Citrus Sinensis ID: 000304
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1697 | 2.2.26 [Sep-21-2011] | |||||||
| Q4KKX4 | 2494 | Nuclear receptor corepres | yes | no | 0.146 | 0.099 | 0.266 | 4e-17 | |
| O75376 | 2440 | Nuclear receptor corepres | no | no | 0.147 | 0.102 | 0.238 | 4e-16 | |
| Q60974 | 2453 | Nuclear receptor corepres | yes | no | 0.147 | 0.101 | 0.238 | 6e-16 | |
| Q8QG78 | 2498 | Nuclear receptor corepres | N/A | no | 0.146 | 0.099 | 0.259 | 3e-15 | |
| Q9Y618 | 2525 | Nuclear receptor corepres | no | no | 0.147 | 0.099 | 0.236 | 8e-14 | |
| Q9WU42 | 2472 | Nuclear receptor corepres | no | no | 0.147 | 0.101 | 0.24 | 1e-13 | |
| Q55DP9 | 1448 | Myb-like protein P OS=Dic | yes | no | 0.064 | 0.075 | 0.336 | 2e-11 | |
| Q10369 | 661 | Uncharacterized protein C | yes | no | 0.110 | 0.282 | 0.260 | 2e-06 | |
| Q6NRZ0 | 503 | REST corepressor 2 OS=Xen | N/A | no | 0.137 | 0.465 | 0.214 | 1e-05 | |
| Q8BXJ2 | 1205 | Transcriptional-regulatin | no | no | 0.030 | 0.043 | 0.436 | 3e-05 |
| >sp|Q4KKX4|NCOR1_XENTR Nuclear receptor corepressor 1 OS=Xenopus tropicalis GN=ncor1 PE=2 SV=1 | Back alignment and function desciption |
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Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 131/274 (47%), Gaps = 25/274 (9%)
Query: 531 LCDMILGANKELANEASEVLKKLLPRDHSNIDISGVANVFCCQNDSLVKEKFAKKKQLLR 590
+ +I N++ A EA ++L+ L P+ + + + ++++ + +KK +L
Sbjct: 227 IVQIIYDENRKKAEEAHKILEGLGPK--VELPLYNQPSDTKVYHENIKTNQVMRKKLILF 284
Query: 591 FKERVLTLKFKAFQHLWREDLRLLSIRKYRAR----SQKKCELSLRTTYTGYQKHRSSIR 646
FK R K + R D + + K R ++K + S Y Y+K IR
Sbjct: 285 FKRRNHARKLREQNICQRYDQLMEAWEKKVDRIENNPRRKAKESKTREY--YEKQFPEIR 342
Query: 647 ---------SRFSSPAAGNLSLV-----QTAEVINFTSKLLSDSQIKTYRNSLKMPALIL 692
R AG + + + +E+I+ S+ ++ K R +P ++
Sbjct: 343 KQREQQERFQRVGQRGAGLSATIARSEHEISEIIDGLSE--QENNEKQMRQLSVIPPMMF 400
Query: 693 DKKEKMSSRFISSNGLVEDPCAVEKERAMINPWTSEEREIFVDKLATFGKDFRKIASFLN 752
D E+ +FI+ NGL+EDP V K+R +N WT E+EIF +K K+F IAS+L
Sbjct: 401 DA-EQRRVKFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFKEKFVQHPKNFGLIASYLE 459
Query: 753 YKTTADCVEFYYKNHKSDCFEKLKKKHDFSKQGK 786
KT +DCV +YY K++ F+ L +++ ++G+
Sbjct: 460 RKTVSDCVLYYYLTKKNENFKALVRRNYPKRRGR 493
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Mediates transcriptional repression by certain nuclear receptors. Participates in complexes which promote histone deacetylation and the formation of repressive chromatin structures which may impede access by the basal transcription machinery. Xenopus tropicalis (taxid: 8364) |
| >sp|O75376|NCOR1_HUMAN Nuclear receptor corepressor 1 OS=Homo sapiens GN=NCOR1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q60974|NCOR1_MOUSE Nuclear receptor corepressor 1 OS=Mus musculus GN=Ncor1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8QG78|NCOR1_XENLA Nuclear receptor corepressor 1 OS=Xenopus laevis GN=ncor1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9Y618|NCOR2_HUMAN Nuclear receptor corepressor 2 OS=Homo sapiens GN=NCOR2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9WU42|NCOR2_MOUSE Nuclear receptor corepressor 2 OS=Mus musculus GN=Ncor2 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q55DP9|MYBP_DICDI Myb-like protein P OS=Dictyostelium discoideum GN=mybP PE=3 SV=1 | Back alignment and function description |
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| >sp|Q10369|YDBJ_SCHPO Uncharacterized protein C22E12.19 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC22E12.19 PE=4 SV=2 | Back alignment and function description |
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| >sp|Q6NRZ0|RCOR2_XENLA REST corepressor 2 OS=Xenopus laevis GN=rcor2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8BXJ2|TREF1_MOUSE Transcriptional-regulating factor 1 OS=Mus musculus GN=Trerf1 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1697 | ||||||
| 147771380 | 1971 | hypothetical protein VITISV_026902 [Viti | 0.955 | 0.822 | 0.573 | 0.0 | |
| 359486527 | 1940 | PREDICTED: uncharacterized protein LOC10 | 0.951 | 0.831 | 0.579 | 0.0 | |
| 224112993 | 1659 | predicted protein [Populus trichocarpa] | 0.939 | 0.961 | 0.571 | 0.0 | |
| 224097993 | 1666 | predicted protein [Populus trichocarpa] | 0.883 | 0.899 | 0.553 | 0.0 | |
| 357443347 | 1682 | Nuclear receptor corepressor [Medicago t | 0.918 | 0.926 | 0.477 | 0.0 | |
| 358349062 | 1655 | Nuclear receptor corepressor [Medicago t | 0.902 | 0.925 | 0.472 | 0.0 | |
| 356533979 | 1372 | PREDICTED: uncharacterized protein LOC10 | 0.726 | 0.898 | 0.526 | 0.0 | |
| 449449471 | 1649 | PREDICTED: uncharacterized protein LOC10 | 0.899 | 0.926 | 0.433 | 0.0 | |
| 449487289 | 1620 | PREDICTED: uncharacterized LOC101222167 | 0.884 | 0.926 | 0.429 | 0.0 | |
| 255588075 | 1651 | conserved hypothetical protein [Ricinus | 0.573 | 0.589 | 0.529 | 0.0 |
| >gi|147771380|emb|CAN62996.1| hypothetical protein VITISV_026902 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1692 bits (4381), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1005/1752 (57%), Positives = 1225/1752 (69%), Gaps = 131/1752 (7%)
Query: 1 MPEDESTRISVSRGDG--KYGRNSRENRSSFCQSDCKGYAWDTSNGYATTPGRLHEVNCN 58
M EDE++R RGDG KY RN+RE R SF Q D KG+ +T N GR +N +
Sbjct: 81 MVEDENSRPFTXRGDGNGKYSRNNREIRGSFSQKDWKGHPLETGNASPNMSGRSLAIN-D 139
Query: 59 QRSVDDMLTYPSHPQSDFVT-WDHLQLKDQHDNKIGSVNGLATGQRCESENSL---DWKK 114
QRSVDDML + SDFV WD LQLKDQHD K+GSVNGL TGQR E ENSL DWK
Sbjct: 140 QRSVDDMLIH-----SDFVNGWDQLQLKDQHD-KMGSVNGLGTGQRAERENSLSSIDWKP 193
Query: 115 IKWTRSGSLSSRGSGLSHSSSSKSMGGVDSSEGKTDFQVKNATSIQSPSGDAATYATSGV 174
+KWTRSGSLSSRGSG SHSSSSKSMG VDS+E + D Q +N T +QSPSGDA S
Sbjct: 194 LKWTRSGSLSSRGSGFSHSSSSKSMG-VDSNEARGDLQXRNVTPVQSPSGDAVACVASTA 252
Query: 175 LFEETTSRKKPRLGWGEGLAKYEKKKVEVPDVSGNKDGVFNFSSNAEPLQSLSSNLAEKS 234
EET+SRKKPRLGWGEGLAKYE+KKVE PD S NK+G+ +SN E SL+SNLA+KS
Sbjct: 253 PSEETSSRKKPRLGWGEGLAKYERKKVEGPDESVNKNGIVFCTSNGESTHSLNSNLADKS 312
Query: 235 PRVMGFSDCASPATPSSVACSSSPGVEEKAFGKAVSVDNDVSNLCGSPSIVSQNHREGFL 294
PRVMGFSDCASPATPSSVACSSSPG+E+K+F KA +VDND S L GSP VS NH +GF
Sbjct: 313 PRVMGFSDCASPATPSSVACSSSPGMEDKSFSKAGNVDNDTSTLSGSPGPVSLNHLDGFS 372
Query: 295 FNLEKLDTNSIGNLGSSLVELLQYDDPSSVDSSFVRSTAMNKLLVWKGDILKTLEMTETE 354
F LE L+ N I NLG S +ELLQ DDPSSVDS+F+RSTAM+KLL+WKGDI K+LEMTE+E
Sbjct: 373 FILESLEPNQIANLGFSPIELLQSDDPSSVDSNFMRSTAMSKLLIWKGDISKSLEMTESE 432
Query: 355 IDSLENELKSLKSVLGSTSPCPVTSISLSVEDNANPFNKQGTVSNSIIRPAPLQI-DCGD 413
ID+LENELKSLKS GS+ PCP S S VE A P +QG SN I+RPAPLQI GD
Sbjct: 433 IDTLENELKSLKSGSGSSCPCPAASSSFPVEGKAKPCEEQGAASNLILRPAPLQIVPPGD 492
Query: 414 LSVENMPDCSHGLEEVHGNSKDEDIDSPGTATSKFVEPSSFVKPVSPSNMLKNGESFGVL 473
+ + S +E+ H KDEDIDSPGTATSKFVEP VK SPS+M+ GE G L
Sbjct: 493 MMTDKTLLGSDAMEDAHAEVKDEDIDSPGTATSKFVEPPCLVKTASPSDMVIQGECSGNL 552
Query: 474 DTVHSSNTEVKCTMPGSSFGEVVAGASTC-GDGDMILESKNDALISSNFSAYADGENMLC 532
S+N EV+ + G + E G ST GD +++ESK A +S + D E+ +
Sbjct: 553 KITRSTNMEVELLVSGPNVEET--GISTSGGDSRLLVESKTGARVSGDMGVLDDEEDKIY 610
Query: 533 DMILGANKELANEASEVLKKLLPRDHSNIDISGVANVFCCQNDSLVKEKFAKKKQLLRFK 592
++IL +NK+ AN ASEV KLLP++ DI G AN C QNDSL+K+KFA +K+ LRFK
Sbjct: 611 NLILASNKDCANRASEVFNKLLPQNQCQNDILGAANFACRQNDSLIKQKFAMRKRFLRFK 670
Query: 593 ERVLTLKFKAFQHLWREDLRLLSIRKYRARSQKKCELSLRTTYTGYQKHRSSIRSRFSSP 652
E+V+TLKF+ QH+W+ED+RLLSIRKYRA+SQKK ELSLRT++ GYQKHRSSIRSRFSSP
Sbjct: 671 EKVITLKFRVSQHVWKEDMRLLSIRKYRAKSQKKFELSLRTSHCGYQKHRSSIRSRFSSP 730
Query: 653 AA-------------------GNLSLVQTAEVINFTSKLLSDSQIKTYRNSLKMPALILD 693
A GNLS V TAE+IN+TSK+LS+SQ+K RN LKMPALILD
Sbjct: 731 GADFFLNLVLALFFEKLAVQPGNLSPVPTAEMINYTSKMLSESQMKLCRNILKMPALILD 790
Query: 694 KKEKMSSRFISSNGLVEDPCAVEKERAMINPWTSEEREIFVDKLATFGKDFRKIASFLNY 753
KKEK +SRFISSNGLVEDPCAVE ER MINPWT+EE+EIF+DKLA FGK+F+KIASFL++
Sbjct: 791 KKEKTASRFISSNGLVEDPCAVENERTMINPWTAEEKEIFMDKLAIFGKEFKKIASFLDH 850
Query: 754 KTTADCVEFYYKNHKSDCFEKLKKKHDFSKQGKT-STNTYLVTTGKR-NRKMNAASLDIL 811
KTTADCVEFYYKNHKSDCFEK KKK + KQGK+ S TYLVT+GK+ NR+MNAASLD+L
Sbjct: 851 KTTADCVEFYYKNHKSDCFEKTKKKLELRKQGKSLSATTYLVTSGKKWNREMNAASLDML 910
Query: 812 GEASEIAAAAQVDGRQL-ISSGRISSGGRGDSRTSLGDDGIIERSSSFDVIGGERETAAA 870
G AS +AA A L G+ G D RT GD+G++ERSSS+D+I ERET AA
Sbjct: 911 GAASVMAARAGDSMENLQTCPGKFLLGAHHDYRTPHGDNGVVERSSSYDIIRNERETVAA 970
Query: 871 DVLAGICGSLSSEAMSSCITSSVDPAEGQRDWRRQKADSVMRLPSTSDVTQNVDDDTCSD 930
DVLAGICGSLSSEAMSSCITSS+DP EG R+ RQK S ++ P T +VTQ++ ++TCSD
Sbjct: 971 DVLAGICGSLSSEAMSSCITSSLDPGEGYREL-RQKVGSGVKRPLTPEVTQSIAEETCSD 1029
Query: 931 ESCGEMDPSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLGLDL 990
ESCGEMDP+DWTDEEK IF+QAV+SYGKDF+ I+RC+RTRSRDQCKVFFSKARKCLGLDL
Sbjct: 1030 ESCGEMDPADWTDEEKCIFVQAVSSYGKDFAKISRCVRTRSRDQCKVFFSKARKCLGLDL 1089
Query: 991 IHTGRGNVGPSVNDDANGGGSDTEDACVLETSSVNCSDKLGSKTDEELPSHVIHSNQEES 1050
IH G NVG +DDANGGGSDTEDACV+E SV CS+K GSK +E+ V++ N +ES
Sbjct: 1090 IHPG-PNVGTPESDDANGGGSDTEDACVVEAGSVICSNKSGSKMEEDSLLSVLNINPDES 1148
Query: 1051 CSAGAKNLQTDLNKPEDDNGITPLNDKDSEAVKPVNNDAFRTESRSFEL--ESNNMNGMD 1108
+G KNLQTDLN+ ++NGI ++ KD E V + +D ++ ++ +SN++NG+D
Sbjct: 1149 DFSGMKNLQTDLNRSYENNGIGRVDHKDDETVTNLVSDKCHQLEKTEQVFGDSNSLNGID 1208
Query: 1109 NQSESVLDQKNAVELFKTAVRDKVAEQGAVSVSAGEESDPCPSSSNAVEETNDVVAEAST 1168
++S ++ +KN E SVSA E +DP SNAV + AE T
Sbjct: 1209 SKSLTLHVEKNGP--------CTKMEMDHESVSAVEATDPS-DRSNAVSQ-----AEDXT 1254
Query: 1169 EGFGNGLERYQPMLLENSLNDVRDKICNVDACGESEI---VQDS-----------NTTGS 1214
EG +L E SLN R++ + D G+ + V+DS N+T
Sbjct: 1255 EG---------NLLPETSLNVRREENXDADTSGQMSLKCTVKDSEVKENALHQVXNSTSC 1305
Query: 1215 AFDLYVDASSHSVSSKLDSVDKPPLISLPQWNSHPAAAST-QDSSVIQCEKAFIQDRMSS 1273
++ VS +LD+ KP +ISL Q +S A S +DSSVIQ EK Q S
Sbjct: 1306 PRFIFNSGCQDQVSVELDN-QKPGVISLLQESSLMAEDSVPKDSSVIQYEKTLDQGMSPS 1364
Query: 1274 TLEFQRSKDKSGHKSVVSDDYRQHLSVHSIVN---HVESPQILNGYPLPISTKKEMNGDI 1330
TL+ + +KDK +KS+ D+Y QHLS HS++N + E Q + G PL K++MN D+
Sbjct: 1365 TLDLKETKDK--NKSIGVDEYHQHLSGHSLLNNAVNAELSQKVGGCPLQTPPKEDMNRDL 1422
Query: 1331 NCRQLSE-VQSISKSDRNIDEPY-LAQDCYLRKCNSSMPHSSVTELPFLAENIEQTSDRR 1388
+C+ S + +SK DR+I + LAQDCYL+KCN S HS TELPFL++++E+TS++
Sbjct: 1423 SCKNPSSAAERLSKLDRDIQSSHSLAQDCYLQKCNGSKSHSLGTELPFLSQSLERTSNQT 1482
Query: 1389 RAHSCSFSDTEKPSKNGDVKLFGKILSHPSSSQKSAFSSHDNGENGHHH-KQSSKASNLK 1447
RAH S SDTEK S+NGD KLFG+ILSHP S Q S++N + G H+ K SSK+ NLK
Sbjct: 1483 RAHGRSLSDTEKTSRNGDFKLFGQILSHPPSLQNPNSCSNENDDKGAHNPKLSSKSVNLK 1542
Query: 1448 FTAHHPPDGGAALLKFDRNNYVGLENGPARSYGFWDGSKIQTGFSSLPDSAILLAKYPAA 1507
FT HH DG K DRNNY+GLEN P SYGFWDG++IQTGFSSLPDS +LLAKYPAA
Sbjct: 1543 FTGHHCIDGNLGASKVDRNNYLGLENLPM-SYGFWDGNRIQTGFSSLPDSTLLLAKYPAA 1601
Query: 1508 FGGYPASSS-KMEQQSLQAAVVKSNERHLNGVAVVPPREISSSNGVVDY-QVYRSREGNK 1565
F YP SSS K+EQQSLQ VVKSNER+LNG++V P R++SSSNGV DY QV+R R+ K
Sbjct: 1602 FSNYPMSSSTKIEQQSLQ-TVVKSNERNLNGISVFPTRDMSSSNGVADYHQVFRGRDCTK 1660
Query: 1566 VQPFSVDMKQRQEFLFAEMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNGFE 1625
+QPF+VDMKQRQ+ LF+EMQ RNGFE
Sbjct: 1661 LQPFTVDMKQRQD-LFSEMQ----------------------------------RRNGFE 1685
Query: 1626 ALSSIQQQGKGMVGVNVVGRGGILVGGGSCTGVSDPVAAIRMHYAK-AEQYGGQGGSIIR 1684
A+SS+Q G+GMVG+NVVGRGGILVGG VSDPVAAI+MHYAK +Q+GGQGGSIIR
Sbjct: 1686 AVSSLQAPGRGMVGMNVVGRGGILVGGACTPSVSDPVAAIKMHYAKTTDQFGGQGGSIIR 1745
Query: 1685 EEESWRGKGDIG 1696
++ESWRG GDIG
Sbjct: 1746 DDESWRGNGDIG 1757
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486527|ref|XP_002274774.2| PREDICTED: uncharacterized protein LOC100240985 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224112993|ref|XP_002316354.1| predicted protein [Populus trichocarpa] gi|222865394|gb|EEF02525.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224097993|ref|XP_002311103.1| predicted protein [Populus trichocarpa] gi|222850923|gb|EEE88470.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|357443347|ref|XP_003591951.1| Nuclear receptor corepressor [Medicago truncatula] gi|355480999|gb|AES62202.1| Nuclear receptor corepressor [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|358349062|ref|XP_003638559.1| Nuclear receptor corepressor [Medicago truncatula] gi|355504494|gb|AES85697.1| Nuclear receptor corepressor [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356533979|ref|XP_003535535.1| PREDICTED: uncharacterized protein LOC100806246 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449449471|ref|XP_004142488.1| PREDICTED: uncharacterized protein LOC101222167 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449487289|ref|XP_004157553.1| PREDICTED: uncharacterized LOC101222167 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|255588075|ref|XP_002534495.1| conserved hypothetical protein [Ricinus communis] gi|223525187|gb|EEF27889.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1697 | ||||||
| TAIR|locus:2100529 | 1656 | AT3G52250 [Arabidopsis thalian | 0.375 | 0.385 | 0.419 | 4.5e-207 | |
| UNIPROTKB|E9PGV6 | 914 | NCOR1 "Nuclear receptor corepr | 0.147 | 0.274 | 0.231 | 3.7e-19 | |
| ZFIN|ZDB-GENE-030616-81 | 2325 | ncor2 "nuclear receptor co-rep | 0.156 | 0.114 | 0.232 | 4.5e-19 | |
| UNIPROTKB|O75376 | 2440 | NCOR1 "Nuclear receptor corepr | 0.147 | 0.102 | 0.231 | 1.3e-18 | |
| UNIPROTKB|E2RKW5 | 2444 | NCOR1 "Uncharacterized protein | 0.147 | 0.102 | 0.231 | 1.8e-17 | |
| MGI|MGI:1349717 | 2453 | Ncor1 "nuclear receptor co-rep | 0.147 | 0.102 | 0.231 | 5.1e-17 | |
| UNIPROTKB|F1SDC8 | 1952 | NCOR1 "Uncharacterized protein | 0.147 | 0.128 | 0.231 | 3.9e-16 | |
| UNIPROTKB|F1MGM4 | 2436 | NCOR1 "Uncharacterized protein | 0.146 | 0.101 | 0.234 | 5.2e-16 | |
| UNIPROTKB|J9P1J2 | 1449 | NCOR1 "Uncharacterized protein | 0.147 | 0.173 | 0.231 | 5.8e-16 | |
| UNIPROTKB|E1BSW5 | 2480 | NCOR1 "Uncharacterized protein | 0.147 | 0.101 | 0.227 | 7.1e-16 |
| TAIR|locus:2100529 AT3G52250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1151 (410.2 bits), Expect = 4.5e-207, Sum P(6) = 4.5e-207
Identities = 285/680 (41%), Positives = 399/680 (58%)
Query: 517 ISSNFSAYADGENMLCDMILGANKELANEASEVLKKLLPRDHSNIDISGVANVFCCQNDS 576
+SS + A E++ +L ANK+ A E+S V +LLPRD ++ D S + Q DS
Sbjct: 660 VSSADDSMASKEDLFWAKLLSANKKYACESSGVFNQLLPRDFNSSDNSRFPGICQTQFDS 719
Query: 577 LVKEKFAKKKQLLRFKERVLTLKFKAFQHLWREDLRLLSIRKYRARSQKKCELSLRTTYT 636
V+EK A + LLR +E++L L+FKAFQ W++DL L++ KY+++S KK EL
Sbjct: 720 HVQEKIADRVGLLRAREKILLLQFKAFQLSWKKDLDQLALAKYQSKSSKKTELYPNAKNG 779
Query: 637 GYQKHRSSIRSRFSSPAAGNLSLVQTAEVINFTSKLLSDSQIKTYRNSLKMPALILDKKE 696
GY K S+R RFSS A S+V T E++++ KLL + +K +R+ LKMPA+ILD+KE
Sbjct: 780 GYLKLPQSVRLRFSSSAPRRDSVVPTTELVSYMEKLLPGTHLKPFRDILKMPAMILDEKE 839
Query: 697 KMSSRFISSNGLVEDPCAVEKERAMINPWTSEEREIFVDKLATFGKDFRKIASFLNYKTT 756
++ SRFISSNGL+EDPC VEKER MINPWTSEE+EIF++ LA GKDF+KIAS L KTT
Sbjct: 840 RVMSRFISSNGLIEDPCDVEKERTMINPWTSEEKEIFLNLLAMHGKDFKKIASSLTQKTT 899
Query: 757 ADCVEFYYKNHKSDCFEKLKKKHDFSKQGKTSTNTYLVTTGKR-NRKMNAASLDILGEAS 815
ADC+++YYKNHKSDCF K+KK+ + K+GK +TY++ K+ R+M AASLDILG+ S
Sbjct: 900 ADCIDYYYKNHKSDCFGKIKKQRAYGKEGK---HTYMLAPRKKWKREMGAASLDILGDVS 956
Query: 816 EIAA-AAQVDGRQXXXXXXXXXXXXXXXXXXXXXXXIIERSS-SFDVIGGERETAAADVL 873
IAA A +V + E S SFD + TA ADVL
Sbjct: 957 IIAANAGKVASTRPISSKKITLRGCSSANSLQHDGNNSEGCSYSFDF--PRKRTAGADVL 1014
Query: 874 AGICGSLSSEAMSSCITSSVDPAEGQRDWRRQKADSVMRLPSTSDV------------TQ 921
A G LS E ++SC+ +SV E D K + V++ P S
Sbjct: 1015 A--VGPLSPEQINSCLRTSVSSRERCMD--HLKFNHVVKKPRISHTLHNENSNTLHNENS 1070
Query: 922 NVDDDTCSDESCGEMDPSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSK 981
N +DD+CS+ESCGE P WTD+E+S FIQ + +GK+F+ I+R + TRS DQCKVFFSK
Sbjct: 1071 NEEDDSCSEESCGETGPIHWTDDERSAFIQGFSLFGKNFASISRYVGTRSPDQCKVFFSK 1130
Query: 982 ARKCLGLDLIHTGRGNVGPSVN-DDAN-GGGSDTEDACVLETSSVNCSDKLGSKTDEELP 1039
RKCLGL+ I G GNV SV+ D+ N GGGSD ED C +E++S ++ + +K P
Sbjct: 1131 VRKCLGLESIKFGSGNVSTSVSVDNGNEGGGSDLEDPCPMESNSGIVNNGVCAKMGMNSP 1190
Query: 1040 SHVIHSNQEESCSAGAKNLQTDLNKPEDDNGITPLNDKDSEAVKPVNNDAFRTESRSFEL 1099
+ + NQ+ +G+ N++ DL++ E++NG L KD + VNN S
Sbjct: 1191 TSPFNMNQDGVNQSGSANVKADLSRSEEENGQKYLCLKDDNNL--VNNAYVNGGFPSLVS 1248
Query: 1100 ESN----NMNGMDNQSESVLDQKNAVELFKTAVRDKVAEQGAVSVSAGEESDPCPSS--S 1153
ES ++N +++QS++ K+ +L + + V SV+ E C S S
Sbjct: 1249 ESCRDLVDINTVESQSQAAGKSKSN-DLMSMEIDEGVL----TSVTISSEPLYCGLSVLS 1303
Query: 1154 NAVEETNDVVAEASTEGFGN 1173
N + ET E S +G G+
Sbjct: 1304 NVIVETP---TEISRKGSGD 1320
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| UNIPROTKB|E9PGV6 NCOR1 "Nuclear receptor corepressor 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030616-81 ncor2 "nuclear receptor co-repressor 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|O75376 NCOR1 "Nuclear receptor corepressor 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RKW5 NCOR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| MGI|MGI:1349717 Ncor1 "nuclear receptor co-repressor 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1SDC8 NCOR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1MGM4 NCOR1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9P1J2 NCOR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BSW5 NCOR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00102138 | hypothetical protein (1659 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1697 | |||
| cd11661 | 46 | cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Doma | 9e-09 | |
| smart00717 | 49 | smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII | 8e-08 | |
| cd00167 | 45 | cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- | 1e-07 | |
| cd00167 | 45 | cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- | 1e-07 | |
| smart00717 | 49 | smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII | 4e-07 | |
| pfam00249 | 47 | pfam00249, Myb_DNA-binding, Myb-like DNA-binding d | 6e-07 | |
| pfam00249 | 47 | pfam00249, Myb_DNA-binding, Myb-like DNA-binding d | 7e-07 |
| >gnl|CDD|212559 cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Domain of MTA3 and related proteins | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 9e-09
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 725 WTSEEREIFVDKLATFGKDFRKI-ASFLNYKTTADCVEFYY 764
W+ E ++F + L +GKDF I FL +K+ + VEFYY
Sbjct: 2 WSESEAKLFEEGLRKYGKDFHDIRQDFLPWKSVGELVEFYY 42
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Members in this SANT/myb family include domains found in mouse metastasis-associated protein 3 (MTA3) proteins and arginine-glutamic dipeptide (RERE) repeats proteins. SANT (SWI3, ADA2, N-CoR and TFIIIB) DNA-binding domains are a diverse set of proteins that share a common 3 alpha-helix bundle. MTA3 has been shown to interact with nucleosome remodeling and deacetylase (NuRD) proteins CHD4 and HDAC1, and the core cohesin complex protein RAD21 in the ovary, and regulate G2/M progression in proliferating granulosa cells. RERE belongs to the atrophin family and has been identified as a nuclear receptor corepressor; altered expression levels of RERE are associated with cancer in humans while mutations of Rere in mice cause failure in closing the anterior neural tube and fusion of the telencephalic and optic vesicles during embryogenesis. Length = 46 |
| >gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains | Back alignment and domain information |
|---|
| >gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains | Back alignment and domain information |
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| >gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains | Back alignment and domain information |
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| >gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains | Back alignment and domain information |
|---|
| >gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain | Back alignment and domain information |
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| >gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1697 | |||
| KOG1878 | 1672 | consensus Nuclear receptor coregulator SMRT/SMRTER | 100.0 | |
| KOG1878 | 1672 | consensus Nuclear receptor coregulator SMRT/SMRTER | 100.0 | |
| KOG1194 | 534 | consensus Predicted DNA-binding protein, contains | 99.56 | |
| PF00249 | 48 | Myb_DNA-binding: Myb-like DNA-binding domain; Inte | 99.02 | |
| KOG4329 | 445 | consensus DNA-binding protein [General function pr | 98.97 | |
| TIGR01557 | 57 | myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c | 98.79 | |
| KOG4167 | 907 | consensus Predicted DNA-binding protein, contains | 98.75 | |
| smart00717 | 49 | SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi | 98.62 | |
| cd00167 | 45 | SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do | 98.58 | |
| KOG4167 | 907 | consensus Predicted DNA-binding protein, contains | 98.5 | |
| PF00249 | 48 | Myb_DNA-binding: Myb-like DNA-binding domain; Inte | 98.43 | |
| smart00717 | 49 | SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi | 98.24 | |
| PF13921 | 60 | Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: | 98.17 | |
| cd00167 | 45 | SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do | 98.03 | |
| KOG3554 | 693 | consensus Histone deacetylase complex, MTA1 compon | 97.69 | |
| KOG4329 | 445 | consensus DNA-binding protein [General function pr | 97.49 | |
| COG5259 | 531 | RSC8 RSC chromatin remodeling complex subunit RSC8 | 97.43 | |
| KOG1194 | 534 | consensus Predicted DNA-binding protein, contains | 97.36 | |
| KOG0457 | 438 | consensus Histone acetyltransferase complex SAGA/A | 97.3 | |
| PF13921 | 60 | Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: | 97.14 | |
| PLN03212 | 249 | Transcription repressor MYB5; Provisional | 97.04 | |
| KOG1279 | 506 | consensus Chromatin remodeling factor subunit and | 96.9 | |
| PLN03091 | 459 | hypothetical protein; Provisional | 96.63 | |
| PLN03212 | 249 | Transcription repressor MYB5; Provisional | 96.41 | |
| KOG4468 | 782 | consensus Polycomb-group transcriptional regulator | 96.11 | |
| TIGR01557 | 57 | myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c | 95.6 | |
| PLN03091 | 459 | hypothetical protein; Provisional | 95.55 | |
| KOG3554 | 693 | consensus Histone deacetylase complex, MTA1 compon | 95.36 | |
| COG5118 | 507 | BDP1 Transcription initiation factor TFIIIB, Bdp1 | 95.02 | |
| COG5114 | 432 | Histone acetyltransferase complex SAGA/ADA, subuni | 94.81 | |
| COG5259 | 531 | RSC8 RSC chromatin remodeling complex subunit RSC8 | 92.82 | |
| KOG0048 | 238 | consensus Transcription factor, Myb superfamily [T | 92.25 | |
| KOG0049 | 939 | consensus Transcription factor, Myb superfamily [T | 92.08 | |
| KOG4468 | 782 | consensus Polycomb-group transcriptional regulator | 90.81 | |
| KOG1279 | 506 | consensus Chromatin remodeling factor subunit and | 90.15 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 86.28 | |
| KOG0457 | 438 | consensus Histone acetyltransferase complex SAGA/A | 86.26 | |
| KOG0050 | 617 | consensus mRNA splicing protein CDC5 (Myb superfam | 83.36 |
| >KOG1878 consensus Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-84 Score=795.37 Aligned_cols=1338 Identities=20% Similarity=0.146 Sum_probs=1008.8
Q ss_pred CCCCcceecCCCccccCCCCcCCccccCCCCCCcccCCCCCCCCCCCccc--ccCCCccc-ccc----------------
Q 000304 5 ESTRISVSRGDGKYGRNSRENRSSFCQSDCKGYAWDTSNGYATTPGRLHE--VNCNQRSV-DDM---------------- 65 (1697)
Q Consensus 5 ~~~rp~~srgd~~y~r~~r~~rg~~~q~~~r~~~~e~~n~~~~~~~r~~~--~~~~~rsv-~~~---------------- 65 (1697)
.++|+..|+++|.|.++.+|+|-+..|..|.+..|++++++...+.++++ .++.+|++ +++
T Consensus 127 ~~rk~~ask~r~~yek~fpe~R~sReqqER~~~~~~ts~rse~~f~s~l~qe~~~k~~r~~a~iP~~~~D~~~~v~nkle 206 (1672)
T KOG1878|consen 127 SRRKAKASKTREYYEKQFPEIRKSREQQERWQRASETSARSEHEFSSILDQENAEKQMRQLAVIPRMLTDSARQVRNKLE 206 (1672)
T ss_pred CcccchhhhhhhhhhhhCchHHHHHHHHHHHhhhhhhcccccccchhhhccccchhhhhhhhccCcccccchhhhhhhhc
Confidence 47899999999999999999999999999999999999999988888888 55666666 333
Q ss_pred ----ccC-CCCCCCC-----------------------------------------------------------------
Q 000304 66 ----LTY-PSHPQSD----------------------------------------------------------------- 75 (1697)
Q Consensus 66 ----l~~-~s~p~s~----------------------------------------------------------------- 75 (1697)
|+| |--+|.|
T Consensus 207 ~~N~~~~d~nkv~k~~~~~n~Ws~~Ek~~fk~rf~~H~knf~~~as~~erkSv~d~vlfyy~nkkte~yk~~~~r~~~r~ 286 (1672)
T KOG1878|consen 207 NMNSLMKDPNKVHKDRQRMNEWSPEEKELFKSRFAQHVKNFGLIASFFERKSVSDCVLFYYLNKKTENYKKLVRRPKKRS 286 (1672)
T ss_pred cCCccccCcccccchHHHhhhccccccccccchhhhcCcchhhhhhhhcccchhhceeeeeecccchhHHhhhccccccc
Confidence 121 0011222
Q ss_pred --------------cc-ccccccccCccc-cccccccCCCCccccccccCC--CCccccccccCCCCCCCCCCccCCCCC
Q 000304 76 --------------FV-TWDHLQLKDQHD-NKIGSVNGLATGQRCESENSL--DWKKIKWTRSGSLSSRGSGLSHSSSSK 137 (1697)
Q Consensus 76 --------------~~-~w~q~~lkd~~d-nk~~~vn~~~tg~r~dre~~~--~wkp~~w~~sgs~ss~~sg~shsss~~ 137 (1697)
.. +|++..|+|..+ |+..+++..-..+.+.||... .-++++|.- +.+++.-++|||.++.+
T Consensus 287 ~s~~~~~~~~~~~Ele~~ee~~~ledpkes~~~~~~~d~~~~~~~~resv~~e~~~~Ple~~-ei~a~e~de~see~ev~ 365 (1672)
T KOG1878|consen 287 QSYKVGAFPSPEEELEKEEEKPELEDPKESFPKNKLIDYFGERTVERESVNGEEPFMPLEPY-EIFAIEPDELSEEMEVA 365 (1672)
T ss_pred hhccccccCChHhhhhhhhhcccccCccccccccccccccccccccccccccCCCCCCCCCc-cccccCccccchhhhhh
Confidence 13 899999999987 889999999999999999999 888889998 99999999999999999
Q ss_pred CCCCCCCCCCCCcccccccccccCCCCCccceeccCccccccccccCCCCc-ccchhhhhhccccccCCCCCCCCCCccc
Q 000304 138 SMGGVDSSEGKTDFQVKNATSIQSPSGDAATYATSGVLFEETTSRKKPRLG-WGEGLAKYEKKKVEVPDVSGNKDGVFNF 216 (1697)
Q Consensus 138 s~~~~ds~e~~~~~~~k~~t~~~s~s~da~a~~~~~~~see~~~rkk~rlg-wgeglakyekkkv~~p~~~~n~dg~~~~ 216 (1697)
.+|.||....++.+.|+.+|..++..++|.||.+..|..+|+..++|.+++ |+++++||++++|++ ..++++...+
T Consensus 366 k~Glveh~R~~aai~p~vvt~tes~c~na~a~~~~r~N~d~~ld~~k~k~~t~~e~~~k~k~~~vav---t~s~~~~e~m 442 (1672)
T KOG1878|consen 366 KSGLVEHGREWAAILPKVVTKTESQCKNAYAKYKNRHNLDEPLDQHKQKVRTRAEIRDKSKSTRVAV---TFSAKEDETM 442 (1672)
T ss_pred hccchhhhhhHHHhcCccceecccchhhHHHhhhhhhcchhhhhhhhcccccHHHHHhhhcCccccc---cccccccccc
Confidence 999999999999999999999999999999999999999999999999999 999999999999999 7778999999
Q ss_pred cCCCCccccccccccccCCCccccCCCCCCCCCCcccCCCCCcchhcccccccccccccccccC-CCCcccccccccccc
Q 000304 217 SSNAEPLQSLSSNLAEKSPRVMGFSDCASPATPSSVACSSSPGVEEKAFGKAVSVDNDVSNLCG-SPSIVSQNHREGFLF 295 (1697)
Q Consensus 217 ~~n~e~~~~~~~nl~dksp~~~~~~dc~spatpssvacssspg~~~k~~~k~~n~~~~~~n~~~-sp~~~~~~~~~~~~~ 295 (1697)
..+.|..+.+.+++++++|+....-+..||.|+++|+|+|+|+++.++..+.+.+.-.++|+|. .+++...+|++.|.+
T Consensus 443 E~~neeE~~~d~e~l~~s~t~~vv~nd~s~t~~~sv~~~s~Pt~~~~ss~~~~~n~~r~p~e~~~q~s~~~~i~te~~~~ 522 (1672)
T KOG1878|consen 443 EISNEEEETEDAEALNYSGTKQVVWNDDSSTTNLSVAIESSPTPDTESSSWEGMNQPRRPNECEMQYSAMNGIKTEPMIE 522 (1672)
T ss_pred ccccchhcccchhhhccCcccccCCCCCCCCccccccccccCCccccccchhhhcCCCCCccccccccccccccccCCch
Confidence 9999999999999999999877777788889999999999999999999999999899999999 999999999999999
Q ss_pred cccccCCcccchhhhHHHHhhccCCCCCCCccccccccccceehccchhhhhhhhhhhhhhhhhhhhhhcccccCCcCCC
Q 000304 296 NLEKLDTNSIGNLGSSLVELLQYDDPSSVDSSFVRSTAMNKLLVWKGDILKTLEMTETEIDSLENELKSLKSVLGSTSPC 375 (1697)
Q Consensus 296 ~l~~ld~~~~~~lg~~l~ellq~dd~~s~ds~~~r~t~~~kll~~k~~i~k~le~te~eid~le~elks~~~~~~~~~~~ 375 (1697)
+.+++|.+.....|+-|.|||..||..+.|+..+.+|+||.++-|| |.+||+|.||+. |++...+|.+.. -
T Consensus 523 ~~eE~d~i~~e~~gpp~~~ll~t~t~~~~e~~~~~~t~~~d~~~~k----k~~e~ae~eie~-e~ke~~~k~e~~----a 593 (1672)
T KOG1878|consen 523 EVEEEDAIGQEEGGPPLAELLNTDTTSSAEPRRSKGTAENDKKPLK----KDTERAEREIET-EGKERTGKAETR----A 593 (1672)
T ss_pred hhhhhccccccccCccHHHHhcCCcccccchhhhhhhhccccchhh----hhcccchhhccc-cccccchhhhhh----c
Confidence 9999999999999999999999999999999999999999999999 999999999998 888888888875 2
Q ss_pred CcccccccccC--CCCcccccccccccccCCCCccccc-CCCcccccCCCCCCcccccCCCCCccCCCCCcccccccccc
Q 000304 376 PVTSISLSVED--NANPFNKQGTVSNSIIRPAPLQIDC-GDLSVENMPDCSHGLEEVHGNSKDEDIDSPGTATSKFVEPS 452 (1697)
Q Consensus 376 p~~~~~~~~~~--~~~~~~eq~~~s~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ee~~dspg~a~~k~vep~ 452 (1697)
-+...++++++ ++....|++.+ +|.|+.... -..+..+.|+..++ ++++..+ |+|+- +.+.
T Consensus 594 q~~~~~~~~d~~~dE~~e~E~e~~-----~~dp~astgS~~kn~~~aPvD~a~---~p~~~~~---dsp~~-----~~~~ 657 (1672)
T KOG1878|consen 594 QRVPKPVDDDGSADEIDEMEIEDS-----LPDPLASTGSRRKNSVKAPVDLAG---SPADMEG---DSPEP-----PDQD 657 (1672)
T ss_pred ccCCCccccccchhcccccccccc-----cCCcccCccccccccccCcccccc---Ccchhhc---cCCCC-----cCcc
Confidence 33456677888 78888899885 444554443 23444488888777 4566666 67776 3443
Q ss_pred ccccCCCCcccccCCcccccccccccccccccccCCCCCccccccCCC-ccCCCccccccccccccccCccccccchhhH
Q 000304 453 SFVKPVSPSNMLKNGESFGVLDTVHSSNTEVKCTMPGSSFGEVVAGAS-TCGDGDMILESKNDALISSNFSAYADGENML 531 (1697)
Q Consensus 453 ~~~~~~~~~~~~~~~e~~g~~~~~~s~~m~~~~~~~~~~~~~~~~~~~-~c~d~~~~~e~~~~~~~s~d~~s~~~~~~SL 531 (1697)
+ .++.+....+ |+..+.. |+ +.|+ .....++++ +-++ .++. .+++=...+..+..+
T Consensus 658 a-----a~~~~~~~~~---~i~~~~~--~~--~dv~---~k~~~spa~rs~qe---~~D~-----~~ps~~p~~~ke~~~ 714 (1672)
T KOG1878|consen 658 A-----APTQPPDQDP---DIEEVIQ--RD--IDVP---VKTLLSPASRSGQE---KIDF-----ETPSHVPRIQKESEV 714 (1672)
T ss_pred c-----cccCCCCCCC---chhhhcc--hh--cccc---cccccChhhhccCC---cccc-----cCcCCCccccCcchh
Confidence 4 5555555554 3333333 44 2233 222333333 2222 1111 111212445577888
Q ss_pred HHHHHHHhHHHHHHHHHHhhccCCCCCCCCcccCc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000304 532 CDMILGANKELANEASEVLKKLLPRDHSNIDISGV-ANVFCCQNDSLVKEKFAKKKQLLRFKERVLTLKFKAFQHLWRED 610 (1697)
Q Consensus 532 vQ~IyaENRKkAeeAh~iL~gLgPqvelPLd~~~v-yNqdt~QyhEnIkeklAeRKqLLrfKer~La~KY~aL~eaWeek 610 (1697)
||...-+|.|.+..-.-++..+++.++.=....++ +-+.|.|.+-.+.++.+ +--.++.+..++-..|+....-|.++
T Consensus 715 i~p~p~ap~k~s~~~~Gv~n~~~~i~h~~~sek~a~~~g~~t~~~sh~qe~s~-sVG~~r~r~~r~~d~~k~ael~~vk~ 793 (1672)
T KOG1878|consen 715 IQPPPHAPTKISESPDGVRNDPLLIDHYYVSEKGAISPGPCTQLSSHLQESSA-SVGGRRKRLERSNDQFKAAELSGVKQ 793 (1672)
T ss_pred ccCCCCCCcccccCCCCCcCCccccccccccCCcccCCCccccccchhhhhcc-cccccccccccccchhhhccccccch
Confidence 88888888777776655554443333110011111 22344666666666665 33335555555666788888889988
Q ss_pred HHHHhhhhhhhhchhhhccccccCCCCccCCccccccccCCccCC--CCccccHHHHHHHHHhhcchhhhhhhhcccccC
Q 000304 611 LRLLSIRKYRARSQKKCELSLRTTYTGYQKHRSSIRSRFSSPAAG--NLSLVQTAEVINFTSKLLSDSQIKTYRNSLKMP 688 (1697)
Q Consensus 611 ~Rlls~~KrRAKe~KkRE~~~rt~FPEl~KQRsSlReRF~rr~Gg--~LS~vseAEI~Ei~~qlekDpq~KkmR~aAvIP 688 (1697)
+..+....+.+++.+..+.......|+.-.+-+..|-++....-. .-..+-+-|.+.+++...-....+..|.+.++|
T Consensus 794 ~qqesl~~~qaqea~s~~~~~~svt~g~L~~gt~vRl~~~~Sp~rs~~~~hVi~le~~~g~es~~p~~eiap~r~~lk~~ 873 (1672)
T KOG1878|consen 794 EQQESLQVPQAQEAKSENAYPGSVTPGVLVKGTIVRLVNEDSPSRSVAKGHVITLEYEGGMESSVPPHEIAPKRIYLKMP 873 (1672)
T ss_pred hhhhhhcchhhhhcccccCCccccccceeeeceeeecccCCCCCcccccCceeeeeccccccccCCcccccchhhhhccc
Confidence 777777667777776655544455555444444555555322101 001122222323333333333345667888899
Q ss_pred ccccChhcccccEeecCCCCCcchHHHHhhhccCCCCC-HHHHHHHHHHHHhcCCCHHHHHhhcCCCChhHHHHHhhhcc
Q 000304 689 ALILDKKEKMSSRFISSNGLVEDPCAVEKERAMINPWT-SEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYKNH 767 (1697)
Q Consensus 689 pMILD~eERr~~kFiDtNgLVeDP~avyKerq~in~WT-EEEkeIF~EKYlqhPKnFGKIAs~Lp~KTvaDCVlyYYltK 767 (1697)
.|+++..|..+.+||-+||.+.++....+.+.+..+|+ -|+.+.|+.....++|.|-.|++++..++.++ +.|||+..
T Consensus 874 a~v~~~~E~~msr~i~tn~~~~~~~~~~~~~~g~~P~~t~E~~e~~Ln~lr~~~k~~P~i~~s~~a~kt~q-~~~~lkp~ 952 (1672)
T KOG1878|consen 874 AVVSAGAEGLMSRAIPTNNHSPALLKEPIVQQGGIPRRTVETPEDILNPLRPTAKSTPPIRQSLGAFKTQQ-QQQQLKPQ 952 (1672)
T ss_pred ccccccccccccccccCCCCCccccccchhhccCCCcccccchHHHhhhccccCCCCCchHHHHHhhhhhc-cchhhcch
Confidence 99999999999999999999999999988889999999 99999999999999999999999999999999 55555544
Q ss_pred cCcChHHHHhhhccCCCCCCc--ccccccccccc-cccccchhhhhhchhhHHHHHhhhccccccccccccCCCCCCCCC
Q 000304 768 KSDCFEKLKKKHDFSKQGKTS--TNTYLVTTGKR-NRKMNAASLDILGEASEIAAAAQVDGRQLISSGRISSGGRGDSRT 844 (1697)
Q Consensus 768 K~~nYKkLlRk~~lRKRGKss--~~nyL~~sGkk-Nre~naaSldilGaaS~~Aa~A~~a~~~~~sS~~i~s~g~~esk~ 844 (1697)
+...+ .++++ -+|++. ..+|+....++ .+++-++.+||++..+..+-...++...+.++..+++++......
T Consensus 953 ~s~~~-~~Ik~----~~~rs~~~i~~y~~~~~r~~k~~~~aa~Tdik~Dg~st~~a~k~av~~~i~sP~~t~~~~~s~~v 1027 (1672)
T KOG1878|consen 953 QSNLM-QTIKN----ENGRSIHEIPPYQQQQQRPQKEGSIAAGTDIKRDGSSTSGAPKHAVQRLISSPDETLRGLFSLPV 1027 (1672)
T ss_pred hhhHH-HHHHh----hcccchhcccHhhhhcchhhhhhhccccCcccccCccccccchhheeccccCchhhcCCCCcccc
Confidence 44444 44443 133332 24777666655 778888999999875332211222222111233333333321111
Q ss_pred CCCCCCcccc-CCCcccCCCcccchhcccccccccccCcccccccccCCCCCcc--------cchhhhhcc-----cccc
Q 000304 845 SLGDDGIIER-SSSFDVIGGERETAAADVLAGICGSLSSEAMSSCITSSVDPAE--------GQRDWRRQK-----ADSV 910 (1697)
Q Consensus 845 ~e~~dg~~er-ss~~D~~G~EREtvaAdvkAgItgSmSsEa~ssc~TtSvDP~~--------G~re~K~~K-----v~s~ 910 (1697)
-.......++ .+.++..| .-++.+.+.+ ...+.++-.++|-..+..+.. +.+..+... -++.
T Consensus 1028 ~~~~~~~~~g~~~~~~~~~--~~ta~~~i~s--v~~~~~~~~~~~hr~s~S~~s~~a~~lP~~~~~~~~~~sp~l~~~ss 1103 (1672)
T KOG1878|consen 1028 IPEQQRPAEGCKYEQPKHG--QNTASASISS--VDQGPPVLGPALHRDSLSQLSTSATHLPPPHLVSMQRPSPTLHNRSS 1103 (1672)
T ss_pred cccccchhhcccccccccC--Cccccccccc--ccCCCcccchhhcccccccccchhhcCCCcccccccCCccccccccc
Confidence 0000001111 11122223 1122222211 123333333333332222111 111111000 0111
Q ss_pred ccCCCCcccccccCCCCCCcccCCCCCCCCCCHH-HHHHHHHHHHHhCCChHHHHhHhCCCCHHHHHHHHHHHHHHhCCC
Q 000304 911 MRLPSTSDVTQNVDDDTCSDESCGEMDPSDWTDE-EKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLGLD 989 (1697)
Q Consensus 911 ~~~P~tsdvtq~~deet~Sd~S~gEm~ssrWTdE-EkelFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRKRlnLD 989 (1697)
.+++ .++-+- +..|++++|.+.+...|+.. |+-.|......+||.+.-|+..+++....||+.||..|++...|.
T Consensus 1104 ~t~~---~~tsn~-~~~~se~s~~~~~~i~~v~~~e~~~r~~~~~dlgR~~~~is~~~~~~~~~~~~~f~sa~r~~~qLe 1179 (1672)
T KOG1878|consen 1104 STEP---TGTSNP-DNRESEHSTTPEDAIHPVTNNENFSRIRNAIDLGRSHTPISNYPANIDRSMKSSFASAYRHERQLE 1179 (1672)
T ss_pred cccc---ccCCCc-cccccccccCcccCCccccccchhhhccchhhhccccccccccccccChhhhhhHHHHHHHHhccc
Confidence 1111 111111 23467778888888999998 999999999999999999999999999999999999999999987
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCcccccccCcccccCCCCCccccCCCcccccccccccchhhccccccccCCCCCCC
Q 000304 990 LIHTGRGNVGPSVNDDANGGGSDTEDACVLETSSVNCSDKLGSKTDEELPSHVIHSNQEESCSAGAKNLQTDLNKPEDDN 1069 (1697)
Q Consensus 990 ~il~e~~~~g~P~sDda~gggS~t~dac~~E~~s~~~sd~s~~~~~~d~p~~~~~~~~~~s~~~~~~~~~a~L~~~e~~~ 1069 (1697)
..-.-+..+ -+-.-.++.++|-.++|.++.+.++...+.+.++..++|..-.+++.+..++.+.++++.++.....-|
T Consensus 1180 ~~p~~~~~v--av~n~~~~i~~D~~ts~~m~~N~~~~n~~v~~~~r~lsP~~~~i~~~y~a~p~g~~~~s~~~~~~~~~n 1257 (1672)
T KOG1878|consen 1180 PTPSYPNIV--AVQNIRQTITNDYITSQQMLVNPVNGNGQVNDDGRGLSPTEHAISQGYPAFPRGIIDLSQIPRAPPKFN 1257 (1672)
T ss_pred CCCCCCcce--ehhccccccccCcccchhhhcCccccccccCccccccCcccchhhccCCccCCCccccccCCCCCcccC
Confidence 743222111 011124567789999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCcccccccccchhhhccc-----chhcccccccCccccchhhhhhhhhhhhhhHHhhhhhhhcccceeecCC
Q 000304 1070 GITPLNDKDSEAVKPVNNDAFRTESR-----SFELESNNMNGMDNQSESVLDQKNAVELFKTAVRDKVAEQGAVSVSAGE 1144 (1697)
Q Consensus 1070 g~~~~~~~d~~~~~~~~~d~~~~~~~-----~~~~d~~~~~~~~~qs~~~~~~~~~~~s~~~~~~d~~~~~~~~s~~~~~ 1144 (1697)
+. .+...+.+ .|++.|+.++.| .++.|+..+++.+.|+.+.+ ..+++ ||| +.+...+++..
T Consensus 1258 ~~-~~~l~~~~---~la~~p~a~~~F~sr~~ns~~~~~~~~t~ea~~~~a~----~~r~~---E~d---~~~~t~~~i~~ 1323 (1672)
T KOG1878|consen 1258 PS-GLPLAAMD---RLAYAPYAMSSFPSRKENSARDSPGIPTHEAQSQAAG----RLRSR---ERD---EGRETEVTISS 1323 (1672)
T ss_pred CC-CCccchhh---hhhhCccccccCCCccccccccCCCCchhhhhhhhhh----HHhhh---hcc---ccccccceeec
Confidence 97 55555544 577788888885 66899999999998888877 34433 566 45678889999
Q ss_pred CCCCCCCCcchhhccccccccccccccCCCcccccccccccccccccccccccCccccccccccccccccccccc-----
Q 000304 1145 ESDPCPSSSNAVEETNDVVAEASTEGFGNGLERYQPMLLENSLNDVRDKICNVDACGESEIVQDSNTTGSAFDLY----- 1219 (1697)
Q Consensus 1145 ~~~~~~s~~~~~~~~~~~v~e~~~~~~~n~~~~~~~~~~~~sl~~~~~~~~~~d~~~~~~~~~~s~~~~n~~~~~----- 1219 (1697)
++++|. .+.+..+++| |++.++. ++..++.+++.. +.++||.+++|.|++.++
T Consensus 1324 s~~~~~-----~~~~~~~~~e----~s~~~sg-~gs~~~r~s~~~------------~qq~~q~~~rtq~~~lq~~s~p~ 1381 (1672)
T KOG1878|consen 1324 SPLYCG-----LSVLSNPGVE----GSRGGSG-QGSPSPRFSSKN------------QQQVMQAANRTQNSGLQPPSAPH 1381 (1672)
T ss_pred cccccc-----ccccccCCcc----ccccccC-CCCCCchhhhhh------------hhhhhhhhhhhcccccCCccccc
Confidence 999997 6677788888 5555555 777888888888 889999999999999776
Q ss_pred ---cCCCCcceeeccccCCCCCccccCCCCCCCccccc-cchhhHHHHHHhhhccccccccccccccccCCcccccCccc
Q 000304 1220 ---VDASSHSVSSKLDSVDKPPLISLPQWNSHPAAAST-QDSSVIQCEKAFIQDRMSSTLEFQRSKDKSGHKSVVSDDYR 1295 (1697)
Q Consensus 1220 ---~~sc~~~v~~~~~s~~~p~~~sl~~~n~~~~~~s~-~~s~~~q~ek~~~q~~~~s~~~~~~~~d~~~~~s~~~d~~~ 1295 (1697)
+..|+|+|+.++|. +.|..++.+..|++|++.|. +.+.++|+.+||+.+|.+.+|++ |+..
T Consensus 1382 g~~~~~~l~~v~~~~~t-~~p~g~~~~~~~p~~~~~s~~~s~l~~~vd~t~~~~~~~~~le~--------------~~r~ 1446 (1672)
T KOG1878|consen 1382 GTRYPECLHAVPPSVST-ELPIGVSAPRGNPAAHAESASGSSLGGQVDETHDLGWEPNNLEL--------------DGRL 1446 (1672)
T ss_pred ccCCcccccCCCccccc-cccccCcCCCCCccccCcccccCCCcccccccccccCCcccccc--------------cchh
Confidence 35699999999999 99999999999999999999 99999999999999999999999 8888
Q ss_pred cccCccccccccccccccCCccccccccccccCcccccchh--hhhhc-----ccccCCCCCccccccccccccCCCCCC
Q 000304 1296 QHLSVHSIVNHVESPQILNGYPLPISTKKEMNGDINCRQLS--EVQSI-----SKSDRNIDEPYLAQDCYLRKCNSSMPH 1368 (1697)
Q Consensus 1296 q~l~~~~l~~~~~~~~~~~gyp~qip~kkemn~d~~c~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1368 (1697)
|.+ | |+ .|.||..++-.|. ..|.++. +++++ ++++..+.++.+++ +.+.||......
T Consensus 1447 ~a~-~-----~~--------~~~q~g~~~~~~~-~~~~~~~~~~s~~~s~~~r~~s~~v~~~a~~~~-~p~k~~~~~~~~ 1510 (1672)
T KOG1878|consen 1447 QAL-G-----HV--------NPEQIGHLKLTNT-ESCQNPQRSSSQDPSRIPRPKSDLVVKTARTGE-FPLKKCTPSAPK 1510 (1672)
T ss_pred hhc-c-----cC--------CHHhhcchhhcCc-hhhcccccccccCCCCCCccCCcchhcccccCC-CCccccCcccCC
Confidence 877 6 77 8999999999999 8999887 66655 89999999999999 999999999988
Q ss_pred CCcccccccccccccccCccccccccCCCCCcccCCCCeeeeeecccCCCCCCCCCCcccCCCCCCCCC--CCCccc---
Q 000304 1369 SSVTELPFLAENIEQTSDRRRAHSCSFSDTEKPSKNGDVKLFGKILSHPSSSQKSAFSSHDNGENGHHH--KQSSKA--- 1443 (1697)
Q Consensus 1369 ~~~~elp~~~~~~~~~~~~~r~~~~s~s~~ek~~rngdvklfg~ils~~~~~q~~~~~~~~~~~~~~~~--k~~~~s--- 1443 (1697)
|.-.-+.+..+++-|+|+.+.++++.-.+||++||||-|||-+ +++.+.+|. .+...+
T Consensus 1511 ------p~~~~~~~~~s~~~r~~s~s~~~s~~~~~~~sl~~~gs~ls~d-----------~~e~~s~~s~p~~~~e~~~~ 1573 (1672)
T KOG1878|consen 1511 ------PLAVSHKEGASGPSRSKSFSLSDSERLHKNGSLKLHGSVLSTD-----------ANEIKSPHSSPGIVREKSTL 1573 (1672)
T ss_pred ------CCCCccccccCCCCCchhhccccccccccccccccccccccCc-----------cccccCCCCCCCCccccccc
Confidence 7777777888999999999999999999999999999999999 777777754 443333
Q ss_pred cccccccCCCCCCCcccccCCCCCCCCccCcccccccccCCCccccCCCCCCchHHHHhhcccccCCCC
Q 000304 1444 SNLKFTAHHPPDGGAALLKFDRNNYVGLENGPARSYGFWDGSKIQTGFSSLPDSAILLAKYPAAFGGYP 1512 (1697)
Q Consensus 1444 ~~~~~tgh~~~d~~~~~~k~~~~~~~glen~p~~syg~wdg~~iqtg~sslp~~~~~lak~paafsny~ 1512 (1697)
+.+-.|.||.+ ++-.|.|+|.-+|||||| ||++||+++.+++-||+||+..+
T Consensus 1574 ~~~~~~~~~~~------------e~~~~~~~p~~~~~~~~~-----~l~slpesa~~~ss~~e~~~~~~ 1625 (1672)
T KOG1878|consen 1574 SRLEDTRHHYA------------EQQHLQNVPGPSYGFWDG-----GLTSLPESAKLLSSCPEAFSTVL 1625 (1672)
T ss_pred ccHHHHHHHHh------------hccccccCCCcccccccc-----ccccChhhccccCcchhhhcccc
Confidence 34557888887 567899999999999999 99999999999999999999765
|
|
| >KOG1878 consensus Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains [Transcription] | Back alignment and domain information |
|---|
| >KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription] | Back alignment and domain information |
|---|
| >PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins | Back alignment and domain information |
|---|
| >KOG4329 consensus DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class | Back alignment and domain information |
|---|
| >KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription] | Back alignment and domain information |
|---|
| >smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains | Back alignment and domain information |
|---|
| >cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains | Back alignment and domain information |
|---|
| >KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription] | Back alignment and domain information |
|---|
| >PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins | Back alignment and domain information |
|---|
| >smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains | Back alignment and domain information |
|---|
| >PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A | Back alignment and domain information |
|---|
| >cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains | Back alignment and domain information |
|---|
| >KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG4329 consensus DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
| >COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
| >KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription] | Back alignment and domain information |
|---|
| >KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A | Back alignment and domain information |
|---|
| >PLN03212 Transcription repressor MYB5; Provisional | Back alignment and domain information |
|---|
| >KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PLN03091 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PLN03212 Transcription repressor MYB5; Provisional | Back alignment and domain information |
|---|
| >KOG4468 consensus Polycomb-group transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
| >TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class | Back alignment and domain information |
|---|
| >PLN03091 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] | Back alignment and domain information |
|---|
| >COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
| >KOG0048 consensus Transcription factor, Myb superfamily [Transcription] | Back alignment and domain information |
|---|
| >KOG0049 consensus Transcription factor, Myb superfamily [Transcription] | Back alignment and domain information |
|---|
| >KOG4468 consensus Polycomb-group transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
| >KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1697 | ||||
| 4a69_C | 94 | Structure Of Hdac3 Bound To Corepressor And Inosito | 4e-12 | ||
| 1xc5_A | 71 | Solution Structure Of The Smrt Deacetylase Activati | 4e-10 | ||
| 2eqr_A | 61 | Solution Structure Of The First Sant Domain From Hu | 7e-06 | ||
| 2xaf_B | 482 | Crystal Structure Of Lsd1-Corest In Complex With Pa | 3e-04 | ||
| 2iw5_B | 235 | Structural Basis For Corest-dependent Demethylation | 4e-04 | ||
| 2v1d_B | 178 | Structural Basis Of Lsd1-Corest Selectivity In Hist | 5e-04 |
| >pdb|4A69|C Chain C, Structure Of Hdac3 Bound To Corepressor And Inositol Tetraphosphate Length = 94 | Back alignment and structure |
|
| >pdb|1XC5|A Chain A, Solution Structure Of The Smrt Deacetylase Activation Domain Length = 71 | Back alignment and structure |
| >pdb|2EQR|A Chain A, Solution Structure Of The First Sant Domain From Human Nuclear Receptor Corepressor 1 Length = 61 | Back alignment and structure |
| >pdb|2XAF|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine Length = 482 | Back alignment and structure |
| >pdb|2IW5|B Chain B, Structural Basis For Corest-dependent Demethylation Of Nucleosomes By The Human Lsd1 Histone Demethylase Length = 235 | Back alignment and structure |
| >pdb|2V1D|B Chain B, Structural Basis Of Lsd1-Corest Selectivity In Histone H3 Recognition Length = 178 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 4e-32
Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 682 RNSLKMPALILDKKEKMSSRFISSNGLVEDPCAVEKERAMINPWTSEEREIFVDKLATFG 741
R +P ++ D ++ +FI+ NGL+ DP V K+R ++N W+ +E+E F +K
Sbjct: 4 RQLAVIPPMLYDADQQRI-KFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHP 62
Query: 742 KDFRKIASFLNYKTTADCVEFYYKNHKSDCFE 773
K+F IASFL KT A+CV +YY K++ ++
Sbjct: 63 KNFGLIASFLERKTVAECVLYYYLTKKNENYK 94
|
| >4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94 | Back alignment and structure |
|---|
| >2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61 | Back alignment and structure |
|---|
| >2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61 | Back alignment and structure |
|---|
| >2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Length = 482 | Back alignment and structure |
|---|
| >2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Length = 482 | Back alignment and structure |
|---|
| >2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 | Back alignment and structure |
|---|
| >2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 | Back alignment and structure |
|---|
| >2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Length = 70 | Back alignment and structure |
|---|
| >2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Length = 70 | Back alignment and structure |
|---|
| >2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63 | Back alignment and structure |
|---|
| >2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63 | Back alignment and structure |
|---|
| >2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235 | Back alignment and structure |
|---|
| >2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 | Back alignment and structure |
|---|
| >2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 | Back alignment and structure |
|---|
| >2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 | Back alignment and structure |
|---|
| >2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 | Back alignment and structure |
|---|
| >1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 | Back alignment and structure |
|---|
| >2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 | Back alignment and structure |
|---|
| >1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 | Back alignment and structure |
|---|
| >2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73 | Back alignment and structure |
|---|
| >2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1697 | ||||
| d1xc5a1 | 68 | a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 | 4e-22 | |
| d1xc5a1 | 68 | a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 | 2e-11 | |
| d2crga1 | 57 | a.4.1.3 (A:8-64) Metastasis associated protein MTA | 2e-17 | |
| d2crga1 | 57 | a.4.1.3 (A:8-64) Metastasis associated protein MTA | 2e-09 | |
| d2iw5b1 | 65 | a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu | 1e-11 | |
| d2iw5b1 | 65 | a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu | 2e-11 | |
| d2cu7a1 | 65 | a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap | 3e-07 | |
| d2cu7a1 | 65 | a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap | 7e-07 | |
| d2cjja1 | 63 | a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti | 3e-05 | |
| d2cjja1 | 63 | a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti | 8e-04 | |
| d1gv2a2 | 47 | a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou | 6e-05 | |
| d1gv2a2 | 47 | a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou | 0.002 | |
| d1x41a1 | 47 | a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T | 7e-05 | |
| d2cqra1 | 60 | a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 | 3e-04 | |
| d2cqra1 | 60 | a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 | 6e-04 | |
| d1guua_ | 50 | a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus | 4e-04 | |
| d1gvda_ | 52 | a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus | 0.001 | |
| d1w0ta_ | 52 | a.4.1.4 (A:) DNA-binding domain of human telomeric | 0.002 |
| >d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: Homeodomain-like family: Myb/SANT domain domain: Nuclear receptor corepressor 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.2 bits (221), Expect = 4e-22
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 706 NGLVEDPCAVEKERAMINPWTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYK 765
NGL+ DP V K+R ++N W+ +E+E F +K K+F IASFL KT A+CV +YY
Sbjct: 1 NGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 60
Query: 766 NHKSDCFE 773
K++ ++
Sbjct: 61 TKKNENYK 68
|
| >d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 | Back information, alignment and structure |
|---|
| >d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57 | Back information, alignment and structure |
|---|
| >d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57 | Back information, alignment and structure |
|---|
| >d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 | Back information, alignment and structure |
|---|
| >d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 | Back information, alignment and structure |
|---|
| >d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 | Back information, alignment and structure |
|---|
| >d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 | Back information, alignment and structure |
|---|
| >d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 | Back information, alignment and structure |
|---|
| >d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 | Back information, alignment and structure |
|---|
| >d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 | Back information, alignment and structure |
|---|
| >d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 | Back information, alignment and structure |
|---|
| >d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 | Back information, alignment and structure |
|---|
| >d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 | Back information, alignment and structure |
|---|
| >d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 | Back information, alignment and structure |
|---|
| >d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 | Back information, alignment and structure |
|---|
| >d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 | Back information, alignment and structure |
|---|
| >d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1697 | |||
| d1xc5a1 | 68 | Nuclear receptor corepressor 2 {Human (Homo sapien | 99.46 | |
| d2crga1 | 57 | Metastasis associated protein MTA3 {Mouse (Mus mus | 99.32 | |
| d2iw5b1 | 65 | REST corepressor 1, CoREST {Human (Homo sapiens) [ | 99.16 | |
| d2crga1 | 57 | Metastasis associated protein MTA3 {Mouse (Mus mus | 98.99 | |
| d1xc5a1 | 68 | Nuclear receptor corepressor 2 {Human (Homo sapien | 98.93 | |
| d2cu7a1 | 65 | MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 | 98.92 | |
| d2iw5b1 | 65 | REST corepressor 1, CoREST {Human (Homo sapiens) [ | 98.82 | |
| d1x41a1 | 47 | Transcriptional adaptor 2-like, TADA2L, isoform b | 98.59 | |
| d2cu7a1 | 65 | MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 | 98.27 | |
| d1gv2a2 | 47 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 98.14 | |
| d1guua_ | 50 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 98.12 | |
| d2cjja1 | 63 | Radialis {Garden snapdragon (Antirrhinum majus) [T | 98.11 | |
| d1irza_ | 64 | Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId | 98.11 | |
| d1gvda_ | 52 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 98.01 | |
| d2cqra1 | 60 | DnaJ homolog subfamily C member 1 {Human (Homo sap | 97.87 | |
| d2cjja1 | 63 | Radialis {Garden snapdragon (Antirrhinum majus) [T | 97.58 | |
| d1w0ua_ | 55 | Telomeric repeat binding factor 2, TRF2 {Human (Ho | 97.51 | |
| d2cqra1 | 60 | DnaJ homolog subfamily C member 1 {Human (Homo sap | 97.5 | |
| d1x41a1 | 47 | Transcriptional adaptor 2-like, TADA2L, isoform b | 97.45 | |
| d1w0ta_ | 52 | DNA-binding domain of human telomeric protein, hTR | 97.44 | |
| d1gv2a2 | 47 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 97.43 | |
| d1igna1 | 86 | DNA-binding domain of rap1 {Baker's yeast (Sacchar | 97.34 | |
| d2cqqa1 | 59 | DnaJ homolog subfamily C member 1 {Human (Homo sap | 97.16 | |
| d2cqqa1 | 59 | DnaJ homolog subfamily C member 1 {Human (Homo sap | 96.89 | |
| d2ckxa1 | 83 | Telomere binding protein TBP1 {Tobacco (Nicotiana | 96.71 | |
| d1guua_ | 50 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 96.61 | |
| d1gvda_ | 52 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 96.45 | |
| d1ofcx1 | 52 | SANT domain of the nucleosome remodeling ATPase IS | 96.01 | |
| d1ug2a_ | 95 | 2610100b20rik gene product {Mouse (Mus musculus) [ | 95.99 | |
| d1igna1 | 86 | DNA-binding domain of rap1 {Baker's yeast (Sacchar | 95.88 | |
| d1w0ta_ | 52 | DNA-binding domain of human telomeric protein, hTR | 95.01 | |
| d1w0ua_ | 55 | Telomeric repeat binding factor 2, TRF2 {Human (Ho | 94.39 | |
| d1ug2a_ | 95 | 2610100b20rik gene product {Mouse (Mus musculus) [ | 93.14 | |
| d2ckxa1 | 83 | Telomere binding protein TBP1 {Tobacco (Nicotiana | 89.53 | |
| d1ofcx1 | 52 | SANT domain of the nucleosome remodeling ATPase IS | 87.05 | |
| d1irza_ | 64 | Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId | 86.67 |
| >d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: Homeodomain-like family: Myb/SANT domain domain: Nuclear receptor corepressor 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1e-14 Score=119.04 Aligned_cols=68 Identities=43% Similarity=0.798 Sum_probs=66.4
Q ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCHH
Q ss_conf 99876457788520269999998999999999854988778973308899667878855115675738
Q 000304 706 NGLVEDPCAVEKERAMINPWTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYKNHKSDCFE 773 (1697)
Q Consensus 706 NgLVeDP~avyKerq~in~WTEEEKeIF~EKylqhPKnFGKIAs~Lp~KTvaDCVlfYYltKKs~nYK 773 (1697)
||+|+||+..++.+...+.||++|.++|.+++.+|||+|.+||.+||+||..+|+.|||++||.++||
T Consensus 1 ng~v~dp~~~~~~~~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~kk~~~~K 68 (68)
T d1xc5a1 1 NGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNENYK 68 (68)
T ss_dssp CCSSCCCCTTTTSTTTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 97541528887364579899999999999999998876999998769979999999999987745789
|
| >d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} | Back information, alignment and structure |
|---|
| >d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} | Back information, alignment and structure |
|---|
| >d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
| >d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
| >d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|