Citrus Sinensis ID: 000275

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------174

MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLEVVN

cccHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHcHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHcccccccccHHHHHHHHHHHHHHcc

ccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccccccccccccHHHHccHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccHHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHccccccHHHHccHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccEEEEccccccHHHHHHHHHHHHHHHcHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccHHcccccccccccHcccccccccccccccccHHHccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccHHccHHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHccHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHcccccccccccEEHHHHHHHHHHcc

MSEEEKLLKEAkklpwedrllhKNWKVRNEANIDLAALcdsitdpkdnrirelgplfkktvadsnapvQDKALDALIAYLKAADADAGRYAKEVCDAIAAKcltgrpktVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEfgakiippkrILKMLPelfdhqdqnvrasskgLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNvsgtarptrkIRAEQDKELGQElisedvgpgpseestadvppeideyelvdpvdiltpleksgfwegvkatKWSERKDAVAELTKLastkriapgdfTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGlrthfsgssrFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICmeclndgtpevRDAAFSVLAAIAKSvgmrplersiEKLDDVRRNKLSEMiagsggdvatgtssarvqtsggsvpsveasessFVRKSAASmlsgkrpvsaapaskkggpvkpsakkdgsgkqetsklteapedvepsemSLEEIESRLgslipadtvgqLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMlpgwseknVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTfseavgpgfIFERLYKIMKdhknpkvlSEGILWMVSAVEDFGVSHLKLKDLIDFckdtglqssaAATRNATIKLLGALHkfvgpdikgfLADVKPALLSALDaeyeknpfegtvvpkktvrasestssvssggsdglpredisgkftPTLVkslespdwkVRLESIEAVNKILEEANkriqpagtgelfgglrgrlydsnKNLVMATLITLGAVAsamgpaveksskGVLSDILKCLgdnkkhmrECTLTVLDAWLAAVHLDKMVPYVTTAltdaklgaegRKDLFDWLSKqltglsgfpdaahllkpasiamtdkssDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKlngasqvsmgptskssskvpksasngvskhgnraissrviptkgarpesimSVQDFAVQSQALlnvkdsnkedRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDegyslteseaavflpclveksghNIEKVREKMRELTKQIVNFYSATKTLPYILEGlrsknnrtrieCVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEkkkegkpgeARAALRRSVRengsdiaeqsgdvsqsvsgptlmrrnyghselhversimpralasvsgptdwnealdiisfgspeqsvEGMKVVCHELAqatndpegsvmDELVKDADRLVSCLANKVAktfdfsltgassrSCKYVLNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLdervphmddGSQLLKALNVLMLKILDNADRTSSFVVLINLlrpldpsrwpspasnesfAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRragaddkplRMVKTVLHELVKLRGAAikghlsmvpidmkpqpIILAYIDLNLEVVN

mseeekllkeakklpwedrllhknwkvrneanIDLAAlcdsitdpkdNRIRELGPLFkktvadsnapvQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTlelcrwigkdpvkTILFEKMRDTMKKELEVelvnvsgtarptrkiraeQDKELGQelisedvgpgpseestadvppeIDEYELVDPVDILTpleksgfwegvkatkwserKDAVAELTklastkriapgdftEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTsvknkvplvrsltlNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIaksvgmrplersiekldDVRRNKLSEmiagsggdvatgtssarvqtsggsvpsveasessFVRKSAAsmlsgkrpvsaapaskkggpvkpsakkdgsgkqetsklteapedvepseMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLttfseavgpgFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAeyeknpfegtvvpkktvrasestssvssggsdglpredisgKFTPTLvkslespdwkvrLESIEAVNKILeeankriqpagtgelfgGLRGRLYDSNKNLVMATLITLGAVASAMGPaveksskgvLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASiamtdkssDVRKAAEACIVEILraggqetiekNLKDIQGPALALILERIKLNgasqvsmgptskssskvpksasngvskhgnraissrviptkgarPESIMSVQDFAVQSQallnvkdsnkedrermvvrrfkfedprieqIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNfysatktlpyILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLtdaqksmlddrfKWKVRemekkkegkpgearaalRRSVRengsdiaeqsgdvsqsvsgptLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQatndpegsVMDELVKDADRLVSCLANKVaktfdfsltgassrSCKYVLNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQstiydvdldrILQSIHVYLQELGMEEIRRragaddkplrMVKTVLHELVKLRgaaikghlsmvpidmkpqPIILAYIDLNLEVVN

MSeeekllkeakklPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEkaiknkvakavvpaIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFllpvlleklkekkpTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNvqvqqqvieviNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAsestssvssggsdgLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTskssskvpksasNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWKVRemekkkegkpgeARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQEstldslitelllwlldeRVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLEVVN

*************LPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELV**********************************************EYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM**************************************************************************************************************************LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYE**************************************************PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA*******VRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKL*****************************************************************************VRRFKFED*RIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKW**********************************************************************V*GPTDWNEALDIISFGS****VEGMKVVCHELA**********MDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPL*****************NQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLEV**

******LLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT****************************************DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEM****************************************************************************KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVE*****DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV**********************LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQV*************************************************************************RFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDA***********************************************************************************************************************DPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDE******D*SQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDP****************QRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPI**KPQPIILAYIDLNLEV**

********KEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELIS**************VPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS****************************************************************************************EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKK******************LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGAS**************************NRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWKVRE**************************************SGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLEVVN

*****KLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSG**************************************PEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSG**********************************************************************************SEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF*********************GGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKL*******************************************************************SNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWKV********************************************************VERSI*******VSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPSRWP******SFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLEVVN

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLxxxxxxxxxxxxxxxxxxxxxxxxxxxxTKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLEVVN

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1739	2.2.26 [Sep-21-2011]
Q94FN2		1978	Protein MOR1 OS=Arabidops	yes	no	0.994	0.874	0.788	0.0
Q5N749		1997	Protein MOR1 OS=Oryza sat	yes	no	0.991	0.863	0.743	0.0
Q14008		2032	Cytoskeleton-associated p	yes	no	0.800	0.685	0.306	1e-177
A2AGT5		2032	Cytoskeleton-associated p	yes	no	0.806	0.689	0.298	1e-171
Q1ZXQ8		2013	Centrosomal protein 224 O	yes	no	0.559	0.483	0.265	7e-96
O94534		809	Spindle pole body compone	yes	no	0.289	0.621	0.283	8e-47
Q09933		882	Phosphoprotein p93 OS=Sch	no	no	0.268	0.529	0.252	2e-31
P46675		888	Protein STU2 OS=Saccharom	yes	no	0.369	0.724	0.251	1e-29
G5EEM5		1415	Zygote defective protein	yes	no	0.127	0.156	0.288	2e-17
Q2UCC9		1184	Protein stu1 OS=Aspergill	no	no	0.167	0.246	0.226	0.0002

>sp\|Q94FN2\|MOR1_ARATH Protein MOR1 OS=Arabidopsis thaliana GN=MOR1 PE=1 SV=1	Back alignment and function desciption

 Score = 2774 bits (7190), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1376/1744 (78%), Positives = 1540/1744 (88%), Gaps = 14/1744 (0%)

Query: 2    SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
            +E+EKLLKEAKKLPWEDRL HKNWKVRNEAN+DLA++ DSITDPKD R+R+ G LF+KTV
Sbjct: 3    TEDEKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGHLFRKTV 62

Query: 62   ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
            ADSNAPVQ+KALDALIA+L+AAD+DAGRYAKEVCDAIA KCLTGR  TV+KAQA F+LWV
Sbjct: 63   ADSNAPVQEKALDALIAFLRAADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFLLWV 122

Query: 122  ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
            ELEAVDVFLD MEKAIKNKVAKAVVPA+DVMFQALSEFG+K+IPPKRILKMLPELFDHQD
Sbjct: 123  ELEAVDVFLDTMEKAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQD 182

Query: 182  QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
            QNVRAS+KG+TLELCRWIGKDPVK+ILFEKMRDTMKKELE EL NV+  A+PTRKIR+EQ
Sbjct: 183  QNVRASAKGVTLELCRWIGKDPVKSILFEKMRDTMKKELEAELANVTAGAKPTRKIRSEQ 242

Query: 242  DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
            DKE   E  S+ VG GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243  DKEPEAEASSDVVGDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSE 302

Query: 302  RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
            RK+AVAELTKLASTK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS
Sbjct: 303  RKEAVAELTKLASTKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFS 362

Query: 362  GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
             SSRF+LPVLLEKLKEKK +V + LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS
Sbjct: 363  ASSRFMLPVLLEKLKEKKQSVTDPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRS 422

Query: 422  LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
             TL W+TFC+ETS+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPL
Sbjct: 423  STLTWLTFCLETSNKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPL 482

Query: 482  ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
            ERS+EKLDDVR+ KLSEMIAGSGG    GTSS  VQ+S GS  +   S++SFVRKSAASM
Sbjct: 483  ERSLEKLDDVRKKKLSEMIAGSGGGDQAGTSSVTVQSSVGST-ATGNSDASFVRKSAASM 541

Query: 542  LSGKRPVSAAPAS-KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600
            LSGKRP  +A AS K G       KKDGS + E SK  E PEDVEP+EM LEEIE+RLGS
Sbjct: 542  LSGKRPAPSAQASKKVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIENRLGS 601

Query: 601  LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ 660
            L+  +TV QLKS+VWKERLEA  +L++++E +Q LD+SVEILVRL+C +PGW+EKNVQVQ
Sbjct: 602  LVKPETVSQLKSSVWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQ 661

Query: 661  QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
            QQVIE+I Y+++TA KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FE
Sbjct: 662  QQVIEIITYISSTAAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFE 721

Query: 721  RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
            RL+KIMK+HKNPKVLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATI
Sbjct: 722  RLFKIMKEHKNPKVLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATI 781

Query: 781  KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840
            KLLGALHKFVGPDIKGFL DVKPALLSALD EYEKNPFEGT  PK+ V  +  ++S SSG
Sbjct: 782  KLLGALHKFVGPDIKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVV-KTSVSTSTSSG 840

Query: 841  GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900
            G D LPREDIS K TP L+K  ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGL
Sbjct: 841  GLDSLPREDISTKITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGL 900

Query: 901  RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960
            RGRL DSNKNLVM TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL  L
Sbjct: 901  RGRLLDSNKNLVMQTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAAL 960

Query: 961  DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1020
            D WL AVHLDKM+PY+  ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS A
Sbjct: 961  DLWLGAVHLDKMIPYIIIALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTA 1020

Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQ 1074
            MTDKS+DVRKAAE CI EILR  GQE IEKNLKDIQGPALAL+LE+++         +S+
Sbjct: 1021 MTDKSADVRKAAEGCISEILRVSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSK 1080

Query: 1075 VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134
               GP SK  +K+ KS SNG  K GNR   SR +PTKG+    I SV D A+QSQALLN 
Sbjct: 1081 AMAGPVSKGVTKISKSTSNGTLKQGNR---SRAVPTKGS--SQITSVHDIAIQSQALLNT 1135

Query: 1135 KDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEML 1194
            KDSNKEDRER+VVRR KFE+ R EQIQ+LENDMMK+FREDL +RLLS DFKKQVDGLE+L
Sbjct: 1136 KDSNKEDRERVVVRRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEIL 1195

Query: 1195 QKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 1254
            QKALPS+ K+IIEVLD+LLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EA
Sbjct: 1196 QKALPSVSKEIIEVLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEA 1255

Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDL 1314
            A+FLPCL EK GHNIEKVREKMREL KQI+  YS  KT PYILEGLRSKNNRTRIEC DL
Sbjct: 1256 AIFLPCLAEKLGHNIEKVREKMRELMKQIIQAYSVGKTYPYILEGLRSKNNRTRIECTDL 1315

Query: 1315 VGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
            +G+L++  G EI G LK L IVASLTAERDGE+RKAALNT+ATGY+ILG DIW+YVGKLT
Sbjct: 1316 IGYLLETCGTEIGGLLKYLNIVASLTAERDGELRKAALNTMATGYQILGADIWKYVGKLT 1375

Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
            DAQKSM+DDRFKWK ++MEK++EGKPGEARAALRRSVR++G ++AEQSGD+SQ+V GP  
Sbjct: 1376 DAQKSMIDDRFKWKAKDMEKRREGKPGEARAALRRSVRDSGPEVAEQSGDISQTVPGPLF 1435

Query: 1435 MRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQAT 1494
             R++YG SE  +ER+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+
Sbjct: 1436 PRQSYGISEQMLERTPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQAS 1495

Query: 1495 NDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAY 1554
            NDPE S +DELVKDAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+
Sbjct: 1496 NDPEESAIDELVKDADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAH 1555

Query: 1555 AVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLL 1614
            AV+E TL+SLITELLLWLLDERVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LL
Sbjct: 1556 AVKEGTLESLITELLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLL 1615

Query: 1615 RPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQ 1674
            RPLDPSRWPSPA+ E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ
Sbjct: 1616 RPLDPSRWPSPATAEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQ 1675

Query: 1675 ELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLN 1734
            +LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLN
Sbjct: 1676 DLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLN 1735

Query: 1735 LEVV 1738
            LE +
Sbjct: 1736 LETL 1739

Microtubule-binding protein that is essential for cortical microtubules organization and function. Essential for maintaining the interphase cortical array and for correct morphogenesis. Promotes rapid growth and shrinkage of microtubules and suppresses the pausing of interphase microtubules. Regulates the structure and function of microtubule arrays during mitosis and cytokinesis. Probably not required for cellulose microfibrils alignment in roots.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q5N749\|MOR1_ORYSJ Protein MOR1 OS=Oryza sativa subsp. japonica GN=MOR1 PE=2 SV=1	Back alignment and function description

>sp\|Q14008\|CKAP5_HUMAN Cytoskeleton-associated protein 5 OS=Homo sapiens GN=CKAP5 PE=1 SV=3	Back alignment and function description

>sp\|A2AGT5\|CKAP5_MOUSE Cytoskeleton-associated protein 5 OS=Mus musculus GN=Ckap5 PE=2 SV=1	Back alignment and function description

>sp\|Q1ZXQ8\|MTAA_DICDI Centrosomal protein 224 OS=Dictyostelium discoideum GN=mtaA PE=1 SV=1	Back alignment and function description

>sp\|O94534\|ALP14_SCHPO Spindle pole body component alp14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp14 PE=1 SV=1	Back alignment and function description

>sp\|Q09933\|DIS1_SCHPO Phosphoprotein p93 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dis1 PE=1 SV=1	Back alignment and function description

>sp\|P46675\|STU2_YEAST Protein STU2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STU2 PE=1 SV=1	Back alignment and function description

>sp\|G5EEM5\|ZYG9_CAEEL Zygote defective protein 9 OS=Caenorhabditis elegans GN=zyg-9 PE=1 SV=1	Back alignment and function description

>sp\|Q2UCC9\|STU1_ASPOR Protein stu1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=stu1 PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1739
224115548		2025	microtubule organization protein [Populu	0.999	0.858	0.849	0.0
224061471		2036	microtubule organization protein [Populu	0.999	0.853	0.850	0.0
255587410		1992	microtubule associated protein xmap215,	0.979	0.854	0.847	0.0
356533943		2035	PREDICTED: protein MOR1-like [Glycine ma	0.997	0.852	0.827	0.0
356574625		2035	PREDICTED: protein MOR1-like [Glycine ma	0.997	0.852	0.827	0.0
19912731		2029	microtubule bundling polypeptide TMBP200	0.998	0.855	0.797	0.0
297823359		1980	hypothetical protein ARALYDRAFT_482523 [	0.994	0.873	0.795	0.0
449434204		2005	PREDICTED: protein MOR1-like [Cucumis sa	0.986	0.855	0.792	0.0
30686489		1978	microtubule organization 1 protein [Arab	0.994	0.874	0.788	0.0
115440677		1997	Os01g0816400 [Oryza sativa Japonica Grou	0.991	0.863	0.743	0.0

>gi\|224115548\|ref\|XP_002317062.1\| microtubule organization protein [Populus trichocarpa] gi\|222860127\|gb\|EEE97674.1\| microtubule organization protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 3028 bits (7850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1488/1751 (84%), Positives = 1609/1751 (91%), Gaps = 13/1751 (0%)

Query: 1    MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
            MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLA+LC SI DPKD+R+RE  PLF+KT
Sbjct: 1    MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLASLCVSIFDPKDSRLREFAPLFRKT 60

Query: 61   VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
            VADSNAPVQ+KALDALIA+L+AADADAGRYAKEVCDAI AKCLTGRPKTVEKAQA FMLW
Sbjct: 61   VADSNAPVQEKALDALIAFLRAADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQAAFMLW 120

Query: 121  VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
            VELEAV+ FLD MEKAIKNKV+KAVVPAIDVMFQALSEFGAK++PPKRILKMLPELFDHQ
Sbjct: 121  VELEAVEAFLDAMEKAIKNKVSKAVVPAIDVMFQALSEFGAKVVPPKRILKMLPELFDHQ 180

Query: 181  DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
            DQNVRASSKGLTLELCRWIGKDPVK+IL EKMRDTMKKELE ELVNV+GTA+P+RKIR+E
Sbjct: 181  DQNVRASSKGLTLELCRWIGKDPVKSILLEKMRDTMKKELEAELVNVTGTAKPSRKIRSE 240

Query: 241  QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
            QDKE   E +SE  GPG SEE   D P EIDEY+L+DPVDIL+PLEKSGFW+GVKATKWS
Sbjct: 241  QDKEPEPEGVSEVAGPGQSEEVAPDAPQEIDEYDLMDPVDILSPLEKSGFWDGVKATKWS 300

Query: 301  ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
            ERK+AVAELTKLASTKRIAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR+HF
Sbjct: 301  ERKEAVAELTKLASTKRIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRSHF 360

Query: 361  SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV--VEDVKTSVKNKVPL 418
            SGSSRFLLPVLLEKLKEKKPT+ ESLTQTLQAMHKAGC NL D+  VE VKT+VKNKVPL
Sbjct: 361  SGSSRFLLPVLLEKLKEKKPTLTESLTQTLQAMHKAGCSNLADIFAVEYVKTAVKNKVPL 420

Query: 419  VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478
            VRSLTLNWVTFCIETS+KA +LKVHKDYVPICME LNDGTP+VRD+AFSVLAA+AK VGM
Sbjct: 421  VRSLTLNWVTFCIETSNKAVILKVHKDYVPICMESLNDGTPDVRDSAFSVLAAVAKMVGM 480

Query: 479  RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSA 538
            RPLERS+EKLDDVRR KLSEMIAGSG  VA   +S  VQT+ GS+ SVE SESSFV+KSA
Sbjct: 481  RPLERSLEKLDDVRRKKLSEMIAGSGDGVAAVATSGTVQTARGSMSSVETSESSFVKKSA 540

Query: 539  ASMLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIES 596
            ASMLSGK+P  AAPA+KK  P K  A K  DG+G+ ETS+  E PEDVEP+EMSLEEIE+
Sbjct: 541  ASMLSGKKPAPAAPANKKAAPTKSGASKKVDGAGRPETSRALEPPEDVEPAEMSLEEIET 600

Query: 597  RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKN 656
            RLGSLI ADT+ QLKSAVWKERLEAISSL++QVE +QN +QSVEIL+RL+C +PGW+EKN
Sbjct: 601  RLGSLIQADTISQLKSAVWKERLEAISSLKEQVEGLQNCNQSVEILIRLLCAIPGWNEKN 660

Query: 657  VQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPG 716
            VQVQQQ IEVI YLA+TA+KFPKKCVVLCLLGISERVADIKTRA+AMKCLTTF+EAVGPG
Sbjct: 661  VQVQQQFIEVITYLASTASKFPKKCVVLCLLGISERVADIKTRAYAMKCLTTFTEAVGPG 720

Query: 717  FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATR 776
            F+F+RLYKIMK+HKNPKVLSEGILWMV A++DFGVSHLKLKDLIDFCKDTGLQSS AA+R
Sbjct: 721  FVFDRLYKIMKEHKNPKVLSEGILWMVLAIDDFGVSHLKLKDLIDFCKDTGLQSSVAASR 780

Query: 777  NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTS 835
            NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG + +PKKTVR SES +
Sbjct: 781  NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGASAIPKKTVRTSESMT 840

Query: 836  SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 895
             VS GG D LPREDISGK TPTL+KSLESPDWKVRLESIEAVNKILEEANKRIQP GTGE
Sbjct: 841  CVSGGGLDSLPREDISGKVTPTLIKSLESPDWKVRLESIEAVNKILEEANKRIQPNGTGE 900

Query: 896  LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955
            LFG LRGRLYDSNKNL+M  L T+G VASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC
Sbjct: 901  LFGALRGRLYDSNKNLIMTALTTIGGVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 960

Query: 956  TLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015
             L  LD+W+AAVHLDKM+PY+T AL ++KLGAEGRKDLFDWLSKQL+GLS FPDA HLLK
Sbjct: 961  ALNTLDSWVAAVHLDKMIPYITAALFESKLGAEGRKDLFDWLSKQLSGLSEFPDAIHLLK 1020

Query: 1016 PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ- 1074
            PA  AMTDKS+DVRKAAEACI EILR  GQE IE+NLKDI GPALAL+LER++     Q 
Sbjct: 1021 PAGSAMTDKSADVRKAAEACISEILRVCGQEMIERNLKDIHGPALALVLERVRPASVYQE 1080

Query: 1075 -------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
                   +SMGP+SK+SSKV K+ASNG+SKH NR+ISSRVIPTKG++PE  MS+QD AVQ
Sbjct: 1081 SFESTKTISMGPSSKTSSKVGKAASNGISKHSNRSISSRVIPTKGSKPEPAMSIQDRAVQ 1140

Query: 1128 SQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQ 1187
            SQALLNVKDSNKEDRERMVVRRFKFE+PR+EQIQ+LE DMMKY REDL+RRLLS DFKKQ
Sbjct: 1141 SQALLNVKDSNKEDRERMVVRRFKFEEPRMEQIQDLEGDMMKYLREDLNRRLLSLDFKKQ 1200

Query: 1188 VDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGY 1247
            VDGLEMLQKALPSI  +IIEVLDILL+WFVLQFCKSNTTCLLKVLEFLP LFD LRDE Y
Sbjct: 1201 VDGLEMLQKALPSIGNEIIEVLDILLKWFVLQFCKSNTTCLLKVLEFLPALFDLLRDEAY 1260

Query: 1248 SLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRT 1307
            +L+ESEAA+FLPCL+EK GHNIEKVREKMREL KQI++ YSATK+ PYILEGLRSKNNRT
Sbjct: 1261 TLSESEAAIFLPCLIEKLGHNIEKVREKMRELAKQILHAYSATKSFPYILEGLRSKNNRT 1320

Query: 1308 RIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIW 1367
            RIEC DLVGFLID HGAEISGQLKSLQIVASLTAERDGEIRKAALN LATGYKILGEDIW
Sbjct: 1321 RIECADLVGFLIDQHGAEISGQLKSLQIVASLTAERDGEIRKAALNALATGYKILGEDIW 1380

Query: 1368 RYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQ 1427
            RY+GKLTDAQKSM+DDRFKWKVREMEK+KEG+PG+ARAALRRSVRENGSDIAEQSG+VSQ
Sbjct: 1381 RYLGKLTDAQKSMIDDRFKWKVREMEKRKEGRPGDARAALRRSVRENGSDIAEQSGEVSQ 1440

Query: 1428 SVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVC 1487
            SVSGP L R+N+G  EL VER IMPRAL S SGPTDWNEALDIISF SPEQSVEGMKVVC
Sbjct: 1441 SVSGPILARKNFGTQELQVERHIMPRALTSASGPTDWNEALDIISFSSPEQSVEGMKVVC 1500

Query: 1488 HELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTF 1547
            HELAQAT+D EGSVMDELVKDADRLVSCLANKVA+TFDFSLTGASSRSCKYVLNTLMQTF
Sbjct: 1501 HELAQATSDEEGSVMDELVKDADRLVSCLANKVARTFDFSLTGASSRSCKYVLNTLMQTF 1560

Query: 1548 QNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF 1607
            QNK LA+AV+ESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF
Sbjct: 1561 QNKTLAHAVKESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF 1620

Query: 1608 VVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQ 1667
             VLINLLRPLDPSRWPSPAS E+FA RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRIL+
Sbjct: 1621 DVLINLLRPLDPSRWPSPASTETFAIRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILR 1680

Query: 1668 SIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPII 1727
            SIH+YLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGA+IKGHLSMVPIDMKPQPII
Sbjct: 1681 SIHIYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGASIKGHLSMVPIDMKPQPII 1740

Query: 1728 LAYIDLNLEVV 1738
            LAYIDLNLE +
Sbjct: 1741 LAYIDLNLETL 1751

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224061471\|ref\|XP_002300496.1\| microtubule organization protein [Populus trichocarpa] gi\|222847754\|gb\|EEE85301.1\| microtubule organization protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255587410\|ref\|XP_002534264.1\| microtubule associated protein xmap215, putative [Ricinus communis] gi\|223525620\|gb\|EEF28119.1\| microtubule associated protein xmap215, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356533943\|ref\|XP_003535517.1\| PREDICTED: protein MOR1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356574625\|ref\|XP_003555446.1\| PREDICTED: protein MOR1-like [Glycine max]	Back alignment and taxonomy information

>gi\|19912731\|dbj\|BAB88648.1\| microtubule bundling polypeptide TMBP200 [Nicotiana tabacum]	Back alignment and taxonomy information

>gi\|297823359\|ref\|XP_002879562.1\| hypothetical protein ARALYDRAFT_482523 [Arabidopsis lyrata subsp. lyrata] gi\|297325401\|gb\|EFH55821.1\| hypothetical protein ARALYDRAFT_482523 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|449434204\|ref\|XP_004134886.1\| PREDICTED: protein MOR1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi|30686489|ref|NP_565811.2| microtubule organization 1 protein [Arabidopsis thaliana] gi|75250086|sp|Q94FN2.1|MOR1_ARATH RecName: Full=Protein MOR1; AltName: Full=Protein GEM1; AltName: Full=Protein GEMINI POLLEN 1; AltName: Full=Protein MICROTUBULE ORGANIZATION 1; AltName: Full=Protein RID5; AltName: Full=Protein ROOT INITIATION DEFECTIVE 5 gi|14317953|gb|AAK59871.1|AF367246_1 microtubule organization 1 protein [Arabidopsis thaliana] gi|22252950|gb|AAM94170.1| MOR1/GEM1 [Arabidopsis thaliana] gi|330254039|gb|AEC09133.1| microtubule organization 1 protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi|115440677|ref|NP_001044618.1| Os01g0816400 [Oryza sativa Japonica Group] gi|75251094|sp|Q5N749.1|MOR1_ORYSJ RecName: Full=Protein MOR1; AltName: Full=Protein GEM1; AltName: Full=Protein MICROTUBULE ORGANIZATION 1 gi|56785068|dbj|BAD82707.1| putative microtubule bundling polypeptide TMBP200 [Oryza sativa Japonica Group] gi|56785322|dbj|BAD82281.1| putative microtubule bundling polypeptide TMBP200 [Oryza sativa Japonica Group] gi|113534149|dbj|BAF06532.1| Os01g0816400 [Oryza sativa Japonica Group] gi|222619446|gb|EEE55578.1| hypothetical protein OsJ_03864 [Oryza sativa Japonica Group]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1739
TAIR\|locus:2058739		1978	MOR1 "MICROTUBULE ORGANIZATION	0.987	0.868	0.748	0.0
UNIPROTKB\|E1B7K5		2032	CKAP5 "Uncharacterized protein	0.598	0.511	0.294	1e-170
UNIPROTKB\|E2RSW0		2033	CKAP5 "Uncharacterized protein	0.641	0.548	0.285	5.5e-170
UNIPROTKB\|Q14008		2032	CKAP5 "Cytoskeleton-associated	0.641	0.548	0.285	1.4e-168
UNIPROTKB\|F1P0Y0		2036	CKAP5 "Uncharacterized protein	0.598	0.510	0.294	4.8e-167
MGI\|MGI:1923036		2032	Ckap5 "cytoskeleton associated	0.600	0.513	0.288	1.9e-165
ZFIN\|ZDB-GENE-051120-174		2033	ckap5 "cytoskeleton associated	0.576	0.492	0.295	3.1e-159
UNIPROTKB\|F1M949		1778	Ckap5 "Protein Ckap5" [Rattus	0.460	0.449	0.292	5.1e-139
DICTYBASE\|DDB_G0268616		2013	cepJ "centrosomal protein 224	0.309	0.267	0.271	2.4e-117
UNIPROTKB\|F1SIB5		1517	F1SIB5 "Uncharacterized protei	0.292	0.335	0.313	2.8e-109

TAIR\|locus:2058739 MOR1 "MICROTUBULE ORGANIZATION 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 6592 (2325.6 bits), Expect = 0., P = 0.
 Identities = 1296/1731 (74%), Positives = 1448/1731 (83%)

Query:    15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
             PWEDRL HKNWKVRNEAN+DLA++ DSITDPKD R+R+ G LF+KTVADSNAPVQ+KALD
Sbjct:    16 PWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGHLFRKTVADSNAPVQEKALD 75

Query:    75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVME 134
             ALIA+L+AAD+DAGRYAKEVCDAIA KCLTGR  TV+KAQA F+LWVELEAVDVFLD ME
Sbjct:    76 ALIAFLRAADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFLLWVELEAVDVFLDTME 135

Query:   135 XXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLE 194
                           +DVMFQALSEFG+K+IPPKRILKMLPELFDHQDQNVRAS+KG+TLE
Sbjct:   136 KAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQDQNVRASAKGVTLE 195

Query:   195 LCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDV 254
             LCRWIGKDPVK+ILFEKMRDTMKKELE EL NV+  A+PTRKIR+EQDKE   E  S+ V
Sbjct:   196 LCRWIGKDPVKSILFEKMRDTMKKELEAELANVTAGAKPTRKIRSEQDKEPEAEASSDVV 255

Query:   255 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS 314
             G GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSERK+AVAELTKLAS
Sbjct:   256 GDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSERKEAVAELTKLAS 315

Query:   315 TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXXXXX 374
             TK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS SSRF        
Sbjct:   316 TKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFSASSRFMLPVLLEK 375

Query:   375 XXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434
                   +V + LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS TL W+TFC+ETS
Sbjct:   376 LKEKKQSVTDPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRSSTLTWLTFCLETS 435

Query:   435 SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRN 494
             +KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPLERS+EKLDDVR+ 
Sbjct:   436 NKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPLERSLEKLDDVRKK 495

Query:   495 KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPAS 554
             KLSEMIAGSGG    GTSS  VQ+S GS  +   S++SFVRKSAASMLSGKRP  +A AS
Sbjct:   496 KLSEMIAGSGGGDQAGTSSVTVQSSVGSTATGN-SDASFVRKSAASMLSGKRPAPSAQAS 554

Query:   555 KKGGPVKPSA-KKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSA 613
             KK G  KP   KKDGS + E SK  E PEDVEP+EM LEEIE+RLGSL+  +TV QLKS+
Sbjct:   555 KKVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIENRLGSLVKPETVSQLKSS 614

Query:   614 VWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAAT 673
             VWKERLEA  +L++++E +Q LD+SVEILVRL+C +PGW+EKN            Y+++T
Sbjct:   615 VWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQQQVIEIITYISST 674

Query:   674 ATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPK 733
             A KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FERL+KIMK+HKNPK
Sbjct:   675 AAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFERLFKIMKEHKNPK 734

Query:   734 VLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD 793
             VLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATIKLLGALHKFVGPD
Sbjct:   735 VLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATIKLLGALHKFVGPD 794

Query:   794 IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXXXXXXLPREDISGK 853
             IKGFL DVKPALLSALD EYEKNPFEGT  PK+ V+               LPREDIS K
Sbjct:   795 IKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVVKTSVSTSTSSGGLDS-LPREDISTK 853

Query:   854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 913
              TP L+K  ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGLRGRL DSNKNLVM
Sbjct:   854 ITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGLRGRLLDSNKNLVM 913

Query:   914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMV 973
              TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL  LD WL AVHLDKM+
Sbjct:   914 QTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAALDLWLGAVHLDKMI 973

Query:   974 PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAE 1033
             PY+  ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS AMTDKS+DVRKAAE
Sbjct:   974 PYIIIALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTAMTDKSADVRKAAE 1033

Query:  1034 ACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQVSMGPTXXXXXXX 1087
              CI EILR  GQE IEKNLKDIQGPALAL+LE+++         +S+   GP        
Sbjct:  1034 GCISEILRVSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSKAMAGPVSKGVTKI 1093

Query:  1088 XXXXXNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVV 1147
                  NG  K GNR   SR +PTKG+    I SV D A+QSQALLN KDSNKEDRER+VV
Sbjct:  1094 SKSTSNGTLKQGNR---SRAVPTKGS--SQITSVHDIAIQSQALLNTKDSNKEDRERVVV 1148

Query:  1148 RRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIE 1207
             RR KFE+ R EQIQ+LENDMMK+FREDL +RLLS DFKKQVDGLE+LQKALPS+ K+IIE
Sbjct:  1149 RRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEILQKALPSVSKEIIE 1208

Query:  1208 VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 1267
             VLD+LLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EAA+FLPCL EK GH
Sbjct:  1209 VLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEAAIFLPCLAEKLGH 1268

Query:  1268 NIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEIS 1327
             NIEKVREKMREL KQI+  YS  KT PYILEGLRSKNNRTRIEC DL+G+L++  G EI 
Sbjct:  1269 NIEKVREKMRELMKQIIQAYSVGKTYPYILEGLRSKNNRTRIECTDLIGYLLETCGTEIG 1328

Query:  1328 GQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKW 1387
             G LK L IVASLTAERDGE+RKAALNT+ATGY+ILG DIW+YVGKLTDAQKSM+DDRFKW
Sbjct:  1329 GLLKYLNIVASLTAERDGELRKAALNTMATGYQILGADIWKYVGKLTDAQKSMIDDRFKW 1388

Query:  1388 KVRXXXXXXXXXXXXARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNYGHSELHVE 1447
             K +            ARAALRRSVR++G ++AEQSGD+SQ+V GP   R++YG SE  +E
Sbjct:  1389 KAKDMEKRREGKPGEARAALRRSVRDSGPEVAEQSGDISQTVPGPLFPRQSYGISEQMLE 1448

Query:  1448 RSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDELVK 1507
             R+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+NDPE S +DELVK
Sbjct:  1449 RTPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQASNDPEESAIDELVK 1508

Query:  1508 DADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQXXXXXXXXXX 1567
             DAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+AV+          
Sbjct:  1509 DADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAHAVKEGTLESLITE 1568

Query:  1568 XXXXXXXERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPSRWPSPAS 1627
                    ERVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LLRPLDPSRWPSPA+
Sbjct:  1569 LLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLLRPLDPSRWPSPAT 1628

Query:  1628 NESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGA 1687
              E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ+LGMEEIRRRAGA
Sbjct:  1629 AEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQDLGMEEIRRRAGA 1688

Query:  1688 DDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLEVV 1738
             DDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLNLE +
Sbjct:  1689 DDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLNLETL 1739

GO:0005634 "nucleus" evidence=ISM

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA;IMP

GO:0000910 "cytokinesis" evidence=RCA;IMP

GO:0005819 "spindle" evidence=IDA

GO:0005874 "microtubule" evidence=IDA

GO:0008017 "microtubule binding" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0009574 "preprophase band" evidence=IDA

GO:0030981 "cortical microtubule cytoskeleton" evidence=IDA

GO:0009920 "cell plate formation involved in plant-type cell wall biogenesis" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0007017 "microtubule-based process" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

UNIPROTKB\|E1B7K5 CKAP5 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RSW0 CKAP5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q14008 CKAP5 "Cytoskeleton-associated protein 5" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P0Y0 CKAP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1923036 Ckap5 "cytoskeleton associated protein 5" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-051120-174 ckap5 "cytoskeleton associated protein 5" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1M949 Ckap5 "Protein Ckap5" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0268616 cepJ "centrosomal protein 224 kDa" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SIB5 F1SIB5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94FN2	MOR1_ARATH	No assigned EC number	0.7889	0.9948	0.8746	yes	no
Q5N749	MOR1_ORYSJ	No assigned EC number	0.7434	0.9913	0.8632	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	MOR1	microtubule organization protein (2025 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1739
pfam12348		228	pfam12348, CLASP_N, CLASP N terminal	0.001
pfam02985		31	pfam02985, HEAT, HEAT repeat	0.004

>gnl\|CDD\|221541 pfam12348, CLASP_N, CLASP N terminal	Back alignment and domain information

 Score = 41.8 bits (99), Expect = 0.001
 Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 30/187 (16%)

Query: 299 WSERKDAVAELTKL----ASTKRIAPGDFTEVCRTLK----KLITDVNIAVAVEAIQAIG 350
           W  R+ A+ +L  +    A      P +F    + L     K ++ +   ++      + 
Sbjct: 21  WDAREKAIIKLRSIIKGNAPED--YPSEFLAGLKQLLEGILKALSSLRTTLSSTGCHLLK 78

Query: 351 NLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKT 410
            LA  L  H    +  LLP LL+   + K  ++++  Q +  +        V     ++ 
Sbjct: 79  ELAIQLGHHLDPFAEILLPTLLKLCGDTKKIISQNANQAVADILSN-----VSYTPRLEL 133

Query: 411 SV-------KNKVPLVRSLTLNW-----VTFCIETSSKAAVLKVHKDYVPICMECLNDGT 458
                    KN  P  R  +  W     +      S       +   Y     + L D  
Sbjct: 134 QHISAALQDKNVQP--REYSAIWLKILLIRHGHHKSHIEHHGGL-DLYEKSLKKGLEDAN 190

Query: 459 PEVRDAA 465
           P VR+ A
Sbjct: 191 PGVRETA 197

This region is found at the N terminal of CLIP-associated proteins (CLASPs). CLASPs are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules. In yeast, Drosophila, and Xenopus, a single CLASP orthologue is present. In mammals, a second paralogue (CLASP2) exists which has some functional overlap with CLASP1. Length = 228

>gnl\|CDD\|202500 pfam02985, HEAT, HEAT repeat	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1739
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	100.0
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	100.0
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.85
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.7
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.45
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.44
KOG1824		1233	consensus TATA-binding protein-interacting protein	99.33
KOG2956		516	consensus CLIP-associating protein [General functi	99.03
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	98.93
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	98.83
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	98.76
KOG1824		1233	consensus TATA-binding protein-interacting protein	98.68
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	98.66
KOG1242		569	consensus Protein containing adaptin N-terminal re	98.64
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.52
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.42
KOG0212		675	consensus Uncharacterized conserved protein [Funct	98.38
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	98.37
KOG1242		569	consensus Protein containing adaptin N-terminal re	98.28
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	98.27
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	98.21
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.07
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.03
PTZ00429		746	beta-adaptin; Provisional	97.96
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	97.93
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.92
KOG0212		675	consensus Uncharacterized conserved protein [Funct	97.85
PRK09687		280	putative lyase; Provisional	97.81
KOG2933		334	consensus Uncharacterized conserved protein [Funct	97.8
KOG2956		516	consensus CLIP-associating protein [General functi	97.79
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.7
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.65
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	97.56
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	97.48
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.45
PRK09687		280	putative lyase; Provisional	97.39
PTZ00429		746	beta-adaptin; Provisional	97.35
PF05004		309	IFRD: Interferon-related developmental regulator (	97.14
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.86
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.75
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	96.44
KOG2933		334	consensus Uncharacterized conserved protein [Funct	96.34
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.31
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	96.26
PF00790		140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	95.97
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	95.93
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.89
cd03568		144	VHS_STAM VHS domain family, STAM subfamily; member	95.84
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	95.72
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	95.71
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	95.68
KOG4535		728	consensus HEAT and armadillo repeat-containing pro	95.67
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	95.67
smart00288		133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	95.63
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	95.62
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	95.57
COG1413		335	FOG: HEAT repeat [Energy production and conversion	95.42
cd03561		133	VHS VHS domain family; The VHS domain is present i	95.35
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	95.32
cd03569		142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	95.25
KOG2032		533	consensus Uncharacterized conserved protein [Funct	94.77
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	94.76
KOG2032		533	consensus Uncharacterized conserved protein [Funct	94.74
cd03565		141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	94.62
cd03567		139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	94.52
PF05004		309	IFRD: Interferon-related developmental regulator (	94.48
PF04118		307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	94.45
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	94.32
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	94.27
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	93.4
KOG2259		823	consensus Uncharacterized conserved protein [Funct	93.11
KOG1087		470	consensus Cytosolic sorting protein GGA2/TOM1 [Int	92.46
cd00197		115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	92.25
TIGR02270		410	conserved hypothetical protein. Members are found	92.18
PF13251		182	DUF4042: Domain of unknown function (DUF4042)	92.07
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	91.54
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	91.52
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	91.29
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	91.2
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	90.87
PF10274		183	ParcG: Parkin co-regulated protein; InterPro: IPR0	90.71
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	90.19
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	89.01
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	88.99
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	88.9
cd00197		115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	88.73
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	88.38
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	88.32
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	87.91
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	86.65
cd03568		144	VHS_STAM VHS domain family, STAM subfamily; member	86.63
COG5096		757	Vesicle coat complex, various subunits [Intracellu	86.5
COG1413		335	FOG: HEAT repeat [Energy production and conversion	86.36
TIGR02270		410	conserved hypothetical protein. Members are found	86.26
PF12231		372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	85.58
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	85.54
KOG1087		470	consensus Cytosolic sorting protein GGA2/TOM1 [Int	84.87
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	84.78
PF00790		140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	84.57
KOG2199		462	consensus Signal transducing adaptor protein STAM/	84.44
cd03567		139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	84.23
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	84.11
smart00288		133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	83.59
PF12074		339	DUF3554: Domain of unknown function (DUF3554); Int	83.54
KOG4524		1014	consensus Uncharacterized conserved protein [Funct	82.79
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	82.61
cd03569		142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	82.19
cd03561		133	VHS VHS domain family; The VHS domain is present i	82.0
KOG2259		823	consensus Uncharacterized conserved protein [Funct	81.92
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	81.91
PF04118		307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	81.77
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	80.73
PF13251		182	DUF4042: Domain of unknown function (DUF4042)	80.27

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

Probab=100.00  E-value=4.5e-70  Score=693.70  Aligned_cols=770  Identities=26%  Similarity=0.301  Sum_probs=650.0

Q ss_pred             cHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh-cCCCccchHHHHHHHHHHHHHHHHhcCCCCccc
Q 000275          603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCM-LPGWSEKNVQVQQQVIEVINYLAATATKFPKKC  681 (1739)
Q Consensus       603 ~~~i~~~L~~~~WK~Rl~a~e~l~~~v~~~~~~~~~~~~Lvr~l~~-~PgwkesNfqV~~~~leil~~la~~~~~fs~~~  681 (1739)
                      +.+....+.++.||.|++++..+..+.+..+..+..++.+++.... .++|++.||||+.-.+.++..-..+... +...
T Consensus         7 ~~~~~~~l~~~~w~~~~~~~~ql~~~~~~~~~~~a~a~~~~~~~s~~~~l~~a~~~~l~~~~~~~l~~~~~~~~~-~~~~   85 (815)
T KOG1820|consen    7 SVGTDSELCSQSWKNRLEAWKQLLTDSNVGAQEQAAALRLLRDASAISALLNAKNIQLLSFGLKCLDSKRVNIRD-TKTQ   85 (815)
T ss_pred             ccccchhhhhhhhhhhHHHHHHHhhhcchhhhHhHHHHHHHHHhhcchhhhhccceeeccchhhhcccccccccC-cchh
Confidence            4455555889999999999999999998876666666777776643 4789999999999998888843221111 2222


Q ss_pred             hhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHH
Q 000275          682 VVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID  761 (1739)
Q Consensus       682 ~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~~i~eFG~~~l~~K~li~  761 (1739)
                      +-.++    .|+.|.+-...+..+++.+++.....+++..+++.+.++++|++..+++.|+...+.+||+.....+.+++
T Consensus        86 ~~~~i----~~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l~D~nvr~~~~~l~v~  161 (815)
T KOG1820|consen   86 SLLRI----GKLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSLADKNVRSEASKLLVE  161 (815)
T ss_pred             HHHHH----HHhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCccccccccchhhcccchh
Confidence            22333    89999999999999999999999999999999999999999999999999999999999999888889999


Q ss_pred             HHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCC
Q 000275          762 FCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGG  841 (1739)
Q Consensus       762 ~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~  841 (1739)
                      +.+-.|.++.+...|.++..+++++..|.|.....|+.+.+|...++...|++++.++....|.|+.+...+....+...
T Consensus       162 i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~  241 (815)
T KOG1820|consen  162 IYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDN  241 (815)
T ss_pred             hhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccccccccccccCCCCCCccc
Confidence            98888999999999999999999999999999999999999999999999999999988888998887665544333445


Q ss_pred             CCCCCcccccccCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHH
Q 000275          842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGA  921 (1739)
Q Consensus       842 ~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~  921 (1739)
                      -|++||+||+++||+.|.++|.|++||+|+||||.+.++|+++++.++.+.+|++...++.|++|+|.|++++|++||+.
T Consensus       242 ~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~  321 (815)
T KOG1820|consen  242 FDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILEL  321 (815)
T ss_pred             cccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999875579999889999999999999999999999999999


Q ss_pred             HHHhcChhhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHHhcccCCcchHHHHHHHHHHHh
Q 000275          922 VASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQL 1001 (1739)
Q Consensus       922 lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wl~~~l 1001 (1739)
                      ||.+||..|.+|++..+|.++.+|+|+|+.+|++++.|+|+|+++++++.+.++|.++|+++  ||+.|.+++.|+.+++
T Consensus       322 ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~k--np~~k~~~~~~l~r~~  399 (815)
T KOG1820|consen  322 IAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGK--NPQIKGECLLLLDRKL  399 (815)
T ss_pred             HHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999965  7999999999999999


Q ss_pred             ccCCC---Cc-chhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCCC---
Q 000275         1002 TGLSG---FP-DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074 (1739)
Q Consensus      1002 ~~~~~---~~-~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~~--- 1074 (1739)
                      ..+..   .. ....+++.++.+.+|++.|||++|.++++++|+++|++.+.+.+.++++.   .+....++.++..   
T Consensus       400 ~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~---~~~~~~E~~~p~~~~~  476 (815)
T KOG1820|consen  400 RKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQ---DIKPKEEKLKPLLHFL  476 (815)
T ss_pred             hhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccc---hhhhhhhhcccccccc
Confidence            99873   22 34555555888999999999999999999999999999999999999987   3444455555532   


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChHHHH----hh
Q 000275         1075 VSMGPTSKSSSKVPKSASNGVSKH-----GNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRE----RM 1145 (1739)
Q Consensus      1075 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~----~~ 1145 (1739)
                      ..+.+++++..+.....+...+..     ....++++..|.+.+...+. ...+ ..++.+..  .+..+++|.    ++
T Consensus       477 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~~~-~~~~-~~~~~~~~--~~~~~~~~~~~~~~r  552 (815)
T KOG1820|consen  477 AAPKEKSSAPDPQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSANSS-RKIP-EAAEAPKL--QLSLKEQRVVLGTRR  552 (815)
T ss_pred             ccCCCcCCCCCccccccceecccccccCCCCCCCccccCCCcccccccc-cCCc-chhhcccc--ccccccchhhhhhhh
Confidence            222223332222111111110000     00001111112221111100 0000 11112212  456788886    56


Q ss_pred             hhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHhHHHHHHHHHHhccCcch
Q 000275         1146 VVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNT 1225 (1739)
Q Consensus      1146 ~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~~lDlllkw~tlr~~dtN~ 1225 (1739)
                      .+.+|++..|..+..+.    |...+...+...|||.||+.|.++++.++.....+.++..++.|++++|+++||+++|+
T Consensus       553 ~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~lr~~~~~~  628 (815)
T KOG1820|consen  553 KVSPKTVVAPVDDKKEP----SKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSIQDLLLEWLVLRFEETNE  628 (815)
T ss_pred             ccCccccccchhhhhcc----cccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchHHhhhhHHHHHHhhcccH
Confidence            78889999887666665    88899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCCh
Q 000275         1226 TCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNN 1305 (1739)
Q Consensus      1226 ~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~ 1305 (1739)
                      +++.+.++|+...|+.+...+|.++..|+..|.|++..+.|..+|.+|+.++.|.+....++...++.+++.++++.||.
T Consensus       629 ~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~s~~~~~~~~~~~l~~~~~  708 (815)
T KOG1820|consen  629 ALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVLSVLMMVPSLREALELKER  708 (815)
T ss_pred             HhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhccccccchhhHhhccccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHhHHHHHHHHHHHhhcCcccCccchHHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHHhccCCHHHHhhHHHHH
Q 000275         1306 RTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRF 1385 (1739)
Q Consensus      1306 r~R~Ecl~el~~li~~~G~~v~~~~Kal~~ia~~i~drD~~VR~AALn~l~~~y~~~Gd~v~k~~g~ls~k~~s~Leer~ 1385 (1739)
                      ++|.||++.+.+++..-|.+...-.+++..|+-...++|..+|+++.+++...|.+.|+.+|++.+.+.+.|+++++.||
T Consensus       709 ~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  788 (815)
T KOG1820|consen  709 EIRSEELLVIKLLFSSEGTSILKSLRVLNIIALLVKASDGKSSSKVKKTSWKPFDFLPDPSWKISILQADTDKSRIEKMF  788 (815)
T ss_pred             hhHHHHhhhhheeeccCCcchhhhHhhhhcccccccccchhhhhhhhcccccccccccchHHHHHHHhhHHHhhhHHHhc
Confidence            99999999999999999987654566789999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHH
Q 000275         1386 KWKVR 1390 (1739)
Q Consensus      1386 kr~~~ 1390 (1739)
                      ++..+
T Consensus       789 ~~~~~  793 (815)
T KOG1820|consen  789 PKERR  793 (815)
T ss_pred             Ccccc
Confidence            98655

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>smart00288 VHS Domain present in VPS-27, Hrs and STAM	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)	Back alignment and domain information

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein	Back alignment and domain information

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>PF13251 DUF4042: Domain of unknown function (DUF4042)	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM	Back alignment and domain information

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]	Back alignment and domain information

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>smart00288 VHS Domain present in VPS-27, Hrs and STAM	Back alignment and domain information

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised	Back alignment and domain information

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)	Back alignment and domain information

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PF13251 DUF4042: Domain of unknown function (DUF4042)	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1739
2of3_A		266	Tog Domain Structure From C.Elegans Zyg9 Length = 2		4e-26
2qk2_A		242	Structural Basis Of Microtubule Plus End Tracking B		1e-09
4ffb_C		278	A Tog:alphaBETA-Tubulin Complex Structure Reveals C		5e-06
2qk1_A		249	Structural Basis Of Microtubule Plus End Tracking B		5e-05

>pdb|2OF3|A Chain A, Tog Domain Structure From C.Elegans Zyg9 Length = 266

Back alignment and structure

Iteration: 1

Score = 117 bits (294), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 134/248 (54%), Gaps = 1/248 (0%) Query: 1139 KEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKAL 1198 KE+++ +V+ + F+ P E I +L+ + + L +L DFK+ + L+ L + Sbjct: 16 KEEKQLKLVK-WNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLA 74 Query: 1199 PSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFL 1258 + + ++ D+LL+W L+F ++N L+KVLE + + +RD +++ E + F+ Sbjct: 75 DTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFV 134 Query: 1259 PCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFL 1318 P L+ K+G + +R +R++ + + K P +L+ L+SKN R R EC+ ++ + Sbjct: 135 PYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYY 194 Query: 1319 IDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQK 1378 I + G L + VA ++D +R AA+N L +K G+ +W+ G++ D K Sbjct: 195 ITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDK 254 Query: 1379 SMLDDRFK 1386 S++++R K Sbjct: 255 SLVEERIK 262

PyMOL of 2of3

>pdb|2QK2|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215 And Eb1 Length = 242

Back alignment and structure

>pdb|4FFB|C Chain C, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 278

Back alignment and structure

>pdb|2QK1|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215, Clip-170 And Eb1 Length = 249

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1739
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	2e-72
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	2e-20
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	3e-20
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	3e-16
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	3e-16
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	1e-59
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	4e-22
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	3e-13
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	7e-13
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	5e-09
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	7e-57
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	2e-20
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	3e-16
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	4e-15
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	1e-07
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	6e-50
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	5e-26
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	5e-20
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	3e-16
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	2e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	2e-14
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	9e-14
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	7e-11
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	9e-11
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	6e-10
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	1e-07
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	2e-07
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	1e-06
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	5e-05
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	3e-11
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	1e-04
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	2e-09
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	9e-06
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	3e-09
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-05
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	1e-04
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	9e-08
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	7e-05
1qgr_A		876	Protein (importin beta subunit); transport recepto	8e-04

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266	Back alignment and structure

 Score =  242 bits (618), Expect = 2e-72
 Identities = 66/255 (25%), Positives = 134/255 (52%)

Query: 1133 NVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLE 1192
              K    ++ +++ + ++ F+ P  E I +L+  +    +  L  +L   DFK+ +  L+
Sbjct: 9    EDKKQRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALD 68

Query: 1193 MLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES 1252
             L +   +  + ++   D+LL+W  L+F ++N   L+KVLE    + + +RD    +++ 
Sbjct: 69   SLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128

Query: 1253 EAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECV 1312
            E + F+P L+ K+G   + +R  +R++   + +     K  P +L+ L+SKN R R EC+
Sbjct: 129  EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECL 188

Query: 1313 DLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGK 1372
             ++ + I + G      L   + VA    ++D  +R AA+N L   +K  G+ +W+  G+
Sbjct: 189  LVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGR 248

Query: 1373 LTDAQKSMLDDRFKW 1387
            + D  KS++++R K 
Sbjct: 249  MADKDKSLVEERIKR 263

PyMOL of 2of3

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1739
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-14
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	3e-13
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-11
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-10
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-09
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	4e-06
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	5e-07
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-06
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-05
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002
d1ibrb_		458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	5e-05
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	6e-04
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	0.001
d2vgla_		584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	0.002
d2vgla_		584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	0.002

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (190), Expect = 1e-14
 Identities = 153/1079 (14%), Positives = 314/1079 (29%), Gaps = 102/1079 (9%)

Query: 322  DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT 381
               +V + + KL+ D N  V   A++ +G L   ++ +       ++  L   +   K  
Sbjct: 42   SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVETIVDTLCTNMLSDKEQ 98

Query: 382  VAESLTQTLQAM------HKAGCLNLVDVVEDV-----KTSVKNKVPLVRSLTLNWVTFC 430
            + +  +  L+ +        +G     +V + +         K +   V+   L+ +   
Sbjct: 99   LRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 158

Query: 431  IETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490
            +       ++  H   +   +  L      VR      L  +  S G       IE L  
Sbjct: 159  LSRQGGL-LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLS 217

Query: 491  VRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSA 550
                  S     +        S       G  +  +      F       +         
Sbjct: 218  ELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFE 277

Query: 551  APASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVG 608
            +   +    V P      +   K  T       +D +  E +++            D   
Sbjct: 278  SFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYS 337

Query: 609  QLKSAVWKERLEAISSLRQQV-EAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 667
                  WK R  A   L   V    + L +  + +   +       E+NV+      +V 
Sbjct: 338  DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKA-----DVF 392

Query: 668  NYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK 727
            +   +   +       LC     E+     T       +           I + L+K MK
Sbjct: 393  HAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQ--SQVPN---------IVKALHKQMK 441

Query: 728  DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGL--QSSAAATRNATIKLLGA 785
            + K+ K        +   V     +  +   ++       L  +SS++  +   +  L  
Sbjct: 442  E-KSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYV 500

Query: 786  LHKFVGPD-IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDG 844
            +     P      +  + P +++ +   + K   E  +V ++ V+        SS  +  
Sbjct: 501  ILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATP 560

Query: 845  LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL 904
              +           +K L++ D     E  E     + +    +      +L   L+  L
Sbjct: 561  YIK-----DLFTCTIKRLKAADI--DQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFL 613

Query: 905  -YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECTLTVLDA 962
                N+   + T+  L  +A +      +   G    IL      N++ ++  TL+ LD 
Sbjct: 614  ERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDI 673

Query: 963  WLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMT 1022
             +                            + D +  +L  L    D        S  +T
Sbjct: 674  LIKNYSDSLT------------------AAMIDAVLDELPPLISESDMHVSQMAISF-LT 714

Query: 1023 DKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSK 1082
              +     +       IL           L+     A+    + + + G + +      +
Sbjct: 715  TLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLR 774

Query: 1083 SSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDR 1142
              +    S S  ++   +    ++ +    A        +  AV  Q + +VK+S   D 
Sbjct: 775  MLTGPVYSQSTALTHKQSYYSIAKCV----AALTRACPKEGPAVVGQFIQDVKNSRSTDS 830

Query: 1143 ERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIR 1202
             R+           +  + E+ + +    + +L   +L           E        ++
Sbjct: 831  IRL---------LALLSLGEVGHHIDLSGQLELKSVIL-----------EAFSSPSEEVK 870

Query: 1203 KDIIEVLDILLRW-------FVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAA 1255
                  L  +          FVLQ   S       +L  L E+  +    G    +    
Sbjct: 871  SAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVG---LKPYVE 927

Query: 1256 VFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLV 1315
                 L++      E  R  + E   ++      T  LP +   L S ++  R   V  V
Sbjct: 928  NIWALLLKHCECAEEGTRNVVAECLGKLTLIDPET-LLPRLKGYLISGSSYARSSVVTAV 986

Query: 1316 GFLIDHHGAEISGQLKSL-QIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKL 1373
             F I  H   I   LK+          + D  +R+ AL T  +        I   +  +
Sbjct: 987  KFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1045

PyMOL of d1u6gc_

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1739
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	100.0
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	100.0
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.94
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.89
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.86
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.67
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.65
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.65
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.6
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.43
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.2
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.02
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.79
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.77
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.12
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.11
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.05
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.01
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.0
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.27
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	97.21
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	96.78
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.58
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	96.42
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.34
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	96.16
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	95.4
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	94.89
d1ujka_		145	ADP-ribosylation factor binding protein Gga1 {Huma	94.74
d1dvpa1		145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	94.45
d1elka_		153	Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}	93.39
d1juqa_		151	ADP-ribosylation factor binding protein Gga3 {Huma	93.28
d1mhqa_		143	ADP-ribosylation factor binding protein Gga2 {Huma	92.31
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	91.54
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	90.23

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-26  Score=205.63  Aligned_cols=996  Identities=15%  Similarity=0.119  Sum_probs=506.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             80001486774678999999999841028-99861345111101221278899999999999999999727222335677
Q 000275           15 PWEDRLLHKNWKVRNEANIDLAALCDSIT-DPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKE   93 (1739)
Q Consensus        15 pl~erl~hK~WKaRl~ayeel~~~f~~~~-d~~d~~~~~~~~l~kk~v~DsN~~aqek~leal~~~l~~a~~~~~~~~~~   93 (1739)
                      .|-|++.|..+--|..|..+|.+.++... .-++..+.+....+-+.+.|+|.-||..++.++..++.....   .....
T Consensus         7 ~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~---~~~~~   83 (1207)
T d1u6gc_           7 NLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVET   83 (1207)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHHH
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCH---HHHHH
T ss_conf             999866798872999999999998723014457688999999999996799879999999999999976768---66999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HCC-------HHHHHHH----HHH-HHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             87999975204882237889999999984-010-------2549999----999-8510571228789999999999619
Q 000275           94 VCDAIAAKCLTGRPKTVEKAQAVFMLWVE-LEA-------VDVFLDV----MEK-AIKNKVAKAVVPAIDVMFQALSEFG  160 (1739)
Q Consensus        94 v~~~lveK~l~~r~~tk~~a~e~~l~~vE-~e~-------~~~v~e~----ll~-~~~~K~PKvv~aai~~l~~~l~~FG  160 (1739)
                      ++..+....++.....++.+.-++-..++ +..       ...+...    +.. ..+++++.+..+++..+.+++..||
T Consensus        84 l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g  163 (1207)
T d1u6gc_          84 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG  163 (1207)
T ss_dssp             HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999998568963265999999999999663200231127889999999998763477778999999999999998756


Q ss_pred             CCCCC-HHHHHHHCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf             88669-26788522353236685699989999999987518911147885134299999999999704799888522145
Q 000275          161 AKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRA  239 (1739)
Q Consensus       161 ~k~v~-~K~ilk~l~~lf~~~dk~VR~ea~~L~velyrwiG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs  239 (1739)
                      ....+ ...+++.+-+.+.|.+..||..|...+..+..+++...+.. ++..    .++.+    .+.  .....|    
T Consensus       164 ~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~-~~~~----ll~~l----~~~--~~~~~~----  228 (1207)
T d1u6gc_         164 GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVD-LIEH----LLSEL----SKN--DSMSTT----  228 (1207)
T ss_dssp             SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTT-HHHH----HHHHH----HHT--CSSCSC----
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHH-HHHH----HHHHH----CCC--CCHHHH----
T ss_conf             76687799999999988089998999999999999998779987999-9999----99987----059--988999----


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCC
Q ss_conf             775964211002579999998888899998995556895655687870135653201694999999999997541-5999
Q 000275          240 EQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRI  318 (1739)
Q Consensus       240 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~L~~l~~-~pki  318 (1739)
                                                                                     +.+++.+..+.. .+..
T Consensus       229 ---------------------------------------------------------------~~~~~~l~~l~~~~~~~  245 (1207)
T d1u6gc_         229 ---------------------------------------------------------------RTYIQCIAAISRQAGHR  245 (1207)
T ss_dssp             ---------------------------------------------------------------TTHHHHHHHHHHHSSGG
T ss_pred             ---------------------------------------------------------------HHHHHHHHHHHHHCCHH
T ss_conf             ---------------------------------------------------------------99999999999876154


Q ss_pred             CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             99992699999998713211899999999999999871010110034159999998214787899999999999998337
Q 000275          319 APGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC  398 (1739)
Q Consensus       319 ~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~  398 (1739)
                      ....+.+++..+-+.+.+.+-.+...++++++.++......+.+|...+++.+++.++.--....+..............
T Consensus       246 ~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~  325 (1207)
T d1u6gc_         246 IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGG  325 (1207)
T ss_dssp             GTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------------
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             67779999999998825861777899999999999867465445599999999998740730003467887765554011


Q ss_pred             CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCH
Q ss_conf             98465699999986248943389899999999940883688785554689998650789978899999999999998290
Q 000275          399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM  478 (1739)
Q Consensus       399 ~~l~~~~e~i~~al~~KnP~vk~et~~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~l~k~vGe  478 (1739)
                      .......+.........++.+|......|...+...+. .+......+++.++..+.|+++.||.++..+++.+.+..+.
T Consensus       326 ~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~-~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~  404 (1207)
T d1u6gc_         326 DDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE-MLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRP  404 (1207)
T ss_dssp             ----------------CTTHHHHHHHHHHHHHHTTCCT-THHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             01356678887522013389999999999868988899-99999999999999984598548999999999999973032


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             67889762079999999999982489999888887555688999998777630343333220025999998888877899
Q 000275          479 RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGG  558 (1739)
Q Consensus       479 ~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~  558 (1739)
                      ....                            .    ..                             +.    .     
T Consensus       405 ~~~~----------------------------~----~~-----------------------------~~----~-----  414 (1207)
T d1u6gc_         405 VQSW----------------------------L----CD-----------------------------PD----A-----  414 (1207)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             HHHH----------------------------H----HC-----------------------------HH----H-----
T ss_conf             1255----------------------------5----15-----------------------------48----8-----


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-CCCH
Q ss_conf             998998889998754666778998889899999889999804594769986300239999999999999988510-1322
Q 000275          559 PVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NLDQ  637 (1739)
Q Consensus       559 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~ss~WK~Rl~a~e~l~~~v~~~~-~~~~  637 (1739)
                                         .       ....++...-......+-..+...+.+.+++.|..++.-+.+.+...+ ....
T Consensus       415 -------------------~-------~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~  468 (1207)
T d1u6gc_         415 -------------------M-------EQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQ  468 (1207)
T ss_dssp             -----------------------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGG
T ss_pred             -------------------H-------HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             -------------------8-------76302699999876999999999864886567888999999999972257777


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHCHHH
Q ss_conf             37899999881589766329999999999999998428997320443300000011120001689999999997516476
Q 000275          638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGF  717 (1739)
Q Consensus       638 ~~e~Lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~k~~a~e~L~~~aE~~~~~~  717 (1739)
                      ....++..+...-+=+.+..++....+..+..+.                                       +...+..
T Consensus       469 ~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~---------------------------------------~~~~~~~  509 (1207)
T d1u6gc_         469 HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVIL---------------------------------------CNHSPQV  509 (1207)
T ss_dssp             GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHH---------------------------------------HSSCGGG
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---------------------------------------HHCCHHH
T ss_conf             6675678999997602641688899999999998---------------------------------------7226788


Q ss_pred             -------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC----CCH----HHHHHHHHH-HCCCCCCHHHHHHHHH
Q ss_conf             -------999999765215990469999999999998826676----553----768999764-0678860899999999
Q 000275          718 -------IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH----LKL----KDLIDFCKD-TGLQSSAAATRNATIK  781 (1739)
Q Consensus       718 -------V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~----i~~----K~li~~~k~-~~L~~sN~~VR~aai~  781 (1739)
                             +...+... ...+++++..+++..+...+.-++...    .+.    ..++..+-. ..-.+.+..||..++.
T Consensus       510 ~~~~~~~l~~~~~~~-~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~  588 (1207)
T d1u6gc_         510 FHPHVQALVPPVVAC-VGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAIS  588 (1207)
T ss_dssp             GHHHHTTTHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             999987633468888-7123088999999999988987500011025544788999999999998731310178898999


Q ss_pred             HHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             999999630711576420310999999999982099999989854444555757-8899999999965544667578984
Q 000275          782 LLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTS-SVSSGGSDGLPREDISGKFTPTLVK  860 (1739)
Q Consensus       782 Ll~~ly~~~G~~l~~~l~d~kpall~~ie~Ef~K~~~~~~p~p~R~~r~~~~~~-~~~~~~~d~lprvDIs~kit~~l~~  860 (1739)
                      .++.+-...|..+...+...=+.+...+.       .+    .+|......-.. .......+.   ..+...+.+.+..
T Consensus       589 ~l~~l~~~~~~~~~~~~~~~l~~l~~~l~-------~~----~~r~~a~~~l~~i~~~~~~~~~---~~~l~~~~~~l~~  654 (1207)
T d1u6gc_         589 CMGQIICNLGDNLGSDLPNTLQIFLERLK-------NE----ITRLTTVKALTLIAGSPLKIDL---RPVLGEGVPILAS  654 (1207)
T ss_dssp             HHHHHHHHTGGGCCTHHHHHHHHHHHHTT-------SS----SHHHHHHHHHHHHTTCSSCCCC---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CH----HHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHHH
T ss_conf             99989887655658888888777888742-------30----4579999999999873132147---8999888889877


Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             12899838889999999999987135778898342378775310203486899999999999985092367522301587
Q 000275          861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD  940 (1739)
Q Consensus       861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~iA~amG~~~~k~~k~l~~~  940 (1739)
                      .+.+.+|..|..+++.+..++......+.+..+..+...|...+.|++..+...++.+++.++...+.....+...+++.
T Consensus       655 ~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~  734 (1207)
T d1u6gc_         655 FLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNE  734 (1207)
T ss_dssp             HTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHH
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             50144388999999999999984542100677766777632444344078899999998888862633446678888999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             98771568366999999999999996140233588999972155891118999999999733699986424435577620
Q 000275          941 ILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1020 (1739)
Q Consensus       941 il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~ 1020 (1739)
                      ++..+.+.-  +...+..++...+..             +.....+.....+++..+...+....               
T Consensus       735 l~~~~~s~l--~~~~~~~~~~~~~~~-------------l~~~~~~~~~~~~l~~~l~~~~~~~~---------------  784 (1207)
T d1u6gc_         735 LIGLVRSPL--LQGGALSAMLDFFQA-------------LVVTGTNNLGYMDLLRMLTGPVYSQS---------------  784 (1207)
T ss_dssp             HHHHHTCTT--CCHHHHHHHHHHHHH-------------HHTTCCTTCSHHHHHHHHSTTTTTC----------------
T ss_pred             HHHHHCCCH--HHHHHHHHHHHHHHH-------------HHHCCCCCCCHHHHHHHHHHHHCCCC---------------
T ss_conf             999860823--555469999999999-------------98606665444999999987512543---------------


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             47899879999999999999961888999874016932499999999840688888899988888888888989877897
Q 000275         1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGN 1100 (1739)
Q Consensus      1021 L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1100 (1739)
                      ..............+++.+....+...            ...+...++...                             
T Consensus       785 ~~~~~~~~~~~~~~~i~~l~~~~~~~~------------~~~l~~~l~~~~-----------------------------  823 (1207)
T d1u6gc_         785 TALTHKQSYYSIAKCVAALTRACPKEG------------PAVVGQFIQDVK-----------------------------  823 (1207)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHSCCCS------------HHHHTTTTTTTT-----------------------------
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH-----------------------------
T ss_conf             034578899999999999998632667------------999999999884-----------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHH-HHHHCC---CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7776666788899987532210122221110136899868888-634123---223489935799999999886259999
Q 000275         1101 RAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRE-RMVVRR---FKFEDPRIEQIQELENDMMKYFREDLH 1176 (1739)
Q Consensus      1101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~-~~~~~k---w~f~~pr~e~ve~L~~q~~~~~~~~l~ 1176 (1739)
                                . .                      ......|. .+..+-   ..........+.           ..+.
T Consensus       824 ----------~-~----------------------~~~~~~~~~al~~Lge~~~~~~~~~~~~l~-----------~~l~  859 (1207)
T d1u6gc_         824 ----------N-S----------------------RSTDSIRLLALLSLGEVGHHIDLSGQLELK-----------SVIL  859 (1207)
T ss_dssp             ----------T-T----------------------TCCHHHHHHHHHHHHHHHHHSCCCSCTHHH-----------HHHH
T ss_pred             ----------C-C----------------------CCHHHHHHHHHHHHHHHHHHCCCCCHHHHH-----------HHHH
T ss_conf             ----------3-4----------------------225999999999999999852531159999-----------9999


Q ss_pred             HHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             96224188889999999997369881356676779999998840675269999975116999999874087543767865
Q 000275         1177 RRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAV 1256 (1739)
Q Consensus      1177 ~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~~lDlilkw~tlr~~dtN~~vl~k~Le~l~~lf~~l~~~~y~lse~Ea~~ 1256 (1739)
                      ..+.+.+..-+.+|...+-.....+....   +..+++-     .++.+..-.-   ++..+.+.+...+.......+..
T Consensus       860 ~~l~~~~~~vr~aAa~aLg~l~~~~~~~~---lp~il~~-----l~~~~~~~~~---ll~al~ei~~~~~~~~~~~~~~~  928 (1207)
T d1u6gc_         860 EAFSSPSEEVKSAASYALGSISVGNLPEY---LPFVLQE-----ITSQPKRQYL---LLHSLKEIISSASVVGLKPYVEN  928 (1207)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHHHTHHHH---HHHHHHH-----HHSCGGGHHH---HHHHHHHHHHSSCSTTTHHHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-----HHCCCHHHHH---HHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             98089988999999999999997628887---5999998-----7247358999---99999999985455546878999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCH-HHH
Q ss_conf             6569987417883789999999999871026730027999854203780358689999999998515764576320-899
Q 000275         1257 FLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKS-LQI 1335 (1739)
Q Consensus      1257 flP~Li~K~Gd~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v~~~~Ka-l~~ 1335 (1739)
                      +++.|...+.+..+.+|...-+.+-.++.++| ..+++.|.+.+++.|+.+|..++.-+.+++...|...-.-.+. ++.
T Consensus       929 i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~-~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ 1007 (1207)
T d1u6gc_         929 IWALLLKHCECAEEGTRNVVAECLGKLTLIDP-ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGD 1007 (1207)
T ss_dssp             HHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG-GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTT
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             99999988179718799999999998870278-99999999985799999999999999999986655467899999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf             9977206774689999999999998734368998
Q 000275         1336 VASLTAERDGEIRKAALNTLATGYKILGEDIWRY 1369 (1739)
Q Consensus      1336 ia~~i~drD~~VR~AALn~l~~~y~~~Gd~i~k~ 1369 (1739)
                      .-..++|.|..||.+|+.++.++-..-++-|.-+
T Consensus      1008 ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~ 1041 (1207)
T d1u6gc_        1008 FLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDL 1041 (1207)
T ss_dssp             THHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGG
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf             9998679998999999999999998486989999

PyMOL of d1u6gc_

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure