEecCCCC--eEEEEEcCCCCEEEEEeCC-----CEEEEEECCCC-
Q 000251 275 CAIFDRSG-RYVITGSDDRL-VKIWSMETAYCLASCRGHEGD--ITDLAVSSNNALVASASND-----CIIRVWRLPDG- 344 (1784)
Q Consensus 275 ~VaFSPDG-~~LATGS~DGt-IkIWDl~Tgk~l~tL~gH~~~--VtsLafSpDg~lLASGS~D-----GtIrVWDl~tg- 344 (1784)
.++|+|.- +-++.+-.-|+ ..|+|..+++...++....+. --.=.|||||.+|...-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 46788854 44566655554 567888888776665421111 1112599999999877544 88999998755
Q ss_pred CeeEEecCCCCceEEEEecCCCCccEEEEEEeC------------------CCcEEEEecCCCcccceeecCCCCCcccC
Q 000251 345 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD------------------DGTCRIWDARYSQFSPRIYIPRPSDAVAG 406 (1784)
Q Consensus 345 k~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~------------------DGtIrIWDl~tg~~l~~i~l~~~~~~~~g 406 (1784)
+.+..+..|.-.-..+.|.+||. .|+.+.. .-.+.+.|..+|.++.+..++.
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGr---tlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~------- 221 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGR---TLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA------- 221 (366)
T ss_pred ceecccccCCcCcceeEEecCCc---EEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch-------
Confidence 45677788887788899999997 5554432 1123344444444444433221
Q ss_pred CCCCCCCCCCCCCCceEEEEECCCCCEEEEe
Q 000251 407 RNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 437 (1784)
Q Consensus 407 ~~~~~~~s~~~h~~~V~sLafSpdG~~LasG 437 (1784)
..+.-.|..++..+||..++.+
T Consensus 222 ---------~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 222 ---------SLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred ---------hhhhcceeeeeeCCCCcEEEEE
Confidence 1234457788888888755543
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=94.39 E-value=7.7 Score=49.05 Aligned_cols=83 Identities=17% Similarity=0.163 Sum_probs=58.3
Q ss_pred EecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcc-eEEE-EEcCC----------------CCE
Q 000251 605 LTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR-LVDG-KFSPD----------------GAS 666 (1784)
Q Consensus 605 L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~-Itsl-afSPD----------------Gk~ 666 (1784)
|......+.+|+.+| +++++|+...=|.|.|+|+.++..++.+++.... +.-+ ..... ..+
T Consensus 303 l~D~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 303 LPDSKREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eccCCceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 334445688999999 5788888888899999999999999988865442 1111 11111 123
Q ss_pred EE-EEeCCCeEEEEECCCCcccc
Q 000251 667 II-LSDDVGQLYILNTGQGESQK 688 (1784)
Q Consensus 667 LA-sgs~DG~I~IWdl~sGe~~~ 688 (1784)
|+ .+-.-|.|-||.+.+|..+.
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~ 404 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVA 404 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEE
Confidence 33 46778999999999887654
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.37 E-value=8.4 Score=46.79 Aligned_cols=146 Identities=16% Similarity=0.174 Sum_probs=73.1
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEec-
Q 000251 308 CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA- 386 (1784)
Q Consensus 308 L~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl- 386 (1784)
...-.+.+..+..++||++++++.....+.-|+--...-...-+.-...|..|.|.|++. |......|.|++=+.
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~----lw~~~~Gg~~~~s~~~ 215 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN----LWMLARGGQIQFSDDP 215 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-----EEEEETTTEEEEEE-T
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC----EEEEeCCcEEEEccCC
Confidence 345567899999999999999987777777888532222223334568899999999975 444558888888762
Q ss_pred CCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeee
Q 000251 387 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL 466 (1784)
Q Consensus 387 ~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l 466 (1784)
.....-.. +..........+..++|.+++...|+|+.. .+ +.....+ +..+.....
T Consensus 216 ~~~~~w~~----------------~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgG------ktW~~~~~~ 271 (302)
T PF14870_consen 216 DDGETWSE----------------PIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGG------KTWQKDRVG 271 (302)
T ss_dssp TEEEEE-------------------B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTT------SS-EE-GGG
T ss_pred CCcccccc----------------ccCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCC------ccceECccc
Confidence 11111000 001111234458999999998888877654 33 3333222 223333333
Q ss_pred cCCCCCceEEEEccC
Q 000251 467 SGHENDVNYVQFSGC 481 (1784)
Q Consensus 467 ~gH~~~V~sLafSpd 481 (1784)
..-...+..|.|.+.
T Consensus 272 ~~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 272 ENVPSNLYRIVFVNP 286 (302)
T ss_dssp TTSSS---EEEEEET
T ss_pred cCCCCceEEEEEcCC
Confidence 344556777877643
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.34 E-value=6.9 Score=46.12 Aligned_cols=253 Identities=12% Similarity=0.129 Sum_probs=133.8
Q ss_pred eEEEEecCCCCccEEEEEEeCCCcE-EEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEE
Q 000251 357 VTAIAFSPRPGSVYQLLSSSDDGTC-RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV 435 (1784)
Q Consensus 357 VtsLafSPdg~~~~~LaSgs~DGtI-rIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~La 435 (1784)
-..|+|+|... ..++.+-.-|+. .++|..+.+....+..... .+..-.-.|||||.+|.
T Consensus 70 ~Hgi~~~p~~~--ravafARrPGtf~~vfD~~~~~~pv~~~s~~~------------------RHfyGHGvfs~dG~~LY 129 (366)
T COG3490 70 GHGIAFHPALP--RAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG------------------RHFYGHGVFSPDGRLLY 129 (366)
T ss_pred cCCeecCCCCc--ceEEEEecCCceEEEECCCCCcCcEEEecccC------------------ceeecccccCCCCcEEE
Confidence 34577888654 356666666664 5789888876665532111 11122346999999998
Q ss_pred EeeC-----CceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCCCCCCccccccccCCe
Q 000251 436 TGSS-----DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 510 (1784)
Q Consensus 436 sGs~-----DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~~~~~~~~~~~~~~~~ 510 (1784)
+.-. -|.|-|||.+.+ ...+..+..|.-.-..+.+.++| ..
T Consensus 130 ATEndfd~~rGViGvYd~r~~--------fqrvgE~~t~GiGpHev~lm~DG--------------------------rt 175 (366)
T COG3490 130 ATENDFDPNRGVIGVYDAREG--------FQRVGEFSTHGIGPHEVTLMADG--------------------------RT 175 (366)
T ss_pred eecCCCCCCCceEEEEecccc--------cceecccccCCcCcceeEEecCC--------------------------cE
Confidence 7644 378999999632 34556667777777778888876 22
Q ss_pred EEEEeCCCcEEEE-eCCCCCCCcccccccccccccC-CCCCCCCCCCCCCCc--eecc--CCCCCeeEEEEcCCCCEEEE
Q 000251 511 IVTCSRDGSAIIW-IPRSRRSHPKAARWTQAYHLKV-PPPPMPPQPPRGGPR--QRIL--PTPRGVNMIVWSLDNRFVLA 584 (1784)
Q Consensus 511 LVSgS~DGtIrIW-Dl~t~~~~~~~~~w~~~~~l~~-~~~~~~~~~~~~~~~--~~l~--~h~~~VtsVafSPDG~~LaS 584 (1784)
++.+ +|-|..- |..- . .+.+.. .+.........+..+ ..+. .+...|..++..+||+.++.
T Consensus 176 lvva--nGGIethpdfgR-~----------~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfg 242 (366)
T COG3490 176 LVVA--NGGIETHPDFGR-T----------ELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFG 242 (366)
T ss_pred EEEe--CCceecccccCc-c----------ccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEE
Confidence 3222 1112221 1000 0 000000 000000000011111 1111 23456788888888876665
Q ss_pred EecCCe-----EEEEECCCCceEEEEec-------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccC
Q 000251 585 AIMDCR-----ICVWNAADGSLVHSLTG-------HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR 652 (1784)
Q Consensus 585 gs~DGs-----I~VWDl~tgklv~~L~g-------H~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~ 652 (1784)
+-..|- -.|=-...|+.+.-+.- ...-|-+|+.+-.++.+.+|+=..+...|||..+|..+.......
T Consensus 243 cQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d 322 (366)
T COG3490 243 CQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD 322 (366)
T ss_pred EEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc
Confidence 432221 11111223333333321 123466788877566666666666678899999998876543111
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000251 653 FRLVDGKFSPDGASIILSDDVGQLYILN 680 (1784)
Q Consensus 653 ~~ItslafSPDGk~LAsgs~DG~I~IWd 680 (1784)
+.-.-+...-+++++.+|.+.++.
T Consensus 323 ----aaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 323 ----AAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred ----cccceeccCceEEecCCceEEecc
Confidence 122234444566777778887774
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.078 Score=60.07 Aligned_cols=103 Identities=17% Similarity=0.093 Sum_probs=66.3
Q ss_pred CeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceecc-CCCCCeeEEEEcCCCCEEEEEec
Q 000251 509 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL-PTPRGVNMIVWSLDNRFVLAAIM 587 (1784)
Q Consensus 509 ~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~-~h~~~VtsVafSPDG~~LaSgs~ 587 (1784)
..+++|+.+|.|.+|+..... ....... ......+.|.--.++.+..+++.
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g----------------------------~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~ 122 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEG----------------------------AHSDRVCSGEESIDLGIPNGRDSSLGCVGAQ 122 (238)
T ss_pred ceEEeecccceEEEecCCccc----------------------------hHHHhhhcccccceeccccccccceeEEecc
Confidence 589999999999999766210 0000111 11122333444456678889999
Q ss_pred CCeEEEEECCCCceEEEEecCC-CCeEEEEEecCCCcEEEEE--eCCCcEEEEeCC
Q 000251 588 DCRICVWNAADGSLVHSLTGHT-ESTYVLDVHPFNPRIAMSA--GYDGKTIVWDIW 640 (1784)
Q Consensus 588 DGsI~VWDl~tgklv~~L~gH~-~~VtsLafSPdd~~lLaSg--s~DG~IrIWDl~ 640 (1784)
||.|+.|++.-++.+.....|. .++..+..+. ..++++.+ |.|..++.|++.
T Consensus 123 dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 123 DGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred CCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchh
Confidence 9999999999988888777777 4444444444 44555555 666667777664
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.71 E-value=2.8 Score=55.42 Aligned_cols=102 Identities=12% Similarity=0.168 Sum_probs=56.4
Q ss_pred CCEEEEEeCC------CEEEEEECCCCCee--EEecCCCCceEEEEecCCCCccEEEEEEeCC------CcEEEEecCCC
Q 000251 324 NALVASASND------CIIRVWRLPDGLPI--SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD------GTCRIWDARYS 389 (1784)
Q Consensus 324 g~lLASGS~D------GtIrVWDl~tgk~i--~~L~gH~~~VtsLafSPdg~~~~~LaSgs~D------GtIrIWDl~tg 389 (1784)
+.+++.|+.+ ..|..+|..++.-. ..+. ....-.++++..+ ...++||.| .++..||..++
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~~----~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLNG----KLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEECC----EEEEEccccCCCcccceEEEecCCCC
Confidence 4455555555 35778887776332 2222 2233455566654 278888888 34677888877
Q ss_pred cccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCc-----eEEEEcCCC
Q 000251 390 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDT-----LARVWNACK 450 (1784)
Q Consensus 390 ~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG-----~IrVWDl~t 450 (1784)
+....-.+. .......+. .-+|.+.|+||.|| +|..||..+
T Consensus 360 ~W~~~a~M~----------------~~R~~~~v~----~l~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 360 QWTPVAPMN----------------TKRSDFGVA----VLDGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred ceeccCCcc----------------CccccceeE----EECCEEEEEeccccccccccEEEecCCC
Confidence 643311110 001111111 12788999999986 466677754
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.66 E-value=5.1 Score=47.59 Aligned_cols=163 Identities=9% Similarity=0.075 Sum_probs=101.1
Q ss_pred CEEEEEECCCCCEEEEEcCCcEEEEEECCCCeE--EEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCeeEE
Q 000251 272 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC--LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 349 (1784)
Q Consensus 272 ~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~--l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i~~ 349 (1784)
.+.|+-|...+.+...++.. +-+|...=... .+.+.|-...|.++.|+|+.+.|++......-.||=...|..+++
T Consensus 45 ~f~~a~~k~~~~~~~~~~r~--~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirt 122 (316)
T COG3204 45 VFPCAWFKAGQTNGLDLSRY--IARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRT 122 (316)
T ss_pred eeeeEEEeccccccccccch--hhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEE
Confidence 34454454444344444444 44554331111 112345556699999999999999988888888887788998887
Q ss_pred ecC-CCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEEC
Q 000251 350 LRG-HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 428 (1784)
Q Consensus 350 L~g-H~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafS 428 (1784)
+.- .-...-+|.+..++. ++++--.++.+.++.+........+... ..+.......+...-.++|.
T Consensus 123 iPL~g~~DpE~Ieyig~n~---fvi~dER~~~l~~~~vd~~t~~~~~~~~----------~i~L~~~~k~N~GfEGlA~d 189 (316)
T COG3204 123 IPLTGFSDPETIEYIGGNQ---FVIVDERDRALYLFTVDADTTVISAKVQ----------KIPLGTTNKKNKGFEGLAWD 189 (316)
T ss_pred ecccccCChhHeEEecCCE---EEEEehhcceEEEEEEcCCccEEeccce----------EEeccccCCCCcCceeeecC
Confidence 642 123455677877765 6667777888888877655322221100 00111112225667889999
Q ss_pred CCCCEEEEeeCCceEEEEcCC
Q 000251 429 ANGTVFVTGSSDTLARVWNAC 449 (1784)
Q Consensus 429 pdG~~LasGs~DG~IrVWDl~ 449 (1784)
|....|.++-.-.-+.||.+.
T Consensus 190 ~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 190 PVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred CCCceEEEEEccCCcEEEEEe
Confidence 988888888777777777764
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=93.46 E-value=4 Score=48.23 Aligned_cols=169 Identities=9% Similarity=-0.036 Sum_probs=97.0
Q ss_pred ceEEEEEccC-CCCEEEEEECCCCCEEEEEcCCc--EEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEEeCCCE
Q 000251 260 MQNIKRVRGH-RNAVYCAIFDRSGRYVITGSDDR--LVKIWSMETAYCLASCRGHE-GDITDLAVSSNNALVASASNDCI 335 (1784)
Q Consensus 260 ~k~l~tL~GH-~~~Vt~VaFSPDG~~LATGS~DG--tIkIWDl~Tgk~l~tL~gH~-~~VtsLafSpDg~lLASGS~DGt 335 (1784)
.+.++++... ..-...+.|..+|.++-+.+.-| .|+.+|+.+|+.+....-.. ----.|++. ++++..-.=.++.
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSE
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCe
Confidence 4555555422 33455777878888888777655 89999999999877654221 111233333 3333344446889
Q ss_pred EEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCC
Q 000251 336 IRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 415 (1784)
Q Consensus 336 IrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~ 415 (1784)
..+||..+.+.+..+. ..+.=+.++ .++. .|+.......|.++|..+-+....+.+.....
T Consensus 112 ~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~---~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~------------- 172 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFP-YPGEGWGLT--SDGK---RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGR------------- 172 (264)
T ss_dssp EEEEETTTTEEEEEEE--SSS--EEE--ECSS---CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTE-------------
T ss_pred EEEEccccceEEEEEe-cCCcceEEE--cCCC---EEEEECCccceEEECCcccceEEEEEEEECCE-------------
Confidence 9999999998888876 345667777 3444 56666667789999998877766665422111
Q ss_pred CCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCC
Q 000251 416 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKP 451 (1784)
Q Consensus 416 ~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg 451 (1784)
.-..++-+.|- +|...|=.-....|...|..++
T Consensus 173 --pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG 205 (264)
T PF05096_consen 173 --PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETG 205 (264)
T ss_dssp --E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-
T ss_pred --ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCC
Confidence 11234555554 5555554444455556666554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.40 E-value=4.6 Score=53.45 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=79.0
Q ss_pred CCCCCEEEEEcCC------cEEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEeCC------CEEEEEECCCCC
Q 000251 279 DRSGRYVITGSDD------RLVKIWSMETAYCLASCRG-HEGDITDLAVSSNNALVASASND------CIIRVWRLPDGL 345 (1784)
Q Consensus 279 SPDG~~LATGS~D------GtIkIWDl~Tgk~l~tL~g-H~~~VtsLafSpDg~lLASGS~D------GtIrVWDl~tgk 345 (1784)
+..+.+++.||.+ ..|..+|..++.......- +...-.++++. +|.+.++|+.| .++..||..+++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3445667777766 3788899888755433221 22223344444 56788889888 357778876654
Q ss_pred ee--EEecCCCCceEEEEecCCCCccEEEEEEeCCCc-----EEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCC
Q 000251 346 PI--SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT-----CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 418 (1784)
Q Consensus 346 ~i--~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGt-----IrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h 418 (1784)
-. ..+........ ++.. +|. ..++||.||. |..||..+.+....-.+
T Consensus 361 W~~~a~M~~~R~~~~-v~~l-~g~---iYavGG~dg~~~l~svE~YDp~~~~W~~va~m--------------------- 414 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFG-VAVL-DGK---LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM--------------------- 414 (571)
T ss_pred eeccCCccCccccce-eEEE-CCE---EEEEeccccccccccEEEecCCCCcccccCCC---------------------
Confidence 22 22222212221 2222 222 7788888865 66677776654322111
Q ss_pred CCceEE-EEECCCCCEEEEeeCCc------eEEEEcCCCC
Q 000251 419 SHQIFC-CAFNANGTVFVTGSSDT------LARVWNACKP 451 (1784)
Q Consensus 419 ~~~V~s-LafSpdG~~LasGs~DG------~IrVWDl~tg 451 (1784)
...... .+..-+|.+.++||.++ ++..||..+.
T Consensus 415 ~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 415 LTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred CcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC
Confidence 111111 12223788888888654 4567777653
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=93.30 E-value=3.3 Score=50.23 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=80.7
Q ss_pred ccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEC-CCCC
Q 000251 267 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL-PDGL 345 (1784)
Q Consensus 267 ~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl-~tgk 345 (1784)
.+-.+.+..+..++||++||+++.-....-|+--.......-+.-...|..|.|.|++.+.+.+ ..|.|+.=+. ..+.
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3445789999999999999999887777788865332333333456889999999998766654 7888888772 1221
Q ss_pred ee----EEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCc
Q 000251 346 PI----SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 421 (1784)
Q Consensus 346 ~i----~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~ 421 (1784)
.. ..+....-.+..++|.+++. ..+ ++..|+|. ...+.|+.-.... ....-...
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~---~wa-~gg~G~l~-~S~DgGktW~~~~-----------------~~~~~~~n 277 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNE---IWA-VGGSGTLL-VSTDGGKTWQKDR-----------------VGENVPSN 277 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS----EEE-EESTT-EE-EESSTTSS-EE-G-----------------GGTTSSS-
T ss_pred ccccccCCcccCceeeEEEEecCCCC---EEE-EeCCccEE-EeCCCCccceECc-----------------cccCCCCc
Confidence 11 11112233488999999864 444 55556443 3344443222211 11122345
Q ss_pred eEEEEECCCCCEEEEeeCCceEEEE
Q 000251 422 IFCCAFNANGTVFVTGSSDTLARVW 446 (1784)
Q Consensus 422 V~sLafSpdG~~LasGs~DG~IrVW 446 (1784)
++.+.|..+.+-+|.| .+|.|.-|
T Consensus 278 ~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 278 LYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp --EEEEEETTEEEEE--STTEEEEE
T ss_pred eEEEEEcCCCceEEEC-CCcEEEEe
Confidence 7788887666666655 57766554
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.27 E-value=9.8 Score=43.73 Aligned_cols=46 Identities=7% Similarity=0.038 Sum_probs=40.7
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEe
Q 000251 573 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH 618 (1784)
Q Consensus 573 VafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH~~~VtsLafS 618 (1784)
+++..+|.+.++.-..++|...|..+|+.+.++.-....|++++|-
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 4456688888888889999999999999999999889999999994
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.26 E-value=44 Score=45.57 Aligned_cols=119 Identities=17% Similarity=0.178 Sum_probs=76.0
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEECCCCceEEEE-ecCCCCeEEEEEecC--CCc---EEEEEeCCCcEEEEe-CC
Q 000251 568 RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPF--NPR---IAMSAGYDGKTIVWD-IW 640 (1784)
Q Consensus 568 ~~VtsVafSPDG~~LaSgs~DGsI~VWDl~tgklv~~L-~gH~~~VtsLafSPd--d~~---lLaSgs~DG~IrIWD-l~ 640 (1784)
..++..+.+.+...++.++.++.+...++..+.+.... ..-...|.|+.++|. ++. +++.|.++..+.+-- +.
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 34555556666677888887788888887776632221 123467899999975 333 888888877665443 33
Q ss_pred CCceEEEEecc----CcceEEEEEcCCCCEEEEEeCCCeEEE--EECCCCcc
Q 000251 641 EGIPIRIYEIS----RFRLVDGKFSPDGASIILSDDVGQLYI--LNTGQGES 686 (1784)
Q Consensus 641 tG~~l~tl~~~----~~~ItslafSPDGk~LAsgs~DG~I~I--Wdl~sGe~ 686 (1784)
+...+...... ...|.-..|--|+.+|.++..||.+.- +|..+|..
T Consensus 568 d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 568 DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence 44444333211 124555677778899999999998865 45566644
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.13 E-value=2.8 Score=49.59 Aligned_cols=155 Identities=18% Similarity=0.147 Sum_probs=91.2
Q ss_pred CEEEEEECCCCCEEEEEc---CCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEE-CCCCCee
Q 000251 272 AVYCAIFDRSGRYVITGS---DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR-LPDGLPI 347 (1784)
Q Consensus 272 ~Vt~VaFSPDG~~LATGS---~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWD-l~tgk~i 347 (1784)
.+...+++++|+.+|... ....+.++... .....+. ....++.-.|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887665 33455555543 3222221 223788889999988777766666677774 3344322
Q ss_pred --EEecC-CCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCccc-ceeecCCCCCcccCCCCCCCCCCCCCCCceE
Q 000251 348 --SVLRG-HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS-PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 423 (1784)
Q Consensus 348 --~~L~g-H~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l-~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~ 423 (1784)
..-.. -.+.|+.+.+||||...-+++....++.|.+--+....-- .... ..+..........+.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l------------~~~~~~~~~~~~~v~ 169 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL------------TGPRRVAPPLLSDVT 169 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee------------ccceEecccccCcce
Confidence 21111 1128999999999984323333345577777654322211 1110 011111223356789
Q ss_pred EEEECCCCCEEEEeeCCc
Q 000251 424 CCAFNANGTVFVTGSSDT 441 (1784)
Q Consensus 424 sLafSpdG~~LasGs~DG 441 (1784)
.++|.+++.+++.+...+
T Consensus 170 ~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 170 DVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred eeeecCCCEEEEEeCCCC
Confidence 999999998777766544
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=92.94 E-value=4.1 Score=55.13 Aligned_cols=111 Identities=10% Similarity=-0.012 Sum_probs=72.0
Q ss_pred CeeEEEEcCCCCEEEEEe-----cCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCcEEEEEeCC-----CcEEEEe
Q 000251 569 GVNMIVWSLDNRFVLAAI-----MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD-----GKTIVWD 638 (1784)
Q Consensus 569 ~VtsVafSPDG~~LaSgs-----~DGsI~VWDl~tgklv~~L~gH~~~VtsLafSPdd~~lLaSgs~D-----G~IrIWD 638 (1784)
.+..+.|||||++|+.+. ....|++.|+.+|..+...-... -..++|++++..++++...+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 467789999999988753 33459999999887443221121 15699999666676665433 3688889
Q ss_pred CCCC--ceEEEEeccCcceE-EEEEcCCCCEEEEE---eCCCeEEEEEC
Q 000251 639 IWEG--IPIRIYEISRFRLV-DGKFSPDGASIILS---DDVGQLYILNT 681 (1784)
Q Consensus 639 l~tG--~~l~tl~~~~~~It-slafSPDGk~LAsg---s~DG~I~IWdl 681 (1784)
+.++ +....+........ .+..+.|+++++.. ..++.+.+|+.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 9888 44445553333333 34445589987754 33467889884
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.79 E-value=3.2 Score=52.30 Aligned_cols=132 Identities=14% Similarity=0.175 Sum_probs=88.4
Q ss_pred EEEEEeCCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccE----EEEEEeCCCcEEEEecCCCcccceeecCCCC
Q 000251 326 LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY----QLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 401 (1784)
Q Consensus 326 lLASGS~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~----~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~ 401 (1784)
+|.++.....|+-.|++.|+.+..+.-|.. |.-+.+.|+.+... .-+.|-.|..|+-||.+-.... .+....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~q-- 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVVQ-- 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeeee--
Confidence 344555566788889999999999987766 88888888865321 1245667888999998733211 111100
Q ss_pred CcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccC
Q 000251 402 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 481 (1784)
Q Consensus 402 ~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpd 481 (1784)
...........|++-..+| +||+|+.+|.|++||-. + ......+.+-..+|..|..+.+
T Consensus 424 -----------~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~--------~~AKTAlPgLG~~I~hVdvtad 482 (644)
T KOG2395|consen 424 -----------SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRI-G--------RRAKTALPGLGDAIKHVDVTAD 482 (644)
T ss_pred -----------ccccccccccceeeecCCc-eEEEeecCCcEEeehhh-h--------hhhhhcccccCCceeeEEeecc
Confidence 0011223446677777666 79999999999999972 2 2233456778889999998887
Q ss_pred c
Q 000251 482 A 482 (1784)
Q Consensus 482 g 482 (1784)
|
T Consensus 483 G 483 (644)
T KOG2395|consen 483 G 483 (644)
T ss_pred C
Confidence 6
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=92.72 E-value=20 Score=42.51 Aligned_cols=146 Identities=17% Similarity=0.109 Sum_probs=83.1
Q ss_pred CeEEEEEcCCCCEEEEEe---CCCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEe-cCCC
Q 000251 314 DITDLAVSSNNALVASAS---NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD-ARYS 389 (1784)
Q Consensus 314 ~VtsLafSpDg~lLASGS---~DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWD-l~tg 389 (1784)
.+.+.+++++++.+|... ....+.++.. +.....+. ....++.-.|.+++. ..+....+...+++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~---~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGW---VWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCC---EEEEEcCCCceEEEEecCCC
Confidence 789999999999887765 3345555553 33333321 223788889999964 455555555566663 3333
Q ss_pred cccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEee---CCceEEEEcCCCCCCCCCCCCCcceeee
Q 000251 390 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS---SDTLARVWNACKPNTDDSDQPNHEIDVL 466 (1784)
Q Consensus 390 ~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs---~DG~IrVWDl~tg~~~~s~~~~~~i~~l 466 (1784)
...... +. .......|..+.+||||..+|... .++.|.|--+..............+...
T Consensus 99 ~~~~~~-v~----------------~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~ 161 (253)
T PF10647_consen 99 TGEPVE-VD----------------WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA 161 (253)
T ss_pred cceeEE-ec----------------ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec
Confidence 322111 10 000111799999999999877665 3567777655322111011112223333
Q ss_pred cCCCCCceEEEEccCc
Q 000251 467 SGHENDVNYVQFSGCA 482 (1784)
Q Consensus 467 ~gH~~~V~sLafSpdg 482 (1784)
......+..+.|.+++
T Consensus 162 ~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 162 PPLLSDVTDVAWSDDS 177 (253)
T ss_pred ccccCcceeeeecCCC
Confidence 3445678899998875
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.52 E-value=11 Score=45.05 Aligned_cols=171 Identities=11% Similarity=0.139 Sum_probs=112.7
Q ss_pred EccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCC
Q 000251 266 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG-HEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 344 (1784)
Q Consensus 266 L~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~g-H~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg 344 (1784)
+.|-...|.++.|+|+.+.|++......-.||=...|.++.++.- .-..--.|.+..+|+++++--.++.+.++.+..+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 455566699999999999999998888888888888999998652 1233456788888888888878899998887655
Q ss_pred CeeEE-------e---cCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCC
Q 000251 345 LPISV-------L---RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 414 (1784)
Q Consensus 345 k~i~~-------L---~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s 414 (1784)
..+.. + .......-.++|.|... .|+.+-.-.-+.||.+..+.-....... ..+...
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~---~l~~aKEr~P~~I~~~~~~~~~l~~~~~----------~~~~~~ 227 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH---RLFVAKERNPIGIFEVTQSPSSLSVHAS----------LDPTAD 227 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCc---eEEEEEccCCcEEEEEecCCcccccccc----------cCcccc
Confidence 32211 1 11245678899999876 7888887777888877633211111000 000011
Q ss_pred CCCCCCceEEEEECC-CCCEEEEeeCCceEEEEcCC
Q 000251 415 AGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNAC 449 (1784)
Q Consensus 415 ~~~h~~~V~sLafSp-dG~~LasGs~DG~IrVWDl~ 449 (1784)
..-.-..|.++.|++ .+.+|+-+..++.+.-.|..
T Consensus 228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred cceEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 111223467788886 45666767777777777763
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.29 E-value=1.7 Score=57.38 Aligned_cols=62 Identities=11% Similarity=0.156 Sum_probs=36.7
Q ss_pred CCCEEEEEcCC------cEEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCCC-----EEEEEECCCC
Q 000251 281 SGRYVITGSDD------RLVKIWSMETAYCLAS--CRGHEGDITDLAVSSNNALVASASNDC-----IIRVWRLPDG 344 (1784)
Q Consensus 281 DG~~LATGS~D------GtIkIWDl~Tgk~l~t--L~gH~~~VtsLafSpDg~lLASGS~DG-----tIrVWDl~tg 344 (1784)
++...+.||.+ ..|..||..+...... +......... ..-+|++.+.||.++ +|..||..+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~--~~~~g~IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSL--AVIDDTIYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeE--EEECCEEEEECCcCCCCCCceEEEEECCCC
Confidence 56777788753 3577889887754322 1111111222 223677888888753 4888998765
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.35 Score=64.56 Aligned_cols=102 Identities=9% Similarity=0.114 Sum_probs=75.6
Q ss_pred CCCCEEEEEecCCeEEEEECCCC-ceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccCcce
Q 000251 577 LDNRFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRL 655 (1784)
Q Consensus 577 PDG~~LaSgs~DGsI~VWDl~tg-klv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~~~I 655 (1784)
-.+.+++.|+..|.|...|.... .+.+.=..-.++|++++|+. ++++++.|-.+|.|.+||+..+..++.+..+..+.
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence 35567888888888888887542 11122223457899999988 78888889999999999999999999988666554
Q ss_pred E---EEEEcCCCCEEEEEeCCCeEEEEEC
Q 000251 656 V---DGKFSPDGASIILSDDVGQLYILNT 681 (1784)
Q Consensus 656 t---slafSPDGk~LAsgs~DG~I~IWdl 681 (1784)
+ .+.+..++..+.+++..|. +|.+
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4 4466667777888888776 4544
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.33 Score=55.25 Aligned_cols=105 Identities=10% Similarity=-0.010 Sum_probs=63.8
Q ss_pred CCCEEEEEecCCeEEEEECCC-CceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeccC-cce
Q 000251 578 DNRFVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR-FRL 655 (1784)
Q Consensus 578 DG~~LaSgs~DGsI~VWDl~t-gklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~tl~~~~-~~I 655 (1784)
-+..+++|+.+|.|++|+..- |.....+..-...|-++...-.++.+..+++.||.|+.|++.-++.+.....|. .++
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 356789999999999999762 222112222223333333322344588899999999999998888877776555 344
Q ss_pred EEEEEcCCCCEEEEE--eCCCeEEEEECC
Q 000251 656 VDGKFSPDGASIILS--DDVGQLYILNTG 682 (1784)
Q Consensus 656 tslafSPDGk~LAsg--s~DG~I~IWdl~ 682 (1784)
..+..+..+..|+++ +.+..+..|++.
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchh
Confidence 444444444455544 445555555544
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=91.76 E-value=15 Score=50.08 Aligned_cols=169 Identities=15% Similarity=0.199 Sum_probs=93.4
Q ss_pred ccCCeEEEEeCCCcEEEEeCCCCCCCcccccccc-cccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE
Q 000251 506 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQ-AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 584 (1784)
Q Consensus 506 ~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~-~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS 584 (1784)
.+...|+.++.|+.+.-.|..+++..-.+..-.. .+...+... ..........++ | .+..|++
T Consensus 258 ~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~----------~~g~~~~ts~P~--V----~~g~VIv 321 (764)
T TIGR03074 258 DCARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTT----------PPGYYYPTSPPL--V----AGTTVVI 321 (764)
T ss_pred ccCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcC----------CCcccccccCCE--E----ECCEEEE
Confidence 3457888999999999999998774422211000 000000000 000000000110 0 1234555
Q ss_pred Eec----------CCeEEEEECCCCceEEEEecC---------CCC--------e-EEEEEecCCCcEEEEE--------
Q 000251 585 AIM----------DCRICVWNAADGSLVHSLTGH---------TES--------T-YVLDVHPFNPRIAMSA-------- 628 (1784)
Q Consensus 585 gs~----------DGsI~VWDl~tgklv~~L~gH---------~~~--------V-tsLafSPdd~~lLaSg-------- 628 (1784)
|+. +|.|+-+|+.+|+++..+..- .+. + ..+++.+..+.+++-.
T Consensus 322 G~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~ 401 (764)
T TIGR03074 322 GGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQW 401 (764)
T ss_pred EecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCcccccc
Confidence 532 688999999999998876421 011 1 1233334222222211
Q ss_pred ---------eCCCcEEEEeCCCCceEEEEeccCcceEE---------EEEcC-CCC---EEEEEeCCCeEEEEECCCCcc
Q 000251 629 ---------GYDGKTIVWDIWEGIPIRIYEISRFRLVD---------GKFSP-DGA---SIILSDDVGQLYILNTGQGES 686 (1784)
Q Consensus 629 ---------s~DG~IrIWDl~tG~~l~tl~~~~~~Its---------lafSP-DGk---~LAsgs~DG~I~IWdl~sGe~ 686 (1784)
...+.|.-.|+.+|+....++..+..+++ +.+.. +|+ .|+.++.+|.++++|..+|+.
T Consensus 402 g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 402 GGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred CCccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 12356777899999999988753332222 22333 664 788899999999999999988
Q ss_pred cccc
Q 000251 687 QKDA 690 (1784)
Q Consensus 687 ~~~~ 690 (1784)
+-..
T Consensus 482 l~~~ 485 (764)
T TIGR03074 482 IVPV 485 (764)
T ss_pred Eeec
Confidence 7543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=91.52 E-value=43 Score=41.35 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=41.1
Q ss_pred CCCeeEEEEcC-------CCCEEEEEecCCeEEEEECCCCceEE---E-EecCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 000251 567 PRGVNMIVWSL-------DNRFVLAAIMDCRICVWNAADGSLVH---S-LTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 635 (1784)
Q Consensus 567 ~~~VtsVafSP-------DG~~LaSgs~DGsI~VWDl~tgklv~---~-L~gH~~~VtsLafSPdd~~lLaSgs~DG~Ir 635 (1784)
...+..+.|-. .|.+|++.-..+.|....+..+..+. . +......+..|++.| ++.++++...+|.|.
T Consensus 252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET-TSEEEEEE-TTTTEE
T ss_pred ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC-CCeEEEEECCCCeEe
Confidence 35566666653 56677777667788888886553322 2 223444789999999 566666666777763
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.27 E-value=9.5 Score=47.09 Aligned_cols=153 Identities=13% Similarity=0.064 Sum_probs=88.2
Q ss_pred CCCEEEEEECCCCCEEEEEcCCcEEEE-EECCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCee
Q 000251 270 RNAVYCAIFDRSGRYVITGSDDRLVKI-WSMETAY-CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 347 (1784)
Q Consensus 270 ~~~Vt~VaFSPDG~~LATGS~DGtIkI-WDl~Tgk-~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~i 347 (1784)
.+.++++++.+++.++++|.. |.+.. ++- .++ ....-..-...++++++.++++.+++| ..|.+++=....|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 457899999999988777654 54432 222 222 222223445678999999999877766 4576654333444332
Q ss_pred EEecC----CCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceE
Q 000251 348 SVLRG----HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 423 (1784)
Q Consensus 348 ~~L~g----H~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~ 423 (1784)
..... ....+.+++|.+++. ++.++.+|.|.. ....++.-.... .........+
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~----~~~~G~~G~v~~-S~d~G~tW~~~~-----------------~~~~~~~~~~ 306 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGE----IWAGGGNGTLLV-SKDGGKTWEKDP-----------------VGEEVPSNFY 306 (334)
T ss_pred ccccCCccccccceeeEEEcCCCC----EEEEcCCCeEEE-eCCCCCCCeECC-----------------cCCCCCcceE
Confidence 22211 124578899998764 566667776543 334333211110 0001123577
Q ss_pred EEEECCCCCEEEEeeCCceEEEEcC
Q 000251 424 CCAFNANGTVFVTGSSDTLARVWNA 448 (1784)
Q Consensus 424 sLafSpdG~~LasGs~DG~IrVWDl 448 (1784)
.+.|..++..+++| ..|.|..|+-
T Consensus 307 ~~~~~~~~~~~~~G-~~G~il~~~~ 330 (334)
T PRK13684 307 KIVFLDPEKGFVLG-QRGVLLRYVG 330 (334)
T ss_pred EEEEeCCCceEEEC-CCceEEEecC
Confidence 88887777766655 5787777754
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=91.20 E-value=31 Score=46.93 Aligned_cols=78 Identities=19% Similarity=0.357 Sum_probs=55.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEECC----------CCCe---eEEe--------cCCCCceEEEEecCCCCccEE
Q 000251 313 GDITDLAVSSNNALVASASNDCIIRVWRLP----------DGLP---ISVL--------RGHTAAVTAIAFSPRPGSVYQ 371 (1784)
Q Consensus 313 ~~VtsLafSpDg~lLASGS~DGtIrVWDl~----------tgk~---i~~L--------~gH~~~VtsLafSPdg~~~~~ 371 (1784)
-.|..|.++++|++||..|..|.+ |-.+. .|+. .+++ ..+...|..+.|+|.+.....
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 468899999999999998887644 43332 1221 1111 234567999999998633348
Q ss_pred EEEEeCCCcEEEEecCCCcc
Q 000251 372 LLSSSDDGTCRIWDARYSQF 391 (1784)
Q Consensus 372 LaSgs~DGtIrIWDl~tg~~ 391 (1784)
|++-..|++|++||+.....
T Consensus 164 l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred EEEEecCCEEEEEecCCCCC
Confidence 89999999999999976543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.28 Score=51.45 Aligned_cols=60 Identities=18% Similarity=0.366 Sum_probs=43.5
Q ss_pred CCCHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHhc
Q 000251 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1773 (1784)
Q Consensus 1714 Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s~i~~~a~~l~~~~~~~i~~ 1773 (1784)
|.||.-++++|++++|+++.+|.+||-.|+.=+..=-+-..++-+.-..+.-+|.+.|.+
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~ 118 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMES 118 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHH
Confidence 899999999999999999999999999998755433222223333334455567777655
|
ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.97 E-value=3.2 Score=56.21 Aligned_cols=146 Identities=8% Similarity=-0.037 Sum_probs=86.8
Q ss_pred CCceEEEEECCCCCEEEEeeC--CceEEEEcCCCCCCCCCC--CCCcceeeecCCCCCceEEEEccCcccccccccCCCC
Q 000251 419 SHQIFCCAFNANGTVFVTGSS--DTLARVWNACKPNTDDSD--QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 494 (1784)
Q Consensus 419 ~~~V~sLafSpdG~~LasGs~--DG~IrVWDl~tg~~~~s~--~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~ 494 (1784)
...+..+...+|+...++... +-.|.+||+++-...... .+.............+.++.|+|.-
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v------------ 167 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV------------ 167 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc------------
Confidence 344666677778776555443 348899999753221111 0111111112223345566676653
Q ss_pred CCCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEE
Q 000251 495 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 574 (1784)
Q Consensus 495 ~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 574 (1784)
....+.+..|+.|++..+.... ...........+++++
T Consensus 168 -------------p~n~av~l~dlsl~V~~~~~~~-----------------------------~~v~s~p~t~~~Tav~ 205 (1405)
T KOG3630|consen 168 -------------PLNSAVDLSDLSLRVKSTKQLA-----------------------------QNVTSFPVTNSQTAVL 205 (1405)
T ss_pred -------------cchhhhhccccchhhhhhhhhh-----------------------------hhhcccCcccceeeEE
Confidence 2466778888888887554211 0011123345689999
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCceEEEEecC----CCCeEEEEEec
Q 000251 575 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH----TESTYVLDVHP 619 (1784)
Q Consensus 575 fSPDG~~LaSgs~DGsI~VWDl~tgklv~~L~gH----~~~VtsLafSP 619 (1784)
|+|.|+.++.|-..|++.-|.. +++....+.+. ...|.+|.|-.
T Consensus 206 WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 206 WSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred eccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEec
Confidence 9999999999999999988875 34444444321 35789999976
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.87 E-value=4 Score=55.40 Aligned_cols=114 Identities=11% Similarity=-0.006 Sum_probs=75.6
Q ss_pred CCeeEEEEcCCCCEEEEE--ecCCeEEEEECCCCceE-----EEEec------CCCCeEEEEEecCCCcEEEEEeCCCcE
Q 000251 568 RGVNMIVWSLDNRFVLAA--IMDCRICVWNAADGSLV-----HSLTG------HTESTYVLDVHPFNPRIAMSAGYDGKT 634 (1784)
Q Consensus 568 ~~VtsVafSPDG~~LaSg--s~DGsI~VWDl~tgklv-----~~L~g------H~~~VtsLafSPdd~~lLaSgs~DG~I 634 (1784)
-.|..++..+|+...++. +.+-.|.+||+.+...- .-|.. ......++.|.|.-....+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 446666677787766553 34447999998763221 11111 223456788888655666677889999
Q ss_pred EEEeCCCCc-eEEEEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 000251 635 IVWDIWEGI-PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 682 (1784)
Q Consensus 635 rIWDl~tG~-~l~tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~ 682 (1784)
++..+..-. .+..+. -....++++|+|-|+.|++|...|++.-|...
T Consensus 181 ~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 988774322 222222 33467899999999999999999999888753
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.77 Score=39.91 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=30.1
Q ss_pred CCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeE
Q 000251 270 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC 304 (1784)
Q Consensus 270 ~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~ 304 (1784)
...|.+++|+|...+||.|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356999999999999999999999999998 5554
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=89.50 E-value=47 Score=45.18 Aligned_cols=88 Identities=9% Similarity=0.133 Sum_probs=55.0
Q ss_pred CCCceEEEEECCCCCEEEEeeCCceEEEEcCCC-CCCCCCCCCCcc-e--ee--------ecCCCCCceEEEEccCcccc
Q 000251 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACK-PNTDDSDQPNHE-I--DV--------LSGHENDVNYVQFSGCAVAS 485 (1784)
Q Consensus 418 h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~t-g~~~~s~~~~~~-i--~~--------l~gH~~~V~sLafSpdglas 485 (1784)
....|..|.++++|.+||..|..| |.|..+-. .........+.. + .. ...+...|..+.|+|.+.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~-- 159 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE-- 159 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC--
Confidence 445799999999999999988876 44444421 100000000000 1 00 123455778888888752
Q ss_pred cccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCC
Q 000251 486 RFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 529 (1784)
Q Consensus 486 ~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~ 529 (1784)
.+..|+.-..|+++++||+....
T Consensus 160 ---------------------~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 160 ---------------------SDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred ---------------------CCCeEEEEecCCEEEEEecCCCC
Confidence 24689999999999999997544
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=89.40 E-value=73 Score=40.61 Aligned_cols=145 Identities=17% Similarity=0.202 Sum_probs=88.5
Q ss_pred CCCEEEEEcCCcEEEEEECCCCe-----EEEEEecCCCCeEEEEEcC-----CCCEEEEEeCCCEEEEEECC--CCC---
Q 000251 281 SGRYVITGSDDRLVKIWSMETAY-----CLASCRGHEGDITDLAVSS-----NNALVASASNDCIIRVWRLP--DGL--- 345 (1784)
Q Consensus 281 DG~~LATGS~DGtIkIWDl~Tgk-----~l~tL~gH~~~VtsLafSp-----Dg~lLASGS~DGtIrVWDl~--tgk--- 345 (1784)
....|++||..|.++||+...+. ++.+. .-..+|..|+.-. +...||+- .-..+.||.+. .|.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCCCccc
Confidence 34689999999999999985432 22222 2356888887542 23355553 45678888762 121
Q ss_pred ----eeEEecCCC--CceEEEEecCCCCc--cEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCC
Q 000251 346 ----PISVLRGHT--AAVTAIAFSPRPGS--VYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 417 (1784)
Q Consensus 346 ----~i~~L~gH~--~~VtsLafSPdg~~--~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~ 417 (1784)
.+..+..|. .....+++-|-|+. ..+|.+-+.||.+.+|+-+.-.+...+ +.
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~l--p~------------------ 173 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFL--PD------------------ 173 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEc--CC------------------
Confidence 122222232 23444555454432 258888999999999987654322221 11
Q ss_pred CCCceEEEEECCCCCEEEEeeCCceEEEEcC
Q 000251 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWNA 448 (1784)
Q Consensus 418 h~~~V~sLafSpdG~~LasGs~DG~IrVWDl 448 (1784)
---.-.++|.+....|++++.+..|.-|..
T Consensus 174 -~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 174 -FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred -CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 111235778888888999998888888876
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=89.35 E-value=6.6 Score=51.87 Aligned_cols=118 Identities=11% Similarity=0.112 Sum_probs=80.3
Q ss_pred EEEccCCCCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEe-cCCCCeEEEEEc--CCCCEEEEEeCCCEEEEEE
Q 000251 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVS--SNNALVASASNDCIIRVWR 340 (1784)
Q Consensus 264 ~tL~GH~~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~-gH~~~VtsLafS--pDg~lLASGS~DGtIrVWD 340 (1784)
.++...-.....+.-|.-++..++-+....+.|||...+.+...-. ...+.|.++.|. |+|+.+++.|..+.|.++.
T Consensus 23 ~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 23 STFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3444444455555566666665565566789999999888655433 457889999996 6889888888999999985
Q ss_pred CC---------CCCeeEEe--cCCC-CceEEEEecCCCCccEEEEEEeCCCcEEEEec
Q 000251 341 LP---------DGLPISVL--RGHT-AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386 (1784)
Q Consensus 341 l~---------tgk~i~~L--~gH~-~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl 386 (1784)
-. +..+++.+ ..|+ .+|.+..|.++| .|++|+. ..+.|+|-
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G----~LvV~sG-Nqlfv~dk 155 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG----TLVVGSG-NQLFVFDK 155 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC----eEEEEeC-CEEEEECC
Confidence 31 12233333 3454 689999999998 4555553 45777764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=89.18 E-value=1 Score=39.15 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCCe
Q 000251 312 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP 346 (1784)
Q Consensus 312 ~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk~ 346 (1784)
...|.+++|+|...+||.|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 5554
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=89.07 E-value=8.4 Score=49.48 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=71.1
Q ss_pred CCCCCeeEEEEcCCC----CEEEEEecCCeEEEEECC-----CCceEEEEecCCC---C--eEEEEEecCCCcEEEEEeC
Q 000251 565 PTPRGVNMIVWSLDN----RFVLAAIMDCRICVWNAA-----DGSLVHSLTGHTE---S--TYVLDVHPFNPRIAMSAGY 630 (1784)
Q Consensus 565 ~h~~~VtsVafSPDG----~~LaSgs~DGsI~VWDl~-----tgklv~~L~gH~~---~--VtsLafSPdd~~lLaSgs~ 630 (1784)
+.-..|..++|+|-+ ..|++.-....|.||-+. .++.+..-..+-. + -..+.||| ..-+|+.-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec
Confidence 344568889999853 244555556789999875 2333332221111 1 13578999 4444444333
Q ss_pred CCcEEEEeCCC-CceEEEEeccCcceEEEEEcCCCCEEEEE-eCCCeEEEEECCC
Q 000251 631 DGKTIVWDIWE-GIPIRIYEISRFRLVDGKFSPDGASIILS-DDVGQLYILNTGQ 683 (1784)
Q Consensus 631 DG~IrIWDl~t-G~~l~tl~~~~~~ItslafSPDGk~LAsg-s~DG~I~IWdl~s 683 (1784)
...-.++++.. +..++.-....+.|.|.+|.+||+.|+++ +..-.-+|||-.+
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 33334555543 23333333467789999999999999876 5556889999644
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=88.53 E-value=24 Score=44.68 Aligned_cols=151 Identities=13% Similarity=0.143 Sum_probs=87.8
Q ss_pred CCEEEEEECCCCCEEEEEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECCCCC-----
Q 000251 271 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL----- 345 (1784)
Q Consensus 271 ~~Vt~VaFSPDG~~LATGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~tgk----- 345 (1784)
+....+..+++|.+++.|..-..++-||--.-.....-......++.+.|.+++.+++++ ..|.| +|....|.
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~ 316 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF 316 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence 335667788999888888654444445532211122222345678999999999888766 45554 44444554
Q ss_pred eeEEecC--CCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceE
Q 000251 346 PISVLRG--HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 423 (1784)
Q Consensus 346 ~i~~L~g--H~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~ 423 (1784)
....+.. ....++++.|.+++ .++.++..|.|.... ..|+.-... .....-...++
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~----~~~a~G~~G~v~~s~-D~G~tW~~~-----------------~~~~~~~~~ly 374 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKK----EAWAAGGSGILLRST-DGGKSWKRD-----------------KGADNIAANLY 374 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCC----cEEEEECCCcEEEeC-CCCcceeEc-----------------cccCCCCccee
Confidence 2222221 22358999999887 477777888776653 333211111 00011234577
Q ss_pred EEEECCCCCEEEEeeCCceEEEE
Q 000251 424 CCAFNANGTVFVTGSSDTLARVW 446 (1784)
Q Consensus 424 sLafSpdG~~LasGs~DG~IrVW 446 (1784)
.+.|.++++.+++| .+|.|.-|
T Consensus 375 ~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 375 SVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred EEEEcCCCceEEEe-CCcEEEEe
Confidence 89998877766665 56766544
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=88.36 E-value=67 Score=38.86 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=53.0
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCceEEEEe--cCCCCeEEEEEec-----CCCcEEEEEeCCCcEEEEeCCCCceEEEE
Q 000251 576 SLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GHTESTYVLDVHP-----FNPRIAMSAGYDGKTIVWDIWEGIPIRIY 648 (1784)
Q Consensus 576 SPDG~~LaSgs~DGsI~VWDl~tgklv~~L~--gH~~~VtsLafSP-----dd~~lLaSgs~DG~IrIWDl~tG~~l~tl 648 (1784)
.++...=+.|..-|.|-+||+ .|.+++.+. +.-..-+.|+..| ..+.+|+---.||+|..+|..+|+.+..+
T Consensus 209 d~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 209 DADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred CCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeee
Confidence 444444445556688999997 688888874 2233445666655 24577776667999999999999988887
Q ss_pred eccC
Q 000251 649 EISR 652 (1784)
Q Consensus 649 ~~~~ 652 (1784)
....
T Consensus 288 ~~~~ 291 (336)
T TIGR03118 288 LDPD 291 (336)
T ss_pred cCCC
Confidence 7433
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.24 E-value=9 Score=50.27 Aligned_cols=105 Identities=8% Similarity=-0.064 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCCc------EEEEEECCCCeEEEEE--ecCCCCeEEEEEcCCCCEEEEEeCC-----CEEEEEECCCCCe
Q 000251 280 RSGRYVITGSDDR------LVKIWSMETAYCLASC--RGHEGDITDLAVSSNNALVASASND-----CIIRVWRLPDGLP 346 (1784)
Q Consensus 280 PDG~~LATGS~DG------tIkIWDl~Tgk~l~tL--~gH~~~VtsLafSpDg~lLASGS~D-----GtIrVWDl~tgk~ 346 (1784)
.++..++.||.++ .+..||..+.+....- .........++ -++.+.+.||.+ ..+..||..+++-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3556777776542 5778898887664321 11112222222 367777888765 3577788766542
Q ss_pred eE--EecCCCCceEEEEecCCCCccEEEEEEeCC------CcEEEEecCCCcc
Q 000251 347 IS--VLRGHTAAVTAIAFSPRPGSVYQLLSSSDD------GTCRIWDARYSQF 391 (1784)
Q Consensus 347 i~--~L~gH~~~VtsLafSPdg~~~~~LaSgs~D------GtIrIWDl~tg~~ 391 (1784)
.. .+..... -.+++.. ++. .++.||.+ ..+..||+.+...
T Consensus 371 ~~~~~lp~~r~-~~~~~~~-~~~---iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 371 REEPPLIFPRY-NPCVVNV-NNL---IYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred eeCCCcCcCCc-cceEEEE-CCE---EEEECCcCCCCcccceEEEEeCCCCee
Confidence 21 1111111 1122222 232 55556532 3577888877654
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=87.84 E-value=16 Score=46.05 Aligned_cols=173 Identities=11% Similarity=0.092 Sum_probs=85.8
Q ss_pred ECCCCCEEEEEc------CCcEEEEEECCCCeEEEEEecC---CCCeEEEEEcCCCCEEEEEe-----------------
Q 000251 278 FDRSGRYVITGS------DDRLVKIWSMETAYCLASCRGH---EGDITDLAVSSNNALVASAS----------------- 331 (1784)
Q Consensus 278 FSPDG~~LATGS------~DGtIkIWDl~Tgk~l~tL~gH---~~~VtsLafSpDg~lLASGS----------------- 331 (1784)
--|+|++++++- .-|-+.+.|-+|...+...... ..--.++-|.|..+.++|..
T Consensus 137 clp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 137 CLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp E-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHH
T ss_pred ecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhh
Confidence 346898888752 2357889998888877776532 23346777888888888863
Q ss_pred ---CCCEEEEEECCCCCeeEEecCCC--CceEEEEecCCCCccEEEEEEeCCCcEEEEec-CCCcccceeecCCCCCccc
Q 000251 332 ---NDCIIRVWRLPDGLPISVLRGHT--AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA-RYSQFSPRIYIPRPSDAVA 405 (1784)
Q Consensus 332 ---~DGtIrVWDl~tgk~i~~L~gH~--~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl-~tg~~l~~i~l~~~~~~~~ 405 (1784)
...++.+||+.+.+.++++.-.. ..+..|.|..+....+-++.+.-.++|..|-- ..+.......+..+.....
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 24689999999999999886332 35678888877654445555555556655533 4554333222211111111
Q ss_pred CCCCCC-CCCCCCCCCceEEEEECCCCCEEEEee-CCceEEEEcCCC
Q 000251 406 GRNMAP-SSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACK 450 (1784)
Q Consensus 406 g~~~~~-~~s~~~h~~~V~sLafSpdG~~LasGs-~DG~IrVWDl~t 450 (1784)
+..... ...+..-..-|+.|..|.|.++|.+.+ ..|.|+.||+..
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 110000 001111235589999999999988766 589999999964
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.30 E-value=1.4e+02 Score=41.37 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=53.2
Q ss_pred CCCCeEEEEEcCCC------CEEEEEeCCCEEEEEECCCCCeeEEe--cCCCCceEEEEecCCCCc------cEEEEEEe
Q 000251 311 HEGDITDLAVSSNN------ALVASASNDCIIRVWRLPDGLPISVL--RGHTAAVTAIAFSPRPGS------VYQLLSSS 376 (1784)
Q Consensus 311 H~~~VtsLafSpDg------~lLASGS~DGtIrVWDl~tgk~i~~L--~gH~~~VtsLafSPdg~~------~~~LaSgs 376 (1784)
-...|.|+++.++. ++++.|+.|+++++..+.-..++..+ ++-..++.++.+-+.... ..+|.+|-
T Consensus 581 l~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL 660 (1205)
T KOG1898|consen 581 LSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGL 660 (1205)
T ss_pred eceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEecc
Confidence 35678899998865 58999999999999998765555554 344556666665543221 24677787
Q ss_pred CCCcEEEE--ecCCCc
Q 000251 377 DDGTCRIW--DARYSQ 390 (1784)
Q Consensus 377 ~DGtIrIW--Dl~tg~ 390 (1784)
..|.+.-+ |.-+|+
T Consensus 661 ~NGvllR~~id~v~G~ 676 (1205)
T KOG1898|consen 661 RNGVLLRFVIDTVTGQ 676 (1205)
T ss_pred cccEEEEEEecccccc
Confidence 77766544 444443
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=87.11 E-value=79 Score=38.29 Aligned_cols=224 Identities=13% Similarity=0.150 Sum_probs=117.7
Q ss_pred EEEEEECCCCCEEEEEcCCcEEEEEECC------CC-eEEEEEec-----CCCCeEEEEEcCCCC------------EEE
Q 000251 273 VYCAIFDRSGRYVITGSDDRLVKIWSME------TA-YCLASCRG-----HEGDITDLAVSSNNA------------LVA 328 (1784)
Q Consensus 273 Vt~VaFSPDG~~LATGS~DGtIkIWDl~------Tg-k~l~tL~g-----H~~~VtsLafSpDg~------------lLA 328 (1784)
-+.|+|+|.+.+-++....+...+||.. .. .++-++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4678999999888888888999999986 12 23334432 234678888875333 256
Q ss_pred EEeCCCEEEEEECCCCCe-----eEEec-CCCCce-EEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCC
Q 000251 329 SASNDCIIRVWRLPDGLP-----ISVLR-GHTAAV-TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 401 (1784)
Q Consensus 329 SGS~DGtIrVWDl~tgk~-----i~~L~-gH~~~V-tsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~ 401 (1784)
.++.||+|.-|...-+.. ...+. +..+.| ..+++...+....+.++--..++|.++|-.-......-....+.
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 678899999998533222 11222 222333 45666655333334444456789999976433211000000000
Q ss_pred CcccCCCCCCCC-CCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeee--cCCCCCceEEEE
Q 000251 402 DAVAGRNMAPSS-SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL--SGHENDVNYVQF 478 (1784)
Q Consensus 402 ~~~~g~~~~~~~-s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l--~gH~~~V~sLaf 478 (1784)
+. ....+.. ..-+..-.|+-..-.+++..=+.|..-|.|-+||+. +..++.+ .+.-..-+.|+.
T Consensus 185 --iP-agyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~----------G~l~~r~as~g~LNaPWG~a~ 251 (336)
T TIGR03118 185 --LP-AGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN----------GQLLRRVASSGRLNAPWGLAI 251 (336)
T ss_pred --CC-CCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC----------CcEEEEeccCCcccCCceeee
Confidence 00 0000000 000000111111222333333444556789999884 3344433 233345566666
Q ss_pred ccCcccccccccCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeCCCCC
Q 000251 479 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 529 (1784)
Q Consensus 479 Spdglas~~~~~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~ 529 (1784)
.|.... .+++.+||---.||+|..+|..+++
T Consensus 252 APa~FG--------------------~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 252 APESFG--------------------SLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred ChhhhC--------------------CCCCCeEEeecCCceeEEecCCCCc
Confidence 654311 1335677776779999999998755
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.97 E-value=25 Score=40.67 Aligned_cols=173 Identities=12% Similarity=0.135 Sum_probs=98.3
Q ss_pred EEEEcCCcEEEEEE--CCCCeEEEEEec-----CCCCeEEEEEcCCCCEEEEEeCC---------CEEEEEECCCCCeeE
Q 000251 285 VITGSDDRLVKIWS--METAYCLASCRG-----HEGDITDLAVSSNNALVASASND---------CIIRVWRLPDGLPIS 348 (1784)
Q Consensus 285 LATGS~DGtIkIWD--l~Tgk~l~tL~g-----H~~~VtsLafSpDg~lLASGS~D---------GtIrVWDl~tgk~i~ 348 (1784)
.+.++..-.|.=|| .+.....+++.. ......+-..+|+|++.+-.-.| |.++.|-. +..+.
T Consensus 74 ~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~ 151 (310)
T KOG4499|consen 74 AVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQVE 151 (310)
T ss_pred EEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEecc--CCCce
Confidence 33333333444577 334444444321 13345566678999984433222 44555542 22333
Q ss_pred EecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEe--cCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEE
Q 000251 349 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD--ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 426 (1784)
Q Consensus 349 ~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWD--l~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLa 426 (1784)
.+...-+.-..++|..+.+ .+.++-+.+-+|..|| ..+|....+..+-. .+...+..... .-.++
T Consensus 152 ~i~~~v~IsNgl~Wd~d~K--~fY~iDsln~~V~a~dyd~~tG~~snr~~i~d------lrk~~~~e~~~-----PDGm~ 218 (310)
T KOG4499|consen 152 LIWNCVGISNGLAWDSDAK--KFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFD------LRKSQPFESLE-----PDGMT 218 (310)
T ss_pred eeehhccCCccccccccCc--EEEEEccCceEEeeeecCCCcccccCcceeEE------eccCCCcCCCC-----CCcce
Confidence 3333334456789997766 2445566777887787 66776544322100 11111111111 22344
Q ss_pred ECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccC
Q 000251 427 FNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 481 (1784)
Q Consensus 427 fSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpd 481 (1784)
...+|.+.++.-..++|...|..+ ++.+..+.-....|++++|-..
T Consensus 219 ID~eG~L~Va~~ng~~V~~~dp~t---------GK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 219 IDTEGNLYVATFNGGTVQKVDPTT---------GKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred EccCCcEEEEEecCcEEEEECCCC---------CcEEEEEEcCCCceEEEEecCC
Confidence 566889888888899999999976 4456677777889999999754
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.82 E-value=47 Score=41.07 Aligned_cols=110 Identities=17% Similarity=0.239 Sum_probs=61.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEE-EECCCCCeeEE-ecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCC
Q 000251 312 EGDITDLAVSSNNALVASASNDCIIRV-WRLPDGLPISV-LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 389 (1784)
Q Consensus 312 ~~~VtsLafSpDg~lLASGS~DGtIrV-WDl~tgk~i~~-L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg 389 (1784)
.+.+.++.+.+++.+++++. .|.+.. ++ ..++.-.. ...-...++++.+.+++. ++..+..|.+.+=..+.+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~----~~~vg~~G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGN----LWMLARGGQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCC----EEEEecCCEEEEccCCCC
Confidence 46789999999987776664 454432 22 22222222 233456789999999875 444456676653223333
Q ss_pred cccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEE
Q 000251 390 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLAR 444 (1784)
Q Consensus 390 ~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~Ir 444 (1784)
..-..... ........+..++|.+++..+++| .+|.|.
T Consensus 246 ~sW~~~~~----------------~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~ 283 (334)
T PRK13684 246 ESWSKPII----------------PEITNGYGYLDLAYRTPGEIWAGG-GNGTLL 283 (334)
T ss_pred CccccccC----------------CccccccceeeEEEcCCCCEEEEc-CCCeEE
Confidence 21111100 000122357889999988766655 466554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.53 E-value=97 Score=41.43 Aligned_cols=51 Identities=16% Similarity=0.314 Sum_probs=41.3
Q ss_pred CCEEEEEECCCCCeeEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCC
Q 000251 333 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 388 (1784)
Q Consensus 333 DGtIrVWDl~tgk~i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~t 388 (1784)
--.|+|+++ +|+.+..+.-..+.+..+.|+.+. .|++...+|++.+|++-.
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e----eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE----ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCc----eEEEEeccceEEEeecch
Confidence 346899996 687777766555688999999986 699999999999999853
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.04 E-value=1.6e+02 Score=40.83 Aligned_cols=75 Identities=17% Similarity=0.325 Sum_probs=50.2
Q ss_pred CCCEEEEEECCCC------CEEEEEcCCcEEEEEECCCCeEEEEEe--cCCCCeEEEEEcC---CC------CEEEEEeC
Q 000251 270 RNAVYCAIFDRSG------RYVITGSDDRLVKIWSMETAYCLASCR--GHEGDITDLAVSS---NN------ALVASASN 332 (1784)
Q Consensus 270 ~~~Vt~VaFSPDG------~~LATGS~DGtIkIWDl~Tgk~l~tL~--gH~~~VtsLafSp---Dg------~lLASGS~ 332 (1784)
...|.|+++.+++ ++++.|+.|+++++..+....++..+. +-...+.++.+-+ ++ -+|.+|-.
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~ 661 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR 661 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Confidence 4568899999876 689999999999999998666666553 4445555555433 22 25667777
Q ss_pred CCEEEEE--ECCCC
Q 000251 333 DCIIRVW--RLPDG 344 (1784)
Q Consensus 333 DGtIrVW--Dl~tg 344 (1784)
+|.+.=. |.-+|
T Consensus 662 NGvllR~~id~v~G 675 (1205)
T KOG1898|consen 662 NGVLLRFVIDTVTG 675 (1205)
T ss_pred ccEEEEEEeccccc
Confidence 7765433 44455
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.81 E-value=1.2 Score=58.42 Aligned_cols=71 Identities=13% Similarity=0.080 Sum_probs=44.6
Q ss_pred EcCCCCEEEEEecCCeEEEEECC-----CCceEEEEecCC-CCeEEEEEecCC------C--cEEEEEe-CCCcEEEEeC
Q 000251 575 WSLDNRFVLAAIMDCRICVWNAA-----DGSLVHSLTGHT-ESTYVLDVHPFN------P--RIAMSAG-YDGKTIVWDI 639 (1784)
Q Consensus 575 fSPDG~~LaSgs~DGsI~VWDl~-----tgklv~~L~gH~-~~VtsLafSPdd------~--~lLaSgs-~DG~IrIWDl 639 (1784)
.||||+.||.++.||.+++|-+. ...+++..+.|. ++-.|.-|+... + .++++++ ....+++|..
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 79999999999999998888653 345566677776 333332233210 1 2334433 3446888887
Q ss_pred CCCceE
Q 000251 640 WEGIPI 645 (1784)
Q Consensus 640 ~tG~~l 645 (1784)
...+|+
T Consensus 323 a~w~Cl 328 (1283)
T KOG1916|consen 323 APWQCL 328 (1283)
T ss_pred cchhhh
Confidence 666665
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.50 E-value=29 Score=43.92 Aligned_cols=141 Identities=11% Similarity=0.069 Sum_probs=86.4
Q ss_pred CCCEEE-EEcCCcEEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC--------EEEEEeCCCEEEEEECC-CCCeeEEe
Q 000251 281 SGRYVI-TGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA--------LVASASNDCIIRVWRLP-DGLPISVL 350 (1784)
Q Consensus 281 DG~~LA-TGS~DGtIkIWDl~Tgk~l~tL~gH~~~VtsLafSpDg~--------lLASGS~DGtIrVWDl~-tgk~i~~L 350 (1784)
|..+|. .|+.-..+.--|++-|+.+.+...|..- -+.|.|+.+ .|+--+ +..|.-.|.+ .|..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCCceeee
Confidence 444443 4555567777899999999998877655 567777543 344444 4444434432 34333332
Q ss_pred cC----CCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEE
Q 000251 351 RG----HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 426 (1784)
Q Consensus 351 ~g----H~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLa 426 (1784)
.. ......+..-...| ++++|+..|-|++||--.... .....+.+..|..+.
T Consensus 555 esKdY~tKn~Fss~~tTesG----yIa~as~kGDirLyDRig~rA--------------------KtalP~lG~aIk~id 610 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESG----YIAAASRKGDIRLYDRIGKRA--------------------KTALPGLGDAIKHID 610 (776)
T ss_pred eehhccccccccccccccCc----eEEEecCCCceeeehhhcchh--------------------hhcCcccccceeeeE
Confidence 21 11222333333333 899999999999998543221 111234567789999
Q ss_pred ECCCCCEEEEeeCCceEEEEcCC
Q 000251 427 FNANGTVFVTGSSDTLARVWNAC 449 (1784)
Q Consensus 427 fSpdG~~LasGs~DG~IrVWDl~ 449 (1784)
.+.+|.+|++.|. .++.+-|+.
T Consensus 611 vta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 611 VTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred eecCCcEEEEeec-ceEEEEecc
Confidence 9999999888775 467777764
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=85.32 E-value=18 Score=47.52 Aligned_cols=102 Identities=6% Similarity=-0.008 Sum_probs=49.4
Q ss_pred CCCCEEEEEecC------CeEEEEECCCCceEEE--EecCCCCeEEEEEecCCCcEEEEEeCCC--------cEEEEeCC
Q 000251 577 LDNRFVLAAIMD------CRICVWNAADGSLVHS--LTGHTESTYVLDVHPFNPRIAMSAGYDG--------KTIVWDIW 640 (1784)
Q Consensus 577 PDG~~LaSgs~D------GsI~VWDl~tgklv~~--L~gH~~~VtsLafSPdd~~lLaSgs~DG--------~IrIWDl~ 640 (1784)
-+++.++.|+.+ ..+..||..+.+-... +...... .+++. - ++.+++.||.++ .+.+||..
T Consensus 388 ~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~-~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 464 (534)
T PHA03098 388 VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIY-H-DGKIYVIGGISYIDNIKVYNIVESYNPV 464 (534)
T ss_pred ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEE-E-CCEEEEECCccCCCCCcccceEEEecCC
Confidence 366777777632 3588899876543221 1111111 12222 2 566777776532 37888887
Q ss_pred CCceEEEE--eccCcceEEEEEcCCCCEEEEEeCC-----CeEEEEECCC
Q 000251 641 EGIPIRIY--EISRFRLVDGKFSPDGASIILSDDV-----GQLYILNTGQ 683 (1784)
Q Consensus 641 tG~~l~tl--~~~~~~ItslafSPDGk~LAsgs~D-----G~I~IWdl~s 683 (1784)
+++-...- .........+. -+++.++.|+.+ ..|.+||..+
T Consensus 465 ~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 465 TNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 76533221 11111111122 256666666543 3455665544
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.22 E-value=64 Score=40.54 Aligned_cols=153 Identities=10% Similarity=0.080 Sum_probs=90.3
Q ss_pred CCCeEEEEEecCCC------CeEEEEEcCCCCEEEEEeCCCEEEEEECCC---CCeeEEecCCCCceEEEEecCCCCccE
Q 000251 300 ETAYCLASCRGHEG------DITDLAVSSNNALVASASNDCIIRVWRLPD---GLPISVLRGHTAAVTAIAFSPRPGSVY 370 (1784)
Q Consensus 300 ~Tgk~l~tL~gH~~------~VtsLafSpDg~lLASGS~DGtIrVWDl~t---gk~i~~L~gH~~~VtsLafSPdg~~~~ 370 (1784)
.+|...+.+..|.. .-+.+-|...++.|++. ..|.+.=|-+.. .-++..-....++|.+|.|++|.+
T Consensus 4 gsGalyhelihhPslfcnipesngvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk--- 79 (657)
T KOG2377|consen 4 GSGALYHELIHHPSLFCNIPESNGVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK--- 79 (657)
T ss_pred CCcceEEEEecCchhhccCCcccceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc---
Confidence 34555555554432 22334444444444433 334455555432 223333344667999999999987
Q ss_pred EEEEEeCCCcEEEEecCCCcccceeecCCCCCcccCCCCCCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCC
Q 000251 371 QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 450 (1784)
Q Consensus 371 ~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~t 450 (1784)
.|++--.+.+|.+++....+....... ........|...+|+.+ .-+|.-...| +-+|-+..
T Consensus 80 ilAVQR~~~~v~f~nf~~d~~~l~~~~----------------~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 80 ILAVQRTSKTVDFCNFIPDNSQLEYTQ----------------ECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred eEEEEecCceEEEEecCCCchhhHHHH----------------HhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 899999999999998744332222111 11123445888999866 4455554444 66776632
Q ss_pred CCCCCCCCCCcceeeecCCCCCceEEEEccCc
Q 000251 451 PNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 482 (1784)
Q Consensus 451 g~~~~s~~~~~~i~~l~gH~~~V~sLafSpdg 482 (1784)
....++....|.-.|+...|.++.
T Consensus 142 --------ekrslRlVks~~~nvnWy~yc~et 165 (657)
T KOG2377|consen 142 --------EKRSLRLVKSHNLNVNWYMYCPET 165 (657)
T ss_pred --------hhhhhhhhhhcccCccEEEEcccc
Confidence 133456667888899999998875
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=84.51 E-value=22 Score=44.47 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=54.4
Q ss_pred CCEEEEEECCCCCEEEEEc-----------CCc-EEEEEECCC--CeE--EEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 000251 271 NAVYCAIFDRSGRYVITGS-----------DDR-LVKIWSMET--AYC--LASCRGHEGDITDLAVSSNNALVASASNDC 334 (1784)
Q Consensus 271 ~~Vt~VaFSPDG~~LATGS-----------~DG-tIkIWDl~T--gk~--l~tL~gH~~~VtsLafSpDg~lLASGS~DG 334 (1784)
....+|+|+++|+++++-. ..+ .|.+++-.+ |+. ...+...-.....|+|.++| +++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3456889999999877743 223 777776543 332 23333334456889999988 444 44443
Q ss_pred EEEEEECCC-----CCe--e-EEecC----CCCceEEEEecCCCC
Q 000251 335 IIRVWRLPD-----GLP--I-SVLRG----HTAAVTAIAFSPRPG 367 (1784)
Q Consensus 335 tIrVWDl~t-----gk~--i-~~L~g----H~~~VtsLafSPdg~ 367 (1784)
.+++.+... ++. + ..+.. +......++|.||+.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~ 136 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW 136 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC
Confidence 333445421 121 1 11222 234578899999985
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=83.76 E-value=1.1 Score=34.21 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhccCCchhhHHHHHHH
Q 000251 77 REVYFLIMHFLSTGPCHRTYGQFWNE 102 (1784)
Q Consensus 77 ~ElyflI~~fL~~gp~~~aa~~L~~e 102 (1784)
.+|++||++||...++..+|+.|.+|
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~E 26 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKE 26 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhc
Confidence 37999999999999999999999877
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=83.74 E-value=22 Score=46.20 Aligned_cols=104 Identities=11% Similarity=-0.017 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCc-----EEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCC--CEEEEEECCCCCe--eEE
Q 000251 281 SGRYVITGSDDR-----LVKIWSMETAYCLAS--CRGHEGDITDLAVSSNNALVASASND--CIIRVWRLPDGLP--ISV 349 (1784)
Q Consensus 281 DG~~LATGS~DG-----tIkIWDl~Tgk~l~t--L~gH~~~VtsLafSpDg~lLASGS~D--GtIrVWDl~tgk~--i~~ 349 (1784)
++.++++||.++ ++..||..++..... +.........+ .-+|.+.+.|+.+ ..+..||..+++- +..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455667777542 577888887765432 21111112222 2367777888764 3577888765432 222
Q ss_pred ecCCCCceEEEEecCCCCccEEEEEEeCCC---cEEEEecCCCcc
Q 000251 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDG---TCRIWDARYSQF 391 (1784)
Q Consensus 350 L~gH~~~VtsLafSPdg~~~~~LaSgs~DG---tIrIWDl~tg~~ 391 (1784)
+....... +++. -++. ..+.||.++ .+..||..+...
T Consensus 349 l~~~r~~~-~~~~-~~g~---IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 349 LLKPRCNP-AVAS-INNV---IYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CCCCCccc-EEEE-ECCE---EEEecCcCCCCccEEEEeCCCCEE
Confidence 22111111 1222 2332 556666543 466788776553
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=83.53 E-value=21 Score=46.17 Aligned_cols=165 Identities=10% Similarity=0.122 Sum_probs=92.8
Q ss_pred CCceEEEEECCCCCEEEEee---CCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccccCCCCC
Q 000251 419 SHQIFCCAFNANGTVFVTGS---SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 495 (1784)
Q Consensus 419 ~~~V~sLafSpdG~~LasGs---~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~~~s~~~ 495 (1784)
-+.+..++|. ||+.++-.. .+|.+++=|. ...|.-..|..+.|.|.+.+.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds----------------~viGqFEhV~GlsW~P~~~~~---------- 71 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS----------------KVIGQFEHVHGLSWAPPCTAD---------- 71 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCc----------------cEeeccceeeeeeecCcccCC----------
Confidence 4568889998 665544322 1222222111 123445568999999875221
Q ss_pred CCCCccccccccCCeEEEEeCCCcEEEEeCCCCCCCcccccccccccccCCCCCCCCCCCCCCCceeccCCCCCeeEEEE
Q 000251 496 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 575 (1784)
Q Consensus 496 ~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf 575 (1784)
-..+++.-....|.||.+...... ...|.......+. ....---..+.|
T Consensus 72 ------------~paLLAVQHkkhVtVWqL~~s~~e--~~K~l~sQtcEi~-----------------e~~pvLpQGCVW 120 (671)
T PF15390_consen 72 ------------TPALLAVQHKKHVTVWQLCPSTTE--RNKLLMSQTCEIR-----------------EPFPVLPQGCVW 120 (671)
T ss_pred ------------CCceEEEeccceEEEEEeccCccc--cccceeeeeeecc-----------------CCcccCCCcccc
Confidence 135666777889999987632110 1111111100000 000001234679
Q ss_pred cCCCCEEEEEecCCeEEEEECCC--CceEEEEecCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 000251 576 SLDNRFVLAAIMDCRICVWNAAD--GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 642 (1784)
Q Consensus 576 SPDG~~LaSgs~DGsI~VWDl~t--gklv~~L~gH~~~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG 642 (1784)
+|....|++-.....-.++++.. ......+ ...+.|.|.+|.++|.+++++.|..=.-+|||-...
T Consensus 121 HPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 121 HPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 99988887765554444555543 2223334 346779999999988888888777667789986443
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=83.29 E-value=40 Score=45.30 Aligned_cols=113 Identities=14% Similarity=0.190 Sum_probs=73.6
Q ss_pred CCCeeEEEEc--CCCCEEEEEecCCeEEEEECCC-------C-------------ceEEEEecCCCCeEEEEEe--cCCC
Q 000251 567 PRGVNMIVWS--LDNRFVLAAIMDCRICVWNAAD-------G-------------SLVHSLTGHTESTYVLDVH--PFNP 622 (1784)
Q Consensus 567 ~~~VtsVafS--PDG~~LaSgs~DGsI~VWDl~t-------g-------------klv~~L~gH~~~VtsLafS--Pdd~ 622 (1784)
...|+.+... -+...|+++..||.|.+|.+.+ . ++-..+. -...+++++++ . ..
T Consensus 100 PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~ 177 (717)
T PF08728_consen 100 PHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KS 177 (717)
T ss_pred CceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cc
Confidence 3446666554 3556788899999999997632 0 0112222 23468999998 5 66
Q ss_pred cEEEEEeCCCcEEEEeCCCC--ceEEE-EeccCcceEEEEEcCCC-----C-EEEEEeCCCeEEEEEC
Q 000251 623 RIAMSAGYDGKTIVWDIWEG--IPIRI-YEISRFRLVDGKFSPDG-----A-SIILSDDVGQLYILNT 681 (1784)
Q Consensus 623 ~lLaSgs~DG~IrIWDl~tG--~~l~t-l~~~~~~ItslafSPDG-----k-~LAsgs~DG~I~IWdl 681 (1784)
++||.++....|.||-.... +.... -..+...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888887788888765432 11110 11244578888886653 2 7888999999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.09 E-value=0.35 Score=63.20 Aligned_cols=152 Identities=14% Similarity=0.156 Sum_probs=84.1
Q ss_pred CCEEEEEECCCCCe-eEEecCCCCceEEEEecCCCCccEEEEEEeCCCcEEEEecC--CCcccceeecCCCCCcccCCCC
Q 000251 333 DCIIRVWRLPDGLP-ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR--YSQFSPRIYIPRPSDAVAGRNM 409 (1784)
Q Consensus 333 DGtIrVWDl~tgk~-i~~L~gH~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~--tg~~l~~i~l~~~~~~~~g~~~ 409 (1784)
.+.|++-+..+... -..+++..+.|-.++|....- . .++ -.-|.+.+|++. .|+....+.+..
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~-p-k~~--~~vg~lfVy~vd~l~G~iq~~l~v~~---------- 175 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKC-P-KGR--RLVGELFVYDVDVLQGEIQPQLEVTP---------- 175 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCC-h-HHH--HHhhhhheeehHhhccccccceEEee----------
Confidence 35577766544321 123456778888888854321 1 222 334678899876 444444332210
Q ss_pred CCCCCCCCCCCceEEEEECCCCCEEEEeeCCceEEEEcCCCCCCCCCCCCCcceeeecCCCCCceEEEEccCcccccccc
Q 000251 410 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 489 (1784)
Q Consensus 410 ~~~~s~~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~tg~~~~s~~~~~~i~~l~gH~~~V~sLafSpdglas~~~~ 489 (1784)
..........|..+-|-++..++..+-.++.|++.+..+. ....+.+|...+..++|...|+.
T Consensus 176 --~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra----------~~~l~rsHs~~~~d~a~~~~g~~----- 238 (1283)
T KOG1916|consen 176 --ITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA----------LRSLFRSHSQRVTDMAFFAEGVL----- 238 (1283)
T ss_pred --cCcCCCCcceeeecccccccceeeeccCCCceeEeeechH----------HHHHHHhcCCCcccHHHHhhchh-----
Confidence 0001111123334444456778888888999998877532 22456679998888887765521
Q ss_pred cCCCCCCCCCccccccccCCeEEEEeCCCcEEEEeC
Q 000251 490 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIP 525 (1784)
Q Consensus 490 ~~s~~~~~~~~~~~~~~~~~~LVSgS~DGtIrIWDl 525 (1784)
.+.....++..|++...||.++.|.+
T Consensus 239 ----------~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 239 ----------KLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred ----------hheeeCCCCcEEEEeecCCccceeee
Confidence 11112233456677777777776644
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=81.16 E-value=29 Score=41.28 Aligned_cols=114 Identities=13% Similarity=0.095 Sum_probs=78.3
Q ss_pred eeEEEEcCCCCEEEEEecCC--eEEEEECCCCceEEEEecCCC-CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEE
Q 000251 570 VNMIVWSLDNRFVLAAIMDC--RICVWNAADGSLVHSLTGHTE-STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 646 (1784)
Q Consensus 570 VtsVafSPDG~~LaSgs~DG--sI~VWDl~tgklv~~L~gH~~-~VtsLafSPdd~~lLaSgs~DG~IrIWDl~tG~~l~ 646 (1784)
...+.|..+|.++-+.+.-| .|+.+|+.+|+.+....-... ---.++.. +.++..-.=.++...+||..+-+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence 45677878888888877666 699999999998765542221 11234443 34555555678899999999999999
Q ss_pred EEeccCcceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 000251 647 IYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688 (1784)
Q Consensus 647 tl~~~~~~ItslafSPDGk~LAsgs~DG~I~IWdl~sGe~~~ 688 (1784)
.+.. .+.-+.++ .||+.|+.++....|+++|..+-+..+
T Consensus 125 ~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~ 163 (264)
T PF05096_consen 125 TFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVR 163 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEE
T ss_pred EEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEE
Confidence 8873 34555665 788899999889999999987755443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=80.63 E-value=31 Score=43.53 Aligned_cols=142 Identities=11% Similarity=0.090 Sum_probs=64.4
Q ss_pred CcEEEEEECCCCeEEEEEecCC--CCeEEEEEcCC--CCEEEEEe-CCCEEEEE-ECCCCC----eeEEecC--------
Q 000251 291 DRLVKIWSMETAYCLASCRGHE--GDITDLAVSSN--NALVASAS-NDCIIRVW-RLPDGL----PISVLRG-------- 352 (1784)
Q Consensus 291 DGtIkIWDl~Tgk~l~tL~gH~--~~VtsLafSpD--g~lLASGS-~DGtIrVW-Dl~tgk----~i~~L~g-------- 352 (1784)
..++.+||+.+.+.++++.--. .....|.|..+ ..+=++|+ -.++|..| ....|. .+..+..
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 3589999999999999987433 23556777654 34333332 34455544 323332 1222211
Q ss_pred ---------CCCceEEEEecCCCCccEEEEEEeCCCcEEEEecCCCccc---ceeecCCCCCcccCCCCCCCCCCCCCCC
Q 000251 353 ---------HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS---PRIYIPRPSDAVAGRNMAPSSSAGPQSH 420 (1784)
Q Consensus 353 ---------H~~~VtsLafSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l---~~i~l~~~~~~~~g~~~~~~~s~~~h~~ 420 (1784)
-..-|+.|.+|.|.+ ++.+++-.+|.|+.||+...... .++.+.... .+...+...-..-.+
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDr--fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~----~~~~~~~v~g~~l~G 374 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDR--FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSI----RKGDHPVVKGKRLRG 374 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS---EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTT----T-B--TTS------S
T ss_pred cccccccccCCCceEeEEEccCCC--EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEe----ccCCCccccccccCC
Confidence 135689999999987 45567778999999999865432 222221110 000011111122334
Q ss_pred ceEEEEECCCCCEEEEee
Q 000251 421 QIFCCAFNANGTVFVTGS 438 (1784)
Q Consensus 421 ~V~sLafSpdG~~LasGs 438 (1784)
...-+..|-||+.|.+..
T Consensus 375 gPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 375 GPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTSSEEEEE-
T ss_pred CCCeEEEccCCeEEEEEe
Confidence 556788888998887654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=80.03 E-value=39 Score=43.09 Aligned_cols=164 Identities=16% Similarity=0.185 Sum_probs=69.2
Q ss_pred CCEEEEEECCCCCEEEEEcCCcEEEEEEC-------CCCeEEEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCEEEEEECC
Q 000251 271 NAVYCAIFDRSGRYVITGSDDRLVKIWSM-------ETAYCLASC-RGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 342 (1784)
Q Consensus 271 ~~Vt~VaFSPDG~~LATGS~DGtIkIWDl-------~Tgk~l~tL-~gH~~~VtsLafSpDg~lLASGS~DGtIrVWDl~ 342 (1784)
....+..|...|.-+++. |..+.||+. .++.....+ .++...+.+| +++....|.|+.|+--
T Consensus 27 ~~~~~gi~~e~g~Aw~~~--d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~I 96 (422)
T PF08801_consen 27 SPCSMGIFPEIGRAWIVV--DNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWESI 96 (422)
T ss_dssp TS-EEEEE-TTSEEEEEE--TTEEEEEE--SS--GG--EEEEE-----------SE--------EEEE-TT-EEEEES-T
T ss_pred cceEEEEEcccCEEEEEE--CCEEEEEeccCCCCCcCcccccceecCCCCCCCceE--------EEEEcCCCCEEecccc
Confidence 445666677777666654 568999998 444444444 3444444443 4455567888888632
Q ss_pred CC-CeeEEec------------CCCCceEEE-EecCCCCccEEEEEEeCCCcEEEEecCCCcccceeecCCCCCccc--C
Q 000251 343 DG-LPISVLR------------GHTAAVTAI-AFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA--G 406 (1784)
Q Consensus 343 tg-k~i~~L~------------gH~~~VtsL-afSPdg~~~~~LaSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~--g 406 (1784)
+. ..+.+.. .....+..+ ...+.+ ++.+...|.|.+...+....+..+.......... +
T Consensus 97 ~~~l~~~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~-----~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~~~i~ 171 (422)
T PF08801_consen 97 SHLLVLATPSQISLLGVSYSELLSGELSTSLTNVEPSG-----FIVSTSTGRIFFLGIRDSNGKYELSYQQLSGRCSKIN 171 (422)
T ss_dssp T-TT--EEEE------------------EEEEEEETTT-----EEEEETT--EEEEEE-TTS-EEEEE-TT---------
T ss_pred hhhhhcCccccccccccceeeecCCceEEECCCCceEE-----EEEECCCCeEEEEeCCCCCCcEEEEEEcCcCCccccc
Confidence 22 1111111 011122222 233332 5566666777766666533344443311111000 0
Q ss_pred -CCCCCCCCC----CCCCCceEEEEECCCCCEEEEeeCCceEEEEcCC
Q 000251 407 -RNMAPSSSA----GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNAC 449 (1784)
Q Consensus 407 -~~~~~~~s~----~~h~~~V~sLafSpdG~~LasGs~DG~IrVWDl~ 449 (1784)
......... ......|.+++..+..+.+++.+.+|.|.+|++.
T Consensus 172 ~~~~~~~~~~~p~~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 172 HTSSSIFSSLLPSFSDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp --------------------EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred cccCceeccccCCcccchhceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 000000111 1123449999999988999999999999999994
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1784 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-13 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-11 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-05 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 3e-11 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 3e-05 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-11 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 7e-05 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-11 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 7e-05 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-11 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 7e-05 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 3e-11 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 7e-05 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 4e-11 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 8e-05 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 4e-11 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 8e-05 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 4e-11 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 8e-05 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 4e-11 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 8e-05 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 4e-11 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 8e-05 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 4e-11 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 8e-05 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 4e-11 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 8e-05 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 4e-11 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 8e-05 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 5e-11 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 8e-05 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 6e-11 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 1e-04 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 7e-11 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-04 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-10 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 5e-10 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 3e-09 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 8e-08 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-06 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 9e-08 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-06 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-07 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 5e-05 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 2e-07 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 3e-07 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 3e-07 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-07 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 3e-07 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 3e-07 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 4e-07 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 5e-07 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-04 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 1e-06 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 1e-06 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-06 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 6e-05 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 2e-06 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 3e-06 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 5e-06 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 6e-06 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 8e-06 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 1e-05 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 1e-05 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 1e-05 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 1e-05 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 2e-05 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-05 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 2e-05 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 3e-05 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-05 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-05 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 3e-05 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 1e-04 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 1e-04 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 2e-04 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 4e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1784 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-31 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-22 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-17 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-11 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-25 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-14 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-24 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-22 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-20 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-13 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-10 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-23 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-20 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-11 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-21 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-16 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 7e-20 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-17 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-19 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 9e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 7e-19 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 9e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 8e-18 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 9e-17 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 6e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 8e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-16 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-15 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-16 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 8e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 9e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-15 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-12 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.003 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-14 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-11 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-13 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-08 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-12 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-09 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 4e-10 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 7e-10 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-09 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 9e-09 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-08 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 7e-08 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-08 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 4e-04 | |
| d1wuma1 | 118 | a.29.2.1 (A:715-832) P300/CAF histone acetyltransf | 3e-06 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 4e-06 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 3e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 8e-05 | |
| d3d7ca1 | 102 | a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T | 4e-05 | |
| d1eqfa1 | 139 | a.29.2.1 (A:1359-1497) TAFII250 double bromodomain | 4e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-04 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 124 bits (311), Expect = 2e-31
Identities = 69/372 (18%), Positives = 130/372 (34%), Gaps = 68/372 (18%)
Query: 267 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 326
GHR+ V IF +++ S+D +K+W ET + +GH + D++ + L
Sbjct: 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73
Query: 327 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
+AS S D I++W I + GH V++++ P ++S+S D T ++W+
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG---DHIVSASRDKTIKMWEV 130
Query: 387 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 446
+ + N +GT+ + S+D RVW
Sbjct: 131 QTGYCVKTFT--------------------GHREWVRMVRPNQDGTLIASCSNDQTVRVW 170
Query: 447 NACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWF 506
L H + V + ++ + S S A S+ K S
Sbjct: 171 VV---------ATKECKAELREHRHVVECISWAPESSYSSISEATGSE------TKKSGK 215
Query: 507 CHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 566
+++ SRD + +W + G ++
Sbjct: 216 PGPFLLSGSRDKTIKMWDVST-----------------------------GMCLMTLVGH 246
Query: 567 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAM 626
V +++ +F+L+ D + VW+ + + +L H LD H P +
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV- 305
Query: 627 SAGYDGKTIVWD 638
+ D VW+
Sbjct: 306 TGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 97.5 bits (241), Expect = 3e-22
Identities = 49/342 (14%), Positives = 95/342 (27%), Gaps = 27/342 (7%)
Query: 337 RVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY 396
+ W +P L GH + VT + F P ++S+S+D T ++WD F
Sbjct: 1 KEW-IPRPPEKYALSGHRSPVTRVIFHP---VFSVMVSASEDATIKVWDYETGDFERT-- 54
Query: 397 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDS 456
+ +D+V + S + + S
Sbjct: 55 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR------TMHGHDHNVSSVS 108
Query: 457 DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR 516
PN + V + + + + F+ P + I +CS
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL-----IASCSN 163
Query: 517 DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 576
D + +W+ + L+ + + G
Sbjct: 164 DQTVRVWVVAT---------KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 214
Query: 577 LDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIV 636
F+L+ D I +W+ + G + +L GH + H I S D V
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTLRV 273
Query: 637 WDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYI 678
WD ++ + F ++ + +
Sbjct: 274 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 82.9 bits (203), Expect = 2e-17
Identities = 49/268 (18%), Positives = 97/268 (36%), Gaps = 38/268 (14%)
Query: 256 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 315
Q + I+ + GH + V +G ++++ S D+ +K+W ++T YC+ + GH +
Sbjct: 87 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV 146
Query: 316 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 375
+ + + L+AS SND +RVW + + LR H V I+++P S
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES---SYSSIS 203
Query: 376 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV 435
G+ + F + + + + F++ G +
Sbjct: 204 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL 263
Query: 436 TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 495
+ + D RVW+ + + L+ HE+ V + F +
Sbjct: 264 SCADDKTLRVWDY---------KNKRCMKTLNAHEHFVTSLDFH----------KTAPY- 303
Query: 496 DSTPKFKNSWFCHDNIVTCSRDGSAIIW 523
+VT S D + +W
Sbjct: 304 ---------------VVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.4 bits (181), Expect = 2e-14
Identities = 56/338 (16%), Positives = 115/338 (34%), Gaps = 67/338 (19%)
Query: 257 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 316
+ + ++GH ++V FD SG+ + + S D +K+W + C+ + GH+ +++
Sbjct: 46 YETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS 105
Query: 317 DLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 376
+++ N + SAS D I++W + G + GH V + + + S S
Sbjct: 106 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG---TLIASCS 162
Query: 377 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 436
+D T R+W + + R S S+ ++ G ++
Sbjct: 163 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 222
Query: 437 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 496
GS D ++W+ + L GH+N V V F
Sbjct: 223 GSRDKTIKMWD---------VSTGMCLMTLVGHDNWVRGVLFHS---------------- 257
Query: 497 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 556
I++C+ D + +W +++R
Sbjct: 258 ----------GGKFILSCADDKTLRVWDYKNKR--------------------------- 280
Query: 557 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 594
+ + V + + +V+ +D + VW
Sbjct: 281 --CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 64.0 bits (154), Expect = 4e-11
Identities = 35/286 (12%), Positives = 70/286 (24%), Gaps = 41/286 (14%)
Query: 419 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 478
+ F+ +V V+ S D +VW+ + L GH + V + F
Sbjct: 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDY---------ETGDFERTLKGHTDSVQDISF 67
Query: 479 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 538
+ K F + + + +
Sbjct: 68 DHSGKLLAS-------CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120
Query: 539 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 598
+ +K+ + V M+ + D + + D + VW A
Sbjct: 121 RDKTIKMWEVQTGYCV------KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 174
Query: 599 GSLVHSLTGHTESTYVLDVHPFNPRIA-------------------MSAGYDGKTIVWDI 639
L H + P + + +S D +WD+
Sbjct: 175 KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 234
Query: 640 WEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 685
G+ + + F G I+ D L + +
Sbjct: 235 STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 280
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 108 bits (269), Expect = 1e-25
Identities = 46/375 (12%), Positives = 110/375 (29%), Gaps = 33/375 (8%)
Query: 267 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 326
RGH +V YVITG+DD++++++ L GH+G + L + L
Sbjct: 9 RGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 67
Query: 327 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
V+ +++ + ++ + ++ S D T +W
Sbjct: 68 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI--VTGSRDNTLHVWKL 125
Query: 387 RYSQFSPRIYIPRPSDAVAGRN-MAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 445
P V P + H + +G + V+GS D V
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185
Query: 446 WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 505
W+ + + + + ++++ + D+T + +
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM--------------DTTIRIWDLE 231
Query: 506 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 565
+ + AA +
Sbjct: 232 NGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH----------- 280
Query: 566 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS-LTGHTESTYVLDVHPFNPRI 624
++ I + +L + + + ++N G LVH+ + + + ++ +
Sbjct: 281 -HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTL 337
Query: 625 AMSAGYDGKTIVWDI 639
+ DG++ + +
Sbjct: 338 VAAVEKDGQSFLEIL 352
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 75.3 bits (183), Expect = 1e-14
Identities = 44/376 (11%), Positives = 102/376 (27%), Gaps = 35/376 (9%)
Query: 306 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPR 365
+ RGH + + + V + ++D +IRV+ + + L GH V A+ ++
Sbjct: 6 TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64
Query: 366 PGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 425
L+S S D T R+WD + + + +
Sbjct: 65 ----GILVSGSTDRTVRVWDIKKGCCTHVFEGH------------------NSTVRCLDI 102
Query: 426 AFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVAS 485
N VTGS D VW + + + + + + V
Sbjct: 103 VEYKNIKYIVTGSRDNTLHVWKL------PKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156
Query: 486 RFSLADSSKEDSTPKFKNSWFCHDNIVT--CSRDGSAIIWIPRSRRSHPKAARWTQAYHL 543
S + S +DN + + + +
Sbjct: 157 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 216
Query: 544 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH 603
+ + + ++ + L + A+
Sbjct: 217 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK 276
Query: 604 SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLV-DGKFSP 662
HT + + + + + +G + + ++++ G + + + F
Sbjct: 277 FSYHHTNLSAITTFYVSDNILV--SGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG 334
Query: 663 DGASIILSDDVGQLYI 678
+ D GQ ++
Sbjct: 335 KTLVAAVEKD-GQSFL 349
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.0 bits (138), Expect = 4e-09
Identities = 7/94 (7%), Positives = 30/94 (31%), Gaps = 5/94 (5%)
Query: 297 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI-SVLRGHTA 355
+ H +++ + + + + ++ ++ L G + + +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325
Query: 356 AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 389
+ ++ F + + + DG + +S
Sbjct: 326 QIWSVNFKGK----TLVAAVEKDGQSFLEILDFS 355
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.1 bits (128), Expect = 8e-08
Identities = 15/109 (13%), Positives = 33/109 (30%), Gaps = 3/109 (2%)
Query: 234 FTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRL 293
+ + A + K H N F S +++GS+++
Sbjct: 246 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ- 304
Query: 294 VKIWSMETAYCLAS-CRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 341
I+++ + + + I + LVA+ D + L
Sbjct: 305 FNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEIL 352
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 1e-04
Identities = 16/123 (13%), Positives = 39/123 (31%)
Query: 574 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK 633
++ +V+ D I V+++ + + L+GH + L ++ S +
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVR 77
Query: 634 TIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYD 693
+ S R +D + I+ L++ + S D +
Sbjct: 78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 137
Query: 694 QFF 696
+
Sbjct: 138 HDY 140
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 103 bits (257), Expect = 3e-24
Identities = 62/380 (16%), Positives = 117/380 (30%), Gaps = 83/380 (21%)
Query: 259 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDL 318
+M+ + +RGH +Y + R +++ S D + IW T + + +
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 319 AVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD 378
A + + VA D I ++ L + A T R Q+++SS D
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163
Query: 379 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 438
TC +WD Q + + + + + +FV+G+
Sbjct: 164 TTCALWDIETGQQTTTFT--------------------GHTGDVMSLSLAPDTRLFVSGA 203
Query: 439 SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 498
D A++W+ + +GHE+D+N + F
Sbjct: 204 CDASAKLWDV---------REGMCRQTFTGHESDINAICFFP------------------ 236
Query: 499 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGG 558
+ T S D + ++ R+ + +
Sbjct: 237 --------NGNAFATGSDDATCRLFDLRADQELMTYSHDNI------------------- 269
Query: 559 PRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH 618
G+ + +S R +LA D VW+A L GH L V
Sbjct: 270 --------ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 619 PFNPRIAMSAGYDGKTIVWD 638
+A + +D +W+
Sbjct: 322 DDGMAVA-TGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 99.4 bits (246), Expect = 1e-22
Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 5/131 (3%)
Query: 257 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKI--WSMETAYCLASCRGHEGD 314
V++ + GH + + F +G TGSDD ++ + S
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272
Query: 315 ITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 374
IT ++ S + L+ + +D VW VL GH V+ + + + +
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG---MAVAT 329
Query: 375 SSDDGTCRIWD 385
S D +IW+
Sbjct: 330 GSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 92.9 bits (229), Expect = 1e-20
Identities = 42/194 (21%), Positives = 68/194 (35%), Gaps = 25/194 (12%)
Query: 256 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 315
++ Q GH V R ++G+ D K+W + C + GHE DI
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 316 TDLAVSSNNALVASASNDCIIRV--WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLL 373
+ N A+ S+D R+ R L +T+++FS S LL
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK---SGRLLL 286
Query: 374 SSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV 433
+ DD C +WDA + +++ C +G
Sbjct: 287 AGYDDFNCNVWDA--------------------LKADRAGVLAGHDNRVSCLGVTDDGMA 326
Query: 434 FVTGSSDTLARVWN 447
TGS D+ ++WN
Sbjct: 327 VATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 75.9 bits (185), Expect = 6e-15
Identities = 18/90 (20%), Positives = 33/90 (36%)
Query: 250 IAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR 309
+ + F +SGR ++ G DD +W A
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 310 GHEGDITDLAVSSNNALVASASNDCIIRVW 339
GH+ ++ L V+ + VA+ S D +++W
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 69.4 bits (168), Expect = 8e-13
Identities = 29/269 (10%), Positives = 72/269 (26%), Gaps = 22/269 (8%)
Query: 419 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 478
+I+ + + + V+ S D +W++ +++ + + V +
Sbjct: 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT---------TNKVHAIPLRSSWVMTCAY 105
Query: 479 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 538
+ D+ K + + + + + T
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 539 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 598
A G V + + D R ++ D +W+ +
Sbjct: 166 CALWDIETGQQTTTFTGHTGD----------VMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 599 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR--LV 656
G + TGH + P A + D ++D+ + Y +
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFA-TGSDDATCRLFDLRADQELMTYSHDNIICGIT 274
Query: 657 DGKFSPDGASIILSDDVGQLYILNTGQGE 685
FS G ++ D + + + +
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.7 bits (148), Expect = 3e-10
Identities = 45/332 (13%), Positives = 86/332 (25%), Gaps = 45/332 (13%)
Query: 349 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN 408
LRGH A + A+ + L+S+S DG IWD+ + I +
Sbjct: 50 TLRGHLAKIYAMHWGTDSR---LLVSASQDGKLIIWDSYTTNKVHAIPL----------- 95
Query: 409 MAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 468
+S + CA+ +G G D + ++N +
Sbjct: 96 ---------RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146
Query: 469 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 528
S D+T + G +
Sbjct: 147 SCCRFLDDNQIVT-----------SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 529 RSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD 588
+ + L G RQ +N I + + D
Sbjct: 196 TRLFVSGACDASAKL--------WDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 589 CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP--RIAMSAGYDGKTIVWDIWEGIPIR 646
+++ + + + + V F+ R+ ++ D VWD +
Sbjct: 248 ATCRLFDLRADQELMTYSHDNIICGITSVS-FSKSGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 647 IYEISRFRLVDGKFSPDGASIILSDDVGQLYI 678
+ R+ + DG ++ L I
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 102 bits (253), Expect = 3e-23
Identities = 59/398 (14%), Positives = 113/398 (28%), Gaps = 58/398 (14%)
Query: 248 YAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS 307
Y + P+ + + + H + V C F G Y+ TG + +++ + +A
Sbjct: 40 YILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKT-TQVYRVSDGSLVAR 98
Query: 308 CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG 367
D + N + +S+ I V PDG ++ + +
Sbjct: 99 LSDDSAANKD--PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV 156
Query: 368 SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 427
+ Q R D G+ S +
Sbjct: 157 MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS---IEDGVTTVAVS 213
Query: 428 NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 487
+G GS D RVW++ + +E +GH++ V V F+
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES--GTGHKDSVYSVVFTRD------ 265
Query: 488 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPP 547
++V+ S D S +W ++
Sbjct: 266 --------------------GQSVVSGSLDRSVKLWNLQNAN-----------------N 288
Query: 548 PPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG 607
P G + V + + ++ ++L+ D + W+ G+ + L G
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG 348
Query: 608 HTESTYVLDV------HPFNPRIAMSAGYDGKTIVWDI 639
H S + V P A + D K +W
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFA-TGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 92.2 bits (227), Expect = 4e-20
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 15/139 (10%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA------------YCLASCRGH 311
+ GH+++VY +F R G+ V++GS DR VK+W+++ A C + GH
Sbjct: 248 ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 307
Query: 312 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG---S 368
+ + +A + N+ + S S D + W G P+ +L+GH +V ++A +
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367
Query: 369 VYQLLSSSDDGTCRIWDAR 387
+ S D RIW +
Sbjct: 368 YNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.5 bits (202), Expect = 6e-17
Identities = 50/286 (17%), Positives = 93/286 (32%), Gaps = 47/286 (16%)
Query: 245 AACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC 304
++ + + ++GH +Y + SG +++GS DR V+IW + T C
Sbjct: 138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 197
Query: 305 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG-------LPISVLRGHTAAV 357
+ +G T + +A+ S D +RVW G GH +V
Sbjct: 198 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 257
Query: 358 TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 417
++ F+ ++S S D + ++W+ + + P
Sbjct: 258 YSVVFTRDG---QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG-------- 306
Query: 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 477
+ A N ++GS D W+ + + + +L GH N V V
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDK---------KSGNPLLMLQGHRNSVISVA 357
Query: 478 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 523
+ + ++ T S D A IW
Sbjct: 358 VANGSSLGP--------------------EYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.9 bits (190), Expect = 2e-15
Identities = 55/371 (14%), Positives = 109/371 (29%), Gaps = 36/371 (9%)
Query: 325 ALVASASNDCIIRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 382
AL ++ I+ LP + + + + HT+ V + FS + L++ + T +
Sbjct: 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG----EYLATGCNKTTQ 86
Query: 383 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 442
++ R+ S A +SS+ I F+ +G TG+ D L
Sbjct: 87 VYRVSDGSLVARLS--DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL 144
Query: 443 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 502
R+W+ Q + + + + + R + + T +
Sbjct: 145 IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 204
Query: 503 NSWFCH-------DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 555
+ I S D + +W + +
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER------------LDSENESGTG 252
Query: 556 RGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 615
++ T G +++ SLD L + + + S +T +VL
Sbjct: 253 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312
Query: 616 DV--HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE------ISRFRLVDGKFSPDGASI 667
V + I S D + WD G P+ + + IS P+
Sbjct: 313 SVATTQNDEYIL-SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 371
Query: 668 ILSDDVGQLYI 678
+ I
Sbjct: 372 ATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.0 bits (154), Expect = 7e-11
Identities = 42/362 (11%), Positives = 91/362 (25%), Gaps = 45/362 (12%)
Query: 345 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 404
+P + H+ + SV L + +++ +PR D
Sbjct: 4 VPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPA---------LPREIDVE 54
Query: 405 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA---------CKPNTDD 455
+++ +S + C F+ +G TG + T +V+ + +
Sbjct: 55 LHKSLDHTSV-------VCCVKFSNDGEYLATGCNKTT-QVYRVSDGSLVARLSDDSAAN 106
Query: 456 SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS 515
D N + + V FS LA +++ + I+
Sbjct: 107 KDPENLNTSSSPSSDLYIRSVCFS----PDGKFLATGAEDRLIRIWDIENRKIVMILQGH 162
Query: 516 RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 575
+ S + + + +P I
Sbjct: 163 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA 222
Query: 576 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 635
+R V + D S S TGH +S Y + + S D
Sbjct: 223 GSLDRAV--RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV-SGSLDRSVK 279
Query: 636 VWDIWEGIPIRIYEISRF------------RLVDGKFSPDGASIILSDDVGQLYILNTGQ 683
+W++ + ++ + + I+ + +
Sbjct: 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 339
Query: 684 GE 685
G
Sbjct: 340 GN 341
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 95.3 bits (235), Expect = 4e-21
Identities = 39/403 (9%), Positives = 97/403 (24%), Gaps = 83/403 (20%)
Query: 267 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR------GHEGDITDLAV 320
+ H ++ + ++ S D +K+W + H+ + + V
Sbjct: 11 KAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 321 -------SSNNALVASASNDCIIRVWRLPDGLPISVLRGHT----------AAVTAIAFS 363
+ LVA+ S + +R+ + + A+ +
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128
Query: 364 PRPGSVYQ--LLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 421
+ L+++ GT IW S + + S S
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT--PSQF 186
Query: 422 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 481
+ G + TG ++ ++ + + H + S V +
Sbjct: 187 ATSVDISERGLI-ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF------ 239
Query: 482 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 541
+ S + +
Sbjct: 240 -----------------------SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 276
Query: 542 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL 601
H V + ++ + +A D ++ W+
Sbjct: 277 H-------------SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 323
Query: 602 VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI----VWDIW 640
+ +L H + + +A+ G ++ V+D+
Sbjct: 324 ITTLNMHCDD-----IEIEEDILAVDE--HGDSLAEPGVFDVK 359
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 81.8 bits (200), Expect = 1e-16
Identities = 31/380 (8%), Positives = 85/380 (22%), Gaps = 51/380 (13%)
Query: 347 ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAG 406
+ + H A + +++ +S S DG ++WD +
Sbjct: 7 ANAGKAHDADIFSVSACNS-----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61
Query: 407 RNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL 466
+ T S + + ++D+L
Sbjct: 62 GLHHVDVLQA-------IERDAFELCLVATTSFSGDLLFYR-ITREDETKKVIFEKLDLL 113
Query: 467 S--GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWI 524
++ +++ ++ T D + + + S + +
Sbjct: 114 DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173
Query: 525 PRSRRSHPKAARWTQA---------------YHLKVPPPPMPPQPPRGGPRQRILPTPRG 569
+ S +++ + +++ + ++
Sbjct: 174 QGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233
Query: 570 VNMIVWSLDNRFVLAAIMDCRICVWNAAD----------------GSLVHSLTGHTESTY 613
+ + +S + A + H+
Sbjct: 234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 293
Query: 614 VLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS----RFRLVDGKFSPDGASIIL 669
L + + AG+DGK WD+ I + G S+
Sbjct: 294 SLSFNDSGETLCS-AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE 352
Query: 670 SDDVGQLYILNTGQGESQKD 689
++ + D
Sbjct: 353 PGVFDVKFLKKGWRSGMGAD 372
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 5e-07
Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 7/121 (5%)
Query: 247 CYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLA 306
I S Q H + V F+ SG + + D ++ W ++T +
Sbjct: 266 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT 325
Query: 307 SCRGHEGDI----TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAF 362
+ H DI LAV + +A + V L G + ++ +
Sbjct: 326 TLNMHCDDIEIEEDILAVDEHGDSLAEPG---VFDVKFLKKGWRSGMGADLNESLCCVCL 382
Query: 363 S 363
Sbjct: 383 D 383
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.2 bits (105), Expect = 5e-05
Identities = 15/146 (10%), Positives = 38/146 (26%), Gaps = 16/146 (10%)
Query: 256 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSM---------------- 299
+ ++ + + N++ F G + D ++
Sbjct: 217 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 276
Query: 300 ETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTA 359
++ H + L+ + + + SA D +R W + I+ L H +
Sbjct: 277 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI 336
Query: 360 IAFSPRPGSVYQLLSSSDDGTCRIWD 385
L+ +
Sbjct: 337 EEDILAVDEHGDSLAEPGVFDVKFLK 362
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.0 bits (224), Expect = 7e-20
Identities = 45/385 (11%), Positives = 91/385 (23%), Gaps = 65/385 (16%)
Query: 297 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAA 356
W +GH+ + + + S S+D ++VW G + L GHT
Sbjct: 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 357 VTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 416
V + + + + V ++
Sbjct: 60 VWSSQMRDNIIISGS-------TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS 112
Query: 417 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 476
G A S + + V +
Sbjct: 113 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT 172
Query: 477 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 536
+ T + + F ++V+ S D S +W
Sbjct: 173 L-----------------QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE---------- 205
Query: 537 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL--DNRFVLAAIMDCRICVW 594
+ T G + + + +++ D + +W
Sbjct: 206 -----------------------TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 242
Query: 595 NAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR 654
+ G + +L G + + FN +++ DG +WD+ G IR
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 302
Query: 655 LVDG-----KFSPDGASIILSDDVG 674
G + S + G
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNG 327
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.3 bits (204), Expect = 2e-17
Identities = 70/429 (16%), Positives = 131/429 (30%), Gaps = 141/429 (32%)
Query: 257 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 316
++++ K ++GH + V G +++GSDD +K+WS T CL + GH G +
Sbjct: 3 RGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 61
Query: 317 DLAVSSN--------------------------------------NALVASASNDCIIRV 338
+ N V S S D +RV
Sbjct: 62 SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRV 121
Query: 339 WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIP 398
W + G + VL GH AAV + + R +++S + D ++WD +
Sbjct: 122 WDIETGQCLHVLMGHVAAVRCVQYDGR-----RVVSGAYDFMVKVWDPETETCLHTL--- 173
Query: 399 RPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 458
Q H + +G V+GS DT RVW+ +
Sbjct: 174 -------------------QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV---------E 205
Query: 459 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG 518
+ I L+GH++ + ++ + +V+ + D
Sbjct: 206 TGNCIHTLTGHQSLTSGMELKD----------------------------NILVSGNADS 237
Query: 519 SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 578
+ IW ++ + + + +
Sbjct: 238 TVKIWDIKTGQCLQTLQGPNKHQS----------------------------AVTCLQFN 269
Query: 579 NRFVLAAIMDCRICVWNAADGSLVHSLT-----GHTESTYVLDVHPFNPRIAMSAGYDG- 632
FV+ + D + +W+ G + +L G + + A +G
Sbjct: 270 KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCA-VGSRNGT 328
Query: 633 ---KTIVWD 638
K +V D
Sbjct: 329 EETKLLVLD 337
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.1 bits (219), Expect = 3e-19
Identities = 39/343 (11%), Positives = 94/343 (27%), Gaps = 43/343 (12%)
Query: 318 LAVSSNNALVA-SASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 376
V+++ + D +I I+ L H V A+ S + + +
Sbjct: 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNP----TRHVYTG 69
Query: 377 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 436
G ++WD + + + + + I C +G +
Sbjct: 70 GKGCVKVWDISHPGNKSPVSQLDCLN---------------RDNYIRSCKLLPDGCTLIV 114
Query: 437 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 496
G + +W+ P + + C ++ D +
Sbjct: 115 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 174
Query: 497 STPKFKNSW---------FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPP 547
+F+ + T D + W R R + +Q + L P
Sbjct: 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP 234
Query: 548 P-----------PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 596
+ + ++ V + ++ ++ ++ D + W
Sbjct: 235 TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294
Query: 597 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639
G+ + + S D+ + I + D K V+++
Sbjct: 295 PYGASIFQS-KESSSVLSCDISVDDKYIV-TGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.1 bits (167), Expect = 1e-12
Identities = 22/182 (12%), Positives = 51/182 (28%), Gaps = 5/182 (2%)
Query: 207 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 266
W VR G + + + +
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220
Query: 267 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 326
+ ++ + +G ++ G + V++ + HE + L +
Sbjct: 221 HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKW 279
Query: 327 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
S D ++ WR P G I +++V + S +++ S D +++
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK---YIVTGSGDKKATVYEV 335
Query: 387 RY 388
Y
Sbjct: 336 IY 337
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.1 bits (167), Expect = 1e-12
Identities = 18/147 (12%), Positives = 42/147 (28%), Gaps = 11/147 (7%)
Query: 195 SYDRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPS 254
+ D D H + Q+ LG G + ++
Sbjct: 200 TGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV------ 253
Query: 255 TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD 314
+ ++ H + V F G++ ++ D L+ W +
Sbjct: 254 ----NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSS 308
Query: 315 ITDLAVSSNNALVASASNDCIIRVWRL 341
+ +S ++ + + S D V+ +
Sbjct: 309 VLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.4 bits (160), Expect = 9e-12
Identities = 38/338 (11%), Positives = 73/338 (21%), Gaps = 62/338 (18%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLA-----SCRGHEGDITDLAVSS 322
H V R+V TG VK+W + + C + I +
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 323 NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 382
+ + + +W + + L+SS
Sbjct: 108 DGCTLIVGGEASTLSIWD---------------------LAAPTPRIKAELTSSAPACYA 146
Query: 383 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 442
+ + S+ N + C + +GT TG D
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206
Query: 443 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 502
R W+ + +I L + + K
Sbjct: 207 VRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHES 266
Query: 503 NSW---FCHDN--IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 557
F + V+ +D W
Sbjct: 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPY------------------------------ 296
Query: 558 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 595
G V S+D+++++ D + V+
Sbjct: 297 GASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (124), Expect = 3e-07
Identities = 31/241 (12%), Positives = 58/241 (24%), Gaps = 26/241 (10%)
Query: 207 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 266
+ + + C + +++
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179
Query: 267 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 326
+GH + C G + TG D V+ W + I L
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-LQQHDFTSQIFSLGYCPTGEW 238
Query: 327 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
+A + V + L H + V ++ F+ +S+ D W
Sbjct: 239 LAVGMESSNVEVLHVNKP-DKYQLHLHESCVLSLKFAY---CGKWFVSTGKDNLLNAWRT 294
Query: 387 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 446
Y + +S + C + + VTGS D A V+
Sbjct: 295 PYGASIFQS---------------------KESSSVLSCDISVDDKYIVTGSGDKKATVY 333
Query: 447 N 447
Sbjct: 334 E 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (121), Expect = 6e-07
Identities = 28/291 (9%), Positives = 60/291 (20%), Gaps = 40/291 (13%)
Query: 419 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 478
+ + TG + +VW+ + + P ++D +N + +
Sbjct: 51 GEVVCAVTISNPTRHVYTGGKGCV-KVWDI---SHPGNKSPVSQLD-CLNRDNYIRSCKL 105
Query: 479 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 538
+ + S +T S + I +
Sbjct: 106 LPD--GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163
Query: 539 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 598
+ + Q + + + V + + +
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF 223
Query: 599 GSLVHSLT-------------------------------GHTESTYVLDVHPFNPRIAMS 627
S + SL H L S
Sbjct: 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFV-S 282
Query: 628 AGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYI 678
G D W G I + S ++ S D I+ + +
Sbjct: 283 TGKDNLLNAWRTPYGASIFQSKESS-SVLSCDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (110), Expect = 1e-05
Identities = 36/276 (13%), Positives = 58/276 (21%), Gaps = 55/276 (19%)
Query: 267 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 326
N + G +I G + + IW + A++ +
Sbjct: 94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS 153
Query: 327 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD--------- 377
S + V + A D
Sbjct: 154 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213
Query: 378 --------DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ--IFCCAF 427
D T +I+ Y + + S V ++ H+ + F
Sbjct: 214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF 273
Query: 428 NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 487
G FV+ D L W P S + V S
Sbjct: 274 AYCGKWFVSTGKDNLLNAWRT----------PYGASIFQSKESSSVLSCDIS-------- 315
Query: 488 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 523
D IVT S D A ++
Sbjct: 316 --VDDKY----------------IVTGSGDKKATVY 333
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 87.7 bits (215), Expect = 7e-19
Identities = 42/333 (12%), Positives = 85/333 (25%), Gaps = 31/333 (9%)
Query: 313 GDITDLAVSSNNALVASASNDC-IIRVWRLPDG--LPISVLRGH-TAAVTAIAFSPRPGS 368
T L+ +A +R D P+ GH ++ VT + FSP GS
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 369 VYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 428
Y L S + G +W + + S + + S + I +++
Sbjct: 78 QY-LCSGDESGKVIVWGWTFDKESNSVE------------VNVKSEFQVLAGPISDISWD 124
Query: 429 ANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFS 488
G + + + + ++ + S
Sbjct: 125 FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSV 184
Query: 489 LADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 548
+ + + V + S K + + +
Sbjct: 185 VFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI 244
Query: 549 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH 608
+P +G + LD++ D I VW+ V T
Sbjct: 245 EDDQEPVQG------------GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD 292
Query: 609 TESTYV--LDVHPFNPRIAMSAGYDGKTIVWDI 639
+ + V +S DG +++
Sbjct: 293 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.8 bits (140), Expect = 2e-09
Identities = 18/151 (11%), Positives = 45/151 (29%), Gaps = 3/151 (1%)
Query: 194 LSYDRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKP 253
D G P +G +R++ ++ +
Sbjct: 175 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 234
Query: 254 STMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEG 313
+ ++ I+ + A+ + T D +++W + T+ C+ +
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294
Query: 314 DITDLAVS---SNNALVASASNDCIIRVWRL 341
+ + V + N + S S D + + L
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.9 bits (130), Expect = 4e-08
Identities = 17/179 (9%), Positives = 42/179 (23%), Gaps = 4/179 (2%)
Query: 211 HMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHR 270
+ + +R R+ ++ + + + +
Sbjct: 146 WDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG 205
Query: 271 NAVYCA----IFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 326
+ V V + S E + + ++
Sbjct: 206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 265
Query: 327 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 385
A+ D IRVW + + + +++S S DGT ++
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.8 bits (127), Expect = 9e-08
Identities = 31/327 (9%), Positives = 76/327 (23%), Gaps = 31/327 (9%)
Query: 348 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 407
S R T +++ P ++ R D S+ P +
Sbjct: 14 STQRNF---TTHLSYDPTTNAI--AYPCGKSAFVRCLDDGDSKVPPVVQF---------- 58
Query: 408 NMAPSSSAGPQSHQIFCCAF--NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 465
G S + F +G VW + + + +
Sbjct: 59 -------TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG-WTFDKESNSVEVNVKSE 110
Query: 466 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIP 525
++ + + R D+ F + + I
Sbjct: 111 FQVLAGPISDISWDFE---GRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS-QRINACH 166
Query: 526 RSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 585
+ ++ + P + R V S + + +
Sbjct: 167 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 226
Query: 586 IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 645
+ + + + + + + G D VWD+ +
Sbjct: 227 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV 286
Query: 646 RIYEISRFRLVDGK--FSPDGASIILS 670
+ + + + +L + + G I+S
Sbjct: 287 QKWTLDKQQLGNQQVGVVATGNGRIIS 313
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.1 bits (107), Expect = 2e-05
Identities = 30/306 (9%), Positives = 71/306 (23%), Gaps = 72/306 (23%)
Query: 258 QKMQNIKRVRGHR-NAVYCAIF--DRSGRYVITGSDDRLVKIWSMETAYC--------LA 306
K+ + + GH + V F + +Y+ +G + V +W +
Sbjct: 50 SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKS 109
Query: 307 SCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRP 366
+ G I+D++ + + S+ + A +
Sbjct: 110 EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ 169
Query: 367 GSVYQLLSSSDDGTCRIWDA-----------------------------RYSQFSPRIYI 397
+ ++ DDG+ + +
Sbjct: 170 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK 229
Query: 398 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 457
D +G + + F T +D RVW+
Sbjct: 230 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV--------- 280
Query: 458 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD 517
+ + + + + Q + I++ S D
Sbjct: 281 TTSKCVQKWTLDKQQLGNQQVGV-----------------------VATGNGRIISLSLD 317
Query: 518 GSAIIW 523
G+ +
Sbjct: 318 GTLNFY 323
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 84.2 bits (206), Expect = 8e-18
Identities = 34/328 (10%), Positives = 67/328 (20%), Gaps = 36/328 (10%)
Query: 313 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL 372
G L + + + + + + H+ T SP S Y
Sbjct: 18 GTAVVLGNTPAGDKIQYCNGTSVY-TVPVGSLTDTEIYTEHSHQTTVAKTSP---SGYYC 73
Query: 373 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 432
S G RIWD + + IP P S A
Sbjct: 74 ASGDVHGNVRIWDTTQTTHILKTTIPV--------FSGPVKDISWDSESKRIAAVGEGRE 125
Query: 433 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 492
F + + + + + + +
Sbjct: 126 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF 185
Query: 493 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 552
+ + DG+ +++ +
Sbjct: 186 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 245
Query: 553 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTEST 612
P D + +A D I +WN A + ++ T
Sbjct: 246 WSP----------------------DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE 283
Query: 613 -YVLDVHPFNPRIAMSAGYDGKTIVWDI 639
L + + S +G +
Sbjct: 284 DQQLGIIWTKQALV-SISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 55.3 bits (131), Expect = 3e-08
Identities = 17/134 (12%), Positives = 35/134 (26%), Gaps = 1/134 (0%)
Query: 207 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 266
P +R G Y + + +
Sbjct: 175 EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN 234
Query: 267 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEG-DITDLAVSSNNA 325
H +V+ + G + + S D+ +KIW++ T + + L +
Sbjct: 235 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 294
Query: 326 LVASASNDCIIRVW 339
+ S S + I
Sbjct: 295 ALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.1 bits (128), Expect = 6e-08
Identities = 24/262 (9%), Positives = 55/262 (20%), Gaps = 9/262 (3%)
Query: 270 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVAS 329
R +G + + V + + H T S + AS
Sbjct: 17 RGTAVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75
Query: 330 ASNDCIIRVWRLPDG--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
+R+W + + + + V I++ + + +
Sbjct: 76 GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 135
Query: 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ R ++V + P T T
Sbjct: 136 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV 195
Query: 448 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 507
P+ + ++ + D +
Sbjct: 196 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV------AHSGSVFGLTWSPD 249
Query: 508 HDNIVTCSRDGSAIIWIPRSRR 529
I + S D + IW + +
Sbjct: 250 GTKIASASADKTIKIWNVATLK 271
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.1 bits (120), Expect = 6e-07
Identities = 23/180 (12%), Positives = 47/180 (26%), Gaps = 4/180 (2%)
Query: 207 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 266
+ + F + A + ++ K V
Sbjct: 133 FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV 192
Query: 267 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 326
R ++F +G + + + H G + L S +
Sbjct: 193 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 252
Query: 327 VASASNDCIIRVWRLPDGLPISVLRGHT-AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 385
+ASAS D I++W + + T + + L+S S +G +
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA---LVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.1 bits (115), Expect = 2e-06
Identities = 35/334 (10%), Positives = 73/334 (21%), Gaps = 39/334 (11%)
Query: 348 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 407
RG + +P + + +
Sbjct: 14 RTARGT---AVVLGNTPAG----DKIQYCNGTSVYTVPVG-------------------- 46
Query: 408 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS 467
++ + SHQ + +G +G R+W+ + +
Sbjct: 47 SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTT-------QTTHILKTTIP 99
Query: 468 GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 527
V + + + + F + S R
Sbjct: 100 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRP 159
Query: 528 RRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM 587
R + T A P + P G D V +
Sbjct: 160 FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV---LY 216
Query: 588 DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRI 647
+ H+ S + L P +IA SA D +W++ +
Sbjct: 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA-SASADKTIKIWNVATLKVEKT 275
Query: 648 YEI-SRFRLVDGKFSPDGASIILSDDVGQLYILN 680
+ +R +++ G + +N
Sbjct: 276 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.0 bits (112), Expect = 5e-06
Identities = 41/298 (13%), Positives = 81/298 (27%), Gaps = 65/298 (21%)
Query: 257 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIW--SMETAYCLASCRGHEGD 314
V + + + H + A SG Y +G V+IW + T + G
Sbjct: 45 VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGP 104
Query: 315 ITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 374
+ D++ S + +A+ S A + +P ++++S
Sbjct: 105 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS 164
Query: 375 SSDDGTCRIW-----------------------------DARYSQFSPRIYIPRPSDAVA 405
SDD T I+ A +
Sbjct: 165 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 224
Query: 406 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 465
G S S +F ++ +GT + S+D ++WN + + I V
Sbjct: 225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV------ATLKVEKTIPV 278
Query: 466 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 523
+ E+ + ++ +V+ S +G
Sbjct: 279 GTRIEDQQLGIIWTK----------------------------QALVSISANGFINFV 308
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 81.4 bits (199), Expect = 9e-17
Identities = 38/348 (10%), Positives = 85/348 (24%), Gaps = 27/348 (7%)
Query: 310 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR---GHTAAVTAIAFSPRP 366
+ I+D+ + + +L+ S D + V++ L + + F
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68
Query: 367 GSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 426
+ + S + ++ R +
Sbjct: 69 D---LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125
Query: 427 FNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 486
+ N N + N ++ + + V + + C +
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185
Query: 487 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVP 546
+S + + S DG + + +++ ++
Sbjct: 186 TI-EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244
Query: 547 PPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT 606
P N I +S ++F+ A D I WN + +
Sbjct: 245 LKDTNLAYPV--------------NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290
Query: 607 GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW----EGIPIRIYEI 650
E + V+ + + I A D E IY I
Sbjct: 291 KFNEDS-VVKIAC-SDNILCLATSDDTFKTNAAIDQTIELNASSIYII 336
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.8 bits (161), Expect = 6e-12
Identities = 36/333 (10%), Positives = 82/333 (24%), Gaps = 29/333 (8%)
Query: 347 ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAG 406
+ + + ++ I P LL +S DG+ ++
Sbjct: 4 VQIEQAPKDYISDIKIIPSKS---LLLITSWDGSLTVYKFD-----------------IQ 43
Query: 407 RNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL 466
+ H + CC F N + + + + + N+E ++
Sbjct: 44 AKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLG 103
Query: 467 SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 526
+ + + D + ++ V
Sbjct: 104 ICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL 163
Query: 527 SRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI 586
+ +W + + + + R L S+D R +
Sbjct: 164 IVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF 223
Query: 587 MDCRICVWNAADGSLVH-----SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 641
D ++ + T ++ P + +AG DG W++
Sbjct: 224 DDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQT 282
Query: 642 GIPIRIYEISRFRLVDGKFSPDGASIIL--SDD 672
I+ + K + + L SDD
Sbjct: 283 RKKIKNFA-KFNEDSVVKIACSDNILCLATSDD 314
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.5 bits (129), Expect = 5e-08
Identities = 19/147 (12%), Positives = 36/147 (24%), Gaps = 22/147 (14%)
Query: 269 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---------------YCLASCRGHEG 313
A+ + S D V + +
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 314 DITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLL 373
+ + S + + +A +D II W L I + + + L
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDN---ILC 308
Query: 374 SSSDDGTCRIWDARYSQF---SPRIYI 397
++ D T + A + IYI
Sbjct: 309 LATSDDTFKTNAAIDQTIELNASSIYI 335
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.6 bits (119), Expect = 8e-07
Identities = 11/111 (9%), Positives = 41/111 (36%), Gaps = 5/111 (4%)
Query: 256 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 315
+ + + V F +++ T D ++ W+++T + + +
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NED 295
Query: 316 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRP 366
+ + ++ ++ ++ A++D + D + + +++ I P
Sbjct: 296 SVVKIACSDNILCLATSDDTFKTNAAID----QTIELNASSIYIIFDYENP 342
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 81.4 bits (199), Expect = 2e-16
Identities = 40/390 (10%), Positives = 88/390 (22%), Gaps = 56/390 (14%)
Query: 269 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET--AYCLASCRGHEGDITDLAVSSNNAL 326
+ C +++ + ++ V I+ + + H G +T + + ++
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 327 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
+ + D VW L L A P S I
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF-AVGSGSRVISICYF 124
Query: 387 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV--TGSSDTLAR 444
+ + S + + A + + + + R
Sbjct: 125 EQENDWWVCKHIKK------PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER 178
Query: 445 VWNACKPNTDDSDQPNHEIDVLSGHENDVN-------YVQFSGCAVASRFSLADSSKEDS 497
+ + E G + V S + +
Sbjct: 179 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 238
Query: 498 TPKFKNSWFCH-----DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 552
++V D +++ S + + L V
Sbjct: 239 LASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAG-----KLSFGGRLDV------- 286
Query: 553 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTEST 612
P+ + + RF +D + +A + H S
Sbjct: 287 --------------PKQSSQRGLTARERFQN---LDKKASSEGSAAAG-AGLDSLHKNSV 328
Query: 613 YVLDVHP---FNPRIAMSAGYDGKTIVWDI 639
+ V + G DG +WD+
Sbjct: 329 SQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 76.8 bits (187), Expect = 4e-15
Identities = 37/330 (11%), Positives = 88/330 (26%), Gaps = 67/330 (20%)
Query: 315 ITDLAVSSNNALVASASNDCIIRVWRLPDG--LPISVLRGHTAAVTAIAFSPRPGSVYQL 372
I+ A + + +A N+ + ++ + + L+ H VT + ++P ++
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN---RI 66
Query: 373 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 432
++ D +W + + P + I R + A AP+
Sbjct: 67 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI------- 119
Query: 433 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 492
+ + N + + + V + +
Sbjct: 120 -----------SICYFEQENDWWVCKHIKKP-----IRSTVLSLDW-------------- 149
Query: 493 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 552
+ S D I+ + + A +
Sbjct: 150 ------------HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 197
Query: 553 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTEST 612
G V+ + +S + V D +C+ +A V +L T
Sbjct: 198 SSSCGW-----------VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPL 246
Query: 613 YVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 642
+ + +A AG+D +++
Sbjct: 247 LAVTFITESSLVA--AGHDCFPVLFTYDSA 274
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.3 bits (165), Expect = 2e-12
Identities = 20/133 (15%), Positives = 36/133 (27%), Gaps = 3/133 (2%)
Query: 256 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 315
K + + + F V G D +++ ++A S G
Sbjct: 229 DADKKMAVATLASETLPLLAVTFITESSLVAAGHDCF-PVLFTYDSAAGKLSFGGRLDVP 287
Query: 316 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP-RPGSVYQLLS 374
+ A + D + H +V+ I+ Q +
Sbjct: 288 KQSSQRGLTARERFQNLDKKASSEGSAAA-GAGLDSLHKNSVSQISVLSGGKAKCSQFCT 346
Query: 375 SSDDGTCRIWDAR 387
+ DG IWD R
Sbjct: 347 TGMDGGMSIWDVR 359
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.4 bits (121), Expect = 6e-07
Identities = 23/196 (11%), Positives = 52/196 (26%), Gaps = 29/196 (14%)
Query: 256 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 315
+ + + V+ F +G V S D V + + +A+ +
Sbjct: 187 KMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPL 246
Query: 316 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 375
+ + ++LVA+ DC ++ G +
Sbjct: 247 LAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQR----------GL 295
Query: 376 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG---- 431
+ + D + S G A + + + + + G
Sbjct: 296 TARERFQNLDKKAS--------------SEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC 341
Query: 432 TVFVTGSSDTLARVWN 447
+ F T D +W+
Sbjct: 342 SQFCTTGMDGGMSIWD 357
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 78.8 bits (192), Expect = 4e-16
Identities = 34/296 (11%), Positives = 71/296 (23%), Gaps = 16/296 (5%)
Query: 346 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 405
+ + GH +TA+ +P L+S S DG W + I ++ A
Sbjct: 5 VLKTISGHNKGITALTVNP-------LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKA 57
Query: 406 GR-NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 464
+ + + T + +
Sbjct: 58 QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV 117
Query: 465 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWI 524
L+ + V+ Q + K + + + +I
Sbjct: 118 RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 177
Query: 525 PRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 584
Y L+ R I P ++ V
Sbjct: 178 AAGDVMG-----KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT 232
Query: 585 AIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639
+D I +++ ++ +L H + L + S+G D W++
Sbjct: 233 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLV-SSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.6 bits (142), Expect = 8e-10
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 5/90 (5%)
Query: 297 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL-PISVLRGHTA 355
+ + + LVA+ S D I ++ + + I L H
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259
Query: 356 AVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 385
V + + L+SS D + W+
Sbjct: 260 GVNNLLWETPS----TLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.5 bits (134), Expect = 9e-09
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 256 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY-CLASCRGHEGD 314
+ I + + V TGS D + I+S++ + + H+
Sbjct: 201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG 260
Query: 315 ITDLAVSSNNALVASASNDCIIRVWR 340
+ +L + + LV S+ D I+ W
Sbjct: 261 VNNLLWETPSTLV-SSGADACIKRWN 285
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 76.6 bits (186), Expect = 2e-15
Identities = 49/338 (14%), Positives = 87/338 (25%), Gaps = 46/338 (13%)
Query: 304 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAF 362
GH IT L+ S++ + SA + I W + G+ V H +T I
Sbjct: 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Query: 363 SPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 422
+ + L + S D ++ A S + S Q
Sbjct: 64 TSK----GDLFTVSWDDHLKVVPAGGSGVDSSKAVAN-----------------KLSSQP 102
Query: 423 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 482
A +A+G + V +A + S + V
Sbjct: 103 LGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHV 162
Query: 483 VASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 542
+ K P S +N + IP S ++ + A
Sbjct: 163 YKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF 222
Query: 543 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV 602
+ P N + +D + VWN S
Sbjct: 223 HTAKVACVSWSPD-----------------------NVRLATGSLDNSVIVWNMNKPSDH 259
Query: 603 HSLTGHTESTYVLDVHPFNP-RIAMSAGYDGKTIVWDI 639
+ + ++ + +SAG D W++
Sbjct: 260 PIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 67.7 bits (163), Expect = 2e-12
Identities = 35/334 (10%), Positives = 80/334 (23%), Gaps = 43/334 (12%)
Query: 263 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVS 321
+ GH A+ G+ + + + + W + T H IT + +
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
Query: 322 SNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 381
S L + +D + V G+ S + + + + +++
Sbjct: 65 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA-VAACYKHIA 123
Query: 382 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDT 441
+ ++ + + + +A A + V + T
Sbjct: 124 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT 183
Query: 442 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 501
N ++ + + ++ +
Sbjct: 184 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH--------------TAKVAC 229
Query: 502 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 561
+ + + T S D S I+W HP
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI---------------------------I 262
Query: 562 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 595
V L+ +++A D I WN
Sbjct: 263 IKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.9 bits (135), Expect = 6e-09
Identities = 34/332 (10%), Positives = 64/332 (19%), Gaps = 46/332 (13%)
Query: 349 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN 408
V GH A+TA++ S G L S+ +G WD
Sbjct: 7 VRYGHNKAITALSSSA-DGKT--LFSADAEGHINSWDIS-------------------TG 44
Query: 409 MAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 468
++ + I + G +F D L V N G
Sbjct: 45 ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 104
Query: 469 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 528
+ V S + S + +
Sbjct: 105 LAVSADGDIAVAA---------------CYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ 149
Query: 529 RSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD 588
+ + + P +
Sbjct: 150 FVAVGGQDSKVHVY-------KLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK 202
Query: 589 CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI--WEGIPIR 646
+ + + + D IVW++ PI
Sbjct: 203 VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII 262
Query: 647 IYEISRFRLVDGKFSPDGASIILSDDVGQLYI 678
I V+ + +I+ + +
Sbjct: 263 IKGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 294
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.5 bits (121), Expect = 4e-07
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 256 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA--YCLASCRGHEG 313
++ + H V C + + TGS D V +W+M + + H
Sbjct: 210 NNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAM 269
Query: 314 DITDLAVSSNNALVASASNDCIIRVWRLP 342
+ + N + SA D I+ W +P
Sbjct: 270 SSVNSVIWLNETTIVSAGQDSNIKFWNVP 298
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.8 bits (114), Expect = 3e-06
Identities = 19/177 (10%), Positives = 45/177 (25%), Gaps = 5/177 (2%)
Query: 211 HMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHR 270
+ + + + A + + + K S
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182
Query: 271 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASA 330
+V + + + S H + ++ S +N +A+
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242
Query: 331 SNDCIIRVWRLPDG--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 385
S D + VW + PI + H + ++S+ D + W+
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET---TIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.7 bits (98), Expect = 3e-04
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 599 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIY 648
GS+ GH ++ L + SA +G WDI GI R++
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLF-SADAEGHINSWDISTGISNRVF 50
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.6 bits (90), Expect = 0.003
Identities = 33/238 (13%), Positives = 62/238 (26%), Gaps = 19/238 (7%)
Query: 211 HMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHR 270
H++ V A S A +
Sbjct: 77 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS 136
Query: 271 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC-RGHEGDITDLAVSSNNALVAS 329
C ++V G D V ++ + A H +IT +A S+N A + +
Sbjct: 137 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA 196
Query: 330 ASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 389
+ + + + ++ T +A +L + S D + +W+
Sbjct: 197 TDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 256
Query: 390 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
P I G + N T V+ D+ + WN
Sbjct: 257 SDHPIIIK------------------GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 73.2 bits (178), Expect = 5e-14
Identities = 28/364 (7%), Positives = 75/364 (20%), Gaps = 42/364 (11%)
Query: 278 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD-ITDLAVSSNNA-LVASASNDCI 335
Y+I + + + + + SC + ++ +N ++
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 336 IRVWRLPDGLPISVLR------GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 389
I L ++ + A SP VY ++ +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY---ATVNPTQRLNDHYVVK 120
Query: 390 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNAC 449
++ P Q++ +G+++V G V
Sbjct: 121 PPRLEVFSTADGLEAKPVRT------FPMPRQVYLMRAADDGSLYVAGPDIYKMDVKT-- 172
Query: 450 KPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 509
L N + + + +
Sbjct: 173 ----------GKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ 221
Query: 510 NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQ------------PPRG 557
+ T + ++ ++H + + P P +
Sbjct: 222 DPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQ 281
Query: 558 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 617
+ + + + + V+N V ++
Sbjct: 282 RKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTP 341
Query: 618 HPFN 621
F
Sbjct: 342 QVFI 345
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 65.5 bits (158), Expect = 2e-11
Identities = 26/344 (7%), Positives = 73/344 (21%), Gaps = 33/344 (9%)
Query: 318 LAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSS 376
A+ + + + + + V + +P + Y + ++
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAY--VLNN 59
Query: 377 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 436
G D + + + SS G ++ A + +G
Sbjct: 60 HYGDIYGIDLDTCKNT--------------FHANLSSVPGEVGRSMYSFAISPDGKEVYA 105
Query: 437 GSSDTLARVWNACKPNTDDS---DQPNHEIDVLSGHE--NDVNYVQFSGCAVASRFSLAD 491
+ T + E + V ++ +
Sbjct: 106 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDI 165
Query: 492 SSKEDSTPKFKNSWFCHDNI--VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 549
+ T K+ + + + D R + K P
Sbjct: 166 YKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 225
Query: 550 MPPQ-------PPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV 602
G + + + R+ ++ L+
Sbjct: 226 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLI 285
Query: 603 HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 646
+ + Y + ++ G V++ ++
Sbjct: 286 KAA-NLDHTYYCVAFDKKGDKLY-LGGTFNDLAVFNPDTLEKVK 327
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.7 bits (104), Expect = 6e-05
Identities = 33/311 (10%), Positives = 63/311 (20%), Gaps = 61/311 (19%)
Query: 187 GRGSFSLLSYDRDKGQNEIDHPPA-----HMRWPHMYADQVRGLGLREIGGGFTRHHRAP 241
+ D D +N + R + +A G + R +
Sbjct: 58 NNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY 117
Query: 242 SIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME- 300
++ + + R VY G + G D + + + +
Sbjct: 118 VVKPPRLEVFSTADG--LEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKY 175
Query: 301 ---------------TAYCLASCRGHEGDITDL------AVSSNNALVASASNDCIIRVW 339
L + A+A
Sbjct: 176 TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 235
Query: 340 RLPDGLPISVLRG-HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIP 398
L G + T SP+ +D + +
Sbjct: 236 DLKTGKTHTQEFADLTELYFTGLRSPK----DPNQIYGVLNRLAKYDLKQRKLIKAA--- 288
Query: 399 RPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 458
H +C AF+ G G + V+N D+ +
Sbjct: 289 ------------------NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP------DTLE 324
Query: 459 PNHEIDVLSGH 469
I + G
Sbjct: 325 KVKNIKLPGGD 335
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.0 bits (172), Expect = 1e-13
Identities = 61/381 (16%), Positives = 114/381 (29%), Gaps = 90/381 (23%)
Query: 258 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITD 317
+Q I VYC +D + +++G D +KIW T C GH G +
Sbjct: 3 HSLQRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL- 59
Query: 318 LAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 377
+ + ++ + S+D +RVW + G ++ L H AV + F+
Sbjct: 60 -CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS-----K 113
Query: 378 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 437
D + +WD + H+ + + V+
Sbjct: 114 DRSIAVWDMASPTDITLRRVLVG-------------------HRAAVNVVDFDDKYIVSA 154
Query: 438 SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 497
S D +VWN + L+GH+ + +Q+
Sbjct: 155 SGDRTIKVWNT---------STCEFVRTLNGHKRGIACLQYRDR---------------- 189
Query: 498 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 557
+V+ S D + +W L+V
Sbjct: 190 ------------LVVSGSSDNTIRLWDIECGA------------CLRVLEGHEELVRCIR 225
Query: 558 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 617
+RI+ + VW L + A + +L H+ + L
Sbjct: 226 FDNKRIVSGAYDGKIKVWDLVA----------ALDPRAPAGTLCLRTLVEHSGRVFRLQ- 274
Query: 618 HPFNPRIAMSAGYDGKTIVWD 638
F+ +S+ +D ++WD
Sbjct: 275 --FDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (136), Expect = 6e-09
Identities = 41/276 (14%), Positives = 83/276 (30%), Gaps = 32/276 (11%)
Query: 419 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 478
S ++C ++ V+G D ++W+ +L+GH V +Q+
Sbjct: 15 SKGVYCLQYD--DQKIVSGLRDNTIKIWDK---------NTLECKRILTGHTGSVLCLQY 63
Query: 479 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 538
+ + S DS+ + + + A W
Sbjct: 64 DERVIITGSS--DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121
Query: 539 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 598
A + + + V D++++++A D I VWN +
Sbjct: 122 MASPTDITLRRVLVGHRA--------------AVNVVDFDDKYIVSASGDRTIKVWNTST 167
Query: 599 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG 658
V +L GH + R+ +S D +WDI G +R+ E +
Sbjct: 168 CEFVRTLNGHKRGIAC---LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVR 222
Query: 659 KFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQ 694
D I+ G++ + + +
Sbjct: 223 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 258
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (133), Expect = 1e-08
Identities = 47/306 (15%), Positives = 83/306 (27%), Gaps = 94/306 (30%)
Query: 257 VQKMQNIKRVRGHRNAVYCAIFDRS----------------------------------- 281
++ + + GH +V C +D
Sbjct: 42 KNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 101
Query: 282 ---GRYVITGSDDRLVKIWSMETAYCL-ASCRGHEGDITDLAVSSNNALVASASNDCIIR 337
++T S DR + +W M + + V ++ + SAS D I+
Sbjct: 102 RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK 161
Query: 338 VWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 397
VW + L GH + + + R ++S S D T R+WD
Sbjct: 162 VWNTSTCEFVRTLNGHKRGIACLQYRDR-----LVVSGSSDNTIRLWDIECGAC------ 210
Query: 398 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 457
+ H+ + V+G+ D +VW+ +
Sbjct: 211 ----------------LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAP 254
Query: 458 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD 517
+ L H V +QF IV+ S D
Sbjct: 255 AGTLCLRTLVEHSGRVFRLQFDE----------------------------FQIVSSSHD 286
Query: 518 GSAIIW 523
+ +IW
Sbjct: 287 DTILIW 292
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 67.5 bits (163), Expect = 4e-12
Identities = 24/332 (7%), Positives = 67/332 (20%), Gaps = 23/332 (6%)
Query: 283 RYVITGSDDRLVKIWSMETAYCLASCRGHE--GDITDLAVSSNNA-LVASASNDCIIRVW 339
Y++ + + + E + V+ A+ + +
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 340 RLPDGLPISVLRGHTA-----AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPR 394
L G + + T ++ A SP ++ S
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 395 IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTD 454
A + +++ + + G+ + +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 455 DSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC 514
D S + D + + + +
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTA--------RKDIDPADPTAYRTGLLTMDLETGEMAM 233
Query: 515 SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 574
++ + + K + L+ + +P P +
Sbjct: 234 REVRIMDVFYFSTAVNPAKTRAFGAYNVLES-------FDLEKNASIKRVPLPHSYYSVN 286
Query: 575 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLT 606
S D V + ++A +
Sbjct: 287 VSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 57.5 bits (137), Expect = 5e-09
Identities = 31/320 (9%), Positives = 74/320 (23%), Gaps = 20/320 (6%)
Query: 326 LVASASNDCIIRVWRLPDGLPISVLRGHTA--AVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
+ + + + V V+ A +P Y + + +
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAY--ATVNKSESLVK 60
Query: 384 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 443
D + RI + P + V A S P + + T
Sbjct: 61 IDLVTGETLGRIDLSTPEERVKSLFGAALS---PDGKTLAIYESPVRLELTHFEVQPTRV 117
Query: 444 RVWNACKPNTDDSDQPNHEIDVLSGHEND----VNYVQFSGCAVASRFSLADSSKEDSTP 499
+++A + + + +I +L+ + + + D +
Sbjct: 118 ALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEA 177
Query: 500 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 559
+ G +R+ A L G
Sbjct: 178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET-------GE 230
Query: 560 RQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 619
V +++ A + ++ + + + S Y ++V
Sbjct: 231 MAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVST 289
Query: 620 FNPRIAMSAGYDGKTIVWDI 639
+ G G +D
Sbjct: 290 DGSTVW-LGGALGDLAAYDA 308
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 53.3 bits (126), Expect = 1e-07
Identities = 34/330 (10%), Positives = 74/330 (22%), Gaps = 37/330 (11%)
Query: 372 LLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 431
+L+ + + D AV + P G
Sbjct: 4 ILAPARPDKLVVIDTE-------------KMAVDKVITIADAGPTPMV-----PMVAPGG 45
Query: 432 -TVFVTGSSDTLARVWNA--------CKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 482
+ T + + +T + + LS + +
Sbjct: 46 RIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRL 105
Query: 483 VASRFSLADSSK-----EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 537
+ F + + E + + ++ +RDGS + + R A
Sbjct: 106 ELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGT 165
Query: 538 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMI--VWSLDNRFVLAAIMDCRICVWN 595
P + + D + +
Sbjct: 166 LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225
Query: 596 AADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRL 655
G + + Y NP + G +D+ + I+ +
Sbjct: 226 LETGEMAMREVRIMDVFYF--STAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPH-SY 282
Query: 656 VDGKFSPDGASIILSDDVGQLYILNTGQGE 685
S DG+++ L +G L + E
Sbjct: 283 YSVNVSTDGSTVWLGGALGDLAAYDAETLE 312
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.7 bits (109), Expect = 1e-05
Identities = 11/163 (6%), Positives = 35/163 (21%), Gaps = 5/163 (3%)
Query: 206 DHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKR 265
P + A + + F + TM + +
Sbjct: 174 SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM 233
Query: 266 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA 325
V+ + +++ + +E + + VS++ +
Sbjct: 234 REVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGS 292
Query: 326 LVASASNDCIIRVWRLPDGLPISVLR----GHTAAVTAIAFSP 364
V + + + + + F+
Sbjct: 293 TVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTR 335
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 61.5 bits (148), Expect = 4e-10
Identities = 55/421 (13%), Positives = 109/421 (25%), Gaps = 70/421 (16%)
Query: 279 DRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRV 338
D + +T D + + ++ + + +S++ + D I +
Sbjct: 29 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDM 87
Query: 339 WRLPDGLPISVLR-----GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSP 393
L P V + ++ + I D P
Sbjct: 88 IDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTI--AGAYWPPQFAIMDG--ETLEP 143
Query: 394 RIYIPRPSDAVAGRNMAPSSS----AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNAC 449
+ + V + P H F G V + D +
Sbjct: 144 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD-----IDNL 198
Query: 450 KPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW---- 505
+ + + S H + S S K +
Sbjct: 199 TVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN 258
Query: 506 FCHDN----IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 561
F H T +I I ++HP+ A W + L+ GG
Sbjct: 259 FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA-WKKVAELQGQ----------GGGSL 307
Query: 562 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLD----- 616
I P+ ++ V D F A + + V++ + + + E + +
Sbjct: 308 FIKTHPKSSHLYV---DTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRV 364
Query: 617 VHP-FNPRIAMSAGYDGKTIVWDIWEGIP----IRIY---------EISRFRLV--DGKF 660
V P +N G + + +W G + + + RL+ GKF
Sbjct: 365 VQPEYNK--------RGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTGKF 416
Query: 661 S 661
+
Sbjct: 417 N 417
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 60.7 bits (146), Expect = 7e-10
Identities = 44/370 (11%), Positives = 92/370 (24%), Gaps = 33/370 (8%)
Query: 318 LAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 377
+ N + + I + + V+ AV S +
Sbjct: 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLL---VIGR 81
Query: 378 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 437
D + D + + I +A R++ S G + A+ + G
Sbjct: 82 DARIDMIDLWAKEPTKVAEIKIGIEA---RSVESSKFKGYEDRYTIAGAYWPPQFAIMDG 138
Query: 438 SSDTLARVWNACKPNTDDSDQP--NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 495
+ ++ + D +++ HE+ V + D
Sbjct: 139 ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL 198
Query: 496 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 555
T + F D + + + K A + P
Sbjct: 199 TVT-SIGAAPFLAD--GGWDSSHRYFMT---AANNSNKVAVIDSKDRRLSALVDVGKTPH 252
Query: 556 RGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 615
G + P V D L + V L G + +
Sbjct: 253 PGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY---AWKKVAELQGQGGGSLFI 309
Query: 616 DVHPFNPRIAMSA-----GYDGKTI-VWDIWEGIPIR----IYEISRF-----RLVDGKF 660
HP + + + +++ V+D+ I E + R+V ++
Sbjct: 310 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY 369
Query: 661 SPDGASIILS 670
+ G + S
Sbjct: 370 NKRGDEVWFS 379
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 59.8 bits (143), Expect = 1e-09
Identities = 36/331 (10%), Positives = 73/331 (22%), Gaps = 27/331 (8%)
Query: 328 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY-------QLLSSSDDGT 380
A + V G I ++ G + + + ++
Sbjct: 22 AHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDY 79
Query: 381 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD 440
++D + I +P P G + +
Sbjct: 80 VEVFDPVTLLPTADIELPDA----------PRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 129
Query: 441 TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVASRFSLADSSKEDST 498
+ V K D P+ + G F + + T
Sbjct: 130 AVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT 186
Query: 499 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG- 557
F N S+ ++W + + H A L + G
Sbjct: 187 EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW 246
Query: 558 --GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 615
G Q++ + + + V +A G + E +
Sbjct: 247 RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSIN 306
Query: 616 DVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 646
P + + D + D G +R
Sbjct: 307 VSQDEKPLLYALSTGDKTLYIHDAESGEELR 337
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.9 bits (107), Expect = 3e-05
Identities = 14/206 (6%), Positives = 42/206 (20%), Gaps = 31/206 (15%)
Query: 211 HMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR--- 267
+ + + ++ + AP + + + +
Sbjct: 128 APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE 187
Query: 268 ----GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET--AYCLASCRGHEGDITDLA-- 319
+ + + ++ + + + + A L +
Sbjct: 188 VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 247
Query: 320 ------------------VSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 361
+ + + V G ++ + +I
Sbjct: 248 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSIN 306
Query: 362 FSPRPGSVYQLLSSSDDGTCRIWDAR 387
S S+ D T I DA
Sbjct: 307 VSQD-EKPLLYALSTGDKTLYIHDAE 331
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 57.2 bits (136), Expect = 9e-09
Identities = 38/343 (11%), Positives = 80/343 (23%), Gaps = 35/343 (10%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDD--RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA 325
+ + + I+ T + G++ + V N
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG-KAEKFEENLGNVFAMGVDRNGK 98
Query: 326 LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 385
A++ I L G P + R A +T S + T
Sbjct: 99 FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 158
Query: 386 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 445
+ + ++ + AF+A+ S +L
Sbjct: 159 QAIHVYDMEGRKIFAAT--------------TENSHDYAPAFDADSKNLYYLSYRSLDPS 204
Query: 446 WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 505
+ + S + + V+ N + S S A + K +
Sbjct: 205 PDRV--VLNFSFEVVSKPFVIPLIPGSPNPTKLVP---RSMTSEAGEYDLNDMYKRSSPI 259
Query: 506 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA---YHLKVPPPPMPPQPPRGGPRQR 562
+ I I AA + A L ++
Sbjct: 260 NVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK----------TRK 309
Query: 563 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL 605
+ + + S D + V+ D +I + ++
Sbjct: 310 VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 55.6 bits (132), Expect = 3e-08
Identities = 39/395 (9%), Positives = 87/395 (22%), Gaps = 59/395 (14%)
Query: 322 SNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 381
+ L+A S + + + V + + + + + +
Sbjct: 13 LDGDLIAFVSRG-QAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAF-IHGTREGDFL 68
Query: 382 RIWDA------RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV 435
I+D ++ + ++ +A +
Sbjct: 69 GIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA 128
Query: 436 TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 495
+ T++ + + H D+ + + E
Sbjct: 129 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-----------TTE 177
Query: 496 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 555
+S N+ S + L
Sbjct: 178 NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL------------ 225
Query: 556 RGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC----RICVWNAADGSLVHSLTGHTES 611
P N + A D + D + S
Sbjct: 226 ----------IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS 275
Query: 612 TYVLDVHPFNPRIAM--SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIIL 669
+ V A A G + +D+ + L D + S D ++++
Sbjct: 276 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN----NLTDLRLSADRKTVMV 331
Query: 670 SDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLV 704
D G++Y + E ++ D RPLV
Sbjct: 332 RKDDGKIYTFPLEKPED------ERTVETDKRPLV 360
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 54.1 bits (128), Expect = 7e-08
Identities = 15/256 (5%), Positives = 39/256 (15%), Gaps = 41/256 (16%)
Query: 207 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 266
+ + + Y + + + I
Sbjct: 115 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 174
Query: 267 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC-------LASCRGHEGDITDLA 319
+ Y FD + + S L G
Sbjct: 175 TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 234
Query: 320 VSSNNALVASAS-------NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL 372
+ + + D I L +
Sbjct: 235 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEF---AAYY 291
Query: 373 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 432
+ + G +D + + + + +A+
Sbjct: 292 QGAPEKGVLLKYDVK------------------------TRKVTEVKNNLTDLRLSADRK 327
Query: 433 VFVTGSSDTLARVWNA 448
+ D +
Sbjct: 328 TVMVRKDDGKIYTFPL 343
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 56.3 bits (135), Expect = 2e-08
Identities = 51/419 (12%), Positives = 102/419 (24%), Gaps = 57/419 (13%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 327
R +D + +T D + + T + +S++ +
Sbjct: 18 EDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYL 76
Query: 328 ASASNDCIIRVWRLPDG-----LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 382
D + + L I + + T+ +
Sbjct: 77 FVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI--AGAYWPPQYV 134
Query: 383 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 442
I D + P + R M ++ + F+ +T
Sbjct: 135 IMDGETLE---------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET- 184
Query: 443 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 502
++ + D + +D G + R+ + ++ K
Sbjct: 185 GKILLV---DYTDLNNLKTTEISAERFLHDG------GLDGSHRYFITAANAR---NKLV 232
Query: 503 NSWFCHDNIVTCSRDGSAIIWIPRSRR-SHPKAARWTQAYHL---KVPPPPMPPQ--PPR 556
+V G R HP H+ V P+ P
Sbjct: 233 VIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDN 292
Query: 557 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLD 616
P G ++ + + N + + + S
Sbjct: 293 AWKILDSFPALGGGSLFIKTHPNS------QYLYVDATLNPEAEISGS------------ 334
Query: 617 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQ 675
V F+ + G D + I E I E R+V G+F+ DG + S G+
Sbjct: 335 VAVFDIKAMTGDGSDPEFKTLPIAEW--AGITEGQP-RVVQGEFNKDGTEVWFSVWNGK 390
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 42.5 bits (99), Expect = 4e-04
Identities = 15/131 (11%), Positives = 39/131 (29%), Gaps = 7/131 (5%)
Query: 562 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL-----VHSLTGHTESTYVLD 616
+L T V++ S R++ D ++ + + + +
Sbjct: 56 TVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKM 115
Query: 617 VHPFNPRIAMSAGYDGKTIVWD--IWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVG 674
+ A + + ++ D E I+ + + P A+I+ S
Sbjct: 116 EGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP 175
Query: 675 QLYILNTGQGE 685
+ + G+
Sbjct: 176 EFIVNVKETGK 186
|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: P300/CAF histone acetyltransferase bromodomain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (108), Expect = 3e-06
Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 4/113 (3%)
Query: 1663 EQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQS 1722
++PR + ++L S + Q Q + + + ++ + P+ L +
Sbjct: 6 KEPR----DPDQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSE 61
Query: 1723 RLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSLK 1775
RL+N YY + D+ + +N + Y ++ L +
Sbjct: 62 RLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIKEAG 114
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 48.3 bits (113), Expect = 4e-06
Identities = 35/326 (10%), Positives = 70/326 (21%), Gaps = 27/326 (8%)
Query: 286 ITGSDDRLVKIWSMETAYCLASCR--GHEGDITDLAVSSN-NALVASASNDCIIRVWRLP 342
I + + + +W++ L + G + + VS + L + + +R+
Sbjct: 8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67
Query: 343 DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 402
A+T A S PGS+ + + + S
Sbjct: 68 PD---------DGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV 118
Query: 403 AVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHE 462
V H N + D
Sbjct: 119 GVVDVVE-----GLDGCHSANISPDNR-----TLWVPALKQDRICLFTVSDDGHLVAQDP 168
Query: 463 IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAII 522
+V + ++ F + +S D +
Sbjct: 169 AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD 228
Query: 523 WIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI--LPTPRGVNMIVWSLDNR 580
+ R A + G + PT +
Sbjct: 229 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGK 288
Query: 581 FVLAAIMDC-RICVW--NAADGSLVH 603
+++AA I V+ G L
Sbjct: 289 YLIAAGQKSHHISVYEIVGEQGLLHE 314
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 45.6 bits (106), Expect = 3e-05
Identities = 33/323 (10%), Positives = 67/323 (20%), Gaps = 49/323 (15%)
Query: 286 ITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 345
I S+ + + + + A+
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGSN-------------------------------- 33
Query: 346 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 405
SP VY ++++ I D + + VA
Sbjct: 34 -----------PMGAVISPDGTKVY--VANAHSNDVSIIDTATNNVIATVPAGSSPQGVA 80
Query: 406 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 465
+ + TV T + N + V
Sbjct: 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTV 140
Query: 466 LSGHENDVNYVQFSGC--AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 523
+ + + D +K S D + D +
Sbjct: 141 SVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA 200
Query: 524 IPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVL 583
P +P+ + K RI P I + D + V
Sbjct: 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI-PVGPDPAGIAVTPDGKKVY 259
Query: 584 AAI-MDCRICVWNAADGSLVHSL 605
A+ + V + A ++ ++
Sbjct: 260 VALSFCNTVSVIDTATNTITATM 282
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 44.5 bits (103), Expect = 8e-05
Identities = 25/295 (8%), Positives = 70/295 (23%), Gaps = 45/295 (15%)
Query: 368 SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 427
S + +++S+ + D ++ + I G
Sbjct: 1 STFAYIANSESDNISVIDVTSNKVTATI------------------PVGSNPMGA---VI 39
Query: 428 NANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 486
+ +GT V+V + + + N + ++ + + +
Sbjct: 40 SPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLS 99
Query: 487 FSLADSSKEDSTPKFKNS-----------------WFCHDNIVTCSRDGSAIIWI----- 524
S+ T K S V + + I +
Sbjct: 100 VIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS 159
Query: 525 PRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 584
P+ P + A + + ++ P G+ +
Sbjct: 160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNV 219
Query: 585 AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639
+ + + + + + + V P ++ ++ + V D
Sbjct: 220 DKYFNTVSMIDTGTNKITARIPVGPDPAGI-AVTPDGKKVYVALSFCNTVSVIDT 273
|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (98), Expect = 4e-05
Identities = 13/94 (13%), Positives = 33/94 (35%)
Query: 1673 NKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGL 1732
++L + L + + + S+ ++ P+ L + RL + YY
Sbjct: 1 DQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTR 60
Query: 1733 EAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1766
+ D+ +++N Y +++ L
Sbjct: 61 KLFVADLQRVIANCREYNPPDSEYCRCASALEKF 94
|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (93), Expect = 4e-04
Identities = 11/70 (15%), Positives = 28/70 (40%)
Query: 1706 NFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSD 1765
++ P+ L ++ + Y E + + +++ N+ +Y G L+ + + D
Sbjct: 58 DYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLD 117
Query: 1766 LVTRTLSSLK 1775
L L +
Sbjct: 118 LCDEKLKEKE 127
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.3 bits (98), Expect = 4e-04
Identities = 30/369 (8%), Positives = 68/369 (18%), Gaps = 66/369 (17%)
Query: 352 GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 411
+ + L + GT W + ++
Sbjct: 17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAG--CGVTLGHSLGAFLSLAVAGH 74
Query: 412 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDS-DQPNHEIDVLSGHE 470
S S + + G V++ + P+ +
Sbjct: 75 SGS--------DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV 126
Query: 471 NDVNYVQFSGCAVASRFSLADSSKED-STPKFKNSWFCHD----------NIVTCSRDGS 519
+ + S C + F + ++ S S
Sbjct: 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPAS 186
Query: 520 AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 579
+ + +
Sbjct: 187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAA-----------------------QANYPG 223
Query: 580 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639
V A AA ++ ++ G+ + ++ ++ + I+
Sbjct: 224 MLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQM-VAKLKNTDGIMILT 282
Query: 640 WEGIPIRIYEISRFRLVDGK------------------FSPDGASIIL--SDDVGQLYIL 679
E + V + DGAS S L I
Sbjct: 283 VEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIY 342
Query: 680 NTGQGESQK 688
+ + Q
Sbjct: 343 DAASDQDQS 351
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1784 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 100.0 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.98 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.96 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.95 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.94 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.94 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.94 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.91 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.9 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.9 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.89 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.87 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.86 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.85 | |
| d1e6ia_ | 111 | GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.81 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.81 | |
| d1eqfa2 | 128 | TAFII250 double bromodomain module {Human (Homo sa | 99.81 | |
| d3d7ca1 | 102 | GCN5 {Human (Homo sapiens) [TaxId: 9606]} | 99.81 | |
| d1wuma1 | 118 | P300/CAF histone acetyltransferase bromodomain {Hu | 99.8 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.79 | |
| d1eqfa1 | 139 | TAFII250 double bromodomain module {Human (Homo sa | 99.79 | |
| d3dwya1 | 114 | CREB-binding protein, CBP {Human (Homo sapiens) [T | 99.77 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.75 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.74 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.66 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.63 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.42 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.35 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.32 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.3 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.25 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.24 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.21 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.21 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.15 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.1 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.06 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.01 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.92 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.81 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.78 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.76 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.47 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.46 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.41 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 98.31 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.29 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.29 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.07 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.81 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.55 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.37 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.3 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.12 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.76 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.65 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.65 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.98 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.96 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 95.91 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 94.48 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.52 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 92.26 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 91.4 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 91.23 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 90.76 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 89.61 | |
| d1mhna_ | 59 | Survival motor neuron protein 1, smn {Human (Homo | 84.56 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.5e-43 Score=310.31 Aligned_cols=310 Identities=19% Similarity=0.318 Sum_probs=274.4
Q ss_pred EEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 17899806798789999979999999982874799997778918999806789859999957999999984897899998
Q 000251 261 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 340 (1784)
Q Consensus 261 k~i~tL~GH~~~VtsIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWD 340 (1784)
....+|+||.+.|++++|+|++++||||+.||+|+|||+.+++++.++.+|...|.+++|++++.+++++..++.+.+|+
T Consensus 8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (317)
T d1vyhc1 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 87 (317)
T ss_dssp SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred CCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 84489858888768999938989999993899299998999979999957888677776301111011111111101110
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99997058841778855999952799950799999289909999367886655251379997324888788888999997
Q 000251 341 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 420 (1784)
Q Consensus 341 l~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~ 420 (1784)
.........+.+|...+.++.|++++. .+++++.|+.+++|++.++.....+. .+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~--------------------~~~~ 144 (317)
T d1vyhc1 88 FQGFECIRTMHGHDHNVSSVSIMPNGD---HIVSASRDKTIKMWEVQTGYCVKTFT--------------------GHRE 144 (317)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSSS---EEEEEETTSEEEEEETTTCCEEEEEE--------------------CCSS
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCC---EEEEECCCCCEEEEECCCCEEEEEEC--------------------CCCC
T ss_conf 011111111000000000000169985---57765267523575114430346871--------------------6777
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 63899987799889994089509997389999989999985123303788880079982676233333457888888875
Q 000251 421 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 500 (1784)
Q Consensus 421 ~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~ 500 (1784)
.+.+++|++++.+|++++.|+.|++|++.+ ......+.+|...+.++.|.+....
T Consensus 145 ~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~---------------- 199 (317)
T d1vyhc1 145 WVRMVRPNQDGTLIASCSNDQTVRVWVVAT---------KECKAELREHRHVVECISWAPESSY---------------- 199 (317)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTT---------CCEEEEECCCSSCEEEEEECCSCGG----------------
T ss_pred CCEEEECCCCCCEEEEEECCCEEEEEEECC---------CEEEEEEECCCCCCEEEEEEECCCC----------------
T ss_conf 630000166799999992798299975125---------4034788247787337998632564----------------
Q ss_pred CCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCC
Q ss_conf 55655668708998079809999278888885322211222456999999999999998300058999712999868997
Q 000251 501 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 580 (1784)
Q Consensus 501 ~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~ 580 (1784)
+... .........+...+.
T Consensus 200 ----------~~~~---------------------------------------------------~~~~~~~~~~~~~~~ 218 (317)
T d1vyhc1 200 ----------SSIS---------------------------------------------------EATGSETKKSGKPGP 218 (317)
T ss_dssp ----------GGGG---------------------------------------------------GCCSCC-------CC
T ss_pred ----------CEEE---------------------------------------------------CCCCCEEEEECCCCC
T ss_conf ----------1110---------------------------------------------------345630343025886
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf 89999539739999889994599980699984999990599949999958992999968999228998606853579999
Q 000251 581 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKF 660 (1784)
Q Consensus 581 ~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~~Itsiaf 660 (1784)
++++++.|+.|++|++.+++++..+.+|...|.+++|+| ++.+|++++.||.|+|||+.+++++..+.+|...|++++|
T Consensus 219 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~ 297 (317)
T d1vyhc1 219 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 297 (317)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEE
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEE
T ss_conf 147516997899988899968899968899879999879-9999999979894999999999199999289998899999
Q ss_pred CCCCCEEEEEECCCEEEEEE
Q ss_conf 37999999995897099999
Q 000251 661 SPDGASIILSDDVGQLYILN 680 (1784)
Q Consensus 661 SPDGk~LAsgs~DG~I~IWd 680 (1784)
+|++++|++++.||.|+||+
T Consensus 298 s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 298 HKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CSSSSCEEEEETTSEEEEEC
T ss_pred CCCCCEEEEEECCCEEEEEC
T ss_conf 49999999992899499829
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-41 Score=297.21 Aligned_cols=288 Identities=16% Similarity=0.260 Sum_probs=204.3
Q ss_pred CCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEE-----EEEEECCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 4217899806798789999979999999982874799997778918-----99980678985999995799999998489
Q 000251 259 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC-----LASCRGHEGDITDLAVSSNNALVASASND 333 (1784)
Q Consensus 259 ~~k~i~tL~GH~~~VtsIaFSPDG~~LATGS~DGtIkIWDi~tg~~-----l~tL~gH~~~VtsIafSPDg~lLASGS~D 333 (1784)
..+.++++ +|...|+|++|+|+|++||+|+ ||.|+|||+.++.. .....+|.+.|.+++|+|++++|++++.|
T Consensus 41 ~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d 118 (337)
T d1gxra_ 41 HARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA 118 (337)
T ss_dssp EEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred CCEEEEEC-CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECC
T ss_conf 75499987-9999289999989999999997-998899773677633116876404889968999986799889886123
Q ss_pred CEEEEEECCCC--CEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 78999989999--7058841778855999952799950799999289909999367886655251379997324888788
Q 000251 334 CIIRVWRLPDG--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 411 (1784)
Q Consensus 334 GtIrIWDl~tg--k~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~ 411 (1784)
+.|++|++... .....+..|...+.+++|+|++. ++++++.|+.|.+|++.++......
T Consensus 119 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~s~~~d~~i~~~~~~~~~~~~~~---------------- 179 (337)
T d1gxra_ 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK---VCFSCCSDGNIAVWDLHNQTLVRQF---------------- 179 (337)
T ss_dssp SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS---EEEEEETTSCEEEEETTTTEEEEEE----------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCC----------------
T ss_conf 321111111111111111111111111111111111---1111111111111111111111111----------------
Q ss_pred CCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 88899999763899987799889994089509997389999989999985123303788880079982676233333457
Q 000251 412 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 491 (1784)
Q Consensus 412 ~~s~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~ 491 (1784)
..+...+.+++|++++..+++++.|+.|++|+++++ ..+.. ..|...
T Consensus 180 ----~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~---------~~~~~-~~~~~~------------------- 226 (337)
T d1gxra_ 180 ----QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---------RQLQQ-HDFTSQ------------------- 226 (337)
T ss_dssp ----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---------EEEEE-EECSSC-------------------
T ss_pred ----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------EEECC-CCCCCC-------------------
T ss_conf ----111111110123444321122356655321111110---------00002-466661-------------------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEE
Q ss_conf 88888887555655668708998079809999278888885322211222456999999999999998300058999712
Q 000251 492 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVN 571 (1784)
Q Consensus 492 s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vt 571 (1784)
|.
T Consensus 227 ------------------------------------------------------------------------------i~ 228 (337)
T d1gxra_ 227 ------------------------------------------------------------------------------IF 228 (337)
T ss_dssp ------------------------------------------------------------------------------EE
T ss_pred ------------------------------------------------------------------------------EE
T ss_conf ------------------------------------------------------------------------------57
Q ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECC
Q ss_conf 99986899789999539739999889994599980699984999990599949999958992999968999228998606
Q 000251 572 MIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 651 (1784)
Q Consensus 572 sIafSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h 651 (1784)
+++|+|++.+|++++.|+.|++|++..+... ....|...|++++|+| ++.+|++++.||.|++||+.+++++..+. |
T Consensus 229 ~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~-~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~ 305 (337)
T d1gxra_ 229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSK-E 305 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE-C
T ss_pred EEEECCCCCCCCEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEECC-C
T ss_conf 9997153030000002564211111111100-0012456541699989-99999999489969999899997999926-9
Q ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 853579999379999999958970999998
Q 000251 652 RFRLVDGKFSPDGASIILSDDVGQLYILNT 681 (1784)
Q Consensus 652 ~~~ItsiafSPDGk~LAsgs~DG~I~IWdi 681 (1784)
...|.+++|+|++++|++++.||.|+||++
T Consensus 306 ~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 306 SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEECCCEEEEEEE
T ss_conf 998799999279999999908996999977
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.4e-42 Score=303.45 Aligned_cols=305 Identities=22% Similarity=0.408 Sum_probs=214.6
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEE------------------CCCCCEEEEEECCCCC
Q ss_conf 9980679878999997999999998287479999777891899980------------------6789859999957999
Q 000251 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR------------------GHEGDITDLAVSSNNA 325 (1784)
Q Consensus 264 ~tL~GH~~~VtsIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~------------------gH~~~VtsIafSPDg~ 325 (1784)
....+|.+.|+||+|+|+|++||+|+ |+.|+||++.+++.+..+. +|...|++++|+|+++
T Consensus 56 ~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ 134 (388)
T d1erja_ 56 HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 134 (388)
T ss_dssp EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf 76079999689999999999999994-99489998136405766316654432443211101467789889999889998
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCC
Q ss_conf 99998489789999899997058841778855999952799950799999289909999367886655251379997324
Q 000251 326 LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 405 (1784)
Q Consensus 326 lLASGS~DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~ 405 (1784)
+|++|+.||.|++|+...++.+..+.+|...|.+++|++++. .+++++.++.|++||..+........
T Consensus 135 ~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~~~~~~~~~~i~~~d~~~~~~~~~~~--------- 202 (388)
T d1erja_ 135 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD---KLVSGSGDRTVRIWDLRTGQCSLTLS--------- 202 (388)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---EEEEEETTSEEEEEETTTTEEEEEEE---------
T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCEEEEEEECCCCCCCCCCC---------
T ss_conf 012134441111211111111111111111111101111111---11122210156541011111100001---------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEC-CCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCC
Q ss_conf 88878888899999763899987-79988999408950999738999998999998512330378888007998267623
Q 000251 406 GRNMAPSSSAGPQSHQIFCCAFN-ANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVA 484 (1784)
Q Consensus 406 g~~~~~~~s~~~h~~~V~sIafS-PdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdgla 484 (1784)
+.....++.+. +++.+|++++.|+.|++|+..++...... ........+|...|.++.|+|++
T Consensus 203 ------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~-- 266 (388)
T d1erja_ 203 ------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL--DSENESGTGHKDSVYSVVFTRDG-- 266 (388)
T ss_dssp ------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE--C------CCCSSCEEEEEECTTS--
T ss_pred ------------CCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEE--CCCCCCCCCCCCCEEEEEECCCC--
T ss_conf ------------24544211236887875899738981999634557300010--24433345778987899997999--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 33334578888888755565566870899807980999927888888532221122245699999999999999830005
Q 000251 485 SRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 564 (1784)
Q Consensus 485 s~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~ 564 (1784)
..|++++.||.|++|++.+........ ............
T Consensus 267 ------------------------~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------~~~~~~~~~~~~ 305 (388)
T d1erja_ 267 ------------------------QSVVSGSLDRSVKLWNLQNANNKSDSK-----------------TPNSGTCEVTYI 305 (388)
T ss_dssp ------------------------SEEEEEETTSEEEEEEC--------------------------------CEEEEEE
T ss_pred ------------------------CEEEEEECCCCEEEEECCCCCCCCCCC-----------------CCCCCCEEEECC
T ss_conf ------------------------999999789928987515776432101-----------------344420011012
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEE------CCCCCEEEEEECCCCEEEEE
Q ss_conf 899971299986899789999539739999889994599980699984999990------59994999995899299996
Q 000251 565 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH------PFNPRIAMSAGYDGKTIVWD 638 (1784)
Q Consensus 565 ~h~~~VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafS------Pdd~~lLaSgs~DG~IrIWD 638 (1784)
.|...|.+++|+|++++|++|+.||.|++||+.+++++.++.+|.+.|++++++ | ++.+|++|+.||.|+||+
T Consensus 306 ~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~sp-d~~~l~s~s~Dg~I~iW~ 384 (388)
T d1erja_ 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP-EYNVFATGSGDCKARIWK 384 (388)
T ss_dssp CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCT-TCEEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCC-CCCEEEEEECCCEEEEEE
T ss_conf 4553278999889999999996989799999999969999968899789999846742589-999999991899799976
Q ss_pred C
Q ss_conf 8
Q 000251 639 I 639 (1784)
Q Consensus 639 l 639 (1784)
+
T Consensus 385 ~ 385 (388)
T d1erja_ 385 Y 385 (388)
T ss_dssp E
T ss_pred E
T ss_conf 2
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.3e-40 Score=287.88 Aligned_cols=292 Identities=22% Similarity=0.363 Sum_probs=237.5
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 21789980679878999997999999998287479999777891899980678985999995799999998489789999
Q 000251 260 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 339 (1784)
Q Consensus 260 ~k~i~tL~GH~~~VtsIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIW 339 (1784)
++..++|+||.+.|+|++|+|++.+||+|+.||+|+|||+.++..+..+.+|...|.+++|+|++.++++++.|+.+.+|
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred EEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEECC
T ss_conf 06527988878988899998999999999789955563102102579972465337756760121144310133201013
Q ss_pred ECCCC----CEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 89999----70588417788559999527999507999992899099993678866552513799973248887888889
Q 000251 340 RLPDG----LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 415 (1784)
Q Consensus 340 Dl~tg----k~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~ 415 (1784)
+.... .....+.+|............. .++....+.....|............
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 181 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN----QIVTSSGDTTCALWDIETGQQTTTFT------------------- 181 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEEEEEETT----EEEEEETTTEEEEEETTTTEEEEEEE-------------------
T ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCC-------------------
T ss_conf 3222212221110013542110111111111----11111244543200123221111123-------------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99997638999877998899940895099973899999899999851233037888800799826762333334578888
Q 000251 416 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 495 (1784)
Q Consensus 416 ~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~ 495 (1784)
.....+....+.+.+.++++++.|+.|++||+.+ ...+..+.+|...|++++|+|++
T Consensus 182 -~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~---------~~~~~~~~~h~~~i~~v~~~p~~------------- 238 (340)
T d1tbga_ 182 -GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE---------GMCRQTFTGHESDINAICFFPNG------------- 238 (340)
T ss_dssp -CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT---------TEEEEEECCCSSCEEEEEECTTS-------------
T ss_pred -CCCEEEEEECCCCCCCEEEEEECCCEEEEEECCC---------CCEEEEEECCCCCEEEEEECCCC-------------
T ss_conf -3101576300124421268760573699999999---------94889995788985899997998-------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEE
Q ss_conf 88875556556687089980798099992788888853222112224569999999999999983000589997129998
Q 000251 496 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 575 (1784)
Q Consensus 496 ~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIaf 575 (1784)
..|++++.||.|++|++....... ......+...|.+++|
T Consensus 239 -------------~~l~s~s~d~~i~~~~~~~~~~~~---------------------------~~~~~~~~~~i~~~~~ 278 (340)
T d1tbga_ 239 -------------NAFATGSDDATCRLFDLRADQELM---------------------------TYSHDNIICGITSVSF 278 (340)
T ss_dssp -------------SEEEEEETTSCEEEEETTTTEEEE---------------------------EECCTTCCSCEEEEEE
T ss_pred -------------CEEEEEECCCEEEEEEECCCCCCC---------------------------CCCCCCCCCCEEEEEE
T ss_conf -------------999999699969997521221111---------------------------1112244574589999
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 689978999953973999988999459998069998499999059994999995899299996
Q 000251 576 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638 (1784)
Q Consensus 576 SPDG~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWD 638 (1784)
+|++++|++|+.||.|++||+.+++++..+.+|.+.|++++|+| ++.+|++|+.||.|+|||
T Consensus 279 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEEC-CCCEEEEECCCCEEEEEC
T ss_conf 89999999997979899999999939899848999789999908-999999990699799859
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.6e-40 Score=287.11 Aligned_cols=288 Identities=14% Similarity=0.159 Sum_probs=198.6
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE-----EEEECCCCCCEEEEEECCCCCCCEEEEEEEC
Q ss_conf 18999806789859999957999999984897899998999970-----5884177885599995279995079999928
Q 000251 303 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP-----ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 377 (1784)
Q Consensus 303 ~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~-----i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~ 377 (1784)
+.++++ .|...|++++|+|++++||+|+ ||.|+|||+.++.. .....+|.+.|.+++|+|+++ +|++++.
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~---~l~s~~~ 117 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC---TLIVGGE 117 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS---EEEEEES
T ss_pred EEEEEC-CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCC---EEEEEEC
T ss_conf 499987-9999289999989999999997-9988997736776331168764048899689999867998---8988612
Q ss_pred CCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCC
Q ss_conf 99099993678866552513799973248887888889999976389998779988999408950999738999998999
Q 000251 378 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 457 (1784)
Q Consensus 378 DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~ 457 (1784)
||.|++||+.......... ...+...+.+++|+|++.++++++.++.|++|++
T Consensus 118 dg~i~iwd~~~~~~~~~~~------------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~--------- 170 (337)
T d1gxra_ 118 ASTLSIWDLAAPTPRIKAE------------------LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL--------- 170 (337)
T ss_dssp SSEEEEEECCCC--EEEEE------------------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEET---------
T ss_pred CCCCCCCCCCCCCCCCCCC------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------
T ss_conf 3321111111111111111------------------1111111111111111111111111111111111---------
Q ss_pred CCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCC
Q ss_conf 99851233037888800799826762333334578888888755565566870899807980999927888888532221
Q 000251 458 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 537 (1784)
Q Consensus 458 ~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w 537 (1784)
.+.+
T Consensus 171 --------------------------------------------------------------------~~~~-------- 174 (337)
T d1gxra_ 171 --------------------------------------------------------------------HNQT-------- 174 (337)
T ss_dssp --------------------------------------------------------------------TTTE--------
T ss_pred --------------------------------------------------------------------CCCC--------
T ss_conf --------------------------------------------------------------------1111--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf 12224569999999999999983000589997129998689978999953973999988999459998069998499999
Q 000251 538 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 617 (1784)
Q Consensus 538 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIaf 617 (1784)
.......|...|.+++|++++.++++++.|+.|++||+.+++.+..+. |...|++++|
T Consensus 175 ---------------------~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~ 232 (337)
T d1gxra_ 175 ---------------------LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGY 232 (337)
T ss_dssp ---------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEE
T ss_pred ---------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCEEEEEE
T ss_conf ---------------------111111111111101234443211223566553211111100000246-6661579997
Q ss_pred ECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCEEEC
Q ss_conf 05999499999589929999689992289986068535799993799999999589709999989983113553311331
Q 000251 618 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFL 697 (1784)
Q Consensus 618 SPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~~ItsiafSPDGk~LAsgs~DG~I~IWdi~sGe~~~~~~~~~~fs 697 (1784)
+| ++.++++++.|+.|++|++..+..... ..|...|.+++|+|+|++|++++.||.|++|++.+++.+...
T Consensus 233 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~------- 303 (337)
T d1gxra_ 233 CP-TGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS------- 303 (337)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTSSCEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-------
T ss_pred CC-CCCCCCEECCCCCCCCCCCCCCCCCCC-CCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEC-------
T ss_conf 15-303000000256421111111110000-124565416999899999999948996999989999799992-------
Q ss_pred CCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCCEE
Q ss_conf 79850688147862312211146768878756678888899951001010016622069879998499961899887268
Q 000251 698 GDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQ 777 (1784)
Q Consensus 698 ~D~r~Li~d~~g~Vld~~tql~p~l~~i~~~L~D~~~~p~p~~~q~l~~~r~~gv~~iAfSPDG~~LAvg~d~s~~~~i~ 777 (1784)
.+...+.+++|+|+|++||++ +.++.++
T Consensus 304 -------------------------------------------------~~~~~v~~~~~s~d~~~l~t~---s~D~~I~ 331 (337)
T d1gxra_ 304 -------------------------------------------------KESSSVLSCDISVDDKYIVTG---SGDKKAT 331 (337)
T ss_dssp -------------------------------------------------ECSSCEEEEEECTTSCEEEEE---ETTSCEE
T ss_pred -------------------------------------------------CCCCCEEEEEEECCCCEEEEE---ECCCEEE
T ss_conf -------------------------------------------------699987999992799999999---0899699
Q ss_pred EECC
Q ss_conf 4017
Q 000251 778 LQPL 781 (1784)
Q Consensus 778 l~~l 781 (1784)
+|++
T Consensus 332 vWdl 335 (337)
T d1gxra_ 332 VYEV 335 (337)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9977
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.2e-40 Score=285.60 Aligned_cols=313 Identities=17% Similarity=0.267 Sum_probs=249.6
Q ss_pred ECCCCEEEEEECCCCEE----EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC------------
Q ss_conf 82874799997778918----99980678985999995799999998489789999899997058841------------
Q 000251 288 GSDDRLVKIWSMETAYC----LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR------------ 351 (1784)
Q Consensus 288 GS~DGtIkIWDi~tg~~----l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~l~------------ 351 (1784)
+..++.+.+|+...... +....+|.+.|+||+|+|+|++||+|+ |+.|+||++.+++.+..+.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~ 112 (388)
T d1erja_ 34 KQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENL 112 (388)
T ss_dssp EECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------
T ss_pred CCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCC
T ss_conf 688970898688777620541076079999689999999999999994-9948999813640576631665443244321
Q ss_pred ------CCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf ------77885599995279995079999928990999936788665525137999732488878888899999763899
Q 000251 352 ------GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 425 (1784)
Q Consensus 352 ------gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sI 425 (1784)
.|...|++++|+|+++ +|++++.||.|++|+...+...... ..|...|.++
T Consensus 113 ~~~~~~~~~~~V~~l~~s~~~~---~l~s~~~dg~v~i~~~~~~~~~~~~--------------------~~h~~~v~~~ 169 (388)
T d1erja_ 113 NTSSSPSSDLYIRSVCFSPDGK---FLATGAEDRLIRIWDIENRKIVMIL--------------------QGHEQDIYSL 169 (388)
T ss_dssp ------CCCCBEEEEEECTTSS---EEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSSCEEEE
T ss_pred CCCCCCCCCCCEEEEEECCCCC---CCEECCCCCCCCCCCCCCCCCCCCC--------------------CCCCCCCCCC
T ss_conf 1101467789889999889998---0121344411112111111111111--------------------1111111110
Q ss_pred EECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98779988999408950999738999998999998512330378888007998267623333345788888887555655
Q 000251 426 AFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 505 (1784)
Q Consensus 426 afSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~ 505 (1784)
++++++..+++++.++.+++|+..+ .........+ .....+.+.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~i~~~d~~~---------~~~~~~~~~~-~~~~~~~~~~~~----------------------- 216 (388)
T d1erja_ 170 DYFPSGDKLVSGSGDRTVRIWDLRT---------GQCSLTLSIE-DGVTTVAVSPGD----------------------- 216 (388)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTT---------TEEEEEEECS-SCEEEEEECSTT-----------------------
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCC---------CCCCCCCCCC-CCCCCCCCCCCC-----------------------
T ss_conf 1111111111222101565410111---------1110000124-544211236887-----------------------
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEE
Q ss_conf 66870899807980999927888888532221122245699999999999999830005899971299986899789999
Q 000251 506 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 585 (1784)
Q Consensus 506 ~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSg 585 (1784)
+..|++++.||.|++|+..++...... .........|...|.+++|+|++.+|+++
T Consensus 217 --~~~l~~~~~d~~i~i~~~~~~~~~~~~----------------------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 272 (388)
T d1erja_ 217 --GKYIAAGSLDRAVRVWDSETGFLVERL----------------------DSENESGTGHKDSVYSVVFTRDGQSVVSG 272 (388)
T ss_dssp --CCEEEEEETTSCEEEEETTTCCEEEEE----------------------C------CCCSSCEEEEEECTTSSEEEEE
T ss_pred --CCEEEEECCCCEEEEEECCCCCCCEEE----------------------CCCCCCCCCCCCCEEEEEECCCCCEEEEE
T ss_conf --875899738981999634557300010----------------------24433345778987899997999999999
Q ss_pred ECCCEEEEEECCCCC------------EEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCC
Q ss_conf 539739999889994------------59998069998499999059994999995899299996899922899860685
Q 000251 586 IMDCRICVWNAADGS------------LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF 653 (1784)
Q Consensus 586 s~DGsIrIWDl~tgk------------li~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~ 653 (1784)
+.|+.|++|++.++. .......|...|++++|+| ++.+|++|+.||.|++||+.+++++..+.+|..
T Consensus 273 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~ 351 (388)
T d1erja_ 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN 351 (388)
T ss_dssp ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred ECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEECCCC
T ss_conf 7899289875157764321013444200110124553278999889-999999996989799999999969999968899
Q ss_pred CEEEEEE------CCCCCEEEEEECCCEEEEEECC
Q ss_conf 3579999------3799999999589709999989
Q 000251 654 RLVDGKF------SPDGASIILSDDVGQLYILNTG 682 (1784)
Q Consensus 654 ~Itsiaf------SPDGk~LAsgs~DG~I~IWdi~ 682 (1784)
.|.++++ +|++.+||+++.||.|+||++.
T Consensus 352 ~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEE
T ss_conf 78999984674258999999999189979997621
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-39 Score=282.23 Aligned_cols=326 Identities=24% Similarity=0.399 Sum_probs=264.9
Q ss_pred CCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf 23421789980679878999997999999998287479999777891899980678985999995799999998489789
Q 000251 257 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCII 336 (1784)
Q Consensus 257 ~~~~k~i~tL~GH~~~VtsIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtI 336 (1784)
...+++.++|+||.+.|.+ +++++|++||||+.||+|+|||+.++++++++.+|.+.|.+++|+++ +|++++.|+.+
T Consensus 3 ~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~ 79 (342)
T d2ovrb2 3 RGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTL 79 (342)
T ss_dssp HSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCE
T ss_pred CCCCCCCEEECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC--CCCCCEECCCC
T ss_conf 9988758898886875099-99978999999918990999989999799999488999899994798--63210000011
Q ss_pred EEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 99989999705884177885599995279995079999928990999936788665525137999732488878888899
Q 000251 337 RVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 416 (1784)
Q Consensus 337 rIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~ 416 (1784)
++|+............+...+....+.+. .++.+..|+.+.+|+..++.....+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~d~~i~~~~~~~~~~~~~~~~------------------- 135 (342)
T d2ovrb2 80 KVWNAETGECIHTLYGHTSTVRCMHLHEK-----RVVSGSRDATLRVWDIETGQCLHVLMG------------------- 135 (342)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEETT-----EEEEEETTSEEEEEESSSCCEEEEEEC-------------------
T ss_pred CCCCCCCCCCEECCCCCCEEEEEEECCCC-----CCCCCCCCEEEEEEECCCCCCEEEEEC-------------------
T ss_conf 11111100000001233304765202465-----221234440378740355630011100-------------------
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 99976389998779988999408950999738999998999998512330378888007998267623333345788888
Q 000251 417 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 496 (1784)
Q Consensus 417 ~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~ 496 (1784)
.. .....+......+++++.++.|++|+... ...+..+.+|...+..+.+.+
T Consensus 136 -~~--~~~~~~~~~~~~~~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~~~~~~~~---------------- 187 (342)
T d2ovrb2 136 -HV--AAVRCVQYDGRRVVSGAYDFMVKVWDPET---------ETCLHTLQGHTNRVYSLQFDG---------------- 187 (342)
T ss_dssp -CS--SCEEEEEECSSCEEEEETTSCEEEEEGGG---------TEEEEEECCCSSCEEEEEECS----------------
T ss_pred -CC--CCCEEECCCCCEEEEECCCCEEEEEECCC---------CEEEEEECCCCCCCCCCCCCC----------------
T ss_conf -11--11000001333024335898699952523---------436678727544421006899----------------
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEEC
Q ss_conf 88755565566870899807980999927888888532221122245699999999999999830005899971299986
Q 000251 497 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 576 (1784)
Q Consensus 497 ~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafS 576 (1784)
..+++++.||.|++|++... ........|...+.++.++
T Consensus 188 ------------~~l~s~~~dg~i~~~d~~~~-----------------------------~~~~~~~~~~~~v~~~~~~ 226 (342)
T d2ovrb2 188 ------------IHVVSGSLDTSIRVWDVETG-----------------------------NCIHTLTGHQSLTSGMELK 226 (342)
T ss_dssp ------------SEEEEEETTSCEEEEETTTC-----------------------------CEEEEECCCCSCEEEEEEE
T ss_pred ------------CEEEEEECCCEEEEEECCCC-----------------------------EEEEEECCCCCCEEEEECC
T ss_conf ------------99999958993999525565-----------------------------3656741665320577068
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEEEC---CCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE----
Q ss_conf 8997899995397399998899945999806---999849999905999499999589929999689992289986----
Q 000251 577 LDNRFVLAAIMDCRICVWNAADGSLVHSLTG---HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE---- 649 (1784)
Q Consensus 577 PDG~~LaSgs~DGsIrIWDl~tgkli~~L~g---H~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~---- 649 (1784)
+++|++++.|+.|++|++...+....+.+ |...+.++.++ +.++++|+.||.|+|||+.++++++.+.
T Consensus 227 --~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~ 301 (342)
T d2ovrb2 227 --DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 301 (342)
T ss_dssp --TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTT
T ss_pred --CCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECEEECCCC---CCEEEEECCCCEEEEEECCCCCEEEEEECCCC
T ss_conf --9999997489889998655442211122100011010000137---98449990899899999999979899862347
Q ss_pred -CCCCCEEEEEECCCCCEEEEEECCCE----EEEEECCC
Q ss_conf -06853579999379999999958970----99999899
Q 000251 650 -ISRFRLVDGKFSPDGASIILSDDVGQ----LYILNTGQ 683 (1784)
Q Consensus 650 -~h~~~ItsiafSPDGk~LAsgs~DG~----I~IWdi~s 683 (1784)
+|...|++++|+|++.+||+|+.||. |++||+..
T Consensus 302 ~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 302 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCC
T ss_conf 898897899998799989999968999704899993899
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-39 Score=285.04 Aligned_cols=341 Identities=20% Similarity=0.309 Sum_probs=244.2
Q ss_pred EEEEECCCCCCE-EEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 789980679878-9999979999999982874799997778918999806789859999957999999984897899998
Q 000251 262 NIKRVRGHRNAV-YCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 340 (1784)
Q Consensus 262 ~i~tL~GH~~~V-tsIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWD 340 (1784)
...+|+||...| +|++| ++++||||+.||+|+|||+.+++++.++.+|.+.|++++|+++ .+|++++.|+.|++|+
T Consensus 4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80 (355)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred CCEEECCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCCCCC
T ss_conf 758889837886999998--8999999918990999989999399999789998899998699-9999996452443211
Q ss_pred CCCCCEEEEECCCCC--CEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCC---CCCCCCC
Q ss_conf 999970588417788--55999952799950799999289909999367886655251379997324888---7888889
Q 000251 341 LPDGLPISVLRGHTA--AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN---MAPSSSA 415 (1784)
Q Consensus 341 l~tgk~i~~l~gH~~--~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~---~~~~~s~ 415 (1784)
+.............. .+....+.+++. .+++++.|+.|++|++...................... .......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (355)
T d1nexb2 81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIK---YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 157 (355)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEEETTEE---EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC---EEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEE
T ss_conf 11111111110011111111111112322---045543888689998567730012465200010000011234012101
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99997638999877998899940895099973899999899999851233037888800799826762333334578888
Q 000251 416 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 495 (1784)
Q Consensus 416 ~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~ 495 (1784)
..+...+ ..+.+++..++++..|+.|++|++.+ ...+....++...+.++.|++.+
T Consensus 158 ~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~------------- 213 (355)
T d1nexb2 158 RGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQ---------MKCLYILSGHTDRIYSTIYDHER------------- 213 (355)
T ss_dssp ECCSSCE--EEEEEETTEEEEEETTSCEEEEETTT---------TEEEEEECCCSSCEEEEEEETTT-------------
T ss_pred EECCCCC--CCCCCCCCEEEEECCCCEEEEEECCC---------CCCEEEEECCCCCCCCCCCCCCC-------------
T ss_conf 1002221--00002563344211442044430131---------10001100012332111111210-------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEE
Q ss_conf 88875556556687089980798099992788888853222112224569999999999999983000589997129998
Q 000251 496 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 575 (1784)
Q Consensus 496 ~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIaf 575 (1784)
..+++++.|+.|++|++.+ +.....+..|...|.+++|
T Consensus 214 -------------~~~~~~~~d~~i~i~d~~~-----------------------------~~~~~~~~~h~~~v~~~~~ 251 (355)
T d1nexb2 214 -------------KRCISASMDTTIRIWDLEN-----------------------------GELMYTLQGHTALVGLLRL 251 (355)
T ss_dssp -------------TEEEEEETTSCEEEEETTT-----------------------------CCEEEEECCCSSCCCEEEE
T ss_pred -------------EEEECCCCCCEEEEEECCC-----------------------------CCCCCCCCCCCCCCCCCCC
T ss_conf -------------0210124563687630122-----------------------------1111111111111111123
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEE-EECCCCC
Q ss_conf 689978999953973999988999459998069998499999059994999995899299996899922899-8606853
Q 000251 576 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRI-YEISRFR 654 (1784)
Q Consensus 576 SPDG~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~t-l~~h~~~ 654 (1784)
+ +++|++++.||.|++||+.++.... ..|...+.++.+.+.++.+++++ .|+.|+|||+.+++++.. +..|...
T Consensus 252 ~--~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~ 326 (355)
T d1nexb2 252 S--DKFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQ 326 (355)
T ss_dssp C--SSEEEEECTTSEEEEEETTTCCEEE--EEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSE
T ss_pred C--CCEEEEEECCCCCCCCCCCCCCEEC--CCCCCCCEEEEEECCCCCEEEEE-ECCEEEEEECCCCCEEEEEECCCCCC
T ss_conf 2--1003332011111111111111000--12468822999984999899998-09979999999997988884589998
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 57999937999999995897099999
Q 000251 655 LVDGKFSPDGASIILSDDVGQLYILN 680 (1784)
Q Consensus 655 ItsiafSPDGk~LAsgs~DG~I~IWd 680 (1784)
|.+++|+|+ .++++++.||.++||-
T Consensus 327 V~~v~~~~~-~~~~~~s~dg~~~l~~ 351 (355)
T d1nexb2 327 IWSVNFKGK-TLVAAVEKDGQSFLEI 351 (355)
T ss_dssp EEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred EEEEEECCC-EEEEEEECCCCEEEEE
T ss_conf 999998399-1999998989099999
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.2e-39 Score=280.38 Aligned_cols=264 Identities=14% Similarity=0.177 Sum_probs=193.9
Q ss_pred CCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCE--EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE
Q ss_conf 79878999997999999998287479999777891--8999806789859999957999999984897899998999970
Q 000251 269 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY--CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP 346 (1784)
Q Consensus 269 H~~~VtsIaFSPDG~~LATGS~DGtIkIWDi~tg~--~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~ 346 (1784)
+..+|+|++|+|+|++||+|+.||.|+||++.+++ ++..+.+|.++|.+++|+|++++|++++.|++|+||++.++..
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCC
T ss_conf 99883899998999999999488989999888997899999558899888999979999999997999399986203321
Q ss_pred --EEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf --588417788559999527999507999992899099993678866552513799973248887888889999976389
Q 000251 347 --ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC 424 (1784)
Q Consensus 347 --i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~s 424 (1784)
...+.+|...|++++|+|++. .|++++.|++|++|++........... ....+...|.+
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~---~l~~~s~d~~i~i~~~~~~~~~~~~~~----------------~~~~~~~~v~~ 146 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEK---KFAVGSGSRVISICYFEQENDWWVCKH----------------IKKPIRSTVLS 146 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSS---EEEEEETTSSEEEEEEETTTTEEEEEE----------------ECTTCCSCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCC---CCEEECCCCCCEEEEEECCCCCCCCCC----------------CCCCCCCCCCC
T ss_conf 10012232211000111111121---100000257630254420334331110----------------01011122211
Q ss_pred EEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99877998899940895099973899999899999851233037888800799826762333334578888888755565
Q 000251 425 CAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNS 504 (1784)
Q Consensus 425 IafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~ 504 (1784)
++|+|++.+|++|+.|+.|++|+............ .+.
T Consensus 147 v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~-------------------~~~----------------------- 184 (371)
T d1k8kc_ 147 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP-------------------TPW----------------------- 184 (371)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC-------------------BTT-----------------------
T ss_pred CCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCC-------------------CCC-----------------------
T ss_conf 11111111100013476799984015764310012-------------------211-----------------------
Q ss_pred CCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEE
Q ss_conf 56687089980798099992788888853222112224569999999999999983000589997129998689978999
Q 000251 505 WFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 584 (1784)
Q Consensus 505 ~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaS 584 (1784)
+.. ...+........|...|.+++|+|++++|++
T Consensus 185 -------------------~~~---------------------------~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s 218 (371)
T d1k8kc_ 185 -------------------GSK---------------------------MPFGELMFESSSSCGWVHGVCFSANGSRVAW 218 (371)
T ss_dssp -------------------BSC---------------------------CCTTCEEEECCCCSSCEEEEEECSSSSEEEE
T ss_pred -------------------CCC---------------------------CCCEEEEEECCCCCCCEEEEEEECCCCCCCC
T ss_conf -------------------111---------------------------1110112440476674789875123321000
Q ss_pred EECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 953973999988999459998069998499999059994999995899299996899
Q 000251 585 AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 641 (1784)
Q Consensus 585 gs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~t 641 (1784)
++.|+.|++||+.++..+..+.+|..+|.+++|+| ++.++++ +.|+.+++|....
T Consensus 219 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~-d~~~la~-g~d~~~~~~~~~~ 273 (371)
T d1k8kc_ 219 VSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-ESSLVAA-GHDCFPVLFTYDS 273 (371)
T ss_dssp EETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEE-ETTSSCEEEEEET
T ss_pred CCCCCCCEEEEEECCCCEEEEECCCCCCEEEEECC-CCCEEEE-ECCCCEEEEEEEC
T ss_conf 01478605886410121000001466520365469-9979999-8199267877608
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.7e-39 Score=280.71 Aligned_cols=289 Identities=12% Similarity=0.123 Sum_probs=226.4
Q ss_pred CCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE
Q ss_conf 67987899999799999999828747999977789189998067898599999579999999848978999989999705
Q 000251 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 347 (1784)
Q Consensus 268 GH~~~VtsIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~i 347 (1784)
.+++.+.+++++|+|+.||.++ ++.|.+|++.++.....+.+|...|++++|+|++++||+|+.||+|+||++.++...
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCC
T ss_conf 7788759999969989999996-999999999999661797478888899999489996722556736746631011110
Q ss_pred --EEECCCCCCEEEEEECCCCCCCEEEEEEEC--CCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf --884177885599995279995079999928--9909999367886655251379997324888788888999997638
Q 000251 348 --SVLRGHTAAVTAIAFSPRPGSVYQLLSSSD--DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 423 (1784)
Q Consensus 348 --~~l~gH~~~VtsIafSPdg~~~~~LvSgs~--DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~ 423 (1784)
..+.+|...|.+++|+|+++ +|++++. +..+.+|++.+++....+ ..|...|.
T Consensus 94 ~~~~~~~~~~~v~~v~~s~d~~---~l~~~~~~~~~~~~v~~~~~~~~~~~l--------------------~~h~~~v~ 150 (311)
T d1nr0a1 94 LKTTIPVFSGPVKDISWDSESK---RIAAVGEGRERFGHVFLFDTGTSNGNL--------------------TGQARAMN 150 (311)
T ss_dssp EEEEEECSSSCEEEEEECTTSC---EEEEEECCSSCSEEEEETTTCCBCBCC--------------------CCCSSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCC--------------------CCCCCCCC
T ss_conf 0001343357543323331110---001111221111111111111111111--------------------11111111
Q ss_pred EEEECCCCCE-EEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9998779988-999408950999738999998999998512330378888007998267623333345788888887555
Q 000251 424 CCAFNANGTV-FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 502 (1784)
Q Consensus 424 sIafSPdG~~-LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~ 502 (1784)
+++|+|++.+ |++|+.|+.|++|++.+ ......+..|...|.++.|+|++
T Consensus 151 ~v~~~~~~~~~l~sgs~d~~i~i~d~~~---------~~~~~~~~~~~~~i~~v~~~p~~-------------------- 201 (311)
T d1nr0a1 151 SVDFKPSRPFRIISGSDDNTVAIFEGPP---------FKFKSTFGEHTKFVHSVRYNPDG-------------------- 201 (311)
T ss_dssp EEEECSSSSCEEEEEETTSCEEEEETTT---------BEEEEEECCCSSCEEEEEECTTS--------------------
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCC--------------------
T ss_conf 1111211101200011221111111111---------11111111111111112347642--------------------
Q ss_pred CCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEE
Q ss_conf 65566870899807980999927888888532221122245699999999999999830005899971299986899789
Q 000251 503 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 582 (1784)
Q Consensus 503 ~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~L 582 (1784)
..+++++.|+.+++|++.++...... ........+|...|++++|+|++++|
T Consensus 202 ------~~l~~~~~d~~v~~~d~~~~~~~~~~----------------------~~~~~~~~~h~~~V~~~~~s~~~~~l 253 (311)
T d1nr0a1 202 ------SLFASTGGDGTIVLYNGVDGTKTGVF----------------------EDDSLKNVAHSGSVFGLTWSPDGTKI 253 (311)
T ss_dssp ------SEEEEEETTSCEEEEETTTCCEEEEC----------------------BCTTSSSCSSSSCEEEEEECTTSSEE
T ss_pred ------CCCCCCCCCCCCCCCCCCCCCCCCCC----------------------CCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf ------21211111111100012446411222----------------------11111110024653210247889999
Q ss_pred EEEECCCEEEEEECCCCCEEEEEECCCC---CEEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 9995397399998899945999806999---849999905999499999589929999689
Q 000251 583 LAAIMDCRICVWNAADGSLVHSLTGHTE---STYVLDVHPFNPRIAMSAGYDGKTIVWDIW 640 (1784)
Q Consensus 583 aSgs~DGsIrIWDl~tgkli~~L~gH~~---~VtsIafSPdd~~lLaSgs~DG~IrIWDl~ 640 (1784)
++|+.|+.|+|||+.++++++++..|.. .+.++.|+ +..+++++.||.|++||.+
T Consensus 254 ~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~---~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 254 ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT---KQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC---SSCEEEEETTCCEEEEETT
T ss_pred EEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEEC---CCEEEEEECCCEEEEEECC
T ss_conf 999379969999999996999997999863329999951---9999999899979999588
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.4e-37 Score=270.60 Aligned_cols=294 Identities=18% Similarity=0.238 Sum_probs=247.1
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCE
Q ss_conf 91899980678985999995799999998489789999899997058841778855999952799950799999289909
Q 000251 302 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 381 (1784)
Q Consensus 302 g~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtI 381 (1784)
.+..++|+||.+.|++|+|+|++.+||+|+.||+|+|||+.+++.+..+..|...|.+++|+|++. ++++++.|+.+
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~---~l~~~~~d~~i 121 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN---YVACGGLDNIC 121 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSS---EEEEEETTCCE
T ss_pred EEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCE---EEEEECCCCEE
T ss_conf 065279888789888999989999999997899555631021025799724653377567601211---44310133201
Q ss_pred EEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 99936788665525137999732488878888899999763899987799889994089509997389999989999985
Q 000251 382 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 461 (1784)
Q Consensus 382 rIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~ 461 (1784)
.+|+............ ....+.......... .+..++....+.....+.... ..
T Consensus 122 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~ 175 (340)
T d1tbga_ 122 SIYNLKTREGNVRVSR----------------ELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIET---------GQ 175 (340)
T ss_dssp EEEESSSSCSCCCEEE----------------EECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTT---------TE
T ss_pred ECCCCCCCCCCCCCCE----------------ECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC---------CC
T ss_conf 0133222212221110----------------013542110111111-111111112445432001232---------21
Q ss_pred CEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 12330378888007998267623333345788888887555655668708998079809999278888885322211222
Q 000251 462 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 541 (1784)
Q Consensus 462 ~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~ 541 (1784)
.......+...+....+.+.. ..+++++.|+.|++||+.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~d~~v~i~d~~~-------------- 215 (340)
T d1tbga_ 176 QTTTFTGHTGDVMSLSLAPDT--------------------------RLFVSGACDASAKLWDVRE-------------- 215 (340)
T ss_dssp EEEEEECCSSCEEEEEECTTS--------------------------SEEEEEETTTEEEEEETTT--------------
T ss_pred CCCCCCCCCEEEEEECCCCCC--------------------------CEEEEEECCCEEEEEECCC--------------
T ss_conf 111123310157630012442--------------------------1268760573699999999--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE--CCCCCEEEEEEEC
Q ss_conf 45699999999999999830005899971299986899789999539739999889994599980--6999849999905
Q 000251 542 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GHTESTYVLDVHP 619 (1784)
Q Consensus 542 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~--gH~~~VtsIafSP 619 (1784)
+.....+..|...|++++|+|++.+|++|+.|+.|++|++.....+..+. .+...|.+++|+|
T Consensus 216 ---------------~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 280 (340)
T d1tbga_ 216 ---------------GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp ---------------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS
T ss_pred ---------------CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf ---------------94889995788985899997998999999699969997521221111111224457458999989
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 9994999995899299996899922899860685357999937999999995897099999
Q 000251 620 FNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 680 (1784)
Q Consensus 620 dd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~~ItsiafSPDGk~LAsgs~DG~I~IWd 680 (1784)
++.+|++|+.||.|+|||+.+++++..+.+|...|++++|+|++.+|++++.||.|+||+
T Consensus 281 -~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 281 -SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf -999999997979899999999939899848999789999908999999990699799859
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6.2e-38 Score=272.97 Aligned_cols=287 Identities=14% Similarity=0.144 Sum_probs=240.5
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCC
Q ss_conf 67898599999579999999848978999989999705884177885599995279995079999928990999936788
Q 000251 310 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 389 (1784)
Q Consensus 310 gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg 389 (1784)
.+.+.+..++++|+++.|+.+. ++.|.+|++.++.....+.+|...|++++|+|++. +|++|+.||+|++|++..+
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~---~latg~~dg~i~iwd~~~~ 90 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY---YCASGDVHGNVRIWDTTQT 90 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS---EEEEEETTSEEEEEESSST
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCC---EEECCCCCCEEEEEEEECC
T ss_conf 7788759999969989999996-99999999999966179747888889999948999---6722556736746631011
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC--CCEEEEECCCCCCCCCCCCCCCCEEEEC
Q ss_conf 66552513799973248887888889999976389998779988999408--9509997389999989999985123303
Q 000251 390 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS--DTLARVWNACKPNTDDSDQPNHEIDVLS 467 (1784)
Q Consensus 390 ~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~--DGtIrIWDl~t~~~~~s~~~~~~i~~l~ 467 (1784)
.......+ ..|...|.+++|+|++++|++++. +..+++|++.+ ......+.
T Consensus 91 ~~~~~~~~------------------~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~---------~~~~~~l~ 143 (311)
T d1nr0a1 91 THILKTTI------------------PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT---------GTSNGNLT 143 (311)
T ss_dssp TCCEEEEE------------------ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT---------CCBCBCCC
T ss_pred CCCCCCCC------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCC
T ss_conf 11000013------------------4335754332333111000111122111111111111---------11111111
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78888007998267623333345788888887555655668708998079809999278888885322211222456999
Q 000251 468 GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPP 547 (1784)
Q Consensus 468 gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~ 547 (1784)
+|...|.+++|+|++ ...+++|+.||.|++||+++.+
T Consensus 144 ~h~~~v~~v~~~~~~-------------------------~~~l~sgs~d~~i~i~d~~~~~------------------ 180 (311)
T d1nr0a1 144 GQARAMNSVDFKPSR-------------------------PFRIISGSDDNTVAIFEGPPFK------------------ 180 (311)
T ss_dssp CCSSCEEEEEECSSS-------------------------SCEEEEEETTSCEEEEETTTBE------------------
T ss_pred CCCCCCCCCCCCCCC-------------------------EEEECCCCCCCCCCCCCCCCCC------------------
T ss_conf 111111111112111-------------------------0120001122111111111111------------------
Q ss_pred CCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE-------CCCCCEEEEEEECC
Q ss_conf 99999999999830005899971299986899789999539739999889994599980-------69998499999059
Q 000251 548 PPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT-------GHTESTYVLDVHPF 620 (1784)
Q Consensus 548 ~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~-------gH~~~VtsIafSPd 620 (1784)
.......|...|+++.|+|+++++++++.|+.|++|+..++..+..+. +|.+.|++++|+|
T Consensus 181 -----------~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~- 248 (311)
T d1nr0a1 181 -----------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP- 248 (311)
T ss_dssp -----------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-
T ss_pred -----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf -----------11111111111111234764221211111111100012446411222111111100246532102478-
Q ss_pred CCCEEEEEECCCCEEEEECCCCCEEEEEECCCC-CEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 994999995899299996899922899860685-35799993799999999589709999989
Q 000251 621 NPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF-RLVDGKFSPDGASIILSDDVGQLYILNTG 682 (1784)
Q Consensus 621 d~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~-~ItsiafSPDGk~LAsgs~DG~I~IWdi~ 682 (1784)
++.+|++|+.||.|+|||+.++++++++..+.. ....+.+.+++.+|++++.||.|.+|+..
T Consensus 249 ~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEECC
T ss_conf 899999993799699999999969999979998633299999519999999899979999588
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.7e-37 Score=270.00 Aligned_cols=290 Identities=16% Similarity=0.163 Sum_probs=212.6
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEE-CCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 21789980679878999997999999998287479999777891899980-67898599999579999999848978999
Q 000251 260 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSNNALVASASNDCIIRV 338 (1784)
Q Consensus 260 ~k~i~tL~GH~~~VtsIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~-gH~~~VtsIafSPDg~lLASGS~DGtIrI 338 (1784)
++..+++.||.++|+|++|+|+|++||+|+.||+|++||+.+++.+..+. +|...|++++|+|++.++ +++.|+.+++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~ 80 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKV 80 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEE
T ss_pred CCCCEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCEEE-CCCCEEEEEE
T ss_conf 861368488887828999979999999990899299999999968899837887748998840331121-0231026887
Q ss_pred EECCCCC---EEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 9899997---0588417788559999527999507999992899099993678866552513799973248887888889
Q 000251 339 WRLPDGL---PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 415 (1784)
Q Consensus 339 WDl~tgk---~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~ 415 (1784)
|++.... .......+...+.+++|++++. .+ +++.++.+.+|+..... ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~---~~-~~~~~~~i~~~~~~~~~---~~-------------------- 133 (299)
T d1nr0a2 81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGD---IA-VAACYKHIAIYSHGKLT---EV-------------------- 133 (299)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSS---CE-EEEESSEEEEEETTEEE---EE--------------------
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CC-CCCCCCCCCCCCCCCCC---CC--------------------
T ss_conf 31677620111000111134432100112211---11-12222222111111111---10--------------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99997638999877998899940895099973899999899999851233037888800799826762333334578888
Q 000251 416 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 495 (1784)
Q Consensus 416 ~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~ 495 (1784)
.....+.+++|+|++.+|++|+.|+.|++|++.+.. ........|...|.+++|+|++
T Consensus 134 -~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~--------~~~~~~~~~~~~i~~~~~~~~~------------- 191 (299)
T d1nr0a2 134 -PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS--------VSEVKTIVHPAEITSVAFSNNG------------- 191 (299)
T ss_dssp -ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE--------EEEEEEEECSSCEEEEEECTTS-------------
T ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCC-------------
T ss_conf -111123322111111111111111111111111111--------1111111111111111111111-------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEE
Q ss_conf 88875556556687089980798099992788888853222112224569999999999999983000589997129998
Q 000251 496 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 575 (1784)
Q Consensus 496 ~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIaf 575 (1784)
..+++++.|+.|++|++.++... .....+..|...|++++|
T Consensus 192 -------------~~l~~~~~d~~i~~~~~~~~~~~--------------------------~~~~~~~~h~~~v~~l~~ 232 (299)
T d1nr0a2 192 -------------AFLVATDQSRKVIPYSVANNFEL--------------------------AHTNSWTFHTAKVACVSW 232 (299)
T ss_dssp -------------SEEEEEETTSCEEEEEGGGTTEE--------------------------SCCCCCCCCSSCEEEEEE
T ss_pred -------------CCCCCCCCCCCCCCCCCCCCCCC--------------------------CCCCCCCCCCCCCCCCCC
T ss_conf -------------11111111111111111111111--------------------------111111111111111124
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEE--EC-CCCCEEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 689978999953973999988999459998--06-999849999905999499999589929999689
Q 000251 576 SLDNRFVLAAIMDCRICVWNAADGSLVHSL--TG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 640 (1784)
Q Consensus 576 SPDG~~LaSgs~DGsIrIWDl~tgkli~~L--~g-H~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~ 640 (1784)
+|++.+|++|+.|+.|++||+.++.....+ .. +...|.++.|.+ +.+|++++.|+.|+|||+.
T Consensus 233 s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN--ETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp CTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE--TTEEEEEETTSCEEEEECC
T ss_pred CCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEECC--CCEEEEEECCCEEEEEECC
T ss_conf 66645138882899799998999973148983489889689999779--8999999289979999444
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2e-35 Score=255.55 Aligned_cols=298 Identities=23% Similarity=0.287 Sum_probs=229.4
Q ss_pred EEEEEECCCCCE-EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEE
Q ss_conf 899980678985-9999957999999984897899998999970588417788559999527999507999992899099
Q 000251 304 CLASCRGHEGDI-TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 382 (1784)
Q Consensus 304 ~l~tL~gH~~~V-tsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIr 382 (1784)
...+|+||...| +|++| ++++||+|+.||+|+|||+.+++++..+.+|.+.|++++|+|++ +|++++.||+|+
T Consensus 4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~----~l~s~s~D~~i~ 77 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG----ILVSGSTDRTVR 77 (355)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT----EEEEEETTCCEE
T ss_pred CCEEECCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCC----EEEEEECCCCCC
T ss_conf 758889837886999998--89999999189909999899993999997899988999986999----999996452443
Q ss_pred EEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCC---
Q ss_conf 99367886655251379997324888788888999997638999877998899940895099973899999899999---
Q 000251 383 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQP--- 459 (1784)
Q Consensus 383 IWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~--- 459 (1784)
+|++........... .........+.+.+++..+++++.|+.|++|++.+.........
T Consensus 78 iw~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 139 (355)
T d1nexb2 78 VWDIKKGCCTHVFEG------------------HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 139 (355)
T ss_dssp EEETTTTEEEEEECC------------------CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------C
T ss_pred CCCCCCCCCCCCCCC------------------CCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCE
T ss_conf 211111111111100------------------11111111111112322045543888689998567730012465200
Q ss_pred -----------CCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCC
Q ss_conf -----------851233037888800799826762333334578888888755565566870899807980999927888
Q 000251 460 -----------NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 528 (1784)
Q Consensus 460 -----------~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~ 528 (1784)
.........|...+.... ..+..++++..|+.+++|++.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------------------------~~~~~~~~~~~d~~i~~~d~~~~ 191 (355)
T d1nexb2 140 YPLVFHTPEENPYFVGVLRGHMASVRTVS----------------------------GHGNIVVSGSYDNTLIVWDVAQM 191 (355)
T ss_dssp CCEEESCTTTCTTEEEEEECCSSCEEEEE----------------------------EETTEEEEEETTSCEEEEETTTT
T ss_pred ECCCEECCCCCCCEEEEEEECCCCCCCCC----------------------------CCCCEEEEECCCCEEEEEECCCC
T ss_conf 01000001123401210110022210000----------------------------25633442114420444301311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC
Q ss_conf 88853222112224569999999999999983000589997129998689978999953973999988999459998069
Q 000251 529 RSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH 608 (1784)
Q Consensus 529 ~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~gH 608 (1784)
+ .......+...+.++.|++++.++++++.|+.|++|+..++.++..+.+|
T Consensus 192 ~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h 242 (355)
T d1nexb2 192 K-----------------------------CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 242 (355)
T ss_dssp E-----------------------------EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred C-----------------------------CEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 0-----------------------------00110001233211111121002101245636876301221111111111
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEE-EECCCCCEEEEEECCCEEEEEECCCCCCC
Q ss_conf 99849999905999499999589929999689992289986068535799-99379999999958970999998998311
Q 000251 609 TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG-KFSPDGASIILSDDVGQLYILNTGQGESQ 687 (1784)
Q Consensus 609 ~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~~Itsi-afSPDGk~LAsgs~DG~I~IWdi~sGe~~ 687 (1784)
...|.++++++ .++++++.||.|++||+.++...... |...+..+ .|++++.+|++++ ||.|++|++.+|+.+
T Consensus 243 ~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~ 316 (355)
T d1nexb2 243 TALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV 316 (355)
T ss_dssp SSCCCEEEECS---SEEEEECTTSEEEEEETTTCCEEEEE--ECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBC
T ss_pred CCCCCCCCCCC---CEEEEEECCCCCCCCCCCCCCEECCC--CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEE
T ss_conf 11111112321---00333201111111111111100012--4688229999849998999980-997999999999798
Q ss_pred C
Q ss_conf 3
Q 000251 688 K 688 (1784)
Q Consensus 688 ~ 688 (1784)
.
T Consensus 317 ~ 317 (355)
T d1nexb2 317 H 317 (355)
T ss_dssp C
T ss_pred E
T ss_conf 8
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.6e-36 Score=263.21 Aligned_cols=291 Identities=17% Similarity=0.205 Sum_probs=231.3
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC-CCCCCEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 91899980678985999995799999998489789999899997058841-77885599995279995079999928990
Q 000251 302 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGT 380 (1784)
Q Consensus 302 g~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~l~-gH~~~VtsIafSPdg~~~~~LvSgs~DGt 380 (1784)
|.+.+++.||...|++++|+|++++|++|+.||+|++||+.+++.+..+. +|...|++++|+|++. +++++.|+.
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~----~~~~~~d~~ 77 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD----LFTVSWDDH 77 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC----EEEEETTTE
T ss_pred CCCCEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCE----EECCCCEEE
T ss_conf 8613684888878289999799999999908992999999999688998378877489988403311----210231026
Q ss_pred EEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99993678866552513799973248887888889999976389998779988999408950999738999998999998
Q 000251 381 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 460 (1784)
Q Consensus 381 IrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~ 460 (1784)
+++|+.......... .....+...+.+++|++++.++++++ ++.+.+|+...
T Consensus 78 v~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~---------- 129 (299)
T d1nr0a2 78 LKVVPAGGSGVDSSK-----------------AVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK---------- 129 (299)
T ss_dssp EEEECSSSSSSCTTS-----------------CCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE----------
T ss_pred EEEECCCCCCCCCCC-----------------CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC----------
T ss_conf 887316776201110-----------------00111134432100112211111222-22221111111----------
Q ss_pred CCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 51233037888800799826762333334578888888755565566870899807980999927888888532221122
Q 000251 461 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 540 (1784)
Q Consensus 461 ~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~ 540 (1784)
.... .....+.+++|+|++ ..+++++.||.+.+||+.+...
T Consensus 130 -~~~~--~~~~~~~~~~~s~~~--------------------------~~l~~g~~dg~i~~~d~~~~~~---------- 170 (299)
T d1nr0a2 130 -LTEV--PISYNSSCVALSNDK--------------------------QFVAVGGQDSKVHVYKLSGASV---------- 170 (299)
T ss_dssp -EEEE--ECSSCEEEEEECTTS--------------------------CEEEEEETTSEEEEEEEETTEE----------
T ss_pred -CCCC--CCCCCCCCCCCCCCC--------------------------CCCCCCCCCCCCCCCCCCCCCC----------
T ss_conf -1110--111123322111111--------------------------1111111111111111111111----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE---EEECCCCCEEEEEE
Q ss_conf 245699999999999999830005899971299986899789999539739999889994599---98069998499999
Q 000251 541 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH---SLTGHTESTYVLDV 617 (1784)
Q Consensus 541 ~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~---~L~gH~~~VtsIaf 617 (1784)
.......|...|++++|+|++.+|++++.|+.|++|++.++.... .+.+|...|++++|
T Consensus 171 ------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 232 (299)
T d1nr0a2 171 ------------------SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW 232 (299)
T ss_dssp ------------------EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEE
T ss_pred ------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ------------------11111111111111111111111111111111111111111111111111111111111124
Q ss_pred ECCCCCEEEEEECCCCEEEEECCCCCEEEEEE--CCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 05999499999589929999689992289986--068535799993799999999589709999989
Q 000251 618 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE--ISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 682 (1784)
Q Consensus 618 SPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~--~h~~~ItsiafSPDGk~LAsgs~DG~I~IWdi~ 682 (1784)
+| ++.+|++++.||.|+|||+.++.....+. .+...+....+++++.+|++++.||.|++|++.
T Consensus 233 s~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 233 SP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred CC-CCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCCEEEEEECC
T ss_conf 66-6451388828997999989999731489834898896899997798999999289979999444
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.5e-35 Score=251.28 Aligned_cols=335 Identities=21% Similarity=0.318 Sum_probs=252.2
Q ss_pred EECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEE
Q ss_conf 97778918999806789859999957999999984897899998999970588417788559999527999507999992
Q 000251 297 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 376 (1784)
Q Consensus 297 WDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs 376 (1784)
|+..+.++...|+||.+.|.+ +++++|++||+|+.||+|+|||+.+++++..+.+|.+.|.+++|+|+ +|++++
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~-----~l~s~s 74 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN-----IIISGS 74 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT-----EEEEEE
T ss_pred CCCCCCCCCEEECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-----CCCCCE
T ss_conf 989988758898886875099-99978999999918990999989999799999488999899994798-----632100
Q ss_pred CCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCC
Q ss_conf 89909999367886655251379997324888788888999997638999877998899940895099973899999899
Q 000251 377 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDS 456 (1784)
Q Consensus 377 ~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s 456 (1784)
.|+.+++|+........... .....+....+ ....++.+..|+.+.+|+..++
T Consensus 75 ~D~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~----- 127 (342)
T d2ovrb2 75 TDRTLKVWNAETGECIHTLY--------------------GHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETG----- 127 (342)
T ss_dssp TTSCEEEEETTTTEEEEEEC--------------------CCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSC-----
T ss_pred ECCCCCCCCCCCCCCEECCC--------------------CCCEEEEEEEC--CCCCCCCCCCCEEEEEEECCCC-----
T ss_conf 00011111111000000012--------------------33304765202--4652212344403787403556-----
Q ss_pred CCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCC
Q ss_conf 99985123303788880079982676233333457888888875556556687089980798099992788888853222
Q 000251 457 DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 536 (1784)
Q Consensus 457 ~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~ 536 (1784)
.....+........... .. ...+++++.|+.+++|+.....
T Consensus 128 ----~~~~~~~~~~~~~~~~~--~~--------------------------~~~~~~~~~d~~i~~~d~~~~~------- 168 (342)
T d2ovrb2 128 ----QCLHVLMGHVAAVRCVQ--YD--------------------------GRRVVSGAYDFMVKVWDPETET------- 168 (342)
T ss_dssp ----CEEEEEECCSSCEEEEE--EC--------------------------SSCEEEEETTSCEEEEEGGGTE-------
T ss_pred ----CCEEEEECCCCCCEEEC--CC--------------------------CCEEEEECCCCEEEEEECCCCE-------
T ss_conf ----30011100111100000--13--------------------------3302433589869995252343-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEE
Q ss_conf 11222456999999999999998300058999712999868997899995397399998899945999806999849999
Q 000251 537 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLD 616 (1784)
Q Consensus 537 w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIa 616 (1784)
....+..|...+ ..+++++.++++++.||.|++|++..++++..+.+|...+.++.
T Consensus 169 ----------------------~~~~~~~~~~~~--~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~ 224 (342)
T d2ovrb2 169 ----------------------CLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224 (342)
T ss_dssp ----------------------EEEEECCCSSCE--EEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE
T ss_pred ----------------------EEEEECCCCCCC--CCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEE
T ss_conf ----------------------667872754442--10068999999995899399952556536567416653205770
Q ss_pred EECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCC---CEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCC
Q ss_conf 9059994999995899299996899922899860685---3579999379999999958970999998998311355331
Q 000251 617 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF---RLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYD 693 (1784)
Q Consensus 617 fSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~---~ItsiafSPDGk~LAsgs~DG~I~IWdi~sGe~~~~~~~~ 693 (1784)
+++ .++++++.|+.|++|++...+....+..+.. .+.++ ++++.++++++.||.|++|++.+|+.+......
T Consensus 225 ~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~ 299 (342)
T d2ovrb2 225 LKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL--QFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL 299 (342)
T ss_dssp EET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE--EECSSEEEEEETTSEEEEEETTTCCEEEEEEEC
T ss_pred CCC---CEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECEEEC--CCCCCEEEEECCCCEEEEEECCCCCEEEEEECC
T ss_conf 689---999997489889998655442211122100011010000--137984499908998999999999798998623
Q ss_pred EEECCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCEEEEEECCC-C
Q ss_conf 133179850688147862312211146768878756678888899951001010016622069879998499961899-8
Q 000251 694 QFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFS-L 772 (1784)
Q Consensus 694 ~~fs~D~r~Li~d~~g~Vld~~tql~p~l~~i~~~L~D~~~~p~p~~~q~l~~~r~~gv~~iAfSPDG~~LAvg~d~s-~ 772 (1784)
. ..++...+.+++|+|+|.++|+|..++ .
T Consensus 300 ~--------------------------------------------------~~~~~~~v~~v~~s~~~~~la~g~~dGt~ 329 (342)
T d2ovrb2 300 E--------------------------------------------------SGGSGGVVWRIRASNTKLVCAVGSRNGTE 329 (342)
T ss_dssp T--------------------------------------------------TGGGTCEEEEEEECSSEEEEEEECSSSSS
T ss_pred C--------------------------------------------------CCCCCCCEEEEEECCCCCEEEEEECCCCC
T ss_conf 4--------------------------------------------------78988978999987999899999689997
Q ss_pred CCCEEEECCC
Q ss_conf 8726840179
Q 000251 773 DQGYQLQPLA 782 (1784)
Q Consensus 773 ~~~i~l~~l~ 782 (1784)
+..+.+|++.
T Consensus 330 ~~~l~~~Df~ 339 (342)
T d2ovrb2 330 ETKLLVLDFD 339 (342)
T ss_dssp CCEEEEEECC
T ss_pred EEEEEEEECC
T ss_conf 0489999389
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.7e-36 Score=260.71 Aligned_cols=316 Identities=19% Similarity=0.285 Sum_probs=236.4
Q ss_pred EEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEE
Q ss_conf 99777891899980678985999995799999998489789999899997058841778855999952799950799999
Q 000251 296 IWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 375 (1784)
Q Consensus 296 IWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSg 375 (1784)
.|... .....+|+||.+.|++|+|+|++++||+|+.||+|+|||+.+++.+..+.+|...|.+++|+|++. +++++
T Consensus 2 ~w~p~-~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~---~~~~~ 77 (317)
T d1vyhc1 2 EWIPR-PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK---LLASC 77 (317)
T ss_dssp CCCCC-SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS---EEEEE
T ss_pred CCCCC-CCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCC---CCCCC
T ss_conf 36898-984489858888768999938989999993899299998999979999957888677776301111---01111
Q ss_pred ECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCC
Q ss_conf 28990999936788665525137999732488878888899999763899987799889994089509997389999989
Q 000251 376 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDD 455 (1784)
Q Consensus 376 s~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~ 455 (1784)
..++.+.+|+.........+ ..+...+.++.|++++..+++++.|+.+++|++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----- 132 (317)
T d1vyhc1 78 SADMTIKLWDFQGFECIRTM--------------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT----- 132 (317)
T ss_dssp ETTSCCCEEETTSSCEEECC--------------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-----
T ss_pred CCCCCCCCCCCCCCCCCCCC--------------------CCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCC-----
T ss_conf 11111011100111111110--------------------00000000000169985577652675235751144-----
Q ss_pred CCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCC
Q ss_conf 99998512330378888007998267623333345788888887555655668708998079809999278888885322
Q 000251 456 SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAA 535 (1784)
Q Consensus 456 s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~ 535 (1784)
...+..+.+|...+.+++|++++ ..|++++.|+.+++|++.+.
T Consensus 133 ----~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~l~~~~~d~~v~~~~~~~~------- 175 (317)
T d1vyhc1 133 ----GYCVKTFTGHREWVRMVRPNQDG--------------------------TLIASCSNDQTVRVWVVATK------- 175 (317)
T ss_dssp ----CCEEEEEECCSSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEETTTC-------
T ss_pred ----CEEEEEECCCCCCCEEEECCCCC--------------------------CEEEEEECCCEEEEEEECCC-------
T ss_conf ----30346871677763000016679--------------------------99999927982999751254-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEE
Q ss_conf 21122245699999999999999830005899971299986899789999539739999889994599980699984999
Q 000251 536 RWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 615 (1784)
Q Consensus 536 ~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~VtsI 615 (1784)
.....+..+...+.++.|++++..+...... ... ..
T Consensus 176 ----------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------------------~~~-~~ 211 (317)
T d1vyhc1 176 ----------------------ECKAELREHRHVVECISWAPESSYSSISEAT---------------------GSE-TK 211 (317)
T ss_dssp ----------------------CEEEEECCCSSCEEEEEECCSCGGGGGGGCC---------------------SCC---
T ss_pred ----------------------EEEEEEECCCCCCEEEEEEECCCCCEEECCC---------------------CCE-EE
T ss_conf ----------------------0347882477873379986325641110345---------------------630-34
Q ss_pred EEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCEE
Q ss_conf 99059994999995899299996899922899860685357999937999999995897099999899831135533113
Q 000251 616 DVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQF 695 (1784)
Q Consensus 616 afSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~~ItsiafSPDGk~LAsgs~DG~I~IWdi~sGe~~~~~~~~~~ 695 (1784)
.+.. .+.++++++.|+.|++|++.+++++..+.+|...|.+++|+|++++|++++.||.|++|++.+++.+...
T Consensus 212 ~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----- 285 (317)
T d1vyhc1 212 KSGK-PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL----- 285 (317)
T ss_dssp ------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-----
T ss_pred EECC-CCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE-----
T ss_conf 3025-8861475169978999888999688999688998799998799999999979894999999999199999-----
Q ss_pred ECCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCC
Q ss_conf 31798506881478623122111467688787566788888999510010100166220698799984999618998872
Q 000251 696 FLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQG 775 (1784)
Q Consensus 696 fs~D~r~Li~d~~g~Vld~~tql~p~l~~i~~~L~D~~~~p~p~~~q~l~~~r~~gv~~iAfSPDG~~LAvg~d~s~~~~ 775 (1784)
.+|...+.+++|+|+|.+||++ +.++.
T Consensus 286 --------------------------------------------------~~h~~~V~~~~~s~~~~~l~s~---s~Dg~ 312 (317)
T d1vyhc1 286 --------------------------------------------------NAHEHFVTSLDFHKTAPYVVTG---SVDQT 312 (317)
T ss_dssp --------------------------------------------------ECCSSCEEEEEECSSSSCEEEE---ETTSE
T ss_pred --------------------------------------------------CCCCCCEEEEEECCCCCEEEEE---ECCCE
T ss_conf --------------------------------------------------2899988999994999999999---28994
Q ss_pred EEEEC
Q ss_conf 68401
Q 000251 776 YQLQP 780 (1784)
Q Consensus 776 i~l~~ 780 (1784)
+++|+
T Consensus 313 i~iWd 317 (317)
T d1vyhc1 313 VKVWE 317 (317)
T ss_dssp EEEEC
T ss_pred EEEEC
T ss_conf 99829
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5e-36 Score=259.81 Aligned_cols=351 Identities=12% Similarity=0.111 Sum_probs=240.4
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC--EEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCC
Q ss_conf 78985999995799999998489789999899997--0588417788559999527999507999992899099993678
Q 000251 311 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 388 (1784)
Q Consensus 311 H~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk--~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~t 388 (1784)
...+|+|++|+|++++||+|+.|+.|+||++.+++ .+..+.+|.+.|.+++|+|+++ +|++++.|++|++|++..
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~---~l~s~s~D~~i~vWd~~~ 82 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN---RIVTCGTDRNAYVWTLKG 82 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT---EEEEEETTSCEEEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCC---EEEEEECCCEEEEEEECC
T ss_conf 99883899998999999999488989999888997899999558899888999979999---999997999399986203
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECC
Q ss_conf 86655251379997324888788888999997638999877998899940895099973899999899999851233037
Q 000251 389 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 468 (1784)
Q Consensus 389 g~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~g 468 (1784)
+........ ..+...|.+++|+|+++.|++++.|+.|++|++..... ..........
T Consensus 83 ~~~~~~~~~------------------~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~-----~~~~~~~~~~ 139 (371)
T d1k8kc_ 83 RTWKPTLVI------------------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-----WWVCKHIKKP 139 (371)
T ss_dssp TEEEEEEEC------------------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT-----EEEEEEECTT
T ss_pred CCCCCCCCC------------------CCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCC-----CCCCCCCCCC
T ss_conf 321100122------------------32211000111111121100000257630254420334-----3311100101
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88880079982676233333457888888875556556687089980798099992788888853222112224569999
Q 000251 469 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 548 (1784)
Q Consensus 469 H~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~ 548 (1784)
|...|.+++|+|++ ..|++++.|+++++|++........
T Consensus 140 ~~~~v~~v~~~p~~--------------------------~~l~s~s~D~~v~v~~~~~~~~~~~--------------- 178 (371)
T d1k8kc_ 140 IRSTVLSLDWHPNS--------------------------VLLAAGSCDFKCRIFSAYIKEVEER--------------- 178 (371)
T ss_dssp CCSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEECCCTTTSCC---------------
T ss_pred CCCCCCCCCCCCCC--------------------------CCEECCCCCCEEEEEEECCCCCCCC---------------
T ss_conf 11222111111111--------------------------1100013476799984015764310---------------
Q ss_pred CCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEE
Q ss_conf 99999999998300058999712999868997899995397399998899945999806999849999905999499999
Q 000251 549 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628 (1784)
Q Consensus 549 ~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~lLaSg 628 (1784)
. . ..+.+ .....+.++....+|...|++++|+| ++.+|+++
T Consensus 179 ----------~--------~------~~~~~--------------~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~ 219 (371)
T d1k8kc_ 179 ----------P--------A------PTPWG--------------SKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWV 219 (371)
T ss_dssp ----------C--------C------CBTTB--------------SCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEE
T ss_pred ----------C--------C------CCCCC--------------CCCCCEEEEEECCCCCCCEEEEEEEC-CCCCCCCC
T ss_conf ----------0--------1------22111--------------11111011244047667478987512-33210000
Q ss_pred ECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE--CCCCCCCCCCCCCEEECCCCCCEEEC
Q ss_conf 5899299996899922899860685357999937999999995897099999--89983113553311331798506881
Q 000251 629 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN--TGQGESQKDAKYDQFFLGDYRPLVQD 706 (1784)
Q Consensus 629 s~DG~IrIWDl~tg~~i~tl~~h~~~ItsiafSPDGk~LAsgs~DG~I~IWd--i~sGe~~~~~~~~~~fs~D~r~Li~d 706 (1784)
+.|+.|++||+.++.++..+..+..+|.+++|+||+++|++|. |+.+.+|. ...+..................+
T Consensus 220 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 295 (371)
T d1k8kc_ 220 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL--- 295 (371)
T ss_dssp ETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC-----------
T ss_pred CCCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEEEC-CCCEEEEEEECCCCEEEEEEEECCCCCCCCCCC---
T ss_conf 1478605886410121000001466520365469997999981-992678776089862887202067654212462---
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCC----CEEEEEECCCCCCCEEEECCC
Q ss_conf 4786231221114676887875667888889995100101001662206987999----849996189988726840179
Q 000251 707 TYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSS----LKLAVGPDFSLDQGYQLQPLA 782 (1784)
Q Consensus 707 ~~g~Vld~~tql~p~l~~i~~~L~D~~~~p~p~~~q~l~~~r~~gv~~iAfSPDG----~~LAvg~d~s~~~~i~l~~l~ 782 (1784)
...... ... ...... .. .......+...|...+.++++.|.+ ..+|++ +.++.+++|++.
T Consensus 296 ~~~~~~---~~~-----~~~~~~---~~--~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~---g~Dg~v~iW~~~ 359 (371)
T d1k8kc_ 296 TARERF---QNL-----DKKASS---EG--SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTT---GMDGGMSIWDVR 359 (371)
T ss_dssp CHHHHH---HHC-----CCCC--------------CCCSSSSSSCEEEEEEEESTTTSCSEEEEE---ETTSEEEEEEHH
T ss_pred CCEEEE---ECC-----CCEEEE---EC--CCCCCCEECCCCCCCEEEEEEECCCCCCEEEEEEE---CCCCEEEEEECC
T ss_conf 200168---506-----520587---12--45566141255569889999948998656799999---189939999698
Q ss_pred CCCCC
Q ss_conf 86622
Q 000251 783 DLDVM 787 (1784)
Q Consensus 783 ~~~~l 787 (1784)
+.+..
T Consensus 360 ~~~~~ 364 (371)
T d1k8kc_ 360 SLESA 364 (371)
T ss_dssp HHHHH
T ss_pred CCHHH
T ss_conf 68465
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.9e-33 Score=241.96 Aligned_cols=284 Identities=13% Similarity=0.152 Sum_probs=153.5
Q ss_pred CEEEEEECCCCCEEEEECCCC-EEEEEECCCC--EEEEEEECCC-CCEEEEEECC--CCCEEEEEECCCEEEEEECCCCC
Q ss_conf 789999979999999982874-7999977789--1899980678-9859999957--99999998489789999899997
Q 000251 272 AVYCAIFDRSGRYVITGSDDR-LVKIWSMETA--YCLASCRGHE-GDITDLAVSS--NNALVASASNDCIIRVWRLPDGL 345 (1784)
Q Consensus 272 ~VtsIaFSPDG~~LATGS~DG-tIkIWDi~tg--~~l~tL~gH~-~~VtsIafSP--Dg~lLASGS~DGtIrIWDl~tgk 345 (1784)
.+++++|+|+|+.||.++.+. .|+.|+.... ..+..+.+|. ..|++++|+| ++.+|++|+.||+|+||++..+.
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCC
T ss_conf 84799998997999999699879999768888765028990789998899998117999799999489977985405886
Q ss_pred EEE--------EECCCCCCEEEEEECCCCCCCEEEEEEE--CCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 058--------8417788559999527999507999992--899099993678866552513799973248887888889
Q 000251 346 PIS--------VLRGHTAAVTAIAFSPRPGSVYQLLSSS--DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 415 (1784)
Q Consensus 346 ~i~--------~l~gH~~~VtsIafSPdg~~~~~LvSgs--~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~ 415 (1784)
... .+..|.+.|.+++|++++. +|++++ .++.+.+|+..++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~---~l~~~~~~~~~~~~~~~~~~~~------------------------- 150 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFEGR---RLCVVGEGRDNFGVFISWDSGN------------------------- 150 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSS---EEEEEECCSSCSEEEEETTTCC-------------------------
T ss_pred CEEEEECCCCCCCCCCCCCEEEEEECCCCC---CCCEEECCCCCEEEEEEECCCC-------------------------
T ss_conf 215651002541136567377999899988---2201001244047888502331-------------------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99997638999877998899940895099973899999899999851233037888800799826762333334578888
Q 000251 416 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 495 (1784)
Q Consensus 416 ~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~ 495 (1784)
.+..+.+|...|.++.|++++
T Consensus 151 ----------------------------------------------~~~~~~~h~~~v~~~~~~~~~------------- 171 (325)
T d1pgua1 151 ----------------------------------------------SLGEVSGHSQRINACHLKQSR------------- 171 (325)
T ss_dssp ----------------------------------------------EEEECCSCSSCEEEEEECSSS-------------
T ss_pred ----------------------------------------------CCEEEEECCCCCCCCCCCCCC-------------
T ss_conf ----------------------------------------------100120012343211112343-------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEE
Q ss_conf 88875556556687089980798099992788888853222112224569999999999999983000589997129998
Q 000251 496 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 575 (1784)
Q Consensus 496 ~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIaf 575 (1784)
+..+++++.|+.+++|+....+.. ........+...|.+++|
T Consensus 172 ------------~~~~~~~~~d~~v~~~d~~~~~~~--------------------------~~~~~~~~~~~~v~~v~~ 213 (325)
T d1pgua1 172 ------------PMRSMTVGDDGSVVFYQGPPFKFS--------------------------ASDRTHHKQGSFVRDVEF 213 (325)
T ss_dssp ------------SCEEEEEETTTEEEEEETTTBEEE--------------------------EEECSSSCTTCCEEEEEE
T ss_pred ------------CCEEEEEECCCCCCCCCCCCCCCC--------------------------EECCCCCCCCCCCEEEEE
T ss_conf ------------206888621112211112211000--------------------------000001577775277630
Q ss_pred CCC-CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEE---CCCCCEEEEEECCCCEEEEECCCCCEEEEEECC
Q ss_conf 689-9789999539739999889994599980699984999990---599949999958992999968999228998606
Q 000251 576 SLD-NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH---PFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 651 (1784)
Q Consensus 576 SPD-G~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafS---Pdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h 651 (1784)
+|+ +.+|++++.|+.|++||+.+++++..+.+|...+..+.|+ | ++.+|++++.|+.|+|||+.+++++..+..+
T Consensus 214 ~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~-dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~ 292 (325)
T d1pgua1 214 SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD 292 (325)
T ss_dssp CSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEEEC
T ss_conf 345310000112332101343001222111111111111100000036-8999999958993999999999788999954
Q ss_pred CCC--EEEEEECCC-CCEEEEEECCCEEEEEEC
Q ss_conf 853--579999379-999999958970999998
Q 000251 652 RFR--LVDGKFSPD-GASIILSDDVGQLYILNT 681 (1784)
Q Consensus 652 ~~~--ItsiafSPD-Gk~LAsgs~DG~I~IWdi 681 (1784)
... +..+++.+. +.+|++++.||.|++|++
T Consensus 293 ~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 293 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp TTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf 874067699999889999999979999999979
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.5e-33 Score=239.39 Aligned_cols=316 Identities=12% Similarity=0.049 Sum_probs=205.5
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEE---EEECCCCCEEEEEECCCC-CEEEEEECCCE
Q ss_conf 21789980679878999997999999998287479999777891899---980678985999995799-99999848978
Q 000251 260 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLA---SCRGHEGDITDLAVSSNN-ALVASASNDCI 335 (1784)
Q Consensus 260 ~k~i~tL~GH~~~VtsIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~---tL~gH~~~VtsIafSPDg-~lLASGS~DGt 335 (1784)
|+.++.+++|.+.|++|+|+|++++||+|+.||+|+|||+.++.... ...+|.++|.+++|++++ .+|++|+.|+.
T Consensus 1 ~~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~ 80 (342)
T d1yfqa_ 1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred CCEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCC
T ss_conf 97597688998978889995899999999799929999756998636898855899988999995899978998126531
Q ss_pred EEEEECCCCCEEEEECCCCCCE-EEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 9999899997058841778855-999952799950799999289909999367886655251379997324888788888
Q 000251 336 IRVWRLPDGLPISVLRGHTAAV-TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 414 (1784)
Q Consensus 336 IrIWDl~tgk~i~~l~gH~~~V-tsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s 414 (1784)
|++|++..+........+...+ ....+.++.. .+++++.++++++||++..............
T Consensus 81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~------------- 144 (342)
T d1yfqa_ 81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDD---KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS------------- 144 (342)
T ss_dssp EEEECSSSSSSEEECBSCCCCSCEEEEEEETTT---EEEEEETTSEEEEECHHHHTTBCEEEEESCS-------------
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCEEECCCCCCCEEEECCCCC-------------
T ss_conf 145420443200000111111111111111111---1111012221110202344433023000243-------------
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 99999763899987799889994089509997389999989999985123303788880079982676233333457888
Q 000251 415 AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 494 (1784)
Q Consensus 415 ~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~ 494 (1784)
.........+.+.+.+..+++++.|+.|++|++..... .........+...+.+..+.+..
T Consensus 145 -~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------------ 205 (342)
T d1yfqa_ 145 -NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED------DNGTIEESGLKYQIRDVALLPKE------------ 205 (342)
T ss_dssp -SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT------CCCEEEECSCSSCEEEEEECSGG------------
T ss_pred -CCCCCEEEEEEEECCCCCEEEECCCCCEEEEECCCCCC------CCEEEEECCCCCCEEEEEEECCC------------
T ss_conf -00120000010001687024651798478876056763------41112102542210146763699------------
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEE
Q ss_conf 88887555655668708998079809999278888885322211222456999999999999998300058999712999
Q 000251 495 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 574 (1784)
Q Consensus 495 ~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIa 574 (1784)
...+++++.||.+.+|+................. ..........|...+++++
T Consensus 206 -------------~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~v~~l~ 258 (342)
T d1yfqa_ 206 -------------QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR--------------CHRLNLKDTNLAYPVNSIE 258 (342)
T ss_dssp -------------GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE--------------CCCCCTTCCSSCCCEEEEE
T ss_pred -------------CCEEEEECCCCEEEEEEECCCCCEEECCCCCEEE--------------EEEECCCCCCCCCCCEEEE
T ss_conf -------------9878865489959999805986401112351256--------------5553147776235431599
Q ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 86899789999539739999889994599980699984999990599949999958992999968
Q 000251 575 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639 (1784)
Q Consensus 575 fSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl 639 (1784)
|+|++.+|++|+.||.|++||+.+++.+..+..+ ..+..++|+| ++.++++++.|+.+++|..
T Consensus 259 ~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~-~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIAC-SDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp ECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEE-CSSEEEEEEECTHHHHCSS
T ss_pred ECCCCCEEEEECCCCEEEEEECCCCCEEEEECCC-CCCEEEEEEE-CCCEEEEEECCCCEEEEEE
T ss_conf 6698447999879998999999989498870589-9987999994-7999999991992788301
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.3e-33 Score=239.50 Aligned_cols=260 Identities=16% Similarity=0.248 Sum_probs=198.0
Q ss_pred CCCEEEEEECCCC-CCEEEEEECC--CCCEEEEECCCCEEEEEECCCCEE--------EEEEECCCCCEEEEEECCCCCE
Q ss_conf 3421789980679-8789999979--999999982874799997778918--------9998067898599999579999
Q 000251 258 QKMQNIKRVRGHR-NAVYCAIFDR--SGRYVITGSDDRLVKIWSMETAYC--------LASCRGHEGDITDLAVSSNNAL 326 (1784)
Q Consensus 258 ~~~k~i~tL~GH~-~~VtsIaFSP--DG~~LATGS~DGtIkIWDi~tg~~--------l~tL~gH~~~VtsIafSPDg~l 326 (1784)
.....+..+.||. ..|++++|+| +|.+||+|+.||+|+||++..+.. ...+..|.++|.+++|++++++
T Consensus 50 ~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 129 (325)
T d1pgua1 50 SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR 129 (325)
T ss_dssp CSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSE
T ss_pred CCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 87650289907899988999981179997999994899779854058862156510025411365673779998999882
Q ss_pred EEEEEC--CCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCC
Q ss_conf 999848--978999989999705884177885599995279995079999928990999936788665525137999732
Q 000251 327 VASASN--DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 404 (1784)
Q Consensus 327 LASGS~--DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~ 404 (1784)
|++++. ++.+.+|++.+++.+..+.+|...|.+++|+|++. ..+++++.|+.|++|+....+.......
T Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~~~~~~~d~~v~~~d~~~~~~~~~~~~------- 200 (325)
T d1pgua1 130 LCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRP--MRSMTVGDDGSVVFYQGPPFKFSASDRT------- 200 (325)
T ss_dssp EEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSS--CEEEEEETTTEEEEEETTTBEEEEEECS-------
T ss_pred CCEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCC--CEEEEEECCCCCCCCCCCCCCCCEECCC-------
T ss_conf 2010012440478885023311001200123432111123432--0688862111221111221100000000-------
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCC-CCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCC
Q ss_conf 48887888889999976389998779-98899940895099973899999899999851233037888800799826762
Q 000251 405 AGRNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 483 (1784)
Q Consensus 405 ~g~~~~~~~s~~~h~~~V~sIafSPd-G~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdgl 483 (1784)
...+...|.+++|+|+ +.+|++++.|+.|++||+.+ ...+..+.+|...+..+
T Consensus 201 ----------~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~---------~~~~~~l~~~~~~v~~~------- 254 (325)
T d1pgua1 201 ----------HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS---------GEFLKYIEDDQEPVQGG------- 254 (325)
T ss_dssp ----------SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT---------CCEEEECCBTTBCCCSC-------
T ss_pred ----------CCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECC---------CCCCCCCCCCCCCCCCC-------
T ss_conf ----------1577775277630345310000112332101343001---------22211111111111110-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 33333457888888875556556687089980798099992788888853222112224569999999999999983000
Q 000251 484 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 563 (1784)
Q Consensus 484 as~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l 563 (1784)
T Consensus 255 -------------------------------------------------------------------------------- 254 (325)
T d1pgua1 255 -------------------------------------------------------------------------------- 254 (325)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC--EEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 589997129998689978999953973999988999459998069998--4999990599949999958992999968
Q 000251 564 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES--TYVLDVHPFNPRIAMSAGYDGKTIVWDI 639 (1784)
Q Consensus 564 ~~h~~~VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~--VtsIafSPdd~~lLaSgs~DG~IrIWDl 639 (1784)
+.++.| +++++|++++.|+.|+|||+.+++++..+..|... +..+++.+.+..++++++.||.|+|||+
T Consensus 255 ------~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 255 ------IFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ------EEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ------EEEEEC-CCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf ------000003-68999999958993999999999788999954874067699999889999999979999999979
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-31 Score=226.78 Aligned_cols=280 Identities=21% Similarity=0.400 Sum_probs=189.6
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 21789980679878999997999999998287479999777891899980678985999995799999998489789999
Q 000251 260 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 339 (1784)
Q Consensus 260 ~k~i~tL~GH~~~VtsIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIW 339 (1784)
++.++.+.+|...|+|++| +|++||||+.||+|+|||+.+++++.++.+|.+.|++++| ++++|++|+.|+.|++|
T Consensus 5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 80 (293)
T ss_dssp CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred EEEEECCCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEC--CCCEEECCCCCCCCCCC
T ss_conf 7898432899998899987--6999999928993999999999199999267787763423--63002100111011000
Q ss_pred ECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999705884177885599995279995079999928990999936788665525137999732488878888899999
Q 000251 340 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 419 (1784)
Q Consensus 340 Dl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~ 419 (1784)
++..+........+....... .+... .++++..++.+.+|+............ ...+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 138 (293)
T d1p22a2 81 DVNTGEMLNTLIHHCEAVLHL--RFNNG---MMVTCSKDRSIAVWDMASPTDITLRRV-----------------LVGHR 138 (293)
T ss_dssp ESSSCCEEEEECCCCSCEEEE--ECCTT---EEEEEETTSCEEEEECSSSSCCEEEEE-----------------ECCCS
T ss_pred CCCCCCCCCCCCCCCCCCCCC--CCCCC---CEEECCCCCCEEEEECCCCCCCCCCCC-----------------CCCCC
T ss_conf 002464100111111000011--11110---000013566306861344544421210-----------------00113
Q ss_pred CCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76389998779988999408950999738999998999998512330378888007998267623333345788888887
Q 000251 420 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 499 (1784)
Q Consensus 420 ~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~ 499 (1784)
..+.++.+.+ ..+++++.|+.|++|++.+ ...+..+.++...+..+.+.+
T Consensus 139 ~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~---------~~~~~~~~~~~~~v~~~~~~~------------------- 188 (293)
T d1p22a2 139 AAVNVVDFDD--KYIVSASGDRTIKVWNTST---------CEFVRTLNGHKRGIACLQYRD------------------- 188 (293)
T ss_dssp SCEEEEEEET--TEEEEEETTSEEEEEETTT---------CCEEEEEECCSSCEEEEEEET-------------------
T ss_pred CCCCCCEECC--CCCCCCCCCCCEEEECCCC---------CCEEEEECCCCCCCCCCCCCC-------------------
T ss_conf 5431100000--2201106998604100788---------838899715544532216898-------------------
Q ss_pred CCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCC
Q ss_conf 55565566870899807980999927888888532221122245699999999999999830005899971299986899
Q 000251 500 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 579 (1784)
Q Consensus 500 ~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG 579 (1784)
..+++++.||.|++||+.+.. .......+...+. .+++++
T Consensus 189 ---------~~l~~~~~dg~i~i~d~~~~~-----------------------------~~~~~~~~~~~v~--~~~~~~ 228 (293)
T d1p22a2 189 ---------RLVVSGSSDNTIRLWDIECGA-----------------------------CLRVLEGHEELVR--CIRFDN 228 (293)
T ss_dssp ---------TEEEEEETTSCEEEEETTTCC-----------------------------EEEEECCCSSCEE--EEECCS
T ss_pred ---------CEEEEECCCCEEEEEECCCCE-----------------------------EEEEECCCCEEEE--ECCCCC
T ss_conf ---------758876589989998665561-----------------------------4665214310000--014541
Q ss_pred CEEEEEECCCEEEEEECCC---------CCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 7899995397399998899---------9459998069998499999059994999995899299996
Q 000251 580 RFVLAAIMDCRICVWNAAD---------GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638 (1784)
Q Consensus 580 ~~LaSgs~DGsIrIWDl~t---------gkli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWD 638 (1784)
.+|++++.||.|++||+.. ..++..+.+|.+.|++++|++ .+|++++.||.|+|||
T Consensus 229 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~---~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE---FQIVSSSHDDTILIWD 293 (293)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS---SCEEECCSSSEEEEEC
T ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEECC---CEEEEEECCCEEEEEC
T ss_conf 0799986799799998888864445677545578458899889999719---9999992299899959
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.7e-32 Score=231.73 Aligned_cols=303 Identities=15% Similarity=0.145 Sum_probs=177.1
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCE------EEEEEECCCCCEEEEEEC---C----CCCEEE
Q ss_conf 789980679878999997999999998287479999777891------899980678985999995---7----999999
Q 000251 262 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY------CLASCRGHEGDITDLAVS---S----NNALVA 328 (1784)
Q Consensus 262 ~i~tL~GH~~~VtsIaFSPDG~~LATGS~DGtIkIWDi~tg~------~l~tL~gH~~~VtsIafS---P----Dg~lLA 328 (1784)
.....+||.+.|+++++++ ++|+|++.|++|+||+..+.. .......|...+..+.+. + ++.+++
T Consensus 6 ~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (393)
T d1sq9a_ 6 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 83 (393)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred EEECCCCCCCCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEE
T ss_conf 4520876367127999969--99999979996998789878877654046765420477167666750015799876899
Q ss_pred EEECCCEEEEEECCCCCEEEEE----------CCCCCCEEEEEECCCCC--CCEEEEEEECCCCEEEEECCCCCCCCEEE
Q ss_conf 9848978999989999705884----------17788559999527999--50799999289909999367886655251
Q 000251 329 SASNDCIIRVWRLPDGLPISVL----------RGHTAAVTAIAFSPRPG--SVYQLLSSSDDGTCRIWDARYSQFSPRIY 396 (1784)
Q Consensus 329 SGS~DGtIrIWDl~tgk~i~~l----------~gH~~~VtsIafSPdg~--~~~~LvSgs~DGtIrIWDl~tg~~l~~i~ 396 (1784)
+++.||.|++|++........+ ..+...+..++|.++.. ...++++++.||++.+|++..........
T Consensus 84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~ 163 (393)
T d1sq9a_ 84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 163 (393)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEE
T ss_conf 99489919999822898205651245632431157896689998447886542179998389819998740477534102
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEE
Q ss_conf 37999732488878888899999763899987799889994089509997389999989999985123303788880079
Q 000251 397 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 476 (1784)
Q Consensus 397 l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sI 476 (1784)
.. +.... ..+. ........+...+.++
T Consensus 164 ~~-------------------~~~~~--------------------~~~~--------------~~~~~~~~~~~~~~~v 190 (393)
T d1sq9a_ 164 TL-------------------NWSPT--------------------LELQ--------------GTVESPMTPSQFATSV 190 (393)
T ss_dssp TT-------------------CCCCE--------------------EEEE--------------EEECCSSSSCCCCCEE
T ss_pred EE-------------------EECCC--------------------EECC--------------CCEECCCCCCCCEEEE
T ss_conf 33-------------------10320--------------------0014--------------5100025789867899
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98267623333345788888887555655668708998079809999278888885322211222456999999999999
Q 000251 477 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 556 (1784)
Q Consensus 477 afspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~ 556 (1784)
+|+|++ .|++|+.||+|++||+.+++....
T Consensus 191 ~~s~dg---------------------------~lasgs~Dg~i~iwd~~~~~~~~~----------------------- 220 (393)
T d1sq9a_ 191 DISERG---------------------------LIATGFNNGTVQISELSTLRPLYN----------------------- 220 (393)
T ss_dssp EECTTS---------------------------EEEEECTTSEEEEEETTTTEEEEE-----------------------
T ss_pred EECCCC---------------------------EEEEEECCCCEEEEEECCCCCCCC-----------------------
T ss_conf 978999---------------------------899993898299986023321100-----------------------
Q ss_pred CCCCEECCCCCCCEEEEEECCCCCEEEEEECCC---EEEEEECCCCCEEEEEE-------------CCCCCEEEEEEECC
Q ss_conf 998300058999712999868997899995397---39999889994599980-------------69998499999059
Q 000251 557 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAADGSLVHSLT-------------GHTESTYVLDVHPF 620 (1784)
Q Consensus 557 ~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG---sIrIWDl~tgkli~~L~-------------gH~~~VtsIafSPd 620 (1784)
......+..|...|++++|+|+|++|++|+.|+ .|++||+.+++++..+. +|.+.|++++|+|
T Consensus 221 ~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp- 299 (393)
T d1sq9a_ 221 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND- 299 (393)
T ss_dssp EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-
T ss_pred CCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCC-
T ss_conf 0011111242563877004665320112428988421001035321344431156666431023202358666001389-
Q ss_pred CCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEE----EEEECCCCCEEEEE
Q ss_conf 994999995899299996899922899860685357----99993799999999
Q 000251 621 NPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLV----DGKFSPDGASIILS 670 (1784)
Q Consensus 621 d~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~~It----siafSPDGk~LAsg 670 (1784)
++++|+|++.|++|+|||+.+|+++.++.+|...|. .++|+|+|..++++
T Consensus 300 d~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 300 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred CCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEEC
T ss_conf 888069877999899999999979999988687613773489999999999983
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-31 Score=228.95 Aligned_cols=283 Identities=10% Similarity=0.105 Sum_probs=178.7
Q ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE------EEEECCCCCCEEEEEE----CCCCCCCEEEEEE
Q ss_conf 99806789859999957999999984897899998999970------5884177885599995----2799950799999
Q 000251 306 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP------ISVLRGHTAAVTAIAF----SPRPGSVYQLLSS 375 (1784)
Q Consensus 306 ~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~------i~~l~gH~~~VtsIaf----SPdg~~~~~LvSg 375 (1784)
...++|.+.|.++++++ ++|++++.|++|+||+..+... ......|...+..+.+ ..++.....++++
T Consensus 8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred ECCCCCCCCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEE
T ss_conf 20876367127999969--9999997999699878987887765404676542047716766675001579987689999
Q ss_pred ECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC-----CCEEEEEECCCEEEEECCCC
Q ss_conf 2899099993678866552513799973248887888889999976389998779-----98899940895099973899
Q 000251 376 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-----GTVFVTGSSDTLARVWNACK 450 (1784)
Q Consensus 376 s~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPd-----G~~LaSGs~DGtIrIWDl~t 450 (1784)
+.||.|++|++.............. .......+...+..++|.++ +.++++++.||.+++|++..
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~ 155 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKL----------DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 155 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEE----------CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred ECCCCEEEEECCCCCCEEEEECCCC----------CEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEC
T ss_conf 4899199998228982056512456----------324311578966899984478865421799983898199987404
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCC
Q ss_conf 99989999985123303788880079982676233333457888888875556556687089980798099992788888
Q 000251 451 PNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS 530 (1784)
Q Consensus 451 ~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~ 530 (1784)
.. ........+......+
T Consensus 156 ~~--------~~~~~~~~~~~~~~~~------------------------------------------------------ 173 (393)
T d1sq9a_ 156 FA--------DESNSLTLNWSPTLEL------------------------------------------------------ 173 (393)
T ss_dssp SS--------SHHHHTTTCCCCEEEE------------------------------------------------------
T ss_pred CC--------CCCCEEEEEECCCEEC------------------------------------------------------
T ss_conf 77--------5341023310320001------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE-----
Q ss_conf 853222112224569999999999999983000589997129998689978999953973999988999459998-----
Q 000251 531 HPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL----- 605 (1784)
Q Consensus 531 ~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~~L----- 605 (1784)
.........+...+.+++|+|++ +|++|+.|+.|+|||+.+++++..+
T Consensus 174 --------------------------~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~ 226 (393)
T d1sq9a_ 174 --------------------------QGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHS 226 (393)
T ss_dssp --------------------------EEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC-
T ss_pred --------------------------CCCEECCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCC
T ss_conf --------------------------45100025789867899978999-899993898299986023321100001111
Q ss_pred -ECCCCCEEEEEEECCCCCEEEEEECCCC---EEEEECCCCCEEEEEE-------------CCCCCEEEEEECCCCCEEE
Q ss_conf -0699984999990599949999958992---9999689992289986-------------0685357999937999999
Q 000251 606 -TGHTESTYVLDVHPFNPRIAMSAGYDGK---TIVWDIWEGIPIRIYE-------------ISRFRLVDGKFSPDGASII 668 (1784)
Q Consensus 606 -~gH~~~VtsIafSPdd~~lLaSgs~DG~---IrIWDl~tg~~i~tl~-------------~h~~~ItsiafSPDGk~LA 668 (1784)
.+|...|++++|+| ++++|++|+.|+. |++||+.++.++..+. +|...|++++|+|||++|+
T Consensus 227 l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~ 305 (393)
T d1sq9a_ 227 MINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 305 (393)
T ss_dssp --CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred CCCCCCEEEECCCCC-CCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEE
T ss_conf 124256387700466-5320112428988421001035321344431156666431023202358666001389888069
Q ss_pred EEECCCEEEEEECCCCCCCCCC
Q ss_conf 9958970999998998311355
Q 000251 669 LSDDVGQLYILNTGQGESQKDA 690 (1784)
Q Consensus 669 sgs~DG~I~IWdi~sGe~~~~~ 690 (1784)
+++.|+.|++|++.+|+++..+
T Consensus 306 S~s~D~~v~vWd~~~g~~~~~l 327 (393)
T d1sq9a_ 306 SAGWDGKLRFWDVKTKERITTL 327 (393)
T ss_dssp EEETTSEEEEEETTTTEEEEEE
T ss_pred EECCCCEEEEEECCCCCEEEEE
T ss_conf 8779998999999999799999
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=1.6e-32 Score=235.62 Aligned_cols=335 Identities=14% Similarity=0.065 Sum_probs=245.0
Q ss_pred EEEEECC-CCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC--CEEEEEECCCCCEEEEE
Q ss_conf 9999979-99999998287479999777891899980678985999995799999998489--78999989999705884
Q 000251 274 YCAIFDR-SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND--CIIRVWRLPDGLPISVL 350 (1784)
Q Consensus 274 tsIaFSP-DG~~LATGS~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~D--GtIrIWDl~tgk~i~~l 350 (1784)
+.-.||| ||+++|+++. |.|.+|++.++..++. +|...|.+++|+|||++|++++.+ ..|++|++.++... .+
T Consensus 6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~ 81 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KF 81 (360)
T ss_dssp GEEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-EC
T ss_pred HCCCCCCCCCCEEEEEEC-CEEEEEECCCCCEEEC--CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEE-EE
T ss_conf 005146889999999989-9699998999948991--6999888899989999999999289989999989999488-75
Q ss_pred CCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 17788559999527999507999992899099993678866552513799973248887888889999976389998779
Q 000251 351 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 430 (1784)
Q Consensus 351 ~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPd 430 (1784)
..|...|.+++|+|+++ +|++++.++.+.+|++.++.....+. .+...+.+++|+|+
T Consensus 82 ~~~~~~v~~~~~spdg~---~l~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~spd 138 (360)
T d1k32a3 82 EENLGNVFAMGVDRNGK---FAVVANDRFEIMTVDLETGKPTVIER--------------------SREAMITDFTISDN 138 (360)
T ss_dssp CCCCCSEEEEEECTTSS---EEEEEETTSEEEEEETTTCCEEEEEE--------------------CSSSCCCCEEECTT
T ss_pred ECCCCEEEEEEECCCCC---CCCEECCCCCCCCCCCCCCCEEEEEE--------------------CCCCCCCCHHHCCC
T ss_conf 08971277412114543---21000111110000012221000000--------------------13552023012132
Q ss_pred CCEEEEEE----------CCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98899940----------89509997389999989999985123303788880079982676233333457888888875
Q 000251 431 GTVFVTGS----------SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 500 (1784)
Q Consensus 431 G~~LaSGs----------~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~ 500 (1784)
|++|+.+. .++.+++|++.++ ....+..+...+..+.|+|++
T Consensus 139 g~~la~~~~~~~~~~~~~~~~~~~v~d~~~~----------~~~~~~~~~~~~~~~~~spdg------------------ 190 (360)
T d1k32a3 139 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGR----------KIFAATTENSHDYAPAFDADS------------------ 190 (360)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEETTTT----------EEEECSCSSSBEEEEEECTTS------------------
T ss_pred EEEEEEECCCCCCCEEECCCCCEEEECCCCC----------CEEEECCCCCCCCCCCCCCCC------------------
T ss_conf 2566521233121100025654266304557----------135303543221100125779------------------
Q ss_pred CCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCC
Q ss_conf 55655668708998079809999278888885322211222456999999999999998300058999712999868997
Q 000251 501 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 580 (1784)
Q Consensus 501 ~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~ 580 (1784)
..|++++.++.+.+|+......... .......+..+...+..+.|++++.
T Consensus 191 --------~~l~~~s~~~~~~~~d~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~s~~~~ 240 (360)
T d1k32a3 191 --------KNLYYLSYRSLDPSPDRVVLNFSFE----------------------VVSKPFVIPLIPGSPNPTKLVPRSM 240 (360)
T ss_dssp --------CEEEEEESCCCCCEECSSSSCEECC----------------------SCBEEEEEESSTTCCCGGGCCCGGG
T ss_pred --------CEEEEEECCCCEECCCCCCCCEEEC----------------------CCCCEEEEECCCCCCCCCEECCCCC
T ss_conf --------9999995998557533354402320----------------------3641179852469601206877767
Q ss_pred EEEEEECCC-----EEEEEECCCCCEEEEEECCCCCEEEEEEECCCC--CEEEEEECCCCEEEEECCCCCEEEEEECCCC
Q ss_conf 899995397-----399998899945999806999849999905999--4999995899299996899922899860685
Q 000251 581 FVLAAIMDC-----RICVWNAADGSLVHSLTGHTESTYVLDVHPFNP--RIAMSAGYDGKTIVWDIWEGIPIRIYEISRF 653 (1784)
Q Consensus 581 ~LaSgs~DG-----sIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~--~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~ 653 (1784)
.++++..+. .+..++...+.. ..+..+.+.+..+.+.+.+. .++++++.++.|++||+.+++... +..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~----~~~ 315 (360)
T d1k32a3 241 TSEAGEYDLNDMYKRSSPINVDPGDY-RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE----VKN 315 (360)
T ss_dssp SCCCCCCCCTTGGGGCEECSCCCBCE-EEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE----EEE
T ss_pred CCCCCCEEECCCCCCEEECCCCCCCE-EEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEE----ECC
T ss_conf 15531136526654001012476752-6754138985699997359970699964899879999799974988----648
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCEEECCCCCCEE
Q ss_conf 357999937999999995897099999899831135533113317985068
Q 000251 654 RLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLV 704 (1784)
Q Consensus 654 ~ItsiafSPDGk~LAsgs~DG~I~IWdi~sGe~~~~~~~~~~fs~D~r~Li 704 (1784)
.|.+++|||||++|++++.||.|++|++..++.... ...|++||+
T Consensus 316 ~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~------~~~d~~~~~ 360 (360)
T d1k32a3 316 NLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT------VETDKRPLV 360 (360)
T ss_dssp EEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEE------CCCCSSCEE
T ss_pred CCCEEEECCCCCEEEEEECCCEEEEEECCCCCCCEE------EEECCCCCC
T ss_conf 868799999898999997899499999999985459------984162259
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.7e-32 Score=233.99 Aligned_cols=272 Identities=16% Similarity=0.212 Sum_probs=152.0
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 21789980679878999997999999998287479999777891899980678985999995799999998489789999
Q 000251 260 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 339 (1784)
Q Consensus 260 ~k~i~tL~GH~~~VtsIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIW 339 (1784)
.+++++|.||..+|+|++|+| |+||+.||+|++||+.++ ..+|...|.+++|++++ .+++++.|++|++|
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w 72 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN 72 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred CCEEEEECCCCCCEEEEEECC----EEEEECCCEEEEEECCCC-----CCCCCCCEEEEEECCCC-EEEEEEECCCCCCC
T ss_conf 603499988798649999895----789848991999989998-----88877878999965997-28988610122211
Q ss_pred ECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999705884177885599995279995079999928990999936788665525137999732488878888899999
Q 000251 340 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 419 (1784)
Q Consensus 340 Dl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~ 419 (1784)
++...+ ....+.++++.+++ .++..+.++.+.+|+...+.....+.. .
T Consensus 73 ~~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~ 120 (287)
T d1pgua2 73 GITKHE-------FGSQPKVASANNDG----FTAVLTNDDDLLILQSFTGDIIKSVRL---------------------N 120 (287)
T ss_dssp TEEEEE-------CSSCEEEEEECSSS----EEEEEETTSEEEEEETTTCCEEEEEEC---------------------S
T ss_pred CCCCCC-------CCCCEEEEEECCCC----CEEEEEECCCCEEEECCCEEEEEECCC---------------------C
T ss_conf 111111-------12210146641678----569996033210000110035431012---------------------2
Q ss_pred CCEEEEEECCCCCEEEEEECCC-EEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 7638999877998899940895-099973899999899999851233037888800799826762333334578888888
Q 000251 420 HQIFCCAFNANGTVFVTGSSDT-LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 498 (1784)
Q Consensus 420 ~~V~sIafSPdG~~LaSGs~DG-tIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~ 498 (1784)
. ...++++++..+++++.++ .+++|++... .........+...+.+++|+|++
T Consensus 121 ~--~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~--------~~~~~~~~~~~~~v~~~~~s~~~---------------- 174 (287)
T d1pgua2 121 S--PGSAVSLSQNYVAVGLEEGNTIQVFKLSDL--------EVSFDLKTPLRAKPSYISISPSE---------------- 174 (287)
T ss_dssp S--CEEEEEECSSEEEEEETTTSCEEEEETTEE--------EEEEECSSCCSSCEEEEEECTTS----------------
T ss_pred C--EEEEEECCCCCEEEECCCCCEEEEEECCCC--------CEEEEEEECCCCCEEEEEECCCC----------------
T ss_conf 2--035652147511100022100021000122--------10001210247853699951676----------------
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCC
Q ss_conf 75556556687089980798099992788888853222112224569999999999999983000589997129998689
Q 000251 499 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 578 (1784)
Q Consensus 499 ~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPD 578 (1784)
.+|++++.||.|++||+.++.. .......|...|++++|+|.
T Consensus 175 ----------~~l~~g~~dg~i~i~d~~~~~~----------------------------~~~~~~~h~~~v~~~~~~p~ 216 (287)
T d1pgua2 175 ----------TYIAAGDVMGKILLYDLQSREV----------------------------KTSRWAFRTSKINAISWKPA 216 (287)
T ss_dssp ----------SEEEEEETTSCEEEEETTTTEE----------------------------EECCSCCCSSCEEEEEECCC
T ss_pred ----------CCCCCCCCCCCCCCEEECCCCC----------------------------CCCCCCCCCCCCCEEEECCC
T ss_conf ----------5211011111100000023321----------------------------10001111111100000136
Q ss_pred ----------CCEEEEEECCCEEEEEECCC-CCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf ----------97899995397399998899-94599980699984999990599949999958992999968
Q 000251 579 ----------NRFVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639 (1784)
Q Consensus 579 ----------G~~LaSgs~DGsIrIWDl~t-gkli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl 639 (1784)
+.+|++|+.|+.|++|++.+ ++++..+.+|...|++++|+| ++. +++++.|+.|++|++
T Consensus 217 ~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~~~-l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 217 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PST-LVSSGADACIKRWNV 286 (287)
T ss_dssp C------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TTE-EEEEETTSCEEEEEE
T ss_pred CCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECC-CCE-EEEEECCCEEEEEEE
T ss_conf 5410012678870276649995999888999758999278789858999989-998-999979992999997
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-30 Score=221.97 Aligned_cols=278 Identities=23% Similarity=0.376 Sum_probs=221.5
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEE
Q ss_conf 89998067898599999579999999848978999989999705884177885599995279995079999928990999
Q 000251 304 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383 (1784)
Q Consensus 304 ~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrI 383 (1784)
.+.....|...|+|++| ++++||+|+.||+|+|||+.+++++.++.+|.+.|++++|.+ + +|++++.||.|++
T Consensus 7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~--~---~l~s~s~D~~i~~ 79 (293)
T d1p22a2 7 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE--R---VIITGSSDSTVRV 79 (293)
T ss_dssp CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCS--S---EEEEEETTSCEEE
T ss_pred EEECCCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEECCC--C---EEECCCCCCCCCC
T ss_conf 98432899998899987--699999992899399999999919999926778776342363--0---0210011101100
Q ss_pred EECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCE
Q ss_conf 93678866552513799973248887888889999976389998779988999408950999738999998999998512
Q 000251 384 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 463 (1784)
Q Consensus 384 WDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i 463 (1784)
|++..+........ .......+......++++..++.+.+|+..... .....
T Consensus 80 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 131 (293)
T d1p22a2 80 WDVNTGEMLNTLIH----------------------HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT------DITLR 131 (293)
T ss_dssp EESSSCCEEEEECC----------------------CCSCEEEEECCTTEEEEEETTSCEEEEECSSSS------CCEEE
T ss_pred CCCCCCCCCCCCCC----------------------CCCCCCCCCCCCCCEEECCCCCCEEEEECCCCC------CCCCC
T ss_conf 00024641001111----------------------110000111111000001356630686134454------44212
Q ss_pred EEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 33037888800799826762333334578888888755565566870899807980999927888888532221122245
Q 000251 464 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 543 (1784)
Q Consensus 464 ~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l 543 (1784)
..+..|...+..+.+.+ ..+++++.|+.+++|++.+.+
T Consensus 132 ~~~~~~~~~v~~~~~~~----------------------------~~~~~~s~d~~i~~~d~~~~~-------------- 169 (293)
T d1p22a2 132 RVLVGHRAAVNVVDFDD----------------------------KYIVSASGDRTIKVWNTSTCE-------------- 169 (293)
T ss_dssp EEECCCSSCEEEEEEET----------------------------TEEEEEETTSEEEEEETTTCC--------------
T ss_pred CCCCCCCCCCCCCEECC----------------------------CCCCCCCCCCCEEEECCCCCC--------------
T ss_conf 10001135431100000----------------------------220110699860410078883--------------
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCC
Q ss_conf 69999999999999983000589997129998689978999953973999988999459998069998499999059994
Q 000251 544 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 623 (1784)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~ 623 (1784)
....+..+...+..+.++ +.++++++.|+.|++||+.++..+..+.++...+..+. + +..
T Consensus 170 ---------------~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~--~-~~~ 229 (293)
T d1p22a2 170 ---------------FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR--F-DNK 229 (293)
T ss_dssp ---------------EEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE--C-CSS
T ss_pred ---------------EEEEECCCCCCCCCCCCC--CCEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEECC--C-CCE
T ss_conf ---------------889971554453221689--87588765899899986655614665214310000014--5-410
Q ss_pred EEEEEECCCCEEEEECCC---------CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 999995899299996899---------922899860685357999937999999995897099999
Q 000251 624 IAMSAGYDGKTIVWDIWE---------GIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 680 (1784)
Q Consensus 624 lLaSgs~DG~IrIWDl~t---------g~~i~tl~~h~~~ItsiafSPDGk~LAsgs~DG~I~IWd 680 (1784)
+|++++.||.|++||+.. ..++..+..|...|++++| ++.+|++++.||.|++||
T Consensus 230 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEE--CCCEEEEEECCCEEEEEC
T ss_conf 7999867997999988888644456775455784588998899997--199999992299899959
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-31 Score=229.22 Aligned_cols=273 Identities=13% Similarity=0.106 Sum_probs=213.0
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 89189998067898599999579999999848978999989999705884177885599995279995079999928990
Q 000251 301 TAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 380 (1784)
Q Consensus 301 tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGt 380 (1784)
+.++++++.||..+|++++|+| |++|+.||+|++|++.++ ..+|...|.+++|+++. .+++++.|++
T Consensus 2 ~~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~----~~~s~s~D~~ 68 (287)
T d1pgua2 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ----EYSSISWDDT 68 (287)
T ss_dssp EEEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT----CCEEEETTTE
T ss_pred CCCEEEEECCCCCCEEEEEECC----EEEEECCCEEEEEECCCC-----CCCCCCCEEEEEECCCC----EEEEEEECCC
T ss_conf 9603499988798649999895----789848991999989998-----88877878999965997----2898861012
Q ss_pred EEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99993678866552513799973248887888889999976389998779988999408950999738999998999998
Q 000251 381 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 460 (1784)
Q Consensus 381 IrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~ 460 (1784)
|++|++.... ....+.++++.+++..++++. ++.+.+|+..++
T Consensus 69 v~~w~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------- 111 (287)
T d1pgua2 69 LKVNGITKHE---------------------------FGSQPKVASANNDGFTAVLTN-DDDLLILQSFTG--------- 111 (287)
T ss_dssp EEETTEEEEE---------------------------CSSCEEEEEECSSSEEEEEET-TSEEEEEETTTC---------
T ss_pred CCCCCCCCCC---------------------------CCCCEEEEEECCCCCEEEEEE-CCCCEEEECCCE---------
T ss_conf 2211111111---------------------------122101466416785699960-332100001100---------
Q ss_pred CCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC-CCEEEEECCCCCCCCCCCCCCC
Q ss_conf 512330378888007998267623333345788888887555655668708998079-8099992788888853222112
Q 000251 461 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD-GSAIIWIPRSRRSHPKAARWTQ 539 (1784)
Q Consensus 461 ~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~D-GtIrIWDl~t~~~~~~~~~w~~ 539 (1784)
..+..+.. ...+. ++++++ ..+++++.+ +.+++|++.....
T Consensus 112 ~~~~~~~~-~~~~~--~~~~~~--------------------------~~~~v~~~~~~~v~~~~~~~~~~--------- 153 (287)
T d1pgua2 112 DIIKSVRL-NSPGS--AVSLSQ--------------------------NYVAVGLEEGNTIQVFKLSDLEV--------- 153 (287)
T ss_dssp CEEEEEEC-SSCEE--EEEECS--------------------------SEEEEEETTTSCEEEEETTEEEE---------
T ss_pred EEEEECCC-CCEEE--EEECCC--------------------------CCEEEECCCCCEEEEEECCCCCE---------
T ss_conf 35431012-22035--652147--------------------------51110002210002100012210---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE-EEECCCCCEEEEEEE
Q ss_conf 2245699999999999999830005899971299986899789999539739999889994599-980699984999990
Q 000251 540 AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH-SLTGHTESTYVLDVH 618 (1784)
Q Consensus 540 ~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~-~L~gH~~~VtsIafS 618 (1784)
.......+...+++++|+|++.+|++|+.||.|++||+.++.... .+.+|...|.+++|+
T Consensus 154 -------------------~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~ 214 (287)
T d1pgua2 154 -------------------SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWK 214 (287)
T ss_dssp -------------------EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEEC
T ss_pred -------------------EEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEC
T ss_conf -------------------0012102478536999516765211011111100000023321100011111111000001
Q ss_pred CC---------CCCEEEEEECCCCEEEEECCC-CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 59---------994999995899299996899-9228998606853579999379999999958970999998
Q 000251 619 PF---------NPRIAMSAGYDGKTIVWDIWE-GIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 681 (1784)
Q Consensus 619 Pd---------d~~lLaSgs~DG~IrIWDl~t-g~~i~tl~~h~~~ItsiafSPDGk~LAsgs~DG~I~IWdi 681 (1784)
|. +..++++|+.|+.|+||++.+ +.++..+.+|...|.++.|+|++ .|++++.||.|++|++
T Consensus 215 p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 215 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEEE
T ss_conf 36541001267887027664999599988899975899927878985899998999-8999979992999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.9e-31 Score=223.18 Aligned_cols=299 Identities=10% Similarity=0.041 Sum_probs=216.3
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE---EECCCCCCEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 1899980678985999995799999998489789999899997058---8417788559999527999507999992899
Q 000251 303 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS---VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG 379 (1784)
Q Consensus 303 ~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~---~l~gH~~~VtsIafSPdg~~~~~LvSgs~DG 379 (1784)
+++....+|.+.|++|+|+|++++||+|+.||+|+|||+..+.... ...+|.++|++++|+|++. .+|++|+.||
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~--~~l~sg~~d~ 79 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD--LQIYVGTVQG 79 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSS--EEEEEEETTS
T ss_pred CEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCC--CEEEECCCCC
T ss_conf 75976889989788899958999999997999299997569986368988558999889999958999--7899812653
Q ss_pred CEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCC
Q ss_conf 09999367886655251379997324888788888999997638999877998899940895099973899999899999
Q 000251 380 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQP 459 (1784)
Q Consensus 380 tIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~ 459 (1784)
.|++|++........... .+........+.++...+++++.++.+++||++.....
T Consensus 80 ~v~~w~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~----- 135 (342)
T d1yfqa_ 80 EILKVDLIGSPSFQALTN-------------------NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG----- 135 (342)
T ss_dssp CEEEECSSSSSSEEECBS-------------------CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB-----
T ss_pred CEEEEECCCCCCCCCCCC-------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-----
T ss_conf 114542044320000011-------------------11111111111111111111012221110202344433-----
Q ss_pred CCCEEEECCCC--CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCC
Q ss_conf 85123303788--8800799826762333334578888888755565566870899807980999927888888532221
Q 000251 460 NHEIDVLSGHE--NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 537 (1784)
Q Consensus 460 ~~~i~~l~gH~--~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w 537 (1784)
.........+. .....+.+.+.. ..+++++.|+.|++|++........
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~d~~i~~~~~~~~~~~~~---- 185 (342)
T d1yfqa_ 136 VIAVKNLNSNNTKVKNKIFTMDTNS--------------------------SRLIVGMNNSQVQWFRLPLCEDDNG---- 185 (342)
T ss_dssp CEEEEESCSSSSSSCCCEEEEEECS--------------------------SEEEEEESTTEEEEEESSCCTTCCC----
T ss_pred EEEECCCCCCCCCCEEEEEEEECCC--------------------------CCEEEECCCCCEEEEECCCCCCCCE----
T ss_conf 0230002430012000001000168--------------------------7024651798478876056763411----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEE-ECCCCCEEEEEECCCEEEEEECCCCCEE------E-------
Q ss_conf 1222456999999999999998300058999712999-8689978999953973999988999459------9-------
Q 000251 538 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV-WSLDNRFVLAAIMDCRICVWNAADGSLV------H------- 603 (1784)
Q Consensus 538 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIa-fSPDG~~LaSgs~DGsIrIWDl~tgkli------~------- 603 (1784)
..........+.+.. ++.++..+++++.||.+.+|+....... .
T Consensus 186 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
T d1yfqa_ 186 ----------------------TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243 (342)
T ss_dssp ----------------------EEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred ----------------------EEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEEEEEE
T ss_conf ----------------------1210254221014676369998788654899599998059864011123512565553
Q ss_pred --EEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf --980699984999990599949999958992999968999228998606853579999379999999958970999998
Q 000251 604 --SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 681 (1784)
Q Consensus 604 --~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~~ItsiafSPDGk~LAsgs~DG~I~IWdi 681 (1784)
...+|...|++++|+| ++.+|++|+.||.|+|||+.+++++..+..+ ..+..++|+|+|++|++++.|+.+++|..
T Consensus 244 ~~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 244 NLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred CCCCCCCCCCCEEEEECC-CCCEEEEECCCCEEEEEECCCCCEEEEECCC-CCCEEEEEEECCCEEEEEECCCCEEEEEE
T ss_conf 147776235431599669-8447999879998999999989498870589-99879999947999999991992788301
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.3e-29 Score=215.45 Aligned_cols=350 Identities=11% Similarity=0.030 Sum_probs=215.5
Q ss_pred CCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE-----CCCCCC
Q ss_conf 999999828747999977789189998067898599999579999999848978999989999705884-----177885
Q 000251 282 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL-----RGHTAA 356 (1784)
Q Consensus 282 G~~LATGS~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~l-----~gH~~~ 356 (1784)
+-++++.+.||+|+|||+.+++++.++..|. .+..++|+|||++|++++.|++|++||+.+++..... .+|.+.
T Consensus 32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~ 110 (426)
T d1hzua2 32 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV 110 (426)
T ss_dssp GEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred EEEEEEECCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCE
T ss_conf 0899997599979999999995999996899-803899989999999995899889997568860489998678887645
Q ss_pred EEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 59999527999507999992899099993678866552513799973248887888889999976389998779988999
Q 000251 357 VTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 436 (1784)
Q Consensus 357 VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaS 436 (1784)
+.+++|+||++ +.++++..++.+.+||..++.....+..... ...............+.+++++..++.
T Consensus 111 ~~s~~~spDG~--~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~s~d~~~~~~ 179 (426)
T d1hzua2 111 ESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGM---------TVDTQTYHPEPRVAAIIASHEHPEFIV 179 (426)
T ss_dssp EECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEE---------CSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred EEEEEECCCCC--EEEEEECCCCEEEEECCCCCCEEEEEECCCC---------CCCCEEECCCCCEEEEEECCCCCEEEE
T ss_conf 88500268898--7999635897699985776412578622677---------736436427885038998787878888
Q ss_pred EEC-CCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 408-9509997389999989999985123303788880079982676233333457888888875556556687089980
Q 000251 437 GSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS 515 (1784)
Q Consensus 437 Gs~-DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS 515 (1784)
... .+.+.+++.... .........+...+..+.|+|++ ...+++..
T Consensus 180 ~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g-------------------------~~~~~a~~ 226 (426)
T d1hzua2 180 NVKETGKVLLVNYKDI--------DNLTVTSIGAAPFLADGGWDSSH-------------------------RYFMTAAN 226 (426)
T ss_dssp EETTTTEEEEEECSSS--------SSCEEEEEECCSSEEEEEECTTS-------------------------CEEEEEET
T ss_pred ECCCCCEEEEEEECCC--------CCEEEEEECCCCCCEEEEECCCC-------------------------CEEEEEEE
T ss_conf 5278976999992466--------52045775667753761377888-------------------------67886420
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 79809999278888885322211222456999999999999998300058999712999868997899995397399998
Q 000251 516 RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 595 (1784)
Q Consensus 516 ~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DGsIrIWD 595 (1784)
.+..+.+|+..++......... . .............+...+....++ .|+.+.+|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~-------~-------~~~~~~~~~~~~~~~~~~~~~~~~----------~d~~v~~~~ 282 (426)
T d1hzua2 227 NSNKVAVIDSKDRRLSALVDVG-------K-------TPHPGRGANFVHPKYGPVWSTSHL----------GDGSISLIG 282 (426)
T ss_dssp TCSEEEEEETTTTEEEEEEECS-------S-------CCCCSCCEEEEETTTEEEEEEECT----------TTCEEEEEE
T ss_pred CCCCEEEEECCCCCEEEEECCC-------C-------CCCCCCEEEEECCCCCCEEEECCC----------CCCEEEEEE
T ss_conf 1100000002556278875058-------7-------444342011006987745774157----------896598852
Q ss_pred CC-------CCCEEEEEECCCCCEEEEEEECCCCCEEE-------EEECCCCEEEEECCCCCEEEEEE---------CCC
Q ss_conf 89-------99459998069998499999059994999-------99589929999689992289986---------068
Q 000251 596 AA-------DGSLVHSLTGHTESTYVLDVHPFNPRIAM-------SAGYDGKTIVWDIWEGIPIRIYE---------ISR 652 (1784)
Q Consensus 596 l~-------tgkli~~L~gH~~~VtsIafSPdd~~lLa-------Sgs~DG~IrIWDl~tg~~i~tl~---------~h~ 652 (1784)
.. .++....+.+|...+..++|+| ++++++ ++..|++|+|||+.++++...+. .+.
T Consensus 283 ~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~ 361 (426)
T d1hzua2 283 TDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA 361 (426)
T ss_dssp CCTTTCTTTBTSEEEEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC
T ss_pred CCCCCCCCCCCEEEEEEECCCCCEEEEECCC-CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCC
T ss_conf 2566520330258689866887636787489-986188850679880228879999898787670895021102567788
Q ss_pred CCEEEEEECCCCCEEEEE-----ECCCEEEEEECCCCCCCCCCCCCEEECCCCC
Q ss_conf 535799993799999999-----5897099999899831135533113317985
Q 000251 653 FRLVDGKFSPDGASIILS-----DDVGQLYILNTGQGESQKDAKYDQFFLGDYR 701 (1784)
Q Consensus 653 ~~ItsiafSPDGk~LAsg-----s~DG~I~IWdi~sGe~~~~~~~~~~fs~D~r 701 (1784)
..+..++|||||++|+++ +.+|.|.|||..+++....+.....++|+|.
T Consensus 362 ~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~~~tp~Gk 415 (426)
T d1hzua2 362 KRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTGK 415 (426)
T ss_dssp CCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTTCCSEEEE
T ss_pred CCEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCE
T ss_conf 518987999999999999724888898299999998738999878984199955
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.98 E-value=7.9e-30 Score=216.95 Aligned_cols=352 Identities=13% Similarity=0.024 Sum_probs=228.5
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEE--EEEEE---CCCCCEEEEEECCC
Q ss_conf 34466532234217899806798789999979999999982874799997778918--99980---67898599999579
Q 000251 249 AIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC--LASCR---GHEGDITDLAVSSN 323 (1784)
Q Consensus 249 ~~~~~~~~~~~~k~i~tL~GH~~~VtsIaFSPDG~~LATGS~DGtIkIWDi~tg~~--l~tL~---gH~~~VtsIafSPD 323 (1784)
......|+..+++++++|..|. .+..++|||||++|++++.|+.|.+||+.+++. ...+. +|.+.+.+.+|+||
T Consensus 41 ~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpD 119 (432)
T d1qksa2 41 AGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE 119 (432)
T ss_dssp TTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCT
T ss_pred CCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEECCCCCC
T ss_conf 9979999899983999973799-713799889999999982899978998108981288998448898776984321888
Q ss_pred CCEE-EEEECCCEEEEEECCCCCEEEEECCC-----------CCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCC
Q ss_conf 9999-99848978999989999705884177-----------88559999527999507999992899099993678866
Q 000251 324 NALV-ASASNDCIIRVWRLPDGLPISVLRGH-----------TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 391 (1784)
Q Consensus 324 g~lL-ASGS~DGtIrIWDl~tgk~i~~l~gH-----------~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~ 391 (1784)
|++| +++..++.|++||..+++++..+..+ ......+.++|++. ..+++...++.|.+|+..+.+.
T Consensus 120 G~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~--~~~vs~~~~~~i~~~d~~~~~~ 197 (432)
T d1qksa2 120 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP--EFIVNVKETGKILLVDYTDLNN 197 (432)
T ss_dssp TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS--EEEEEETTTTEEEEEETTCSSE
T ss_pred CCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCC--EEEEEECCCCEEEEEECCCCCC
T ss_conf 88899981789827999076554225402477643522016888505899878999--8999981688299998437875
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC-CCEEEEECCCCCCCCCCCCCCCCEEEEC---
Q ss_conf 552513799973248887888889999976389998779988999408-9509997389999989999985123303---
Q 000251 392 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLS--- 467 (1784)
Q Consensus 392 l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~-DGtIrIWDl~t~~~~~s~~~~~~i~~l~--- 467 (1784)
.....+ .....+..++|+|+|+++++++. ++.+.+++..+.. ....+.
T Consensus 198 ~~~~~i-------------------~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~---------~~~~~~~g~ 249 (432)
T d1qksa2 198 LKTTEI-------------------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK---------LVAIEDTGG 249 (432)
T ss_dssp EEEEEE-------------------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE---------EEEEEECSS
T ss_pred CEEEEE-------------------CCCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCCE---------EEEEECCCC
T ss_conf 227998-------------------3367542653889887999951666367776144526---------888721486
Q ss_pred --CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-ECCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf --78888007998267623333345788888887555655668708998-079809999278888885322211222456
Q 000251 468 --GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC-SRDGSAIIWIPRSRRSHPKAARWTQAYHLK 544 (1784)
Q Consensus 468 --gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSg-S~DGtIrIWDl~t~~~~~~~~~w~~~~~l~ 544 (1784)
.|........+...+ ....+. ..++.+.+|......
T Consensus 250 ~~~~~~~~~~~~~~~~g--------------------------~~~~~~~lg~~~v~~~~~~~~~--------------- 288 (432)
T d1qksa2 250 QTPHPGRGANFVHPTFG--------------------------PVWATSHMGDDSVALIGTDPEG--------------- 288 (432)
T ss_dssp SSBCCTTCEEEEETTTE--------------------------EEEEEEBSSSSEEEEEECCTTT---------------
T ss_pred CCCCCCCCCCEECCCCC--------------------------CEECCCCCCCCEEEECCCCCCC---------------
T ss_conf 22456766410148988--------------------------3102135688358762456655---------------
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCE
Q ss_conf 99999999999999830005899971299986899789999539739999889994599980699984999990599949
Q 000251 545 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRI 624 (1784)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~l 624 (1784)
...+...+....+++++..+++++.+...++|...+.. .|......+++ | +++.
T Consensus 289 ------------------~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-p-Dg~~ 342 (432)
T d1qksa2 289 ------------------HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-F-DIKA 342 (432)
T ss_dssp ------------------CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-E-EGGG
T ss_pred ------------------CCCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCC------CCCCEEEEEEE-E-ECHH
T ss_conf ------------------54656577799886899768887268864102112678------88770359999-9-6246
Q ss_pred EEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEE-----CCCEEEEEECCCCCCCCCCCCCEEECCC
Q ss_conf 99995899299996899922899860685357999937999999995-----8970999998998311355331133179
Q 000251 625 AMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSD-----DVGQLYILNTGQGESQKDAKYDQFFLGD 699 (1784)
Q Consensus 625 LaSgs~DG~IrIWDl~tg~~i~tl~~h~~~ItsiafSPDGk~LAsgs-----~DG~I~IWdi~sGe~~~~~~~~~~fs~D 699 (1784)
+++++.|+.+++|++.++..+ ..|...+..++|||||++|+++. .+|.|.|||..+++..+.+.....++|+
T Consensus 343 la~~s~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~~~~tp~ 419 (432)
T d1qksa2 343 MTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPT 419 (432)
T ss_dssp CCCSSSCCCEEEECHHHHHTC---CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTTCCSEE
T ss_pred HCCCCCCCCEEECCCCCCCCC---CCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEEEEEECCCCCCCCC
T ss_conf 104556784486334344445---78998689767989999999997048888886899999995588684688840897
Q ss_pred CC
Q ss_conf 85
Q 000251 700 YR 701 (1784)
Q Consensus 700 ~r 701 (1784)
|.
T Consensus 420 G~ 421 (432)
T d1qksa2 420 GK 421 (432)
T ss_dssp EE
T ss_pred EE
T ss_conf 06
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=6.7e-29 Score=210.53 Aligned_cols=314 Identities=12% Similarity=0.065 Sum_probs=218.1
Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCC--CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf 53223421789980679878999997999999998287--4799997778918999806789859999957999999984
Q 000251 254 STMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDD--RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS 331 (1784)
Q Consensus 254 ~~~~~~~k~i~tL~GH~~~VtsIaFSPDG~~LATGS~D--GtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS 331 (1784)
.+.......++ + +|...|.+++|+|||++|++++.+ ..|++|++.++... .+..|...|.+++|+|++++|++++
T Consensus 28 v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~ 104 (360)
T d1k32a3 28 IQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVAN 104 (360)
T ss_dssp EECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEE
T ss_pred EEECCCCCEEE-C-CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEE-EEECCCCEEEEEEECCCCCCCCEEC
T ss_conf 99899994899-1-6999888899989999999999289989999989999488-7508971277412114543210001
Q ss_pred CCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEE----------CCCCEEEEECCCCCCCCEEECCCCC
Q ss_conf 897899998999970588417788559999527999507999992----------8990999936788665525137999
Q 000251 332 NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS----------DDGTCRIWDARYSQFSPRIYIPRPS 401 (1784)
Q Consensus 332 ~DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs----------~DGtIrIWDl~tg~~l~~i~l~~~~ 401 (1784)
.++.+++|++.++.....+..|...+.+++|+|+++ +|+.+. .++.+++|++.++......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~---~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~------ 175 (360)
T d1k32a3 105 DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR---FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT------ 175 (360)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC---EEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS------
T ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEE---EEEEECCCCCCCEEECCCCCEEEECCCCCCEEEEC------
T ss_conf 111100000122210000001355202301213225---66521233121100025654266304557135303------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCC
Q ss_conf 73248887888889999976389998779988999408950999738999998999998512330378888007998267
Q 000251 402 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 481 (1784)
Q Consensus 402 ~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspd 481 (1784)
.+...+.+++|+|+|+.|++++.++.+.+|+........ ........+..+...+..+.|+++
T Consensus 176 ---------------~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~ 238 (360)
T d1k32a3 176 ---------------TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSF--EVVSKPFVIPLIPGSPNPTKLVPR 238 (360)
T ss_dssp ---------------CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEEC--CSCBEEEEEESSTTCCCGGGCCCG
T ss_pred ---------------CCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCEEE--CCCCCEEEEECCCCCCCCCEECCC
T ss_conf ---------------543221100125779999999599855753335440232--036411798524696012068777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC---CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6233333457888888875556556687089980798---0999927888888532221122245699999999999999
Q 000251 482 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG---SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGG 558 (1784)
Q Consensus 482 glas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DG---tIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~ 558 (1784)
+. .++++..+. ..++|.+.. ...
T Consensus 239 ~~--------------------------~~~~~~~~~~~~~~~~~~~~~----------------------------~~~ 264 (360)
T d1k32a3 239 SM--------------------------TSEAGEYDLNDMYKRSSPINV----------------------------DPG 264 (360)
T ss_dssp GG--------------------------SCCCCCCCCTTGGGGCEECSC----------------------------CCB
T ss_pred CC--------------------------CCCCCCEEECCCCCCEEECCC----------------------------CCC
T ss_conf 67--------------------------155311365266540010124----------------------------767
Q ss_pred CCEECCCCCCCEEEEEECCC---CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 83000589997129998689---978999953973999988999459998069998499999059994999995899299
Q 000251 559 PRQRILPTPRGVNMIVWSLD---NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 635 (1784)
Q Consensus 559 ~~~~l~~h~~~VtsIafSPD---G~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~Ir 635 (1784)
....+..+...+..+.+... +.++++++.++.|++||+.+++... |.+.|..++|+| +++.|++++.||.|+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~----~~~~v~~~~~Sp-DG~~l~~~~~Dg~i~ 339 (360)
T d1k32a3 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE----VKNNLTDLRLSA-DRKTVMVRKDDGKIY 339 (360)
T ss_dssp CEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE----EEEEEEEEEECT-TSCEEEEEETTSCEE
T ss_pred CEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEE----ECCCCCEEEECC-CCCEEEEEECCCEEE
T ss_conf 526754138985699997359970699964899879999799974988----648868799999-898999997899499
Q ss_pred EEECCCCCEEEEEECCCCCE
Q ss_conf 99689992289986068535
Q 000251 636 VWDIWEGIPIRIYEISRFRL 655 (1784)
Q Consensus 636 IWDl~tg~~i~tl~~h~~~I 655 (1784)
+||+.++....++.....++
T Consensus 340 v~d~~~~~~~~~~~~d~~~~ 359 (360)
T d1k32a3 340 TFPLEKPEDERTVETDKRPL 359 (360)
T ss_dssp EEESSCTTSCEECCCCSSCE
T ss_pred EEECCCCCCCEEEEECCCCC
T ss_conf 99999998545998416225
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=1.2e-28 Score=208.81 Aligned_cols=350 Identities=9% Similarity=-0.007 Sum_probs=211.0
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEE--EE---CCCCCEEEEEECC
Q ss_conf 234466532234217899806798789999979999999982874799997778918999--80---6789859999957
Q 000251 248 YAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS--CR---GHEGDITDLAVSS 322 (1784)
Q Consensus 248 ~~~~~~~~~~~~~k~i~tL~GH~~~VtsIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~t--L~---gH~~~VtsIafSP 322 (1784)
....+..|+..+++.+.+|.+|. .+..++|||||++|++++.|++|++||+.+++.... +. +|.+.+.+++|+|
T Consensus 40 ~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~sp 118 (426)
T d1hzua2 40 DAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY 118 (426)
T ss_dssp TTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTC
T ss_pred CCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEEECC
T ss_conf 99979999999995999996899-80389998999999999589988999756886048999867888764588500268
Q ss_pred CCCEEEEE-ECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCC
Q ss_conf 99999998-48978999989999705884177885599995279995079999928990999936788665525137999
Q 000251 323 NNALVASA-SNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 401 (1784)
Q Consensus 323 Dg~lLASG-S~DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~ 401 (1784)
||++|+++ ..++.+.+||..++.++..+..+...+..+.|.+++. ...++.+.|+...+|.......+.........
T Consensus 119 DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~ 196 (426)
T d1hzua2 119 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR--VAAIIASHEHPEFIVNVKETGKVLLVNYKDID 196 (426)
T ss_dssp TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC--EEEEEECSSSSEEEEEETTTTEEEEEECSSSS
T ss_pred CCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCC--EEEEEECCCCCEEEEECCCCCEEEEEEECCCC
T ss_conf 8987999635897699985776412578622677736436427885--03899878787888852789769999924665
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE-CCCEEEEECCCCCCCCCCCCCCCCEEEEC--CCCCCCEEEEE
Q ss_conf 7324888788888999997638999877998899940-89509997389999989999985123303--78888007998
Q 000251 402 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHEIDVLS--GHENDVNYVQF 478 (1784)
Q Consensus 402 ~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs-~DGtIrIWDl~t~~~~~s~~~~~~i~~l~--gH~~~V~sIaf 478 (1784)
.......++...+..+.|+|++++++++. .+..+.+++..++. .+.... .+........+
T Consensus 197 --------~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 259 (426)
T d1hzua2 197 --------NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR---------LSALVDVGKTPHPGRGANF 259 (426)
T ss_dssp --------SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTE---------EEEEEECSSCCCCSCCEEE
T ss_pred --------CEEEEEECCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCC---------EEEEECCCCCCCCCCEEEE
T ss_conf --------20457756677537613778886788642011000000025562---------7887505874443420110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 26762333334578888888755565566870899807980999927888888532221122245699999999999999
Q 000251 479 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGG 558 (1784)
Q Consensus 479 spdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~ 558 (1784)
...... .-..++.+.|+.+.+|+....... .....
T Consensus 260 ~~~~~~-----------------------~~~~~~~~~d~~v~~~~~~~~~~~----------------------~~~~~ 294 (426)
T d1hzua2 260 VHPKYG-----------------------PVWSTSHLGDGSISLIGTDPKNHP----------------------QYAWK 294 (426)
T ss_dssp EETTTE-----------------------EEEEEECTTTCEEEEEECCTTTCT----------------------TTBTS
T ss_pred ECCCCC-----------------------CEEEECCCCCCEEEEEECCCCCCC----------------------CCCCE
T ss_conf 069877-----------------------457741578965988522566520----------------------33025
Q ss_pred CCEECCCCCCCEEEEEECCCCCEEEE-------EECCCEEEEEECCCCCEEEEEE---------CCCCCEEEEEEECCCC
Q ss_conf 83000589997129998689978999-------9539739999889994599980---------6999849999905999
Q 000251 559 PRQRILPTPRGVNMIVWSLDNRFVLA-------AIMDCRICVWNAADGSLVHSLT---------GHTESTYVLDVHPFNP 622 (1784)
Q Consensus 559 ~~~~l~~h~~~VtsIafSPDG~~LaS-------gs~DGsIrIWDl~tgkli~~L~---------gH~~~VtsIafSPdd~ 622 (1784)
....+.+|...+..++|+|++++|++ +..+++|+|||+.++++..++. .|...|..++|+|++.
T Consensus 295 ~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk 374 (426)
T d1hzua2 295 KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD 374 (426)
T ss_dssp EEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSS
T ss_pred EEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCCEEEEEECCCCC
T ss_conf 86898668876367874899861888506798802288799998987876708950211025677885189879999999
Q ss_pred CEEEEE----ECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEE
Q ss_conf 499999----5899299996899922899860685357999937999999
Q 000251 623 RIAMSA----GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASII 668 (1784)
Q Consensus 623 ~lLaSg----s~DG~IrIWDl~tg~~i~tl~~h~~~ItsiafSPDGk~LA 668 (1784)
++++++ +.++.|+|||..+++....+.+.. .++|+|++.+
T Consensus 375 ~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~ 418 (426)
T d1hzua2 375 EVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFNV 418 (426)
T ss_dssp EEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred EEEEEEECCCCCCCEEEEEECCCCEEEEEECCCC------CCCCCCEEEE
T ss_conf 9999972488889829999999873899987898------4199955757
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.97 E-value=7.5e-28 Score=203.28 Aligned_cols=368 Identities=7% Similarity=-0.086 Sum_probs=230.8
Q ss_pred CCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE--EE---ECCC
Q ss_conf 799999999828747999977789189998067898599999579999999848978999989999705--88---4177
Q 000251 279 DRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI--SV---LRGH 353 (1784)
Q Consensus 279 SPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~i--~~---l~gH 353 (1784)
+++.-++++.+.+|+|.|||..+++++.++..+. .+..++|+|||++|++++.|+.|.+||+.+++.. .. ..+|
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~ 107 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA 107 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCC
T ss_conf 8782899997699979999899983999973799-713799889999999982899978998108981288998448898
Q ss_pred CCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCE
Q ss_conf 88559999527999507999992899099993678866552513799973248887888889999976389998779988
Q 000251 354 TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV 433 (1784)
Q Consensus 354 ~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~ 433 (1784)
.+.+.+.+|+|||+ ++++++..+++|++||..+++....+...... ..............+.++++|..
T Consensus 108 ~~~~~s~~~SpDG~--~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~---------~~~~~~~~~~~~~~v~~s~dg~~ 176 (432)
T d1qksa2 108 RSIETSKMEGWEDK--YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT---------YDEQEYHPEPRVAAILASHYRPE 176 (432)
T ss_dssp EEEEECCSTTCTTT--EEEEEEEETTEEEEEETTTCCEEEEEECCEEC---------TTTCCEESCCCEEEEEECSSSSE
T ss_pred CCEEEECCCCCCCC--EEEEECCCCCEEEEEECCCCCCEEEECCCCCC---------CCCEECCCCCCEEEEEECCCCCE
T ss_conf 77698432188888--89998178982799907655422540247764---------35220168885058998789998
Q ss_pred E-EEEECCCEEEEECCCCCCCCCCCCCCCCEEEE-CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 9-99408950999738999998999998512330-378888007998267623333345788888887555655668708
Q 000251 434 F-VTGSSDTLARVWNACKPNTDDSDQPNHEIDVL-SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 511 (1784)
Q Consensus 434 L-aSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l-~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~L 511 (1784)
+ ++...++.|.+|+..+.. ..... ..+...+..+.|+|++ .++
T Consensus 177 ~~vs~~~~~~i~~~d~~~~~---------~~~~~~i~~g~~~~~~~~spdg--------------------------~~~ 221 (432)
T d1qksa2 177 FIVNVKETGKILLVDYTDLN---------NLKTTEISAERFLHDGGLDGSH--------------------------RYF 221 (432)
T ss_dssp EEEEETTTTEEEEEETTCSS---------EEEEEEEECCSSEEEEEECTTS--------------------------CEE
T ss_pred EEEEECCCCEEEEEECCCCC---------CCEEEEECCCCCCCCCEECCCC--------------------------CEE
T ss_conf 99998168829999843787---------5227998336754265388988--------------------------799
Q ss_pred EE-EECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEE-CCC
Q ss_conf 99-8079809999278888885322211222456999999999999998300058999712999868997899995-397
Q 000251 512 VT-CSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDC 589 (1784)
Q Consensus 512 vS-gS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs-~DG 589 (1784)
++ +..++.+.+++..+.+....... .....+........+...+...++.. .++
T Consensus 222 ~va~~~~~~v~v~d~~~~~~~~~~~~------------------------g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~ 277 (432)
T d1qksa2 222 ITAANARNKLVVIDTKEGKLVAIEDT------------------------GGQTPHPGRGANFVHPTFGPVWATSHMGDD 277 (432)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEEC------------------------SSSSBCCTTCEEEEETTTEEEEEEEBSSSS
T ss_pred EEECCCCCEEEEEECCCCEEEEEECC------------------------CCCCCCCCCCCCEECCCCCCEECCCCCCCC
T ss_conf 99516663677761445268887214------------------------862245676641014898831021356883
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEE
Q ss_conf 39999889994599980699984999990599949999958992999968999228998606853579999379999999
Q 000251 590 RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIIL 669 (1784)
Q Consensus 590 sIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~~ItsiafSPDGk~LAs 669 (1784)
.|.+|...... +..|...+....++| ++..+++++.+..+++|....... +......+++ ||++.|++
T Consensus 278 ~v~~~~~~~~~----~~~~~~~v~~~~~~~-~g~~~~~~s~p~~~~lw~~~~~~~------~~~~~~sv~v-pDg~~la~ 345 (432)
T d1qksa2 278 SVALIGTDPEG----HPDNAWKILDSFPAL-GGGSLFIKTHPNSQYLYVDATLNP------EAEISGSVAV-FDIKAMTG 345 (432)
T ss_dssp EEEEEECCTTT----CTTTBTSEEEEEECS-CSCCCCEECCTTCSEEEEECTTCS------SHHHHTCEEE-EEGGGCCC
T ss_pred EEEECCCCCCC----CCCCCCEEEEEEECC-CCCEEEEEECCCCCCEEECCCCCC------CCCEEEEEEE-EECHHHCC
T ss_conf 58762456655----546565777998868-997688872688641021126788------8770359999-96246104
Q ss_pred EECCCEEEEEECCCCCCCCCCCCCEEECCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 95897099999899831135533113317985068814786231221114676887875667888889995100101001
Q 000251 670 SDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRR 749 (1784)
Q Consensus 670 gs~DG~I~IWdi~sGe~~~~~~~~~~fs~D~r~Li~d~~g~Vld~~tql~p~l~~i~~~L~D~~~~p~p~~~q~l~~~r~ 749 (1784)
++.|+.+.+|++.++..+. .+.
T Consensus 346 ~s~d~~~k~w~~~~~~~l~----------------------------------------------------------~~~ 367 (432)
T d1qksa2 346 DGSDPEFKTLPIAEWAGIT----------------------------------------------------------EGQ 367 (432)
T ss_dssp SSSCCCEEEECHHHHHTCC----------------------------------------------------------SSC
T ss_pred CCCCCCEEECCCCCCCCCC----------------------------------------------------------CCC
T ss_conf 5567844863343444457----------------------------------------------------------899
Q ss_pred CCCCCEEECCCCCEEEEEECC--CCCCCEEEECCCCCCCC
Q ss_conf 662206987999849996189--98872684017986622
Q 000251 750 LGALGIEWRPSSLKLAVGPDF--SLDQGYQLQPLADLDVM 787 (1784)
Q Consensus 750 ~gv~~iAfSPDG~~LAvg~d~--s~~~~i~l~~l~~~~~l 787 (1784)
..+.+++|||||++++++... ..+..+.+|+..+++..
T Consensus 368 ~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~ 407 (432)
T d1qksa2 368 PRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 407 (432)
T ss_dssp CEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEEE
T ss_conf 8689767989999999997048888886899999995588
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.96 E-value=2.7e-23 Score=171.72 Aligned_cols=141 Identities=11% Similarity=0.139 Sum_probs=111.7
Q ss_pred EEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEC
Q ss_conf 99982874799997778918999806789859999957999999-98489789999899997058841778855999952
Q 000251 285 VITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVA-SASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFS 363 (1784)
Q Consensus 285 LATGS~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLA-SGS~DGtIrIWDl~tgk~i~~l~gH~~~VtsIafS 363 (1784)
.++++.|++|.|||+.+++.++++... ..+..++|+|||++|+ +++.++.|++||+.+++.+..+..+. .+..++|+
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~ 82 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVS 82 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEEC
T ss_pred EEEECCCCEEEEEECCCCEEEEEEECC-CCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCC-CCCCCCCC
T ss_conf 999789998999999999599999889-9836999928989999997899989999999894103200024-64311000
Q ss_pred CCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE-EECCCE
Q ss_conf 7999507999992899099993678866552513799973248887888889999976389998779988999-408950
Q 000251 364 PRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT-GSSDTL 442 (1784)
Q Consensus 364 Pdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaS-Gs~DGt 442 (1784)
+++. ..++++..++.+.+|+..++.....+. ....+.+++|+|+|..+++ +..++.
T Consensus 83 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~dg~~~~~~~~~~~~ 139 (301)
T d1l0qa2 83 PDGK--QVYVTNMASSTLSVIDTTSNTVAGTVK---------------------TGKSPLGLALSPDGKKLYVTNNGDKT 139 (301)
T ss_dssp TTSS--EEEEEETTTTEEEEEETTTTEEEEEEE---------------------CSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred CCCC--CCCCCCCCCCEEEECCCCCCEEEEECC---------------------CCCCCEEEEEECCCCEEEEEECCCCC
T ss_conf 1111--111111111001100124302432024---------------------44442378760589715542011110
Q ss_pred EEEECCCC
Q ss_conf 99973899
Q 000251 443 ARVWNACK 450 (1784)
Q Consensus 443 IrIWDl~t 450 (1784)
+.+|+..+
T Consensus 140 ~~~~~~~~ 147 (301)
T d1l0qa2 140 VSVINTVT 147 (301)
T ss_dssp EEEEETTT
T ss_pred EEEEECCC
T ss_conf 01100014
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.95 E-value=6.5e-25 Score=182.97 Aligned_cols=308 Identities=11% Similarity=0.025 Sum_probs=219.7
Q ss_pred EEECCCCCEEEEECCCCEEEEEECCCCEEEEEEE-CCCCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCCEEEEECCC
Q ss_conf 9997999999998287479999777891899980-678985999995799999-99848978999989999705884177
Q 000251 276 AIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSNNALV-ASASNDCIIRVWRLPDGLPISVLRGH 353 (1784)
Q Consensus 276 IaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~-gH~~~VtsIafSPDg~lL-ASGS~DGtIrIWDl~tgk~i~~l~gH 353 (1784)
++|++++++|++++.++.|.|||+.+++++.++. .+...+.+++|+|||+++ +++..++.|.+||+.+++.+..+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCC
T ss_conf 55889996999986999799999999989999994899970459997898999999789993999967567131231036
Q ss_pred C------CCEEEEEECCCCCCCEEEEEEE------------CCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 8------8559999527999507999992------------899099993678866552513799973248887888889
Q 000251 354 T------AAVTAIAFSPRPGSVYQLLSSS------------DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 415 (1784)
Q Consensus 354 ~------~~VtsIafSPdg~~~~~LvSgs------------~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~ 415 (1784)
. ..+..++|+|+++ +++++. .++.+.+|+..++.....+..
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~---~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------------ 140 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGK---EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT------------------ 140 (346)
T ss_dssp CSTTEEEECSSCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE------------------
T ss_pred CCCCCCCCCEEEEEEECCCC---EEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEEE------------------
T ss_conf 54345477417999905888---899970577521565146762489985256326568873------------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99997638999877998899940895099973899999899999851233037888800799826762333334578888
Q 000251 416 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 495 (1784)
Q Consensus 416 ~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~ 495 (1784)
......+..+.+++++.+++.+ +.+.+|++.++ ..+..+..+ .....+.++|++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~------------- 194 (346)
T d1jmxb_ 141 FPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTG---------KYTVALPLR-NWNRKGYSAPDV------------- 194 (346)
T ss_dssp EECCSSCCCEEECTTSCEEEES---SSEEEECTTTC---------CEEEEECST-TCCCTTBCCCBC-------------
T ss_pred EECCCCEEEEEECCCCEEEEEC---CCCEEEECCCC---------CEEEEEECC-CCCCCEEEECCC-------------
T ss_conf 1024743999952787899847---96269980699---------789999648-986623771255-------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEE
Q ss_conf 88875556556687089980798099992788888853222112224569999999999999983000589997129998
Q 000251 496 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 575 (1784)
Q Consensus 496 ~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIaf 575 (1784)
...++....++.+.+++.. ..+
T Consensus 195 ------------~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~ 216 (346)
T d1jmxb_ 195 ------------LYFWPHQSPRHEFSMLYTI----------------------------------------------ARF 216 (346)
T ss_dssp ------------CCCCCCCCTTCEEEEEEEE----------------------------------------------EEC
T ss_pred ------------CEEEEEECCCCCEEEEEEE----------------------------------------------EEE
T ss_conf ------------2899986499816765123----------------------------------------------111
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEE-EECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCC
Q ss_conf 68997899995397399998899945999-80699984999990599949999958992999968999228998606853
Q 000251 576 SLDNRFVLAAIMDCRICVWNAADGSLVHS-LTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR 654 (1784)
Q Consensus 576 SPDG~~LaSgs~DGsIrIWDl~tgkli~~-L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~~ 654 (1784)
......++++..+..+.+|+..++..... +..+...+..+.+++.+..++ ... ++.|.+||+.+++.+..+. ....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~v~d~~~~~~~~~~~-~~~~ 293 (346)
T d1jmxb_ 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI-YGV-LNRLAKYDLKQRKLIKAAN-LDHT 293 (346)
T ss_dssp -------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEE-EEE-ESEEEEEETTTTEEEEEEE-CSSC
T ss_pred CCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEE-EEC-CCEEEEEECCCCCEEEEEC-CCCC
T ss_conf 267325754047834999977788368787631566068889717997899-942-9838999899993999974-9997
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf 5799993799999999589709999989983113553
Q 000251 655 LVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAK 691 (1784)
Q Consensus 655 ItsiafSPDGk~LAsgs~DG~I~IWdi~sGe~~~~~~ 691 (1784)
+.+++|+|||++|++++.+|.|.+||+.+++.++.+.
T Consensus 294 ~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~ 330 (346)
T d1jmxb_ 294 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330 (346)
T ss_dssp CCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE
T ss_conf 7899996899999999489929999996587979998
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=7.8e-24 Score=175.49 Aligned_cols=296 Identities=12% Similarity=0.045 Sum_probs=206.8
Q ss_pred CEEEEECCCCEEEEEECCCCEEEEEEECC--CCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCCEEEEECCCCC----
Q ss_conf 99999828747999977789189998067--8985999995799999-9984897899998999970588417788----
Q 000251 283 RYVITGSDDRLVKIWSMETAYCLASCRGH--EGDITDLAVSSNNALV-ASASNDCIIRVWRLPDGLPISVLRGHTA---- 355 (1784)
Q Consensus 283 ~~LATGS~DGtIkIWDi~tg~~l~tL~gH--~~~VtsIafSPDg~lL-ASGS~DGtIrIWDl~tgk~i~~l~gH~~---- 355 (1784)
++|++++.|+.|.|||+.+++++.++..+ ...+.+++|+|||++| ++++.++.|.+||+.+++.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCC
T ss_conf 69999767998999999999499999877889982379999998999999789994999999999298887247773125
Q ss_pred -CEEEEEECCCCCCCEEEEEEE------------CCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf -559999527999507999992------------8990999936788665525137999732488878888899999763
Q 000251 356 -AVTAIAFSPRPGSVYQLLSSS------------DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 422 (1784)
Q Consensus 356 -~VtsIafSPdg~~~~~LvSgs------------~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V 422 (1784)
.+..++|+|+++ +++++. .+..+.+||..++.....+. ....+
T Consensus 82 ~~~~~v~~s~dg~---~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---------------------~~~~~ 137 (337)
T d1pbyb_ 82 KSLFGAALSPDGK---TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE---------------------APRQI 137 (337)
T ss_dssp ECTTCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE---------------------CCSSC
T ss_pred CCEEEEEECCCCC---EEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECC---------------------CCCCC
T ss_conf 4025489868775---79995047762034203455521203566775988414---------------------56872
Q ss_pred EEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89998779988999408950999738999998999998512330378888007998267623333345788888887555
Q 000251 423 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 502 (1784)
Q Consensus 423 ~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~ 502 (1784)
.+++|+++|.++++++.+ +.+|+..++ .....+..+.. .....+.+++.
T Consensus 138 ~~~~~s~dg~~l~~~~~~--~~~~d~~~~---------~~~~~~~~~~~-~~~~~~~~~~~------------------- 186 (337)
T d1pbyb_ 138 TMLAWARDGSKLYGLGRD--LHVMDPEAG---------TLVEDKPIQSW-EAETYAQPDVL------------------- 186 (337)
T ss_dssp CCEEECTTSSCEEEESSS--EEEEETTTT---------EEEEEECSTTT-TTTTBCCCBCC-------------------
T ss_pred EEEEECCCCCEEEEECCC--CCEEEEECC---------CEEEEEECCCC-CCCCEECCCCC-------------------
T ss_conf 189986888889997177--505663037---------27888614775-43311357763-------------------
Q ss_pred CCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEE
Q ss_conf 65566870899807980999927888888532221122245699999999999999830005899971299986899789
Q 000251 503 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 582 (1784)
Q Consensus 503 ~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~L 582 (1784)
.....+...+...++. .....+...+
T Consensus 187 ------~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~ 212 (337)
T d1pbyb_ 187 ------AVWNQHESSGVMATPF------------------------------------------------YTARKDIDPA 212 (337)
T ss_dssp ------CCCCCCTTTTEEEEEE------------------------------------------------EEEBTTSCTT
T ss_pred ------EEECCCCCCCEEEEEE------------------------------------------------EEEEECCCEE
T ss_conf ------1401466531246632------------------------------------------------4441036604
Q ss_pred EEEECCCEEEEEECCCCCEEE-EEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 999539739999889994599-9806999849999905999499999589929999689992289986068535799993
Q 000251 583 LAAIMDCRICVWNAADGSLVH-SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFS 661 (1784)
Q Consensus 583 aSgs~DGsIrIWDl~tgkli~-~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~~ItsiafS 661 (1784)
..+..++.+.+|+..++.... .+..+...+..+.++| +..+++.+ ++.|++||+.+++.+..+. +...+.+++|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s 288 (337)
T d1pbyb_ 213 DPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVS 288 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEEC
T ss_pred EECCCCCCEEEEECCCCCEEEEEECCCCCCEEEEEECC-CCEEEEEC--CCCEEEEECCCCCEEEEEC-CCCCEEEEEEC
T ss_conf 54036761799986888588898328875058887426-61399973--5528999898896999974-89988999997
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf 799999999589709999989983113553
Q 000251 662 PDGASIILSDDVGQLYILNTGQGESQKDAK 691 (1784)
Q Consensus 662 PDGk~LAsgs~DG~I~IWdi~sGe~~~~~~ 691 (1784)
|||++|++++.+|.|.+||+.+++.++.++
T Consensus 289 ~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 289 TDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp TTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEEEE
T ss_conf 899999999499929999999876989998
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.94 E-value=3.5e-22 Score=164.11 Aligned_cols=315 Identities=10% Similarity=-0.052 Sum_probs=179.5
Q ss_pred ECCCCCCEEEEEECCCCCEEEEE-----CCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE---------
Q ss_conf 80679878999997999999998-----2874799997778918999806789859999957999999984---------
Q 000251 266 VRGHRNAVYCAIFDRSGRYVITG-----SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS--------- 331 (1784)
Q Consensus 266 L~GH~~~VtsIaFSPDG~~LATG-----S~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS--------- 331 (1784)
..++..++.+++++|||++++.. +..+.|.+||..+++.+.++..+... .++|+|||++|++++
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~ 93 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG 93 (373)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCCC
T ss_conf 456789865630189997899973422578765999989999799999579886--079868999899996057753212
Q ss_pred -CCCEEEEEECCCCCEEEEECCCCCCE-------EEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCC
Q ss_conf -89789999899997058841778855-------9999527999507999992899099993678866552513799973
Q 000251 332 -NDCIIRVWRLPDGLPISVLRGHTAAV-------TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 403 (1784)
Q Consensus 332 -~DGtIrIWDl~tgk~i~~l~gH~~~V-------tsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~ 403 (1784)
.++.|.+||+.+++++..+..+.... ..+.|+++++.. ++.....++.+.+|+....+.....
T Consensus 94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~-~v~~~~~~~~~~~~~~~~~~~~~~~-------- 164 (373)
T d2madh_ 94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADL-LFFQFAAGPAVGLVVQGGSSDDQLL-------- 164 (373)
T ss_pred CCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCE-EEEEECCCCCEEEEECCCCEEEEEE--------
T ss_conf 4531899997778938889726885136851689708998589937-9999869874677623687289982--------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCE-EEEEECCCEEEEECCCCCCCCCCCCCCCCEEEEC------CCCCCCEEE
Q ss_conf 248887888889999976389998779988-9994089509997389999989999985123303------788880079
Q 000251 404 VAGRNMAPSSSAGPQSHQIFCCAFNANGTV-FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS------GHENDVNYV 476 (1784)
Q Consensus 404 ~~g~~~~~~~s~~~h~~~V~sIafSPdG~~-LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~------gH~~~V~sI 476 (1784)
....++.++++|.. +++.+.|+.+.+|+...... ..... +.......+
T Consensus 165 ----------------~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 219 (373)
T d2madh_ 165 ----------------SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA---------GAGLVGAMLTAAQNLLTQPA 219 (373)
T ss_pred ----------------CCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEE---------EEEEEEECCCCCCCCEEEEE
T ss_conf ----------------45206999628991999994799399997477426---------67886300366753043458
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98267623333345788888887555655668708998079809999278888885322211222456999999999999
Q 000251 477 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 556 (1784)
Q Consensus 477 afspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~ 556 (1784)
.+.++ ..++..+.++.+.+|+........... + ...
T Consensus 220 ~~~~~---------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~-~----~~~------------ 255 (373)
T d2madh_ 220 QANKS---------------------------GRIVWPVYSGKILQADISAAGATNKAP-I----DAL------------ 255 (373)
T ss_pred EECCC---------------------------CEEEEECCCCEEEEEECCCCEEEEEEE-E----CCC------------
T ss_conf 87899---------------------------429992589659999768990789776-3----056------------
Q ss_pred CCCCEECCCCCCCEEEEEECCCCC----------EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCC-EE
Q ss_conf 998300058999712999868997----------8999953973999988999459998069998499999059994-99
Q 000251 557 GGPRQRILPTPRGVNMIVWSLDNR----------FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR-IA 625 (1784)
Q Consensus 557 ~~~~~~l~~h~~~VtsIafSPDG~----------~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~-lL 625 (1784)
................+++++++. .++....++.+.+||..+++.+..+. +...+..++|+|++.. ++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~ 334 (373)
T d2madh_ 256 SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLY 334 (373)
T ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEE
T ss_conf 475786641367413357714997599954888247862589869999899996989866-8998258999989998999
Q ss_pred EEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 999589929999689992289986068535799993
Q 000251 626 MSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFS 661 (1784)
Q Consensus 626 aSgs~DG~IrIWDl~tg~~i~tl~~h~~~ItsiafS 661 (1784)
++++.|+.|+|||+.+++.++.+..+......+++.
T Consensus 335 vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~ 370 (373)
T d2madh_ 335 ALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVM 370 (373)
T ss_pred EEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEE
T ss_conf 996799929999999998999988889898189984
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.94 E-value=1.4e-21 Score=159.88 Aligned_cols=271 Identities=12% Similarity=0.088 Sum_probs=164.1
Q ss_pred EEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEE-EEEECCCCEEEEECCCCCCCCEEECCCCCCCCCC
Q ss_conf 998489789999899997058841778855999952799950799-9992899099993678866552513799973248
Q 000251 328 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL-LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAG 406 (1784)
Q Consensus 328 ASGS~DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~L-vSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g 406 (1784)
++++.+++|.+||+.+++.+..+... ..+..++|+|+++ +| +++..++.|.+||+.++..+..+..
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~---~l~v~~~~~~~i~v~d~~t~~~~~~~~~--------- 72 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGT---KVYVANAHSNDVSIIDTATNNVIATVPA--------- 72 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSS---EEEEEEGGGTEEEEEETTTTEEEEEEEC---------
T ss_pred EEECCCCEEEEEECCCCEEEEEEECC-CCCEEEEEECCCC---EEEEEECCCCEEEEEECCCCCEEEEEEC---------
T ss_conf 99789998999999999599999889-9836999928989---9999978999899999998941032000---------
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCEEE-EEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCC
Q ss_conf 88788888999997638999877998899-94089509997389999989999985123303788880079982676233
Q 000251 407 RNMAPSSSAGPQSHQIFCCAFNANGTVFV-TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVAS 485 (1784)
Q Consensus 407 ~~~~~~~s~~~h~~~V~sIafSPdG~~La-SGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas 485 (1784)
...+..++|++++..++ ++..++.+.+|+..+ ......+. +.....++.|++++
T Consensus 73 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~dg--- 127 (301)
T d1l0qa2 73 ------------GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTS---------NTVAGTVK-TGKSPLGLALSPDG--- 127 (301)
T ss_dssp ------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---------TEEEEEEE-CSSSEEEEEECTTS---
T ss_pred ------------CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC---------CEEEEECC-CCCCCEEEEEECCC---
T ss_conf ------------246431100011111111111110011001243---------02432024-44442378760589---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 33345788888887555655668708998079809999278888885322211222456999999999999998300058
Q 000251 486 RFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 565 (1784)
Q Consensus 486 ~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 565 (1784)
...++++..++.+.+|+..+.. ......
T Consensus 128 ----------------------~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~ 155 (301)
T d1l0qa2 128 ----------------------KKLYVTNNGDKTVSVINTVTKA------------------------------VINTVS 155 (301)
T ss_dssp ----------------------SEEEEEETTTTEEEEEETTTTE------------------------------EEEEEE
T ss_pred ----------------------CEEEEEECCCCCEEEEECCCCC------------------------------EEEECC
T ss_conf ----------------------7155420111100110001463------------------------------035315
Q ss_pred CCCCEEEEEECCCCCEEEEEECC-CEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEE--ECCCCEEEEECCCC
Q ss_conf 99971299986899789999539-7399998899945999806999849999905999499999--58992999968999
Q 000251 566 TPRGVNMIVWSLDNRFVLAAIMD-CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA--GYDGKTIVWDIWEG 642 (1784)
Q Consensus 566 h~~~VtsIafSPDG~~LaSgs~D-GsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~lLaSg--s~DG~IrIWDl~tg 642 (1784)
+...+..+++++++..++++..+ +.+.+|+.........+..+ ..+..+++++++..+++++ ..++.|.+||+.++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~ 234 (301)
T d1l0qa2 156 VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (301)
T ss_dssp CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred CCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCEEEEECCCCC-CCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCC
T ss_conf 67884288860465401310121111111111100011101335-77503110111101111002100002323656998
Q ss_pred CEEEEEECCCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCCCCCCC
Q ss_conf 22899860685357999937999999-9958970999998998311355
Q 000251 643 IPIRIYEISRFRLVDGKFSPDGASII-LSDDVGQLYILNTGQGESQKDA 690 (1784)
Q Consensus 643 ~~i~tl~~h~~~ItsiafSPDGk~LA-sgs~DG~I~IWdi~sGe~~~~~ 690 (1784)
+++..+.. ...+..++|+|||++|+ ++..++.|.+||+.+++.++.+
T Consensus 235 ~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~ 282 (301)
T d1l0qa2 235 KITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282 (301)
T ss_dssp EEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEEECC-CCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEEE
T ss_conf 19999848-9987799991898999999899996999999999599999
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=9e-21 Score=154.34 Aligned_cols=295 Identities=9% Similarity=-0.038 Sum_probs=197.3
Q ss_pred HHHCCCCCCCCCCCCCCEEEEEECCC--CCCEEEEEECCCCCEE-EEECCCCEEEEEECCCCEEEEEEECCCC-----CE
Q ss_conf 22202344665322342178998067--9878999997999999-9982874799997778918999806789-----85
Q 000251 244 RAACYAIAKPSTMVQKMQNIKRVRGH--RNAVYCAIFDRSGRYV-ITGSDDRLVKIWSMETAYCLASCRGHEG-----DI 315 (1784)
Q Consensus 244 ~s~~~~~~~~~~~~~~~k~i~tL~GH--~~~VtsIaFSPDG~~L-ATGS~DGtIkIWDi~tg~~l~tL~gH~~-----~V 315 (1784)
.+++.......|++++.+.++++..+ ...+.+++|+|||++| ++++.++.|.+||+.+++.+..+..+.. .+
T Consensus 5 vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~ 84 (337)
T d1pbyb_ 5 LAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSL 84 (337)
T ss_dssp EEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECT
T ss_pred EEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCE
T ss_conf 99767998999999999499999877889982379999998999999789994999999999298887247773125402
Q ss_pred EEEEECCCCCEEEEEE------------CCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEE
Q ss_conf 9999957999999984------------8978999989999705884177885599995279995079999928990999
Q 000251 316 TDLAVSSNNALVASAS------------NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383 (1784)
Q Consensus 316 tsIafSPDg~lLASGS------------~DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrI 383 (1784)
..++|+|++++++++. .+..+.+||..++..+..+.. ...+.+++|+|++. ++++++. .+.+
T Consensus 85 ~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~---~l~~~~~--~~~~ 158 (337)
T d1pbyb_ 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGS---KLYGLGR--DLHV 158 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSS---CEEEESS--SEEE
T ss_pred EEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECCC-CCCCEEEEECCCCC---EEEEECC--CCCE
T ss_conf 5489868775799950477620342034555212035667759884145-68721899868888---8999717--7505
Q ss_pred EECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE-CCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 9367886655251379997324888788888999997638999877998899940-895099973899999899999851
Q 000251 384 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHE 462 (1784)
Q Consensus 384 WDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs-~DGtIrIWDl~t~~~~~s~~~~~~ 462 (1784)
||..++.....+..... .....+.+++..+.... ..+...++..
T Consensus 159 ~d~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 203 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSW---------------------EAETYAQPDVLAVWNQHESSGVMATPFY-------------- 203 (337)
T ss_dssp EETTTTEEEEEECSTTT---------------------TTTTBCCCBCCCCCCCCTTTTEEEEEEE--------------
T ss_pred EEEECCCEEEEEECCCC---------------------CCCCEECCCCCEEECCCCCCCEEEEEEE--------------
T ss_conf 66303727888614775---------------------4331135776314014665312466324--------------
Q ss_pred EEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 23303788880079982676233333457888888875556556687089980798099992788888853222112224
Q 000251 463 IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 542 (1784)
Q Consensus 463 i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~ 542 (1784)
...... ..+..+..++.+.+|+..++..
T Consensus 204 --------------~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~------------ 231 (337)
T d1pbyb_ 204 --------------TARKDI--------------------------DPADPTAYRTGLLTMDLETGEM------------ 231 (337)
T ss_dssp --------------EEBTTS--------------------------CTTSGGGEEEEEEEEETTTCCE------------
T ss_pred --------------EEEECC--------------------------CEEEECCCCCCEEEEECCCCCE------------
T ss_conf --------------441036--------------------------6045403676179998688858------------
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCC
Q ss_conf 56999999999999998300058999712999868997899995397399998899945999806999849999905999
Q 000251 543 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 622 (1784)
Q Consensus 543 l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~ 622 (1784)
.......+...+..+.+++++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+| ++
T Consensus 232 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG 291 (337)
T d1pbyb_ 232 ----------------AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DG 291 (337)
T ss_dssp ----------------EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TS
T ss_pred ----------------EEEEECCCCCCEEEEEECCCCEEEEEC--CCCEEEEECCCCCEEEEEC-CCCCEEEEEECC-CC
T ss_conf ----------------889832887505888742661399973--5528999898896999974-899889999978-99
Q ss_pred CEEEEEECCCCEEEEECCCCCEEEEEECC
Q ss_conf 49999958992999968999228998606
Q 000251 623 RIAMSAGYDGKTIVWDIWEGIPIRIYEIS 651 (1784)
Q Consensus 623 ~lLaSgs~DG~IrIWDl~tg~~i~tl~~h 651 (1784)
++|++++.|+.|+|||+.+++.+..+...
T Consensus 292 ~~l~v~~~~~~i~v~D~~t~~~v~~i~~~ 320 (337)
T d1pbyb_ 292 STVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp CEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred CEEEEEECCCCEEEEECCCCCEEEEEECC
T ss_conf 99999949992999999987698999889
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=3.9e-21 Score=156.85 Aligned_cols=316 Identities=12% Similarity=-0.000 Sum_probs=188.1
Q ss_pred CEEEEEECCCCCEEEEE-----CCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCEE
Q ss_conf 78999997999999998-----2874799997778918999806789859999957999999984----------89789
Q 000251 272 AVYCAIFDRSGRYVITG-----SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS----------NDCII 336 (1784)
Q Consensus 272 ~VtsIaFSPDG~~LATG-----S~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS----------~DGtI 336 (1784)
++...+.+|||++++.. ..+..|.+||..+++.+.++..+... .++|+|||++|++.+ .++.|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEECCCCCCCCCCCCCEE
T ss_conf 717476589999999982664777671999999999499999899998--569948999999996777642015899989
Q ss_pred EEEECCCCCEEEEECCCCC-------CEEEEEECCCCCCCEEEEEE--ECCCCEEEEECCCCCCCCEEECCCCCCCCCCC
Q ss_conf 9998999970588417788-------55999952799950799999--28990999936788665525137999732488
Q 000251 337 RVWRLPDGLPISVLRGHTA-------AVTAIAFSPRPGSVYQLLSS--SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 407 (1784)
Q Consensus 337 rIWDl~tgk~i~~l~gH~~-------~VtsIafSPdg~~~~~LvSg--s~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~ 407 (1784)
++||+.+++.+..+..+.. ....++|+|+++ +++.+ +.+..+.+|+..++.....+..+......
T Consensus 81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 154 (355)
T d2bbkh_ 81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK---TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF--- 154 (355)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS---EEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEE---
T ss_pred EEEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCC---EEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEE---
T ss_conf 99999999798898058864031179873499933887---157732798820454305788376677058740473---
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCEEEEEE-CCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCC
Q ss_conf 8788888999997638999877998899940-895099973899999899999851233037888800799826762333
Q 000251 408 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 486 (1784)
Q Consensus 408 ~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs-~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~ 486 (1784)
.......+.+++++..+++.. .++.+.+++..... ..+...+....+.+.+
T Consensus 155 ----------~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~---- 206 (355)
T d2bbkh_ 155 ----------PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH--------------PEDEFLINHPAYSQKA---- 206 (355)
T ss_dssp ----------EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS--------------CTTSCBCSCCEEETTT----
T ss_pred ----------ECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCC--------------CEECCEEEECCCCCCC----
T ss_conf ----------069963699938999899983478737999624333--------------0001106102153899----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 33457888888875556556687089980798099992788888853222112224569999999999999983000589
Q 000251 487 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 566 (1784)
Q Consensus 487 ~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 566 (1784)
..++.++.++.+.+|++..+........... ..........
T Consensus 207 ----------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ 247 (355)
T d2bbkh_ 207 ----------------------GRLVWPTYTGKIHQIDLSSGDAKFLPAVEAL-----------------TEAERADGWR 247 (355)
T ss_dssp ----------------------TEEEEEBTTSEEEEEECTTSSCEECCCEESS-----------------CHHHHHTTEE
T ss_pred ----------------------CEEEEECCCCEEEEEECCCCCEEEEECCCCC-----------------CCCEEEEEEE
T ss_conf ----------------------7388746998299996589907998445784-----------------4126854330
Q ss_pred CCCEEEEEECCCCCEEEEEECC----------CEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCC-EEEEEECCCCEE
Q ss_conf 9971299986899789999539----------73999988999459998069998499999059994-999995899299
Q 000251 567 PRGVNMIVWSLDNRFVLAAIMD----------CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR-IAMSAGYDGKTI 635 (1784)
Q Consensus 567 ~~~VtsIafSPDG~~LaSgs~D----------GsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~-lLaSgs~DG~Ir 635 (1784)
......+++++++..++....+ ..|.+||..+++.+..+.. ...+.+++|+|++.. ++++++.|+.|.
T Consensus 248 p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~ 326 (355)
T d2bbkh_ 248 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLY 326 (355)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred CCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECC-CCCEEEEEECCCCCEEEEEEECCCCEEE
T ss_conf 351089998079976788740687126517997599986788849899668-9987799992899969999978999899
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 9968999228998606853579999379
Q 000251 636 VWDIWEGIPIRIYEISRFRLVDGKFSPD 663 (1784)
Q Consensus 636 IWDl~tg~~i~tl~~h~~~ItsiafSPD 663 (1784)
+||+.+++.++++.........+.+.++
T Consensus 327 v~D~~tg~~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 327 IHDAESGEELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp EEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred EEECCCCCEEEEEECCCCCCCEEEECCC
T ss_conf 9999999899999286979658996999
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.90 E-value=4e-21 Score=156.80 Aligned_cols=105 Identities=7% Similarity=0.022 Sum_probs=60.6
Q ss_pred EEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC-CCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEE
Q ss_conf 9995799999998489789999899997058841-778855999952799950799999289909999367886655251
Q 000251 318 LAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY 396 (1784)
Q Consensus 318 IafSPDg~lLASGS~DGtIrIWDl~tgk~i~~l~-gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~ 396 (1784)
++|++++++|++++.++.|.+||+.+++.+.++. .+...+.+++|+||++ ..++++..++.|.+||+.+++....+.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~--~l~v~~~~~~~v~~~d~~t~~~~~~~~ 79 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR--TAYVLNNHYGDIYGIDLDTCKNTFHAN 79 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSS--EEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCC--EEEEEECCCCCEEEEECCCCEEEEEEC
T ss_conf 558899969999869997999999999899999948999704599978989--999997899939999675671312310
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 379997324888788888999997638999877998899940
Q 000251 397 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 438 (1784)
Q Consensus 397 l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs 438 (1784)
...... .....+..++|+|||++++++.
T Consensus 80 ~~~~~~--------------~~~~~~~~v~~s~DG~~l~v~~ 107 (346)
T d1jmxb_ 80 LSSVPG--------------EVGRSMYSFAISPDGKEVYATV 107 (346)
T ss_dssp SCCSTT--------------EEEECSSCEEECTTSSEEEEEE
T ss_pred CCCCCC--------------CCCCCEEEEEEECCCCEEEEEE
T ss_conf 365434--------------5477417999905888899970
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.89 E-value=9.1e-19 Score=140.50 Aligned_cols=300 Identities=9% Similarity=-0.043 Sum_probs=173.5
Q ss_pred CCCCCEEEEEECCCCCEEEEE-----ECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEE--------
Q ss_conf 678985999995799999998-----4897899998999970588417788559999527999507999992--------
Q 000251 310 GHEGDITDLAVSSNNALVASA-----SNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS-------- 376 (1784)
Q Consensus 310 gH~~~VtsIafSPDg~lLASG-----S~DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs-------- 376 (1784)
.+.+++.+++++||++.+++. +..+.|.+||..+++.+..+..+... .++|+||++ +|+++.
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~---~l~va~~~~~~~~~ 92 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGS---EFALASTSFSRIAK 92 (373)
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCC---EEEEEEECCCCCCC
T ss_conf 6789865630189997899973422578765999989999799999579886--079868999---89999605775321
Q ss_pred --CCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE--CCCEEEEECCCCCC
Q ss_conf --89909999367886655251379997324888788888999997638999877998899940--89509997389999
Q 000251 377 --DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS--SDTLARVWNACKPN 452 (1784)
Q Consensus 377 --~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs--~DGtIrIWDl~t~~ 452 (1784)
.++.|.+||..+++....+..+...... .......+.|+++++.+++.. .++.+.+|+....
T Consensus 93 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~-------------~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~- 158 (373)
T d2madh_ 93 GKRTDYVEVFDPVTFLPIADIELPDAPRFD-------------VGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGS- 158 (373)
T ss_pred CCCCEEEEEEECCCCCEEEEEECCCCCEEE-------------ECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCC-
T ss_conf 245318999977789388897268851368-------------516897089985899379999869874677623687-
Q ss_pred CCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCC
Q ss_conf 98999998512330378888007998267623333345788888887555655668708998079809999278888885
Q 000251 453 TDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHP 532 (1784)
Q Consensus 453 ~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~ 532 (1784)
....+.....++.+++++ ...+++.+.|+.+.+|+........
T Consensus 159 ------------~~~~~~~~~~~~~~s~~g-------------------------~~~~v~~~~dg~~~~~~~~~~~~~~ 201 (373)
T d2madh_ 159 ------------SDDQLLSSPTCYHIHPGA-------------------------PSTFYLLCAQGGLAKTDHAGGAAGA 201 (373)
T ss_pred ------------EEEEEECCCEEEEEECCC-------------------------CCEEEEECCCCEEEEEECCCCEEEE
T ss_conf ------------289982452069996289-------------------------9199999479939999747742667
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE--EECCC-
Q ss_conf 322211222456999999999999998300058999712999868997899995397399998899945999--80699-
Q 000251 533 KAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS--LTGHT- 609 (1784)
Q Consensus 533 ~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~~--L~gH~- 609 (1784)
.... .............+.+++++.++ ..+.++.+.+|+...+..... +..+.
T Consensus 202 ~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 257 (373)
T d2madh_ 202 GLVG-----------------------AMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISAAGATNKAPIDALSG 257 (373)
T ss_pred EEEE-----------------------ECCCCCCCCEEEEEEECCCCEEE-EECCCCEEEEEECCCCEEEEEEEECCCCC
T ss_conf 8863-----------------------00366753043458878994299-92589659999768990789776305647
Q ss_pred ---------CCEEEEEEECCCC---------CEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEE--EE
Q ss_conf ---------9849999905999---------499999589929999689992289986068535799993799999--99
Q 000251 610 ---------ESTYVLDVHPFNP---------RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASI--IL 669 (1784)
Q Consensus 610 ---------~~VtsIafSPdd~---------~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~~ItsiafSPDGk~L--As 669 (1784)
.....++++++.. ..+++...++.+.+||+.+++.+..+. +...+..++|+|||+.+ ++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt 336 (373)
T d2madh_ 258 GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYAL 336 (373)
T ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEEE
T ss_conf 5786641367413357714997599954888247862589869999899996989866-899825899998999899999
Q ss_pred EECCCEEEEEECCCCCCCCCC
Q ss_conf 958970999998998311355
Q 000251 670 SDDVGQLYILNTGQGESQKDA 690 (1784)
Q Consensus 670 gs~DG~I~IWdi~sGe~~~~~ 690 (1784)
++.++.|++||+.+|+.++.+
T Consensus 337 ~~~d~~v~v~D~~tg~~~~~~ 357 (373)
T d2madh_ 337 SAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ECCCCEEEEEECCCCCEEEEE
T ss_conf 679992999999999899998
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=8e-18 Score=133.95 Aligned_cols=146 Identities=8% Similarity=0.118 Sum_probs=98.3
Q ss_pred EEEEECCCCEEEEEECCCCEEEEEE--ECCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEEE---CCCCCCE
Q ss_conf 9999828747999977789189998--06789859999957999999984-8978999989999705884---1778855
Q 000251 284 YVITGSDDRLVKIWSMETAYCLASC--RGHEGDITDLAVSSNNALVASAS-NDCIIRVWRLPDGLPISVL---RGHTAAV 357 (1784)
Q Consensus 284 ~LATGS~DGtIkIWDi~tg~~l~tL--~gH~~~VtsIafSPDg~lLASGS-~DGtIrIWDl~tgk~i~~l---~gH~~~V 357 (1784)
.+++++.+++|+||++.+...+..+ ..|.+.+..|+|+|||++|++++ .|+.|.+|++........+ ..+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 99987899938999983999769999975799886899958979999997789969999996898707985301369985
Q ss_pred EEEEECCCCCCCEEEEEEE-CCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 9999527999507999992-899099993678866552513799973248887888889999976389998779988999
Q 000251 358 TAIAFSPRPGSVYQLLSSS-DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 436 (1784)
Q Consensus 358 tsIafSPdg~~~~~LvSgs-~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaS 436 (1784)
..++|+|+++ +|++++ .++.|.+|+............ ..+...+.++.++|+++.+++
T Consensus 86 ~~l~~spDg~---~l~v~~~~~~~v~~~~~~~~~~~~~~~~------------------~~~~~~~~~v~~s~d~~~~~~ 144 (333)
T d1ri6a_ 86 THISTDHQGQ---FVFVGSYNAGNVSVTRLEDGLPVGVVDV------------------VEGLDGCHSANISPDNRTLWV 144 (333)
T ss_dssp SEEEECTTSS---EEEEEETTTTEEEEEEEETTEEEEEEEE------------------ECCCTTBCCCEECTTSSEEEE
T ss_pred EEEEECCCCC---EEEECCCCCCCEEEECCCCCCCEECCCC------------------CCCCCCCEEEEEEECCEEEEC
T ss_conf 4999959998---8742056888302200111000000100------------------377853149886301013102
Q ss_pred EEC-CCEEEEECCCC
Q ss_conf 408-95099973899
Q 000251 437 GSS-DTLARVWNACK 450 (1784)
Q Consensus 437 Gs~-DGtIrIWDl~t 450 (1784)
++. +..|.+|+...
T Consensus 145 ~~~~~~~i~~~~~~~ 159 (333)
T d1ri6a_ 145 PALKQDRICLFTVSD 159 (333)
T ss_dssp EEGGGTEEEEEEECT
T ss_pred CCCCCCEEEEEEECC
T ss_conf 565542056897326
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=9.5e-19 Score=140.36 Aligned_cols=297 Identities=13% Similarity=0.045 Sum_probs=183.1
Q ss_pred CEEEEEECCCCCEEEEEE-----CCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEE----------ECC
Q ss_conf 859999957999999984-----89789999899997058841778855999952799950799999----------289
Q 000251 314 DITDLAVSSNNALVASAS-----NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS----------SDD 378 (1784)
Q Consensus 314 ~VtsIafSPDg~lLASGS-----~DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSg----------s~D 378 (1784)
++...+.+||++.+++.. .+..|.+||..+++.+..+..+..+ .++|+||++ +|+++ ..|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~---~l~v~~~~~~~~~~g~~d 77 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGS---FIAHASTVFSRIARGERT 77 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSS---CEEEEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCC---EEEEEECCCCCCCCCCCC
T ss_conf 717476589999999982664777671999999999499999899998--569948999---999996777642015899
Q ss_pred CCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE--CCCEEEEECCCCCCCCCC
Q ss_conf 909999367886655251379997324888788888999997638999877998899940--895099973899999899
Q 000251 379 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS--SDTLARVWNACKPNTDDS 456 (1784)
Q Consensus 379 GtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs--~DGtIrIWDl~t~~~~~s 456 (1784)
+.|.+||+.+++....+........ ........++|+++|..+++.. .+..+.+|+..++
T Consensus 78 ~~v~v~D~~t~~~~~~~~~~~~~~~-------------~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~----- 139 (355)
T d2bbkh_ 78 DYVEVFDPVTLLPTADIELPDAPRF-------------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK----- 139 (355)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCC-------------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-----
T ss_pred CEEEEEECCCCCEEEEEECCCCCEE-------------ECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCC-----
T ss_conf 9899999999979889805886403-------------1179873499933887157732798820454305788-----
Q ss_pred CCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCC
Q ss_conf 99985123303788880079982676233333457888888875556556687089980798099992788888853222
Q 000251 457 DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 536 (1784)
Q Consensus 457 ~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~ 536 (1784)
..+..+..+.... .+ +.+ ....+..+.||...++.............
T Consensus 140 ----~~~~~~~~~~~~~---~~-~~~-------------------------~~~~~~~~~dg~~~~v~~~~~~~~~~~~~ 186 (355)
T d2bbkh_ 140 ----AFKRMLDVPDCYH---IF-PTA-------------------------PDTFFMHCRDGSLAKVAFGTEGTPEITHT 186 (355)
T ss_dssp ----EEEEEEECCSEEE---EE-EEE-------------------------TTEEEEEETTSCEEEEECCSSSCCEEEEC
T ss_pred ----CEEEEEECCCCCE---EE-ECC-------------------------CCCEEEECCCCCEEEEEECCCCEEEEEEC
T ss_conf ----3766770587404---73-069-------------------------96369993899989998347873799962
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE--EEECCC-----
Q ss_conf 1122245699999999999999830005899971299986899789999539739999889994599--980699-----
Q 000251 537 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH--SLTGHT----- 609 (1784)
Q Consensus 537 w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~--~L~gH~----- 609 (1784)
......+...+....+++++..++.++.++.+++|++..+.... ...++.
T Consensus 187 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 243 (355)
T d2bbkh_ 187 -----------------------EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA 243 (355)
T ss_dssp -----------------------CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred -----------------------CCCCCEECCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEE
T ss_conf -----------------------433300011061021538997388746998299996589907998445784412685
Q ss_pred -----CCEEEEEEECCCCCEEEEEEC---------CCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCE--EEEEECC
Q ss_conf -----984999990599949999958---------992999968999228998606853579999379999--9999589
Q 000251 610 -----ESTYVLDVHPFNPRIAMSAGY---------DGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGAS--IILSDDV 673 (1784)
Q Consensus 610 -----~~VtsIafSPdd~~lLaSgs~---------DG~IrIWDl~tg~~i~tl~~h~~~ItsiafSPDGk~--LAsgs~D 673 (1784)
.....+++++++..+++.... ...|.+||..+++.+..+. ....+.+++|+|||+. ++++..+
T Consensus 244 ~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d 322 (355)
T d2bbkh_ 244 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGD 322 (355)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTT
T ss_pred EEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEEEECCC
T ss_conf 433035108999807997678874068712651799759998678884989966-8998779999289996999997899
Q ss_pred CEEEEEECCCCCCCCCC
Q ss_conf 70999998998311355
Q 000251 674 GQLYILNTGQGESQKDA 690 (1784)
Q Consensus 674 G~I~IWdi~sGe~~~~~ 690 (1784)
+.|.+||+.+|+.++.+
T Consensus 323 ~~i~v~D~~tg~~~~~i 339 (355)
T d2bbkh_ 323 KTLYIHDAESGEELRSV 339 (355)
T ss_dssp TEEEEEETTTCCEEEEE
T ss_pred CEEEEEECCCCCEEEEE
T ss_conf 98999999999899999
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=9.5e-18 Score=133.45 Aligned_cols=284 Identities=11% Similarity=0.093 Sum_probs=145.3
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEE--CCCCCCEEEEEECCCCCCCEEE-EEEECCCCEEEEECCCCCCCCEEECCCCCC
Q ss_conf 9999848978999989999705884--1778855999952799950799-999289909999367886655251379997
Q 000251 326 LVASASNDCIIRVWRLPDGLPISVL--RGHTAAVTAIAFSPRPGSVYQL-LSSSDDGTCRIWDARYSQFSPRIYIPRPSD 402 (1784)
Q Consensus 326 lLASGS~DGtIrIWDl~tgk~i~~l--~gH~~~VtsIafSPdg~~~~~L-vSgs~DGtIrIWDl~tg~~l~~i~l~~~~~ 402 (1784)
.+++++.+++|++|++.....+..+ ..+.+.+..|+|+||++ +| +++..|+.|.+|++............
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~---~L~v~~~~d~~i~~~~i~~~~~~~~~~~~---- 78 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR---YLYVGVRPEFRVLAYRIAPDDGALTFAAE---- 78 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSS---EEEEEETTTTEEEEEEECTTTCCEEEEEE----
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCC---EEEEEECCCCEEEEEEEECCCCCEEEEEE----
T ss_conf 99987899938999983999769999975799886899958979---99999778996999999689870798530----
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC-CCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCC
Q ss_conf 3248887888889999976389998779988999408-950999738999998999998512330378888007998267
Q 000251 403 AVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 481 (1784)
Q Consensus 403 ~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~-DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspd 481 (1784)
......+..++|+|||++|++++. ++.|.+|+..... .........+...+.++.++++
T Consensus 79 -------------~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~s~d 138 (333)
T d1ri6a_ 79 -------------SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-------PVGVVDVVEGLDGCHSANISPD 138 (333)
T ss_dssp -------------EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTE-------EEEEEEEECCCTTBCCCEECTT
T ss_pred -------------CCCCCCCEEEEECCCCCEEEECCCCCCCEEEECCCCCC-------CEECCCCCCCCCCCEEEEEEEC
T ss_conf -------------13699854999959998874205688830220011100-------0000100377853149886301
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-ECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 623333345788888887555655668708998-0798099992788888853222112224569999999999999983
Q 000251 482 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC-SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 560 (1784)
Q Consensus 482 glas~~~~~~s~~~~~~~~~~~~~~~~~~LvSg-S~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~ 560 (1784)
+ ..++++ ..+..+.+|+........... ..
T Consensus 139 ~--------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------------------~~ 169 (333)
T d1ri6a_ 139 N--------------------------RTLWVPALKQDRICLFTVSDDGHLVAQD-----------------------PA 169 (333)
T ss_dssp S--------------------------SEEEEEEGGGTEEEEEEECTTSCEEEEE-----------------------EE
T ss_pred C--------------------------EEEECCCCCCCEEEEEEECCCCCCEEEE-----------------------CE
T ss_conf 0--------------------------1310256554205689732687410010-----------------------00
Q ss_pred EECCCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCC----EEEEEE------CCCCCEEEEEEECCCCCEEEEEE
Q ss_conf 00058999712999868997899995-39739999889994----599980------69998499999059994999995
Q 000251 561 QRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADGS----LVHSLT------GHTESTYVLDVHPFNPRIAMSAG 629 (1784)
Q Consensus 561 ~~l~~h~~~VtsIafSPDG~~LaSgs-~DGsIrIWDl~tgk----li~~L~------gH~~~VtsIafSPdd~~lLaSgs 629 (1784)
............++|++++.+++... ..+...+|+..... ....+. ........+++++++..+++++.
T Consensus 170 ~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~ 249 (333)
T d1ri6a_ 170 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR 249 (333)
T ss_dssp EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred EEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCEEEECC
T ss_conf 13340388752799960201478620466721788510355520210022343068776553126899515672055045
Q ss_pred CCCCEEEEECCCCCEEEEEE---CCCCCEEEEEECCCCCEEEEEE-CCCEEEEEEC--CCCC
Q ss_conf 89929999689992289986---0685357999937999999995-8970999998--9983
Q 000251 630 YDGKTIVWDIWEGIPIRIYE---ISRFRLVDGKFSPDGASIILSD-DVGQLYILNT--GQGE 685 (1784)
Q Consensus 630 ~DG~IrIWDl~tg~~i~tl~---~h~~~ItsiafSPDGk~LAsgs-~DG~I~IWdi--~sGe 685 (1784)
.++.+.+|++........+. .....+..++|+|||++|++++ .++.|.+|++ .+|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~ 311 (333)
T d1ri6a_ 250 TASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL 311 (333)
T ss_dssp TTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred CCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCC
T ss_conf 68827878873999789999996789976289990798999999889993999999799996
|
| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=4.3e-20 Score=149.66 Aligned_cols=102 Identities=16% Similarity=0.270 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 78899997852023211124332334435788534489888988999984416679988999999999985401069995
Q 000251 1675 LLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNT 1754 (1784)
Q Consensus 1675 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~~s 1754 (1784)
..+.+..++.....+..+++|..|++...+|+|+++|+.||||+||++||+++.|.++++|..||++||.||.+||+++|
T Consensus 4 ~~~~l~~il~~l~~~~~a~pF~~pvd~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s 83 (111)
T d1e6ia_ 4 HDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENT 83 (111)
T ss_dssp THHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCHHCCCHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 79999999999986988713148999021708898858804198999998736124299999999999999999879999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8999999999999999825999
Q 000251 1755 DLSTKIKRLSDLVTRTLSSLKA 1776 (1784)
Q Consensus 1755 ~~~~~a~~l~~~~~~~l~~~~~ 1776 (1784)
.++.+|..|++.|.+.++++++
T Consensus 84 ~i~~~A~~l~~~f~~~~~~ipe 105 (111)
T d1e6ia_ 84 SYYKYANRLEKFFNNKVKEIPE 105 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999997310
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.81 E-value=3.9e-16 Score=122.29 Aligned_cols=389 Identities=9% Similarity=0.020 Sum_probs=205.4
Q ss_pred EEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEC-----CCCCEEEEEECCCCCEEEEEEC---------CCEEEEEE
Q ss_conf 999979999999982874799997778918999806-----7898599999579999999848---------97899998
Q 000251 275 CAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG-----HEGDITDLAVSSNNALVASASN---------DCIIRVWR 340 (1784)
Q Consensus 275 sIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~g-----H~~~VtsIafSPDg~lLASGS~---------DGtIrIWD 340 (1784)
.+.|.+++.++.. .++.|.+||+.+++....+.. |...|.++.||||+++|+.++. ++.+.+||
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEECCCCEEEEE--CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEE
T ss_conf 7896899979997--59949999889997899970156443167654059989889799997771000104673499998
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99997058841778855999952799950799999289909999367886655251379997324888788888999997
Q 000251 341 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 420 (1784)
Q Consensus 341 l~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~ 420 (1784)
+.+++ +..+..+...+..+.|+|||+ .++.. .++.+.+|+..++................+.... ........
T Consensus 99 ~~~~~-~~~l~~~~~~~~~~~~SPDG~---~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~--~~~~~~~~ 171 (470)
T d2bgra1 99 LNKRQ-LITEERIPNNTQWVTWSPVGH---KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDW--VYEEEVFS 171 (470)
T ss_dssp TTTTE-ECCSSCCCTTEEEEEECSSTT---CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCH--HHHHHTSS
T ss_pred CCCCC-CCCCCCCCCCCCCCCCCCCCC---EEEEE-ECCCCEEEECCCCCEEEEEECCCCCCCCCCCCCE--EEEEEECC
T ss_conf 98885-131246874231010146764---13575-1464137988999465321014777405354320--11210047
Q ss_pred CEEEEEECCCCCEEEEEECCCE-EEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6389998779988999408950-999738999998999998512330378888007998267623333345788888887
Q 000251 421 QIFCCAFNANGTVFVTGSSDTL-ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 499 (1784)
Q Consensus 421 ~V~sIafSPdG~~LaSGs~DGt-IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~ 499 (1784)
....+.|+|||+.|+....|.. +..|.+..... .......+..+.+...+
T Consensus 172 ~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~------------~~~~~~~~~~~~~~~~g----------------- 222 (470)
T d2bgra1 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD------------ESLQYPKTVRVPYPKAG----------------- 222 (470)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS------------TTCSSCEEEEEECCBTT-----------------
T ss_pred CCCCCEECCCCCCCCEEEECCCCCCEEEEEEECC------------CCCCCCEEEEECCCCCC-----------------
T ss_conf 7653079999872202686377670699876604------------77788713540366545-----------------
Q ss_pred CCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCC
Q ss_conf 55565566870899807980999927888888532221122245699999999999999830005899971299986899
Q 000251 500 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 579 (1784)
Q Consensus 500 ~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG 579 (1784)
....+..+.+|++.+........... .............+..+.|.+++
T Consensus 223 -------------~~~~~~~~~v~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~w~~~~ 271 (470)
T d2bgra1 223 -------------AVNPTVKFFVVNTDSLSSVTNATSIQ------------------ITAPASMLIGDHYLCDVTWATQE 271 (470)
T ss_dssp -------------SCCCEEEEEEEEGGGCCSSSCCCEEE------------------ECCCHHHHTSCEEEEEEEEEETT
T ss_pred -------------CCCCCCEEEEEECCCCCEEEECCCCC------------------CCCCCCCCCCCCEEEEEEECCCC
T ss_conf -------------46886257999988861455203322------------------47863347898667788876878
Q ss_pred CEEEEEEC-CC-----EEEEEECCCCCEEEEEE-------------CCCCCEEEEEEECCCC-CEEEEEECCCCEEEE--
Q ss_conf 78999953-97-----39999889994599980-------------6999849999905999-499999589929999--
Q 000251 580 RFVLAAIM-DC-----RICVWNAADGSLVHSLT-------------GHTESTYVLDVHPFNP-RIAMSAGYDGKTIVW-- 637 (1784)
Q Consensus 580 ~~LaSgs~-DG-----sIrIWDl~tgkli~~L~-------------gH~~~VtsIafSPdd~-~lLaSgs~DG~IrIW-- 637 (1784)
..++.... .+ .+..+|..++....... .+... ...+.+.+. .+++.+..||...||
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~s~~dg~~~ly~~ 349 (470)
T d2bgra1 272 RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS--EPHFTLDGNSFYKIISNEEGYRHICYF 349 (470)
T ss_dssp EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC--CCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCEEECCCCC--CCEEEECCCCCEEEEECCCCCCEEEEE
T ss_conf 334787304688159999996188894789998751466214335313577--724542378847987436757645999
Q ss_pred ECCCCCEEEEEECCCCCEEEEEECCCCCEEE-EEECCC----E--EEEEECCCCCCCCCCCCCEEECCCCCCEEECCCCC
Q ss_conf 6899922899860685357999937999999-995897----0--99999899831135533113317985068814786
Q 000251 638 DIWEGIPIRIYEISRFRLVDGKFSPDGASII-LSDDVG----Q--LYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGN 710 (1784)
Q Consensus 638 Dl~tg~~i~tl~~h~~~ItsiafSPDGk~LA-sgs~DG----~--I~IWdi~sGe~~~~~~~~~~fs~D~r~Li~d~~g~ 710 (1784)
+.. +.....+..+...|..+ ++++++.+. ++..++ . |+-.++..+.....
T Consensus 350 ~~~-g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~--------------------- 406 (470)
T d2bgra1 350 QID-KKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTC--------------------- 406 (470)
T ss_dssp ETT-CSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEE---------------------
T ss_pred ECC-CCCEEEECCCCEEEEEE-EEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEE---------------------
T ss_conf 526-87304511698048787-8977999999995689983517999998889986057---------------------
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCCEEEECCCCCCCC
Q ss_conf 23122111467688787566788888999510010100166220698799984999618998872684017986622
Q 000251 711 VLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVM 787 (1784)
Q Consensus 711 Vld~~tql~p~l~~i~~~L~D~~~~p~p~~~q~l~~~r~~gv~~iAfSPDG~~LAvg~d~s~~~~i~l~~l~~~~~l 787 (1784)
| +.....+..+...++|||||++++..........+.++...+++.+
T Consensus 407 ------------------l------------t~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v 453 (470)
T d2bgra1 407 ------------------L------------SCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGL 453 (470)
T ss_dssp ------------------S------------STTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEE
T ss_pred ------------------E------------CCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEE
T ss_conf ------------------0------------3543588898799999989999999832899981999998999899
|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=9.1e-20 Score=147.38 Aligned_cols=110 Identities=16% Similarity=0.332 Sum_probs=98.2
Q ss_pred CCHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 79256677788999978-52023211124332334435788534489888988999984416679988999999999985
Q 000251 1667 IDDDNRNKLLSAFAKLE-QSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSN 1745 (1784)
Q Consensus 1667 id~e~r~kl~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~N 1745 (1784)
++.+....+..++..+. +....++++|+|..||+...+|+|+++|+.||||+||++||+++.|+++++|..||++||+|
T Consensus 2 ~~~~~~~~~~~il~~l~~~~~~~~p~a~pF~~pVd~~~~PdY~~vIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 81 (128)
T d1eqfa2 2 LDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILAN 81 (128)
T ss_dssp GGCHHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 88427899999999999999871998770147999000768898848810399999999863246389999999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 4010699958999999999999999825999
Q 000251 1746 AESYFGRNTDLSTKIKRLSDLVTRTLSSLKA 1776 (1784)
Q Consensus 1746 a~~fN~~~s~~~~~a~~l~~~~~~~l~~~~~ 1776 (1784)
|..||++++.++++|+.|.+.|.+.+++++.
T Consensus 82 a~~yN~~~s~i~~~A~~L~~~~~~~l~~~~~ 112 (128)
T d1eqfa2 82 SVKYNGPESQYTKTAQEIVNVCYQTLTEYDE 112 (128)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998799999999999999999999999698
|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.2e-19 Score=146.67 Aligned_cols=101 Identities=14% Similarity=0.267 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 77788999978520232111243323344357885344898889889999844166799889999999999854010699
Q 000251 1673 NKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGR 1752 (1784)
Q Consensus 1673 ~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~ 1752 (1784)
+.|+..+.+++.....++.+++|..|++...+|+|+++|+.||||+||++||+++.|+++++|..||++||.||.+||++
T Consensus 1 d~L~~~l~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 80 (102)
T d3d7ca1 1 DQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPP 80 (102)
T ss_dssp HHHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 95999999999999809997722788996667678988089468999998760676377999999999999999998799
Q ss_pred CCHHHHHHHHHHHHHHHHHHC
Q ss_conf 958999999999999999825
Q 000251 1753 NTDLSTKIKRLSDLVTRTLSS 1773 (1784)
Q Consensus 1753 ~s~~~~~a~~l~~~~~~~l~~ 1773 (1784)
+|.++++|..|+++|.++|++
T Consensus 81 ~s~~~~~A~~l~~~f~~~~ke 101 (102)
T d3d7ca1 81 DSEYCRCASALEKFFYFKLKE 101 (102)
T ss_dssp TSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999736
|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: P300/CAF histone acetyltransferase bromodomain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=9.8e-20 Score=147.17 Aligned_cols=104 Identities=14% Similarity=0.269 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 77788999978520232111243323344357885344898889889999844166799889999999999854010699
Q 000251 1673 NKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGR 1752 (1784)
Q Consensus 1673 ~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~ 1752 (1784)
+++...+..+++....++.+++|..+++....|+|+++|+.||||+||++||+++.|+++++|..||++||.||.+||++
T Consensus 12 ~~l~~~l~~il~~l~~~~~a~~F~~pv~~~~~pdY~~iI~~PmdL~~I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yn~~ 91 (118)
T d1wuma1 12 DQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPP 91 (118)
T ss_dssp HHHHHHHHHHHHHHHHSSSCHHHHSCCCSSSSSSCTTTCSSCCCHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999958996815688996457688988387420999999760466576689999999999999998799
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 958999999999999999825999
Q 000251 1753 NTDLSTKIKRLSDLVTRTLSSLKA 1776 (1784)
Q Consensus 1753 ~s~~~~~a~~l~~~~~~~l~~~~~ 1776 (1784)
++.++..|..|+++|.+.++++++
T Consensus 92 ~s~~~~~A~~l~~~f~~~~~e~~l 115 (118)
T d1wuma1 92 ESEYYKCANILEKFFFSKIKEAGL 115 (118)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999999998656
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.79 E-value=6e-17 Score=127.92 Aligned_cols=123 Identities=12% Similarity=-0.102 Sum_probs=74.0
Q ss_pred CCCEEEEEECCCCCEEE---EECC--CCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCC
Q ss_conf 98789999979999999---9828--74799997778918999806789859999957999999984----------897
Q 000251 270 RNAVYCAIFDRSGRYVI---TGSD--DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS----------NDC 334 (1784)
Q Consensus 270 ~~~VtsIaFSPDG~~LA---TGS~--DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS----------~DG 334 (1784)
.+....++..++++... +... +..|.+||..+++.+.++.++... .++|+|||+.|++.+ .|+
T Consensus 19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~ 96 (368)
T d1mdah_ 19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTD 96 (368)
T ss_dssp CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 79866645589876126972045788621799708998377888578777--5139899988999755676401035678
Q ss_pred EEEEEECCCCCEEEEECCCCC-------CEEEEEECCCCCCCEEEEEE-ECCCCEEEEECCCCCCCCEEEC
Q ss_conf 899998999970588417788-------55999952799950799999-2899099993678866552513
Q 000251 335 IIRVWRLPDGLPISVLRGHTA-------AVTAIAFSPRPGSVYQLLSS-SDDGTCRIWDARYSQFSPRIYI 397 (1784)
Q Consensus 335 tIrIWDl~tgk~i~~l~gH~~-------~VtsIafSPdg~~~~~LvSg-s~DGtIrIWDl~tg~~l~~i~l 397 (1784)
.|.+||..+++++..+..+.. ....++|+||++ +|+++ ..++.+.+||+.+++....+..
T Consensus 97 ~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk---~l~va~~~~~~v~~~d~~~~~~~~~~~~ 164 (368)
T d1mdah_ 97 YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA---CLLFFLFGSSAAAGLSVPGASDDQLTKS 164 (368)
T ss_dssp EEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS---CEEEEECSSSCEEEEEETTTEEEEEEEC
T ss_pred EEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEECCCCC---EEEEEECCCCEEEEEECCCCCEEEEEEC
T ss_conf 6999989999383064378542102468864058878998---9999968998599998998938678604
|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=3e-19 Score=143.86 Aligned_cols=104 Identities=13% Similarity=0.293 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 77788999978520232111243323344357885344898889889999844166799889999999999854010699
Q 000251 1673 NKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGR 1752 (1784)
Q Consensus 1673 ~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~Na~~fN~~ 1752 (1784)
..+...+..+++....+..+++|..|++...+|+|+.+|+.||||+||++||++++|+++++|..||++||+||.+||++
T Consensus 25 ~~l~~~l~~il~~l~~~~~s~pF~~Pvd~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 104 (139)
T d1eqfa1 25 VTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGP 104 (139)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHCCCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999829976555179993446678988077354999999997489089999999999999999998799
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 958999999999999999825999
Q 000251 1753 NTDLSTKIKRLSDLVTRTLSSLKA 1776 (1784)
Q Consensus 1753 ~s~~~~~a~~l~~~~~~~l~~~~~ 1776 (1784)
++.++++|..|.++|.+.++++..
T Consensus 105 ~s~i~~~A~~L~~~~~~~~~~~~~ 128 (139)
T d1eqfa1 105 KHSLTQISQSMLDLCDEKLKEKED 128 (139)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999
|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: CREB-binding protein, CBP species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=6.7e-19 Score=141.41 Aligned_cols=104 Identities=13% Similarity=0.256 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 92566777889999785202321112433233443--5788534489888988999984416679988999999999985
Q 000251 1668 DDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSN 1745 (1784)
Q Consensus 1668 d~e~r~kl~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~y~~~i~~Pmdl~tI~~RLen~~Yr~~~~~~~Dv~~i~~N 1745 (1784)
+.+.|..|..++.+|... .+.+++|..|++.. ++|||+++|+.||||+||++||+++.|+++++|..||++||+|
T Consensus 4 p~el~~~l~~~l~~l~~~---~p~a~pF~~pvd~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 80 (114)
T d3dwya1 4 PEELRQALMPTLEALYRQ---DPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNN 80 (114)
T ss_dssp HHHHHHHHHHHHHHHHTC---TTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 899999999999999853---96777667999832135997788837877799999998847566299999999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 40106999589999999999999998259
Q 000251 1746 AESYFGRNTDLSTKIKRLSDLVTRTLSSL 1774 (1784)
Q Consensus 1746 a~~fN~~~s~~~~~a~~l~~~~~~~l~~~ 1774 (1784)
|++||++++.+++.|..|++.|.+.+.++
T Consensus 81 a~~yN~~~s~~~~~A~~L~~~f~~~~~~i 109 (114)
T d3dwya1 81 AWLYNRKTSRVYKFCSKLAEVFEQEIDPV 109 (114)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987999999999999999999999999
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.75 E-value=4.3e-15 Score=115.07 Aligned_cols=360 Identities=9% Similarity=-0.025 Sum_probs=192.0
Q ss_pred CCCCCCEEEEEE-----CCCCCCEEEEEECCCCCEEEEECC---------CCEEEEEECCCCEEEEEEECCCCCEEEEEE
Q ss_conf 322342178998-----067987899999799999999828---------747999977789189998067898599999
Q 000251 255 TMVQKMQNIKRV-----RGHRNAVYCAIFDRSGRYVITGSD---------DRLVKIWSMETAYCLASCRGHEGDITDLAV 320 (1784)
Q Consensus 255 ~~~~~~k~i~tL-----~GH~~~VtsIaFSPDG~~LATGS~---------DGtIkIWDi~tg~~l~tL~gH~~~VtsIaf 320 (1784)
+...+.+....+ ..|...|.++.|||||++||.++. ++.+.|||+.+++. ..+..+...+..+.|
T Consensus 41 ~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~ 119 (470)
T d2bgra1 41 FNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTW 119 (470)
T ss_dssp EETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEE
T ss_pred EECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCCCC-CCCCCCCCCCCCCCC
T ss_conf 9889997899970156443167654059989889799997771000104673499998988851-312468742310101
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEECCC------------------CCCEEEEEECCCCCCCEEEEEEECCCC-E
Q ss_conf 579999999848978999989999705884177------------------885599995279995079999928990-9
Q 000251 321 SSNNALVASASNDCIIRVWRLPDGLPISVLRGH------------------TAAVTAIAFSPRPGSVYQLLSSSDDGT-C 381 (1784)
Q Consensus 321 SPDg~lLASGS~DGtIrIWDl~tgk~i~~l~gH------------------~~~VtsIafSPdg~~~~~LvSgs~DGt-I 381 (1784)
||||+.||... ++.+.+|+..++...+....+ .+....+.|+|||+ +|+....|.+ +
T Consensus 120 SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk---~ia~~~~d~~~v 195 (470)
T d2bgra1 120 SPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT---FLAYAQFNDTEV 195 (470)
T ss_dssp CSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS---EEEEEEEECTTC
T ss_pred CCCCCEEEEEE-CCCCEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEECCCCC---CCCEEEECCCCC
T ss_conf 46764135751-46413798899946532101477740535432011210047765307999987---220268637767
Q ss_pred EEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 99936788665525137999732488878888899999763899987799889994089509997389999989999985
Q 000251 382 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 461 (1784)
Q Consensus 382 rIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~ 461 (1784)
..|.+....... ........+.+...|.. ..+..+.+|++..+..........
T Consensus 196 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~----~~~~~~~v~~~~~~~~~~~~~~~~ 248 (470)
T d2bgra1 196 PLIEYSFYSDES-----------------------LQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNATSIQ 248 (470)
T ss_dssp CEEEEEECCSTT-----------------------CSSCEEEEEECCBTTSC----CCEEEEEEEEGGGCCSSSCCCEEE
T ss_pred CEEEEEEECCCC-----------------------CCCCEEEEECCCCCCCC----CCCCEEEEEECCCCCEEEECCCCC
T ss_conf 069987660477-----------------------78871354036654546----886257999988861455203322
Q ss_pred --CEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE-EECCC---CEEEEE--CCCCCCCCC
Q ss_conf --1233037888800799826762333334578888888755565566870899-80798---099992--788888853
Q 000251 462 --EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT-CSRDG---SAIIWI--PRSRRSHPK 533 (1784)
Q Consensus 462 --~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvS-gS~DG---tIrIWD--l~t~~~~~~ 533 (1784)
...........+..+.|.+++ ..++. ....+ .+.+++ ..++.....
T Consensus 249 ~~~~~~~~~~~~~~~~~~w~~~~--------------------------~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~ 302 (470)
T d2bgra1 249 ITAPASMLIGDHYLCDVTWATQE--------------------------RISLQWLRRIQNYSVMDICDYDESSGRWNCL 302 (470)
T ss_dssp ECCCHHHHTSCEEEEEEEEEETT--------------------------EEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred CCCCCCCCCCCCEEEEEEECCCC--------------------------CEEEEEEECCCCCEEEEEEEECCCCCCEEEE
T ss_conf 47863347898667788876878--------------------------3347873046881599999961888947899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEE--EEEECCCCCEEEEEECCCCC
Q ss_conf 2221122245699999999999999830005899971299986899789999539739--99988999459998069998
Q 000251 534 AARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRI--CVWNAADGSLVHSLTGHTES 611 (1784)
Q Consensus 534 ~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DGsI--rIWDl~tgkli~~L~gH~~~ 611 (1784)
...+..... ...-+..+........+..++.+++....+|.. ++|+...+. ...+..+...
T Consensus 303 ~~~~~~~~~----------------~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~-~~~lt~g~~~ 365 (470)
T d2bgra1 303 VARQHIEMS----------------TTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD-CTFITKGTWE 365 (470)
T ss_dssp GGGCEEEEC----------------SSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSC-CEESCCSSSC
T ss_pred EEEEEEEEE----------------CCCEEECCCCCCCEEEECCCCCEEEEECCCCCCEEEEEECCCCC-EEEECCCCEE
T ss_conf 987514662----------------14335313577724542378847987436757645999526873-0451169804
Q ss_pred EEEEEEECCCCCEEEEEECCC----CEEEE--ECCCCCEEEEEE----CCCCCEEEEEECCCCCEEEEEE---CCCEEEE
Q ss_conf 499999059994999995899----29999--689992289986----0685357999937999999995---8970999
Q 000251 612 TYVLDVHPFNPRIAMSAGYDG----KTIVW--DIWEGIPIRIYE----ISRFRLVDGKFSPDGASIILSD---DVGQLYI 678 (1784)
Q Consensus 612 VtsIafSPdd~~lLaSgs~DG----~IrIW--Dl~tg~~i~tl~----~h~~~ItsiafSPDGk~LAsgs---~DG~I~I 678 (1784)
|..+ +++++..+++++..++ .-.|| ++..+.....+. .+...+..++|||||++++... ..-.+.+
T Consensus 366 v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l 444 (470)
T d2bgra1 366 VIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTL 444 (470)
T ss_dssp EEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEE
T ss_pred EEEE-EEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEE
T ss_conf 8787-897799999999568998351799999888998605703543588898799999989999999832899981999
Q ss_pred EECCCCCCCCCC
Q ss_conf 998998311355
Q 000251 679 LNTGQGESQKDA 690 (1784)
Q Consensus 679 Wdi~sGe~~~~~ 690 (1784)
|+..+|+.++.+
T Consensus 445 ~~~~~g~~v~~l 456 (470)
T d2bgra1 445 HSSVNDKGLRVL 456 (470)
T ss_dssp EETTTTEEEEEE
T ss_pred EECCCCCEEEEE
T ss_conf 998999899998
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=3e-15 Score=116.12 Aligned_cols=279 Identities=10% Similarity=0.007 Sum_probs=166.9
Q ss_pred CCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEC----------CCCEEEEEECCCCEEEEEEECCCC-------CEEEE
Q ss_conf 2234217899806798789999979999999982----------874799997778918999806789-------85999
Q 000251 256 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGS----------DDRLVKIWSMETAYCLASCRGHEG-------DITDL 318 (1784)
Q Consensus 256 ~~~~~k~i~tL~GH~~~VtsIaFSPDG~~LATGS----------~DGtIkIWDi~tg~~l~tL~gH~~-------~VtsI 318 (1784)
+..+.+.+.++.++... .++|+|||+.|++.+ .|+.|.+||..+++.+..+..+.. ....+
T Consensus 52 d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~ 129 (368)
T d1mdah_ 52 CAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHII 129 (368)
T ss_dssp ETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSE
T ss_pred ECCCCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCE
T ss_conf 08998377888578777--5139899988999755676401035678699998999938306437854210246886405
Q ss_pred EECCCCCEEEEEE-CCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEC
Q ss_conf 9957999999984-897899998999970588417788559999527999507999992899099993678866552513
Q 000251 319 AVSSNNALVASAS-NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 397 (1784)
Q Consensus 319 afSPDg~lLASGS-~DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l 397 (1784)
+|+|||++|+++. .++.|.+||+.+++.+..+..+.... +.+.+. ..++..+.||.+.+|++...........
T Consensus 130 a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~~~--~~~v~~~~Dg~~~~~~~~~~~~~~~~~~ 203 (368)
T d1mdah_ 130 GNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----IHPGAA--ATHYLGSCPASLAASDLAAAPAAAGIVG 203 (368)
T ss_dssp EECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----CEEEET--TEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCE----ECCCCC--CEEEEECCCCCEEEEEECCCCEEEEEEE
T ss_conf 8878998999996899859999899893867860467523----746998--2399994899889998268962666530
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEE
Q ss_conf 79997324888788888999997638999877998899940895099973899999899999851233037888800799
Q 000251 398 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 477 (1784)
Q Consensus 398 ~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIa 477 (1784)
. .....+...+....+.+++..+... .+.+.+++...... ........+........
T Consensus 204 ~--------------~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 260 (368)
T d1mdah_ 204 A--------------QCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGA-------TMKAAIDGNESGRKADN 260 (368)
T ss_dssp C--------------CSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCC-------EEECCCCSSCTHHHHTT
T ss_pred C--------------CCCCCCCCCEEECCCCCCCEEEEEC--CCCEEEEEECCCCE-------EEEEECCCCCCEEEEEE
T ss_conf 3--------------1113566646601015586899934--89779996069936-------99760246543045540
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 82676233333457888888875556556687089980798099992788888853222112224569999999999999
Q 000251 478 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 557 (1784)
Q Consensus 478 fspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~ 557 (1784)
+.+
T Consensus 261 ~~~----------------------------------------------------------------------------- 263 (368)
T d1mdah_ 261 FRS----------------------------------------------------------------------------- 263 (368)
T ss_dssp EEE-----------------------------------------------------------------------------
T ss_pred ECC-----------------------------------------------------------------------------
T ss_conf 127-----------------------------------------------------------------------------
Q ss_pred CCCEECCCCCCCEEEEEECCCCCEEEEEECC---------CEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCC-EEEE
Q ss_conf 9830005899971299986899789999539---------73999988999459998069998499999059994-9999
Q 000251 558 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMD---------CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR-IAMS 627 (1784)
Q Consensus 558 ~~~~~l~~h~~~VtsIafSPDG~~LaSgs~D---------GsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~-lLaS 627 (1784)
.....+++++++..++....+ ..|.+||..+++.+..+.. ...+..++|+|++.. ++++
T Consensus 264 ----------~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s 332 (368)
T d1mdah_ 264 ----------AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYAN 332 (368)
T ss_dssp ----------CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEE
T ss_pred ----------CCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEECC-CCCEEEEEECCCCCEEEEEE
T ss_conf ----------8835688717998799983589733405886499998999948689558-99651799998999899999
Q ss_pred EECCCCEEEEECCCCCEEEEEECCCC
Q ss_conf 95899299996899922899860685
Q 000251 628 AGYDGKTIVWDIWEGIPIRIYEISRF 653 (1784)
Q Consensus 628 gs~DG~IrIWDl~tg~~i~tl~~h~~ 653 (1784)
+..|+.|.+||..+++.+..+..+..
T Consensus 333 ~~~~~~v~v~D~~tgk~~~~i~~g~~ 358 (368)
T d1mdah_ 333 SAGTEVLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp ETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred ECCCCEEEEEECCCCCEEEEEECCCC
T ss_conf 48999699998999979999879999
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.66 E-value=1.8e-15 Score=117.74 Aligned_cols=355 Identities=10% Similarity=-0.010 Sum_probs=185.9
Q ss_pred EEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECC
Q ss_conf 99982874799997778918999806789859999957999999984897899998999970588417788559999527
Q 000251 285 VITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 364 (1784)
Q Consensus 285 LATGS~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSP 364 (1784)
+++|+.+|.|.||++.+++.++++.. |+|++.. ..|..+.+.+++. .+........|...+....++|
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpV---------fspd~~~-g~g~~~es~~vl~--~~~~~~~gd~hhP~~s~t~gtp 81 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPV---------FNVDSAT-GWGITNESKEILG--GDQQYLNGDCHHPHISMTDGRY 81 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECS---------SSBCTTT-CTTTSHHHHHHHC--SSSCCSCCCBCCCEEEEETTEE
T ss_pred EEECCCCCCEEEEECCCCCEEEEEEE---------ECCCCCE-EEEECCCCCEEEE--CCCCCCCCCCCCCCCCEECCCC
T ss_conf 99688777489996789807999976---------7578987-9998886504783--1332256755677722103268
Q ss_pred CCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC--EEEEEECCC-
Q ss_conf 99950799999289909999367886655251379997324888788888999997638999877998--899940895-
Q 000251 365 RPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT--VFVTGSSDT- 441 (1784)
Q Consensus 365 dg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~--~LaSGs~DG- 441 (1784)
||+ +.+++...+..|.++|+.+.+....+.+ +....+..++|+|+|+ +++..+.+.
T Consensus 82 DGr--~lfV~d~~~~rVavIDl~t~k~~~ii~i-------------------P~g~gphgi~~spdg~t~YV~~~~~~~v 140 (441)
T d1qnia2 82 DGK--YLFINDKANTRVARIRLDIMKTDKITHI-------------------PNVQAIHGLRLQKVPKTNYVFCNAEFVI 140 (441)
T ss_dssp EEE--EEEEEETTTTEEEEEETTTTEEEEEEEC-------------------TTCCCEEEEEECCSSBCCEEEEEECSCE
T ss_pred CCC--EEEEECCCCCEEEEEECCCCCEEEEEEC-------------------CCCCCCCCEEEECCCCEEEEEECCCCCC
T ss_conf 888--8999738999799998877847557956-------------------7887864348705699899995667754
Q ss_pred ----------------EEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ----------------0999738999998999998512330378888007998267623333345788888887555655
Q 000251 442 ----------------LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 505 (1784)
Q Consensus 442 ----------------tIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~ 505 (1784)
.+..+|..+ ......+.. ......+.|+|+|
T Consensus 141 ~~~~dg~~~~~~~~~~~~~~iD~~t---------~~v~~qI~v-~~~p~~v~~spdG----------------------- 187 (441)
T d1qnia2 141 PQPNDGTDFSLDNSYTMFTAIDAET---------MDVAWQVIV-DGNLDNTDADYTG----------------------- 187 (441)
T ss_dssp ESSCSSSCCCGGGEEEEEEEEETTT---------CSEEEEEEE-SSCCCCEEECSSS-----------------------
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCC---------CEEEEEEEC-CCCCCCEEECCCC-----------------------
T ss_conf 4367663001455532388663755---------606478736-9986546987999-----------------------
Q ss_pred CCCCEEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEE
Q ss_conf 668708998079-8099992788888853222112224569999999999999983000589997129998689978999
Q 000251 506 FCHDNIVTCSRD-GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 584 (1784)
Q Consensus 506 ~~~~~LvSgS~D-GtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaS 584 (1784)
.++++.+.+ ..+..++..+..... .+ ........+.++++|+++..
T Consensus 188 ---k~a~vt~~nse~~~~id~~t~~~~d-----------------------------~i-~v~n~p~~~~~~~dGk~~~v 234 (441)
T d1qnia2 188 ---KYATSTCYNSERAVDLAGTMRNDRD-----------------------------WV-VVFNVERIAAAVKAGNFKTI 234 (441)
T ss_dssp ---SEEEEEESCTTCCSSHHHHTCSSBC-----------------------------EE-EEEEHHHHHHHHHTTCCBCC
T ss_pred ---CEEEEEECCCCCEEEEECCCCCEEE-----------------------------EE-EECCCCCEEEEECCCCEEEE
T ss_conf ---9899985178731898515712178-----------------------------99-96885110799669999996
Q ss_pred EECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCC-----------EEEEEECCCC
Q ss_conf 95397399998899945999806999849999905999499999589929999689992-----------2899860685
Q 000251 585 AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI-----------PIRIYEISRF 653 (1784)
Q Consensus 585 gs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~-----------~i~tl~~h~~ 653 (1784)
+ .++.+.++.......+..+..... ...+.++|++..+++++..+++|.|||+.+.. ++.-.....-
T Consensus 235 ~-~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~gl 312 (441)
T d1qnia2 235 G-DSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGL 312 (441)
T ss_dssp T-TCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCS
T ss_pred C-CCCCEEEECCCCCCEEEEEECCCC-CCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 9-998289980368706899717988-66726899987899907759938999832244575256884247996014554
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCEEECCCC-CCEEECCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 35799993799999999589709999989983113553311331798-50688147862312211146768878756678
Q 000251 654 RLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDY-RPLVQDTYGNVLDQETQLAPHRRNLQDPLCDS 732 (1784)
Q Consensus 654 ~ItsiafSPDGk~LAsgs~DG~I~IWdi~sGe~~~~~~~~~~fs~D~-r~Li~d~~g~Vld~~tql~p~l~~i~~~L~D~ 732 (1784)
......|+++|..+.+...|.+|..|++..... .+..+. .++ ++ .
T Consensus 313 gplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~--------~~~~~~~~~v--------~~------------------~ 358 (441)
T d1qnia2 313 GPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIK--------HYNGDRVNYI--------RQ------------------K 358 (441)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHH--------HHTTCCCCCE--------EE------------------E
T ss_pred CCCCCEECCCCEEEECCCCCCEEEEECCCHHHH--------HHCCCCCCEE--------EE------------------C
T ss_conf 766522657855998524431689723542213--------3226777656--------86------------------4
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCCEEEECC
Q ss_conf 8888999510010100166220698799984999618998872684017
Q 000251 733 AMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPL 781 (1784)
Q Consensus 733 ~~~p~p~~~q~l~~~r~~gv~~iAfSPDG~~LAvg~d~s~~~~i~l~~l 781 (1784)
- +-.+| ++|...+.+.+|+|||+||+.+.-.+.++.+.+.|+
T Consensus 359 ~----~v~y~---~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~ 400 (441)
T d1qnia2 359 L----DVQYQ---PGHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPL 400 (441)
T ss_dssp E----ECSSC---EEEEEETTTTSTTCCCCEEEEEESCCGGGSCCCSSS
T ss_pred C----CCCCC---CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 5----32668---987752454223898848996574442557678889
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.63 E-value=2.1e-15 Score=117.24 Aligned_cols=290 Identities=11% Similarity=0.044 Sum_probs=148.2
Q ss_pred CCCCCCEEEEEECCCCCEEEEE-CCCCEEEEEECCCCEEEEEEE-CCCCCEEEEEECCCCC--EEEEEECCCEEEEEECC
Q ss_conf 0679878999997999999998-287479999777891899980-6789859999957999--99998489789999899
Q 000251 267 RGHRNAVYCAIFDRSGRYVITG-SDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSNNA--LVASASNDCIIRVWRLP 342 (1784)
Q Consensus 267 ~GH~~~VtsIaFSPDG~~LATG-S~DGtIkIWDi~tg~~l~tL~-gH~~~VtsIafSPDg~--lLASGS~DGtIrIWDl~ 342 (1784)
..|.-.+.+..++|||++|+.. ..+..|.+||+.+++....+. .+...+..++|+|+++ +++..+.+. +.+ ..
T Consensus 68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~-v~~--~~ 144 (441)
T d1qnia2 68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFV-IPQ--PN 144 (441)
T ss_dssp CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSC-EES--SC
T ss_pred CCCCCCCCEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCC-CCC--CC
T ss_conf 556777221032688888999738999799998877847557956788786434870569989999566775-443--67
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 99705884177885599995279995079999928990999936788665525137999732488878888899999763
Q 000251 343 DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 422 (1784)
Q Consensus 343 tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V 422 (1784)
.+..+ ..+. .. ..+..+|..+.....++.. ...+
T Consensus 145 dg~~~---------------~~~~----~~------~~~~~iD~~t~~v~~qI~v---------------------~~~p 178 (441)
T d1qnia2 145 DGTDF---------------SLDN----SY------TMFTAIDAETMDVAWQVIV---------------------DGNL 178 (441)
T ss_dssp SSSCC---------------CGGG----EE------EEEEEEETTTCSEEEEEEE---------------------SSCC
T ss_pred CCCCC---------------CCCC----CC------CEEEEECCCCCEEEEEEEC---------------------CCCC
T ss_conf 66300---------------1455----53------2388663755606478736---------------------9986
Q ss_pred EEEEECCCCCEEEEEECCC-EEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8999877998899940895-099973899999899999851233037888800799826762333334578888888755
Q 000251 423 FCCAFNANGTVFVTGSSDT-LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 501 (1784)
Q Consensus 423 ~sIafSPdG~~LaSGs~DG-tIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~ 501 (1784)
..++|+|+|+++++.+.+. .+..++..+.. ....+... ..-..+.+.++|
T Consensus 179 ~~v~~spdGk~a~vt~~nse~~~~id~~t~~---------~~d~i~v~-n~p~~~~~~~dG------------------- 229 (441)
T d1qnia2 179 DNTDADYTGKYATSTCYNSERAVDLAGTMRN---------DRDWVVVF-NVERIAAAVKAG------------------- 229 (441)
T ss_dssp CCEEECSSSSEEEEEESCTTCCSSHHHHTCS---------SBCEEEEE-EHHHHHHHHHTT-------------------
T ss_pred CCEEECCCCCEEEEEECCCCCEEEEECCCCC---------EEEEEEEC-CCCCEEEEECCC-------------------
T ss_conf 5469879999899985178731898515712---------17899968-851107996699-------------------
Q ss_pred CCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCE
Q ss_conf 56556687089980798099992788888853222112224569999999999999983000589997129998689978
Q 000251 502 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF 581 (1784)
Q Consensus 502 ~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~ 581 (1784)
+. +..+.++.+.++...... .............+.++|||++
T Consensus 230 -------k~-~~v~~~~v~vvd~~~~~~------------------------------v~~~IPvgksPhGv~vSPDGky 271 (441)
T d1qnia2 230 -------NF-KTIGDSKVPVVDGRGESE------------------------------FTRYIPVPKNPHGLNTSPDGKY 271 (441)
T ss_dssp -------CC-BCCTTCCCCEEECSSSCS------------------------------SEEEECCBSSCCCEEECTTSCE
T ss_pred -------CE-EEECCCCCEEEECCCCCC------------------------------EEEEEECCCCCCCCEECCCCCE
T ss_conf -------99-996999828998036870------------------------------6899717988667268999878
Q ss_pred EEE-EECCCEEEEEECCCCCE--------EEEEECC---CCCEEEEEEECCCCCEEEEEECCCCEEEEECCC--------
Q ss_conf 999-95397399998899945--------9998069---998499999059994999995899299996899--------
Q 000251 582 VLA-AIMDCRICVWNAADGSL--------VHSLTGH---TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE-------- 641 (1784)
Q Consensus 582 LaS-gs~DGsIrIWDl~tgkl--------i~~L~gH---~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~t-------- 641 (1784)
+++ +..+++|.|||+.+... ...+.++ .-.....+|.+ ++..+.+...|..|..|++..
T Consensus 272 l~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~ 350 (441)
T d1qnia2 272 FIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGD 350 (441)
T ss_dssp EEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTC
T ss_pred EEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEECC-CCEEEECCCCCCEEEEECCCHHHHHHCCC
T ss_conf 99907759938999832244575256884247996014554766522657-85599852443168972354221332267
Q ss_pred --CCEEEEE-----ECCCCCEEEEEECCCCCEEEEEECC
Q ss_conf --9228998-----6068535799993799999999589
Q 000251 642 --GIPIRIY-----EISRFRLVDGKFSPDGASIILSDDV 673 (1784)
Q Consensus 642 --g~~i~tl-----~~h~~~ItsiafSPDGk~LAsgs~D 673 (1784)
...+..+ .+|...+...+++|||+||++++.-
T Consensus 351 ~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~ 389 (441)
T d1qnia2 351 RVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKF 389 (441)
T ss_dssp CCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESC
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 776568645326689877524542238988489965744
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=7.8e-09 Score=71.84 Aligned_cols=384 Identities=10% Similarity=0.047 Sum_probs=171.5
Q ss_pred ECCCCCEEEEECCCCEEEEEECCCCEEEEEEEC---CCCCEEEEEECCCCCEEEEEE---------CCCEEEEEECCCCC
Q ss_conf 979999999982874799997778918999806---789859999957999999984---------89789999899997
Q 000251 278 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRG---HEGDITDLAVSSNNALVASAS---------NDCIIRVWRLPDGL 345 (1784)
Q Consensus 278 FSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~g---H~~~VtsIafSPDg~lLASGS---------~DGtIrIWDl~tgk 345 (1784)
|.+++.++.. ..+|.|.+|++.+++....+.. ..-.+....||||+++|+... ..+.+.++|+.++.
T Consensus 24 W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~ 102 (465)
T d1xfda1 24 WISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD 102 (465)
T ss_dssp BSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred EECCCCEEEE-ECCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCCCC
T ss_conf 9179848999-289969999878998899872764444553213898988869999845100476033528999856884
Q ss_pred EEEEE--CCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 05884--1778855999952799950799999289909999367886655251379997324888788888999997638
Q 000251 346 PISVL--RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 423 (1784)
Q Consensus 346 ~i~~l--~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~ 423 (1784)
..... ......+....|+|+|+ .|+... ++.|.+.+...+...+...-........|...... .......-.
T Consensus 103 ~~~l~~~~~~~~~l~~~~wSPDG~---~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vy--eee~~~~~~ 176 (465)
T d1xfda1 103 PQSLDPPEVSNAKLQYAGWGPKGQ---QLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLY--EEEILKTHI 176 (465)
T ss_dssp CEECCCTTCCSCCCSBCCBCSSTT---CEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHH--HHTTSSSSE
T ss_pred EEECCCCCCCCCCCCEEEECCCCC---EEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEECCCCCHHH--HHHHCCCCC
T ss_conf 564157667764311002426785---699996-13299995489965897112676604436643100--123036643
Q ss_pred EEEECCCCCEEEEEEC-CCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9998779988999408-950999738999998999998512330378888007998267623333345788888887555
Q 000251 424 CCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 502 (1784)
Q Consensus 424 sIafSPdG~~LaSGs~-DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~ 502 (1784)
.+.|||||+.||.... +..|..+.+.... ......+..+.+...|
T Consensus 177 a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~--------------~~~~p~~~~~~Yp~~G-------------------- 222 (465)
T d1xfda1 177 AHWWSPDGTRLAYAAINDSRVPIMELPTYT--------------GSIYPTVKPYHYPKAG-------------------- 222 (465)
T ss_dssp EEEECTTSSEEEEEEEECTTSCEEEECCCS--------------SSSSCCCEEEECCBTT--------------------
T ss_pred EEEECCCCCEEEEEEECCCCCCEEECCCCC--------------CCCCCEEEEEECCCCC--------------------
T ss_conf 489779898689999536666146412344--------------5444313345302568--------------------
Q ss_pred CCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEE
Q ss_conf 65566870899807980999927888888532221122245699999999999999830005899971299986899789
Q 000251 503 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 582 (1784)
Q Consensus 503 ~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~L 582 (1784)
.. .....+.++++.++...... .+.........-+..+.|+++++++
T Consensus 223 ------~~----np~~~l~v~d~~~~~~~~~~-----------------------~~~~~~~~~~~y~~~~~W~~d~~~~ 269 (465)
T d1xfda1 223 ------SE----NPSISLHVIGLNGPTHDLEM-----------------------MPPDDPRMREYYITMVKWATSTKVA 269 (465)
T ss_dssp ------SC----CCEEEEEEEESSSSCCCEEC-----------------------CCCCCGGGSSEEEEEEEESSSSEEE
T ss_pred ------CC----CCCEEEEEEECCCCCEEEEE-----------------------ECCCCCCCCCCEEEEEEECCCCEEE
T ss_conf ------88----97213799836898178999-----------------------5257676666304566875799389
Q ss_pred EEEEC-C---CEEEEEECCCCCEEEEEECCC-CCE----EEEEEECCCCCEEEE--EECCC--CEEEEEC------CCCC
Q ss_conf 99953-9---739999889994599980699-984----999990599949999--95899--2999968------9992
Q 000251 583 LAAIM-D---CRICVWNAADGSLVHSLTGHT-EST----YVLDVHPFNPRIAMS--AGYDG--KTIVWDI------WEGI 643 (1784)
Q Consensus 583 aSgs~-D---GsIrIWDl~tgkli~~L~gH~-~~V----tsIafSPdd~~lLaS--gs~DG--~IrIWDl------~tg~ 643 (1784)
+.... + ..|.++|..+|++...+.... +.| ....|++++..++.. .-.+| .+....+ ..+.
T Consensus 270 ~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~ 349 (465)
T d1xfda1 270 VTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND 349 (465)
T ss_dssp EEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC
T ss_pred EEEECCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCEEECCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCC
T ss_conf 99974100301379970799927877897278517356786057468980577776543166716899831566667886
Q ss_pred EEEEEECCCCCEEEE-EECCCCCEEEE-EECC--CEEEEEECC--CCCCCCCCCCCEEECCCCCCEEECCCCCEEECCCC
Q ss_conf 289986068535799-99379999999-9589--709999989--98311355331133179850688147862312211
Q 000251 644 PIRIYEISRFRLVDG-KFSPDGASIIL-SDDV--GQLYILNTG--QGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQ 717 (1784)
Q Consensus 644 ~i~tl~~h~~~Itsi-afSPDGk~LAs-gs~D--G~I~IWdi~--sGe~~~~~~~~~~fs~D~r~Li~d~~g~Vld~~tq 717 (1784)
.+..+..+.-.|..+ .|+.++..|.. +..+ +.-.+|.+. .+...
T Consensus 350 ~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~------------------------------ 399 (465)
T d1xfda1 350 NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNR------------------------------ 399 (465)
T ss_dssp CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCC------------------------------
T ss_pred EEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCCC------------------------------
T ss_conf 26982269921997789838999999999689998268999977899860------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCCEEEECCCCCCCC
Q ss_conf 1467688787566788888999510010100166220698799984999618998872684017986622
Q 000251 718 LAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVM 787 (1784)
Q Consensus 718 l~p~l~~i~~~L~D~~~~p~p~~~q~l~~~r~~gv~~iAfSPDG~~LAvg~d~s~~~~i~l~~l~~~~~l 787 (1784)
..+-|+.. ...+...+.|||+|.+++..........+.+....+++.+
T Consensus 400 --------~~lt~~~~--------------~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~ 447 (465)
T d1xfda1 400 --------QCLSCDLV--------------ENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKM 447 (465)
T ss_dssp --------BCSSTTSS--------------SSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEE
T ss_pred --------EEECCCCC--------------CCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEE
T ss_conf --------55314467--------------8898799999999999999800699984999999999799
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.35 E-value=7.5e-09 Score=71.96 Aligned_cols=28 Identities=7% Similarity=0.001 Sum_probs=12.4
Q ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 98599999579999999848978999989
Q 000251 313 GDITDLAVSSNNALVASASNDCIIRVWRL 341 (1784)
Q Consensus 313 ~~VtsIafSPDg~lLASGS~DGtIrIWDl 341 (1784)
..+..|+|++++++|+++.. +.+..|.+
T Consensus 40 ~~~s~la~s~d~~~ly~~~~-~~~~~~~i 67 (365)
T d1jofa_ 40 EPISWMTFDHERKNIYGAAM-KKWSSFAV 67 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEB-TEEEEEEE
T ss_pred CCCCEEEECCCCCEEEEEEC-CCEEEEEE
T ss_conf 99777999489899999938-94789999
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.32 E-value=3e-08 Score=67.82 Aligned_cols=126 Identities=17% Similarity=0.080 Sum_probs=80.0
Q ss_pred CCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 34217899806798789999979999999982874799997778918999806789859999957999999984897899
Q 000251 258 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIR 337 (1784)
Q Consensus 258 ~~~k~i~tL~GH~~~VtsIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIr 337 (1784)
...+.+.++.... .+..++++|||+++++...++.|..|+... . ...+......+.+++|.++|+++++...++.+.
T Consensus 16 ~~~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~ 92 (302)
T d2p4oa1 16 APAKIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIP 92 (302)
T ss_dssp CCEEEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCCCEEEECCCCC-CCCCEEECCCCCEEEEECCCCEEEEEECCC-C-EEEEECCCCCCCEEEECCCCCEEEEECCCCEEE
T ss_conf 8620788888998-847877999988999968899899990899-8-899971799853689867788699832895378
Q ss_pred EEECCCCC--EEEEE-CCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCC
Q ss_conf 99899997--05884-177885599995279995079999928990999936788
Q 000251 338 VWRLPDGL--PISVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 389 (1784)
Q Consensus 338 IWDl~tgk--~i~~l-~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg 389 (1784)
+|+..... ..... .........+++.+++. ++++...++.+..++...+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~---~~v~~~~~~~i~~~~~~~~ 144 (302)
T d2p4oa1 93 VVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ---YLTADSYRGAIWLIDVVQP 144 (302)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESSSSE---EEEEETTTTEEEEEETTTT
T ss_pred EEEECCCCCCEEECCCCCCCCCCCEEEECCCCC---EEEECCCCCCCEEEECCCC
T ss_conf 887101111012102357863221667715797---8750356554102421687
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.30 E-value=1.6e-08 Score=69.75 Aligned_cols=73 Identities=10% Similarity=0.136 Sum_probs=28.4
Q ss_pred EEEEEECCCCCEEEEEEC-CCEEEEEECCC-CCEEE--EEE--CCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 129998689978999953-97399998899-94599--980--699984999990599949999958992999968999
Q 000251 570 VNMIVWSLDNRFVLAAIM-DCRICVWNAAD-GSLVH--SLT--GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 642 (1784)
Q Consensus 570 VtsIafSPDG~~LaSgs~-DGsIrIWDl~t-gkli~--~L~--gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg 642 (1784)
+.++.|+|+|++++++.. ...|.+|+... +.+.. .+. ........++|+|++..+.++...++.|.+|++..+
T Consensus 147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCC
T ss_conf 1597888999989982079987999970688716652511112788740899988998669995158998999995598
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.25 E-value=5.1e-08 Score=66.16 Aligned_cols=93 Identities=10% Similarity=-0.011 Sum_probs=34.8
Q ss_pred EEEEECCCCCEEEEE-CCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC
Q ss_conf 999997999999998-2874799997778918999806789859999957999999984897899998999970588417
Q 000251 274 YCAIFDRSGRYVITG-SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG 352 (1784)
Q Consensus 274 tsIaFSPDG~~LATG-S~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~l~g 352 (1784)
..++++++|.+.++. +..+.|..++............-......+++++++.++++....+.+++++..++..+....
T Consensus 17 ~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~- 95 (260)
T d1rwia_ 17 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD- 95 (260)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-
T ss_pred CEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEECEEEEEEECCCEEEEEEE-
T ss_conf 8899969999999971899889999389966897436986684089993899889863100003554211200000010-
Q ss_pred CCCCEEEEEECCCCC
Q ss_conf 788559999527999
Q 000251 353 HTAAVTAIAFSPRPG 367 (1784)
Q Consensus 353 H~~~VtsIafSPdg~ 367 (1784)
......++++.++++
T Consensus 96 ~~~~p~~iavd~~g~ 110 (260)
T d1rwia_ 96 GLNYPEGLAVDTQGA 110 (260)
T ss_dssp SCCSEEEEEECTTCC
T ss_pred EEEECCCCCCCCCCE
T ss_conf 000000002455320
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.24 E-value=5.6e-08 Score=65.91 Aligned_cols=127 Identities=9% Similarity=0.025 Sum_probs=82.1
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 78918999806789859999957999999984897899998999970588417788559999527999507999992899
Q 000251 300 ETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG 379 (1784)
Q Consensus 300 ~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DG 379 (1784)
...+.+.++.. ...+..+++.|||+++++...+++|..|+.. +. ...+......+.+++|.++++ ++++...++
T Consensus 16 ~~~~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~---l~v~~~~~~ 89 (302)
T d2p4oa1 16 APAKIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGD---LVATGWNAD 89 (302)
T ss_dssp CCEEEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSC---EEEEEECTT
T ss_pred CCCCEEEECCC-CCCCCCEEECCCCCEEEEECCCCEEEEEECC-CC-EEEEECCCCCCCEEEECCCCC---EEEEECCCC
T ss_conf 86207888889-9884787799998899996889989999089-98-899971799853689867788---699832895
Q ss_pred CEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCC
Q ss_conf 0999936788665525137999732488878888899999763899987799889994089509997389
Q 000251 380 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNAC 449 (1784)
Q Consensus 380 tIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~ 449 (1784)
.+..|+............. .........+++.++|.++++...++.+..++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~ 142 (302)
T d2p4oa1 90 SIPVVSLVKSDGTVETLLT-----------------LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV 142 (302)
T ss_dssp SCEEEEEECTTSCEEEEEE-----------------CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCCCEEECCC-----------------CCCCCCCCEEEECCCCCEEEECCCCCCCEEEECC
T ss_conf 3788871011110121023-----------------5786322166771579787503565541024216
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=1.1e-07 Score=63.94 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=39.8
Q ss_pred EEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC---CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCC
Q ss_conf 79999777891899980678985999995799999998489---7899998999970588417788559999527999
Q 000251 293 LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG 367 (1784)
Q Consensus 293 tIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~D---GtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~ 367 (1784)
.|.|-|.. |.....+..+...+...+|||||+.||..... ..+.+.+...+.. ..+..+........|+|++.
T Consensus 20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~ 95 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGS 95 (269)
T ss_dssp EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSS
T ss_pred EEEEECCC-CCCCEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCE-EEEEEEECCCCCCEECCCCC
T ss_conf 99999289-997679865898426038878999899998152675134431136750-67764202454302448898
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.21 E-value=1.1e-07 Score=63.92 Aligned_cols=109 Identities=6% Similarity=-0.015 Sum_probs=57.4
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE
Q ss_conf 12999868997899995397399998899945999806999849999905999499999589929999689992289986
Q 000251 570 VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE 649 (1784)
Q Consensus 570 VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~ 649 (1784)
...+++++++.++++...++.|..++...................|++.+ ++.++++....+.|..++..... ...+.
T Consensus 142 p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~-~~~~~ 219 (260)
T d1rwia_ 142 PDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTT-STVLP 219 (260)
T ss_dssp CCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSC-CEECC
T ss_pred CCEEEECCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEE-EEEEEEEECCCCEEEEEECCCCE-EEEEC
T ss_conf 52054548998864102564332223431001222101147876312310-00134321489989999699976-99970
Q ss_pred -CCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf -0685357999937999999995897099999
Q 000251 650 -ISRFRLVDGKFSPDGASIILSDDVGQLYILN 680 (1784)
Q Consensus 650 -~h~~~ItsiafSPDGk~LAsgs~DG~I~IWd 680 (1784)
..-.....++++++|.++++-..++.|..++
T Consensus 220 ~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 220 FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp CCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred CCCCCCEEEEEEECCCCEEEEECCCCEEEEEE
T ss_conf 69989817999908999999979999899995
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=2e-07 Score=62.09 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=6.7
Q ss_pred CCCCEEEEEECCCCC
Q ss_conf 788559999527999
Q 000251 353 HTAAVTAIAFSPRPG 367 (1784)
Q Consensus 353 H~~~VtsIafSPdg~ 367 (1784)
+...+...+|||||+
T Consensus 37 ~~~~~~sP~wSPDGk 51 (269)
T d2hqsa1 37 SPQPLMSPAWSPDGS 51 (269)
T ss_dssp ESSCEEEEEECTTSS
T ss_pred CCCCEEEEEECCCCC
T ss_conf 898426038878999
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=3.2e-07 Score=60.63 Aligned_cols=332 Identities=11% Similarity=0.019 Sum_probs=161.3
Q ss_pred CCEEEEEECCCCCEEEEEC---------CCCEEEEEECCCCEEEEEEE--CCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 8789999979999999982---------87479999777891899980--678985999995799999998489789999
Q 000251 271 NAVYCAIFDRSGRYVITGS---------DDRLVKIWSMETAYCLASCR--GHEGDITDLAVSSNNALVASASNDCIIRVW 339 (1784)
Q Consensus 271 ~~VtsIaFSPDG~~LATGS---------~DGtIkIWDi~tg~~l~tL~--gH~~~VtsIafSPDg~lLASGS~DGtIrIW 339 (1784)
-.+....|||||++|+... ..+.+.|+|+.++....... .....+....|||||+.||... ++.|.+.
T Consensus 61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~ 139 (465)
T d1xfda1 61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC 139 (465)
T ss_dssp TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred CCCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCCCCEEECCCCCCCCCCCCEEEECCCCCEEEEEE-CCEEEEE
T ss_conf 553213898988869999845100476033528999856884564157667764311002426785699996-1329999
Q ss_pred ECCCCCEEEEEC-CCCCC-----------------EEEEEECCCCCCCEEEEEEE-CCCCEEEEECCCCCCCCEEECCCC
Q ss_conf 899997058841-77885-----------------59999527999507999992-899099993678866552513799
Q 000251 340 RLPDGLPISVLR-GHTAA-----------------VTAIAFSPRPGSVYQLLSSS-DDGTCRIWDARYSQFSPRIYIPRP 400 (1784)
Q Consensus 340 Dl~tgk~i~~l~-gH~~~-----------------VtsIafSPdg~~~~~LvSgs-~DGtIrIWDl~tg~~l~~i~l~~~ 400 (1784)
+...+..++... +..+. -.++-|+|||+ +|+... .+..|..+.+.....
T Consensus 140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk---~iaf~~~D~s~V~~~~~~~~~~--------- 207 (465)
T d1xfda1 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT---RLAYAAINDSRVPIMELPTYTG--------- 207 (465)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS---EEEEEEEECTTSCEEEECCCSS---------
T ss_pred ECCCCCEEEEECCCCCCEEECCCCCHHHHHHHCCCCCEEEECCCCC---EEEEEEECCCCCCEEECCCCCC---------
T ss_conf 5489965897112676604436643100123036643489779898---6899995366661464123445---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECC
Q ss_conf 97324888788888999997638999877998899940895099973899999899999851233037888800799826
Q 000251 401 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSG 480 (1784)
Q Consensus 401 ~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafsp 480 (1784)
.....+..+.+...|.... ...+.++++..+....... ..........-+..+.|.+
T Consensus 208 ----------------~~~p~~~~~~Yp~~G~~np----~~~l~v~d~~~~~~~~~~~---~~~~~~~~~~y~~~~~W~~ 264 (465)
T d1xfda1 208 ----------------SIYPTVKPYHYPKAGSENP----SISLHVIGLNGPTHDLEMM---PPDDPRMREYYITMVKWAT 264 (465)
T ss_dssp ----------------SSSCCCEEEECCBTTSCCC----EEEEEEEESSSSCCCEECC---CCCCGGGSSEEEEEEEESS
T ss_pred ----------------CCCCEEEEEECCCCCCCCC----CEEEEEEECCCCCEEEEEE---CCCCCCCCCCEEEEEEECC
T ss_conf ----------------4443133453025688897----2137998368981789995---2576766663045668757
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE-EECC---CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 762333334578888888755565566870899-8079---809999278888885322211222456999999999999
Q 000251 481 CAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT-CSRD---GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 556 (1784)
Q Consensus 481 dglas~~~~~~s~~~~~~~~~~~~~~~~~~LvS-gS~D---GtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~ 556 (1784)
++ ..++. ...+ ..+.++|..++............+
T Consensus 265 d~--------------------------~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~w--------------- 303 (465)
T d1xfda1 265 ST--------------------------KVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAW--------------- 303 (465)
T ss_dssp SS--------------------------EEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSC---------------
T ss_pred CC--------------------------EEEEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCE---------------
T ss_conf 99--------------------------3899997410030137997079992787789727851---------------
Q ss_pred CCCCEECCCCCCCEEEEEECCCCCEEEE---EECCC--EEEEEEC------CCCCEEEEEECCCCCEEEE-EEECCCCCE
Q ss_conf 9983000589997129998689978999---95397--3999988------9994599980699984999-990599949
Q 000251 557 GGPRQRILPTPRGVNMIVWSLDNRFVLA---AIMDC--RICVWNA------ADGSLVHSLTGHTESTYVL-DVHPFNPRI 624 (1784)
Q Consensus 557 ~~~~~~l~~h~~~VtsIafSPDG~~LaS---gs~DG--sIrIWDl------~tgkli~~L~gH~~~VtsI-afSPdd~~l 624 (1784)
. ...-....|+++|+.++. .-.+| .++...+ ..+..+..+....-.|..+ .|...++.+
T Consensus 304 -------v--~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~v 374 (465)
T d1xfda1 304 -------L--HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKI 374 (465)
T ss_dssp -------C--CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEE
T ss_pred -------E--ECCCCCEEECCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEE
T ss_conf -------7--3567860574689805777765431667168998315666678862698226992199778983899999
Q ss_pred EEEEECCC--CEEEEEC--CCCCEEEEEE---CCCCCEEEEEECCCCCEEEEEECC---CEEEEEECCCCCCCC
Q ss_conf 99995899--2999968--9992289986---068535799993799999999589---709999989983113
Q 000251 625 AMSAGYDG--KTIVWDI--WEGIPIRIYE---ISRFRLVDGKFSPDGASIILSDDV---GQLYILNTGQGESQK 688 (1784)
Q Consensus 625 LaSgs~DG--~IrIWDl--~tg~~i~tl~---~h~~~ItsiafSPDGk~LAsgs~D---G~I~IWdi~sGe~~~ 688 (1784)
.+++..++ .-.||.+ ..+.....+. ........+.|||+|++++..... -.+.+++...++.+.
T Consensus 375 yF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~ 448 (465)
T d1xfda1 375 YFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMF 448 (465)
T ss_dssp EEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEE
T ss_pred EEEEECCCCCCEEEEEEECCCCCCCEEECCCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEE
T ss_conf 99996899982689999778998605531446788987999999999999998006999849999999997999
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.06 E-value=4.9e-07 Score=59.41 Aligned_cols=111 Identities=12% Similarity=0.141 Sum_probs=67.4
Q ss_pred EEEEECCCCC-----EEEEEECCCEEEEEECCCCCEEE------EEEC-CCCCEEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 2999868997-----89999539739999889994599------9806-9998499999059994999995899299996
Q 000251 571 NMIVWSLDNR-----FVLAAIMDCRICVWNAADGSLVH------SLTG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638 (1784)
Q Consensus 571 tsIafSPDG~-----~LaSgs~DGsIrIWDl~tgkli~------~L~g-H~~~VtsIafSPdd~~lLaSgs~DG~IrIWD 638 (1784)
+.++|++++. ++++-+..+.|..|++.....+. .+.+ .....-.+++.. ++++.++....+.|.+|+
T Consensus 175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~~~g~I~~~d 253 (314)
T d1pjxa_ 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFG 253 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEEC
T ss_pred EEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEC-CCCEEEEECCCCEEEEEE
T ss_conf 1369978877630379998602431177611676543015689971335666410257834-785799982799999996
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCEEEE-EECCCEEEEEECC
Q ss_conf 8999228998606853579999379999999-9589709999989
Q 000251 639 IWEGIPIRIYEISRFRLVDGKFSPDGASIIL-SDDVGQLYILNTG 682 (1784)
Q Consensus 639 l~tg~~i~tl~~h~~~ItsiafSPDGk~LAs-gs~DG~I~IWdi~ 682 (1784)
...+..+..+.......++++|.||++.|.+ ....|.|+.+++.
T Consensus 254 p~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 254 PDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp TTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf 999979999979999878999928989999998789919999789
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.01 E-value=7.5e-07 Score=58.10 Aligned_cols=264 Identities=12% Similarity=0.091 Sum_probs=137.0
Q ss_pred CCEEEEEECCCCCEEEEECC-------CCEEEEEECCCCEEEEEEEC----CCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 87899999799999999828-------74799997778918999806----78985999995799999998489789999
Q 000251 271 NAVYCAIFDRSGRYVITGSD-------DRLVKIWSMETAYCLASCRG----HEGDITDLAVSSNNALVASASNDCIIRVW 339 (1784)
Q Consensus 271 ~~VtsIaFSPDG~~LATGS~-------DGtIkIWDi~tg~~l~tL~g----H~~~VtsIafSPDg~lLASGS~DGtIrIW 339 (1784)
...-.++|+++|+++++... +|.|..|+..++........ ..+.-..++|.+++..|+++.....|...
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEE
T ss_conf 89717399699999999875402345299999998999959999777655678853069990799989999779839999
Q ss_pred ECCCCCEEEEEC-CCCC----CEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 899997058841-7788----55999952799950799999289909999367886655251379997324888788888
Q 000251 340 RLPDGLPISVLR-GHTA----AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 414 (1784)
Q Consensus 340 Dl~tgk~i~~l~-gH~~----~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s 414 (1784)
+..... ...+. ...+ ....+++.+++. +.++ ...+.+..|+.....
T Consensus 98 ~~~g~~-~~~~~~~~~g~~~~~pndl~~d~~G~---lyvt-d~~~~~~~~~~~~~~------------------------ 148 (314)
T d1pjxa_ 98 QTDGTF-EEIAKKDSEGRRMQGCNDCAFDYEGN---LWIT-APAGEVAPADYTRSM------------------------ 148 (314)
T ss_dssp ETTSCE-EECCSBCTTSCBCBCCCEEEECTTSC---EEEE-ECBCBCTTSCCCBTT------------------------
T ss_pred ECCCCE-EEEEECCCCCCCCCCCCEEEECCCCC---EEEE-CCCCCCCCCCCCCEE------------------------
T ss_conf 477747-99973343245457872789888998---9991-486675432011000------------------------
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 99999763899987799889994089509997389999989999985123303788880079982676233333457888
Q 000251 415 AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 494 (1784)
Q Consensus 415 ~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~ 494 (1784)
....+.+ ..+.++|..... ......-+.++|++++-...
T Consensus 149 -~~~~G~v--~~~~~dg~~~~~------------------------------~~~~~~pNGi~~~~d~d~~~-------- 187 (314)
T d1pjxa_ 149 -QEKFGSI--YCFTTDGQMIQV------------------------------DTAFQFPNGIAVRHMNDGRP-------- 187 (314)
T ss_dssp -SSSCEEE--EEECTTSCEEEE------------------------------EEEESSEEEEEEEECTTSCE--------
T ss_pred -CCCCCEE--EEEEECCCEEEE------------------------------ECCCCEEEEEEECCCCCCCE--------
T ss_conf -2688438--999525740375------------------------------07853221369978877630--------
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC-CCCCEEEE
Q ss_conf 88887555655668708998079809999278888885322211222456999999999999998300058-99971299
Q 000251 495 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP-TPRGVNMI 573 (1784)
Q Consensus 495 ~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~-h~~~VtsI 573 (1784)
...+++-+..+.|..|++....... . ... ...+.. .......+
T Consensus 188 -------------~~lyv~d~~~~~i~~~d~~~~g~~~---~-~~~-------------------~~~~~~~~~~~pdGi 231 (314)
T d1pjxa_ 188 -------------YQLIVAETPTKKLWSYDIKGPAKIE---N-KKV-------------------WGHIPGTHEGGADGM 231 (314)
T ss_dssp -------------EEEEEEETTTTEEEEEEEEETTEEE---E-EEE-------------------EEECCCCSSCEEEEE
T ss_pred -------------EEEEEEEECCCCEEEEECCCCCCCC---E-EEE-------------------EEECCCCCCCCCEEE
T ss_conf -------------3799986024311776116765430---1-568-------------------997133566641025
Q ss_pred EECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 9868997899995397399998899945999806999849999905999499999589929999689
Q 000251 574 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 640 (1784)
Q Consensus 574 afSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~ 640 (1784)
++..+|++.++....+.|.+|+...+..+..+.......++++|.|+...++++.+..+.|...++.
T Consensus 232 avD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 232 DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEECCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf 7834785799982799999996999979999979999878999928989999998789919999789
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.92 E-value=1.6e-06 Score=55.88 Aligned_cols=113 Identities=18% Similarity=0.185 Sum_probs=60.0
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE--CCCCCEEEEEEECCCCCEEEEEEC-CCCEEEEECCCCCEE
Q ss_conf 71299986899789999539739999889994599980--699984999990599949999958-992999968999228
Q 000251 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GHTESTYVLDVHPFNPRIAMSAGY-DGKTIVWDIWEGIPI 645 (1784)
Q Consensus 569 ~VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~--gH~~~VtsIafSPdd~~lLaSgs~-DG~IrIWDl~tg~~i 645 (1784)
....+++.+++..+++....+.|++|+. +|+.+..+. +.......|++.+ ++.++++-.. ++.|.+|+. +|+.+
T Consensus 158 ~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~-~G~~~ 234 (279)
T d1q7fa_ 158 FPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQ-DGQLI 234 (279)
T ss_dssp SEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECT-TSCEE
T ss_pred CCCEEEECCCEEEEEEECCCCCEEEEEC-CCCEEEEECCCCCCCCCCCCCCCC-CCEEEEEECCCCCEEEEECC-CCCEE
T ss_conf 6624320120017862013551002304-794445301132114876232314-78699997899808999999-99999
Q ss_pred EEEECCC--CCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 9986068--535799993799999999589709999989983
Q 000251 646 RIYEISR--FRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 685 (1784)
Q Consensus 646 ~tl~~h~--~~ItsiafSPDGk~LAsgs~DG~I~IWdi~sGe 685 (1784)
.++.... .....+++.+||.+ ++++.+..|.+|...+..
T Consensus 235 ~~~~~~~~~~~p~~vav~~dG~l-~V~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 235 SALESKVKHAQCFDVALMDDGSV-VLASKDYRLYIYRYVQLA 275 (279)
T ss_dssp EEEEESSCCSCEEEEEEETTTEE-EEEETTTEEEEEECSCCC
T ss_pred EEEECCCCCCCEEEEEEECCCCE-EEEECCCEEEEEEEEEEC
T ss_conf 99968888898837999089919-999189969998722035
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.81 E-value=3.7e-06 Score=53.29 Aligned_cols=241 Identities=9% Similarity=0.113 Sum_probs=124.4
Q ss_pred CEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEC------CCCCEEEEEECCCCC-EEEE-EECCCEEEEEECCC
Q ss_conf 789999979999999982874799997778918999806------789859999957999-9999-84897899998999
Q 000251 272 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG------HEGDITDLAVSSNNA-LVAS-ASNDCIIRVWRLPD 343 (1784)
Q Consensus 272 ~VtsIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~g------H~~~VtsIafSPDg~-lLAS-GS~DGtIrIWDl~t 343 (1784)
.-..++++++|+++++-..+..|++||.. |..+..+.. ....-..+++..+.. .+++ .+.++.|.+++. .
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred CCCEEEECCCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC-C
T ss_conf 90079994999899997998989999699-999998166578866422663000123445520000477531000002-5
Q ss_pred CCEEEEEC-CCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 97058841-77885599995279995079999928990999936788665525137999732488878888899999763
Q 000251 344 GLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 422 (1784)
Q Consensus 344 gk~i~~l~-gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V 422 (1784)
+.....+. ........+++.+++. ++++....+.+.+++... ..+..+.. ..+....
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~---i~v~~~~~~~~~~~~~~g-~~~~~~g~------------------~~~~~~~ 159 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGR---IIVVECKVMRVIIFDQNG-NVLHKFGC------------------SKHLEFP 159 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSC---EEEEETTTTEEEEECTTS-CEEEEEEC------------------TTTCSSE
T ss_pred CCCEEECCCCCCCCCCEECCCCCCC---EEEEEECCCEEEEECCCC-CEEECCCC------------------CCCCCCC
T ss_conf 6302403888642542000014784---799963263256762687-50100220------------------0102566
Q ss_pred EEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89998779988999408950999738999998999998512330378888007998267623333345788888887555
Q 000251 423 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 502 (1784)
Q Consensus 423 ~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~ 502 (1784)
..+++.+++..+++....+.|.+|+... ..+..+
T Consensus 160 ~~i~~d~~g~i~v~d~~~~~V~~~d~~G----------~~~~~~------------------------------------ 193 (279)
T d1q7fa_ 160 NGVVVNDKQEIFISDNRAHCVKVFNYEG----------QYLRQI------------------------------------ 193 (279)
T ss_dssp EEEEECSSSEEEEEEGGGTEEEEEETTC----------CEEEEE------------------------------------
T ss_pred CEEEECCCEEEEEEECCCCCEEEEECCC----------CEEEEE------------------------------------
T ss_conf 2432012001786201355100230479----------444530------------------------------------
Q ss_pred CCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEE
Q ss_conf 65566870899807980999927888888532221122245699999999999999830005899971299986899789
Q 000251 503 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 582 (1784)
Q Consensus 503 ~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~L 582 (1784)
+. .+.......+++.++|+.+
T Consensus 194 ------------g~-----------------------------------------------~g~~~~P~giavD~~G~i~ 214 (279)
T d1q7fa_ 194 ------------GG-----------------------------------------------EGITNYPIGVGINSNGEIL 214 (279)
T ss_dssp ------------SC-----------------------------------------------TTTSCSEEEEEECTTCCEE
T ss_pred ------------CC-----------------------------------------------CCCCCCCCCCCCCCCCEEE
T ss_conf ------------11-----------------------------------------------3211487623231478699
Q ss_pred EEEEC-CCEEEEEECCCCCEEEEEECC--CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 99953-973999988999459998069--998499999059994999995899299996899922
Q 000251 583 LAAIM-DCRICVWNAADGSLVHSLTGH--TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 644 (1784)
Q Consensus 583 aSgs~-DGsIrIWDl~tgkli~~L~gH--~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~ 644 (1784)
++-.. ++.|.+|+ .+|+.+.++... ......|++.+ ++.+++ +..+..|++|......+
T Consensus 215 Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~-dG~l~V-~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 215 IADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMD-DGSVVL-ASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp EEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEET-TTEEEE-EETTTEEEEEECSCCCC
T ss_pred EEECCCCCEEEEEC-CCCCEEEEEECCCCCCCEEEEEEEC-CCCEEE-EECCCEEEEEEEEEECC
T ss_conf 99789980899999-9999999996888889883799908-991999-91899699987220357
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.78 E-value=4.7e-06 Score=52.63 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=48.4
Q ss_pred ECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf 806798789999979999999982874799997778918999806789859999957999999984
Q 000251 266 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS 331 (1784)
Q Consensus 266 L~GH~~~VtsIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS 331 (1784)
+......+..++|+++|++.++-...+.|..|+..++.....+.........++|.++|+++++..
T Consensus 35 ~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~ 100 (319)
T d2dg1a1 35 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYL 100 (319)
T ss_dssp EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEEC
T ss_pred ECCCCCCCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEC
T ss_conf 146886747078999999999977999999998999959999948998703899999999999956
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.76 E-value=5.5e-06 Score=52.16 Aligned_cols=245 Identities=14% Similarity=0.097 Sum_probs=138.7
Q ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEEC----CCCEEEEECCC
Q ss_conf 98599999579999999848978999989999705884177885599995279995079999928----99099993678
Q 000251 313 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD----DGTCRIWDARY 388 (1784)
Q Consensus 313 ~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~----DGtIrIWDl~t 388 (1784)
..+..++|.++|++.++-...+.|..|+...+.....+.........++|.+++. ++++... .+.|...+...
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~---l~va~~~~~~~~~~i~~~~~~~ 116 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR---LFVCYLGDFKSTGGIFAATENG 116 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC---EEEEECTTSSSCCEEEEECTTS
T ss_pred CCCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCC---EEEEECCCCCCCEEEEEECCCC
T ss_conf 6747078999999999977999999998999959999948998703899999999---9999568973110499873899
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECC
Q ss_conf 86655251379997324888788888999997638999877998899940895099973899999899999851233037
Q 000251 389 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 468 (1784)
Q Consensus 389 g~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~g 468 (1784)
........ .......+..+++.++|.+.++...... . .
T Consensus 117 ~~~~~~~~------------------~~~~~~~~nd~~~d~~G~l~vtd~~~~~-----~-------------------~ 154 (319)
T d2dg1a1 117 DNLQDIIE------------------DLSTAYCIDDMVFDSKGGFYFTDFRGYS-----T-------------------N 154 (319)
T ss_dssp CSCEEEEC------------------SSSSCCCEEEEEECTTSCEEEEECCCBT-----T-------------------B
T ss_pred CEEEEECC------------------CCCCCCCCCCEEEEECCCEEECCCCCCC-----C-------------------C
T ss_conf 63644426------------------7775558752267730653200135400-----2-------------------5
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88880079982676233333457888888875556556687089980798099992788888853222112224569999
Q 000251 469 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 548 (1784)
Q Consensus 469 H~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~ 548 (1784)
..+. ...+.+++ +.+...
T Consensus 155 ~~g~--v~~~~~dg-----------------------------------~~~~~~------------------------- 172 (319)
T d2dg1a1 155 PLGG--VYYVSPDF-----------------------------------RTVTPI------------------------- 172 (319)
T ss_dssp CCEE--EEEECTTS-----------------------------------CCEEEE-------------------------
T ss_pred CCCE--EEEEECCC-----------------------------------CEEEEE-------------------------
T ss_conf 7421--57884166-----------------------------------335788-------------------------
Q ss_pred CCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEE-EEEECCCEEEEEECCC-CCEEEEE-------ECCCCCEEEEEEEC
Q ss_conf 9999999999830005899971299986899789-9995397399998899-9459998-------06999849999905
Q 000251 549 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV-LAAIMDCRICVWNAAD-GSLVHSL-------TGHTESTYVLDVHP 619 (1784)
Q Consensus 549 ~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~L-aSgs~DGsIrIWDl~t-gkli~~L-------~gH~~~VtsIafSP 619 (1784)
.......+.++|+++++.| ++-+..+.|..|++.. +...... .......-.+++..
T Consensus 173 ---------------~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~ 237 (319)
T d2dg1a1 173 ---------------IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS 237 (319)
T ss_dssp ---------------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT
T ss_pred ---------------EECCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEECC
T ss_conf ---------------61233010001012221278740468914799976998362024633331257764103641738
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEEEECC------CCCEEEEEECCCCCEEEEEEC------CCEEEEEEC
Q ss_conf 99949999958992999968999228998606------853579999379999999958------970999998
Q 000251 620 FNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS------RFRLVDGKFSPDGASIILSDD------VGQLYILNT 681 (1784)
Q Consensus 620 dd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h------~~~ItsiafSPDGk~LAsgs~------DG~I~IWdi 681 (1784)
++++.++....+.|.+|+. +|+.+..+... ...+++++|.+++..+++... .|.|+..+.
T Consensus 238 -~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~ 309 (319)
T d2dg1a1 238 -DDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 309 (319)
T ss_dssp -TCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred -CCCEEEEECCCCEEEEECC-CCCEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCEEEEEEEC
T ss_conf -9999999848998999979-99598899688757786750466778079988999857877699605999929
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.47 E-value=3.4e-05 Score=46.70 Aligned_cols=369 Identities=11% Similarity=0.002 Sum_probs=164.3
Q ss_pred CCCEEEEECCCCEEEEEEC-CCCEEEEEEECCCC-----------CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE
Q ss_conf 9999999828747999977-78918999806789-----------85999995799999998489789999899997058
Q 000251 281 SGRYVITGSDDRLVKIWSM-ETAYCLASCRGHEG-----------DITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 348 (1784)
Q Consensus 281 DG~~LATGS~DGtIkIWDi-~tg~~l~tL~gH~~-----------~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~ 348 (1784)
+|...++.+.++.|.-.|. ++|+.+-++..... .-..+++. +..|+.++.|+.+...|..+|+.+.
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w 139 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCEEEEEECCCCEEEEEHHHHHHHC
T ss_conf 99999942879959999489998668883588886544200247688862650--8869999179757821002112202
Q ss_pred EECCCC----CCEEEEEECCCCCCCEEEEEEE------CCCCEEEEECCCCCCCCEEECCCCCCCCCCCC----------
Q ss_conf 841778----8559999527999507999992------89909999367886655251379997324888----------
Q 000251 349 VLRGHT----AAVTAIAFSPRPGSVYQLLSSS------DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN---------- 408 (1784)
Q Consensus 349 ~l~gH~----~~VtsIafSPdg~~~~~LvSgs------~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~---------- 408 (1784)
...... ..++..-...++ .++.+. ..|.|..+|+.+++.+-+..............
T Consensus 140 ~~~~~~~~~~~~~t~~p~v~~~----~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~ 215 (571)
T d2ad6a1 140 EVEVCDPKVGSTLTQAPFVAKD----TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEETT----EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred CCCCCCCCCCCCEEECCEEECC----EEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 3444554432414536757588----588850234423467479998889858899704688644455554454433467
Q ss_pred -------CCCCCCCCCCCCCE-EEEEECCCCCEEEEEECCC----------------EEEEECCCCCCCCCCCCCCCCEE
Q ss_conf -------78888899999763-8999877998899940895----------------09997389999989999985123
Q 000251 409 -------MAPSSSAGPQSHQI-FCCAFNANGTVFVTGSSDT----------------LARVWNACKPNTDDSDQPNHEID 464 (1784)
Q Consensus 409 -------~~~~~s~~~h~~~V-~sIafSPdG~~LaSGs~DG----------------tIrIWDl~t~~~~~s~~~~~~i~ 464 (1784)
.............+ ...++.+....++.+..+. .+...|+.++ +.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG---------~~~W 286 (571)
T d2ad6a1 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG---------MAKW 286 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC---------CEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCH---------HHEE
T ss_conf 5555664567763143797520463305200834564034567522345663355653254412550---------1100
Q ss_pred EECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCEEEEEECCCCEEEEECCCCCCCCCC-----CC
Q ss_conf 3037888800799826762333334578888888755565566---870899807980999927888888532-----22
Q 000251 465 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC---HDNIVTCSRDGSAIIWIPRSRRSHPKA-----AR 536 (1784)
Q Consensus 465 ~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~---~~~LvSgS~DGtIrIWDl~t~~~~~~~-----~~ 536 (1784)
.+......+........ +.+...... ...++..+.+|.+.++|..+++..... ..
T Consensus 287 ~~q~~~~D~Wd~D~~~~-----------------~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~ 349 (571)
T d2ad6a1 287 GYQKTPHDEWDFAGVNQ-----------------MVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVN 349 (571)
T ss_dssp EEESSTTCSSCCCCCCC-----------------CEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred CCCCCCCCCCCCCCCCC-----------------CCEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCCC
T ss_conf 12456763314656556-----------------4114551157665404632656449998568983765554677532
Q ss_pred CCCCCCCCCCCCCCCC--CCCCCCCCEECCC-CCCC--EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC
Q ss_conf 1122245699999999--9999998300058-9997--129998689978999953973999988999459998069998
Q 000251 537 WTQAYHLKVPPPPMPP--QPPRGGPRQRILP-TPRG--VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES 611 (1784)
Q Consensus 537 w~~~~~l~~~~~~~~~--~~~~~~~~~~l~~-h~~~--VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~ 611 (1784)
+..........+.... ............. .... -...+++|+...++....+....+....... ..+....
T Consensus 350 ~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~----~~~~~~~ 425 (571)
T d2ad6a1 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPY----RAGQFFV 425 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCC----CTTSCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCC----CCCCCCC
T ss_conf 234556444632237643334566725777402224346652077888628976553443343002456----6775321
Q ss_pred EEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 49999905999499999589929999689992289986068535799993799999999589709999989983113
Q 000251 612 TYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688 (1784)
Q Consensus 612 VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~~ItsiafSPDGk~LAsgs~DG~I~IWdi~sGe~~~ 688 (1784)
...+...+ .... ......|.|.-+|+.+|+.+....... +...-.++..+.++++++.||.++.+|..+|+.+-
T Consensus 426 ~~~~~~~~-~~~~-~~~~~~G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW 499 (571)
T d2ad6a1 426 GATLAMYP-GPNG-PTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp CEEEEEEE-CTTS-TTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCCEEECC-CCCC-CCCCCCCCEEEECCCCCCEEEECCCCC-CCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEE
T ss_conf 56303314-6677-666775617885367784642767899-98756059669979997789969999999986878
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.46 E-value=3.5e-05 Score=46.55 Aligned_cols=67 Identities=9% Similarity=0.012 Sum_probs=33.8
Q ss_pred ECCC--CCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEC-C-----CEEEEEECCCCCE
Q ss_conf 9799--999999828747999977789189998067898599999579999999848-9-----7899998999970
Q 000251 278 FDRS--GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN-D-----CIIRVWRLPDGLP 346 (1784)
Q Consensus 278 FSPD--G~~LATGS~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~-D-----GtIrIWDl~tgk~ 346 (1784)
.+|| |+.+|..+ +|.|.+.++.++... .|..+.+.+...+|||||+.||.... + ..|.+++..++..
T Consensus 6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~ 80 (281)
T d1k32a2 6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI 80 (281)
T ss_dssp EEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred CCCCCCCCEEEEEE-CCCEEEEECCCCCEE-EEECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCE
T ss_conf 58887999999990-996899989999879-9766998526779878999899998628987722899998259952
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.41 E-value=4.7e-05 Score=45.71 Aligned_cols=101 Identities=8% Similarity=0.127 Sum_probs=63.4
Q ss_pred EECCC--CCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEE-CCC-----CEEEEECCCCC
Q ss_conf 99579--99999984897899998999970588417788559999527999507999992-899-----09999367886
Q 000251 319 AVSSN--NALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS-DDG-----TCRIWDARYSQ 390 (1784)
Q Consensus 319 afSPD--g~lLASGS~DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs-~DG-----tIrIWDl~tg~ 390 (1784)
..+|+ |+.+|..+ ++.|.+.++..+... .+..+.+.+...+|+|||+ .|+... .++ .|.+++..++.
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~---~iaf~~~~~~~~~~~~i~~~~~~~g~ 79 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGR---KIAIRVMRGSSLNTADLYFYNGENGE 79 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSS---EEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred CCCCCCCCCEEEEEE-CCCEEEEECCCCCEE-EEECCCCCCCCEEECCCCC---EEEEEEEECCCCCCEEEEEEEECCCC
T ss_conf 258887999999990-996899989999879-9766998526779878999---89999862898772289999825995
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 655251379997324888788888999997638999877998899940
Q 000251 391 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 438 (1784)
Q Consensus 391 ~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs 438 (1784)
..+.... ... ............|+|+|+.|+...
T Consensus 80 ~~~lt~~---~~~-----------~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 80 IKRITYF---SGK-----------STGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp EEECCCC---CEE-----------EETTEECSEEEEECTTCCEEEEEC
T ss_pred EEEEEEC---CCC-----------CCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 2886416---887-----------547644434310279887799997
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=98.31 E-value=7.6e-05 Score=44.27 Aligned_cols=374 Identities=12% Similarity=0.067 Sum_probs=161.1
Q ss_pred CCCEEEEECCCCEEEEEEC-CCCEEEEEEECCCC----------C-EEEEEECCC----CCEEEEEECCCEEEEEECCCC
Q ss_conf 9999999828747999977-78918999806789----------8-599999579----999999848978999989999
Q 000251 281 SGRYVITGSDDRLVKIWSM-ETAYCLASCRGHEG----------D-ITDLAVSSN----NALVASASNDCIIRVWRLPDG 344 (1784)
Q Consensus 281 DG~~LATGS~DGtIkIWDi-~tg~~l~tL~gH~~----------~-VtsIafSPD----g~lLASGS~DGtIrIWDl~tg 344 (1784)
+|.+.++.+..+.|...|. .+|+.+-++..... . -+.+++.++ ..+|+.++.|+.|.-.|..+|
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG 141 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEECCCCC
T ss_conf 99999951789968999579988778870387886434321356666516983279988629999807987685436568
Q ss_pred CEEEEECCCC----CCEEEEEECCCCCCCEEEEEEEC------CCCEEEEECCCCCCCCEEECCCCCCCCC---------
Q ss_conf 7058841778----85599995279995079999928------9909999367886655251379997324---------
Q 000251 345 LPISVLRGHT----AAVTAIAFSPRPGSVYQLLSSSD------DGTCRIWDARYSQFSPRIYIPRPSDAVA--------- 405 (1784)
Q Consensus 345 k~i~~l~gH~----~~VtsIafSPdg~~~~~LvSgs~------DGtIrIWDl~tg~~l~~i~l~~~~~~~~--------- 405 (1784)
+.+..+.... ..++.--..-++ .++.+.. .|.|.-+|+.+++.+-++....+.....
T Consensus 142 ~~~w~~~~~d~~~~~~~t~~P~v~~~----~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~ 217 (596)
T d1w6sa_ 142 ETVWKVENSDIKVGSTLTIAPYVVKD----KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN 217 (596)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEETT----EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred CEECCCCCCCCCCCCCCCCCCCEECC----EEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 41023101465556422458817777----58993023444335732898878885778865358865545554454333
Q ss_pred ---CCC------CCCCCCCCCCCCCEEEEEECCCCCEEEEEECCC----------------EEEEECCCCCCCCCCCCCC
Q ss_conf ---888------788888999997638999877998899940895----------------0999738999998999998
Q 000251 406 ---GRN------MAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDT----------------LARVWNACKPNTDDSDQPN 460 (1784)
Q Consensus 406 ---g~~------~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~DG----------------tIrIWDl~t~~~~~s~~~~ 460 (1784)
+.. .............-..+++.+...++..+..+. .|...|+.++
T Consensus 218 ~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG--------- 288 (596)
T d1w6sa_ 218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG--------- 288 (596)
T ss_dssp GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC---------
T ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------
T ss_conf 33454554666678873334787422562215677725405645556520235653334443010263550---------
Q ss_pred CCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEEEEECCCCEEEEECCCCCCCCCC-----
Q ss_conf 51233037888800799826762333334578888888755-565566870899807980999927888888532-----
Q 000251 461 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF-KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKA----- 534 (1784)
Q Consensus 461 ~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~-~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~----- 534 (1784)
+....+......+......... ..... .........++....+|.+.++|..+++.....
T Consensus 289 ~~~W~~Q~~~~D~Wd~d~~~~~--------------~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~ 354 (596)
T d1w6sa_ 289 EAKFGYQKTPHDEWDYAGVNVM--------------MLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDT 354 (596)
T ss_dssp CEEEEEESSTTCSSCCCCCCCC--------------EEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred CCCCCCCCEECCCCCCCCCCCE--------------EEEECCCCCCCCCCCEECCCCCCCEEEECCCCCCEEEECCCCCC
T ss_conf 0100124030256577654210--------------65310333355532100146543225406778825540144665
Q ss_pred CCCCCCCCCCCCCCCCCC--CCCCCCCCEECCCCC---CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC-
Q ss_conf 221122245699999999--999999830005899---97129998689978999953973999988999459998069-
Q 000251 535 ARWTQAYHLKVPPPPMPP--QPPRGGPRQRILPTP---RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH- 608 (1784)
Q Consensus 535 ~~w~~~~~l~~~~~~~~~--~~~~~~~~~~l~~h~---~~VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~gH- 608 (1784)
..|..........+.... ..........+.... ..-...+++|...+++....+.... |....... ..+.
T Consensus 355 ~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~-~~~~~~~~---~~g~~ 430 (596)
T d1w6sa_ 355 VNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMD-WEPFMLPY---KAGQF 430 (596)
T ss_dssp CCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEE-EEECCCCC---CTTSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCC-CCCCCCCC---CCCCC
T ss_conf 654454211245321274102357765535741544434467655477775597235334321-35434555---45653
Q ss_pred -CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCC
Q ss_conf -9984999990599949999958992999968999228998606853579999379999999958970999998998311
Q 000251 609 -TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 687 (1784)
Q Consensus 609 -~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~~ItsiafSPDGk~LAsgs~DG~I~IWdi~sGe~~ 687 (1784)
.+........|.+... ..-.-|.|.-||+.+|+.+.... ...++..-.++..|.+++.++.||.++.+|..+|+.+
T Consensus 431 ~~g~~~~~~~~~~g~~~--~~~~~G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~L 507 (596)
T d1w6sa_ 431 FVGATLNMYPGPKGDRQ--NYEGLGQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL 507 (596)
T ss_dssp CCCEEEEEEECTTSBTT--TTBCCEEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCCCCCCCCCCCCCCCC--CCCCCCEEEEEECCCCCEECCCC-CCCCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEE
T ss_conf 11442320247566745--57885538998078885623327-8888744146866997999789995999999998483
Q ss_pred C
Q ss_conf 3
Q 000251 688 K 688 (1784)
Q Consensus 688 ~ 688 (1784)
-
T Consensus 508 W 508 (596)
T d1w6sa_ 508 W 508 (596)
T ss_dssp E
T ss_pred E
T ss_conf 6
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=98.29 E-value=8.3e-05 Score=43.98 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=69.4
Q ss_pred CCCEEEEECCCCEEEEEECCCCEEEEEEECCCC----------CE-EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 999999982874799997778918999806789----------85-9999957999999984897899998999970588
Q 000251 281 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEG----------DI-TDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 349 (1784)
Q Consensus 281 DG~~LATGS~DGtIkIWDi~tg~~l~tL~gH~~----------~V-tsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~ 349 (1784)
+| .|..++.++.|.-.|..+|+.+-++..... .+ ..++. .+..++.+..++.|...|..+|+.+..
T Consensus 66 ~g-~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~ 142 (560)
T d1kv9a2 66 DG-VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (560)
T ss_dssp TT-EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CC-EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCE--ECCEEEEEECCCEEEEEECCCCCEEEC
T ss_conf 99-999978999599996899987988779877644544322465357504--688499973898799997778957730
Q ss_pred ECCCCC-CEEEEEECC---CCCCCEEEEEEEC------CCCEEEEECCCCCCCCEEECCC
Q ss_conf 417788-559999527---9995079999928------9909999367886655251379
Q 000251 350 LRGHTA-AVTAIAFSP---RPGSVYQLLSSSD------DGTCRIWDARYSQFSPRIYIPR 399 (1784)
Q Consensus 350 l~gH~~-~VtsIafSP---dg~~~~~LvSgs~------DGtIrIWDl~tg~~l~~i~l~~ 399 (1784)
...... ....+.-.| ++ .++.+.. .|.|..+|..+++.+-++....
T Consensus 143 ~~~~~~~~~~~~~~~p~v~~~----~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~ 198 (560)
T d1kv9a2 143 QQTTDPAKPYSITGAPRVVKG----KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVP 198 (560)
T ss_dssp EECSCTTSSCBCCSCCEEETT----EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSC
T ss_pred CCCCCCCCCEEEEEEEEEECC----CCCCCCCCEECCCCCEEEEEECCCCEEEEEEEECC
T ss_conf 576675540454320045068----51036531100135538999778862776641003
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=98.29 E-value=8.4e-05 Score=43.95 Aligned_cols=373 Identities=11% Similarity=0.078 Sum_probs=165.1
Q ss_pred CCCEEEEECCCCEEEEEECCCCEEEEEEECCC----------CCE-EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 99999998287479999777891899980678----------985-9999957999999984897899998999970588
Q 000251 281 SGRYVITGSDDRLVKIWSMETAYCLASCRGHE----------GDI-TDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 349 (1784)
Q Consensus 281 DG~~LATGS~DGtIkIWDi~tg~~l~tL~gH~----------~~V-tsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~ 349 (1784)
+| .|..++.++.|.-+|..+|+.+-++.... ..+ ..+++. ...++.++.|+.+...|..+|+.+..
T Consensus 77 ~g-~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~ 153 (573)
T d1kb0a2 77 DG-IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWH 153 (573)
T ss_dssp TT-EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CC-EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCCEEEEECCCCEEEECCCCCCCEEC
T ss_conf 99-9999789996999958999858786798876533334566566652387--88189973365406661624300101
Q ss_pred ECCCC---CCEEEEEECC---CCCCCEEEEEEEC------CCCEEEEECCCCCCCCEEECCCCCCCCCCC---------C
Q ss_conf 41778---8559999527---9995079999928------990999936788665525137999732488---------8
Q 000251 350 LRGHT---AAVTAIAFSP---RPGSVYQLLSSSD------DGTCRIWDARYSQFSPRIYIPRPSDAVAGR---------N 408 (1784)
Q Consensus 350 l~gH~---~~VtsIafSP---dg~~~~~LvSgs~------DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~---------~ 408 (1784)
..... ..+. +.-.| ++ .+++++. .|.|..+|..+++.+-++............ .
T Consensus 154 ~~~~~~~~~~~~-~~~~p~v~~~----~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t 228 (573)
T d1kb0a2 154 QNTFEGQKGSLT-ITGAPRVFKG----KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART 228 (573)
T ss_dssp EETTTTCCSSCB-CCSCCEEETT----EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred CCCCCCCCCEEE-EECCEEEEEC----CEEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 467568765078-6010279706----27992134455432218998568865102553104567777775432234323
Q ss_pred CCCCC--CCCCCCCCE-EEEEECCCCCEEEEEECCC-------------------EEEEECCCCCCCCCCCCCCCCEEEE
Q ss_conf 78888--899999763-8999877998899940895-------------------0999738999998999998512330
Q 000251 409 MAPSS--SAGPQSHQI-FCCAFNANGTVFVTGSSDT-------------------LARVWNACKPNTDDSDQPNHEIDVL 466 (1784)
Q Consensus 409 ~~~~~--s~~~h~~~V-~sIafSPdG~~LaSGs~DG-------------------tIrIWDl~t~~~~~s~~~~~~i~~l 466 (1784)
..... ........+ ...++.+....++.+.... .|...|+.++ +.....
T Consensus 229 ~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG---------~~~W~~ 299 (573)
T d1kb0a2 229 WDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG---------KYKWHY 299 (573)
T ss_dssp SCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC---------CEEEEE
T ss_pred CCCCCCEEECCCCCCCCCCCEECHHHCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCH---------HEEECC
T ss_conf 58877546637987623561185433815511477754441000345666666420799615500---------012024
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCC----CCCCCC
Q ss_conf 3788880079982676233333457888888875556556687089980798099992788888853222----112224
Q 000251 467 SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR----WTQAYH 542 (1784)
Q Consensus 467 ~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~----w~~~~~ 542 (1784)
......+............ .....-.....++.++.+|.+.++|..+++....... |.....
T Consensus 300 q~~~~d~wd~d~~~~~~l~--------------~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~ 365 (573)
T d1kb0a2 300 QETPGDNWDYTSTQPMILA--------------DIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD 365 (573)
T ss_dssp ESSTTCCSCCCCCSCCEEE--------------EEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred CCCCCCCCCCCCCCEEEEC--------------CEECCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 4367511200122014420--------------20017972362021255531688612434422311225664344421
Q ss_pred CCCCCCCCCCCCCCCCCCEECCC--CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC--C-EEEEEE
Q ss_conf 56999999999999998300058--999712999868997899995397399998899945999806999--8-499999
Q 000251 543 LKVPPPPMPPQPPRGGPRQRILP--TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTE--S-TYVLDV 617 (1784)
Q Consensus 543 l~~~~~~~~~~~~~~~~~~~l~~--h~~~VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~--~-VtsIaf 617 (1784)
....................... ....-..++++|+..+++....+....++.....+......+... . .....+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 445 (573)
T d1kb0a2 366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF 445 (573)
T ss_dssp TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE
T ss_pred CCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 12200000002346663378631567766655420887616985411154253115553235577875310355322233
Q ss_pred ECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 05999499999589929999689992289986068535799993799999999589709999989983113
Q 000251 618 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688 (1784)
Q Consensus 618 SPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~~ItsiafSPDGk~LAsgs~DG~I~IWdi~sGe~~~ 688 (1784)
+ ...- .....-|.|.-||+.+|+.+..+.... +...-..+..|.+|++++.||.++.||..+|+.+-
T Consensus 446 -~-~~~p-~~~~~~G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW 512 (573)
T d1kb0a2 446 -F-NAEP-PKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW 512 (573)
T ss_dssp -E-CSSC-CCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred -C-CCCC-CCCCCCCCEEEECCCCCCEEEEECCCC-CCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEE
T ss_conf -4-5688-777873617875787786670516889-88776079869989997799919999999886857
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.07 E-value=0.00024 Score=40.86 Aligned_cols=98 Identities=18% Similarity=0.133 Sum_probs=45.5
Q ss_pred EEEEECCCCCEEEE-EECCCEEEEEECCC------CCE--EEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 29998689978999-95397399998899------945--9998069998499999059994999995899299996899
Q 000251 571 NMIVWSLDNRFVLA-AIMDCRICVWNAAD------GSL--VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 641 (1784)
Q Consensus 571 tsIafSPDG~~LaS-gs~DGsIrIWDl~t------gkl--i~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~t 641 (1784)
+.++|+++++.++. .+..+.|..+++.. ++. ...+.+..+....+++.. ++.+.++.-..+.|..|+. +
T Consensus 151 Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V~~~dp-~ 228 (295)
T d2ghsa1 151 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT-D 228 (295)
T ss_dssp EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT-T
T ss_pred CEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECC-CCCEEEEEECCCCEEEECC-C
T ss_conf 4024658776689851566324676453555532453578841675556663267869-9998953207884688569-9
Q ss_pred CCEEEEEECCCCCEEEEEEC-CCCCEEEEE
Q ss_conf 92289986068535799993-799999999
Q 000251 642 GIPIRIYEISRFRLVDGKFS-PDGASIILS 670 (1784)
Q Consensus 642 g~~i~tl~~h~~~ItsiafS-PDGk~LAsg 670 (1784)
|+.+..+......+++++|- +|.+.|.+.
T Consensus 229 G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 229 GNHIARYEVPGKQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp CCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred CCEEEEECCCCCCEEEEEEECCCCCEEEEE
T ss_conf 928668638998527989828999999999
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.81 E-value=0.00065 Score=37.83 Aligned_cols=230 Identities=11% Similarity=0.006 Sum_probs=117.0
Q ss_pred EEEEECC-CCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC
Q ss_conf 9999979-999999982874799997778918999806789859999957999999984897899998999970588417
Q 000251 274 YCAIFDR-SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG 352 (1784)
Q Consensus 274 tsIaFSP-DG~~LATGS~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~l~g 352 (1784)
-+..|++ ++.+..+--..+.|..||..++... .+. ....+.++++.+++.++++ +.+ .|.++|..+++.......
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~ 96 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL 96 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred ECCEEECCCCEEEEEECCCCEEEEEECCCCEEE-EEE-CCCCCEEEEEECCCCEEEE-EEC-CCEEEECCCCEEEEEEEE
T ss_conf 587598999999999878999999989989599-998-9998179899659988999-737-638950464513578664
Q ss_pred ----CCCCEEEEEECCCCCCCEEEEEEEC----CCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf ----7885599995279995079999928----99099993678866552513799973248887888889999976389
Q 000251 353 ----HTAAVTAIAFSPRPGSVYQLLSSSD----DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC 424 (1784)
Q Consensus 353 ----H~~~VtsIafSPdg~~~~~LvSgs~----DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~s 424 (1784)
....+..+.+.|+|. +.++... .+.-.+|.+..++...... .-.....
T Consensus 97 ~~~~~~~~~nd~~vd~~G~---iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~---------------------~~~~~Ng 152 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGA---LWIGTMGRKAETGAGSIYHVAKGKVTKLFA---------------------DISIPNS 152 (295)
T ss_dssp STTCTTEEEEEEEECTTSC---EEEEEEETTCCTTCEEEEEEETTEEEEEEE---------------------EESSEEE
T ss_pred ECCCCCCCCEEEEECCCCC---EEEEECCCCCCCCCEEEEEECCCCEEEEEE---------------------CCCCCCE
T ss_conf 0478766101357979999---988742643133330576622996899865---------------------0687640
Q ss_pred EEECCCCCEEE-EEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99877998899-94089509997389999989999985123303788880079982676233333457888888875556
Q 000251 425 CAFNANGTVFV-TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 503 (1784)
Q Consensus 425 IafSPdG~~La-SGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~ 503 (1784)
++|+++++.++ +.+..+.|..|++..... . .. ..
T Consensus 153 ~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~--------~---~~---~~------------------------------- 187 (295)
T d2ghsa1 153 ICFSPDGTTGYFVDTKVNRLMRVPLDARTG--------L---PT---GK------------------------------- 187 (295)
T ss_dssp EEECTTSCEEEEEETTTCEEEEEEBCTTTC--------C---BS---SC-------------------------------
T ss_pred EEECCCCCEEEEEECCCCEEEEEEECCCCC--------C---CC---CC-------------------------------
T ss_conf 246587766898515663246764535555--------3---24---53-------------------------------
Q ss_pred CCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEE
Q ss_conf 55668708998079809999278888885322211222456999999999999998300058999712999868997899
Q 000251 504 SWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVL 583 (1784)
Q Consensus 504 ~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~La 583 (1784)
..+ .............+++..+|.+.+
T Consensus 188 -----~~~------------------------------------------------~~~~~~~~g~pdG~~vD~~GnlWv 214 (295)
T d2ghsa1 188 -----AEV------------------------------------------------FIDSTGIKGGMDGSVCDAEGHIWN 214 (295)
T ss_dssp -----CEE------------------------------------------------EEECTTSSSEEEEEEECTTSCEEE
T ss_pred -----EEE------------------------------------------------EECCCCCCCCCCCEEECCCCCEEE
T ss_conf -----578------------------------------------------------841675556663267869999895
Q ss_pred EEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEE-CCCCCEEEEEEC
Q ss_conf 99539739999889994599980699984999990-599949999958
Q 000251 584 AAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH-PFNPRIAMSAGY 630 (1784)
Q Consensus 584 Sgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafS-Pdd~~lLaSgs~ 630 (1784)
+....+.|..|+. .|+++..+.-....+++++|- ++...+++|...
T Consensus 215 a~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 215 ARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp EEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EEECCCCEEEECC-CCCEEEEECCCCCCEEEEEEECCCCCEEEEEECC
T ss_conf 3207884688569-9928668638998527989828999999999787
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.55 E-value=0.0015 Score=35.27 Aligned_cols=112 Identities=10% Similarity=-0.089 Sum_probs=64.6
Q ss_pred CCEEEEECCCCEEEEEECCCCEEEEEEECCC--------CCE-EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC
Q ss_conf 9999998287479999777891899980678--------985-9999957999999984897899998999970588417
Q 000251 282 GRYVITGSDDRLVKIWSMETAYCLASCRGHE--------GDI-TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG 352 (1784)
Q Consensus 282 G~~LATGS~DGtIkIWDi~tg~~l~tL~gH~--------~~V-tsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~l~g 352 (1784)
+..|.+++.++.|.-.|..+|+.+-++.... ..+ ..+++. +..++.++.++.+...|..+|+.+.....
T Consensus 68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~~~ 145 (582)
T d1flga_ 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEE--CCCEEEECCCCEEEEECCCCCCEEEEECC
T ss_conf 9999996899959999689998688876889876553334446774586--78158864887499811666630211102
Q ss_pred --CC-C---CEEEEEECC--CCCCCEEEEEE-------ECCCCEEEEECCCCCCCCEEECC
Q ss_conf --78-8---559999527--99950799999-------28990999936788665525137
Q 000251 353 --HT-A---AVTAIAFSP--RPGSVYQLLSS-------SDDGTCRIWDARYSQFSPRIYIP 398 (1784)
Q Consensus 353 --H~-~---~VtsIafSP--dg~~~~~LvSg-------s~DGtIrIWDl~tg~~l~~i~l~ 398 (1784)
+. . .-..+.+.+ ... .++.. ...+.|.-+|..+++.+-++...
T Consensus 146 ~~~~~~~~~~~~p~~~~~~~~~~---~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~ 203 (582)
T d1flga_ 146 ADHGAGYTMTGAPTIVKDGKTGK---VLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFV 203 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCC---EEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESS
T ss_pred CCCCCCCEEECCCEEECCCCEEE---EEEEECCCCCCCCCCCCEEEECCCCCCEEEEEECC
T ss_conf 47776612403866704884757---99990766543465463487238888678987121
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.37 E-value=0.0025 Score=33.71 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=60.1
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCC------------CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 99999059994999995899299996899------------922899860685357999937999999995897099999
Q 000251 613 YVLDVHPFNPRIAMSAGYDGKTIVWDIWE------------GIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 680 (1784)
Q Consensus 613 tsIafSPdd~~lLaSgs~DG~IrIWDl~t------------g~~i~tl~~h~~~ItsiafSPDGk~LAsgs~DG~I~IWd 680 (1784)
..+.++|++..+++++..+.++.|.|+.. .........+ ......+|...|.-..+-.-|.+|.-|+
T Consensus 278 HGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elg-lgPLht~fd~~g~aytslfids~v~kw~ 356 (459)
T d1fwxa2 278 HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG-LGPLHTAFDGRGNAYTSLFLDSQVVKWN 356 (459)
T ss_dssp CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCC-SCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred CCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECCCC-CCCCCCCCCCCCEEEEEEECCCEEEEEE
T ss_conf 733889999789993885895799982253566504688452179611357-6766203389842999861231699973
Q ss_pred CCCCCCCCCCCCCEEECCCCC-CEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECC
Q ss_conf 899831135533113317985-0688147862312211146768878756678888899951001010016622069879
Q 000251 681 TGQGESQKDAKYDQFFLGDYR-PLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRP 759 (1784)
Q Consensus 681 i~sGe~~~~~~~~~~fs~D~r-~Li~d~~g~Vld~~tql~p~l~~i~~~L~D~~~~p~p~~~q~l~~~r~~gv~~iAfSP 759 (1784)
+...... |..+.. +++ +. ++ -.|| +||.....+-...|
T Consensus 357 ~~~~~~~--------~~~~~~~~v~-~k----~~-------------------------v~y~---~gh~~~~~g~t~~~ 395 (459)
T d1fwxa2 357 IEDAIRA--------YAGEKVDPIK-DK----LD-------------------------VHYQ---PGHLKTVMGETLDA 395 (459)
T ss_dssp HHHHHHH--------HHTCSCCCEE-EE----EE-------------------------CSSC---EEEEEETTTTSTTC
T ss_pred CCHHHHH--------HCCCCCCCCE-EC----CC-------------------------CCCC---CCCCCCCCCCCCCC
T ss_conf 4405566--------4466677311-35----43-------------------------3457---88774576786788
Q ss_pred CCCEEEEEECCCCCCCEEEECC
Q ss_conf 9984999618998872684017
Q 000251 760 SSLKLAVGPDFSLDQGYQLQPL 781 (1784)
Q Consensus 760 DG~~LAvg~d~s~~~~i~l~~l 781 (1784)
||+||.+..-++.++.+.+.++
T Consensus 396 dgk~l~~~nk~skdrfl~vgpl 417 (459)
T d1fwxa2 396 TNDWLVCLSKFSKDRFLNVGPL 417 (459)
T ss_dssp CSSEEEEEESCCTTSSCCCCSS
T ss_pred CCCEEEEECCCCCCCCCCCCCC
T ss_conf 8878998034343446678889
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.30 E-value=0.0031 Score=33.15 Aligned_cols=71 Identities=20% Similarity=0.245 Sum_probs=31.0
Q ss_pred EEEEECCCCCEEEEECCCC-----------EEEEEECCCCEEEEE--E-ECCCCCEEEEEECCCCCEEEEEECC-CEEEE
Q ss_conf 9999979999999982874-----------799997778918999--8-0678985999995799999998489-78999
Q 000251 274 YCAIFDRSGRYVITGSDDR-----------LVKIWSMETAYCLAS--C-RGHEGDITDLAVSSNNALVASASND-CIIRV 338 (1784)
Q Consensus 274 tsIaFSPDG~~LATGS~DG-----------tIkIWDi~tg~~l~t--L-~gH~~~VtsIafSPDg~lLASGS~D-GtIrI 338 (1784)
...+...+|+.++.|+.+. .+.+||..+++.... . ..+.......++.+++.+++.|+.+ ..+.+
T Consensus 23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~ 102 (387)
T d1k3ia3 23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 102 (387)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred EEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCEEE
T ss_conf 78999259999999840576667887760689999888896866677898744525689994688689863688862167
Q ss_pred EECCCC
Q ss_conf 989999
Q 000251 339 WRLPDG 344 (1784)
Q Consensus 339 WDl~tg 344 (1784)
||..+.
T Consensus 103 yd~~~~ 108 (387)
T d1k3ia3 103 YDSSSD 108 (387)
T ss_dssp EEGGGT
T ss_pred ECCCCC
T ss_conf 567557
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.12 E-value=0.0046 Score=31.92 Aligned_cols=116 Identities=14% Similarity=0.212 Sum_probs=60.6
Q ss_pred CCEEEEEECCCCCEEEEEECC-----------CEEEEEECCCCCEE--EEE-CCCCCCEEEEEECCCCCCCEEEEEEECC
Q ss_conf 985999995799999998489-----------78999989999705--884-1778855999952799950799999289
Q 000251 313 GDITDLAVSSNNALVASASND-----------CIIRVWRLPDGLPI--SVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDD 378 (1784)
Q Consensus 313 ~~VtsIafSPDg~lLASGS~D-----------GtIrIWDl~tgk~i--~~l-~gH~~~VtsIafSPdg~~~~~LvSgs~D 378 (1784)
..+...+...++++++.|+.+ ..+.+||..++.-. ... ..+.....+.++.+++. +++.|+.+
T Consensus 20 ~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~---i~v~Gg~~ 96 (387)
T d1k3ia3 20 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ---IVVTGGND 96 (387)
T ss_dssp CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC---EEEECSSS
T ss_pred CCCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCC---EEEEECCC
T ss_conf 101789992599999998405766678877606899998888968666778987445256899946886---89863688
Q ss_pred -CCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECC------CEEEEECCCC
Q ss_conf -90999936788665525137999732488878888899999763899987799889994089------5099973899
Q 000251 379 -GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD------TLARVWNACK 450 (1784)
Q Consensus 379 -GtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~D------GtIrIWDl~t 450 (1784)
..+.+||..+......-.+ .......+++..+||++++.|+.. ..+.+||..+
T Consensus 97 ~~~~~~yd~~~~~w~~~~~~-------------------~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~ 156 (387)
T d1k3ia3 97 AKKTSLYDSSSDSWIPGPDM-------------------QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 156 (387)
T ss_dssp TTCEEEEEGGGTEEEECCCC-------------------SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred CCCEEEECCCCCCCCCCCCC-------------------CCCCCCCCEEEECCCCEEEECCCCCCCCCCCEEEEECCCC
T ss_conf 86216756755744215656-------------------6421013035531782665213663335432056634888
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.76 E-value=0.0091 Score=29.90 Aligned_cols=83 Identities=12% Similarity=-0.030 Sum_probs=55.4
Q ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCC-EEEEEECCCCC-
Q ss_conf 9739999889994599980699984999990599949999958992999968999228998606853-57999937999-
Q 000251 588 DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR-LVDGKFSPDGA- 665 (1784)
Q Consensus 588 DGsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~~-ItsiafSPDGk- 665 (1784)
.|.|.-+|+.+|+.+............. .+. .+.+++.++.||.++.+|..+|+.+..+...... ..-+.|..||+
T Consensus 443 ~G~l~AiD~~TG~~~W~~~~~~~~~~g~-l~T-agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkq 520 (571)
T d2ad6a1 443 MGQIRAFDLTTGKAKWTKWEKFAAWGGT-LYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ 520 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBC-EEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCCEEEECCCCCCEEEECCCCCCCCCCE-EEE-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCEEEEECCEE
T ss_conf 5617885367784642767899987560-596-69979997789969999999986878998999965156489889999
Q ss_pred EEEEEEC
Q ss_conf 9999958
Q 000251 666 SIILSDD 672 (1784)
Q Consensus 666 ~LAsgs~ 672 (1784)
||++...
T Consensus 521 Yi~v~~g 527 (571)
T d2ad6a1 521 YIGSMYG 527 (571)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
T ss_conf 9999906
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.65 E-value=0.011 Score=29.40 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=43.9
Q ss_pred CCEEEEECCCCEEEEEECCCCEEEEEEECCCC-CEEEEEEC---CCCCEEEEEEC------CCEEEEEECCCCCEEEEEC
Q ss_conf 99999982874799997778918999806789-85999995---79999999848------9789999899997058841
Q 000251 282 GRYVITGSDDRLVKIWSMETAYCLASCRGHEG-DITDLAVS---SNNALVASASN------DCIIRVWRLPDGLPISVLR 351 (1784)
Q Consensus 282 G~~LATGS~DGtIkIWDi~tg~~l~tL~gH~~-~VtsIafS---PDg~lLASGS~------DGtIrIWDl~tgk~i~~l~ 351 (1784)
+..++.+..++.|.-.|..+|+++........ .-..+.-. .++ .++.+.. .|.|..+|..+|+.+..+.
T Consensus 117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEECCCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEEEECC-CCCCCCCCEECCCCCEEEEEECCCCEEEEEEE
T ss_conf 88499973898799997778957730576675540454320045068-51036531100135538999778862776641
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.65 E-value=0.011 Score=29.38 Aligned_cols=106 Identities=8% Similarity=0.017 Sum_probs=63.5
Q ss_pred CCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCC------------CEEEEEECCCCCEEEEEEECCCCCEEEEEEC
Q ss_conf 58999712999868997899995-3973999988999------------4599980699984999990599949999958
Q 000251 564 LPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADG------------SLVHSLTGHTESTYVLDVHPFNPRIAMSAGY 630 (1784)
Q Consensus 564 ~~h~~~VtsIafSPDG~~LaSgs-~DGsIrIWDl~tg------------kli~~L~gH~~~VtsIafSPdd~~lLaSgs~ 630 (1784)
.........+.++|||+++++++ .+.++.|+|+..- ..+......-+ -..-+|.. .+....|.--
T Consensus 271 IPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglg-PLht~fd~-~g~aytslfi 348 (459)
T d1fwxa2 271 IPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG-PLHTAFDG-RGNAYTSLFL 348 (459)
T ss_dssp EEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSC-EEEEEECT-TSEEEEEETT
T ss_pred EECCCCCCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECCCCCC-CCCCCCCC-CCEEEEEEEC
T ss_conf 865898773388999978999388589579998225356650468845217961135767-66203389-8429998612
Q ss_pred CCCEEEEECCCC----------CEEEEEECCCCCEEEE------EECCCCCEEEEEEC
Q ss_conf 992999968999----------2289986068535799------99379999999958
Q 000251 631 DGKTIVWDIWEG----------IPIRIYEISRFRLVDG------KFSPDGASIILSDD 672 (1784)
Q Consensus 631 DG~IrIWDl~tg----------~~i~tl~~h~~~Itsi------afSPDGk~LAsgs~ 672 (1784)
|..|.-|++... ..+..+..|-. +-.+ ...|||++|++...
T Consensus 349 ds~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~-~gh~~~~~g~t~~~dgk~l~~~nk 405 (459)
T d1fwxa2 349 DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLSK 405 (459)
T ss_dssp TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEES
T ss_pred CCEEEEEECCHHHHHHCCCCCCCCEECCCCCCC-CCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 316999734405566446667731135433457-887745767867888878998034
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=95.98 E-value=0.024 Score=26.92 Aligned_cols=82 Identities=10% Similarity=0.125 Sum_probs=55.7
Q ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCE-EEEEECCCCC-E
Q ss_conf 7399998899945999806999849999905999499999589929999689992289986068535-7999937999-9
Q 000251 589 CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRL-VDGKFSPDGA-S 666 (1784)
Q Consensus 589 GsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~~I-tsiafSPDGk-~ 666 (1784)
|.|.-||+.+|+.+........ ...-..+- .+.++++++.||.++.+|..+|+.+..+....... .-+.|..||+ |
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p-~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQY 534 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSP-WNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CCEEEECCCCCCEEEEECCCCC-CCCCEEEE-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEE
T ss_conf 6178757877866705168898-87760798-699899977999199999998868579989899451677999899999
Q ss_pred EEEEEC
Q ss_conf 999958
Q 000251 667 IILSDD 672 (1784)
Q Consensus 667 LAsgs~ 672 (1784)
|++...
T Consensus 535 v~v~~G 540 (573)
T d1kb0a2 535 VSVAVG 540 (573)
T ss_dssp EEEEEC
T ss_pred EEEEEC
T ss_conf 999937
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.96 E-value=0.025 Score=26.86 Aligned_cols=271 Identities=12% Similarity=0.087 Sum_probs=149.6
Q ss_pred CCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCC
Q ss_conf 87479999777891899980678985999995799999998489789999899997058841778855999952799950
Q 000251 290 DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV 369 (1784)
Q Consensus 290 ~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~ 369 (1784)
....|.|.|+.......+-.- .-.+.-.+|..+.||.-+ ..++.++|+++...++.+. ....|.--.|..+.
T Consensus 43 ~~~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~-~~e~VvfWkWis~~--- 114 (327)
T d1utca2 43 EQAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN--- 114 (327)
T ss_dssp TEEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCEEEESSSS---
T ss_pred CCCEEEEEECCCCCCCEECCC---CHHHHHCCCCCCEEEEEC-CCEEEEEEHHHHHHHCEEE-CCCCCEEEEECCCC---
T ss_conf 984399998899876331443---616653088875799962-8868998446822111587-68885799944798---
Q ss_pred EEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE-------CCCE
Q ss_conf 799999289909999367886655251379997324888788888999997638999877998899940-------8950
Q 000251 370 YQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-------SDTL 442 (1784)
Q Consensus 370 ~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs-------~DGt 442 (1784)
.|+..+. ..|.-|+++.... +.....+.. .-...+|..-..+++.++++..+ -.|.
T Consensus 115 -~L~lVT~-taVYHW~~~g~s~-P~k~fdR~~--------------~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~ 177 (327)
T d1utca2 115 -TVALVTD-NAVYHWSMEGESQ-PVKMFDRHS--------------SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 177 (327)
T ss_dssp -EEEEECS-SEEEEEESSSSCC-CEEEEECCG--------------GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEE
T ss_pred -EEEEECC-CCEEEECCCCCCC-CHHHHHHCC--------------CCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEE
T ss_conf -8999918-8169973569998-526623210--------------1248638998989999889999571378830588
Q ss_pred EEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE---ECCCC
Q ss_conf 999738999998999998512330378888007998267623333345788888887555655668708998---07980
Q 000251 443 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGS 519 (1784)
Q Consensus 443 IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSg---S~DGt 519 (1784)
+.+|.... +..+.+.||......+.+..+... ...++.+ ...+.
T Consensus 178 mQLYS~er----------~~sQ~ieGhaa~F~~~~~~g~~~~-----------------------~~lf~fa~r~~~~~k 224 (327)
T d1utca2 178 MQLYSVDR----------KVSQPIEGHAASFAQFKMEGNAEE-----------------------STLFCFAVRGQAGGK 224 (327)
T ss_dssp EEEEETTT----------TEEEEECCSEEEEEEECCTTCSSC-----------------------EEEEEEEEEETTEEE
T ss_pred EEEEEECC----------CCCCCCCCEEEEEEEEECCCCCCC-----------------------CEEEEEEECCCCCCE
T ss_conf 88998022----------867523203465688870799887-----------------------309999987898747
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 99992788888853222112224569999999999999983000589997129998689978999953973999988999
Q 000251 520 AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG 599 (1784)
Q Consensus 520 IrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DGsIrIWDl~tg 599 (1784)
+.|.++........ ....+...+-.++ ....+-..++..|+....+...+.-|.|++||+.++
T Consensus 225 LhIiEig~~~~g~~-~f~kk~vdi~fpp----------------ea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg 287 (327)
T d1utca2 225 LHIIEVGTPPTGNQ-PFPKKAVDVFFPP----------------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG 287 (327)
T ss_dssp EEEEECSCCCTTCC-CCCCEEEECCCCT----------------TCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC
T ss_pred EEEEECCCCCCCCC-CCCCEEEEEECCC----------------CCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC
T ss_conf 99998688755788-8753268877796----------------346884779996433799999966758999975666
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 4599980699984999990599949999958992999
Q 000251 600 SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIV 636 (1784)
Q Consensus 600 kli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrI 636 (1784)
.++..-+-....|...+-....+-++ +...+|.|.-
T Consensus 288 t~i~~nRIs~~~iF~~a~~~~~~Gi~-~VNr~GqVl~ 323 (327)
T d1utca2 288 TCIYMNRISGETIFVTAPHEATAGII-GVNRKGQVLS 323 (327)
T ss_dssp CEEEEEECCSSCEEEEEEETTTTEEE-EEETTSEEEE
T ss_pred CEEEEEECCCCCEEEECCCCCCCEEE-EECCCCEEEE
T ss_conf 28999404788448962678886089-9878976999
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=95.91 E-value=0.026 Score=26.71 Aligned_cols=331 Identities=9% Similarity=-0.028 Sum_probs=152.2
Q ss_pred CCEEEEECCCCEEEEEECCCCEEEEEEECCC----CCEEEEEECCCCCEEEEEEC------CCEEEEEECCCCCEEEEEC
Q ss_conf 9999998287479999777891899980678----98599999579999999848------9789999899997058841
Q 000251 282 GRYVITGSDDRLVKIWSMETAYCLASCRGHE----GDITDLAVSSNNALVASASN------DCIIRVWRLPDGLPISVLR 351 (1784)
Q Consensus 282 G~~LATGS~DGtIkIWDi~tg~~l~tL~gH~----~~VtsIafSPDg~lLASGS~------DGtIrIWDl~tgk~i~~l~ 351 (1784)
+.+|+.++.|+.|.-.|..+|+++..+.... ..++.--.. .+..++++.. .|.|+-+|+.+|+.+-.+.
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v-~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEEECCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCE-ECCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEE
T ss_conf 62999980798768543656841023101465556422458817-77758993023444335732898878885778865
Q ss_pred CCC-------------------------------------CCE-EEEEECCCCCCCEEEEEEEC----------------
Q ss_conf 778-------------------------------------855-99995279995079999928----------------
Q 000251 352 GHT-------------------------------------AAV-TAIAFSPRPGSVYQLLSSSD---------------- 377 (1784)
Q Consensus 352 gH~-------------------------------------~~V-tsIafSPdg~~~~~LvSgs~---------------- 377 (1784)
... ..+ ..+++.+..+ ++..+..
T Consensus 200 t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~---lvy~~tg~~~p~~~~~r~g~n~y 276 (596)
T d1w6sa_ 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN---LIYFGTGNPAPWNETMRPGDNKW 276 (596)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT---EEEEECCCCSCSCGGGSCSCCTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC---EEECCCCCCCCCCCCCCCCCCCC
T ss_conf 358865545554454333334545546666788733347874225622156777---25405645556520235653334
Q ss_pred CCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-ECCCC---CEEEEEECCCEEEEECCCCCCC
Q ss_conf 9909999367886655251379997324888788888999997638999-87799---8899940895099973899999
Q 000251 378 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA-FNANG---TVFVTGSSDTLARVWNACKPNT 453 (1784)
Q Consensus 378 DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIa-fSPdG---~~LaSGs~DGtIrIWDl~t~~~ 453 (1784)
...|...|+.+++..-.+........- . .....+..+. ...+| ..++....+|.+.++|..+++.
T Consensus 277 s~sivAlD~~TG~~~W~~Q~~~~D~Wd----------~-d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~ 345 (596)
T d1w6sa_ 277 TMTIFGRDADTGEAKFGYQKTPHDEWD----------Y-AGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL 345 (596)
T ss_dssp SSEEEEEETTTCCEEEEEESSTTCSSC----------C-CCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCC----------C-CCCCCEEEEECCCCCCCCCCCEECCCCCCCEEEECCCCCCE
T ss_conf 443010263550010012403025657----------7-65421065310333355532100146543225406778825
Q ss_pred CCCCCCCCCEEEECCC--CCCCEEEEECCCCCCCCCCCCCCCCCCCCCC--C-----CCCC------CCCCEEEEEECCC
Q ss_conf 8999998512330378--8880079982676233333457888888875--5-----5655------6687089980798
Q 000251 454 DDSDQPNHEIDVLSGH--ENDVNYVQFSGCAVASRFSLADSSKEDSTPK--F-----KNSW------FCHDNIVTCSRDG 518 (1784)
Q Consensus 454 ~~s~~~~~~i~~l~gH--~~~V~sIafspdglas~~~~~~s~~~~~~~~--~-----~~~~------~~~~~LvSgS~DG 518 (1784)
+...... ......+ .+.................... + ...| .....++....+.
T Consensus 346 ---------i~~~~~~~~~~~~~~~--d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~ 414 (596)
T d1w6sa_ 346 ---------VSANKLDDTVNVFKSV--DLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHI 414 (596)
T ss_dssp ---------EEEEESSTTCCSEEEE--CTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECE
T ss_pred ---------EEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCC
T ss_conf ---------5401446656544542--11245321274102357765535741544434467655477775597235334
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 09999278888885322211222456999999999999998300058999712999868997899995397399998899
Q 000251 519 SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 598 (1784)
Q Consensus 519 tIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DGsIrIWDl~t 598 (1784)
.. .|...... . ..+. ............+.+..... -.-|.|.-||+.+
T Consensus 415 ~~-~~~~~~~~----------------------~--~~g~------~~~g~~~~~~~~~~g~~~~~-~~~G~l~A~D~~T 462 (596)
T d1w6sa_ 415 CM-DWEPFMLP----------------------Y--KAGQ------FFVGATLNMYPGPKGDRQNY-EGLGQIKAYNAIT 462 (596)
T ss_dssp EE-EEEECCCC----------------------C--CTTS------CCCCEEEEEEECTTSBTTTT-BCCEEEEEECTTT
T ss_pred CC-CCCCCCCC----------------------C--CCCC------CCCCCCCCCCCCCCCCCCCC-CCCCEEEEEECCC
T ss_conf 32-13543455----------------------5--4565------31144232024756674557-8855389980788
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCE-EEEEECCCCC-EEEEEEC
Q ss_conf 945999806999849999905999499999589929999689992289986068535-7999937999-9999958
Q 000251 599 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRL-VDGKFSPDGA-SIILSDD 672 (1784)
Q Consensus 599 gkli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~~I-tsiafSPDGk-~LAsgs~ 672 (1784)
|+.+....... .+..-..+. .+.+++.|..||.++.+|..+|+.+..+....... .-+.|..||+ ||++...
T Consensus 463 G~~~W~~~~~~-~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav~~G 536 (596)
T d1w6sa_ 463 GDYKWEKMERF-AVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG 536 (596)
T ss_dssp CCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCEECCCCCCC-CCCCCEEEE-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEEEEEEC
T ss_conf 85623327888-874414686-699799978999599999999848369989999540776899899999999936
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.48 E-value=0.069 Score=23.80 Aligned_cols=62 Identities=18% Similarity=0.135 Sum_probs=38.4
Q ss_pred CCCCEEEEEECCCCCEEEEE-----CCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf 79878999997999999998-----2874799997778918999806789859999957999999984
Q 000251 269 HRNAVYCAIFDRSGRYVITG-----SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS 331 (1784)
Q Consensus 269 H~~~VtsIaFSPDG~~LATG-----S~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS 331 (1784)
+.-.+..+++||+++++|.+ ++...|++.|+.+++.+..... ......++|.+|++.|+...
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~ 189 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNA 189 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEE
T ss_pred CCCEECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCCCC-CCCCCCEEECCCCCEEEEEE
T ss_conf 44133425853789879999556667210467741676403144222-43236417857998999997
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.52 E-value=0.14 Score=21.60 Aligned_cols=71 Identities=13% Similarity=-0.039 Sum_probs=40.9
Q ss_pred CCEEEEECCCCEEEEEECCCCEEEEEEEC--C-------CCCEEEEEECCCCCEEEEE-------ECCCEEEEEECCCCC
Q ss_conf 99999982874799997778918999806--7-------8985999995799999998-------489789999899997
Q 000251 282 GRYVITGSDDRLVKIWSMETAYCLASCRG--H-------EGDITDLAVSSNNALVASA-------SNDCIIRVWRLPDGL 345 (1784)
Q Consensus 282 G~~LATGS~DGtIkIWDi~tg~~l~tL~g--H-------~~~VtsIafSPDg~lLASG-------S~DGtIrIWDl~tgk 345 (1784)
+..++.++.++.+.-.|..+|+.+..... + ..++. +.-...+..++.. +..+.|.-+|..+|+
T Consensus 117 ~~~i~~~t~~~~l~alda~tG~~~W~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~ 195 (582)
T d1flga_ 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTI-VKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEE-EECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred CCCEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEECCCEE-ECCCCEEEEEEEECCCCCCCCCCCCEEEECCCCCC
T ss_conf 78158864887499811666630211102477766124038667-04884757999907665434654634872388886
Q ss_pred EEEEECCC
Q ss_conf 05884177
Q 000251 346 PISVLRGH 353 (1784)
Q Consensus 346 ~i~~l~gH 353 (1784)
.+..+...
T Consensus 196 ~~W~~~~~ 203 (582)
T d1flga_ 196 EIWMRPFV 203 (582)
T ss_dssp EEEEEESS
T ss_pred EEEEEECC
T ss_conf 78987121
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.26 E-value=0.15 Score=21.39 Aligned_cols=104 Identities=8% Similarity=0.050 Sum_probs=58.0
Q ss_pred CEEEEEECCCCCEEEEEEC-----CCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECC----------
Q ss_conf 8599999579999999848-----9789999899997058841778855999952799950799999289----------
Q 000251 314 DITDLAVSSNNALVASASN-----DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD---------- 378 (1784)
Q Consensus 314 ~VtsIafSPDg~lLASGS~-----DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~D---------- 378 (1784)
.+..++++|+++++|.+-. ...|++.|+.+++.+..... ......++|++++. .|+....+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~---~~~Y~~~~~~~~~~~~~~ 201 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGK---GMFYNAYPQQDGKSDGTE 201 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSS---EEEEEECCCCSSCCSSSC
T ss_pred EECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCCCC-CCCCCCEEECCCCC---EEEEEEECCCCCCCCCCC
T ss_conf 33425853789879999556667210467741676403144222-43236417857998---999997626667654433
Q ss_pred ------CCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE
Q ss_conf ------90999936788665525137999732488878888899999763899987799889994
Q 000251 379 ------GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 437 (1784)
Q Consensus 379 ------GtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSG 437 (1784)
..|.++.+.+......+..... .....+..+..+.++.+++..
T Consensus 202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~----------------d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 202 TSTNLHQKLYYHVLGTDQSEDILCAEFP----------------DEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCT----------------TCTTCEEEEEECTTSCEEEEE
T ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCC----------------CCCCEEEEEECCCCCCEEEEE
T ss_conf 3457863389998898865310022323----------------577257753026876245687
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.40 E-value=0.19 Score=20.75 Aligned_cols=75 Identities=11% Similarity=0.035 Sum_probs=28.6
Q ss_pred EEEEECCCCCEEEEE-ECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE
Q ss_conf 299986899789999-539739999889994599980699984999990599949999958992999968999228998
Q 000251 571 NMIVWSLDNRFVLAA-IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIY 648 (1784)
Q Consensus 571 tsIafSPDG~~LaSg-s~DGsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl 648 (1784)
..+++++.+..|..+ ...+.|...++........+.+... ..+|++. ++.+.++-...+.|...+..+++.+..+
T Consensus 170 ~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~ 245 (263)
T d1npea_ 170 NGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTF 245 (263)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEECCCCC-CEEEEEE--CCEEEEEECCCCEEEEEECCCCCCCEEE
T ss_conf 30799504758999928999999999999976999889998-6899999--9999999999997999989899510698
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.23 E-value=0.2 Score=20.64 Aligned_cols=17 Identities=6% Similarity=0.001 Sum_probs=6.6
Q ss_pred CCEEEEEECCCCCEEEE
Q ss_conf 97399998899945999
Q 000251 588 DCRICVWNAADGSLVHS 604 (1784)
Q Consensus 588 DGsIrIWDl~tgkli~~ 604 (1784)
.+.|...+..+++.+..
T Consensus 228 ~~~I~~~~~~~g~~~~~ 244 (263)
T d1npea_ 228 TNSVIAMDLAISKEMDT 244 (263)
T ss_dssp TTEEEEEETTTTEEEEE
T ss_pred CCEEEEEECCCCCCCEE
T ss_conf 99799998989951069
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.76 E-value=0.22 Score=20.35 Aligned_cols=74 Identities=9% Similarity=-0.032 Sum_probs=31.1
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCC--CCEEEEEECCCCCEEEEE-ECCCEEEEEECCCCC
Q ss_conf 9849999905999499999589929999689992289986068--535799993799999999-589709999989983
Q 000251 610 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR--FRLVDGKFSPDGASIILS-DDVGQLYILNTGQGE 685 (1784)
Q Consensus 610 ~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~--~~ItsiafSPDGk~LAsg-s~DG~I~IWdi~sGe 685 (1784)
....++++.+.++++.++-...+.|...++........+.... .....+++. +.+|..+ ..++.|+..+..+|+
T Consensus 164 ~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS 240 (266)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEE--CCEEEEEECCCCEEEEEECCCCC
T ss_conf 201699861335699995289679999989999779999389855664799998--99999998999969999998996
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.61 E-value=0.27 Score=19.72 Aligned_cols=79 Identities=11% Similarity=0.049 Sum_probs=34.6
Q ss_pred EEEEEECCCCCEEEEE-ECCCEEEEEECCCCCEEEEEECCC--CCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEE
Q ss_conf 1299986899789999-539739999889994599980699--9849999905999499999589929999689992289
Q 000251 570 VNMIVWSLDNRFVLAA-IMDCRICVWNAADGSLVHSLTGHT--ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 646 (1784)
Q Consensus 570 VtsIafSPDG~~LaSg-s~DGsIrIWDl~tgkli~~L~gH~--~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~ 646 (1784)
.+.+++.+.+..|..+ ...+.|...++........+.... ....++++. ++.+..+-..++.|...+..++....
T Consensus 166 p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~ 243 (266)
T d1ijqa1 166 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVN 243 (266)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred EEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEE--CCEEEEEECCCCEEEEEECCCCCCEE
T ss_conf 1699861335699995289679999989999779999389855664799998--99999998999969999998996159
Q ss_pred EEEC
Q ss_conf 9860
Q 000251 647 IYEI 650 (1784)
Q Consensus 647 tl~~ 650 (1784)
.+..
T Consensus 244 ~~~~ 247 (266)
T d1ijqa1 244 LLAE 247 (266)
T ss_dssp EEEC
T ss_pred EEEC
T ss_conf 9776
|
| >d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: Tudor/PWWP/MBT family: Tudor domain domain: Survival motor neuron protein 1, smn species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.56 E-value=0.51 Score=17.81 Aligned_cols=56 Identities=23% Similarity=0.460 Sum_probs=39.9
Q ss_pred CCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 797768605884137889999579999988157999999999734699984999954345867435898
Q 000251 1591 RNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSD 1659 (1784)
Q Consensus 1591 ~~w~~g~rf~m~~e~e~~~~~~~~~G~I~~~~~~~p~~p~S~W~~l~V~Wd~~~~~~~rvSPWEie~~~ 1659 (1784)
+.|++|+.|...|.. |+.||.++|.++.+.. ..+.|.+..= +..+.|+.=+|.|+.
T Consensus 2 ~~wkvG~~C~A~~s~----Dg~wYRA~I~~v~~~~--------~~~~V~fvDY-Gn~e~V~~~~l~~~~ 57 (59)
T d1mhna_ 2 QQWKVGDKCSAIWSE----DGCIYPATIASIDFKR--------ETCVVVYTGY-GNREEQNLSDLLSPI 57 (59)
T ss_dssp CCCCTTCEEEEECTT----TSCEEEEEEEEEETTT--------TEEEEEETTT-TEEEEEEGGGCBCTT
T ss_pred CCCCCCCEEEEEECC----CCCEEEEEEEEECCCC--------CEEEEEEEEC-CCEEEEEHHHCCCCC
T ss_conf 768869999999887----8989899999974889--------9999999808-998998899976988
|